Query 042445
Match_columns 246
No_of_seqs 125 out of 1364
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0436 Aspartate/tyrosine/aro 100.0 3.2E-45 6.8E-50 309.5 23.4 229 2-242 154-392 (393)
2 KOG0259 Tyrosine aminotransfer 100.0 3.5E-44 7.6E-49 286.8 24.5 244 2-245 190-437 (447)
3 PLN00145 tyrosine/nicotianamin 100.0 5.4E-43 1.2E-47 300.8 25.7 244 2-245 181-428 (430)
4 PLN02187 rooty/superroot1 100.0 8.8E-42 1.9E-46 295.2 25.0 241 2-245 195-442 (462)
5 PLN02656 tyrosine transaminase 100.0 1.4E-41 3.1E-46 290.9 24.7 235 12-246 174-408 (409)
6 PLN00143 tyrosine/nicotianamin 100.0 4.8E-41 1E-45 287.5 25.7 244 2-245 161-408 (409)
7 TIGR01264 tyr_amTase_E tyrosin 100.0 3.4E-40 7.4E-45 282.0 25.0 228 12-242 173-400 (401)
8 PTZ00433 tyrosine aminotransfe 100.0 5.7E-40 1.2E-44 281.3 25.1 229 12-243 182-410 (412)
9 PRK06855 aminotransferase; Val 100.0 8.2E-40 1.8E-44 281.6 24.1 229 12-243 176-431 (433)
10 PRK06207 aspartate aminotransf 100.0 1.3E-39 2.9E-44 278.2 24.6 218 12-243 183-404 (405)
11 TIGR01265 tyr_nico_aTase tyros 100.0 2.1E-39 4.6E-44 277.1 25.8 238 3-242 161-402 (403)
12 PLN00175 aminotransferase fami 100.0 4.7E-39 1E-43 275.3 23.6 223 3-240 179-412 (413)
13 PLN02607 1-aminocyclopropane-1 100.0 4.7E-39 1E-43 276.8 23.6 222 12-243 205-439 (447)
14 PRK08636 aspartate aminotransf 100.0 8.2E-39 1.8E-43 273.5 24.8 219 12-243 180-402 (403)
15 PRK05957 aspartate aminotransf 100.0 1.6E-38 3.4E-43 270.6 24.4 229 2-244 151-388 (389)
16 PRK06107 aspartate aminotransf 100.0 9.6E-39 2.1E-43 273.0 23.2 230 3-242 158-401 (402)
17 PRK13355 bifunctional HTH-doma 100.0 1E-38 2.2E-43 280.3 23.6 237 2-243 272-516 (517)
18 PRK07681 aspartate aminotransf 100.0 1.2E-38 2.5E-43 272.3 23.0 210 12-237 171-384 (399)
19 PRK09148 aminotransferase; Val 100.0 1.8E-38 4E-43 271.3 24.2 221 12-245 170-394 (405)
20 PRK07324 transaminase; Validat 100.0 2E-38 4.3E-43 268.4 23.9 222 3-242 145-371 (373)
21 PRK06348 aspartate aminotransf 100.0 2E-38 4.3E-43 269.6 23.1 222 2-238 153-382 (384)
22 PLN02450 1-aminocyclopropane-1 100.0 2.8E-38 6.2E-43 273.8 23.6 222 12-243 196-432 (468)
23 PLN02376 1-aminocyclopropane-1 100.0 4.5E-38 9.8E-43 273.5 24.1 222 12-243 204-440 (496)
24 PRK07682 hypothetical protein; 100.0 2E-38 4.3E-43 269.2 20.9 224 3-242 146-377 (378)
25 COG1168 MalY Bifunctional PLP- 100.0 5.9E-38 1.3E-42 252.5 21.9 228 2-242 148-387 (388)
26 PRK07366 succinyldiaminopimela 100.0 3E-38 6.5E-43 268.9 21.3 213 12-239 170-388 (388)
27 PTZ00377 alanine aminotransfer 100.0 6.3E-38 1.4E-42 273.2 23.6 225 12-245 223-479 (481)
28 PRK08960 hypothetical protein; 100.0 1.1E-37 2.3E-42 265.4 23.9 213 12-240 170-386 (387)
29 TIGR03540 DapC_direct LL-diami 100.0 6.9E-38 1.5E-42 266.3 22.5 210 12-237 169-382 (383)
30 PRK08068 transaminase; Reviewe 100.0 7.8E-38 1.7E-42 266.4 22.8 211 12-238 172-386 (389)
31 COG1167 ARO8 Transcriptional r 100.0 1.3E-37 2.9E-42 268.4 24.1 227 2-244 216-458 (459)
32 PRK07590 L,L-diaminopimelate a 100.0 1E-37 2.2E-42 267.3 22.4 212 12-238 181-408 (409)
33 PRK09276 LL-diaminopimelate am 100.0 1.1E-37 2.4E-42 265.2 22.4 210 12-237 171-384 (385)
34 PRK09147 succinyldiaminopimela 100.0 1.2E-37 2.7E-42 265.8 22.7 209 12-240 171-395 (396)
35 PRK12414 putative aminotransfe 100.0 1.3E-37 2.8E-42 264.6 22.2 221 2-237 153-383 (384)
36 PRK09265 aminotransferase AlaT 100.0 2.9E-37 6.2E-42 264.1 24.4 228 12-243 173-403 (404)
37 KOG0257 Kynurenine aminotransf 100.0 8.5E-39 1.8E-43 259.7 13.8 226 2-237 163-415 (420)
38 PRK09082 methionine aminotrans 100.0 8.6E-38 1.9E-42 265.8 19.5 221 3-237 155-385 (386)
39 PRK07568 aspartate aminotransf 100.0 4.8E-37 1E-41 262.3 24.0 227 2-243 153-394 (397)
40 PRK05942 aspartate aminotransf 100.0 3E-37 6.4E-42 263.2 22.6 211 12-238 175-389 (394)
41 PRK06108 aspartate aminotransf 100.0 3.3E-37 7.2E-42 262.1 22.8 214 12-240 163-381 (382)
42 PRK07683 aminotransferase A; V 100.0 6.7E-37 1.4E-41 260.4 24.4 217 12-244 166-386 (387)
43 PRK08912 hypothetical protein; 100.0 4.7E-37 1E-41 261.5 22.7 217 12-241 164-386 (387)
44 PRK07337 aminotransferase; Val 100.0 7.2E-37 1.6E-41 260.5 23.5 225 3-239 155-387 (388)
45 PRK07309 aromatic amino acid a 100.0 7E-37 1.5E-41 260.6 23.3 217 12-243 171-390 (391)
46 PLN02231 alanine transaminase 100.0 6.1E-37 1.3E-41 268.0 23.2 225 12-244 276-530 (534)
47 PRK08363 alanine aminotransfer 100.0 1.1E-36 2.4E-41 260.1 23.7 218 12-243 171-396 (398)
48 TIGR03542 DAPAT_plant LL-diami 100.0 8.7E-37 1.9E-41 260.9 22.9 212 12-238 178-401 (402)
49 PRK08361 aspartate aminotransf 100.0 4.3E-37 9.3E-42 262.0 20.6 216 12-241 171-390 (391)
50 PRK05764 aspartate aminotransf 100.0 2.4E-36 5.1E-41 257.8 24.6 221 12-242 169-392 (393)
51 TIGR03538 DapC_gpp succinyldia 100.0 1.2E-36 2.5E-41 259.5 21.8 207 12-238 170-392 (393)
52 PRK15481 transcriptional regul 100.0 1.8E-36 4E-41 261.1 23.2 217 2-240 202-430 (431)
53 PRK05839 hypothetical protein; 100.0 2E-36 4.4E-41 256.3 22.1 203 12-240 160-373 (374)
54 PRK08175 aminotransferase; Val 100.0 3.7E-36 7.9E-41 256.6 23.1 218 12-242 169-390 (395)
55 PRK07777 aminotransferase; Val 100.0 4.3E-36 9.3E-41 255.6 23.4 224 2-239 150-384 (387)
56 PRK06290 aspartate aminotransf 100.0 4.8E-36 1E-40 256.3 22.1 216 12-242 184-406 (410)
57 TIGR03537 DapC succinyldiamino 100.0 9.1E-36 2E-40 250.4 21.6 206 12-237 141-349 (350)
58 PRK06358 threonine-phosphate d 100.0 1.3E-35 2.7E-40 249.7 21.7 206 12-239 146-353 (354)
59 PRK09275 aspartate aminotransf 100.0 6E-36 1.3E-40 258.9 20.1 232 2-244 232-520 (527)
60 PRK09440 avtA valine--pyruvate 100.0 2.8E-35 6E-40 252.9 23.7 218 12-245 184-415 (416)
61 PRK07865 N-succinyldiaminopime 100.0 2.3E-35 5E-40 249.2 22.7 205 12-236 153-363 (364)
62 PRK07550 hypothetical protein; 100.0 3.9E-35 8.4E-40 249.7 23.2 212 12-238 168-384 (386)
63 TIGR03801 asp_4_decarbox aspar 100.0 2.8E-35 6.1E-40 254.5 20.2 231 3-244 232-519 (521)
64 PF00155 Aminotran_1_2: Aminot 100.0 2.1E-35 4.5E-40 249.5 18.7 207 12-235 153-363 (363)
65 TIGR03539 DapC_actino succinyl 100.0 1.5E-34 3.3E-39 243.5 22.4 204 12-235 147-356 (357)
66 PRK06425 histidinol-phosphate 100.0 8.3E-35 1.8E-39 242.8 20.5 202 12-239 127-331 (332)
67 KOG0256 1-aminocyclopropane-1- 100.0 1.6E-34 3.4E-39 233.4 21.0 222 12-243 231-463 (471)
68 PRK07392 threonine-phosphate d 100.0 1.2E-34 2.5E-39 244.6 20.1 200 12-235 153-356 (360)
69 PRK06959 putative threonine-ph 100.0 6E-34 1.3E-38 237.9 23.0 202 12-244 135-336 (339)
70 PRK04781 histidinol-phosphate 100.0 2.7E-34 5.8E-39 242.4 20.4 202 12-237 157-359 (364)
71 PRK05664 threonine-phosphate d 100.0 1E-33 2.2E-38 236.0 23.4 197 12-240 129-327 (330)
72 PRK08056 threonine-phosphate d 100.0 4.2E-34 9.2E-39 240.7 20.6 205 12-239 147-353 (356)
73 KOG0634 Aromatic amino acid am 100.0 9.8E-34 2.1E-38 230.5 21.4 224 12-245 210-470 (472)
74 PRK03158 histidinol-phosphate 100.0 1.7E-34 3.6E-39 243.6 17.6 203 12-238 156-358 (359)
75 PRK08637 hypothetical protein; 100.0 8.4E-34 1.8E-38 241.5 21.8 218 12-242 151-387 (388)
76 PLN02672 methionine S-methyltr 100.0 7.6E-34 1.6E-38 259.8 22.4 229 2-240 818-1079(1082)
77 PLN02397 aspartate transaminas 100.0 5.7E-34 1.2E-38 244.6 20.1 203 12-240 199-420 (423)
78 COG0079 HisC Histidinol-phosph 100.0 5.3E-34 1.1E-38 237.5 18.9 204 12-241 150-354 (356)
79 PRK14809 histidinol-phosphate 100.0 5.1E-34 1.1E-38 240.4 18.9 198 12-240 159-356 (357)
80 PRK06836 aspartate aminotransf 100.0 2.1E-33 4.4E-38 239.6 22.0 217 2-243 159-393 (394)
81 PRK06225 aspartate aminotransf 100.0 3.4E-33 7.3E-38 237.3 22.7 215 12-244 162-379 (380)
82 PTZ00376 aspartate aminotransf 100.0 7.6E-34 1.7E-38 242.9 18.7 202 12-240 181-402 (404)
83 PRK02610 histidinol-phosphate 100.0 1.5E-33 3.3E-38 238.8 20.0 201 12-243 173-373 (374)
84 PRK01533 histidinol-phosphate 100.0 4.3E-34 9.3E-39 241.1 15.8 212 2-243 142-357 (366)
85 PRK09257 aromatic amino acid a 100.0 1.5E-33 3.2E-38 240.6 18.0 205 12-238 177-395 (396)
86 PLN03026 histidinol-phosphate 100.0 5.6E-33 1.2E-37 235.6 19.6 208 2-236 165-377 (380)
87 PRK01688 histidinol-phosphate 100.0 1E-33 2.2E-38 237.8 14.7 200 12-235 150-350 (351)
88 PRK05166 histidinol-phosphate 100.0 3.9E-33 8.6E-38 236.1 17.6 211 3-235 151-368 (371)
89 PRK02731 histidinol-phosphate 100.0 1.5E-32 3.2E-37 232.4 19.7 217 2-240 145-365 (367)
90 PRK08153 histidinol-phosphate 100.0 3E-32 6.4E-37 230.5 21.0 207 12-243 160-367 (369)
91 TIGR01140 L_thr_O3P_dcar L-thr 100.0 1.7E-32 3.6E-37 228.7 19.1 207 2-235 117-329 (330)
92 PRK07908 hypothetical protein; 100.0 1.3E-31 2.9E-36 225.1 21.4 200 12-239 144-345 (349)
93 PRK04870 histidinol-phosphate 100.0 1.2E-31 2.6E-36 225.9 17.0 205 2-237 143-354 (356)
94 PRK08354 putative aminotransfe 100.0 8E-31 1.7E-35 216.9 20.7 185 12-234 122-308 (311)
95 PRK05387 histidinol-phosphate 100.0 1E-30 2.2E-35 220.1 19.3 202 12-240 149-352 (353)
96 PRK04635 histidinol-phosphate 100.0 4.2E-31 9.2E-36 222.4 16.3 200 12-237 152-351 (354)
97 PLN02368 alanine transaminase 100.0 3.3E-31 7.1E-36 225.5 15.0 162 12-182 215-398 (407)
98 PRK14807 histidinol-phosphate 100.0 2.9E-30 6.3E-35 217.0 20.5 206 2-238 138-349 (351)
99 COG3977 Alanine-alpha-ketoisov 100.0 5.1E-30 1.1E-34 200.1 20.0 217 12-244 184-414 (417)
100 PRK03317 histidinol-phosphate 100.0 1.7E-30 3.6E-35 219.9 18.5 200 12-241 165-364 (368)
101 PRK09105 putative aminotransfe 100.0 2.6E-30 5.6E-35 218.5 19.1 198 12-239 170-368 (370)
102 PRK14808 histidinol-phosphate 100.0 3.3E-30 7.1E-35 215.2 19.3 191 12-237 143-333 (335)
103 PRK03321 putative aminotransfe 100.0 2.2E-30 4.8E-35 218.0 16.6 200 12-239 150-349 (352)
104 PRK00950 histidinol-phosphate 100.0 5.9E-30 1.3E-34 216.1 17.8 206 2-239 149-360 (361)
105 TIGR01141 hisC histidinol-phos 100.0 7.8E-30 1.7E-34 214.2 16.8 198 12-235 147-345 (346)
106 PRK03967 histidinol-phosphate 100.0 1.2E-28 2.5E-33 206.1 16.9 188 12-239 145-332 (337)
107 cd00609 AAT_like Aspartate ami 99.9 7.2E-26 1.6E-30 189.8 22.6 210 12-236 137-349 (350)
108 PF12897 Aminotran_MocR: Alani 99.9 1.2E-25 2.6E-30 182.1 19.0 213 12-241 179-415 (425)
109 KOG0633 Histidinol phosphate a 99.9 4.5E-26 9.7E-31 174.9 15.1 208 12-237 165-373 (375)
110 TIGR03576 pyridox_MJ0158 pyrid 99.9 3.3E-25 7.2E-30 185.2 21.2 198 15-239 143-345 (346)
111 PRK02627 acetylornithine amino 99.9 4.2E-24 9.1E-29 182.6 19.9 213 3-242 174-395 (396)
112 PRK05093 argD bifunctional N-s 99.9 5.9E-24 1.3E-28 181.9 18.9 215 3-242 176-401 (403)
113 PRK01278 argD acetylornithine 99.9 3.4E-23 7.4E-28 176.5 19.7 210 3-241 167-388 (389)
114 PLN02822 serine palmitoyltrans 99.9 1.4E-22 3E-27 176.2 21.4 214 12-243 250-479 (481)
115 TIGR00707 argD acetylornithine 99.9 5.5E-23 1.2E-27 174.7 18.5 199 12-238 175-378 (379)
116 PRK13392 5-aminolevulinate syn 99.9 9.7E-23 2.1E-27 174.9 20.1 207 12-242 183-398 (410)
117 PRK04073 rocD ornithine--oxo-a 99.9 6E-23 1.3E-27 175.3 17.4 209 2-239 177-395 (396)
118 PRK03244 argD acetylornithine 99.9 1.4E-22 3E-27 173.3 18.5 204 12-243 188-396 (398)
119 PRK08088 4-aminobutyrate amino 99.9 1.4E-22 3.1E-27 174.3 18.0 214 12-242 205-424 (425)
120 TIGR00858 bioF 8-amino-7-oxono 99.9 5E-22 1.1E-26 167.5 19.9 199 12-235 151-359 (360)
121 KOG0258 Alanine aminotransfera 99.9 3.2E-22 7E-27 161.4 16.5 227 8-243 214-471 (475)
122 PRK02936 argD acetylornithine 99.9 5E-22 1.1E-26 168.7 18.4 198 12-239 172-377 (377)
123 PRK13238 tnaA tryptophanase/L- 99.9 1.3E-21 2.8E-26 169.0 17.1 221 2-241 164-433 (460)
124 PRK09064 5-aminolevulinate syn 99.9 5.7E-21 1.2E-25 163.8 20.8 207 12-242 183-398 (407)
125 PRK12381 bifunctional succinyl 99.9 2.6E-21 5.5E-26 165.7 18.6 218 3-244 175-402 (406)
126 TIGR01821 5aminolev_synth 5-am 99.9 6.3E-21 1.4E-25 163.3 21.0 207 12-242 182-397 (402)
127 PRK05958 8-amino-7-oxononanoat 99.9 5.1E-21 1.1E-25 162.9 19.8 202 12-238 173-384 (385)
128 PRK04260 acetylornithine amino 99.9 3.1E-21 6.8E-26 163.7 18.3 199 12-238 170-374 (375)
129 PLN02483 serine palmitoyltrans 99.9 1.4E-20 3E-25 164.1 21.4 202 18-242 251-467 (489)
130 PLN00144 acetylornithine trans 99.9 5.6E-21 1.2E-25 162.1 18.1 196 17-242 177-381 (382)
131 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 8.4E-21 1.8E-25 160.7 18.9 205 12-242 151-369 (370)
132 PRK10874 cysteine sulfinate de 99.9 2.2E-20 4.8E-25 159.9 20.6 213 2-242 151-399 (401)
133 PRK07049 methionine gamma-lyas 99.9 2E-20 4.2E-25 160.5 20.1 137 12-169 179-320 (427)
134 PTZ00125 ornithine aminotransf 99.9 1.3E-20 2.8E-25 161.3 18.9 207 12-243 183-397 (400)
135 TIGR01822 2am3keto_CoA 2-amino 99.9 3.2E-20 6.9E-25 158.5 21.3 206 12-242 175-390 (393)
136 PRK10534 L-threonine aldolase; 99.9 4.7E-21 1E-25 160.1 15.7 193 12-240 134-332 (333)
137 TIGR00700 GABAtrnsam 4-aminobu 99.9 9.5E-21 2.1E-25 162.7 16.8 205 19-240 209-419 (420)
138 PRK07505 hypothetical protein; 99.9 3.5E-20 7.5E-25 158.7 20.0 215 2-241 170-399 (402)
139 PLN02721 threonine aldolase 99.9 4.2E-20 9E-25 155.5 20.1 205 12-241 142-352 (353)
140 TIGR03392 FeS_syn_CsdA cystein 99.9 5.2E-20 1.1E-24 157.5 20.6 213 2-242 148-396 (398)
141 PRK07179 hypothetical protein; 99.9 6.7E-20 1.4E-24 157.2 21.2 215 2-242 171-399 (407)
142 PRK06939 2-amino-3-ketobutyrat 99.9 7.9E-20 1.7E-24 156.2 21.3 206 12-242 179-394 (397)
143 TIGR01825 gly_Cac_T_rel pyrido 99.9 1.4E-19 3E-24 154.2 21.7 204 12-242 168-382 (385)
144 PRK00854 rocD ornithine--oxo-a 99.9 5.1E-20 1.1E-24 157.7 19.0 214 2-240 178-400 (401)
145 PRK06918 4-aminobutyrate amino 99.9 6.1E-20 1.3E-24 159.0 18.8 213 12-244 223-446 (451)
146 cd06454 KBL_like KBL_like; thi 99.8 2.4E-19 5.2E-24 150.6 20.9 203 12-238 137-348 (349)
147 cd00610 OAT_like Acetyl ornith 99.8 4E-20 8.7E-25 158.8 16.3 207 12-239 195-413 (413)
148 COG1448 TyrB Aspartate/tyrosin 99.8 2.3E-20 4.9E-25 151.2 13.6 202 15-238 180-395 (396)
149 PRK13393 5-aminolevulinate syn 99.8 3E-19 6.6E-24 153.1 21.4 207 12-242 182-397 (406)
150 cd06451 AGAT_like Alanine-glyo 99.8 2.6E-19 5.7E-24 150.9 20.3 213 2-240 114-356 (356)
151 PRK09792 4-aminobutyrate trans 99.8 1.6E-19 3.4E-24 155.1 18.9 205 17-240 208-420 (421)
152 TIGR00713 hemL glutamate-1-sem 99.8 1.1E-19 2.4E-24 156.6 16.8 207 14-241 203-422 (423)
153 TIGR03246 arg_catab_astC succi 99.8 2.5E-19 5.5E-24 153.0 18.3 214 3-241 171-395 (397)
154 TIGR01979 sufS cysteine desulf 99.8 4.7E-19 1E-23 151.8 19.8 214 2-242 150-402 (403)
155 PRK04612 argD acetylornithine 99.8 5.1E-19 1.1E-23 151.1 19.7 207 12-244 191-406 (408)
156 TIGR03301 PhnW-AepZ 2-aminoeth 99.8 5E-19 1.1E-23 149.0 19.2 201 12-238 130-354 (355)
157 PLN02624 ornithine-delta-amino 99.8 3.8E-19 8.3E-24 154.6 18.3 210 12-243 229-446 (474)
158 cd00378 SHMT Serine-glycine hy 99.8 1.3E-18 2.7E-23 149.1 21.2 215 2-241 151-385 (402)
159 PRK09295 bifunctional cysteine 99.8 7.7E-19 1.7E-23 150.6 19.7 210 2-239 155-402 (406)
160 PRK06777 4-aminobutyrate amino 99.8 9.2E-19 2E-23 150.3 19.7 201 18-240 209-420 (421)
161 PRK08247 cystathionine gamma-s 99.8 1.2E-18 2.7E-23 147.1 20.0 213 2-241 127-364 (366)
162 PRK06460 hypothetical protein; 99.8 3.8E-18 8.3E-23 144.5 21.9 134 12-169 135-270 (376)
163 PRK08360 4-aminobutyrate amino 99.8 2.8E-18 6.1E-23 147.9 20.6 210 12-243 208-428 (443)
164 PRK06767 methionine gamma-lyas 99.8 2.7E-18 5.8E-23 146.0 19.6 208 2-240 137-384 (386)
165 PRK02948 cysteine desulfurase; 99.8 7.4E-19 1.6E-23 149.5 15.8 214 2-243 129-376 (381)
166 PLN02855 Bifunctional selenocy 99.8 3E-18 6.5E-23 147.7 19.2 215 2-243 164-420 (424)
167 PLN02242 methionine gamma-lyas 99.8 5.7E-18 1.2E-22 144.9 20.1 137 2-161 153-298 (418)
168 PRK07495 4-aminobutyrate amino 99.8 4.8E-18 1E-22 145.9 19.1 209 15-244 207-424 (425)
169 PRK06234 methionine gamma-lyas 99.8 8.1E-18 1.8E-22 143.6 19.6 140 2-165 140-289 (400)
170 TIGR01885 Orn_aminotrans ornit 99.8 3.7E-18 7.9E-23 146.2 17.5 205 12-239 191-400 (401)
171 cd00617 Tnase_like Tryptophana 99.8 4E-18 8.7E-23 145.6 17.2 223 2-242 139-409 (431)
172 PRK08249 cystathionine gamma-s 99.8 3E-17 6.6E-22 139.8 21.3 144 2-169 140-289 (398)
173 TIGR03403 nifS_epsilon cystein 99.8 1.6E-17 3.4E-22 141.4 19.6 219 2-243 131-377 (382)
174 cd06502 TA_like Low-specificit 99.8 6.3E-18 1.4E-22 141.5 16.7 198 12-237 132-337 (338)
175 TIGR02326 transamin_PhnW 2-ami 99.8 2.8E-17 6.1E-22 139.0 20.7 202 12-239 134-360 (363)
176 PRK13479 2-aminoethylphosphona 99.8 3.9E-17 8.5E-22 138.3 20.8 205 12-242 136-364 (368)
177 PRK07504 O-succinylhomoserine 99.8 2.2E-17 4.8E-22 140.8 19.2 142 2-167 141-289 (398)
178 cd00614 CGS_like CGS_like: Cys 99.8 2E-17 4.3E-22 140.1 18.5 145 2-169 116-266 (369)
179 PRK08045 cystathionine gamma-s 99.8 3.6E-17 7.8E-22 138.8 19.9 145 2-169 128-278 (386)
180 TIGR01976 am_tr_V_VC1184 cyste 99.8 1.3E-17 2.9E-22 142.6 17.5 206 2-235 147-397 (397)
181 PRK08117 4-aminobutyrate amino 99.8 1.9E-17 4.1E-22 143.0 18.2 204 21-244 221-432 (433)
182 cd06453 SufS_like Cysteine des 99.8 1.6E-17 3.5E-22 140.9 17.3 207 2-235 130-373 (373)
183 PRK08776 cystathionine gamma-s 99.8 1.1E-16 2.4E-21 136.6 22.1 144 2-168 136-285 (405)
184 PRK07582 cystathionine gamma-l 99.8 7.3E-17 1.6E-21 136.3 20.8 194 12-240 137-364 (366)
185 PRK08133 O-succinylhomoserine 99.8 5.1E-17 1.1E-21 138.2 19.9 144 2-169 137-286 (390)
186 COG0156 BioF 7-keto-8-aminopel 99.8 6.3E-17 1.4E-21 135.3 19.8 189 28-238 189-387 (388)
187 TIGR02407 ectoine_ectB diamino 99.8 3.8E-17 8.2E-22 140.0 18.5 198 18-241 205-412 (412)
188 TIGR02080 O_succ_thio_ly O-suc 99.8 4.5E-17 9.9E-22 138.1 18.7 145 2-169 127-277 (382)
189 PRK06058 4-aminobutyrate amino 99.8 7.2E-17 1.6E-21 139.5 19.2 210 12-241 223-442 (443)
190 PRK07810 O-succinylhomoserine 99.8 1.9E-16 4.1E-21 135.1 21.0 144 2-169 146-296 (403)
191 cd06452 SepCysS Sep-tRNA:Cys-t 99.8 8.7E-17 1.9E-21 135.9 18.5 203 12-239 144-360 (361)
192 PRK08861 cystathionine gamma-s 99.8 2.2E-16 4.8E-21 133.7 20.9 145 2-169 129-279 (388)
193 PF04864 Alliinase_C: Allinase 99.8 8.9E-18 1.9E-22 134.9 11.6 198 12-238 142-362 (363)
194 TIGR03402 FeS_nifS cysteine de 99.8 1.1E-16 2.3E-21 136.2 18.4 218 2-243 127-374 (379)
195 TIGR00709 dat 2,4-diaminobutyr 99.8 1.7E-16 3.7E-21 137.1 19.8 213 12-245 212-439 (442)
196 TIGR01325 O_suc_HS_sulf O-succ 99.7 2.4E-16 5.3E-21 133.8 20.2 144 2-169 130-279 (380)
197 TIGR01328 met_gam_lyase methio 99.7 3.8E-16 8.2E-21 132.9 21.0 144 2-169 135-286 (391)
198 PRK07503 methionine gamma-lyas 99.7 3.4E-16 7.5E-21 133.7 20.4 140 2-165 141-288 (403)
199 PRK07811 cystathionine gamma-s 99.7 3.1E-16 6.7E-21 133.4 19.8 145 2-169 137-287 (388)
200 PLN03227 serine palmitoyltrans 99.7 5.3E-16 1.1E-20 132.2 21.2 215 12-243 143-384 (392)
201 PRK07269 cystathionine gamma-s 99.7 8E-17 1.7E-21 135.6 16.0 212 2-239 127-362 (364)
202 PLN02409 serine--glyoxylate am 99.7 3.9E-16 8.4E-21 133.6 20.3 208 12-242 142-373 (401)
203 PLN02955 8-amino-7-oxononanoat 99.7 3.2E-16 7E-21 134.0 19.5 194 17-241 259-461 (476)
204 PRK09264 diaminobutyrate--2-ox 99.7 2.1E-16 4.6E-21 136.0 18.5 200 20-243 211-418 (425)
205 PRK13520 L-tyrosine decarboxyl 99.7 4.2E-16 9E-21 132.1 19.4 213 2-240 142-370 (371)
206 PRK05937 8-amino-7-oxononanoat 99.7 7.7E-16 1.7E-20 130.5 20.4 201 12-244 148-353 (370)
207 KOG1360 5-aminolevulinate synt 99.7 4.1E-16 9E-21 126.9 17.6 204 17-242 313-525 (570)
208 PRK08574 cystathionine gamma-s 99.7 1.3E-15 2.8E-20 129.3 19.9 142 2-166 127-275 (385)
209 PRK05964 adenosylmethionine--8 99.7 7.9E-16 1.7E-20 132.5 17.6 205 12-241 203-422 (423)
210 PRK00062 glutamate-1-semialdeh 99.7 5.2E-16 1.1E-20 133.7 16.4 207 15-242 206-425 (426)
211 PRK08064 cystathionine beta-ly 99.7 2.4E-15 5.2E-20 128.1 20.2 207 2-242 129-383 (390)
212 PRK09028 cystathionine beta-ly 99.7 3.4E-15 7.3E-20 126.5 20.2 143 3-169 138-286 (394)
213 cd00613 GDC-P Glycine cleavage 99.7 9.1E-16 2E-20 131.3 16.7 207 2-235 150-398 (398)
214 TIGR03812 tyr_de_CO2_Arch tyro 99.7 3.6E-15 7.8E-20 126.5 20.1 210 2-237 144-372 (373)
215 PRK00011 glyA serine hydroxyme 99.7 6E-15 1.3E-19 127.0 21.4 215 2-241 155-389 (416)
216 TIGR01326 OAH_OAS_sulfhy OAH/O 99.7 4.2E-15 9.2E-20 127.6 19.5 83 2-95 133-219 (418)
217 TIGR01329 cysta_beta_ly_E cyst 99.7 4E-15 8.6E-20 126.2 19.0 209 2-241 122-375 (378)
218 PRK08248 O-acetylhomoserine am 99.7 4.9E-15 1.1E-19 127.3 19.3 152 2-169 140-322 (431)
219 PRK06084 O-acetylhomoserine am 99.7 4.7E-15 1E-19 127.3 19.0 150 2-169 134-317 (425)
220 PRK09331 Sep-tRNA:Cys-tRNA syn 99.7 7.3E-15 1.6E-19 125.2 19.8 207 12-242 163-382 (387)
221 COG4992 ArgD Ornithine/acetylo 99.7 3.3E-15 7.1E-20 123.3 16.9 214 2-244 175-401 (404)
222 TIGR01977 am_tr_V_EF2568 cyste 99.7 4.3E-15 9.3E-20 126.2 18.2 211 2-237 128-375 (376)
223 COG0160 GabT 4-aminobutyrate a 99.7 4.7E-15 1E-19 125.5 17.8 203 22-242 238-446 (447)
224 PRK05968 hypothetical protein; 99.7 1.2E-14 2.5E-19 123.8 20.1 195 18-241 155-386 (389)
225 TIGR01437 selA_rel uncharacter 99.7 3.7E-15 8E-20 125.8 16.7 209 2-238 139-362 (363)
226 PRK07671 cystathionine beta-ly 99.7 1.5E-14 3.2E-19 122.7 20.1 145 2-169 125-275 (377)
227 PRK13580 serine hydroxymethylt 99.7 1.6E-14 3.6E-19 123.8 20.5 218 2-241 210-445 (493)
228 cd06450 DOPA_deC_like DOPA dec 99.7 9.6E-16 2.1E-20 128.7 12.8 189 12-237 153-344 (345)
229 COG0520 csdA Selenocysteine ly 99.7 2.7E-14 5.9E-19 121.4 21.2 212 2-240 153-404 (405)
230 PRK05939 hypothetical protein; 99.7 9.7E-15 2.1E-19 124.4 18.4 152 2-169 122-293 (397)
231 PRK06541 hypothetical protein; 99.7 2E-14 4.4E-19 124.6 20.1 215 12-245 225-459 (460)
232 TIGR01324 cysta_beta_ly_B cyst 99.7 2.4E-14 5.2E-19 121.1 20.0 144 2-169 126-275 (377)
233 KOG1412 Aspartate aminotransfe 99.7 6.7E-15 1.4E-19 116.3 15.3 207 12-243 183-407 (410)
234 PRK00451 glycine dehydrogenase 99.7 4.4E-15 9.6E-20 128.9 15.8 208 2-239 195-446 (447)
235 PRK05769 4-aminobutyrate amino 99.6 3.4E-14 7.4E-19 122.7 19.5 200 20-242 234-440 (441)
236 PRK08593 4-aminobutyrate amino 99.6 3.2E-14 6.9E-19 123.0 19.2 204 18-243 218-431 (445)
237 PRK03715 argD acetylornithine 99.6 1.7E-14 3.7E-19 123.0 17.3 202 12-242 183-394 (395)
238 TIGR02006 IscS cysteine desulf 99.6 2.4E-14 5.2E-19 122.7 17.9 212 2-243 133-379 (402)
239 PRK06176 cystathionine gamma-s 99.6 3.7E-14 8E-19 120.3 18.7 141 2-165 125-271 (380)
240 TIGR03235 DNA_S_dndA cysteine 99.6 2.8E-15 6E-20 126.4 11.2 202 2-231 129-348 (353)
241 PRK06702 O-acetylhomoserine am 99.6 3.7E-14 8E-19 121.3 17.7 151 2-169 138-319 (432)
242 PRK07050 cystathionine beta-ly 99.6 5.9E-14 1.3E-18 119.6 18.6 140 3-165 142-287 (394)
243 PRK05967 cystathionine beta-ly 99.6 1.9E-13 4.1E-18 115.8 19.9 144 2-169 140-289 (395)
244 PRK05994 O-acetylhomoserine am 99.6 2.6E-13 5.5E-18 116.8 20.8 152 2-169 139-321 (427)
245 PLN02760 4-aminobutyrate:pyruv 99.6 8E-14 1.7E-18 121.9 17.7 201 21-243 274-493 (504)
246 PLN02509 cystathionine beta-ly 99.6 1.2E-13 2.6E-18 119.2 18.6 145 2-169 208-358 (464)
247 PRK14012 cysteine desulfurase; 99.6 8.7E-14 1.9E-18 119.3 17.2 210 2-243 135-381 (404)
248 PRK07678 aminotransferase; Val 99.6 1.8E-13 3.8E-18 118.6 18.1 206 23-242 230-450 (451)
249 PF01053 Cys_Met_Meta_PP: Cys/ 99.6 5.2E-13 1.1E-17 112.8 20.3 206 2-240 131-386 (386)
250 PRK11522 putrescine--2-oxoglut 99.6 3.8E-13 8.2E-18 116.5 20.0 198 21-244 245-454 (459)
251 KOG1402 Ornithine aminotransfe 99.6 1.6E-13 3.4E-18 109.4 15.9 204 18-240 218-426 (427)
252 PRK07812 O-acetylhomoserine am 99.6 2.9E-13 6.2E-18 116.4 18.4 152 2-169 146-326 (436)
253 PRK07986 adenosylmethionine--8 99.6 3.1E-13 6.7E-18 116.1 18.0 192 21-241 219-423 (428)
254 PF00266 Aminotran_5: Aminotra 99.6 6.3E-13 1.4E-17 112.8 19.7 202 2-230 130-370 (371)
255 PRK05630 adenosylmethionine--8 99.6 5E-13 1.1E-17 114.8 18.9 194 19-241 213-420 (422)
256 PRK06105 aminotransferase; Pro 99.5 5.7E-13 1.2E-17 115.7 18.4 202 21-244 232-452 (460)
257 PRK13360 omega amino acid--pyr 99.5 9.3E-13 2E-17 113.8 19.3 199 21-242 229-441 (442)
258 TIGR03372 putres_am_tran putre 99.5 7.8E-13 1.7E-17 113.9 18.7 196 21-239 238-442 (442)
259 KOG1359 Glycine C-acetyltransf 99.5 6.7E-13 1.5E-17 104.4 16.3 198 20-242 206-413 (417)
260 PRK05965 hypothetical protein; 99.5 8.7E-13 1.9E-17 114.5 18.8 202 20-243 228-449 (459)
261 PRK05639 4-aminobutyrate amino 99.5 9.7E-13 2.1E-17 114.0 19.0 202 21-243 236-445 (457)
262 PRK06173 adenosylmethionine--8 99.5 1.3E-12 2.9E-17 112.3 19.6 197 20-243 220-427 (429)
263 KOG1411 Aspartate aminotransfe 99.5 2.3E-14 5.1E-19 114.7 7.6 203 15-238 206-422 (427)
264 PRK06082 4-aminobutyrate amino 99.5 1.2E-12 2.6E-17 113.5 18.9 204 20-244 242-454 (459)
265 PRK09221 beta alanine--pyruvat 99.5 1.3E-12 2.9E-17 112.9 19.1 200 20-242 231-444 (445)
266 COG0161 BioA Adenosylmethionin 99.5 4.3E-13 9.2E-18 113.2 15.4 206 20-244 228-446 (449)
267 COG1104 NifS Cysteine sulfinat 99.5 1.9E-12 4E-17 107.2 18.4 220 2-244 132-380 (386)
268 COG0626 MetC Cystathionine bet 99.5 2.7E-12 5.9E-17 107.6 19.4 136 12-170 154-292 (396)
269 PRK12403 putative aminotransfe 99.5 4.6E-12 9.9E-17 110.1 20.8 204 21-244 236-455 (460)
270 PRK08297 L-lysine aminotransfe 99.5 1.7E-12 3.7E-17 112.2 18.0 193 22-242 241-442 (443)
271 PRK08742 adenosylmethionine--8 99.5 1.5E-12 3.4E-17 113.0 17.8 205 18-242 248-468 (472)
272 PRK06943 adenosylmethionine--8 99.5 3.7E-12 8E-17 110.4 20.1 199 20-243 235-448 (453)
273 PRK07482 hypothetical protein; 99.5 4.2E-12 9.2E-17 110.3 20.3 206 21-244 234-457 (461)
274 PRK07483 hypothetical protein; 99.5 1.9E-12 4.2E-17 111.9 17.9 208 22-244 216-440 (443)
275 PRK08114 cystathionine beta-ly 99.5 5.2E-12 1.1E-16 107.0 19.8 144 2-169 138-289 (395)
276 PRK07480 putative aminotransfe 99.5 2.6E-12 5.7E-17 111.4 18.3 204 20-244 232-451 (456)
277 PRK06062 hypothetical protein; 99.5 1.9E-12 4.1E-17 112.2 17.3 198 23-243 231-447 (451)
278 PLN02651 cysteine desulfurase 99.5 7.6E-13 1.6E-17 112.0 14.5 197 2-228 129-363 (364)
279 PTZ00094 serine hydroxymethylt 99.5 5.6E-12 1.2E-16 109.6 20.2 215 2-241 172-408 (452)
280 TIGR00508 bioA adenosylmethion 99.5 3.8E-12 8.2E-17 109.7 18.8 191 23-241 225-426 (427)
281 PRK13034 serine hydroxymethylt 99.5 6.9E-12 1.5E-16 107.8 20.2 194 28-241 184-392 (416)
282 PRK06149 hypothetical protein; 99.5 4E-12 8.7E-17 119.4 20.1 207 16-241 754-970 (972)
283 PRK06938 diaminobutyrate--2-ox 99.5 4.7E-12 1E-16 109.9 18.2 204 21-242 245-461 (464)
284 PRK08134 O-acetylhomoserine am 99.5 1.1E-11 2.4E-16 106.6 20.3 148 2-165 140-318 (433)
285 PRK07481 hypothetical protein; 99.5 5E-12 1.1E-16 109.6 18.1 198 21-242 227-446 (449)
286 PRK07030 adenosylmethionine--8 99.5 1.2E-11 2.6E-16 107.5 19.6 199 21-242 229-447 (466)
287 KOG0053 Cystathionine beta-lya 99.5 8.8E-12 1.9E-16 103.5 17.6 140 2-164 153-298 (409)
288 PRK07036 hypothetical protein; 99.5 1.4E-11 3.1E-16 107.1 19.6 201 21-243 234-454 (466)
289 PRK06931 diaminobutyrate--2-ox 99.4 8.7E-12 1.9E-16 108.2 17.9 205 22-244 241-457 (459)
290 PRK06917 hypothetical protein; 99.4 1.5E-11 3.3E-16 106.5 19.3 204 23-244 217-440 (447)
291 TIGR01814 kynureninase kynuren 99.4 1.3E-11 2.9E-16 106.0 18.6 195 12-239 176-405 (406)
292 PRK06148 hypothetical protein; 99.4 1.7E-11 3.7E-16 115.4 20.6 208 16-242 794-1011(1013)
293 PRK12389 glutamate-1-semialdeh 99.4 1.3E-11 2.9E-16 106.4 17.8 199 20-241 213-427 (428)
294 PRK04013 argD acetylornithine/ 99.4 1.7E-11 3.6E-16 103.3 17.5 181 22-242 178-361 (364)
295 PRK06916 adenosylmethionine--8 99.4 1.2E-11 2.7E-16 107.4 17.2 201 20-243 237-457 (460)
296 cd00616 AHBA_syn 3-amino-5-hyd 99.4 2.9E-11 6.3E-16 101.8 18.6 193 17-236 113-352 (352)
297 PRK04366 glycine dehydrogenase 99.4 3.3E-11 7.2E-16 105.4 19.5 218 2-243 199-450 (481)
298 PRK07046 aminotransferase; Val 99.4 2.4E-11 5.2E-16 105.3 18.2 200 22-243 234-452 (453)
299 TIGR02379 ECA_wecE TDP-4-keto- 99.4 3.9E-11 8.4E-16 101.8 19.1 206 2-239 110-375 (376)
300 PRK00615 glutamate-1-semialdeh 99.4 1.3E-11 2.9E-16 106.2 16.4 200 21-243 215-430 (433)
301 TIGR03251 LAT_fam L-lysine 6-t 99.4 2.6E-11 5.6E-16 104.7 18.0 187 23-237 235-430 (431)
302 PRK05613 O-acetylhomoserine am 99.4 6.9E-11 1.5E-15 101.8 20.5 150 2-167 146-329 (437)
303 PLN03226 serine hydroxymethylt 99.4 3.7E-11 8.1E-16 104.5 19.0 198 20-241 194-419 (475)
304 KOG1368 Threonine aldolase [Am 99.4 1.5E-11 3.3E-16 97.0 14.7 202 12-239 160-366 (384)
305 PRK06209 glutamate-1-semialdeh 99.4 2.7E-11 5.9E-16 104.6 15.9 195 21-243 198-407 (431)
306 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.4 8.1E-11 1.7E-15 100.0 18.3 210 2-239 110-374 (375)
307 COG0001 HemL Glutamate-1-semia 99.4 6.7E-11 1.5E-15 99.0 17.2 199 23-244 217-431 (432)
308 PLN02974 adenosylmethionine-8- 99.3 6.6E-11 1.4E-15 108.2 17.6 202 18-239 596-816 (817)
309 TIGR00699 GABAtrns_euk 4-amino 99.3 2.2E-11 4.8E-16 105.3 13.8 191 20-239 264-464 (464)
310 PRK11658 UDP-4-amino-4-deoxy-L 99.3 2.2E-10 4.7E-15 97.5 19.4 215 2-239 112-377 (379)
311 COG2008 GLY1 Threonine aldolas 99.3 7.5E-11 1.6E-15 95.9 15.1 194 18-239 141-341 (342)
312 PLN02482 glutamate-1-semialdeh 99.3 1E-10 2.2E-15 101.6 17.1 200 20-241 259-473 (474)
313 KOG1404 Alanine-glyoxylate ami 99.3 3E-10 6.4E-15 92.9 17.8 193 23-235 229-432 (442)
314 PRK03080 phosphoserine aminotr 99.3 2.6E-10 5.7E-15 97.0 17.5 206 12-245 141-377 (378)
315 COG2873 MET17 O-acetylhomoseri 99.3 3.1E-10 6.7E-15 92.4 16.6 151 2-169 138-320 (426)
316 PRK06434 cystathionine gamma-l 99.3 4.5E-10 9.7E-15 95.2 18.1 134 12-170 153-288 (384)
317 KOG1357 Serine palmitoyltransf 99.3 3.8E-11 8.1E-16 99.7 11.0 191 28-238 294-499 (519)
318 TIGR03531 selenium_SpcS O-phos 99.3 4.8E-10 1E-14 96.2 16.7 219 2-238 192-443 (444)
319 TIGR03588 PseC UDP-4-keto-6-de 99.2 1.3E-09 2.8E-14 92.9 19.2 198 16-239 127-380 (380)
320 TIGR01366 serC_3 phosphoserine 99.2 7.9E-10 1.7E-14 93.4 17.6 200 12-241 133-360 (361)
321 COG0075 Serine-pyruvate aminot 99.2 7.5E-09 1.6E-13 86.5 20.6 222 2-243 120-365 (383)
322 TIGR01364 serC_1 phosphoserine 99.2 1.7E-09 3.7E-14 90.9 16.7 195 12-241 135-348 (349)
323 PRK05355 3-phosphoserine/phosp 99.2 1.9E-09 4.1E-14 91.0 16.3 196 12-242 146-359 (360)
324 PRK13237 tyrosine phenol-lyase 99.2 6.8E-09 1.5E-13 88.7 19.6 223 2-242 164-434 (460)
325 cd00615 Orn_deC_like Ornithine 99.1 1.9E-10 4E-15 94.6 8.5 132 12-158 159-293 (294)
326 TIGR02618 tyr_phenol_ly tyrosi 99.1 9.6E-09 2.1E-13 87.5 18.6 223 2-242 157-427 (450)
327 PLN02724 Molybdenum cofactor s 99.1 8E-09 1.7E-13 95.7 18.5 210 12-240 197-487 (805)
328 KOG1401 Acetylornithine aminot 99.0 7.8E-09 1.7E-13 85.3 13.6 197 23-242 223-431 (433)
329 PF00464 SHMT: Serine hydroxym 99.0 3E-08 6.5E-13 83.7 17.1 195 27-234 184-398 (399)
330 PLN02271 serine hydroxymethylt 99.0 5.2E-08 1.1E-12 84.9 18.8 211 12-240 303-539 (586)
331 cd00611 PSAT_like Phosphoserin 99.0 2.3E-08 5E-13 84.4 16.4 192 12-238 143-353 (355)
332 PRK04311 selenocysteine syntha 99.0 5.7E-08 1.2E-12 84.3 17.4 220 2-240 207-463 (464)
333 PRK15407 lipopolysaccharide bi 98.9 2.2E-07 4.7E-12 80.5 19.7 211 2-240 150-435 (438)
334 PLN02880 tyrosine decarboxylas 98.9 1.3E-07 2.7E-12 83.0 17.0 219 12-244 244-487 (490)
335 COG0399 WecE Predicted pyridox 98.9 7.6E-07 1.7E-11 74.6 20.7 208 2-241 113-373 (374)
336 KOG1403 Predicted alanine-glyo 98.9 5E-07 1.1E-11 72.0 18.4 207 19-241 221-437 (452)
337 TIGR01788 Glu-decarb-GAD gluta 98.9 2.4E-07 5.3E-12 79.8 18.0 225 2-242 177-430 (431)
338 COG0112 GlyA Glycine/serine hy 98.9 2.6E-07 5.5E-12 76.3 17.1 194 28-241 182-390 (413)
339 PLN02414 glycine dehydrogenase 98.9 2.9E-07 6.3E-12 86.0 19.4 219 2-243 654-909 (993)
340 PF00202 Aminotran_3: Aminotra 98.8 1.4E-08 3E-13 85.1 8.8 101 22-135 193-294 (339)
341 KOG1358 Serine palmitoyltransf 98.8 4.5E-08 9.8E-13 80.3 9.7 204 18-241 244-465 (467)
342 PRK02769 histidine decarboxyla 98.8 1.7E-06 3.6E-11 73.6 18.8 193 12-240 165-371 (380)
343 PLN02590 probable tyrosine dec 98.8 1.7E-06 3.6E-11 76.4 19.2 219 12-243 292-534 (539)
344 KOG1549 Cysteine desulfurase N 98.8 2.3E-07 5E-12 77.8 12.9 82 2-95 172-257 (428)
345 PRK12566 glycine dehydrogenase 98.7 1.1E-06 2.4E-11 81.0 18.1 221 2-243 629-878 (954)
346 PLN02452 phosphoserine transam 98.7 6.9E-07 1.5E-11 75.4 14.9 189 18-241 156-363 (365)
347 cd01494 AAT_I Aspartate aminot 98.7 4.5E-08 9.8E-13 73.2 6.4 73 12-93 97-169 (170)
348 TIGR00474 selA seryl-tRNA(sec) 98.7 1.6E-06 3.5E-11 75.2 16.5 215 2-235 202-453 (454)
349 PF01041 DegT_DnrJ_EryC1: DegT 98.6 3.7E-06 8.1E-11 71.3 17.0 177 2-209 104-310 (363)
350 PRK05367 glycine dehydrogenase 98.6 5.7E-06 1.2E-10 77.6 18.9 211 12-243 645-877 (954)
351 PF01276 OKR_DC_1: Orn/Lys/Arg 98.6 5.6E-07 1.2E-11 76.5 10.6 142 12-165 173-325 (417)
352 PRK15029 arginine decarboxylas 98.6 1.1E-05 2.4E-10 73.6 19.3 76 12-94 317-399 (755)
353 KOG1405 4-aminobutyrate aminot 98.5 5.5E-06 1.2E-10 67.6 14.8 193 22-240 287-482 (484)
354 TIGR02617 tnaA_trp_ase tryptop 98.5 1.2E-05 2.5E-10 68.6 17.1 208 19-242 196-442 (467)
355 KOG2862 Alanine-glyoxylate ami 98.5 4.1E-05 8.8E-10 61.6 18.4 205 12-241 147-382 (385)
356 PRK05367 glycine dehydrogenase 98.5 8E-06 1.7E-10 76.7 16.8 190 12-236 211-437 (954)
357 TIGR03799 NOD_PanD_pyr putativ 98.4 2.1E-05 4.5E-10 69.5 17.3 205 15-233 273-517 (522)
358 PRK12462 phosphoserine aminotr 98.4 2.6E-05 5.6E-10 65.6 15.5 187 19-240 155-361 (364)
359 TIGR00461 gcvP glycine dehydro 98.4 0.00011 2.3E-09 68.6 20.6 219 2-243 616-869 (939)
360 TIGR01365 serC_2 phosphoserine 98.3 6.7E-05 1.5E-09 63.6 17.3 199 18-239 138-371 (374)
361 COG1103 Archaea-specific pyrid 98.3 7.7E-05 1.7E-09 59.0 15.7 205 12-242 161-381 (382)
362 PLN03032 serine decarboxylase; 98.3 8.2E-05 1.8E-09 63.1 16.5 201 2-236 149-371 (374)
363 KOG2467 Glycine/serine hydroxy 98.2 0.00019 4.1E-09 59.1 16.4 197 28-240 205-425 (477)
364 PLN02414 glycine dehydrogenase 98.2 0.00016 3.6E-09 68.0 18.0 189 12-236 239-464 (993)
365 PRK15400 lysine decarboxylase 98.2 0.0002 4.3E-09 65.1 17.3 73 12-92 302-378 (714)
366 COG3844 Kynureninase [Amino ac 98.1 0.00027 5.8E-09 57.5 15.7 207 12-243 171-404 (407)
367 PRK15399 lysine decarboxylase 98.1 0.0011 2.3E-08 60.4 20.9 75 12-95 302-381 (713)
368 COG0076 GadB Glutamate decarbo 98.1 0.00013 2.8E-09 63.5 14.5 156 12-180 212-380 (460)
369 PRK13578 ornithine decarboxyla 98.0 0.00062 1.3E-08 62.0 17.5 75 12-93 287-367 (720)
370 PLN02263 serine decarboxylase 98.0 0.0017 3.7E-08 56.5 19.4 196 12-242 233-444 (470)
371 COG3033 TnaA Tryptophanase [Am 98.0 0.00031 6.7E-09 57.8 13.4 209 18-241 197-444 (471)
372 KOG1383 Glutamate decarboxylas 97.9 0.0016 3.4E-08 55.4 16.9 213 12-243 223-448 (491)
373 COG1982 LdcC Arginine/lysine/o 97.7 0.0075 1.6E-07 53.2 17.9 207 12-241 171-404 (557)
374 TIGR00461 gcvP glycine dehydro 97.7 0.0038 8.3E-08 58.6 16.8 89 135-236 336-426 (939)
375 PF01212 Beta_elim_lyase: Beta 97.6 1.9E-05 4E-10 64.7 1.3 138 12-163 129-273 (290)
376 PF05889 SLA_LP_auto_ag: Solub 97.6 0.0088 1.9E-07 50.4 15.9 195 28-240 173-389 (389)
377 COG1932 SerC Phosphoserine ami 97.5 0.0083 1.8E-07 49.7 14.5 152 72-241 193-363 (365)
378 PF06838 Met_gamma_lyase: Meth 97.4 0.00087 1.9E-08 55.5 8.5 97 2-113 145-249 (403)
379 PF00282 Pyridoxal_deC: Pyrido 97.4 0.003 6.5E-08 53.8 11.9 147 12-172 199-366 (373)
380 PF03841 SelA: L-seryl-tRNA se 97.3 0.00096 2.1E-08 55.6 6.9 148 3-160 128-296 (367)
381 KOG0628 Aromatic-L-amino-acid/ 97.3 0.058 1.3E-06 46.2 17.2 95 143-243 376-473 (511)
382 COG1921 SelA Selenocysteine sy 97.1 0.0062 1.4E-07 51.3 10.0 119 28-159 175-298 (395)
383 KOG0629 Glutamate decarboxylas 96.9 0.015 3.2E-07 49.3 10.4 203 26-238 269-506 (510)
384 PF02347 GDC-P: Glycine cleava 96.4 0.24 5.2E-06 42.8 15.0 191 12-234 202-428 (429)
385 PRK12566 glycine dehydrogenase 96.4 0.28 6E-06 46.5 16.2 88 135-236 350-439 (954)
386 KOG2790 Phosphoserine aminotra 95.4 0.23 5E-06 40.1 9.6 154 71-242 197-369 (370)
387 COG0403 GcvP Glycine cleavage 93.4 4.7 0.0001 34.7 17.3 90 136-237 354-446 (450)
388 COG4100 Cystathionine beta-lya 93.4 0.14 3E-06 41.7 4.4 73 23-110 182-257 (416)
389 COG1003 GcvP Glycine cleavage 93.3 4.9 0.00011 34.8 15.7 205 12-243 209-449 (496)
390 KOG3843 Predicted serine hydro 92.4 0.075 1.6E-06 42.4 1.6 218 12-244 158-405 (432)
391 TIGR03811 tyr_de_CO2_Ent tyros 83.6 36 0.00078 31.3 15.8 39 12-53 283-326 (608)
392 COG0296 GlgB 1,4-alpha-glucan 79.3 3.3 7.1E-05 37.7 4.5 38 19-56 206-243 (628)
393 smart00642 Aamy Alpha-amylase 66.7 9.3 0.0002 28.5 3.8 29 25-53 68-96 (166)
394 PF06153 DUF970: Protein of un 63.4 13 0.00028 25.7 3.6 54 190-243 12-68 (109)
395 cd06568 GH20_SpHex_like A subg 61.0 12 0.00025 31.5 3.7 28 19-46 67-94 (329)
396 PF03460 NIR_SIR_ferr: Nitrite 60.1 6.1 0.00013 24.4 1.5 25 16-41 14-38 (69)
397 cd06563 GH20_chitobiase-like T 59.1 11 0.00025 31.9 3.4 28 19-46 78-105 (357)
398 PLN03244 alpha-amylase; Provis 58.9 16 0.00036 34.4 4.5 38 18-55 432-469 (872)
399 cd02742 GH20_hexosaminidase Be 57.4 14 0.0003 30.6 3.6 28 19-46 64-91 (303)
400 TIGR02402 trehalose_TreZ malto 56.9 21 0.00046 32.2 4.9 36 19-54 152-187 (542)
401 TIGR02104 pulA_typeI pullulana 56.6 14 0.00031 33.8 3.8 28 26-53 228-255 (605)
402 PF14097 SpoVAE: Stage V sporu 56.4 26 0.00057 26.2 4.4 80 12-95 28-110 (180)
403 PF00128 Alpha-amylase: Alpha 56.1 10 0.00022 30.8 2.6 33 23-55 48-80 (316)
404 cd06564 GH20_DspB_LnbB-like Gl 51.3 18 0.00039 30.3 3.3 27 19-45 74-100 (326)
405 PHA02938 hypothetical protein; 50.4 1.2E+02 0.0027 24.8 7.5 75 74-160 53-137 (361)
406 cd06569 GH20_Sm-chitobiase-lik 50.2 21 0.00046 31.4 3.7 27 19-45 89-115 (445)
407 COG4050 Uncharacterized protei 50.1 76 0.0016 22.2 5.5 45 190-245 106-150 (152)
408 PF14258 DUF4350: Domain of un 50.0 26 0.00057 21.6 3.2 23 24-46 47-70 (70)
409 COG0159 TrpA Tryptophan syntha 49.0 1.4E+02 0.0031 24.2 7.9 94 24-134 131-229 (265)
410 cd01422 MGS Methylglyoxal synt 48.3 27 0.00059 24.2 3.3 33 12-45 74-106 (115)
411 PLN02960 alpha-amylase 48.0 34 0.00074 32.7 4.8 38 18-55 457-494 (897)
412 PRK09441 cytoplasmic alpha-amy 47.0 24 0.00052 31.3 3.6 29 25-53 79-107 (479)
413 cd06570 GH20_chitobiase-like_1 46.7 25 0.00055 29.2 3.5 25 21-45 62-86 (311)
414 cd06562 GH20_HexA_HexB-like Be 46.7 23 0.00049 30.0 3.3 27 20-46 63-89 (348)
415 KOG0470 1,4-alpha-glucan branc 46.5 30 0.00065 32.1 4.1 59 18-78 296-360 (757)
416 PRK05402 glycogen branching en 46.5 33 0.00072 32.3 4.5 36 19-54 307-342 (726)
417 PLN02447 1,4-alpha-glucan-bran 46.4 34 0.00074 32.2 4.5 36 19-54 292-327 (758)
418 KOG2040 Glycine dehydrogenase 45.9 2.6E+02 0.0056 26.2 12.7 87 136-236 390-478 (1001)
419 TIGR01515 branching_enzym alph 45.7 41 0.00088 31.0 4.9 36 19-54 198-233 (613)
420 PF00728 Glyco_hydro_20: Glyco 45.6 18 0.00039 30.4 2.5 25 22-46 68-92 (351)
421 PRK12313 glycogen branching en 44.6 41 0.0009 31.1 4.8 36 19-54 212-247 (633)
422 TIGR00789 flhB_rel flhB C-term 44.5 23 0.00051 23.0 2.3 27 27-53 27-53 (82)
423 PF08672 APC2: Anaphase promot 43.9 36 0.00077 20.7 2.9 35 16-50 25-59 (60)
424 PRK14706 glycogen branching en 41.2 42 0.00092 31.1 4.3 36 19-54 209-244 (639)
425 PLN00196 alpha-amylase; Provis 41.1 34 0.00075 29.9 3.6 30 24-53 89-118 (428)
426 COG2256 MGS1 ATPase related to 41.1 41 0.00089 29.1 3.8 30 22-51 82-116 (436)
427 cd04937 ACT_AKi-DapG-BS_2 ACT 40.4 82 0.0018 18.9 6.5 45 191-239 18-62 (64)
428 PRK05234 mgsA methylglyoxal sy 40.3 36 0.00078 24.7 3.0 35 12-47 79-113 (142)
429 PF08543 Phos_pyr_kin: Phospho 39.2 39 0.00085 26.9 3.4 32 19-50 65-96 (246)
430 PRK14705 glycogen branching en 39.2 52 0.0011 32.9 4.7 37 18-54 806-842 (1224)
431 PF05687 DUF822: Plant protein 38.2 1.6E+02 0.0034 21.5 6.4 23 189-211 46-69 (150)
432 PF09885 DUF2112: Uncharacteri 38.2 1.5E+02 0.0032 21.3 5.6 41 190-241 102-142 (143)
433 PF04237 YjbR: YjbR; InterPro 37.3 95 0.0021 20.2 4.6 44 190-234 42-87 (92)
434 PRK10785 maltodextrin glucosid 37.1 47 0.001 30.5 4.0 29 25-53 224-252 (598)
435 PF13872 AAA_34: P-loop contai 36.8 26 0.00056 29.0 2.0 29 26-54 158-187 (303)
436 COG2257 Uncharacterized homolo 36.2 27 0.00058 23.1 1.6 24 28-51 33-56 (92)
437 PRK12568 glycogen branching en 35.8 57 0.0012 30.7 4.2 37 19-55 311-347 (730)
438 cd06565 GH20_GcnA-like Glycosy 35.3 42 0.00092 27.7 3.1 25 21-45 54-78 (301)
439 TIGR02064 dsrA sulfite reducta 35.3 35 0.00076 29.6 2.7 26 15-40 85-110 (402)
440 PLN02361 alpha-amylase 35.3 47 0.001 28.8 3.5 29 24-52 73-101 (401)
441 PLN02672 methionine S-methyltr 35.1 75 0.0016 31.5 5.0 100 21-127 538-642 (1082)
442 COG0352 ThiE Thiamine monophos 34.8 47 0.001 26.0 3.1 63 26-95 51-114 (211)
443 TIGR00097 HMP-P_kinase phospho 34.4 47 0.001 26.5 3.2 31 19-49 72-103 (254)
444 PRK09505 malS alpha-amylase; R 34.3 53 0.0011 30.7 3.8 30 25-54 290-319 (683)
445 PF00150 Cellulase: Cellulase 34.3 43 0.00094 26.7 3.0 23 27-49 62-84 (281)
446 cd04915 ACT_AK-Ectoine_2 ACT d 34.3 1.1E+02 0.0024 18.6 5.6 45 193-239 20-64 (66)
447 PF04015 DUF362: Domain of unk 32.7 71 0.0015 24.5 3.9 29 20-48 16-45 (206)
448 TIGR02102 pullulan_Gpos pullul 32.3 67 0.0014 31.9 4.2 28 26-53 554-581 (1111)
449 TIGR00612 ispG_gcpE 1-hydroxy- 32.0 51 0.0011 27.7 3.0 30 12-45 97-126 (346)
450 cd04920 ACT_AKiii-DAPDC_2 ACT 31.9 1.2E+02 0.0026 18.2 5.2 43 193-239 19-61 (63)
451 TIGR00334 5S_RNA_mat_M5 ribonu 31.8 67 0.0014 24.3 3.3 31 21-51 30-60 (174)
452 COG1088 RfbB dTDP-D-glucose 4, 31.7 53 0.0011 27.3 3.0 32 30-61 106-142 (340)
453 TIGR02456 treS_nterm trehalose 31.4 66 0.0014 29.1 3.9 29 25-53 74-102 (539)
454 PF13549 ATP-grasp_5: ATP-gras 31.4 1.3E+02 0.0028 23.7 5.1 52 190-242 11-91 (222)
455 PF15640 Tox-MPTase4: Metallop 30.8 1.7E+02 0.0037 20.8 4.9 31 18-48 12-43 (132)
456 COG0549 ArcC Carbamate kinase 30.7 76 0.0016 26.1 3.7 33 12-47 123-155 (312)
457 cd01169 HMPP_kinase 4-amino-5- 30.3 61 0.0013 25.4 3.2 30 20-49 74-104 (242)
458 PF07745 Glyco_hydro_53: Glyco 30.2 1.1E+02 0.0023 25.9 4.7 43 12-56 45-87 (332)
459 TIGR02100 glgX_debranch glycog 30.1 72 0.0016 29.9 4.0 30 25-54 243-272 (688)
460 PF05172 Nup35_RRM: Nup53/35/4 30.1 1.7E+02 0.0036 19.9 4.8 29 168-205 50-78 (100)
461 PRK10933 trehalose-6-phosphate 29.8 69 0.0015 29.1 3.7 30 25-54 79-108 (551)
462 KOG2040 Glycine dehydrogenase 29.4 4.9E+02 0.011 24.6 13.3 100 139-242 815-919 (1001)
463 TIGR02403 trehalose_treC alpha 29.2 73 0.0016 28.8 3.8 29 25-53 73-101 (543)
464 PRK09778 putative antitoxin of 28.4 48 0.0011 22.1 1.9 34 14-47 31-64 (97)
465 KOG3846 L-kynurenine hydrolase 28.4 3.6E+02 0.0078 22.7 14.8 48 192-243 413-463 (465)
466 PF02677 DUF208: Uncharacteriz 28.4 93 0.002 23.6 3.6 33 12-50 28-64 (176)
467 PRK12412 pyridoxal kinase; Rev 27.9 67 0.0015 25.9 3.1 30 19-48 77-107 (268)
468 TIGR03271 methan_mark_5 putati 27.7 2.3E+02 0.005 20.3 5.4 41 190-241 101-141 (142)
469 COG3870 Uncharacterized protei 27.0 2.1E+02 0.0045 19.5 7.2 54 190-243 12-68 (109)
470 PF01408 GFO_IDH_MocA: Oxidore 26.8 83 0.0018 21.4 3.1 24 22-45 95-118 (120)
471 cd04751 Commd3 COMM_Domain con 26.8 1.4E+02 0.0031 19.9 4.0 28 217-244 65-92 (95)
472 COG1880 CdhB CO dehydrogenase/ 26.2 2.1E+02 0.0045 21.3 4.9 28 23-50 46-73 (170)
473 PF12427 DUF3665: Branched-cha 26.1 50 0.0011 15.5 1.2 14 16-33 9-22 (23)
474 PF09186 DUF1949: Domain of un 25.6 1.4E+02 0.003 17.0 4.2 46 190-238 7-52 (56)
475 KOG0404 Thioredoxin reductase 25.4 1.8E+02 0.004 23.2 4.8 73 12-86 57-132 (322)
476 PRK12354 carbamate kinase; Rev 25.2 1E+02 0.0023 25.6 3.7 33 12-47 115-147 (307)
477 PF02344 Myc-LZ: Myc leucine z 25.2 1.1E+02 0.0024 15.8 3.2 24 137-160 4-27 (32)
478 PRK14510 putative bifunctional 25.2 1.8E+02 0.0038 29.5 5.8 31 25-55 245-275 (1221)
479 PRK12454 carbamate kinase-like 24.9 1.1E+02 0.0024 25.6 3.8 32 12-46 124-155 (313)
480 COG2240 PdxK Pyridoxal/pyridox 24.9 79 0.0017 25.9 2.9 44 12-55 39-84 (281)
481 PRK00366 ispG 4-hydroxy-3-meth 24.8 82 0.0018 26.7 3.0 30 14-47 107-137 (360)
482 PF01650 Peptidase_C13: Peptid 24.8 2.5E+02 0.0054 22.7 5.8 36 20-55 126-165 (256)
483 COG0351 ThiD Hydroxymethylpyri 24.8 91 0.002 25.3 3.2 30 18-47 76-106 (263)
484 PF03786 UxuA: D-mannonate deh 24.6 71 0.0015 27.1 2.7 36 12-47 30-65 (351)
485 cd00532 MGS-like MGS-like doma 24.3 1.1E+02 0.0023 21.0 3.2 35 12-47 72-106 (112)
486 TIGR02103 pullul_strch alpha-1 24.0 1.4E+02 0.003 29.0 4.7 30 27-56 404-433 (898)
487 PRK06427 bifunctional hydroxy- 23.8 90 0.002 25.0 3.1 31 19-49 78-109 (266)
488 PRK08573 phosphomethylpyrimidi 23.5 87 0.0019 27.6 3.2 33 18-50 75-107 (448)
489 COG1523 PulA Type II secretory 23.4 3.1E+02 0.0067 25.9 6.7 40 12-55 254-293 (697)
490 smart00839 ELFV_dehydrog Gluta 23.3 2.4E+02 0.0053 19.0 6.5 49 194-243 40-96 (102)
491 TIGR00629 uvde UV damage endon 22.9 90 0.0019 26.1 2.9 30 18-50 193-222 (312)
492 PRK00014 ribB 3,4-dihydroxy-2- 22.8 1.1E+02 0.0024 24.3 3.2 26 18-46 182-207 (230)
493 PRK13111 trpA tryptophan synth 22.6 4.2E+02 0.009 21.4 7.6 21 24-44 126-146 (258)
494 cd01019 ZnuA Zinc binding prot 22.0 3.9E+02 0.0084 21.8 6.5 25 17-45 35-59 (286)
495 PRK09213 pur operon repressor; 22.0 4.3E+02 0.0092 21.6 6.6 49 189-241 42-93 (271)
496 TIGR00160 MGSA methylglyoxal s 21.9 95 0.0021 22.6 2.5 38 18-55 82-119 (143)
497 cd04918 ACT_AK1-AT_2 ACT domai 21.6 2E+02 0.0042 17.3 5.3 45 193-239 19-63 (65)
498 COG3589 Uncharacterized conser 21.6 53 0.0012 27.6 1.3 84 27-132 49-132 (360)
499 PRK04358 hypothetical protein; 21.5 1.2E+02 0.0026 23.8 3.1 27 20-47 156-182 (217)
500 PF10421 OAS1_C: 2'-5'-oligoad 21.5 1E+02 0.0022 23.7 2.8 28 12-39 139-168 (190)
No 1
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-45 Score=309.50 Aligned_cols=229 Identities=25% Similarity=0.381 Sum_probs=202.2
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s 76 (246)
|.+++.++++ ++|+||||||.+++++++++|+++|++||++||+||+|.++.|++..+.++..+.+ .+++|.+.|
T Consensus 154 ~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s 233 (393)
T COG0436 154 EDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINS 233 (393)
T ss_pred HHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEec
Confidence 5677777875 99999999999999999999999999999999999999999999865556655554 578999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCC 154 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~ 154 (246)
|||.|+++|||+||+++++. ++++.+...+. .+++++.+.|.++..+|+... ....+..++.+++||+.+.
T Consensus 234 ~SK~~~mtGwRvG~~v~~~~-------~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~ 306 (393)
T COG0436 234 FSKTYGMTGWRIGWVVGPPE-------ELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLV 306 (393)
T ss_pred ccccccccccceeEeecChH-------HHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999942 88888875544 455899999999999999754 3688888899999999999
Q ss_pred HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCC---CeEEEEeecChHHHHHH
Q 042445 155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK---DWLRITFAVEPSALENG 231 (246)
Q Consensus 155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~---~~iRls~~~~~~~l~~~ 231 (246)
+.|.+++|+.++..|+|++|+|++++.. .++.+++.++|+++||.|.||..|+.+ +++|+|++.+++.++++
T Consensus 307 ~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~-----~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a 381 (393)
T COG0436 307 EALNEIGGLSVVKPPEGAFYLFPKIPEL-----LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEA 381 (393)
T ss_pred HHHHhcCCeeeccCCCeeEEEEeecCCC-----CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHH
Confidence 9999988888655699999999999864 268999999999999999999999974 89999999988999999
Q ss_pred HHHHHHHHHHH
Q 042445 232 LGRMKAFYDRH 242 (246)
Q Consensus 232 ~~~l~~~~~~~ 242 (246)
++++.++++..
T Consensus 382 ~~rl~~~~~~~ 392 (393)
T COG0436 382 LRRLARFLAEY 392 (393)
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 2
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-44 Score=286.82 Aligned_cols=244 Identities=54% Similarity=0.918 Sum_probs=228.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ +++|||||+|.++|.+-+++|+++|+++++.||.||+|.++.|++.++.++..+.....+++++|+
T Consensus 190 ~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggi 269 (447)
T KOG0259|consen 190 DGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGI 269 (447)
T ss_pred HHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeeccc
Confidence 3455555554 999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
||.|..||||+||++..+...++.++..+..+.+..+.+.+++.+.|.|+-.+|....+++.......++.+.+...+.|
T Consensus 270 sKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~L 349 (447)
T KOG0259|consen 270 SKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRL 349 (447)
T ss_pred ccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999988888899998887779999999999999998778999999999999999999999
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
+++|++.+...|+|.+|+|+.++...+..+.++.+++.++.+++.+.+.||..|+.++|+|++++.+.++++++++||++
T Consensus 350 k~IP~l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~~~~leea~~Rik~ 429 (447)
T KOG0259|consen 350 KDIPCLTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNWLRIVITVEEEMLEEAFSRIKE 429 (447)
T ss_pred hcCCCcccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCeEEEEEccChHHHHHHHHHHHH
Confidence 99999998899999999999998877777788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 042445 238 FYDRHAEK 245 (246)
Q Consensus 238 ~~~~~~~~ 245 (246)
+.+++.++
T Consensus 430 Fc~RH~~~ 437 (447)
T KOG0259|consen 430 FCDRHSKE 437 (447)
T ss_pred HHHhhhhc
Confidence 99998754
No 3
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=100.00 E-value=5.4e-43 Score=300.75 Aligned_cols=244 Identities=59% Similarity=1.006 Sum_probs=200.4
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ +++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++..+.++..+....++|+++||
T Consensus 181 ~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 260 (430)
T PLN00145 181 EGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSI 260 (430)
T ss_pred HHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEecc
Confidence 3445544443 999999999999999999999999999999999999999999876556666666666789999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
||.|++||+|+||++++++..++...+++..++.....+.+++.+.|.++..+|....+.++++.++.++++++.+.+.|
T Consensus 261 SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 340 (430)
T PLN00145 261 SKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKI 340 (430)
T ss_pred ccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999985432222111123445555444446788999999999986557899999999999999999999
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
++++++.++..|+||+|+|++++...+++..++.+++.++++++||.+.||..|+.++|+|++++.+++.+++++++|.+
T Consensus 341 ~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~~~~~l~~al~rl~~ 420 (430)
T PLN00145 341 KEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAIDPPSLEDGLERLKS 420 (430)
T ss_pred hcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 99888875457999999999987533223335778888999999999999999998999999999999999999999999
Q ss_pred HHHHHhhc
Q 042445 238 FYDRHAEK 245 (246)
Q Consensus 238 ~~~~~~~~ 245 (246)
++.+++++
T Consensus 421 ~~~~~~~~ 428 (430)
T PLN00145 421 FCLRHAKL 428 (430)
T ss_pred HHHHhccc
Confidence 99988765
No 4
>PLN02187 rooty/superroot1
Probab=100.00 E-value=8.8e-42 Score=295.18 Aligned_cols=241 Identities=46% Similarity=0.827 Sum_probs=194.4
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ +++|||||||.+++.+++++|+++|++||++||+||+|.++.|++..+.++..+....++|+++||
T Consensus 195 ~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~Sf 274 (462)
T PLN02187 195 EGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGI 274 (462)
T ss_pred HHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecc
Confidence 3455555443 999999999999999999999999999999999999999999876555566556555579999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh---cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI---SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC 154 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (246)
||.|++||+|+||++++++..++ ++++.+...... +.+++.+.|.++.++|.+..+.|+++.++.++++++.+.
T Consensus 275 SK~f~~pGlRiG~~v~~~p~~~~---~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~ 351 (462)
T PLN02187 275 SKGWVVPGWKIGWIALNDPEGVF---ETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVC 351 (462)
T ss_pred hhhcCCccceeEEEEecCchhHH---HHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986531111 133455444332 224589999999999986457899999999999999999
Q ss_pred HHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHH
Q 042445 155 DRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGR 234 (246)
Q Consensus 155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~ 234 (246)
+.|++++++..+..|+||+|+|++++....++..++.+++..+++++||.+.||..|+.++|+|++++.+++++++++++
T Consensus 352 ~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~~~~e~l~~al~r 431 (462)
T PLN02187 352 DRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWMRITIGVEAHMLEDALER 431 (462)
T ss_pred HHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeEEEEeCCCHHHHHHHHHH
Confidence 99999865543457899999999886422112224667888899999999999999988999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 042445 235 MKAFYDRHAEK 245 (246)
Q Consensus 235 l~~~~~~~~~~ 245 (246)
|.++++++.++
T Consensus 432 L~~~l~~~~~~ 442 (462)
T PLN02187 432 LKGFCTRHAKK 442 (462)
T ss_pred HHHHHHHhhhc
Confidence 99999888754
No 5
>PLN02656 tyrosine transaminase
Probab=100.00 E-value=1.4e-41 Score=290.85 Aligned_cols=235 Identities=63% Similarity=1.060 Sum_probs=195.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||.++|.+++++|+++|+++|++||+||+|.++.+++..+.++..++...++|+++||||.|++||+|+||+
T Consensus 174 ~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~ 253 (409)
T PLN02656 174 VIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWF 253 (409)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEE
Confidence 88999999999999999999999999999999999999999998755555555555668999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
+++++...+.++++++.+........+++.+.|.++..+|++..+.++++.++.++++++.+.+.|++++++..+..|+|
T Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~g 333 (409)
T PLN02656 254 VTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEG 333 (409)
T ss_pred EEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCe
Confidence 99642111111167788876654444689999999999998655788999999999999999999998865543458999
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHhhcC
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEKQ 246 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~~~ 246 (246)
|+|+|++++.....+..++.+++..+++++||.+.||+.|+.++++|++++.+++++++++++|.+++.++..+|
T Consensus 334 g~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~~~e~l~eal~rl~~~~~~~~~~~ 408 (409)
T PLN02656 334 SMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWLRITFAADPSSLEEALGRIKSFYLRHSKTQ 408 (409)
T ss_pred EEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 999999986432111223557778889999999999999988899999999999999999999999999887765
No 6
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=100.00 E-value=4.8e-41 Score=287.50 Aligned_cols=244 Identities=60% Similarity=0.969 Sum_probs=190.9
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ +++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..+...+++|+++||
T Consensus 161 ~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~Sf 240 (409)
T PLN00143 161 DAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSI 240 (409)
T ss_pred HHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccc
Confidence 3444444432 889999999999999999999999999999999999999999876545555556666689999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
||.|++||+|+||++++++..+...-+.++.+......+...+.+.|.++..+|.+....++++.++.++++++.+.+.|
T Consensus 241 SK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 320 (409)
T PLN00143 241 SKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKL 320 (409)
T ss_pred hhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999995421111000112333333322334588999999999986456789999999999999999999
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
+++++...+..|+||+|+|++++....++..++.+++..++.++||.+.||..|+.++++|++++.+++++++++++|.+
T Consensus 321 ~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~~~~l~~al~rl~~ 400 (409)
T PLN00143 321 KEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKS 400 (409)
T ss_pred hcCCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence 88765443347899999999987421111124677778888999999999999988999999999989999999999999
Q ss_pred HHHHHhhc
Q 042445 238 FYDRHAEK 245 (246)
Q Consensus 238 ~~~~~~~~ 245 (246)
+++++.++
T Consensus 401 ~l~~~~~~ 408 (409)
T PLN00143 401 FCGRHAKK 408 (409)
T ss_pred HHHHhccC
Confidence 99887653
No 7
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=100.00 E-value=3.4e-40 Score=281.96 Aligned_cols=228 Identities=32% Similarity=0.609 Sum_probs=187.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++..+.++..+.+..++|+++||||.|++||+|+||+
T Consensus 173 ~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~i 252 (401)
T TIGR01264 173 IVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWI 252 (401)
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEE
Confidence 88899999999999999999999999999999999999999987655556656655556999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++...... ++++.+........++|++.|.++..+|.+..+.++++.++.++++++.+.+.|++++++. +..|++
T Consensus 253 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~~ 329 (401)
T TIGR01264 253 IIHDRRGILR--DIRDGLVKLSQRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLR-PVMPSG 329 (401)
T ss_pred EecCcchhHH--HHHHHHHHHhhccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCCe
Confidence 9985211111 3445555443323478999999999999854478999999999999999999999987765 578999
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~ 242 (246)
|+|+|++++...+++..++.+++..+++++||.+.||..|+.++++|++++.+++++++++++|.++++++
T Consensus 330 g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~~~~l~~~l~rl~~~~~~~ 400 (401)
T TIGR01264 330 AMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVPVVMMEEACSRIQEFCERH 400 (401)
T ss_pred eeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 99999998642111222466777777778999999999997789999999988899999999999998754
No 8
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=100.00 E-value=5.7e-40 Score=281.31 Aligned_cols=229 Identities=32% Similarity=0.531 Sum_probs=188.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++..+.++..+....++|+++||||.|++||+|+||+
T Consensus 182 ~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~ 261 (412)
T PTZ00433 182 IMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWL 261 (412)
T ss_pred EEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEE
Confidence 88899999999999999999999999999999999999999987654455555655456899999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
+++++..... ++++.+........++|++.|.++..++.+..+.++++.++.++++++.+.+.|++..++. +..|++
T Consensus 262 i~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~g 338 (412)
T PTZ00433 262 LLVDPHGNGG--DFLDGMKRLGMLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLS-PTMPRG 338 (412)
T ss_pred EEeCCcccHH--HHHHHHHHHhhccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCCe
Confidence 9832111110 5777776654433478999999999999865578999999999999999999998865666 578999
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
|+|+|++++...+.+..++.+++..+++++||.+.||..|+.++++|++++.+++++++++++|.+++++++
T Consensus 339 g~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 339 SMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISRPVEVLREAVERIKAFCERHK 410 (412)
T ss_pred eEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 999999987532111123567777777789999999999988899999999888999999999999998765
No 9
>PRK06855 aminotransferase; Validated
Probab=100.00 E-value=8.2e-40 Score=281.58 Aligned_cols=229 Identities=19% Similarity=0.328 Sum_probs=184.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||.++|.+++++|+++|++||++||+||+|.++.|++..+.++..+.+..++|+++||||.|++||+|+||+
T Consensus 176 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~i 255 (433)
T PRK06855 176 LLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWI 255 (433)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEE
Confidence 78899999999999999999999999999999999999999987655556655544446899999999999999999999
Q ss_pred EeeCCC--CCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445 92 VTSDPN--GILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKK 168 (246)
Q Consensus 92 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 168 (246)
++++.. ..+. .+++.+........+++.+.|.++..++.++. +.++++.++.++++++.+.+.|++++++. +..
T Consensus 256 i~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~-~~~ 332 (433)
T PRK06855 256 EVYNADKDEVFK--KYINSILNAKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLK-VNR 332 (433)
T ss_pred EEeCCchhhHHH--HHHHHHHHhhccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-ccC
Confidence 985310 0000 33344433322333678999999999998654 78999999999999999999998887766 578
Q ss_pred CCCceEEEEEeccccc--------c-------------C-CCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeec-C
Q 042445 169 PEGSMFVMVKLNYSLL--------E-------------G-INSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAV-E 224 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~--------~-------------~-~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~-~ 224 (246)
|+||+|+|++++.... . + ..++.+++..+++++||.+.||..|+. .+++|+|++. +
T Consensus 333 p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~~~ 412 (433)
T PRK06855 333 TNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLERD 412 (433)
T ss_pred CCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECCCc
Confidence 9999999999975310 0 0 013667888889999999999999975 4679999996 9
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 042445 225 PSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 225 ~~~l~~~~~~l~~~~~~~~ 243 (246)
++++++++++|.+++++..
T Consensus 413 ~~~i~~~~~~l~~~~~~~~ 431 (433)
T PRK06855 413 EEKFEWIYQTLAEKIEEYL 431 (433)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998653
No 10
>PRK06207 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.3e-39 Score=278.23 Aligned_cols=218 Identities=20% Similarity=0.300 Sum_probs=184.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..+. ..+++++++||||.|++||+|+||
T Consensus 183 ~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ 262 (405)
T PRK06207 183 LFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGV 262 (405)
T ss_pred EECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEE
Confidence 7999999999999999999999999999999999999999998775554444442 356899999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+...... ..+.+.+.|.++..+++++ ..++++..+.++++++.+.+.|++++++. +..|
T Consensus 263 ii~~~--------~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p 332 (405)
T PRK06207 263 AFGSP--------AIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP-DGWMKDRIARHQAIRDDLLRVLRGVEGVF-VRAP 332 (405)
T ss_pred EEcCH--------HHHHHHHHHHhHhccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecCC
Confidence 99988 899999877543 3367888999999999852 45677778888899999999998877776 5678
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
++|+|+|++++... .++.++...++.++||.+.||..|+. ++++|++++.+++++++++++|.+++++++
T Consensus 333 ~gg~fl~~~l~~~~----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 333 QAGSYLFPRLPRLA----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQDHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred CeeEEEEEeCcccC----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999987421 13566766666689999999998865 789999999989999999999999998765
No 11
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=100.00 E-value=2.1e-39 Score=277.11 Aligned_cols=238 Identities=45% Similarity=0.803 Sum_probs=193.3
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS 78 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 78 (246)
.+++.+.++ ++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++..+.++..+....++|+++|||
T Consensus 161 ~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~S 240 (403)
T TIGR01265 161 GLEALADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGIS 240 (403)
T ss_pred HHHHHhCcCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecc
Confidence 444444443 8899999999999999999999999999999999999999998875556666666666899999999
Q ss_pred cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445 79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK 158 (246)
Q Consensus 79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 158 (246)
|.|++||+|+||++++++...+. .++++.+........++|.+.|.++..++.+..+.++++.++.++++++.+.+.|+
T Consensus 241 K~~~~pGlRiG~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 319 (403)
T TIGR01265 241 KRWVVPGWRLGWIIIHDPHGIFR-DTVLQGLKNLLQRILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELK 319 (403)
T ss_pred cccCCCcceEEEEEEeCchhhhH-HHHHHHHHHHhhhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999964211110 02455555554333478999999999999865578999999999999999999999
Q ss_pred cCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHH
Q 042445 159 EIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238 (246)
Q Consensus 159 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~ 238 (246)
.++++. +..|++|+|+|++++.....+..++.+++..+++++||.+.||..|+.++++|++++.+++++++++++|.++
T Consensus 320 ~~~~~~-~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~~~~~~l~~~l~~l~~~ 398 (403)
T TIGR01265 320 DIPGLV-CPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRITITVPESMLEEACSRIKEF 398 (403)
T ss_pred cCCCce-ecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 887775 5689999999999875321111246677777788999999999999889999999998888999999999999
Q ss_pred HHHH
Q 042445 239 YDRH 242 (246)
Q Consensus 239 ~~~~ 242 (246)
++++
T Consensus 399 ~~~~ 402 (403)
T TIGR01265 399 CERH 402 (403)
T ss_pred HHhc
Confidence 8765
No 12
>PLN00175 aminotransferase family protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=275.29 Aligned_cols=223 Identities=22% Similarity=0.332 Sum_probs=187.7
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEccc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSI 77 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~ 77 (246)
.+++.+.++ ++++||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+.. .+++|+++||
T Consensus 179 ~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i~Sf 257 (413)
T PLN00175 179 ELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYERTVTMNSL 257 (413)
T ss_pred HHHHhcCcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcCcEEEEecc
Confidence 445444433 8899999999999999999999999999999999999999998753 335544443 5689999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
||.|++||+|+||+++++ ++++.+..... ...++|++.|.++..+|+.+ +.++++.++.++++++.+.+.
T Consensus 258 SK~~~~~G~RiG~~v~~~--------~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~ 328 (413)
T PLN00175 258 GKTFSLTGWKIGWAIAPP--------HLTWGVRQAHSFLTFATATPMQWAAVAALRAP-ESYYEELKRDYSAKKDILVEG 328 (413)
T ss_pred hhhccCcchheeeeEeCH--------HHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 89998887754 34588999999999999853 678999999999999999999
Q ss_pred hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----CCeEEEEeecChHHHHHH
Q 042445 157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITFAVEPSALENG 231 (246)
Q Consensus 157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~iRls~~~~~~~l~~~ 231 (246)
|++. ++. +..|+||+|+|++++.. +..++.+++..+++++||.+.||..|+. ++++||+++.++++++++
T Consensus 329 L~~~-g~~-~~~p~g~~f~~~~~~~~---~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~ 403 (413)
T PLN00175 329 LKEV-GFK-VYPSSGTYFVMVDHTPF---GFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAA 403 (413)
T ss_pred HHHC-CCe-ecCCCeeEEEEEecccc---CCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHH
Confidence 9987 666 56899999999987532 1113677888888889999999998852 579999999999999999
Q ss_pred HHHHHHHHH
Q 042445 232 LGRMKAFYD 240 (246)
Q Consensus 232 ~~~l~~~~~ 240 (246)
+++|.++++
T Consensus 404 ~~rL~~~~~ 412 (413)
T PLN00175 404 VERMKTKLK 412 (413)
T ss_pred HHHHHHHHh
Confidence 999999875
No 13
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=100.00 E-value=4.7e-39 Score=276.77 Aligned_cols=222 Identities=20% Similarity=0.313 Sum_probs=183.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc----C--C-cccEEEEcccccccccC
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF----G--S-IVPLLTLGSISKRGIVP 84 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~----~--~-~~~~i~~~s~sK~~~~~ 84 (246)
+++|||||||.++|.+++++|+++|+++|+++|+||+|..+.|++.++.++..+ + . .+++++++||||.||++
T Consensus 205 ll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~ 284 (447)
T PLN02607 205 LITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLP 284 (447)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCC
Confidence 889999999999999999999999999999999999999998886556665432 1 1 46899999999999999
Q ss_pred CceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445 85 GLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKEIPC 162 (246)
Q Consensus 85 g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~ 162 (246)
|+|+||+++.+. +++..++....++ .+|.+.|.++..+|++.. +.++...+++++++++.+.+.|++. +
T Consensus 285 GlRvG~ivs~n~-------~l~~~~~~~~~~~-~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-g 355 (447)
T PLN02607 285 GFRVGTIYSYND-------KVVTTARRMSSFT-LVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-G 355 (447)
T ss_pred cceEEEEEEcCH-------HHHHHHHHHhhcC-CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 999999999552 6667666554333 679999999999999754 4788999999999999999999987 6
Q ss_pred CccccCCCCceEEEEEeccccccC-CCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHHHH
Q 042445 163 ITCPKKPEGSMFVMVKLNYSLLEG-INSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMKAF 238 (246)
Q Consensus 163 ~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~~~ 238 (246)
+. +..|++|+|+|++++...-.. ...+.+++.++++++||.+.||..|+. ++|+|++|+. +++.+++++++|.++
T Consensus 356 i~-~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~ 434 (447)
T PLN02607 356 IE-CLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRF 434 (447)
T ss_pred CC-cccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Confidence 76 678999999999986421000 011335556777788999999999876 7999999996 899999999999999
Q ss_pred HHHHh
Q 042445 239 YDRHA 243 (246)
Q Consensus 239 ~~~~~ 243 (246)
+++.+
T Consensus 435 l~~~~ 439 (447)
T PLN02607 435 MDRRK 439 (447)
T ss_pred HHHHH
Confidence 98766
No 14
>PRK08636 aspartate aminotransferase; Provisional
Probab=100.00 E-value=8.2e-39 Score=273.50 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=185.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.|++||+|+||
T Consensus 180 ~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~ 259 (403)
T PRK08636 180 VVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGF 259 (403)
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeee
Confidence 88999999999999999999999999999999999999999987655556666644 35678899999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+...... ..+++.+.|.++..+++. .+.++++.++.++++++.+.+.|++. ++. +..|
T Consensus 260 iv~~~--------~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~p 328 (403)
T PRK08636 260 VVGNK--------KLVGALKKIKSWLDYGMFTPIQVAATIALDG-DQSCVEEIRETYRKRRDVLIESFANA-GWE-LQKP 328 (403)
T ss_pred eeCCH--------HHHHHHHHHHHHhcccCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCC
Confidence 99988 999988877543 346778888888877753 46789999999999999999999987 565 5789
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
++|+|+|++++... .+ .++.+++..+++++||.+.||..|+. ++++|++++.+++++++++++|.++++.++
T Consensus 329 ~~g~~~~~~l~~~~-~~-~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~~~rl~~~l~~~~ 402 (403)
T PRK08636 329 RASMFVWAKIPEPA-RH-LGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAARNIKKFLKELE 402 (403)
T ss_pred CcceEEEEECCCcc-CC-CCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999987531 01 13567777778889999999999876 689999999889999999999999997753
No 15
>PRK05957 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.6e-38 Score=270.56 Aligned_cols=229 Identities=21% Similarity=0.313 Sum_probs=190.3
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s 76 (246)
|.+++.++++ ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++....+...+ +...++|+++|
T Consensus 151 ~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 230 (389)
T PRK05957 151 EAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYS 230 (389)
T ss_pred HHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEec
Confidence 4555555543 888999999999999999999999999999999999999999875443333333 44568999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
|||.|+++|+|+||+++++ ++++++...... ..+++.+.|.++..++++ ...++++.++.++++++.+.+
T Consensus 231 ~SK~~g~~GlRiG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~l~~ 301 (389)
T PRK05957 231 LSKAYGFASWRIGYMVIPI--------HLLEAIKKIQDTILICPPVVSQYAALGALQV-GKSYCQQHLPEIAQVRQILLK 301 (389)
T ss_pred chhhccCccceeEEEecCH--------HHHHHHHHHHhhcccCCCcHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 999999877543 346788999999999974 246788888889999999999
Q ss_pred HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHH
Q 042445 156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGL 232 (246)
Q Consensus 156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~ 232 (246)
.|++++++..+..|+||+|+|++++... ++.+++..+++++||.+.||..|+. ++++|++++. +++++++++
T Consensus 302 ~L~~~~~~~~~~~~~gg~~~~~~~~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~ 376 (389)
T PRK05957 302 SLGQLQDRCTLHPANGAFYCFLKVNTDL-----NDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGI 376 (389)
T ss_pred HHHhcCCCccccCCCeeEEEEEeCCCCC-----ChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHH
Confidence 9998876533568899999999986432 4677878777789999999999876 5799999985 899999999
Q ss_pred HHHHHHHHHHhh
Q 042445 233 GRMKAFYDRHAE 244 (246)
Q Consensus 233 ~~l~~~~~~~~~ 244 (246)
++|.++++++.+
T Consensus 377 ~~l~~~~~~~~~ 388 (389)
T PRK05957 377 ERLVQGLKTIVQ 388 (389)
T ss_pred HHHHHHHHhhhc
Confidence 999999988654
No 16
>PRK06107 aspartate aminotransferase; Provisional
Probab=100.00 E-value=9.6e-39 Score=272.97 Aligned_cols=230 Identities=20% Similarity=0.353 Sum_probs=192.9
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc-CCEEEEccccCCcccCCCCCccccccCC--cccEEEEc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL-GIMVIANEVYGHLAFGNTPFVSMGVFGS--IVPLLTLG 75 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~ 75 (246)
.+++.+.++ ++++||||||.++|.+++++|+++|+++ ++++|+||+|.++.+++.++.++..+.+ .+++++++
T Consensus 158 ~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~ 237 (402)
T PRK06107 158 ALEAAITPRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTN 237 (402)
T ss_pred HHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEe
Confidence 444444433 7889999999999999999999999998 9999999999999887655555555433 36899999
Q ss_pred ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445 76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC 154 (246)
Q Consensus 76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (246)
||||.|++||+|+||+++++ ++++.+...... ..+++.+.|+++..+|++ .+.++++.++.++++++.+.
T Consensus 238 S~SK~~~~pGlRiG~~~~~~--------~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 308 (402)
T PRK06107 238 GVSKTYAMTGWRIGYAAGPA--------DLIAAINKLQSQSSSCPSSISQAAAAAALNG-DQSFVTESVAVYKQRRDYAL 308 (402)
T ss_pred ccchhhcCcccceeeeecCH--------HHHHHHHHHHHhcccCCChHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 999998887553 447899999999999975 36789999999999999999
Q ss_pred HHhhcCCCCccccCCCCceEEEEEeccc---ccc-C--CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHH
Q 042445 155 DRLKEIPCITCPKKPEGSMFVMVKLNYS---LLE-G--INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSAL 228 (246)
Q Consensus 155 ~~L~~~~~~~~~~~~~~g~~~~~~~~~~---~~~-~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l 228 (246)
+.|++++++. +..|+||+|+|++++.. ..+ + ..++.+++..+++++||.+.||..|+..+++|++++.+++++
T Consensus 309 ~~L~~~~g~~-~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~~~e~l 387 (402)
T PRK06107 309 ALLNAIPGLS-CLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIATSLETL 387 (402)
T ss_pred HHHhcCCCCc-ccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCCCHHHH
Confidence 9999887776 57899999999987421 000 1 114567788888999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 042445 229 ENGLGRMKAFYDRH 242 (246)
Q Consensus 229 ~~~~~~l~~~~~~~ 242 (246)
++++++|.+++++.
T Consensus 388 ~~~l~~l~~~l~~~ 401 (402)
T PRK06107 388 EEACARIERAVAAL 401 (402)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 17
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=100.00 E-value=1e-38 Score=280.27 Aligned_cols=237 Identities=19% Similarity=0.384 Sum_probs=185.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.++..++++ +++|||||||.+++.+++++|+++|++||++||+||+|.++.+++..+.++..+.+...+++++||
T Consensus 272 ~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~ 351 (517)
T PRK13355 272 DDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGL 351 (517)
T ss_pred HHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecc
Confidence 3455555543 899999999999999999999999999999999999999999987556666666554457889999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~ 155 (246)
||.|+++|+|+||++++....+.. ++++.+........++|.++|.++..+|.... ..++.+.++. .++++.+.+
T Consensus 352 SK~~~~~G~RiG~~i~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~-~~~r~~l~~ 428 (517)
T PRK13355 352 SKSHMIAGYRIGWMILSGNKRIAK--DYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRV-YEQRELVYN 428 (517)
T ss_pred hhhccCcccceEEEEeeCchhhHH--HHHHHHHHHhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999763211110 23444443333334788999999999997432 4566665444 556899999
Q ss_pred HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHH
Q 042445 156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLG 233 (246)
Q Consensus 156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~ 233 (246)
.|++++|+. +..|+|+||+|++++.... +..++.+++..+|.++||.|.||..|+. ++++|++++.++++++++++
T Consensus 429 ~L~~~~g~~-~~~p~g~fy~~~~l~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~~~~~~l~~a~~ 506 (517)
T PRK13355 429 ALNAIPGIS-AVKPKAAFYIFPKIDVKKF-NIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYLPRLEDLEDAMD 506 (517)
T ss_pred HHhcCCCcc-cCCCCeeeEEEeecCcccC-CCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeCCCHHHHHHHHH
Confidence 999888887 6889999999998874321 1124677888999999999999999974 78999999889999999999
Q ss_pred HHHHHHHHHh
Q 042445 234 RMKAFYDRHA 243 (246)
Q Consensus 234 ~l~~~~~~~~ 243 (246)
+|.++++.++
T Consensus 507 rl~~~~~~~~ 516 (517)
T PRK13355 507 RLADFFSYYR 516 (517)
T ss_pred HHHHHHHHhh
Confidence 9999998654
No 18
>PRK07681 aspartate aminotransferase; Provisional
Probab=100.00 E-value=1.2e-38 Score=272.27 Aligned_cols=210 Identities=23% Similarity=0.334 Sum_probs=181.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.|++||+|+||
T Consensus 171 ~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~ 250 (399)
T PRK07681 171 ILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGY 250 (399)
T ss_pred EEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEE
Confidence 88899999999999999999999999999999999999999987655545544443 46899999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+..... ...++|.+.|.++..++.++ ..++++.++.++++++.+.+.|++. ++. +..|
T Consensus 251 ~i~~~--------~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~p 319 (399)
T PRK07681 251 MIGNE--------EIVRALTQFKSNTDYGVFLPIQKAACAALRNG-AAFCEKNRGIYQERRDTLVDGFRTF-GWN-VDKP 319 (399)
T ss_pred EecCH--------HHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCC
Confidence 99988 89998887654 34478999999999999863 4788999999999999999999987 665 5678
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
++|+|+|++++... ++.+++..+++++||.+.||..|+. ++++|++++.+++++++++++|.+
T Consensus 320 ~~g~f~~~~l~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 320 AGSMFVWAEIPKGW-----TSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred CeeeEEEEECCCCC-----CHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 99999999987532 4667777777779999999998875 579999999888999999999987
No 19
>PRK09148 aminotransferase; Validated
Probab=100.00 E-value=1.8e-38 Score=271.32 Aligned_cols=221 Identities=18% Similarity=0.269 Sum_probs=187.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++++++||||.|++||+|+||
T Consensus 170 ~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~ 249 (405)
T PRK09148 170 IVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGF 249 (405)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheee
Confidence 89999999999999999999999999999999999999999887655555544433 45688999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+...... ..+++.+.|.++..+|.+ .+.++++.++.++++++.+.+.|+++ ++. +..|
T Consensus 250 ~v~~~--------~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~-~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p 318 (405)
T PRK09148 250 AVGNE--------RLIAALTRVKSYLDYGAFTPIQVAATAALNG-PQDCIAEMRELYKKRRDVLVESFGRA-GWD-IPPP 318 (405)
T ss_pred eeCCH--------HHHHHHHHHHHHhccCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-cCCC
Confidence 99988 899988877543 347789999999999974 36789999999999999999999987 565 5678
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHhhc
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~~ 245 (246)
++|+|+|++++... .+ .++.+++..+++++||.+.||..|+. ++++|++++.+++++++++++|.+++.++.++
T Consensus 319 ~~g~f~~~~l~~~~-~~-~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~~~~~~l~~al~~l~~~l~~~~~~ 394 (405)
T PRK09148 319 AASMFAWAPIPEAF-RH-LGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALVENEQRIRQAARNIKRFLSSADET 394 (405)
T ss_pred CeeEEEEEECCCcc-CC-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987431 00 13467777777889999999999875 58999999988999999999999999888765
No 20
>PRK07324 transaminase; Validated
Probab=100.00 E-value=2e-38 Score=268.40 Aligned_cols=222 Identities=21% Similarity=0.363 Sum_probs=189.2
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS 78 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 78 (246)
.+++.++++ ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. +.++.. ..+++|+++|||
T Consensus 145 ~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~~--~~~~~I~~~s~S 221 (373)
T PRK07324 145 ELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIAD--LYEKGISTNSMS 221 (373)
T ss_pred HHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChhh--ccCCEEEEecch
Confidence 444444443 8899999999999999999999999999999999999999988653 333322 245789999999
Q ss_pred cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
|.|+++|+|+||+++++ ++++.++..... +.+++.++|.++..+++. .+.++++.++.++++++.+.+.|
T Consensus 222 K~~~~~G~RiG~i~~~~--------~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~-~~~~l~~~~~~~~~~~~~l~~~l 292 (373)
T PRK07324 222 KTYSLPGIRVGWIAANE--------EVIDILRKYRDYTMICAGVFDDMLASLALEH-RDAILERNRKIVRTNLAILDEWV 292 (373)
T ss_pred hhcCCccceeEEEecCH--------HHHHHHHHHhCcEEecCChHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 999999887653 347889999999988873 46789999999999999999999
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
++.+++. +..|++|+|+|+.++... ++.+++.++++++||.+.||..|+.++++|+|++.+++.+++++++|.+
T Consensus 293 ~~~~~~~-~~~p~gg~~~~i~~~~~~-----~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~~~~~l~~~l~rl~~ 366 (373)
T PRK07324 293 AKEPRVS-YVKPKAVSTSFVKLDVDM-----PSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCCDTETLKKGLKKLSE 366 (373)
T ss_pred hcCCCce-EECCCceEEEEEEeCCCC-----CHHHHHHHHHHhcCEEEECccccCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 9877776 578999999999887532 4778888888899999999999988899999999999999999999999
Q ss_pred HHHHH
Q 042445 238 FYDRH 242 (246)
Q Consensus 238 ~~~~~ 242 (246)
+++++
T Consensus 367 ~l~~~ 371 (373)
T PRK07324 367 FLREF 371 (373)
T ss_pred HHHhc
Confidence 99764
No 21
>PRK06348 aspartate aminotransferase; Provisional
Probab=100.00 E-value=2e-38 Score=269.56 Aligned_cols=222 Identities=26% Similarity=0.443 Sum_probs=185.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s 76 (246)
|.+++.++++ ++++||||||.++|.+++++|+++|+++|++||+||+|.++.+++. +.++..+.. .+++|+++|
T Consensus 153 ~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~S 231 (384)
T PRK06348 153 KKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPERTITFGS 231 (384)
T ss_pred HHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC-ccchhhcCCCcCcEEEEec
Confidence 3445544433 7789999999999999999999999999999999999999988753 334444432 568999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
|||.|++||+|+||+++++ ++++.+..... ...+++++.|.++..++.. .+.++++.++.++++++.+.+
T Consensus 232 fSK~~~l~GlRiG~~v~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~ 302 (384)
T PRK06348 232 FSKDFAMTGWRIGYVIAPD--------YIIETAKIINEGICFSAPTISQRAAIYALKH-RDTIVPLIKEEFQKRLEYAYK 302 (384)
T ss_pred chhccCCccccceeeecCH--------HHHHHHHHHHHhccCCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 88888887654 2347899999999999974 477889999999999999999
Q ss_pred HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHH
Q 042445 156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLG 233 (246)
Q Consensus 156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~ 233 (246)
.|++++++. +..|+||+|+|++++.... ++.+++..+++++||.+.||..|+. .+++|++++.++++++++++
T Consensus 303 ~L~~~~~~~-~~~p~gg~~~~~~~~~~~~----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~ 377 (384)
T PRK06348 303 RIESIPNLS-LHPPKGSIYAFINIKKTGL----SSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACTVGIEVLEEAFN 377 (384)
T ss_pred HHhcCCCce-eccCCeeEEEEEecccCCC----CHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEecCCHHHHHHHHH
Confidence 999887765 5688999999999874211 4667777777789999999999976 68999999988999999999
Q ss_pred HHHHH
Q 042445 234 RMKAF 238 (246)
Q Consensus 234 ~l~~~ 238 (246)
+|.++
T Consensus 378 ~l~~~ 382 (384)
T PRK06348 378 RIEKM 382 (384)
T ss_pred HHHhh
Confidence 99764
No 22
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=100.00 E-value=2.8e-38 Score=273.75 Aligned_cols=222 Identities=19% Similarity=0.286 Sum_probs=181.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc---------CCcccEEEEcccccccc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF---------GSIVPLLTLGSISKRGI 82 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~---------~~~~~~i~~~s~sK~~~ 82 (246)
+++|||||||.++|.+++++|+++|+++|++||+||+|.++.|++.++.+.... +..+++++++||||.|+
T Consensus 196 ~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~ 275 (468)
T PLN02450 196 LITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLG 275 (468)
T ss_pred EEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCC
Confidence 888999999999999999999999999999999999999998876444443211 23568999999999999
Q ss_pred cCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcC
Q 042445 83 VPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKEI 160 (246)
Q Consensus 83 ~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~ 160 (246)
+||+|+||+++++. .+++.+...... ..+|.+.|.++..+|+++. +.++++.++.++++++.+.+.|+++
T Consensus 276 l~GlRiG~li~~~~-------~l~~~~~~~~~~-~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~ 347 (468)
T PLN02450 276 LPGFRVGAIYSNDE-------MVVSAATKMSSF-GLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA 347 (468)
T ss_pred CCCccEEEEEECCH-------HHHHHHHHHhhc-CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999872 345655554433 3679999999999998753 3588999999999999999999988
Q ss_pred CCCccccCCCCceEEEEEeccccc-cCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHH
Q 042445 161 PCITCPKKPEGSMFVMVKLNYSLL-EGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMK 236 (246)
Q Consensus 161 ~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~ 236 (246)
|+. +..|++|+|+|++++...- ....+..+++..+++++||.+.||..|+. ++|+|++++. +++++++++++|+
T Consensus 348 -gi~-~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~~~~~~l~~~l~ri~ 425 (468)
T PLN02450 348 -GIK-CLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDLAMKRLK 425 (468)
T ss_pred -CCc-ccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecCCCHHHHHHHHHHHH
Confidence 676 5789999999999864210 01112345677778889999999998875 7899999995 8999999999999
Q ss_pred HHHHHHh
Q 042445 237 AFYDRHA 243 (246)
Q Consensus 237 ~~~~~~~ 243 (246)
+++.+..
T Consensus 426 ~~l~~~~ 432 (468)
T PLN02450 426 SFVESDS 432 (468)
T ss_pred HHHHhcc
Confidence 9987644
No 23
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=100.00 E-value=4.5e-38 Score=273.53 Aligned_cols=222 Identities=18% Similarity=0.284 Sum_probs=181.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC--------cccEEEEccccccccc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS--------IVPLLTLGSISKRGIV 83 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--------~~~~i~~~s~sK~~~~ 83 (246)
+++|||||||.++|.+++++|+++|+++|++||+||+|.++.|++..+.++..+.. .+++++++||||.|++
T Consensus 204 ~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~gl 283 (496)
T PLN02376 204 ILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGL 283 (496)
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCC
Confidence 88999999999999999999999999999999999999999988765666544411 1357889999999999
Q ss_pred CCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445 84 PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKEIP 161 (246)
Q Consensus 84 ~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~ 161 (246)
||+|+||++++++ .+.+.++....++ .+|.+.|.++..+|+++. +.++.+.++.++++++.+.+.|++.
T Consensus 284 pGlRvG~li~~~~-------~l~~~~~~~~~~~-~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~- 354 (496)
T PLN02376 284 PGFRVGIVYSFND-------SVVSCARKMSSFG-LVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA- 354 (496)
T ss_pred CcceEEEEEECCH-------HHHHHHHHHhhcC-CCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 9999999999762 5555555544444 689999999999998654 5778888999999999999999986
Q ss_pred CCccccCCCCceEEEEEeccccc--cCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHH
Q 042445 162 CITCPKKPEGSMFVMVKLNYSLL--EGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMK 236 (246)
Q Consensus 162 ~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~ 236 (246)
++. +..|++|+|+|++++...- ....++.+++..++.+.||.+.||..|+. ++|+|++|+. +++.+++++++|.
T Consensus 355 gi~-~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~ 433 (496)
T PLN02376 355 DIA-CLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQ 433 (496)
T ss_pred CCc-ccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHH
Confidence 666 5678999999999864210 00112356667777778999999999975 7899999995 8899999999999
Q ss_pred HHHHHHh
Q 042445 237 AFYDRHA 243 (246)
Q Consensus 237 ~~~~~~~ 243 (246)
+++.+.+
T Consensus 434 ~~l~~~~ 440 (496)
T PLN02376 434 DFVSKNK 440 (496)
T ss_pred HHHHHhh
Confidence 9997654
No 24
>PRK07682 hypothetical protein; Validated
Probab=100.00 E-value=2e-38 Score=269.17 Aligned_cols=224 Identities=22% Similarity=0.310 Sum_probs=186.5
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEccc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSI 77 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~ 77 (246)
.+++.+.++ ++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++. +.++..+.. .+++++++||
T Consensus 146 ~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~ 224 (378)
T PRK07682 146 QIEAAITAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGF 224 (378)
T ss_pred HHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecC
Confidence 444444433 7889999999999999999999999999999999999999998763 334333332 4689999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
||.|++||+|+||+++++ ++++.+...... ..+++++.|.++..+|+++ +.++++.++.++++++.+.+.
T Consensus 225 SK~~~~~GlR~G~~~~~~--------~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~ 295 (378)
T PRK07682 225 SKGFAMTGWRLGFIAAPV--------YFSEAMLKIHQYSMMCAPTMAQFAALEALRAG-NDDVIRMRDSYRKRRNFFVTS 295 (378)
T ss_pred cccccChhhhhhhhhcCH--------HHHHHHHHHHHhhccCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 999988876443 3468899999999999853 456889999999999999999
Q ss_pred hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHH
Q 042445 157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGR 234 (246)
Q Consensus 157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~ 234 (246)
|+++ ++. +..|+||+|+|+.++... .++.++...+++++||.+.||..|+. ++++|+|++.+++++++++++
T Consensus 296 L~~~-~~~-~~~p~g~~~~~~~~~~~~----~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~ 369 (378)
T PRK07682 296 FNEI-GLT-CHVPGGAFYAFPSISSTG----LSSEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYATSLEQLQEAMKR 369 (378)
T ss_pred HHHC-CCc-cCCCCeeEEEEEeccCCC----CCHHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCCCHHHHHHHHHH
Confidence 9987 666 578999999999885321 14667777777789999999998875 689999999988999999999
Q ss_pred HHHHHHHH
Q 042445 235 MKAFYDRH 242 (246)
Q Consensus 235 l~~~~~~~ 242 (246)
|+++++++
T Consensus 370 l~~~l~~~ 377 (378)
T PRK07682 370 MKRFVENK 377 (378)
T ss_pred HHHHHhhc
Confidence 99998764
No 25
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-38 Score=252.46 Aligned_cols=228 Identities=22% Similarity=0.322 Sum_probs=199.8
Q ss_pred hhhhhhhccc-----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCc--ccEEEE
Q 042445 2 ELINQDITRE-----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSI--VPLLTL 74 (246)
Q Consensus 2 e~~~~~~~~~-----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~i~~ 74 (246)
+.+++.+... ++||||||||.+++.+++++|.++|.+||+.||+||+|+++.+.|..+.+...+.+. ++.+++
T Consensus 148 ~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~ 227 (388)
T COG1168 148 DALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITL 227 (388)
T ss_pred HHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEE
Confidence 4566665543 999999999999999999999999999999999999999999999777777777653 789999
Q ss_pred cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh--hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445 75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL--NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK 152 (246)
Q Consensus 75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (246)
.|.||.|+.+|+++++++.++. ++.++..+.. ....++|.++..|..++.+. .+.|++++.+.++.|++.
T Consensus 228 ~saSKtFNlaGL~~a~~Ii~n~-------~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~-G~~WLd~L~~yl~~N~~~ 299 (388)
T COG1168 228 TSASKTFNLAGLKCAYIIISNR-------ELRAKFLKRLKRNGLHGPSALGIIATEAAYNQ-GEPWLDELLEYLKDNRDY 299 (388)
T ss_pred eeccccccchhhhheeEEecCH-------HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-chHHHHHHHHHHHHHHHH
Confidence 9999999999999999999984 5555554442 23338899999999999996 589999999999999999
Q ss_pred HHHHhhc-CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHH
Q 042445 153 CCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALE 229 (246)
Q Consensus 153 l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~ 229 (246)
+.+.+.+ +|++. +..|+|.+.+|+++....+ ++.+....++.+.+|.+.+|..|+. ++++|++++.+...++
T Consensus 300 ~~~~l~~~~P~v~-v~~p~gTYL~WLD~r~l~l----~d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~acpr~~L~ 374 (388)
T COG1168 300 VADFLNKHLPGVK-VTEPQGTYLAWLDCRELGL----DDSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFACPRAILE 374 (388)
T ss_pred HHHHHHhhCCCcE-EecCCCceeeeeeccccCC----ChHHHHHHHHHhhcEeccCCCccCcCCCceEEEecCCCHHHHH
Confidence 9999987 89999 7899999999999987643 4567778889999999999999997 7999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 042445 230 NGLGRMKAFYDRH 242 (246)
Q Consensus 230 ~~~~~l~~~~~~~ 242 (246)
+++++|.+++++.
T Consensus 375 eal~ri~~al~~~ 387 (388)
T COG1168 375 EALERLKRALKKR 387 (388)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998753
No 26
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=100.00 E-value=3e-38 Score=268.91 Aligned_cols=213 Identities=18% Similarity=0.288 Sum_probs=173.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCC-CccccccCCc-ccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTP-FVSMGVFGSI-VPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~-~~~i~~~s~sK~~~~~g~r~G 89 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++.. ..++..++.. +++|+++||||.||+||+|+|
T Consensus 170 ~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG 249 (388)
T PRK07366 170 VLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIG 249 (388)
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhhe
Confidence 88999999999999999999999999999999999999999987643 4445555443 468999999999999999999
Q ss_pred EEEeeCCCCCcchhhHHHHHHHHhhhc-CCC-CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIFLNIS-SDP-ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
|+++++ ++++.+......+ .+. +.+.+.+ ...+.. .+.++++.++.++++++.+.+.|+++ ++. +.
T Consensus 250 ~~v~~~--------~li~~l~~~~~~~~~~~~~~~~~~a-~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~-~~ 317 (388)
T PRK07366 250 FAIGNA--------QLIQALRQVKAVVDFNQYRGILNGA-IAALTG-PQATVQQTVQIFRQRRDAFINALHQI-GWP-VP 317 (388)
T ss_pred ehcCCH--------HHHHHHHHHHhhcccCCCHHHHHHH-HHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-cc
Confidence 999988 8999988775532 233 2334444 444432 46889999999999999999999987 565 56
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
.|++|+|+|++++... ..++.+++..+++++||.+.||..|+. ++|+|++++.+++++++++++|.+++
T Consensus 318 ~p~~g~f~~~~~~~~~---~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 318 LPEATMYVWAKLPEPW---QGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred CCCeeEEEEEECCccc---CCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 7999999999987531 012566667777889999999999875 58999999988999999999998763
No 27
>PTZ00377 alanine aminotransferase; Provisional
Probab=100.00 E-value=6.3e-38 Score=273.18 Aligned_cols=225 Identities=20% Similarity=0.282 Sum_probs=179.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCcccc----ccCCc----ccEEEEcccccc-c
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMG----VFGSI----VPLLTLGSISKR-G 81 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~----~~~~~----~~~i~~~s~sK~-~ 81 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.|++ .++.++. .+.+. .++|+++||||. +
T Consensus 223 ~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~ 302 (481)
T PTZ00377 223 VVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGII 302 (481)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccc
Confidence 788999999999999999999999999999999999999999853 3444432 22221 368999999997 6
Q ss_pred ccCCceEEEEEe---eCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhc---h---H---HHHHHHHHHHHHH
Q 042445 82 IVPGLRLGWLVT---SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKT---E---E---EFFSKIIDILRET 149 (246)
Q Consensus 82 ~~~g~r~G~i~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~---~---~---~~~~~~~~~~~~~ 149 (246)
++||+|+||+++ ++ ++++.+........++|++.|.++..+++.. . + .++.+.++.++++
T Consensus 303 ~~~GlRiG~~~~~~~p~--------~li~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r 374 (481)
T PTZ00377 303 GECGRRGGYFELTNIPP--------EVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRR 374 (481)
T ss_pred cCCcCceEEEEEeCCCH--------HHHHHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 899999999997 55 8888888775444478999999999999631 1 2 3344445568999
Q ss_pred HHHHHHHhhcCCCCccccCCCCceEEEEEecccc-c------cCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEE
Q 042445 150 ADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-L------EGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRI 219 (246)
Q Consensus 150 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-~------~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRl 219 (246)
++.+.+.|++++++. +..|+||+|+|++++... . .+..++..++..+++++||.+.||+.|+. ++++|+
T Consensus 375 r~~l~~~L~~~~g~~-~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rl 453 (481)
T PTZ00377 375 AELLTDELNKIEGVS-CQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRI 453 (481)
T ss_pred HHHHHHHHhcCCCcE-eecCCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEE
Confidence 999999999988877 578999999998775210 0 01112455678889999999999999974 469999
Q ss_pred EeecChHHHHHHHHHHHHHHHHHhhc
Q 042445 220 TFAVEPSALENGLGRMKAFYDRHAEK 245 (246)
Q Consensus 220 s~~~~~~~l~~~~~~l~~~~~~~~~~ 245 (246)
|++.+++++++++++|.++++++.++
T Consensus 454 s~~~~~e~l~~~l~rl~~~~~~~~~~ 479 (481)
T PTZ00377 454 TILPPEEQIEEMVKKIKEFHESFMKK 479 (481)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99988889999999999999887653
No 28
>PRK08960 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=265.39 Aligned_cols=213 Identities=18% Similarity=0.250 Sum_probs=180.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ..++... .+++++++||||.||++|+|+||+
T Consensus 170 ~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~~~~--~~~vi~~~S~SK~~g~~GlRiG~~ 246 (387)
T PRK08960 170 LVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASVLEV--DDDAFVLNSFSKYFGMTGWRLGWL 246 (387)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCChhhc--cCCEEEEeecccccCCcccEEEEE
Confidence 8889999999999999999999999999999999999999988653 2233333 358999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE 170 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 170 (246)
++++ ++++.+..... ...++|.+.|.++..++.+..+.++++.++.++++++.+.+.|+++ ++..+..|+
T Consensus 247 ~~~~--------~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~ 317 (387)
T PRK08960 247 VAPP--------AAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL-GFGIAVEPQ 317 (387)
T ss_pred EcCH--------HHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCC
Confidence 9998 88988877644 3447799999999999975446899999999999999999999987 554345789
Q ss_pred CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
||+|+|++++... .++.+++..+++++||.+.||..|+. ++++|++++.+.+.+++++++|.++++
T Consensus 318 g~~f~~~~~~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 318 GAFYLYADISAFG----GDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred eeEEEEEeccccC----CCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 9999999987521 13667777778889999999999975 479999999988999999999998774
No 29
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=100.00 E-value=6.9e-38 Score=266.31 Aligned_cols=210 Identities=24% Similarity=0.352 Sum_probs=179.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++....++..++. .+++|+++||||.||++|+|+||
T Consensus 169 ~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~ 248 (383)
T TIGR03540 169 FINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGM 248 (383)
T ss_pred EEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeE
Confidence 88899999999999999999999999999999999999999887644555555543 45789999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+..... ...+++.+.|.++..++.+. +.++++.++.++++++.+.+.|++. ++. +..|
T Consensus 249 ~i~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~~ 317 (383)
T TIGR03540 249 AVGNA--------DLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP-QDVVKEIRKIYQRRRDLLLEALKKI-GID-VEKP 317 (383)
T ss_pred EeCCH--------HHHHHHHHHHHhcccCCChHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhC-CCE-ecCC
Confidence 99988 89988877644 33467889999999999853 7889999999999999999999987 666 5678
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
++|+|+|++++... ++.+++..+++++||.+.||..|+. ++++||+++.+++.+++++++|.+
T Consensus 318 ~~~~~~~~~l~~~~-----~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 318 KATFYVWVPVPEGY-----TSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred CcceEEEEECCCCC-----CHHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 89999999987432 4677777777889999999999875 579999999888899999988864
No 30
>PRK08068 transaminase; Reviewed
Probab=100.00 E-value=7.8e-38 Score=266.42 Aligned_cols=211 Identities=19% Similarity=0.292 Sum_probs=175.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccc-cccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSM-GVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++ ...+..+++++++||||.|++||+|+||
T Consensus 172 ~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 251 (389)
T PRK08068 172 YLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAF 251 (389)
T ss_pred EEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEe
Confidence 888999999999999999999999999999999999999988875333333 2233456889999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhhc-CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNIS-SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+......+ .+.+++.|.++..++.+ ...++++.++.++++++.+.+.|+++ ++. +..|
T Consensus 252 ~~~~~--------~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~-~~~~ 320 (389)
T PRK08068 252 AVGNE--------SVIEAINLLQDHLFVSLFGAIQDAAIEALLS-DQSCVAELVARYESRRNAFISACREI-GWE-VDAP 320 (389)
T ss_pred EecCH--------HHHHHHHHHHhhccCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCC
Confidence 99988 9999998775533 35566678888888864 35889999999999999999999987 665 5688
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF 238 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~ 238 (246)
.||+|+|++++... ++.++...+++++||.+.||..|+. ++++|++++.+++.+.+++++|.++
T Consensus 321 ~g~~~~~v~~~~~~-----~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 321 KGSFFAWMPVPKGY-----TSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred CeeEEEEEECCCCC-----CHHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 99999999887532 3566666666678999999998875 6899999998888999999998764
No 31
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=268.42 Aligned_cols=227 Identities=23% Similarity=0.427 Sum_probs=196.1
Q ss_pred hhhhhhhc---cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445 2 ELINQDIT---RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL 74 (246)
Q Consensus 2 e~~~~~~~---~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (246)
|.++.... ++ +++++ ||||.++|.+.+++|+++|++||++||+||+|+++.+++.+..++..++..++||++
T Consensus 216 e~le~~~~~~~~k~~y~~P~~q-NPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~ 294 (459)
T COG1167 216 EALEEALAQWKPKAVYVTPTFQ-NPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYL 294 (459)
T ss_pred HHHHHHHhhcCCcEEEECCCCC-CCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEE
Confidence 45555554 33 66655 999999999999999999999999999999999999998777788889888999999
Q ss_pred cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHH
Q 042445 75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADK 152 (246)
Q Consensus 75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 152 (246)
+||||. ..||+|+||+++|. ++++.+..... ...+++.+.|.+++..+.++. ++|+.+++..|+++++.
T Consensus 295 gSFSK~-l~PglRlG~vv~p~--------~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~ 365 (459)
T COG1167 295 GSFSKT-LAPGLRLGYVVAPP--------ELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDA 365 (459)
T ss_pred eeehhh-cccccceeeeeCCH--------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999 69999999999999 99999887744 455889999999999999654 89999999999999999
Q ss_pred HHHHhhc-CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-CCCcCC----CCeEEEEeec-Ch
Q 042445 153 CCDRLKE-IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVGL----KDWLRITFAV-EP 225 (246)
Q Consensus 153 l~~~L~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~----~~~iRls~~~-~~ 225 (246)
+.+.|++ .++...+..|.||+|+|++++... +...+...+.++|+.+.| |..|.. .+++|++++. ++
T Consensus 366 l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~------~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~ 439 (459)
T COG1167 366 LLEALAEYLPELATWTRPEGGLFLWLELPEGI------DARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSE 439 (459)
T ss_pred HHHHHHHhCCCCeeeecCCceEEEEEEcCCCC------CHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCH
Confidence 9999998 454555789999999999998763 445556677789999999 888876 4589999997 89
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042445 226 SALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 226 ~~l~~~~~~l~~~~~~~~~ 244 (246)
+++++++++|.+.+++...
T Consensus 440 e~i~~gi~~l~~~~~~~~~ 458 (459)
T COG1167 440 EEIEEGIKRLAALLREAAA 458 (459)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999987653
No 32
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=100.00 E-value=1e-37 Score=267.28 Aligned_cols=212 Identities=16% Similarity=0.167 Sum_probs=175.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.|++||+|+||
T Consensus 181 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~ 260 (409)
T PRK07590 181 YLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAY 260 (409)
T ss_pred EEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEE
Confidence 77899999999999999999999999999999999999999887644445555543 35799999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHH------------HHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 91 LVTSDPNGILQDSGIVDSI------------KIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l------------~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
+++++ ++++.+ ..... ...++|.+.|.++..++......++++.++.++++++.+.+.|
T Consensus 261 ~i~~~--------~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L 332 (409)
T PRK07590 261 TVVPK--------ELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGL 332 (409)
T ss_pred EEcCH--------HHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 777621 11111 2236899999999999975456789999999999999999999
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRM 235 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l 235 (246)
+++ ++. +..|++|+|+|++++... ++.+++..+++++||.+.||..|+. ++++|+++..+++++++++++|
T Consensus 333 ~~~-~~~-~~~~~g~~f~wi~~~~~~-----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~l~rl 405 (409)
T PRK07590 333 ESA-GFE-VYGGVNAPYIWVKTPDGM-----SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAFGSRENVLEAMERI 405 (409)
T ss_pred Hhc-CCc-eecCCcceEEEEECCCCC-----CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEccCCHHHHHHHHHHH
Confidence 987 565 467889999999987532 3566777777789999999998875 5799999877899999999999
Q ss_pred HHH
Q 042445 236 KAF 238 (246)
Q Consensus 236 ~~~ 238 (246)
.++
T Consensus 406 ~~~ 408 (409)
T PRK07590 406 KKA 408 (409)
T ss_pred Hhh
Confidence 875
No 33
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=1.1e-37 Score=265.21 Aligned_cols=210 Identities=21% Similarity=0.318 Sum_probs=178.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.||++|+|+||
T Consensus 171 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 250 (385)
T PRK09276 171 FINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGF 250 (385)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhhee
Confidence 88899999999999999999999999999999999999999887655555555543 45789999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+..... ...+++.+.|.++..++.+ .+.++++.++.++++++.+.+.|++. ++. +..|
T Consensus 251 ~i~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~ 319 (385)
T PRK09276 251 AVGNA--------DLIAGLGKVKSNVDSGVFQAIQEAGIAALNG-PQEVVEELRKIYQERRDILVEGLRKL-GLE-VEPP 319 (385)
T ss_pred eeCCH--------HHHHHHHHHHhhccCCCCHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCC
Confidence 99988 89998887644 3335777899999999974 47889999999999999999999987 666 5678
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
++|+|+|++++... ++.+++..+++++||.+.||..|+. ++++|++++.+++++.+++++|.+
T Consensus 320 ~~~~~~~v~~~~~~-----~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 320 KATFYVWAPVPKGY-----TSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred CcceEEEEECCCCC-----CHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 89999999887532 4667777777789999999998875 579999999888899999988864
No 34
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=100.00 E-value=1.2e-37 Score=265.76 Aligned_cols=209 Identities=20% Similarity=0.322 Sum_probs=175.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC-CCcc-cc---ccC--CcccEEEEcccccccccC
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT-PFVS-MG---VFG--SIVPLLTLGSISKRGIVP 84 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~-~~---~~~--~~~~~i~~~s~sK~~~~~ 84 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++. ...+ +. ..+ ..+++|+++||||.|++|
T Consensus 171 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~ 250 (396)
T PRK09147 171 FVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVP 250 (396)
T ss_pred EEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCc
Confidence 8889999999999999999999999999999999999999988753 1111 11 122 246899999999999999
Q ss_pred CceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445 85 GLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCI 163 (246)
Q Consensus 85 g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 163 (246)
|+|+||+++++ ++++.+...... ..+++++.|.++...+. .+.++++.++.++++++.+.+.|++. +
T Consensus 251 GlRiG~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~--~ 318 (396)
T PRK09147 251 GLRSGFVAGDA--------ALLKKFLLYRTYHGCAMPPAVQAASIAAWN--DEAHVRENRALYREKFDAVTPILAPV--L 318 (396)
T ss_pred cceeeeecCCH--------HHHHHHHHHhhhcccCCCHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 99999999998 899888776542 34788999999888775 46789999999999999999999874 3
Q ss_pred ccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--------CCeEEEEeecChHHHHHHHHHH
Q 042445 164 TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------KDWLRITFAVEPSALENGLGRM 235 (246)
Q Consensus 164 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------~~~iRls~~~~~~~l~~~~~~l 235 (246)
. +..|++|+|+|++++. ++.+++..+++++||.+.||..|+. .+++|++++.+++++++++++|
T Consensus 319 ~-~~~p~~g~f~~~~~~~-------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl 390 (396)
T PRK09147 319 D-VQLPDAGFYLWAKVPG-------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERI 390 (396)
T ss_pred C-CCCCCeeEEEEEECCC-------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHH
Confidence 3 4678999999999872 3677778878889999999998752 5799999999889999999999
Q ss_pred HHHHH
Q 042445 236 KAFYD 240 (246)
Q Consensus 236 ~~~~~ 240 (246)
.+++.
T Consensus 391 ~~~~~ 395 (396)
T PRK09147 391 VDFCR 395 (396)
T ss_pred HHHhc
Confidence 98773
No 35
>PRK12414 putative aminotransferase; Provisional
Probab=100.00 E-value=1.3e-37 Score=264.56 Aligned_cols=221 Identities=19% Similarity=0.301 Sum_probs=181.3
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s 76 (246)
+.+++.++++ +++|||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. .+++++++|
T Consensus 153 ~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 232 (384)
T PRK12414 153 DEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSS 232 (384)
T ss_pred HHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEec
Confidence 3445555433 88899999999999999999999999999999999999999987654445544433 458999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
|||.|++||+|+||+++++ ++++.+..... ...++|.+.|.++..+|.++. +..+.++.++++++.+.+
T Consensus 233 fSK~~~~pGlRiG~~v~~~--------~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~r~~l~~ 302 (384)
T PRK12414 233 FGKSYHVTGWRVGYCLAPA--------ELMDEIRKVHQFMVFSADTPMQHAFAEALAEPA--SYLGLGAFYQRKRDLLAR 302 (384)
T ss_pred ccccccCccceEEEEecCH--------HHHHHHHHHHhheecCCCcHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 88988887654 344789999999999998532 334578889999999999
Q ss_pred HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHH
Q 042445 156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENG 231 (246)
Q Consensus 156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~ 231 (246)
.|++. ++. +.+|.||+|+|++++... + .++.+++..+++++||.+.||..|+. .+++|++++.++++++++
T Consensus 303 ~L~~~-g~~-~~~~~gg~~~~~~~~~~~--~-~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~ 377 (384)
T PRK12414 303 ELAGS-RFE-LLPSEGSFFMLARFRHFS--D-ESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKDDATLVEG 377 (384)
T ss_pred HHHhC-CCe-ecCCCcceEEEEcccccC--C-CCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCCHHHHHHH
Confidence 99987 565 568899999998886411 0 13677877888999999999998853 579999999989999999
Q ss_pred HHHHHH
Q 042445 232 LGRMKA 237 (246)
Q Consensus 232 ~~~l~~ 237 (246)
+++|.+
T Consensus 378 ~~rl~~ 383 (384)
T PRK12414 378 ARRLCS 383 (384)
T ss_pred HHHHhh
Confidence 999874
No 36
>PRK09265 aminotransferase AlaT; Validated
Probab=100.00 E-value=2.9e-37 Score=264.13 Aligned_cols=228 Identities=22% Similarity=0.374 Sum_probs=178.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++..+.++..+....++++++||||.|++||+|+||+
T Consensus 173 ~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~ 252 (404)
T PRK09265 173 VIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWM 252 (404)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEE
Confidence 88899999999999999999999999999999999999999987655556555555557999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPE 170 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 170 (246)
+++....... .+++.+........++|.++|.++..+|..... ....+..+.+.++++.+.+.|++++++. +..|+
T Consensus 253 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~-~~~p~ 329 (404)
T PRK09265 253 VLSGPKKHAK--GYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAIPGVS-CVKPK 329 (404)
T ss_pred EEeCchHHHH--HHHHHHHHHhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-ccCCC
Confidence 9753210000 234444333223347899999999999974221 2222223467788999999998887776 57899
Q ss_pred CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
+|+|+|++++.... +..++.+++.+++.++||.+.||..|+. ++++|++++.+++.+++++++|.++++++.
T Consensus 330 ~g~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~~~ 403 (404)
T PRK09265 330 GALYAFPKLDPKVY-PIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDDLEEAIGRIGRFLSGYR 403 (404)
T ss_pred cceEEEEEeccccc-CCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999875311 1113667788899999999999999864 689999998899999999999999998764
No 37
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-39 Score=259.70 Aligned_cols=226 Identities=25% Similarity=0.376 Sum_probs=193.7
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s 76 (246)
+.++..++++ ++|+||||||.++|++++++|+++|++||+++|.||+|..+.+++..+.....+ +.+++++.++|
T Consensus 163 ~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS 242 (420)
T KOG0257|consen 163 EELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGS 242 (420)
T ss_pred HHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEecc
Confidence 4566777776 999999999999999999999999999999999999999999998767776666 44789999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchH-------HHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEE-------EFFSKIIDILRE 148 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~-------~~~~~~~~~~~~ 148 (246)
+||.|+++|||+||+++++ .++..+...+ +..+.++...|.|.++++..+.. .++.++...|++
T Consensus 243 ~gKtf~~TGWrlGW~igp~--------~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~ 314 (420)
T KOG0257|consen 243 FGKTFGVTGWRLGWAIGPK--------HLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKE 314 (420)
T ss_pred ccceeeeeeeeeeeeechH--------HhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHH
Confidence 9999999999999999977 8888888774 45668899999999998886542 455669999999
Q ss_pred HHHHHHHHhhcCCCCccccCCCCceEEEEEecccc-------ccCCCChHHHHHHHHHhcCeEEecCCCcCC-------C
Q 042445 149 TADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-------LEGINSDMEFALKLAKEESVIVLPGITVGL-------K 214 (246)
Q Consensus 149 ~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------~ 214 (246)
+|+.+.+.|+++ |+. +..|+|++|+|++++... .....++..+...++++.|+.+.|++.|+. .
T Consensus 315 krdil~k~L~~l-g~~-v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~ 392 (420)
T KOG0257|consen 315 KRDILAKALEEL-GLK-VTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAE 392 (420)
T ss_pred HHHHHHHHHHhc-CCc-cccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHH
Confidence 999999999999 888 689999999999998211 112235778899999999999999999987 4
Q ss_pred CeEEEEeecChHHHHHHHHHHHH
Q 042445 215 DWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 215 ~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
+.+|+++..+++.++.+.+++++
T Consensus 393 ~~~r~~~~k~~~~L~~a~e~l~~ 415 (420)
T KOG0257|consen 393 RLVRFCFCKADETLRKAIERLKK 415 (420)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhh
Confidence 67888888899999999999883
No 38
>PRK09082 methionine aminotransferase; Validated
Probab=100.00 E-value=8.6e-38 Score=265.84 Aligned_cols=221 Identities=19% Similarity=0.223 Sum_probs=184.7
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEccc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSI 77 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~ 77 (246)
.+++.++++ ++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. .+++++++||
T Consensus 155 ~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~ 234 (386)
T PRK09082 155 RFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSF 234 (386)
T ss_pred HHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeec
Confidence 445544443 78899999999999999999999999999999999999999987654555554433 5689999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
||.|+++|+|+||+++++ ++++.++.... ..++++.+.|.++..++.. .+.++++.++.++++++.+.+.
T Consensus 235 SK~~~~~G~RiG~iv~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~ 305 (386)
T PRK09082 235 GKTYHVTGWKVGYCVAPA--------ALSAEFRKVHQYNTFTVNTPAQLALADYLRA-EPEHYLELPAFYQAKRDRFRAA 305 (386)
T ss_pred hhhccchhhhhhhhhCCH--------HHHHHHHHHHhhhcCCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 99998887753 3447899999999999974 4678888999999999999999
Q ss_pred hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHHH
Q 042445 157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENGL 232 (246)
Q Consensus 157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~~ 232 (246)
|++. ++. +..|+||+|+|++++.. ++ .++.+++..+++++||.+.||..|+. .+++|++++.+++.+++++
T Consensus 306 L~~~-~~~-~~~~~g~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~ 380 (386)
T PRK09082 306 LANS-RFK-LLPCEGTYFQLVDYSAI--SD-LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAA 380 (386)
T ss_pred HHhC-CCc-ccCCCeeEEEEEecccc--CC-CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHH
Confidence 9986 566 56789999999998741 01 14667777778899999999998853 5799999999889999999
Q ss_pred HHHHH
Q 042445 233 GRMKA 237 (246)
Q Consensus 233 ~~l~~ 237 (246)
++|++
T Consensus 381 ~rl~~ 385 (386)
T PRK09082 381 ERLCQ 385 (386)
T ss_pred HHHhh
Confidence 99875
No 39
>PRK07568 aspartate aminotransferase; Provisional
Probab=100.00 E-value=4.8e-37 Score=262.34 Aligned_cols=227 Identities=22% Similarity=0.361 Sum_probs=187.1
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s 76 (246)
|.+++.+.++ ++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++..+.++..+.. .+++++++|
T Consensus 153 ~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S 232 (397)
T PRK07568 153 EEIEKLITPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDS 232 (397)
T ss_pred HHHHHhcCccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEec
Confidence 3444444443 78899999999999999999999999999999999999999887655555555543 578999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
|||.|+++|+|+||+++++. ++++.+........++|.+.|.++..+++. .+.++++.++.++++++.+.+.
T Consensus 233 ~SK~~~~~G~R~G~~~~~~~-------~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~ 304 (397)
T PRK07568 233 VSKRYSACGARIGCLISKNK-------ELIAAAMKLCQARLSPPTLEQIGAAALLDT-PESYFDEVREEYKKRRDILYEE 304 (397)
T ss_pred chhhccCCCcceEEEecCCH-------HHHHHHHHHhhccCCCCcHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999642 777777655333347899999999999985 3678999999999999999999
Q ss_pred hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHh-----cCeEEecCCCcCC-----CCeEEEEeecChH
Q 042445 157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKE-----ESVIVLPGITVGL-----KDWLRITFAVEPS 226 (246)
Q Consensus 157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~gi~v~pg~~f~~-----~~~iRls~~~~~~ 226 (246)
|++++++. +..|+||+|+|++++.. ++.++...++++ +||.+.||..|+. .+++|++++.+++
T Consensus 305 L~~~~~~~-~~~p~g~~~~~~~l~~~------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~ 377 (397)
T PRK07568 305 LNKIPGVV-CEKPKGAFYIIAKLPVD------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEE 377 (397)
T ss_pred HhcCCCce-ecCCCcceEEEEecCCC------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHH
Confidence 99887766 57889999999988642 356666666654 6999999998842 4799999998889
Q ss_pred HHHHHHHHHHHHHHHHh
Q 042445 227 ALENGLGRMKAFYDRHA 243 (246)
Q Consensus 227 ~l~~~~~~l~~~~~~~~ 243 (246)
++++++++|.++++++.
T Consensus 378 ~~~~~~~~l~~~l~~~~ 394 (397)
T PRK07568 378 DLKRAMEILKEALEKYN 394 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998765
No 40
>PRK05942 aspartate aminotransferase; Provisional
Probab=100.00 E-value=3e-37 Score=263.23 Aligned_cols=211 Identities=19% Similarity=0.313 Sum_probs=179.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++..+.++..+.. .+.+|+++||||.|++||+|+||
T Consensus 175 ~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~ 254 (394)
T PRK05942 175 YFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGF 254 (394)
T ss_pred EEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheee
Confidence 77899999999999999999999999999999999999999987654445544433 34679999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.++.... ...+++.+.|.++..+++. .+.++++.++.++++++.+.+.|++. ++. +..|
T Consensus 255 i~~~~--------~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~~ 323 (394)
T PRK05942 255 VVGNR--------HIIQGLRTLKTNLDYGIFSALQKAAETALQL-PDSYLQQVQERYRTRRDFLIQGLGEL-GWN-IPPT 323 (394)
T ss_pred eecCH--------HHHHHHHHHHhhcccCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCC
Confidence 99988 99999987754 2347888999999999974 46789999999999999999999887 665 5678
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF 238 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~ 238 (246)
++|+|+|++++... ++.+++.++++++||.+.||..|+. ++++|++++.+.+.+.+++++|.++
T Consensus 324 ~~~~f~~~~~~~~~-----~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 324 KATMYLWVPCPVGM-----GSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGEALDRLKQA 389 (394)
T ss_pred CeeeEEEEECCCCC-----CHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 99999999987432 3667777788899999999998864 6899999998888899999988764
No 41
>PRK06108 aspartate aminotransferase; Provisional
Probab=100.00 E-value=3.3e-37 Score=262.08 Aligned_cols=214 Identities=25% Similarity=0.436 Sum_probs=181.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC-CCCCcccccc-CCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG-NTPFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
++++||||||.++|.+++++|+++|+++|+++|+||+|.++.++ +....+...+ ...+++++++||||.|+++|+|+|
T Consensus 163 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG 242 (382)
T PRK06108 163 FINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLG 242 (382)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCccccee
Confidence 78899999999999999999999999999999999999999886 3333333333 334689999999999999999999
Q ss_pred EEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK 168 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 168 (246)
|+++++ ++++.+..... .+.+++++.|.++..+|.+. +.++++.++.++++++.+.+.|++++++. +..
T Consensus 243 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~ 312 (382)
T PRK06108 243 WLVAPP--------ALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG-EDFVAELVARLRRSRDHLVDALRALPGVE-VAK 312 (382)
T ss_pred eeeCCH--------HHHHHHHHHHHhcccCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccC
Confidence 999988 88988877644 24468999999999999853 67888999999999999999998887777 567
Q ss_pred CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
|++|+|+|++++... ++.+++..+++++||.+.||..|+. ++++|+|++.+++++++++++|.++++
T Consensus 313 p~~g~~~~~~l~~~~-----~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 313 PDGAMYAFFRIPGVT-----DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFARDPARLDEAVERLRRFLA 381 (382)
T ss_pred CCeeEEEEEeCCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 899999999887432 3567777777889999999998864 689999999999999999999998874
No 42
>PRK07683 aminotransferase A; Validated
Probab=100.00 E-value=6.7e-37 Score=260.41 Aligned_cols=217 Identities=21% Similarity=0.365 Sum_probs=183.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++. ..++..+ +..+++++++||||.|++||+|+||
T Consensus 166 ~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~ 244 (387)
T PRK07683 166 VLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMREKTIVINGLSKSHSMTGWRIGF 244 (387)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccCCcCCeEEEeeccccccCccceeEE
Confidence 7889999999999999999999999999999999999999988653 3344444 3456899999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+...... ..+++.+.|.++..++.++ ..++++.++.++++++.+.+.|++. ++. +..|
T Consensus 245 i~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~ 313 (387)
T PRK07683 245 LFAPS--------YLAKHILKVHQYNVTCASSISQYAALEALTAG-KDDAKMMRHQYKKRRDYVYNRLISM-GLD-VEKP 313 (387)
T ss_pred EEcCH--------HHHHHHHHHHHhccCCCChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCC
Confidence 99998 889988866433 2367889999999999753 4578888999999999999999887 565 5688
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHhh
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~ 244 (246)
++|+|+|+.++... .++.+++.++++++||.+.||..|+. ++++|++++.+++++++++++|.+++++..+
T Consensus 314 ~~~~~~~~~~~~~~----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~~~~ 386 (387)
T PRK07683 314 TGAFYLFPSIGHFT----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAYSIETLKEGLDRLEAFLQQKAK 386 (387)
T ss_pred CeeEEEEEecccCC----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999998876421 13667777888999999999999865 6899999999999999999999999876544
No 43
>PRK08912 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-37 Score=261.51 Aligned_cols=217 Identities=19% Similarity=0.292 Sum_probs=181.6
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. .+++++++||||.|+++|+|+||
T Consensus 164 ~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~ 243 (387)
T PRK08912 164 LLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGF 243 (387)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEE
Confidence 88899999999999999999999999999999999999999887644445444433 46899999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+...... ..+.++..|.++..++.. .+.++++.++.++++++.+.+.|++. |+. +..|
T Consensus 244 ~~~~~--------~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~ 312 (387)
T PRK08912 244 VCAAP--------PLLRVLAKAHQFLTFTTPPNLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRRI-GFP-VLPS 312 (387)
T ss_pred EecCH--------HHHHHHHHHHhhccccCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCC
Confidence 99988 899988776543 346777889988888863 46788899999999999999999987 666 5678
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
++|+|+|++++.... ..++.+++..+++++||.+.||..|+. .+++|++++.+++.+++++++|.+++++
T Consensus 313 ~g~~~l~~~l~~~~~--~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 313 QGTYFLTVDLAPLGL--AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARRR 386 (387)
T ss_pred CcceEEEecccccCC--CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 899999998874110 014667777777889999999998853 5899999999899999999999998764
No 44
>PRK07337 aminotransferase; Validated
Probab=100.00 E-value=7.2e-37 Score=260.47 Aligned_cols=225 Identities=19% Similarity=0.320 Sum_probs=182.8
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS 78 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 78 (246)
.+++.+.++ ++++||||||.++|.+++++|+++|+++++++|+||+|.++.+++. +.+...+ .+++++++|||
T Consensus 155 ~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~--~~~vi~~~S~S 231 (388)
T PRK07337 155 DVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSALSL--GDDVITINSFS 231 (388)
T ss_pred HHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChhhc--cCCEEEEEech
Confidence 444444433 8899999999999999999999999999999999999999888654 2222222 35799999999
Q ss_pred cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
|.|+++|+|+||+++++ ++++.+..... ...++|.+.|.++..++.+....+.++.++.++++++.+.+.|
T Consensus 232 K~~~~~G~RiG~~~~~~--------~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L 303 (388)
T PRK07337 232 KYFNMTGWRLGWLVVPE--------ALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPAL 303 (388)
T ss_pred hhcCCchhheeeeecCH--------HHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 89998887754 3447899999999999975444556888999999999999999
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeecChHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALENGLGR 234 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~~~~~l~~~~~~ 234 (246)
+++ ++..+..|++|+|+|++++....++..++.+++..+++++||.+.||..|+. .+++|++++.+++.+++++++
T Consensus 304 ~~~-~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~r 382 (388)
T PRK07337 304 ESL-GFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVAR 382 (388)
T ss_pred Hhc-CCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 987 5543357899999999987421011124667777888899999999999975 589999999989999999999
Q ss_pred HHHHH
Q 042445 235 MKAFY 239 (246)
Q Consensus 235 l~~~~ 239 (246)
|.+++
T Consensus 383 l~~~l 387 (388)
T PRK07337 383 LGKLF 387 (388)
T ss_pred HHHHh
Confidence 98765
No 45
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=100.00 E-value=7e-37 Score=260.62 Aligned_cols=217 Identities=19% Similarity=0.387 Sum_probs=181.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++..+.++..+.. +++++++||||.|++||+|+||+
T Consensus 171 ~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~g~~GlRvG~~ 249 (391)
T PRK07309 171 ILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLP-DQTILINGLSKSHAMTGWRIGLI 249 (391)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhcc-CCEEEEecChhhccCccceeEEE
Confidence 78899999999999999999999999999999999999999986544445444433 58999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE 170 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 170 (246)
++++ ++++.+...... ..++|++.|.++..+++++ ..+....++.++++++.+.+.|++. ++. +..|+
T Consensus 250 v~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~p~ 318 (391)
T PRK07309 250 FAPA--------EFTAQLIKSHQYLVTAATTMAQFAAVEALTNG-KDDALPMKKEYIKRRDYIIEKMTDL-GFK-IIKPD 318 (391)
T ss_pred EeCH--------HHHHHHHHHHhhcccCCChHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCC
Confidence 9998 999988876442 3478999999999999864 3334667788899999999999887 666 57889
Q ss_pred CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
+|+|+|++++... + .++.+++..+++++||.+.||..|+. ++++|++++.+.+++++++++|.+++++++
T Consensus 319 gg~~~~~~l~~~~--~-~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~~ 390 (391)
T PRK07309 319 GAFYIFAKIPAGY--N-QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASMETIKEAMKRLKEYMEEHA 390 (391)
T ss_pred eeEEEEEECCCCC--C-CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999887531 0 13566777788889999999998876 689999999888899999999999997764
No 46
>PLN02231 alanine transaminase
Probab=100.00 E-value=6.1e-37 Score=267.99 Aligned_cols=225 Identities=18% Similarity=0.233 Sum_probs=178.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC-CCCCccccccC-------CcccEEEEccccccc-c
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG-NTPFVSMGVFG-------SIVPLLTLGSISKRG-I 82 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~-------~~~~~i~~~s~sK~~-~ 82 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.|+ +..+.++..+. ...++++++||||.| +
T Consensus 276 vl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g 355 (534)
T PLN02231 276 VVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYG 355 (534)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCccccc
Confidence 88899999999999999999999999999999999999999995 34455554332 123699999999975 7
Q ss_pred cCCceEEEEEee--CCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhc-----h-HH---HHHHHHHHHHHHHH
Q 042445 83 VPGLRLGWLVTS--DPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKT-----E-EE---FFSKIIDILRETAD 151 (246)
Q Consensus 83 ~~g~r~G~i~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~-----~-~~---~~~~~~~~~~~~~~ 151 (246)
+||+|+||++++ +. ++++.+........+.+.+.|.++..+++.+ . +. +..+.++.++++++
T Consensus 356 ~pGlRiGy~~~~~~~~-------~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~ 428 (534)
T PLN02231 356 ECGKRGGYMEVTGFTS-------DVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAK 428 (534)
T ss_pred CCccceEEEEEecCCH-------HHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 899999999874 22 7888887765544467888999998888642 1 23 34456789999999
Q ss_pred HHHHHhhcCCCCccccCCCCceEEEEEeccc--cc-----cCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEe
Q 042445 152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYS--LL-----EGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITF 221 (246)
Q Consensus 152 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~--~~-----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~ 221 (246)
.+.+.|++++|+. +..|+||||+|+++... .. .+...+..++..++++.||.++||+.|+. ..++|+++
T Consensus 429 ~l~~~L~~~~gi~-~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~ 507 (534)
T PLN02231 429 TLEDALNSLEGVT-CNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTI 507 (534)
T ss_pred HHHHHHhcCCCce-ecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEe
Confidence 9999999988887 57899999999665421 10 01112444567788899999999999985 45799999
Q ss_pred ecChHHHHHHHHHHHHHHHHHhh
Q 042445 222 AVEPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 222 ~~~~~~l~~~~~~l~~~~~~~~~ 244 (246)
..+++++++++++|.++++++.+
T Consensus 508 ~~~~e~l~eal~RL~~~~~~~~~ 530 (534)
T PLN02231 508 LPQEDKIPAIVSRLTEFHKSFMD 530 (534)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999988764
No 47
>PRK08363 alanine aminotransferase; Validated
Probab=100.00 E-value=1.1e-36 Score=260.11 Aligned_cols=218 Identities=23% Similarity=0.380 Sum_probs=182.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. +.++..+....++++++||||.|++||+|+||+
T Consensus 171 ~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~ 249 (398)
T PRK08363 171 AVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYI 249 (398)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHcCcCCcEEEEecchhccCCccceEEEE
Confidence 8889999999999999999999999999999999999999988653 334455555668999999999999999999999
Q ss_pred Ee--eCCCCCcchhhHHHHHHHHhh----hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445 92 VT--SDPNGILQDSGIVDSIKIFLN----ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC 165 (246)
Q Consensus 92 ~~--~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 165 (246)
++ ++ ++++.+..... ...++|.+.|.++..+|.. .++++++.++.++++++.+.+.|++++++.
T Consensus 250 ~~~~~~--------~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~- 319 (398)
T PRK08363 250 YFVDPE--------GKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGIS- 319 (398)
T ss_pred EEeCcH--------HHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCE-
Confidence 98 44 66666654422 2237899999999999974 478899999999999999999999887766
Q ss_pred ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
+..|+||+|+|++++... ..++.+++..+++++||.+.||..|+. ++++|++++.+++++++++++|.+++.+..
T Consensus 320 ~~~p~g~~~~~~~l~~~~---~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~~~~~~ 396 (398)
T PRK08363 320 TTKPQGAFYIFPRIEEGP---WKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLPPVEILEEAMDRFEEFMRERL 396 (398)
T ss_pred ecCCCeEEEEEEEeccCC---CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 568899999999887521 013667778888999999999999875 589999998888999999999999987643
No 48
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=100.00 E-value=8.7e-37 Score=260.92 Aligned_cols=212 Identities=16% Similarity=0.133 Sum_probs=172.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++..+.++..++. .+++|+++||||.||+||+|+||
T Consensus 178 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~ 257 (402)
T TIGR03542 178 YLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGW 257 (402)
T ss_pred EEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEE
Confidence 77899999999999999999999999999999999999999876543344444443 46799999999999999999999
Q ss_pred EEeeCCCCCcchhhHH--------HHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445 91 LVTSDPNGILQDSGIV--------DSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP 161 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~--------~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 161 (246)
+++++ +++ ..+.... ....++|.+.|.++..++.+....+..+.++.++++++.+.+.|++.
T Consensus 258 ~i~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~- 328 (402)
T TIGR03542 258 TVVPK--------ELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA- 328 (402)
T ss_pred EEecH--------HHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 99988 665 2222221 22336888999999999986444567777888999999999999986
Q ss_pred CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHH
Q 042445 162 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAF 238 (246)
Q Consensus 162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~ 238 (246)
++. +..|++|+|+|++++... ++.+++..+++++||.+.||..|+. .+++|++++.+++++++++++|.++
T Consensus 329 ~~~-~~~~~~~~f~~v~l~~~~-----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 329 GFK-VYGGEHAPYLWVKTPEGI-----SSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFGKRENIVEACERIKEA 401 (402)
T ss_pred Cce-ecCCCceeEEEEECCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHhh
Confidence 565 456789999999987532 4667777778788999999998865 5899999877899999999999875
No 49
>PRK08361 aspartate aminotransferase; Provisional
Probab=100.00 E-value=4.3e-37 Score=262.04 Aligned_cols=216 Identities=22% Similarity=0.386 Sum_probs=182.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||.++|.+++++|+++|+++++++|+||+|.++.+++....++..+.. +++++++||||.|+++|+|+||+
T Consensus 171 ~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~GlRiG~~ 249 (391)
T PRK08361 171 VINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP-DNTILANSFSKTFAMTGWRLGFV 249 (391)
T ss_pred EEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCC-CCEEEEecCchhcCCcHhhhhhh
Confidence 88899999999999999999999999999999999999999886544444444433 57999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
++++ ++++.+..... ...+++.+.|.++..++.++. ..++++.++.++++++.+.+.|++++++. +..|
T Consensus 250 ~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~p 320 (391)
T PRK08361 250 IAPE--------QVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIK-VFEP 320 (391)
T ss_pred ccCH--------HHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCe-ecCC
Confidence 9988 88888876644 234788999999999998644 36799999999999999999999987776 5788
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
+||+|+|++++.... ++.++...+++++||.+.||..|+. ++++|++++.+++++++++++|.+++++
T Consensus 321 ~g~~~~~~~l~~~~~----~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 321 KGAFYVFANIDETGM----SSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYATSKEKLIEAMERMEKALEE 390 (391)
T ss_pred CEEEEEEEECCCCCC----CHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999999874211 4667766666789999999999876 6899999999888999999999998864
No 50
>PRK05764 aspartate aminotransferase; Provisional
Probab=100.00 E-value=2.4e-36 Score=257.76 Aligned_cols=221 Identities=26% Similarity=0.428 Sum_probs=186.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc--CCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF--GSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
++++||||||.++|.+++++|+++|++||+++|+||+|.++.+++..+.+...+ +..+++++++||||.|+++|+|+|
T Consensus 169 ~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG 248 (393)
T PRK05764 169 ILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLG 248 (393)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeE
Confidence 889999999999999999999999999999999999999998865444444443 334689999999999999999999
Q ss_pred EEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK 168 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 168 (246)
|+++++ ++++.+..... .+.+++++.|.++..++.. .+.++++.++.++++++.+.+.|++++++. +..
T Consensus 249 ~i~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~ 318 (393)
T PRK05764 249 YAAGPK--------ELIKAMSKLQSHSTSNPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEIPGLE-CPK 318 (393)
T ss_pred EEecCH--------HHHHHHHHHHhhcccCCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhCCCCc-ccC
Confidence 999988 89998887654 3447899999999999974 467888999999999999999999987777 567
Q ss_pred CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~ 242 (246)
|+||+|+|++++........++.++...+++++||.+.||..|+.++++|++++.+++++++++++|.++++++
T Consensus 319 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 319 PEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYATSLEDLEEGLERIERFLESL 392 (393)
T ss_pred CCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 89999999988753210001246677777788999999999998789999999999999999999999998764
No 51
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00 E-value=1.2e-36 Score=259.52 Aligned_cols=207 Identities=22% Similarity=0.310 Sum_probs=173.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC-CCccc-cc---c--CCcccEEEEcccccccccC
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT-PFVSM-GV---F--GSIVPLLTLGSISKRGIVP 84 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~-~~---~--~~~~~~i~~~s~sK~~~~~ 84 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++. .+.+. .. . +..+++|+++||||.|++|
T Consensus 170 ~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~ 249 (393)
T TIGR03538 170 FVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLP 249 (393)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCc
Confidence 7889999999999999999999999999999999999999987642 22221 11 2 1356899999999999999
Q ss_pred CceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445 85 GLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCI 163 (246)
Q Consensus 85 g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 163 (246)
|+|+||+++++ ++++.+..... ...+++++.|.++...+. .+.++++.++.++++++.+.+.|++. +
T Consensus 250 GlRvG~~i~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~--~ 317 (393)
T TIGR03538 250 GLRSGFVAGDA--------EILKAFLRYRTYHGCAMPIPTQLASIAAWN--DEQHVRENRALYREKFAAVLEILGQV--L 317 (393)
T ss_pred ccceEEEecCH--------HHHHHHHHHHHhhccCcCHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHhh--C
Confidence 99999999998 89998887654 234678999999888886 46789999999999999999999874 2
Q ss_pred ccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--------CCeEEEEeecChHHHHHHHHHH
Q 042445 164 TCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------KDWLRITFAVEPSALENGLGRM 235 (246)
Q Consensus 164 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------~~~iRls~~~~~~~l~~~~~~l 235 (246)
. +..|++|+|+|++++. ++.+++..+++++||.+.||..|+. .+++|++++.+++++++++++|
T Consensus 318 ~-~~~p~gg~f~~~~~~~-------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l 389 (393)
T TIGR03538 318 D-LELPDAGFYLWPKVPG-------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERI 389 (393)
T ss_pred c-ccCCCeeEEEEEECCC-------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHH
Confidence 3 4579999999999871 3566777777789999999998851 5799999998899999999999
Q ss_pred HHH
Q 042445 236 KAF 238 (246)
Q Consensus 236 ~~~ 238 (246)
.++
T Consensus 390 ~~~ 392 (393)
T TIGR03538 390 RSF 392 (393)
T ss_pred HHh
Confidence 875
No 52
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=100.00 E-value=1.8e-36 Score=261.11 Aligned_cols=217 Identities=15% Similarity=0.195 Sum_probs=177.2
Q ss_pred hhhhhhhccc----ccc-CCcCCCccCCChhhHHHHHHHHHHc-CCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445 2 ELINQDITRE----FSD-FQVFHVGSGFSGSFVSPIAETAKKL-GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG 75 (246)
Q Consensus 2 e~~~~~~~~~----~~~-~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (246)
|.+++.++.+ +++ |||||||.++|.+++++|+++|+++ |++||+||+|.++.+++. ...+. . ..+++++++
T Consensus 202 ~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~-~~~~~-~-~~~~vi~~~ 278 (431)
T PRK15481 202 EKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY-HSVIP-Q-TTQRWALIR 278 (431)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC-CCCCc-C-CCCCEEEEe
Confidence 3455544332 555 9999999999999999999999999 999999999999986532 22221 1 235899999
Q ss_pred ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHH
Q 042445 76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKC 153 (246)
Q Consensus 76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l 153 (246)
||||.|+ ||+|+||+++++ ++++.+...... ..++|.+.|.++..+|+++. +.++++.++.++++++.+
T Consensus 279 SfSK~~~-~GlRiG~~i~~~--------~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~ 349 (431)
T PRK15481 279 SVSKALG-PDLRLAFVASDS--------ATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKL 349 (431)
T ss_pred eeccccC-CCceeEEEeCCH--------HHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 9999998 999999999998 888888765433 33689999999999999754 578999999999999999
Q ss_pred HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec-ChHHHH
Q 042445 154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV-EPSALE 229 (246)
Q Consensus 154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~-~~~~l~ 229 (246)
.+.|++. ++. +..|++|+|+|++++.. +.+++. .|.++||.+.||..|+. .+++|+|++. ++++++
T Consensus 350 ~~~L~~~-~~~-~~~p~gg~f~~~~l~~~-------~~~~~~-~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~ 419 (431)
T PRK15481 350 ARALQQY-GIA-IPSPGDGLNLWLPLDTD-------SQATAL-TLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEIN 419 (431)
T ss_pred HHHHHHc-CCc-cccCCCeEEEEEECCCC-------HHHHHH-HHHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHH
Confidence 9999987 665 56899999999988631 445544 56689999999999864 3689999996 889999
Q ss_pred HHHHHHHHHHH
Q 042445 230 NGLGRMKAFYD 240 (246)
Q Consensus 230 ~~~~~l~~~~~ 240 (246)
+++++|.+++.
T Consensus 420 ~~~~~l~~~~~ 430 (431)
T PRK15481 420 RLAADLHQALN 430 (431)
T ss_pred HHHHHHHHHhc
Confidence 99999998863
No 53
>PRK05839 hypothetical protein; Provisional
Probab=100.00 E-value=2e-36 Score=256.28 Aligned_cols=203 Identities=25% Similarity=0.343 Sum_probs=168.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc------CCcccEEEEcccccccccCC
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF------GSIVPLLTLGSISKRGIVPG 85 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~------~~~~~~i~~~s~sK~~~~~g 85 (246)
+++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++ .+.++... ...+++|+++||||.|++||
T Consensus 160 ~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G 238 (374)
T PRK05839 160 ILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSAPG 238 (374)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCCcc
Confidence 788999999999999999999999999999999999999986543 23332211 13368999999999999999
Q ss_pred ceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445 86 LRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCIT 164 (246)
Q Consensus 86 ~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 164 (246)
+|+||+++++ ++++.+..... ...+.+.+.|.++..++. .+.++++.++.++++++.+.+.| ++.
T Consensus 239 lRiG~ii~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l----~~~ 304 (374)
T PRK05839 239 LRSGFIAGDA--------SILKKYKAYRTYLGCASPLPLQKAAAVAWL--DDEHAEFFRNIYAKNLKLAREIL----GIT 304 (374)
T ss_pred ceeEEEecCH--------HHHHHHHHHHhhcCCCCChHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHhc----CCC
Confidence 9999999987 89998887754 233678889999888876 36788888999999999888765 222
Q ss_pred cccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 165 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
.|++|+|+|++++. +.+++..+++++||.+.||..|+. ++++|+|++.+++++++++++|.++++
T Consensus 305 ---~p~gg~fi~~~~~~--------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 305 ---IPPATFYVWLPVDN--------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred ---CCCeeEEEEEeCCC--------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 68999999998862 567777777779999999988764 589999999889999999999999875
No 54
>PRK08175 aminotransferase; Validated
Probab=100.00 E-value=3.7e-36 Score=256.59 Aligned_cols=218 Identities=20% Similarity=0.272 Sum_probs=182.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++....++..+.. .+++++++||||.||+||+|+||
T Consensus 169 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~ 248 (395)
T PRK08175 169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGF 248 (395)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhhee
Confidence 77899999999999999999999999999999999999999887654445444432 45789999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+...... ..+++.+.|.++..++.. .+.++++.++.++++++.+.+.|++. ++. +..|
T Consensus 249 ~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~~p 317 (395)
T PRK08175 249 MVGNP--------ELVSALARIKSYHDYGTFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEA-GWM-VEMP 317 (395)
T ss_pred eeCCH--------HHHHHHHHHHhhcccCCCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCc-ccCC
Confidence 99988 899988876542 336788899999998874 46789999999999999999999987 565 5678
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~~~~ 242 (246)
++|+|+|++++... ...++.+++.++++++||.|.||..|+. ++++|++++.+++.+++++++|.+++++.
T Consensus 318 ~~g~~i~i~l~~~~--~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~~~~~~~~~al~~l~~~l~~~ 390 (395)
T PRK08175 318 KASMYVWAKIPEPY--AAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRAD 390 (395)
T ss_pred CEEEEEEEECCccc--CCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999997532 0013567777778889999999998865 57999999888999999999999998753
No 55
>PRK07777 aminotransferase; Validated
Probab=100.00 E-value=4.3e-36 Score=255.62 Aligned_cols=224 Identities=19% Similarity=0.313 Sum_probs=183.7
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s 76 (246)
|.+++.+.++ ++++||||||.++|.+++++|+++|+++++++|+||+|.++.+++..+.++..+.. .+++++++|
T Consensus 150 ~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S 229 (387)
T PRK07777 150 DALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISS 229 (387)
T ss_pred HHHHHhcCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEee
Confidence 3444444433 88899999999999999999999999999999999999999986654445544432 568999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
|||.|++||+|+||+++++ ++++.+..... ....++.+.|.++..++.. .+.++++.++.++++++.+.+
T Consensus 230 ~SK~~g~~GlRiG~~~~~~--------~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~ 300 (387)
T PRK07777 230 AAKTFNVTGWKIGWACGPA--------PLIAAVRAAKQYLTYVGGAPFQPAVAHALDH-EDAWVAALRDSLQAKRDRLAA 300 (387)
T ss_pred chhhccCcCceeEEEecCH--------HHHHHHHHHHhhcccCCCCHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 88888877644 2336788889998888875 367889999999999999999
Q ss_pred HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----CCeEEEEeecChHHHHH
Q 042445 156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITFAVEPSALEN 230 (246)
Q Consensus 156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~iRls~~~~~~~l~~ 230 (246)
.|+++ ++. +..|++++|+|++++... ..++.+++..+++++||.|.||..|+. .+++|++++.+++++++
T Consensus 301 ~L~~~-~~~-~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~ 375 (387)
T PRK07777 301 GLAEA-GFE-VHDSAGTYFLCADPRPLG---YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDE 375 (387)
T ss_pred HHHhC-CCC-ccCCCcceEEEecccccC---CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHH
Confidence 99987 666 567889999998875311 114677777777789999999998853 46899999999999999
Q ss_pred HHHHHHHHH
Q 042445 231 GLGRMKAFY 239 (246)
Q Consensus 231 ~~~~l~~~~ 239 (246)
++++|.++.
T Consensus 376 ~l~~l~~~~ 384 (387)
T PRK07777 376 AIRRLRALR 384 (387)
T ss_pred HHHHHHHHh
Confidence 999998865
No 56
>PRK06290 aspartate aminotransferase; Provisional
Probab=100.00 E-value=4.8e-36 Score=256.26 Aligned_cols=216 Identities=21% Similarity=0.262 Sum_probs=175.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++. +.++..+.. .+++|+++||||.|++||+|+||
T Consensus 184 ~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ 262 (410)
T PRK06290 184 YLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAF 262 (410)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCCccccEEEEeechhhcCCchhheEe
Confidence 8889999999999999999999999999999999999999988653 334333432 45789999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+...... ..+++.+.|.++..++++ ..++++.++.++++++.+.+.|++. |+. +..|
T Consensus 263 ii~~~--------~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~p 330 (410)
T PRK06290 263 VVGNE--------LIVKAFATVKDNNDSGQFIAIQKAGIYALDH--PEITEKIREKYSRRLDKLVKILNEV-GFK-AEMP 330 (410)
T ss_pred EEeCH--------HHHHHHHHHHhccccCCcHHHHHHHHHHhhC--cHHHHHHHHHHHHHHHHHHHHHHhC-CCe-ecCC
Confidence 99988 899988877543 335567899999999984 4678899999999999999999987 666 5678
Q ss_pred CCceEEEEEeccccccC--CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEG--INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~l~~~~~~l~~~~~~~ 242 (246)
+||+|+|++++.....+ ..++.+++..++++.++.+.||..| .+++|++++. ++++.++.++.|.+.+.+.
T Consensus 331 ~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~--~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 331 GGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDA--GHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred CeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccc--cCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 99999999987532111 1246677777777778888898766 4799999994 6777888888888877654
No 57
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=100.00 E-value=9.1e-36 Score=250.37 Aligned_cols=206 Identities=18% Similarity=0.348 Sum_probs=170.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ..++...+ .+++++++||||.||++|+|+||+
T Consensus 141 ~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~-~~~~i~~~s~SK~~g~~GlRiG~~ 218 (350)
T TIGR03537 141 WINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP-PHSALEVG-IENVLAFHSLSKRSGMTGYRSGFV 218 (350)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC-CCchhhcC-cCCEEEEeecccccCCccccceee
Confidence 8889999999999999999999999999999999999998877653 33343333 358999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE 170 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 170 (246)
++++ ++.+.++..... +.+.+++.|.++...+. .+.++++.++.++++++.+.+.|++. ++. +..|+
T Consensus 219 ~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~-~~~~~ 286 (350)
T TIGR03537 219 AGDE--------KLISFLRKLRANFGVASPDFVQAAAKAAWS--DDNHVLERRKIFKRKRDLFIEFFNKV-GLE-YLYPD 286 (350)
T ss_pred ecCH--------HHHHHHHHHHHhhccCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHC-CCc-ccCCC
Confidence 9887 888888876443 33555578888877776 35678889999999999999999987 665 56889
Q ss_pred CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHH
Q 042445 171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
+|+|+|++++... ++.+++.. |.++||.+.||..|+. ++++|++++.+++++++++++|++
T Consensus 287 g~~~~~~~~~~~~-----~~~~l~~~-L~~~gv~v~~g~~f~~~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 287 ATFYLWVKVPSGI-----DAKDYALR-LLENGIVVAPGENFGSGEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred eEEEEEEECCCCC-----CHHHHHHH-HHHCCEEEcCchhhCCCCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 9999999987532 35555554 5578999999999865 689999998788999999998875
No 58
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=100.00 E-value=1.3e-35 Score=249.72 Aligned_cols=206 Identities=18% Similarity=0.252 Sum_probs=166.6
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++++|+++|+++|+++|+||+|.++.+++.....+..++..+++|+++||||.|++||+|+||+
T Consensus 146 ~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~l 225 (354)
T PRK06358 146 FLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYG 225 (354)
T ss_pred EEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheee
Confidence 68999999999999999999999999999999999999999987644434444555679999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++. .+++.+......+ +++.+.|.++..+++ ...++++.++.++++++.+.+.|++++++. +..|+
T Consensus 226 v~~~~-------~~~~~~~~~~~~~-~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~~~- 293 (354)
T PRK06358 226 LTSNK-------NLAEKLLQMREPW-SINTFADLAGQTLLD--DKEYIKKTIQWIKEEKDFLYNGLSEFKGIK-VYKPS- 293 (354)
T ss_pred ecCCH-------HHHHHHHHhCCCC-cchHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHhcCCCcE-EcCCc-
Confidence 98652 6778887775544 789999999999997 456788899999999999999999887765 44554
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
|.|+|++++. ..++.. .|.++||.+.||..|+. ++++|++++. .++.++.++.|.+++
T Consensus 294 g~f~~~~~~~--------~~~~~~-~l~~~gI~v~~~~~f~~~~~~~iRls~~~-~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 294 VNFIFFKLEK--------PIDLRK-ELLKKGILIRSCSNYRGLDENYYRVAVKS-REDNKKLLKALEVIL 353 (354)
T ss_pred ceEEEEEcCc--------hHHHHH-HHHHCCeEEEECCCCCCCCCCEEEEEeCC-HHHHHHHHHHHHHHh
Confidence 5689988763 445555 45578999999999854 5799999984 444566666665543
No 59
>PRK09275 aspartate aminotransferase; Provisional
Probab=100.00 E-value=6e-36 Score=258.95 Aligned_cols=232 Identities=19% Similarity=0.216 Sum_probs=176.2
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHH--cCCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKK--LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG 75 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~--~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (246)
+.+++.++++ +++|||||||.++|.+++++|+++|++ +|++||+||+|.++.+. +.++.... .+++|+++
T Consensus 232 ~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~s~~~~~-~~~~I~v~ 307 (527)
T PRK09275 232 SELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD---FRSLFAVL-PYNTILVY 307 (527)
T ss_pred HHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc---ccCHHHhC-CCCEEEEe
Confidence 3455555443 889999999999999999999999965 49999999999998742 33333332 35899999
Q ss_pred ccccccccCCceEEEEEeeCCCCCcchhhHHHHH--------------------------------HHH-hhhcCCCCch
Q 042445 76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSI--------------------------------KIF-LNISSDPATF 122 (246)
Q Consensus 76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l--------------------------------~~~-~~~~~~~~~~ 122 (246)
||||.|+++|||+||+++++...+. ++++.+ +.. ...+.++|.+
T Consensus 308 SfSK~f~mtG~RlG~i~~~~~~v~~---~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p 384 (527)
T PRK09275 308 SFSKYFGATGWRLGVIALHEDNVFD---KLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTP 384 (527)
T ss_pred ehhhhccCcHhHHhhhhcCchhHHH---HHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCH
Confidence 9999999999999999998731110 133322 233 2235578888
Q ss_pred HHHHH-----HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEecccc-----------ccC
Q 042445 123 IQGAV-----PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL-----------LEG 186 (246)
Q Consensus 123 ~q~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~-----------~~~ 186 (246)
.|.++ .+++.. .+.+.++.++.+++|++.+.+.|. . ++. ...|+|++|+|++++.-. +..
T Consensus 385 ~Q~a~al~~~~all~~-~~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~-~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~ 460 (527)
T PRK09275 385 QQVQMALFSLFALLDE-EDAYKKAMKDIIRRRYKALYEGLG-L-PEP-EDPNNAAYYTLIDLEEWAEKNYGKEFADYLKK 460 (527)
T ss_pred HHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHcC-C-CCc-CCCCCeeEEEEEEhHHhhhhccCchhhhhhhc
Confidence 88873 344543 467899999999999999988883 2 222 247899999999886421 001
Q ss_pred CCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeec-ChHHHHHHHHHHHHHHHHHhh
Q 042445 187 INSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAV-EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 187 ~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~-~~~~l~~~~~~l~~~~~~~~~ 244 (246)
..++.+++.+++++.||.+.||..|+. .+++|+|++. +++++.++.++|.++++++.+
T Consensus 461 ~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~ 520 (527)
T PRK09275 461 NYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYE 520 (527)
T ss_pred cCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Confidence 125788999999999999999999986 6889999995 889999999999999988764
No 60
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=100.00 E-value=2.8e-35 Score=252.87 Aligned_cols=218 Identities=17% Similarity=0.260 Sum_probs=171.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||+++|.+++++|+++|+++|++||+||+|..+.... .+..... ...+++|+++||||. ++||+|+||+
T Consensus 184 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~-~~~~~vI~~~SfSK~-~~pGlRiG~~ 260 (416)
T PRK09440 184 CVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGI-IFSEATP-LWNPNIILCMSLSKL-GLPGVRCGIV 260 (416)
T ss_pred EEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCc-chhhcCc-cccCCeEEEeccccc-CCCcceEEEE
Confidence 889999999999999999999999999999999999998543111 1111110 114689999999997 9999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhch-HHHHHH-HHHHHHHHHHHHHHHhhc-CCCCc-cc
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTE-EEFFSK-IIDILRETADKCCDRLKE-IPCIT-CP 166 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~-~~~~~~-~~~~~~~~~~~l~~~L~~-~~~~~-~~ 166 (246)
++++ ++++.+...... ..++|.+.|.++..++.++. ..+..+ .++.++++++.+.+.|++ ++++. .+
T Consensus 261 i~~~--------~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~ 332 (416)
T PRK09440 261 IADE--------EIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLI 332 (416)
T ss_pred eCCH--------HHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEE
Confidence 9988 999988877543 34789999999999998654 344444 678889999999999976 44332 14
Q ss_pred cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---------CCeEEEEeecChHHHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---------KDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
..|+||+|+|++++... . ++.++ .+.+.++||.+.||+.|+. .+++|++++.+++++++++++|.+
T Consensus 333 ~~p~gg~fiw~~~~~~~---~-~~~~~-~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~ 407 (416)
T PRK09440 333 HKPEGAIFLWLWFKDLP---I-TTEEL-YQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAE 407 (416)
T ss_pred ecCCCceEEEEECCCCC---C-CHHHH-HHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHH
Confidence 68899999999987521 1 34455 4457889999999998843 258999998889999999999999
Q ss_pred HHHHHhhc
Q 042445 238 FYDRHAEK 245 (246)
Q Consensus 238 ~~~~~~~~ 245 (246)
++++..++
T Consensus 408 ~~~~~~~~ 415 (416)
T PRK09440 408 EVEKAYAE 415 (416)
T ss_pred HHHHHhhc
Confidence 99886654
No 61
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=100.00 E-value=2.3e-35 Score=249.21 Aligned_cols=205 Identities=15% Similarity=0.211 Sum_probs=170.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc---CCcccEEEEcccccccccCCceE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF---GSIVPLLTLGSISKRGIVPGLRL 88 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~---~~~~~~i~~~s~sK~~~~~g~r~ 88 (246)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++.....+... ...+++++++||||.|++||+|+
T Consensus 153 ~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRi 232 (364)
T PRK07865 153 WLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRA 232 (364)
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceee
Confidence 778999999999999999999999999999999999999998875332222111 13468999999999999999999
Q ss_pred EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 89 GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 89 G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
||+++++ ++++.+..... ...+++++.|.++..++.+ +.++++.++.++++++.+.+.|++. |+. +.
T Consensus 233 G~i~~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~ 300 (364)
T PRK07865 233 GFVAGDP--------ALVAELLEVRKHAGMMVPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPALEAA-GFR-VD 300 (364)
T ss_pred EEEecCH--------HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHc-CCc-cc
Confidence 9999988 89998887643 3447899999999999974 6778889999999999999999987 666 56
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMK 236 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~ 236 (246)
.|++|+|+|++++. +...+.+.+.++||.+.||..|+. ++++|++++.+++++++++++|.
T Consensus 301 ~~~~~~~~~~~~~~--------~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 301 HSEAGLYLWATRGE--------DCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred CCCccEEEEEeCCC--------CHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecCCHHHHHHHHHHhh
Confidence 78899999987742 233345667899999999998864 68999999888899999999885
No 62
>PRK07550 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=249.68 Aligned_cols=212 Identities=22% Similarity=0.266 Sum_probs=176.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccccc-CCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++||||||.++|.+++++|+++|+++|++||+||+|.++.+++....+.... +..+++++++||||.|+++|+|+||
T Consensus 168 ~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~ 247 (386)
T PRK07550 168 ALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGA 247 (386)
T ss_pred EEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEe
Confidence 778999999999999999999999999999999999999987654222222222 2345899999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.+..... .+.++|.++|.++..++.. .++++++.++.++++++.+.+.|+.++++. ..+
T Consensus 248 i~~~~--------~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~~ 316 (386)
T PRK07550 248 VVASP--------ARIAEIEKFMDTVAICAPRIGQIAVAWGLPN-LADWRAGNRAEIARRRDAFRAVFARLPGWE--LLA 316 (386)
T ss_pred eecCH--------HHHHHHHHHHhhcccCCCcHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHhCCCce--eCC
Confidence 99988 88888887754 3446799999999999974 478888999999999999999998875654 357
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMKAF 238 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~~~ 238 (246)
.+|+|+|++++... .++.+++..+++++||.+.||..|+. ++++|++++. +++++++++++|.++
T Consensus 317 ~g~~~~~~~~~~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 317 SGAYFAYVRHPFPD----RPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred CceEEEEecCCCCC----CCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 89999999886421 14677777778889999999999865 6899999996 888999999999875
No 63
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=100.00 E-value=2.8e-35 Score=254.49 Aligned_cols=231 Identities=17% Similarity=0.170 Sum_probs=173.6
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
.+++.++++ +++|||||||.++|.+++++|+++|++| |++||+||+|.++.+. +.++.... .+++|+++|
T Consensus 232 ~l~~~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~---~~sl~~~~-~~~vI~v~S 307 (521)
T TIGR03801 232 ELEKLRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD---FRSLFAEL-PYNTIGVYS 307 (521)
T ss_pred HHHHhcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc---ccchhhhC-CCCEEEEEc
Confidence 444444433 7799999999999999999999999987 8999999999988752 33433332 358999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHH--------H------------------------HHHh-hhcCCCCchH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDS--------I------------------------KIFL-NISSDPATFI 123 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~--------l------------------------~~~~-~~~~~~~~~~ 123 (246)
|||.|+++|||+||+++++...+. ++++. + +... ..+.+++.+.
T Consensus 308 fSK~fg~~G~RlG~i~~~~~~v~d---~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~ 384 (521)
T TIGR03801 308 FSKYFGATGWRLGTIALHKDNIFD---KLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQ 384 (521)
T ss_pred chhhccCchhhhhhhhcCchHHHH---HHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHH
Confidence 999999999999999998731000 12211 1 2222 2244677777
Q ss_pred HH-----HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccc-----------cCC
Q 042445 124 QG-----AVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL-----------EGI 187 (246)
Q Consensus 124 q~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~ 187 (246)
|. ++.+++.. .+.|.++.++.+++|++.+.+.| .+ .+. ..+|+|++|+|++++.-.. ...
T Consensus 385 Q~q~al~a~~all~~-~~~y~~~~~~~~~~R~~~l~~~L-g~-~~~-~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~ 460 (521)
T TIGR03801 385 QVQMALFSLFALMDK-ENAYKAETKDICRRREKLLFRGL-GL-PLQ-EDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKN 460 (521)
T ss_pred HHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHhc-CC-CCc-CCCCCeEEEEEeehHHHHHHhcchHHHHHHhcc
Confidence 76 34445543 46799999999999999999988 22 122 2468999999999874210 001
Q ss_pred CChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeec-ChHHHHHHHHHHHHHHHHHhh
Q 042445 188 NSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAV-EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 188 ~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~-~~~~l~~~~~~l~~~~~~~~~ 244 (246)
.++.+++.+++++.||.+.||..|+. .+++|+|++. +++++.++.++|.++++++.+
T Consensus 461 ~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 461 YSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 14788999999999999999999987 5789999994 899999999999999988764
No 64
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=100.00 E-value=2.1e-35 Score=249.45 Aligned_cols=207 Identities=28% Similarity=0.438 Sum_probs=177.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++||||||.++|.+++++|+++|++||+++|+||+|.++.++...+.+ ...+....++++++|+||.||++|+|+||
T Consensus 153 ~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~ 232 (363)
T PF00155_consen 153 LICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGY 232 (363)
T ss_dssp EEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEE
T ss_pred eecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccccccccccc
Confidence 88999999999999999999999999999999999999999988654433 44455556799999999999999999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH--HHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE--EFFSKIIDILRETADKCCDRLKEIPCITCPKK 168 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 168 (246)
+++++ ++++.++.....+ ..+.+.|.++..++.+... +++++.++.++++++.+.+.|++. ++. +..
T Consensus 233 i~~~~--------~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~-~~~ 301 (363)
T PF00155_consen 233 IVAPP--------ELIERLRRFQRSG-LSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GIT-VLP 301 (363)
T ss_dssp EEEEH--------HHHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSE-EEH
T ss_pred ccchh--------hhhhhhhhccccc-cccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhh-eee
Confidence 99988 9999998886655 3499999999999986553 499999999999999999999988 777 466
Q ss_pred CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe-ecChHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-AVEPSALENGLGRM 235 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~-~~~~~~l~~~~~~l 235 (246)
+++|+|+|+.++.. ++.++...++++.||.+.||..|+.++++|+++ ..+++++++++++|
T Consensus 302 ~~~~~~~~~~~~~~------~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 302 PEAGFFLWVRLDPN------DAEELAQELLEEYGILVRPGSYFGVPGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp HSBSSEEEEEESHH------HHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEGGCSCHHHHHHHHHHH
T ss_pred ccCccEEEEEcccc------hHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEeccCCHHHHHHHHhhC
Confidence 77999999988754 256777777776799999999999999999999 45999999999886
No 65
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=100.00 E-value=1.5e-34 Score=243.55 Aligned_cols=204 Identities=16% Similarity=0.227 Sum_probs=168.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccc--c-CCcccEEEEcccccccccCCceE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGV--F-GSIVPLLTLGSISKRGIVPGLRL 88 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~--~-~~~~~~i~~~s~sK~~~~~g~r~ 88 (246)
++++||||||.++|.+++++|+++|+++|+++|+||+|.++.+++.....+.. . ...+++++++||||.|+++|+|+
T Consensus 147 ~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~ 226 (357)
T TIGR03539 147 WLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRA 226 (357)
T ss_pred EEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeE
Confidence 77899999999999999999999999999999999999998886543222211 0 12457999999999999999999
Q ss_pred EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 89 GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 89 G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
||+++++ ++++.+..... ...+++++.|.++..+|. ...++++.+..++++++.+.+.|++. |+. +.
T Consensus 227 G~~i~~~--------~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~-g~~-~~ 294 (357)
T TIGR03539 227 GFVAGDP--------ALVAELLTVRKHAGLMVPAPVQAAMVAALG--DDGHVAEQKARYAARRAQLKPALEKA-GFR-ID 294 (357)
T ss_pred EEEecCH--------HHHHHHHHHHhhcccCCCHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHc-CCC-Cc
Confidence 9999988 88888876643 234789999999999997 35678888999999999999999886 666 57
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRM 235 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l 235 (246)
.|.+|+|+|++++. ++.++ ...|.++||.+.||..|+. ++++|++++.+++++++++++|
T Consensus 295 ~p~~~~~~~~~~~~-------~~~~~-~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 295 HSEAGLYLWATRGE-------DAWDT-VDRLAELGILVAPGDFYGPAGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred CCCccEEEEEECCC-------CHHHH-HHHHHhCCEEECCccccCCCCCCeEEEEecCCHHHHHHHHHhh
Confidence 88999999987743 13444 4567899999999998764 6899999998889999999876
No 66
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=100.00 E-value=8.3e-35 Score=242.80 Aligned_cols=202 Identities=13% Similarity=0.132 Sum_probs=156.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++. ..........+++|+++||||.|++||+|+||+
T Consensus 127 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~ 205 (332)
T PRK06425 127 FIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA-EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYI 205 (332)
T ss_pred EEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccc-hhHHHHhccCCCEEEEeecHHhcCCchhhheee
Confidence 7889999999999999999999999999999999999999987542 222222344568999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE 170 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 170 (246)
++++ ++++.+......+ .++.+.+. ++.... +.++++.++.++++++.+.+.|+++ ++. +..+.
T Consensus 206 v~~~--------~li~~l~~~~~~~-~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~ 270 (332)
T PRK06425 206 ATDD--------YNMKISRKITEPW-SVCDPAID----FIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFR-AAGDP 270 (332)
T ss_pred ecCH--------HHHHHHHHcCCCC-ccCHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ECCCC
Confidence 9998 9999888765433 34444332 333222 5677888999999999999999987 565 34456
Q ss_pred CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
+|+|+|++++ ++.++... |.++||.++||..|+. ++++|++++. .++.+..++.|++++
T Consensus 271 ~g~f~~~~~~--------~~~~~~~~-l~~~gi~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~al~~~~ 331 (332)
T PRK06425 271 SANFITFMIP--------DAHDFYSY-LLKNGILVRLLDDYECLGEQYIRIAIRR-RSFNIKLVNALRNFL 331 (332)
T ss_pred CceEEEEEcC--------CHHHHHHH-HHHCCeEEEECCCCCCCCCCEEEEEeCC-HHHHHHHHHHHHHHh
Confidence 7889998875 15555554 5568999999998854 5799999995 455677777776553
No 67
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-34 Score=233.42 Aligned_cols=222 Identities=21% Similarity=0.292 Sum_probs=188.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-----CcccEEEEcccccccccCCc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-----SIVPLLTLGSISKRGIVPGL 86 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~g~ 86 (246)
+++||+||.|++++++++..+++++.++|+.+|+||+|+..+|+..++.++..+. ..+++.++.|+||-||+||+
T Consensus 231 litNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGf 310 (471)
T KOG0256|consen 231 LITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGF 310 (471)
T ss_pred EEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCce
Confidence 9999999999999999999999999999999999999999999988888875552 34679999999999999999
Q ss_pred eEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch--HHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445 87 RLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE--EEFFSKIIDILRETADKCCDRLKEIPCIT 164 (246)
Q Consensus 87 r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 164 (246)
|+|.+.+.++ +++....+...++ .+|+..|..++.+|++.. +.|+.+.+.+++.+.+.+.+.|+++ ||.
T Consensus 311 RvGviYS~ne-------~VvsaA~kmssf~-~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~ 381 (471)
T KOG0256|consen 311 RVGVIYSNNE-------DVVSAATKMSSFG-LVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIP 381 (471)
T ss_pred EEEEEEecCh-------HHHHHHHHHhhcc-CCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCc
Confidence 9999999985 6666666665555 899999999999999754 6899999999999999999999998 777
Q ss_pred cccCCCCceEEEEEecccccc-CCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeec-ChHHHHHHHHHHHHHHH
Q 042445 165 CPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAV-EPSALENGLGRMKAFYD 240 (246)
Q Consensus 165 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~-~~~~l~~~~~~l~~~~~ 240 (246)
....++|+|+|+++...--. ......+++.+++.+-++.+.||..|.+ +||+|++|+. .++.++-+++||+.++.
T Consensus 382 -cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 382 -CLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred -eeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecCCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 57889999999998642100 1112455667777666999999999887 8999999997 66666669999999997
Q ss_pred HHh
Q 042445 241 RHA 243 (246)
Q Consensus 241 ~~~ 243 (246)
.+.
T Consensus 461 ~~~ 463 (471)
T KOG0256|consen 461 SQV 463 (471)
T ss_pred hhh
Confidence 654
No 68
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=100.00 E-value=1.2e-34 Score=244.55 Aligned_cols=200 Identities=16% Similarity=0.238 Sum_probs=160.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.++ |.++++++++ +|+||+|.++.+++........++..+++|+++||||.|++||+|+||+
T Consensus 153 ~l~nP~NPTG~~~~~~~---l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~ 228 (360)
T PRK07392 153 LLNNPHNPTGKLWSREA---ILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYA 228 (360)
T ss_pred EEeCCCCCCCCCcCHHH---HHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeee
Confidence 88999999999999665 4555677885 6669999999876533322333455568999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ ++|.+.|.++..++++ ..+.++.++.++++++.+.+.|++++++.. .|.+
T Consensus 229 v~~~--------~~~~~~~~~~~~~-~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~~~~ 295 (360)
T PRK07392 229 IAHP--------DRLQRWQQWRDPW-PVNGLAAAAAIAALAD--RDFQQQTWAWLPPAREALFQGLASLPGLTP--LPSA 295 (360)
T ss_pred eCCH--------HHHHHHHhhCCCC-CCCHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEE--CCCC
Confidence 9988 8888887665433 7899999999999984 467777788899999999999998878763 4688
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecC--hHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVE--PSALENGLGRM 235 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~--~~~l~~~~~~l 235 (246)
|+|+|++++. ++.++...+++++||.+.||..|+. ++++|++++.+ .+.+.++++++
T Consensus 296 ~~fl~~~~~~-------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~~~~~l~~al~~~ 356 (360)
T PRK07392 296 ANFLLVQSQG-------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEAENQRLLEALAAI 356 (360)
T ss_pred CCEEEEEcCC-------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 9999988753 2567777777889999999999975 58999999973 35666666654
No 69
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=100.00 E-value=6e-34 Score=237.95 Aligned_cols=202 Identities=9% Similarity=0.064 Sum_probs=165.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++++|++.|.+++.++|+||+|.++... .++..+...+++++++||||.|++||+|+||+
T Consensus 135 ~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~----~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~ 210 (339)
T PRK06959 135 IVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA----ASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFV 210 (339)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc----ccchhccCCCCEEEEecChhhcCCcchheEEE
Confidence 89999999999999999999999999999999999999998643 23333323467999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ ++|.+.|.++..+|+ +..+.++.++.++++++.+.+.|+++ |+.. . .+
T Consensus 211 v~~~--------~li~~l~~~~~~~-~vs~~~q~a~~~~L~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~--~-~~ 275 (339)
T PRK06959 211 LAAP--------ALLAALRDALGAW-TVSGPARHAVRAAFA--DAAWQAAMRERLAADGARLAALLRAH-GFAV--H-AT 275 (339)
T ss_pred ecCH--------HHHHHHHHhcCCC-CCcHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHC-CCCc--c-Cc
Confidence 9998 9999998886655 689999999999998 35688889999999999999999997 5653 2 36
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHhh
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~ 244 (246)
++|+|++++. ..++ ...|.++||.|++ |+..+++|++++.+.++.++.++.|+++++.+..
T Consensus 276 ~~f~~~~~~~--------~~~l-~~~l~~~GI~vr~---~~~~~~lRisi~~~~~e~~~l~~al~~~~~~~~~ 336 (339)
T PRK06959 276 PLFSWTDDPR--------AAAL-HAALARRGIWTRY---FAPPPSVRFGLPADEAEWQRLEDALAECVPTLAA 336 (339)
T ss_pred ceEEEEeCCC--------HHHH-HHHHHhCCeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHHHHhh
Confidence 7999987641 3444 5567788999985 3446799999976667788888888887766543
No 70
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=2.7e-34 Score=242.42 Aligned_cols=202 Identities=17% Similarity=0.223 Sum_probs=161.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.++++++++.|+ ++++||+||+|.+|.+... .....+..+++++++||||.|++||+|+||+
T Consensus 157 ~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~---~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~ 232 (364)
T PRK04781 157 FLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDVPS---AVGLLARYDNLAVLRTLSKAHALAAARIGSL 232 (364)
T ss_pred EEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcc---hHHHHhhCCCEEEEecChhhcccccceeeee
Confidence 77899999999999999999999886 4899999999999885421 2222344578999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ ++|.+.|.++..+|.++...+..+..+.++++++.+.+.|++++++. ...|++
T Consensus 233 v~~~--------~l~~~l~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~p~~ 302 (364)
T PRK04781 233 IANA--------ELIAVLRRCQAPY-PVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVR-RVYPSQ 302 (364)
T ss_pred eCCH--------HHHHHHHhccCCC-CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-eECCCC
Confidence 9998 9999998876554 78999999999999865445566666678999999999999887764 246888
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
|+|+|++++. ..+ +.+.+.++||.|+||..|+. ++++|++++. +++.+..++.|++
T Consensus 303 g~f~~~~~~~--------~~~-~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~~-~~~~~~l~~al~~ 359 (364)
T PRK04781 303 GNFLLVRFDD--------AEA-AFQALLAAGVVVRDQRAAPRLSDALRITLGT-PEQNDRVLAALQR 359 (364)
T ss_pred CcEEEEEcCC--------HHH-HHHHHHHCCeEEeeCCCCCCCCCeEEEeCCC-HHHHHHHHHHHHH
Confidence 9999998852 334 45667899999999987644 7899999995 3334555555544
No 71
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=100.00 E-value=1e-33 Score=236.02 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=157.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++++|+++|+++|++||+||+|.++.. ..++..+...+++++++||||.|++||+|+||+
T Consensus 129 ~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~----~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~ 204 (330)
T PRK05664 129 VVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTP----QHSLAACAHRPGLIVLRSFGKFFGLAGARLGFV 204 (330)
T ss_pred EEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCC----cccccccccCCCEEEEeeccccccCCCcceEEE
Confidence 8899999999999999999999999999999999999987652 124444555678999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ ++|.+.|.++..+|.+ ..+.++.++.++++++.+.+.|+++ ++. |.+
T Consensus 205 v~~~--------~l~~~~~~~~~~~-~~~~~~~~~~~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~-~~~----~~~ 268 (330)
T PRK05664 205 LAEP--------ALLRALAELLGPW-TVSGPTRWLAQAALAD--TPWQRRQRERLLAASQRLAALLRRH-GLT----PAG 268 (330)
T ss_pred EeCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHC-CCc----ccC
Confidence 9998 9999998875544 6789999999999984 4567788899999999999999987 442 344
Q ss_pred c--eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 172 S--MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 172 g--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
| +|+|++++ ++.++ .+.|.++||.|.+ |+..+++|++++.+.++.++..+.|++..+
T Consensus 269 ~~~~f~~~~~~--------~~~~~-~~~l~~~gi~v~~---f~~~~~iRis~~~~~~~~~~l~~al~~~~~ 327 (330)
T PRK05664 269 GCALFQWVRTE--------DAAAL-HEFLARRGILTRL---FEQPASLRFGLPADEADWARLDQALLAYRK 327 (330)
T ss_pred CcceEEEEecC--------CHHHH-HHHHHHCCeEEEE---CCCCCeEEEECCCCHHHHHHHHHHHHHHHh
Confidence 4 77887653 24444 5567789999974 445789999999655556666666655543
No 72
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=100.00 E-value=4.2e-34 Score=240.74 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=162.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+++..+.+. +...+++++++||||.|+++|+|+||+
T Consensus 147 ~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~G~RiG~~ 224 (356)
T PRK08056 147 FLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LADNPHLWVLRSLTKFYAIPGLRLGYL 224 (356)
T ss_pred EEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hccCCCEEEEEechhhccCcchhheee
Confidence 789999999999999999999999999999999999999998765322222 223458999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++. ++++.++.....+ ++|.+.|.++..++. ...+.++.++.++++++.+.+.|++++++.. .|.+
T Consensus 225 v~~~~-------~~~~~l~~~~~~~-~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~~~~ 292 (356)
T PRK08056 225 VNSDD-------AAVARMRRQQMPW-SINAFAALAGEVILQ--DRAYQQATWQWLAEEGARFYQALCALPLLTV--WPGR 292 (356)
T ss_pred ecCCH-------HHHHHHHHhCCCC-chhHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE--cCCC
Confidence 98642 6777777654433 778899999998986 4577888899999999999999998877653 3557
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
|+|+|++++.. +.+++. .|.++||.++||..|.. .+++|++++. +++.+..++.|.+++
T Consensus 293 ~~~~~~~~~~~-------~~~~~~-~l~~~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~~l~~~~ 353 (356)
T PRK08056 293 ANYLFLRCERP-------DIDLQR-ALLTQRILIRSCANYPGLDSRYYRVAIRS-AAENERLLAALRNVL 353 (356)
T ss_pred CcEEEEEcCCC-------hHHHHH-HHHHCCeEEEECCCCCCCCCCEEEEEEcC-HHHHHHHHHHHHHHH
Confidence 89999887632 445544 55579999999998854 5799999984 444555555555543
No 73
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-34 Score=230.46 Aligned_cols=224 Identities=23% Similarity=0.354 Sum_probs=187.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC--------CC-----------CccccccCCcccEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN--------TP-----------FVSMGVFGSIVPLL 72 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--------~~-----------~~~~~~~~~~~~~i 72 (246)
|++.+ ||||..+|.+.+++|+++|++|+++||+||+|..+.++. .+ ..+...++.+++||
T Consensus 210 IPTgq-NPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVI 288 (472)
T KOG0634|consen 210 IPTGQ-NPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVI 288 (472)
T ss_pred CcCCC-CCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEE
Confidence 88888 999999999999999999999999999999999888772 11 11223446678999
Q ss_pred EEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchH----HHHHHHHHHHH
Q 042445 73 TLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEE----EFFSKIIDILR 147 (246)
Q Consensus 73 ~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~ 147 (246)
.+.||||. .+||+|+||+.+++ .+++++...... +.++|.+.|..+.+.|+...+ +|+.+++..|.
T Consensus 289 r~dSFSKi-iaPGlRlG~it~~~--------~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt 359 (472)
T KOG0634|consen 289 RNDSFSKI-IAPGLRLGWITGNS--------LFLKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYT 359 (472)
T ss_pred eccchhhh-hcCcceeEEeecCH--------HHHHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 59999999999998 889988887664 447899999999999886543 89999999999
Q ss_pred HHHHHHHHHhhc-CCCC-ccccCCCCceEEEEEeccccc---cCCCChHHHHHHHHHhcCeEEecCCCcCC------CC-
Q 042445 148 ETADKCCDRLKE-IPCI-TCPKKPEGSMFVMVKLNYSLL---EGINSDMEFALKLAKEESVIVLPGITVGL------KD- 215 (246)
Q Consensus 148 ~~~~~l~~~L~~-~~~~-~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~- 215 (246)
+|+..+..+|.+ +|.- -.+++|.+|+|+|++++-... ++++.-++.+...+.++||.+++|+.|.. +.
T Consensus 360 ~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~ki 439 (472)
T KOG0634|consen 360 ERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKI 439 (472)
T ss_pred HHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcc
Confidence 999999999987 7743 347899999999999972111 12223567788889999999999999864 23
Q ss_pred eEEEEeec-ChHHHHHHHHHHHHHHHHHhhc
Q 042445 216 WLRITFAV-EPSALENGLGRMKAFYDRHAEK 245 (246)
Q Consensus 216 ~iRls~~~-~~~~l~~~~~~l~~~~~~~~~~ 245 (246)
++|++++. +.+++++++++|..+++++...
T Consensus 440 ffRls~a~a~~e~l~~g~~rf~~~ike~f~~ 470 (472)
T KOG0634|consen 440 FFRLSIAFAEPEKLDEGIERFGSVIKEHFIT 470 (472)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999996 8999999999999999987653
No 74
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=1.7e-34 Score=243.59 Aligned_cols=203 Identities=17% Similarity=0.191 Sum_probs=165.6
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||.+++.+++.++++.|+ +|+++|+||+|.++.+++....++..++..+++++++||||.|+++|+|+||+
T Consensus 156 ~i~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~ 234 (359)
T PRK03158 156 WICNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYG 234 (359)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehh
Confidence 77999999999999999999888775 69999999999998876533333344455678999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ ++|+++|.++..++. ...++++.++.++++++.+.+.|++. ++.. .|.+
T Consensus 235 v~~~--------~~~~~~~~~~~~~-~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~~~ 300 (359)
T PRK03158 235 IASE--------ELIEKLNIARPPF-NTTRIAQYAAIAALE--DQAFLKECVEKNAEGLEQYYAFCKEY-GLFY--YPSQ 300 (359)
T ss_pred cCCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCee--CCCc
Confidence 9998 9999888776544 789999999999997 35678888888899999999999887 6653 4567
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~ 238 (246)
|+|+|++++. ++.++.. .|.++||.+.||..|+.++++|++++ +.++.++.++.|+++
T Consensus 301 g~~i~~~~~~-------~~~~~~~-~l~~~gv~v~~g~~f~~~~~iRi~~~-~~~~~~~l~~al~~~ 358 (359)
T PRK03158 301 TNFIFVDTGR-------DANELFE-ALLKKGYIVRSGAALGFPTGVRITIG-LKEQNDKIIELLKEL 358 (359)
T ss_pred CcEEEEECCC-------CHHHHHH-HHHHCCeEEeeCCCCCCCCeEEEecC-CHHHHHHHHHHHHHh
Confidence 8999987742 2455555 45578999999999987899999998 566677777777664
No 75
>PRK08637 hypothetical protein; Provisional
Probab=100.00 E-value=8.4e-34 Score=241.49 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=167.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHH-----cCCEEEEccccCCcccCCCCCccc-ccc-CCcccE--EEEcccccccc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKK-----LGIMVIANEVYGHLAFGNTPFVSM-GVF-GSIVPL--LTLGSISKRGI 82 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~-----~~~~ii~De~y~~~~~~~~~~~~~-~~~-~~~~~~--i~~~s~sK~~~ 82 (246)
+++|||||||.++|.+++++|+++|++ ||++||+||+|.++.+++....++ ..+ +..+++ ++++|+||.|+
T Consensus 151 ~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~ 230 (388)
T PRK08637 151 ILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEF 230 (388)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCC
Confidence 788999999999999999999999875 899999999999999877544343 222 334464 55679999999
Q ss_pred cCCceEEEEEeeCCCCCcchhhHHHHHHHH----h-hhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHH
Q 042445 83 VPGLRLGWLVTSDPNGILQDSGIVDSIKIF----L-NISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 83 ~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~----~-~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~ 156 (246)
+||+|+||++++.... .++++++.+... . ....++|.+.|.++..++.++. ..++++.+..++++++.+.+.
T Consensus 231 ~pGlRlG~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 308 (388)
T PRK08637 231 VWGFRVGFITFGTKAG--SSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEV 308 (388)
T ss_pred CcccceEEEEEccccC--CcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999752000 000666666542 1 1233789999999999998543 456777778899999999999
Q ss_pred hhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHH
Q 042445 157 LKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGL 232 (246)
Q Consensus 157 L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~ 232 (246)
|++.+ ++. +..|++|+|+|++++.. ++.+++..+++++||.+.+. .++++||+++. +.+++++++
T Consensus 309 l~~~~~~~~~~-~~~~~~g~~~~~~l~~~------~~~~l~~~l~~~~gv~~~~~----~~~~iRi~~~~~~~~~i~~~~ 377 (388)
T PRK08637 309 LYDGKYDDAWQ-AYPFNSGYFMCLKLKGV------DAEELRVHLLEKYGIGTIAL----NETDLRIAFSCVEEEDIPELF 377 (388)
T ss_pred HHhhCCCCCcc-cccccceEEEEecCChH------HHHHHHHHHhhhcceEEEec----cCCceEEEeecCCHHHHHHHH
Confidence 87642 455 56789999999988631 35667666667889988753 26799999996 899999999
Q ss_pred HHHHHHHHHH
Q 042445 233 GRMKAFYDRH 242 (246)
Q Consensus 233 ~~l~~~~~~~ 242 (246)
++|.++++++
T Consensus 378 ~~l~~~~~~~ 387 (388)
T PRK08637 378 DSIYKAIKDL 387 (388)
T ss_pred HHHHHHHHhc
Confidence 9999999764
No 76
>PLN02672 methionine S-methyltransferase
Probab=100.00 E-value=7.6e-34 Score=259.78 Aligned_cols=229 Identities=17% Similarity=0.273 Sum_probs=177.4
Q ss_pred hhhhhhhcc---c--cccCCc-CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc--cc----cccCC--
Q 042445 2 ELINQDITR---E--FSDFQV-FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV--SM----GVFGS-- 67 (246)
Q Consensus 2 e~~~~~~~~---~--~~~~p~-NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~--~~----~~~~~-- 67 (246)
+.+++.++. . +++||| ||||.++|.+++++|+++|++||++||+||+|.++.|++.... ++ ..++.
T Consensus 818 d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~s 897 (1082)
T PLN02672 818 KTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSN 897 (1082)
T ss_pred HHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhcccc
Confidence 345665543 2 889997 9999999999999999999999999999999999998754321 11 11221
Q ss_pred -cccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHh-----hc-hHHHHH
Q 042445 68 -IVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILE-----KT-EEEFFS 140 (246)
Q Consensus 68 -~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~-----~~-~~~~~~ 140 (246)
..++++++||||.|+++|+|+||+++++. ++++.+....... .++++.|.++..++. .. ...++.
T Consensus 898 ks~nVIvL~SfSKkf~lpGLRIGylIap~~-------eLi~~l~~~~~~s-~~~~~~q~Aaaaalall~~~~~~~~~~l~ 969 (1082)
T PLN02672 898 PSFAVALLGGLSTELLSGGHEFGFLALNDS-------VLIDAFHSAPGLS-RPHSTLKYTIKKLLGLKNQKSSDLLDGVA 969 (1082)
T ss_pred CCceEEEEeCcHHhhccHHHHheeEEeCCH-------HHHHHHHHhhhhc-CCCcHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 24799999999999999999999999872 4888887764332 445556666555552 11 246788
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccc-----ccc------C-CCChHHHHHHHHHhcCeEEecC
Q 042445 141 KIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYS-----LLE------G-INSDMEFALKLAKEESVIVLPG 208 (246)
Q Consensus 141 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~------~-~~~~~~~~~~ll~~~gi~v~pg 208 (246)
+.++.++++++.+.+.|++. |+. +..|+||+|+|++++.- .++ + ..++.+++..++++.||.+.||
T Consensus 970 e~r~~Lk~rRd~L~e~L~~~-Gi~-v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PG 1047 (1082)
T PLN02672 970 EQKKILKSRAERLKETLEAC-GWD-VLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSS 1047 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCe-EecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecC
Confidence 88999999999999999987 666 67899999999876421 000 0 1146778788887889999999
Q ss_pred CCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 209 ITVGLKDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 209 ~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
.+|+.++|+|++++.+++++++++++|.++++
T Consensus 1048 s~FG~~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1048 SWTGIPGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred cccCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 98888899999999999999999999998764
No 77
>PLN02397 aspartate transaminase
Probab=100.00 E-value=5.7e-34 Score=244.57 Aligned_cols=203 Identities=19% Similarity=0.163 Sum_probs=161.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCccccccC-CcccEEEEcccccccccCCceE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVFG-SIVPLLTLGSISKRGIVPGLRL 88 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~ 88 (246)
++++||||||.++|.+++++|+++|++||++||+||+|.++.+++. ++.++..+. ..+++|+++||||.|+++|+|+
T Consensus 199 ~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~Rv 278 (423)
T PLN02397 199 LHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERV 278 (423)
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccc
Confidence 7788999999999999999999999999999999999999998641 233333332 2347999999999999999999
Q ss_pred EEEE--eeCCCCCcchhhHHHH----HHHHhh-hcCCCCchHHHHHHHHHhhch--HH---HHHHHHHHHHHHHHHHHHH
Q 042445 89 GWLV--TSDPNGILQDSGIVDS----IKIFLN-ISSDPATFIQGAVPQILEKTE--EE---FFSKIIDILRETADKCCDR 156 (246)
Q Consensus 89 G~i~--~~~~~~~~~~~~~~~~----l~~~~~-~~~~~~~~~q~~~~~~l~~~~--~~---~~~~~~~~~~~~~~~l~~~ 156 (246)
||++ +++. ++++. +..... .+.+++.+.|.++..+|.++. +. ++++.++.++++++.+.+.
T Consensus 279 G~~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~ 351 (423)
T PLN02397 279 GALSVVCKSA-------DVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDA 351 (423)
T ss_pred eEEEEEeCCH-------HHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9985 4321 44443 333322 344678889999999998642 23 3788899999999999999
Q ss_pred hhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHH
Q 042445 157 LKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGL 232 (246)
Q Consensus 157 L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~ 232 (246)
|++++ ++. +..|+||+|+|++++ .+++.++++++||.+.++. |++++ .+.+.+++++
T Consensus 352 L~~~~~~~~~~-~~~p~gg~fl~~~l~----------~~~~~~Ll~~~~V~v~~~~--------Ri~~~~~~~~~i~~~~ 412 (423)
T PLN02397 352 LEARGSPGDWS-HITKQIGMFSFTGLN----------KEQVDRMTKEYHIYMTRDG--------RISMAGLSSKNVPYLA 412 (423)
T ss_pred HHhcCCCCCCC-cccCCceEEEecCCC----------HHHHHHHHHhCCEEECCCC--------eEEEeeCCHHHHHHHH
Confidence 99872 154 467999999998763 3588899999999997532 99998 6999999999
Q ss_pred HHHHHHHH
Q 042445 233 GRMKAFYD 240 (246)
Q Consensus 233 ~~l~~~~~ 240 (246)
++|.++++
T Consensus 413 ~~i~~~~~ 420 (423)
T PLN02397 413 DAIHAVVT 420 (423)
T ss_pred HHHHHHHh
Confidence 99999975
No 78
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-34 Score=237.49 Aligned_cols=204 Identities=17% Similarity=0.243 Sum_probs=173.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||..++.++++++++.+.+ +.++|+||+|.+|+- ..++..+...+|++++.||||+||++|+|+||+
T Consensus 150 ~i~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~----~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ 224 (356)
T COG0079 150 FLCNPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIEFSP----ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYA 224 (356)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhcCC----chhhhhccCCCCEEEEEecHHhhhcchhceeec
Confidence 999999999999999999999999998 999999999999984 222222335567999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
+++. ++++.+.+....| ++|.+++.++.+++. +.+++++..+..++.++++.+.|+.++ +. .+.|+.
T Consensus 225 ia~~--------~~i~~l~~vr~p~-~v~~~a~~aa~aal~--~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~-~v~pS~ 291 (356)
T COG0079 225 IANP--------ELIAALNKVRPPF-NVSSPALAAAIAALR--DADYLEESVERIREERERLYAALKALG-LF-GVFPSQ 291 (356)
T ss_pred cCCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHHHHHHhCC-CC-eecCCC
Confidence 9998 9999999998887 899999999999999 458999999999999999999999986 54 257888
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC-CCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-LKDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-~~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
++|++++++.. . ...+.+.|.++||.++.....+ .++++|++++..+++ ++.++.|.++++.
T Consensus 292 aNFvlv~~~~~------~-~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~een-~~ll~AL~~~~~~ 354 (356)
T COG0079 292 ANFVLVRVPDA------E-AAALAEALLKKGILVRDCSSVGLLPGYLRITVGTPEEN-DRLLAALREVLKG 354 (356)
T ss_pred CcEEEEECCCc------c-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCHHHH-HHHHHHHHHHHhc
Confidence 99999988741 2 4456777888999999986533 378999999965555 8888888877653
No 79
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=5.1e-34 Score=240.43 Aligned_cols=198 Identities=20% Similarity=0.249 Sum_probs=165.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++++|+++|++ +++||+||+|.++.+++. ....+...+++++++||||.|++||+|+||+
T Consensus 159 ~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~---~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~ 234 (357)
T PRK14809 159 YLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPS---AVALVEERDDVAVLRTFSKAYGLAGLRLGYA 234 (357)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCch---hHHHHhhCCCEEEEecchhHhcCcchhheee
Confidence 888999999999999999999999875 789999999999886432 2223344568999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ ++|++.|.++..++. .+.++++.++.++++++.+.+.|+.. ..|.+
T Consensus 235 ~~~~--------~~~~~~~~~~~~~-~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~ 297 (357)
T PRK14809 235 VVPE--------EWADAYARVNTPF-AASELACRAGLAALD--DDEHVERTVETARWAREYIREELDAP------TWESA 297 (357)
T ss_pred ecCH--------HHHHHHHHhCCCC-CCCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHhcCc------cCCCC
Confidence 9998 8999888765433 789999999999997 36788899999999999999988653 13578
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
|+|+|++++ ++.++. +.+.++||.+.||..|+.++++|++++ +++++++++++|.++++
T Consensus 298 g~f~~~~~~--------~~~~~~-~~l~~~gv~v~~g~~f~~~~~iRls~~-~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 298 GNFVLAEVG--------DASAVA-EAAQERGVIVRDCTSFGLPECIRITCG-TREETERAVEVLNEVLA 356 (357)
T ss_pred CCEEEEECC--------CHHHHH-HHHHHCCEEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhc
Confidence 999998774 245555 457789999999999987899999987 56889999999998875
No 80
>PRK06836 aspartate aminotransferase; Provisional
Probab=100.00 E-value=2.1e-33 Score=239.56 Aligned_cols=217 Identities=19% Similarity=0.330 Sum_probs=171.4
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHH------cCCEEEEccccCCcccCCCCCccccccCCcccE
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKK------LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPL 71 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~------~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 71 (246)
+.+++.++++ ++++||||||.++|.+++++|+++|++ ||++||+||+|.++.+++....++. ...+++
T Consensus 159 ~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~ 236 (394)
T PRK06836 159 DALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIF--KYYDNS 236 (394)
T ss_pred HHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChH--HccCcE
Confidence 3444444433 778999999999999999999999999 8999999999999988754333322 224589
Q ss_pred EEEcccccccccCCceEEEEEeeCCCCCcchhhHHH------HHHHHhhh--cCCCCchHHHHHHHHHhhchHHHHHHHH
Q 042445 72 LTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVD------SIKIFLNI--SSDPATFIQGAVPQILEKTEEEFFSKII 143 (246)
Q Consensus 72 i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~------~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 143 (246)
++++||||.|++||+|+||+++++ ++.+ .+...... ..+++++.|.++..++.+. ..+
T Consensus 237 i~~~S~SK~~~~pGlRiG~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~------~~~ 302 (394)
T PRK06836 237 IVVYSFSKSLSLPGERIGYIAVNP--------EMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDAT------VDV 302 (394)
T ss_pred EEEecchhhccCcceeeEEEecCH--------HHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCCh------HHH
Confidence 999999999999999999999987 4432 22111111 1267888999999999852 125
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec
Q 042445 144 DILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV 223 (246)
Q Consensus 144 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~ 223 (246)
+.++++++.+.+.|+++ |+. +..|++|+|+|++++.. ++.+++ +.+.++||.+.||..|+.++++||+++.
T Consensus 303 ~~~~~~r~~l~~~L~~~-g~~-~~~~~gg~~~~~~~~~~------~~~~~~-~~l~~~gv~v~~g~~f~~~~~iRi~~~~ 373 (394)
T PRK06836 303 SIYKRNRDLLYDGLTEL-GFE-CVKPQGAFYLFPKSPEE------DDVAFC-EKAKKHNLLLVPGSGFGCPGYFRLSYCV 373 (394)
T ss_pred HHHHHHHHHHHHHHHhC-CCE-eecCCceEEEEEeCCCC------CHHHHH-HHHHhCCEEEECchhcCCCCeEEEEecC
Confidence 66888999999999887 665 57889999999987642 355554 6678899999999999878999999998
Q ss_pred ChHHHHHHHHHHHHHHHHHh
Q 042445 224 EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 224 ~~~~l~~~~~~l~~~~~~~~ 243 (246)
+++++++++++|.+++++++
T Consensus 374 ~~~~~~~~i~~l~~~l~~~~ 393 (394)
T PRK06836 374 DTETIERSLPAFEKLAKEYK 393 (394)
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 81
>PRK06225 aspartate aminotransferase; Provisional
Probab=100.00 E-value=3.4e-33 Score=237.30 Aligned_cols=215 Identities=15% Similarity=0.198 Sum_probs=173.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||.++|.+++++|+++|+++|+++|+||+|.++..+. .+...+. .++++++.||||.||++|+|+||+
T Consensus 162 ~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~---~~~~~~~-~~~~i~~~s~SK~~g~~G~RiG~i 237 (380)
T PRK06225 162 YLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH---TLAAEYA-PEHTVTSYSFSKIFGMAGLRIGAV 237 (380)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC---CchhhcC-CCCEEEEeechhhcCCccceeEEE
Confidence 678999999999999999999999999999999999998876432 1222222 357899999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+........+.|.+.|.++..++.. .+.+.++.++.++++++.+.+.|++++++.....|.+
T Consensus 238 ~~~~--------~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 308 (380)
T PRK06225 238 VATP--------DLIEVVKSIVINDLGTNVIAQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSH 308 (380)
T ss_pred ecCH--------HHHHHHHHHHhcccCCCHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCC
Confidence 9988 888888776433447789999999888874 3577888888888999999999998766543345678
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeecChHHHHHHHHHHHHHHHHHhh
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~ 244 (246)
|+|+|++++.... +..++ ...|.++||.+.||..|+. .+++|++++.+++++++++++|.++++++++
T Consensus 309 g~~~~~~~~~~~~----~~~~l-~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 309 GNMMVIDISEAGI----DPEDL-VEYLLERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred CeEEEEEcccccC----CHHHH-HHHHHHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8999998864321 34555 4445689999999987653 5799999998899999999999999987765
No 82
>PTZ00376 aspartate aminotransferase; Provisional
Probab=100.00 E-value=7.6e-34 Score=242.87 Aligned_cols=202 Identities=17% Similarity=0.171 Sum_probs=160.6
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCccccccC-CcccEEEEcccccccccCCceE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVFG-SIVPLLTLGSISKRGIVPGLRL 88 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~ 88 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.+++. .+.++..+. ..+++|+++||||.|+++|+|+
T Consensus 181 ~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRv 260 (404)
T PTZ00376 181 LHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERI 260 (404)
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccccccc
Confidence 6799999999999999999999999999999999999999998641 222333332 2358999999999999999999
Q ss_pred EEEE---eeCCCCCcchhhHHHHH----HHH-hhhcCCCCchHHHHHHHHHhhch--H---HHHHHHHHHHHHHHHHHHH
Q 042445 89 GWLV---TSDPNGILQDSGIVDSI----KIF-LNISSDPATFIQGAVPQILEKTE--E---EFFSKIIDILRETADKCCD 155 (246)
Q Consensus 89 G~i~---~~~~~~~~~~~~~~~~l----~~~-~~~~~~~~~~~q~~~~~~l~~~~--~---~~~~~~~~~~~~~~~~l~~ 155 (246)
||++ +++ ++++.+ ... ...+.+.+.+.|.++..++.++. + .++++.++.++++++.+.+
T Consensus 261 G~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~ 332 (404)
T PTZ00376 261 GALHIVCANK--------EEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYD 332 (404)
T ss_pred ceEEEEeCCH--------HHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9984 454 544443 333 23344568899999999998643 2 3466777899999999999
Q ss_pred HhhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHH
Q 042445 156 RLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENG 231 (246)
Q Consensus 156 ~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~ 231 (246)
.|++++ ++. +..|+||+|+|+++ +.+++..+++++||.+.||. |+|++ .+.++++++
T Consensus 333 ~L~~~~~~~~~~-~~~p~gg~f~~~~~----------~~~~~~~L~~~~~v~v~p~~--------Ris~~~~~~~~~~~~ 393 (404)
T PTZ00376 333 ELKALGSPGDWE-HIINQIGMFSFTGL----------TKEQVERLIEKYHIYLLDNG--------RISVAGLTSKNVDYV 393 (404)
T ss_pred HHHhcCCCCccc-ccccCceEEEecCC----------CHHHHHHHHHhCCEeecCCC--------eEEEeccCHHhHHHH
Confidence 999862 233 45789999999866 34677888888899999972 99998 699999999
Q ss_pred HHHHHHHHH
Q 042445 232 LGRMKAFYD 240 (246)
Q Consensus 232 ~~~l~~~~~ 240 (246)
+++|.+++.
T Consensus 394 ~~~l~~~~~ 402 (404)
T PTZ00376 394 AEAIHDVVR 402 (404)
T ss_pred HHHHHHHHh
Confidence 999999875
No 83
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=1.5e-33 Score=238.80 Aligned_cols=201 Identities=19% Similarity=0.248 Sum_probs=159.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++++++++| +|++||+||+|.++.+.. .+..+...+++|+++||||.||+||+|+||+
T Consensus 173 ~l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~----~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~ 246 (374)
T PRK02610 173 FVVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTT----LVGELAQHPNWVILRTFSKAFRLAAHRVGYA 246 (374)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCccc----hHHHHhcCCCEEEEEecchhccCcccceeee
Confidence 7889999999999999999999876 499999999999886421 2223334457899999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ ++|.+.|.++..++.+ .+.+.+..++.+++ ++.+.+.|++++++.. .|++
T Consensus 247 v~~~--------~l~~~l~~~~~~~-~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~-r~~l~~~L~~~~~~~~--~p~~ 313 (374)
T PRK02610 247 IGHP--------ELIAVLEKVRLPY-NLPSFSQLAAQLALEH-RQELLAAIPEILQE-RDRLYQALQELPQLRV--WPSA 313 (374)
T ss_pred ecCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHhcC-HHHHHHHHHHHHHH-HHHHHHHHHhCCCcEe--CCCc
Confidence 9988 8999888775433 7899999999999974 35667766666554 6778889988877652 5899
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
|+|+|++++... ++.++ .+.+.++||.+.++ ++++||+++.+ +++++++++|.+++++++
T Consensus 314 g~f~~~~l~~~~-----~~~~~-~~~l~~~gi~v~~~-----~~~lRls~~~~-~~~~~~l~~l~~~l~~~~ 373 (374)
T PRK02610 314 ANFLYLRLSQDA-----ALAAL-HQALKAQGTLVRHT-----GGGLRITIGTP-EENQRTLERLQAALTQLE 373 (374)
T ss_pred ceEEEEeCCCCC-----CHHHH-HHHHHHCCEEEEeC-----CCeEEEeCCCH-HHHHHHHHHHHHHHhhcC
Confidence 999999887532 24444 55578899999863 57899999864 567999999999987653
No 84
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=100.00 E-value=4.3e-34 Score=241.08 Aligned_cols=212 Identities=14% Similarity=0.192 Sum_probs=167.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ +++|||||||.+++.+++++|+++|++++ ++|+||+|.++.+.+.....+..+...+++|+++||
T Consensus 142 ~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~Sf 220 (366)
T PRK01533 142 DEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTF 220 (366)
T ss_pred HHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCc
Confidence 3455555433 88899999999999999999999998866 577799999888654322333444556789999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
||.|++||+|+||+++++ ++++.+......+ ++|.++|.++..+|. ...+.++.++..+++++.+.+.+
T Consensus 221 SK~~~l~GlRiG~~i~~~--------~~~~~l~~~~~~~-~~~~~~q~aa~~~l~--~~~~~~~~~~~~~~~r~~~~~~l 289 (366)
T PRK01533 221 SKAYGLASFRVGYAVGHE--------ELIEKLNVVRLPF-NVSSLAQKAATIAFG--DDEFIEEIVRVNTEGLRQYESFC 289 (366)
T ss_pred hHHhcChHHHHhHHhCCH--------HHHHHHHHhcCCC-CcCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 9999998775444 899999999999997 46788888888899999999988
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
+.+ |+. + .+.+|+|+|++++. +.+ +.+.|.++||.|++ | ++++|++++ +.++.+..++.|++
T Consensus 290 ~~~-g~~-~-~~~~~nf~~~~~~~--------~~~-~~~~l~~~GI~Vr~---~--~~~iRis~~-~~~~~~~l~~al~~ 351 (366)
T PRK01533 290 KEN-EIP-F-YQSQTNFIFLPVEN--------GGE-IYEACAHAGFIIRP---F--PNGVRITVG-TREQNEGVISVLQQ 351 (366)
T ss_pred HhC-CCc-c-CCCcCcEEEEeCCC--------HHH-HHHHHHHCCcEEcc---C--CCceEEeCC-CHHHHHHHHHHHHH
Confidence 887 665 3 34568899988752 334 45667789999998 3 689999998 45567788888887
Q ss_pred HHHHHh
Q 042445 238 FYDRHA 243 (246)
Q Consensus 238 ~~~~~~ 243 (246)
.++..+
T Consensus 352 ~~~~~~ 357 (366)
T PRK01533 352 HFENKK 357 (366)
T ss_pred HHHhcc
Confidence 776544
No 85
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=100.00 E-value=1.5e-33 Score=240.65 Aligned_cols=205 Identities=20% Similarity=0.201 Sum_probs=161.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC-CCCCccccccCC-cccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG-NTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G 89 (246)
+.++||||||.++|.+++++|+++|++||++||+||+|.++.++ +..+.++..+.. .+++|+++||||.|+++|+|+|
T Consensus 177 i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG 256 (396)
T PRK09257 177 LHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVG 256 (396)
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccce
Confidence 66999999999999999999999999999999999999999875 222334444432 4589999999999999999999
Q ss_pred EEEe--eCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445 90 WLVT--SDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDRLKEIP 161 (246)
Q Consensus 90 ~i~~--~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~ 161 (246)
|+++ ++. .... +++..+.... ..+.+++.+.|.++..++.++. ++++++.++.++++++.+.+.|++..
T Consensus 257 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~ 333 (396)
T PRK09257 257 ALSVVAEDA-EEAD--RVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKG 333 (396)
T ss_pred eEEEEeCCH-HHHH--HHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9984 321 0000 2333443332 2344678999999999998653 57788899999999999999999852
Q ss_pred ---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHHHHHHH
Q 042445 162 ---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGLGRMKA 237 (246)
Q Consensus 162 ---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~~~l~~ 237 (246)
++. +..|+||+|+|++++ .+++.++++++||.+.|. + ||+++ .+++.+++++++|.+
T Consensus 334 ~~~~~~-~~~p~gg~~~w~~l~----------~~~~~~l~~~~~V~~~p~------~--ri~~~~~~~~~i~~~~~~i~~ 394 (396)
T PRK09257 334 PSRDFD-FIARQRGMFSYSGLT----------PEQVDRLREEFGVYAVGS------G--RINVAGLNESNIDYVAEAIAA 394 (396)
T ss_pred CCCCcc-cccccceEEEecCCC----------HHHHHHHHHcCCEEEcCC------C--eEEEeeCCHHHHHHHHHHHHh
Confidence 344 578999999998763 356688889999999883 2 99998 599999999999987
Q ss_pred H
Q 042445 238 F 238 (246)
Q Consensus 238 ~ 238 (246)
+
T Consensus 395 ~ 395 (396)
T PRK09257 395 V 395 (396)
T ss_pred h
Confidence 5
No 86
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=5.6e-33 Score=235.59 Aligned_cols=208 Identities=19% Similarity=0.239 Sum_probs=162.4
Q ss_pred hhhhhhh-ccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDI-TRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~-~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
|.+++.+ .++ +++|||||||.+++.+++++|++.+ +++|+||+|.++.+.+. ....+...+++++++|
T Consensus 165 ~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~~---~~~~~~~~~~viv~~S 237 (380)
T PLN03026 165 PRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQES---RMKWVKKYDNLIVLRT 237 (380)
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCcc---hHHHHHhCCCEEEEec
Confidence 3455555 332 8899999999999999888888653 89999999999876532 1222344578999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
|||.||++|+|+||+++++ ++++.+......+ +++.++|.++.++|.+ ..++++.++.++++++.+.+.
T Consensus 238 fSK~~glaGlRiGy~~~~~--------~~i~~l~~~~~~~-~~~~~~q~aa~~aL~~--~~~~~~~~~~~~~~r~~l~~~ 306 (380)
T PLN03026 238 FSKRAGLAGLRVGYGAFPL--------SIIEYLWRAKQPY-NVSVAAEVAACAALSN--PKYLEDVKNALVEERERLFGL 306 (380)
T ss_pred chHhhcCccccceeeecCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999988776554 7899999999999973 578899999999999999999
Q ss_pred hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHH
Q 042445 157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMK 236 (246)
Q Consensus 157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~ 236 (246)
|++++++. ..|++|+|+|++++... ++.++ .+.|.++||.++++..++.++++|+|++. .++.+..++.|+
T Consensus 307 L~~~~~~~--~~p~~~~f~~~~~~~~~-----~~~~~-~~~l~~~gI~v~~~~~~~~~~~lRis~~~-~~~~~~l~~al~ 377 (380)
T PLN03026 307 LKEVPFLE--PYPSDANFILCRVTSGR-----DAKKL-KEDLAKMGVMVRHYNSKELKGYIRVSVGK-PEHTDALMEALK 377 (380)
T ss_pred HHHCCCCe--ECCCCCeEEEEECCCCC-----CHHHH-HHHHHHCCeEEEECCCCCCCCEEEEecCC-HHHHHHHHHHHH
Confidence 99885544 37889999999876421 24555 44555899999998765567899999994 334444444443
No 87
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=1e-33 Score=237.83 Aligned_cols=200 Identities=16% Similarity=0.222 Sum_probs=161.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.+++++|++.|++ +.++|+||+|.+|.... .....+...++++++.||||.||++|+|+||+
T Consensus 150 ~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~---s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~ 225 (351)
T PRK01688 150 YVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQA---SLAGWLAEYPHLVILRTLSKAFALAGLRCGFT 225 (351)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCC---ChHHHHhhCCCEEEEecchHhhcCHHHHHhHH
Confidence 889999999999999999999999986 68999999999987331 12222344568999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ ++|.+.|.++..+|.+....++++.++.++++++.+.+.|++++++. .+.|++
T Consensus 226 i~~~--------~~i~~l~~~~~~~-~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~ps~ 295 (351)
T PRK01688 226 LANE--------EVINLLLKVIAPY-PLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVE-QVFDSE 295 (351)
T ss_pred hCCH--------HHHHHHHhccCCC-CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-eECCCC
Confidence 9988 8999888776555 78888888888888754456788888899999999999999887764 246788
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc-CCCCeEEEEeecChHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV-GLKDWLRITFAVEPSALENGLGRM 235 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f-~~~~~iRls~~~~~~~l~~~~~~l 235 (246)
++|+|++++. +.++ .+.|.++||.|+++..+ +.++++|+|++ ++++.+..++.|
T Consensus 296 ~nfi~~~~~~--------~~~l-~~~L~~~gi~vr~~~~~~~~~~~iRis~~-~~~e~~~l~~al 350 (351)
T PRK01688 296 TNYILARFTA--------SSAV-FKSLWDQGIILRDQNKQPGLSNCLRITIG-TREECQRVIDAL 350 (351)
T ss_pred CcEEEEEcCC--------HHHH-HHHHHHCCeEEEECCCcCCCCCeEEEeCC-CHHHHHHHHHhh
Confidence 9999988752 4444 44566889999987655 44889999999 456667776655
No 88
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=3.9e-33 Score=236.09 Aligned_cols=211 Identities=18% Similarity=0.263 Sum_probs=161.9
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEccc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSI 77 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~ 77 (246)
.+++.++++ +++|||||||.+++.+++++|+++|++ +.++|+||+|.++.+++.....+..+. ..+++|+++||
T Consensus 151 ~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~Sf 229 (371)
T PRK05166 151 ALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTF 229 (371)
T ss_pred HHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeec
Confidence 444444433 789999999999999999999999874 889999999999996543222222232 24579999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
||.|+++|+|+||+++++. ++++.+......+ ++|.+.|.++..++.. ..++++.++.++++++.+.+.|
T Consensus 230 SK~~~l~GlRiG~~i~~~~-------~l~~~~~~~~~~~-~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L 299 (371)
T PRK05166 230 SKAYGLAGLRVGYGLVSDP-------ELVGLLDRVRTPF-NVNGAAQAAALAALDD--EEHLAKGVALALAERERLKKEL 299 (371)
T ss_pred hHhhhcchhheeeeecCCH-------HHHHHHHHhccCC-CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887542 7778777655433 7899999888888873 5688888899999999999999
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecC--hHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE--PSALENGLGRM 235 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~--~~~l~~~~~~l 235 (246)
++. ++. + .|.+|+|+|++++. ++.++.. .+.++||.+.||..++.++++|++++.+ .+.+.++++.+
T Consensus 300 ~~~-g~~-~-~p~~g~fl~~~~~~-------~~~~l~~-~l~~~gi~v~p~~~~~~~~~iRi~~~~~~~~~~l~~~l~~i 368 (371)
T PRK05166 300 AEM-GYR-I-APSRANFLFFDARR-------PASAVAE-ALLRQGVIVKPWKQPGFETFIRVSIGSPEENDHFVAALDKV 368 (371)
T ss_pred HHC-cCe-e-CCCcCCEEEEeCCC-------CHHHHHH-HHHHCCeEEecCCCCCCCCeEEEEcCCHHHHHHHHHHHHHH
Confidence 987 665 3 56778999987653 2555554 5557899999998776689999999962 35555555544
No 89
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=100.00 E-value=1.5e-32 Score=232.40 Aligned_cols=217 Identities=18% Similarity=0.216 Sum_probs=173.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ +++|||||||.+++.+++.++++.|+ +|+++|+||+|.++.+++....++..++..+++++++||
T Consensus 145 ~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 223 (367)
T PRK02731 145 DAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTF 223 (367)
T ss_pred HHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeee
Confidence 3445555433 77899999999999999999998875 699999999999988765333344434445689999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
||.||++|+|+||+++++ ++++.+......+ +.|.++|.++..+++ ...++++.++.++++++.+.+.|
T Consensus 224 SK~~g~~G~RiG~l~~~~--------~~~~~l~~~~~~~-~~~~~~~~~a~~~l~--~~~~~~~~~~~~~~~~~~l~~~L 292 (367)
T PRK02731 224 SKAYGLAGLRVGYGIAPP--------EIIDALNRVRQPF-NVNSLALAAAVAALD--DDAFVEKSRALNAEGMAWLTEFL 292 (367)
T ss_pred hHhhcCcccceeeeeCCH--------HHHHHHHHccCCC-CCCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 8999888765443 678999999999997 35678888999999999999999
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
++. |+.. .|.+|+|+|++++... ++.++ .+.|.++||.+.|+..|+.++++|++++ +.++++..++.|++
T Consensus 293 ~~~-g~~~--~~~~g~~~~i~~~~~~-----~~~~~-~~~L~~~gI~v~~~~~~~~~~~iRis~~-~~~e~~~l~~aL~~ 362 (367)
T PRK02731 293 AEL-GLEY--IPSVGNFILVDFDDGK-----DAAEA-YQALLKRGVIVRPVAGYGLPNALRITIG-TEEENRRFLAALKE 362 (367)
T ss_pred HHC-CCcc--CCCCceEEEEECCCCC-----CHHHH-HHHHHHCCEEEEeCCCCCCCCeEEEecC-CHHHHHHHHHHHHH
Confidence 987 6663 3567899999885432 34455 4556689999999988866789999998 55667888888887
Q ss_pred HHH
Q 042445 238 FYD 240 (246)
Q Consensus 238 ~~~ 240 (246)
+++
T Consensus 363 ~~~ 365 (367)
T PRK02731 363 FLA 365 (367)
T ss_pred HHh
Confidence 764
No 90
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=100.00 E-value=3e-32 Score=230.47 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=167.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++.+|+++|+ +|++||+||+|.++.+++. ..++.. ..+++++++||||.|++||+|+||+
T Consensus 160 ~l~~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~~~~--~~~~~i~~~SfSK~~g~~GlRiG~~ 235 (369)
T PRK08153 160 YLANPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA-APPIDT--DDPNVIRMRTFSKAYGLAGARVGYA 235 (369)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc-chhhhh--cCCCEEEEecchHhccCcchheeee
Confidence 77899999999999999999999887 4999999999999887653 223222 2458999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ ++|++.|.++..+|. +..++++.++.++++++.+.+.|++. |+.. .|.+
T Consensus 236 v~~~--------~~~~~l~~~~~~~-~~s~~~q~~~~~~l~--~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~--~p~~ 301 (369)
T PRK08153 236 IGAP--------GTIKAFDKVRNHF-GMNRIAQAAALAALK--DQAYLAEVVGKIAAARDRIAAIARAN-GLTP--LPSA 301 (369)
T ss_pred ecCH--------HHHHHHHHhhcCC-CCCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc--CCCc
Confidence 9988 8999888765544 789999999999997 46788899999999999999999887 5642 5788
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEe-cCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL-PGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
++|+|++++... .....+.+.+.++||.++ |+.. ..++++|++++ ++++++..++.|.+++...+
T Consensus 302 ~~f~~~~~~~~~-----~~a~~l~~~l~~~Gi~v~~p~~~-~~~~~iRis~~-~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 302 TNFVAIDCGRDG-----AFARAVLDGLIARDIFVRMPGVA-PLDRCIRVSCG-PDEELDLFAEALPEALEAAR 367 (369)
T ss_pred CcEEEEECCCCc-----ccHHHHHHHHHHCCeEEeeCCCC-CCCCeEEEecC-CHHHHHHHHHHHHHHHHHhh
Confidence 999998875321 133444555668899995 6542 23679999999 67788999999998886544
No 91
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=100.00 E-value=1.7e-32 Score=228.73 Aligned_cols=207 Identities=12% Similarity=0.104 Sum_probs=165.2
Q ss_pred hhhhhhhccc---cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccc-cCCcccEEEEccc
Q 042445 2 ELINQDITRE---FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGV-FGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~---~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~~~i~~~s~ 77 (246)
|.+++.+... ++++||||||.+++.+++++|+++|+++|+++|+||+|.++.... ++.. .+..+++++++||
T Consensus 117 ~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~----~~~~~~~~~~~~i~~~S~ 192 (330)
T TIGR01140 117 DRLPAALEELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDA----SLAPQAARFPGLVVLRSL 192 (330)
T ss_pred HHHHhhcccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCcc----chhhHhccCCCEEEEEec
Confidence 4455555332 789999999999999999999999999999999999999887542 2222 2335689999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
||.||++|+|+||+++++ ++++.+......+ ++|+++|.++..++. ...+.++.++.++++++.+.+.|
T Consensus 193 SK~~g~~G~R~G~i~~~~--------~~~~~l~~~~~~~-~~s~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~L 261 (330)
T TIGR01140 193 TKFFGLAGLRLGFVVAHP--------ALLARLREALGPW-TVNGPARAAGRAALA--DTAWQAATRARLAAERARLAALL 261 (330)
T ss_pred chhhcCchhhhhheeCCH--------HHHHHHHhcCCCC-CchHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 8889888775444 678999999999998 34567788899999999999999
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRM 235 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l 235 (246)
++++.+.. .|.+|+|+|++++. ..++.. .|.++||.+.||..|+. ++++|++++...++ +.++.+|
T Consensus 262 ~~~~~~~~--~~~~~~f~~~~~~~--------~~~l~~-~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~~~-~~~~~~l 329 (330)
T TIGR01140 262 ARLGGLEV--VGGTALFLLVRTPD--------AAALHE-ALARRGILIRDFDNFPGLDPRYLRFALPTDEEN-DRLEEAL 329 (330)
T ss_pred HhCCCceE--CCCCCeEEEEEcCC--------HHHHHH-HHHHCCEEEEECCCCCCCCCCEEEEEecCHHHH-HHHHHhh
Confidence 99865542 56689999987752 455554 55578999999999863 68999999975444 5555443
No 92
>PRK07908 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=225.10 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=158.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++. ++|+ ++.++|+||+|.++..+ ...++... ..+++++++||||.|+++|+|+||+
T Consensus 144 ~l~np~NPTG~~~~~~~l~---~l~~-~~~~iIvDe~y~~~~~~--~~~~l~~~-~~~~~i~i~S~SK~~~l~GlRiG~~ 216 (349)
T PRK07908 144 VIGNPTNPTSVLHPAEQLL---ALRR-PGRILVVDEAFADAVPG--EPESLAGD-DLPGVLVLRSLTKTWSLAGLRVGYA 216 (349)
T ss_pred EEcCCCCCCCCCcCHHHHH---HHHh-cCCEEEEECcchhhccC--Cccccccc-cCCCEEEEeecccccCCccceeeee
Confidence 7899999999999977554 4555 57889999999987543 23344333 3357999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ .++++.+.++..++......++++.++.++++++.+.+.|+++ ++. +..|++
T Consensus 217 ~~~~--------~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~-~~~p~~ 285 (349)
T PRK07908 217 LGAP--------DVLARLTRGRAHW-PVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GAR-VVDPAA 285 (349)
T ss_pred ecCH--------HHHHHHHhcCCCC-CccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcE-eccCCC
Confidence 9988 8999888765443 6788889888888874446788899999999999999999987 666 567789
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
|+|+|++++. .+.+.+.++++||.+.||..|+. ++++|+|++ ++++.+++++.|++.+
T Consensus 286 g~~~~~~~~~---------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~-~~~~~~~l~~al~~~~ 345 (349)
T PRK07908 286 APFVLVRVPD---------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR-PRAEVPVLVQALAEIL 345 (349)
T ss_pred ceEEEEECCc---------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC-CCccHHHHHHHHHHHH
Confidence 9999998762 34567778899999999998854 789999997 4445666666666554
No 93
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.98 E-value=1.2e-31 Score=225.95 Aligned_cols=205 Identities=21% Similarity=0.269 Sum_probs=160.9
Q ss_pred hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
+.+++.++. + ++++||||||.++|.+++++|+++| +.++|+||+|.++.+.. ..+ .+...+++++++|
T Consensus 143 ~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~--~~~--~~~~~~~vi~~~S 215 (356)
T PRK04870 143 PAMLAAIAEHRPALVFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAGDS--WLP--RLARFPNLLVMRT 215 (356)
T ss_pred HHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcCcc--hHH--HHhhCCCEEEEec
Confidence 445555532 2 7889999999999999999999988 78899999999876432 111 2334568999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
||| +++||+|+||+++++ ++++.+......+ +++.+.|.++..++++ ..++++.++.++++++.+.+.
T Consensus 216 ~SK-~~~~GlRiG~~i~~~--------~~i~~~~~~~~~~-~~~~~~q~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~ 283 (356)
T PRK04870 216 VSK-LGLAGLRLGYLAGHP--------AWIAELDKVRPPY-NVNVLTQATALFALEH--VDVLDAQAAQLRAERTRLAAA 283 (356)
T ss_pred chh-hhhHHHhhhhhhCCH--------HHHHHHHHccCCC-cCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHH
Confidence 999 799999999999998 8999888765444 7888999998888873 346788888999999999999
Q ss_pred hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHH
Q 042445 157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGR 234 (246)
Q Consensus 157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~ 234 (246)
|++++++.. .|.+|+|+|++++. +.+ +.+.|+++||.|+||..|+. ++++|++++. .++.+..++.
T Consensus 284 L~~~~~~~~--~~~~~~~~~~~~~~--------~~~-~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~-~~~~~~l~~a 351 (356)
T PRK04870 284 LAALPGVTV--FPSAANFILVRVPD--------AAA-VFDGLKTRGVLVKNLSGMHPLLANCLRVTVGT-PEENAQFLAA 351 (356)
T ss_pred HHhCCCcEE--CCCCCeEEEEECCC--------HHH-HHHHHHHCCEEEEECCCCCCCCCCeEEEeCCC-HHHHHHHHHH
Confidence 998878753 56778899988761 444 45678899999999988854 7899999994 4445555555
Q ss_pred HHH
Q 042445 235 MKA 237 (246)
Q Consensus 235 l~~ 237 (246)
|.+
T Consensus 352 l~~ 354 (356)
T PRK04870 352 LKA 354 (356)
T ss_pred HHH
Confidence 554
No 94
>PRK08354 putative aminotransferase; Provisional
Probab=99.98 E-value=8e-31 Score=216.92 Aligned_cols=185 Identities=14% Similarity=0.202 Sum_probs=135.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.. . ..+++++++||||.|++||+|+||+
T Consensus 122 i~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~------~-~~~~vi~~~S~SK~~~l~GlRiG~~ 194 (311)
T PRK08354 122 FFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES------P-EGENIIKLRTFTKSYGLPGIRVGYV 194 (311)
T ss_pred EEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc------c-CCCcEEEEeccHhhcCCccceeeee
Confidence 88999999999999999999999999999999999999999886421 1 1468999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++.. + .++.....+ .++...+.++..++.. ...++.+.++.++++++.+.+.+ ...|++
T Consensus 195 v~~~--------~---~l~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l--------~~~~~~ 253 (311)
T PRK08354 195 KGFE--------E---AFRSVRMPW-SIGSTGYAFLEFLIED-DFEHLRKTMPLIWREKERFEKAL--------YVKSDA 253 (311)
T ss_pred eehH--------H---HHHHcCCCc-cCCHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhc--------CCCCCC
Confidence 9832 3 344443333 6677778887777763 23455555665565555544332 124555
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecC--hHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE--PSALENGLGR 234 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~--~~~l~~~~~~ 234 (246)
++++ ++++ ++.+++ +.+.++||.+.||..|+.++++|++++.+ .+.+.++++.
T Consensus 254 ~~~~-~~~~--------~~~~~~-~~l~~~gv~v~~g~~f~~~~~iRi~~~~~~~~~~l~~al~~ 308 (311)
T PRK08354 254 NFFI-KDVG--------DAEKFV-EFLKRNGILVRDCTSFGLPGYIRFSVRDREENEKLIRALRE 308 (311)
T ss_pred cEEE-EECC--------CHHHHH-HHHHHCCeEEEecccCCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5554 5543 244554 45678899999999997789999999952 3455555544
No 95
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=1e-30 Score=220.09 Aligned_cols=202 Identities=17% Similarity=0.256 Sum_probs=158.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++++|++.++ |+++|+||+|.++. +....+ .....+++++++||||.|+++|+|+||+
T Consensus 149 ~~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~~~--~~~~~~--~~~~~~~~i~~~S~SK~~~~~GlR~G~~ 222 (353)
T PRK05387 149 IFPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVDFG--GESAIP--LIDRYPNLLVVQTFSKSRSLAGLRVGFA 222 (353)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCcccccC--CcchHH--HHhhCCCEEEEEehhHhhcchhhhceee
Confidence 88999999999999999999988643 99999999998763 222212 2233468999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
++++ ++++.+...... ..+++.+.|.++..++. ...+.++.++.+.++++.+.+.|+++ ++. + .|
T Consensus 223 ~~~~--------~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~ 289 (353)
T PRK05387 223 IGHP--------ELIEALNRVKNSFNSYPLDRLAQAGAIAAIE--DEAYFEETRAKVIATRERLVEELEAL-GFE-V-LP 289 (353)
T ss_pred ecCH--------HHHHHHHHhhccCCCCCcCHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-E-CC
Confidence 9988 889988876532 23678999999999997 35677888889999999999999987 665 2 56
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
.+++|+|++++.. ++.++. +.|.++||.+.+......++++|++++ ++++++++++.|.+++.
T Consensus 290 ~~~~~~~~~~~~~------~~~~~~-~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 290 SKANFVFARHPSH------DAAELA-AKLRERGIIVRHFNKPRIDQFLRITIG-TDEEMEALVDALKEILA 352 (353)
T ss_pred CcCcEEEEECCCC------CHHHHH-HHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHHHhh
Confidence 7889999877632 245554 456788999986433333689999998 56788999999988764
No 96
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=4.2e-31 Score=222.36 Aligned_cols=200 Identities=13% Similarity=0.137 Sum_probs=156.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.+++++|++.|+ +++||+||+|.++.... .........+++++++||||.|+++|+|+||+
T Consensus 152 ~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~~~---s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~ 226 (354)
T PRK04635 152 FICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCPEY---SVADLLASYPNLVVLRTLSKAFALAGARCGFT 226 (354)
T ss_pred EEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhccCc---chHHHHhhCCCEEEEechHHHhhhhHHHHhhh
Confidence 88999999999999999999998876 49999999999886332 11111233468999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ +++.+.|.++.+++.+....++++..+.++++++.+.+.|++++++. +.+| +
T Consensus 227 i~~~--------~~~~~l~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~~-~ 295 (354)
T PRK04635 227 LANE--------ELIEILMRVIAPY-PVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAK-VLEG-N 295 (354)
T ss_pred hCCH--------HHHHHHHhhcCCC-CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCce-ECCC-C
Confidence 9988 8998887654433 67888898988998754456678888889999999999999886665 3444 5
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
|+|+|++++. ..+ +.+++.++||.++++..+..++++|+|++ ++++++..++.|++
T Consensus 296 g~f~~~~~~~--------~~~-~~~~l~~~gv~v~~~~~~~~~~~lRis~~-~~e~~~~l~~al~~ 351 (354)
T PRK04635 296 GNYVLAKFDD--------VDA-VFKALWDAGIVARAYKDPRLANCIRFSFS-NRAETDKLIGLIRN 351 (354)
T ss_pred CcEEEEECCC--------HHH-HHHHHHHCCEEEEECCCCCCCCeEEEEeC-CHHHHHHHHHHHHH
Confidence 7899987752 334 45678899999987654445789999998 55667777766653
No 97
>PLN02368 alanine transaminase
Probab=99.97 E-value=3.3e-31 Score=225.55 Aligned_cols=162 Identities=19% Similarity=0.249 Sum_probs=134.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC-CCcccccc----C----CcccEEEEccccccc-
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT-PFVSMGVF----G----SIVPLLTLGSISKRG- 81 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~----~----~~~~~i~~~s~sK~~- 81 (246)
+++|||||||.++|.+++++|+++|++||++||+||+|.++.|++. ++.++..+ + ..+++|+++||||.|
T Consensus 215 ~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~ 294 (407)
T PLN02368 215 VIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYW 294 (407)
T ss_pred EEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccc
Confidence 8999999999999999999999999999999999999999999763 34443322 1 245899999999998
Q ss_pred ccCCceEEEEEe---eCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch------HHHH---HHHHHHHHHH
Q 042445 82 IVPGLRLGWLVT---SDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE------EEFF---SKIIDILRET 149 (246)
Q Consensus 82 ~~~g~r~G~i~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~------~~~~---~~~~~~~~~~ 149 (246)
++||+|+||+++ +. ++++.+........++|.++|.++..+|.... +.+. ++..+.+++|
T Consensus 295 ~~~GlRiGy~i~~~~~~--------~li~~~~~~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r 366 (407)
T PLN02368 295 GECGQRGGYFEMTNIPP--------KTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRR 366 (407)
T ss_pred cCCccceEEEEEeCCCH--------HHHHHHHHHhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 899999999995 55 88888887644444789999999999997532 1233 5568899999
Q ss_pred HHHHHHHhhcCCCCccccCCCCceEEEEEeccc
Q 042445 150 ADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYS 182 (246)
Q Consensus 150 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~ 182 (246)
++.+.+.|++++|+. +..|+||||+|++++.+
T Consensus 367 r~~~~~~L~~~~g~~-~~~P~Gafy~~~~i~lp 398 (407)
T PLN02368 367 ARMMTDGFNSCKNVV-CNFTEGAMYSFPQIKLP 398 (407)
T ss_pred HHHHHHHHhCCCCeE-eCCCCeeeEeccCCCCC
Confidence 999999999998887 57899999999877643
No 98
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=2.9e-30 Score=217.05 Aligned_cols=206 Identities=21% Similarity=0.290 Sum_probs=153.3
Q ss_pred hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
+.+++.+++ + +++|||||||.+++.+++.+++ ++++.++|+||+|.++. +. ...+ .+...+++|+++|
T Consensus 138 ~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~---~~~~~~~ivDe~y~~~~-~~-~~~~--~~~~~~~vi~~~S 210 (351)
T PRK14807 138 GSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKII---EKSRGIVVVDEAYFEFY-GN-TIVD--VINEFENLIVLRT 210 (351)
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHH---HhCCCEEEEeCcchhhc-cc-chHH--HhhhCCCEEEEec
Confidence 345555543 2 7789999999999977766665 56678899999998874 32 2222 2234568999999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
|||.|++||+|+||+++++ ++++.+......+ +++++.|.++..++.+ .++++..+.++++++.+.+.
T Consensus 211 ~SK~~~~~GlRiG~~v~~~--------~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~ 278 (351)
T PRK14807 211 LSKAFGLAGLRVGYAVANE--------NILKYLNLVKSPY-NINSLSQVIALKVLRT---GVLKERVNYILNERERLIKE 278 (351)
T ss_pred chHhcccchhceeeeecCH--------HHHHHHHHccCCC-CcCHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 8999888765543 6899999999999984 35666777788899999999
Q ss_pred hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC-cCCCCeEEEEeecChHHHHHHHHHH
Q 042445 157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT-VGLKDWLRITFAVEPSALENGLGRM 235 (246)
Q Consensus 157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-f~~~~~iRls~~~~~~~l~~~~~~l 235 (246)
|++++|+. + .|.+|+|+|++++ +.+.+.+.|.++||.|.++.. ++.++++|++++.+ ++.+..++.|
T Consensus 279 l~~~~g~~-~-~~~~~~~~~i~~~---------~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~~~-~~~~~l~~~l 346 (351)
T PRK14807 279 LSKIPGIK-V-YPSKTNFILVKFK---------DADYVYQGLLERGILVRDFSKVEGLEGALRITVSSC-EANDYLINGL 346 (351)
T ss_pred HHhCCCcE-E-CcCCccEEEEEcC---------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcCCH-HHHHHHHHHH
Confidence 98877875 3 4667889998875 234456667788999998654 34478999999953 3344555555
Q ss_pred HHH
Q 042445 236 KAF 238 (246)
Q Consensus 236 ~~~ 238 (246)
+++
T Consensus 347 ~~~ 349 (351)
T PRK14807 347 KEL 349 (351)
T ss_pred HHh
Confidence 443
No 99
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=5.1e-30 Score=200.05 Aligned_cols=217 Identities=19% Similarity=0.283 Sum_probs=176.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+.+.|.||||.+++++++.+|-+++++||+.+|+|.+|+.- |.+--++- ..+...+|++.+-|+||. |+||.|+|.+
T Consensus 184 c~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~P-FP~iifsd-~~~~w~~NiilC~SLSK~-GLPG~R~GIi 260 (417)
T COG3977 184 CVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVP-FPGIIFSD-ATPLWNENIILCMSLSKL-GLPGSRCGII 260 (417)
T ss_pred EecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCC-CCceeccc-ccccCCCCEEEEeehhhc-CCCCcceeEE
Confidence 78899999999999999999999999999999999999841 22211111 122335689999999999 9999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHH--HHHHHHHHHHHHHHHHHHHhhc-CCCCcc-c
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEE--FFSKIIDILRETADKCCDRLKE-IPCITC-P 166 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~L~~-~~~~~~-~ 166 (246)
++.+ +++..+.+... .+..++.++++.+++++++++.. .-+-.+-.|+.+.+...+.|++ +|...+ .
T Consensus 261 Iane--------~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~i 332 (417)
T COG3977 261 IANE--------KVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLI 332 (417)
T ss_pred EccH--------HHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceee
Confidence 9998 89988888754 35588999999999999988732 2334566888888888888886 654322 5
Q ss_pred cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---------CCeEEEEeecChHHHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---------KDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---------~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
+.|+|+.|+|+++.+..+ +.+.+++.|+++|+.++||.+|.. ..++|+++..+++.++.++++|.+
T Consensus 333 HkpEGAIFlWLWf~dLPI-----tt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae 407 (417)
T COG3977 333 HKPEGAIFLWLWFKDLPI-----TTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAE 407 (417)
T ss_pred ecCCcceeehhhhccCCC-----CHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHH
Confidence 899999999999987643 455567789999999999999864 589999999999999999999999
Q ss_pred HHHHHhh
Q 042445 238 FYDRHAE 244 (246)
Q Consensus 238 ~~~~~~~ 244 (246)
.+++..+
T Consensus 408 ~ve~~yq 414 (417)
T COG3977 408 EVERAYQ 414 (417)
T ss_pred HHHHHHh
Confidence 9987554
No 100
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=1.7e-30 Score=219.91 Aligned_cols=200 Identities=18% Similarity=0.265 Sum_probs=155.6
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.+++++|+++| ++++|+||+|.++.+++. .......+..+++++++||||.||++|+|+||+
T Consensus 165 ~l~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~~-~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~ 240 (368)
T PRK03317 165 FLTSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSGT-PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYL 240 (368)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccCC-cCHHHHHHhCCCEEEEEechhhhccchhhhhhh
Confidence 7899999999999988888887766 799999999999876653 222222334458999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+...... +++|++.|.++..+++. .+ +..+.++.++++++.+.+.|++. |+. +..|++
T Consensus 241 ~~~~--------~~~~~l~~~~~~-~~~s~~~~~a~~~~l~~-~~-~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~ 307 (368)
T PRK03317 241 AAAP--------AVVDALRLVRLP-YHLSAVTQAAARAALRH-AD-ELLASVAALRAERDRVVAWLREL-GLR-VAPSDA 307 (368)
T ss_pred hCCH--------HHHHHHHhcCCC-CCCCHHHHHHHHHHhhC-HH-HHHHHHHHHHHHHHHHHHHHHHC-CCE-eCCCCC
Confidence 9988 999988876543 37899999999999974 23 33445566888999999999887 665 567888
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
++++|.+++ ++.+ +.+.+.++||.+.+. +.++++|++++ ++++++.+++.|.+.++.
T Consensus 308 ~~~~~~~~~--------~~~~-~~~~l~~~Gv~v~~~---~~~~~iRi~~~-~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 308 NFVLFGRFA--------DRHA-VWQGLLDRGVLIRDV---GIPGWLRVTIG-TPEENDAFLAALAEVLAT 364 (368)
T ss_pred cEEEEeccC--------CHHH-HHHHHHHCCEEEEeC---CCCCeEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 888886543 1344 455677899999874 33789999998 556688888888887754
No 101
>PRK09105 putative aminotransferase; Provisional
Probab=99.97 E-value=2.6e-30 Score=218.51 Aligned_cols=198 Identities=14% Similarity=0.160 Sum_probs=153.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.++++++++.++ +++++|+||+|.++... .......+..++++++.||||.||++|+|+||+
T Consensus 170 ~l~nP~NPTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~---~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~ 245 (370)
T PRK09105 170 YICNPNNPTGTVTPRADIEWLLANKP-AGSVLLVDEAYIHFSDA---PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLA 245 (370)
T ss_pred EEeCCCCCCCcCcCHHHHHHHHHhCC-CCcEEEEECchHHhccC---cchHHHHhhCCCEEEEecccHhhcCCccceeee
Confidence 78999999999999999999998764 59999999999876532 112222234568999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+... . ...++.+.|.++..++.+ +.++++.++.++++++.+.+.|+++ ++. +..|++
T Consensus 246 v~~~--------~~i~~l~~~-~-~~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~~~ 311 (370)
T PRK09105 246 AARP--------DLLAKLARF-G-HNPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKK-GYK-CTPSQA 311 (370)
T ss_pred ecCH--------HHHHHHHhc-C-CCCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCC-cCCCCC
Confidence 9988 889888776 3 336888899999888873 6789999999999999999999987 665 456666
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
++| +++++. ++.++...++ ++||.+ |..|+. ++++|++++. ++++++.++.|.+++
T Consensus 312 ~f~-~~~~~~-------~~~~l~~~L~-~~gI~v--~~~~~~~~~~~Ris~~~-~~~~~~l~~al~~~~ 368 (370)
T PRK09105 312 NCF-MVDVKR-------PAKAVADAMA-KQGVFI--GRSWPIWPNWVRVTVGS-EEEMAAFRSAFAKVM 368 (370)
T ss_pred cEE-EEeCCC-------CHHHHHHHHH-HCCcEE--ecCCCCCCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence 655 566642 2556655544 669998 334543 7999999994 555677777766654
No 102
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.97 E-value=3.3e-30 Score=215.20 Aligned_cols=191 Identities=18% Similarity=0.227 Sum_probs=149.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.++|.+++++|+ +++++||+||+|.++. +..+.+ .+...+++++++||||.|+++|+|+||+
T Consensus 143 ~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~--~~~~~~--~~~~~~~vi~~~S~SK~~~l~GlRvG~~ 214 (335)
T PRK14808 143 FIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEFH--GESYVD--LLKKYENLAVIRTFSKAFSLAAQRIGYV 214 (335)
T ss_pred EEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhhc--CCchHH--HHHhCCCEEEEEechhhccCcccceEEE
Confidence 8899999999999999888886 4799999999999975 212212 1233458999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ +++.++|.++..+++. ..+..+..+.++++++.+.+.|+++ |+. +..| .
T Consensus 215 v~~~--------~~~~~l~~~~~~~-~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~-g~~-~~~~-~ 280 (335)
T PRK14808 215 VSSE--------KFIDAYNRVRLPF-NVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREM-GYR-ITDS-R 280 (335)
T ss_pred EeCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHC-CCE-ECCC-C
Confidence 9998 9999997765443 7899999999888873 3466777778888899999999987 565 3445 5
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
|.|+|++++.. +...+.+.+.++||.|+. | .+++|++++. .++.++.++.|++
T Consensus 281 g~f~~~~l~~~-------~~~~~~~~l~~~Gi~V~~---~--~~~~Risi~~-~~~~~~~~~~l~~ 333 (335)
T PRK14808 281 GNFVFIFMEKE-------EKERLLEHLRAKNIAVRS---F--REGVRITIGK-REENDMILKELEV 333 (335)
T ss_pred CeEEEEeCCCc-------cHHHHHHHHHHCCeEEEE---C--CCCeEEecCC-HHHHHHHHHHHHh
Confidence 77889888732 335556778899999984 3 4789999985 4556677766654
No 103
>PRK03321 putative aminotransferase; Provisional
Probab=99.97 E-value=2.2e-30 Score=217.96 Aligned_cols=200 Identities=18% Similarity=0.241 Sum_probs=153.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||.+++.+++.++++.+ ++|+++|+||+|.++.+++....++..+...+++++++||||.|++||+|+||+
T Consensus 150 ~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~ 228 (352)
T PRK03321 150 FVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYA 228 (352)
T ss_pred EEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhh
Confidence 7889999999999998888888765 479999999999999887643334444455578999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+...... .++|.++|.++..++.. .+.+.+..++ +.++++.+.+.|++. ++.. .+.+
T Consensus 229 v~~~--------~~~~~~~~~~~~-~~~s~~~q~~a~~~l~~-~~~~~~~~~~-~~~~r~~~~~~L~~~-~~~~--~~~~ 294 (352)
T PRK03321 229 VGHP--------EVIAALRKVAVP-FSVNSLAQAAAIASLAA-EDELLERVDA-VVAERDRVRAALRAA-GWTV--PPSQ 294 (352)
T ss_pred cCCH--------HHHHHHHHhcCC-CCCCHHHHHHHHHHhcC-HHHHHHHHHH-HHHHHHHHHHHHHHC-CCcc--CCCC
Confidence 9988 999998876433 37899999998888873 3444444444 455667788999886 5542 4557
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
|+|+|++++. ++.++ .+.|+++||.+.| |+ .+++|++++ ..++.++++++|.+++
T Consensus 295 g~~i~i~l~~-------~~~~~-~~~l~~~gI~v~~---~~-~~~iRi~~~-~~~~~~~~~~al~~~~ 349 (352)
T PRK03321 295 ANFVWLPLGE-------RTADF-AAAAAEAGVVVRP---FA-GEGVRVTIG-APEENDAFLRAARAWR 349 (352)
T ss_pred CCEEEEeCCC-------CHHHH-HHHHHHCCEEEEc---cC-CCcEEEeeC-CHHHHHHHHHHHHHHh
Confidence 8999988742 24455 4456789999987 32 467999997 5566788888887764
No 104
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.97 E-value=5.9e-30 Score=216.09 Aligned_cols=206 Identities=17% Similarity=0.157 Sum_probs=156.9
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.+..+ ++++||||||.+++.+++.+ +|+++|+++|+||+|.++. +. ...++ ....+++++++||
T Consensus 149 ~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~---l~~~~~~~li~De~y~~~~-~~-~~~~~--~~~~~~vi~~~S~ 221 (361)
T PRK00950 149 DSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRK---ILESTDALVFVDEAYVEFA-EY-DYTPL--ALEYDNLIIGRTF 221 (361)
T ss_pred HHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHH---HHHHCCcEEEEECchhhhC-cc-chHHH--HHhcCCEEEEEee
Confidence 3455554433 77899999999999765554 5577899999999999876 21 22221 2234589999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
||.||+||+|+||+++++ ++++.+......+ +++++.|.++..++.+ ..++++.++.++++++.+.+.|
T Consensus 222 SK~~g~~GlRiG~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~l 290 (361)
T PRK00950 222 SKVFGLAGLRIGYGFVPE--------WLIDYYMRAKTPF-SLTRLSQAAAIAALSD--KEYIEKSIEHGIKSREYLYNEL 290 (361)
T ss_pred hHhhcCchhhcchhcCCH--------HHHHHHHHhcCCC-CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999988 8888888775544 6889999999999973 5677888888888888888777
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--CCeEEEEeecChHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--KDWLRITFAVEPSALENGLGRM 235 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--~~~iRls~~~~~~~l~~~~~~l 235 (246)
+ +. ..|.+++|+|++++.. ++.+++. .|.++||.+.||..|+. ++++|+|++ +.++++++++.|
T Consensus 291 ~----~~--~~~~~~~~i~~~~~~~------~~~~~~~-~l~~~gv~v~~~~~f~~~~~~~lRis~~-~~~~~~~l~~~L 356 (361)
T PRK00950 291 P----FK--VYPSEANFVLVDVTPM------TAKEFCE-ELLKRGVIVRDCTSFRGLGDYYIRVSIG-TFEENERFLEIL 356 (361)
T ss_pred C----ee--ECCCcceEEEEECCCC------CHHHHHH-HHHHCCEEEeeCCccCCCCCCeEEEECC-CHHHHHHHHHHH
Confidence 5 33 2567889999988421 3555555 45578999999988854 679999999 556788888888
Q ss_pred HHHH
Q 042445 236 KAFY 239 (246)
Q Consensus 236 ~~~~ 239 (246)
++.+
T Consensus 357 ~~il 360 (361)
T PRK00950 357 KEIV 360 (361)
T ss_pred HHHh
Confidence 7765
No 105
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.97 E-value=7.8e-30 Score=214.16 Aligned_cols=198 Identities=20% Similarity=0.296 Sum_probs=159.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||.+++.+++.++++.++ +|+++|+||+|.++...+... . .....+++++++|+||.|+++|+|+||+
T Consensus 147 ~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~-~--~~~~~~~~i~~~S~sK~~g~~G~r~G~~ 222 (346)
T TIGR01141 147 FLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL-P--LLAEYPNLIVLRTLSKAFGLAGLRIGYA 222 (346)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH-H--HHhhCCCEEEEehhhHhhhchhhhceee
Confidence 78899999999999999999998887 799999999999776543211 1 1222347899999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.++.....+ ++++++|.++..+++.. .+.++.++.++++++.+.+.|++++++.. .|.+
T Consensus 223 ~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~--~~~~ 289 (346)
T TIGR01141 223 IANA--------EIIDALNKVRAPF-NLSRLAQAAAIAALRDD--DFIEKTVEEINAERERLYDGLKKLPGLEV--YPSD 289 (346)
T ss_pred ecCH--------HHHHHHHhccCCC-CCCHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhcCCCEE--CCCc
Confidence 9988 8888888765443 77899999999999853 37888999999999999999998877762 4567
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSALENGLGRM 235 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~~l~~~~~~l 235 (246)
|+|+|++++. ++.++ .+.|.++||.+.||..|+. ++++|+|++ ++++++++++.|
T Consensus 290 g~~~~~~~~~-------~~~~~-~~~L~~~gI~v~~g~~f~~~~~~iRls~~-~~~~i~~~~~~l 345 (346)
T TIGR01141 290 ANFVLIRFPR-------DADAL-FEALLEKGIIVRDLNSYPGLPNCLRITVG-TREENDRFLAAL 345 (346)
T ss_pred CCEEEEecCC-------CHHHH-HHHHHHCCeEEEeCCCcCCCCCeEEEecC-CHHHHHHHHHHh
Confidence 8999988763 24555 4556688999999998855 799999988 677788877765
No 106
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.96 E-value=1.2e-28 Score=206.15 Aligned_cols=188 Identities=17% Similarity=0.227 Sum_probs=140.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|||||||.+++.+++.+++ ++|+++|+||+|.++... .+.+ .....+++|+++||||.|++||+|+||+
T Consensus 145 ~~~~P~NPtG~~~~~~~l~~i~----~~~~~ii~De~y~~~~~~--~~~~--~~~~~~~vi~l~S~SK~~~l~GlRiG~i 216 (337)
T PRK03967 145 FICSPNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAEFSGK--SLIG--LIDEYPNLILLRTFSKAFGLAGIRAGYA 216 (337)
T ss_pred EEeCCCCCCCCCCCHHHHHHHH----hcCCEEEEECchhhhccc--chHH--HHhhCCCEEEEecchHhhcchhhhheee
Confidence 7889999999999977666654 379999999999987632 2211 2233458999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++++ ++++.+......+ ++|.++|.++..++++ .++..+.++.+.++++.+.+.|++. ..|++
T Consensus 217 v~~~--------~~i~~~~~~~~~~-~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~ 279 (337)
T PRK03967 217 IANE--------EIIDALYRIKPPF-SLNILTMKIVRLALDH--YDLIEERIDYIIKERERVRRELGEY------AYPSD 279 (337)
T ss_pred ecCH--------HHHHHHHhhcCCC-CCCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHhccC------cCCCC
Confidence 9988 8999998876555 7899999999999973 3355556666677788888888764 24688
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
++|+|++++ +.+.|.++||.++++.. ...+++|++++. .++.++.++.|.++.
T Consensus 280 ~~~~~~~~~-------------~~~~l~~~gi~v~~~~~-~~~~~~Ri~~~~-~~~~~~l~~~l~~~~ 332 (337)
T PRK03967 280 ANFLLLKLD-------------AYDYLLENGIVVRKLSG-RLEGHIRVTVGK-REENDEFIKALKEIK 332 (337)
T ss_pred CcEEEEhHH-------------HHHHHHHCCEEEEeCCC-CCCCeEEEecCC-HHHHHHHHHHHHHHH
Confidence 999997542 23456678999998653 236799999995 233344444444443
No 107
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.95 E-value=7.2e-26 Score=189.84 Aligned_cols=210 Identities=29% Similarity=0.482 Sum_probs=172.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++|+||||.+++.+++.+|+++|+++|+++|+|++|+.+.+.+.........+..+.+++++|++|.++.+|.++||+
T Consensus 137 ~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i 216 (350)
T cd00609 137 YLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYL 216 (350)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEE
Confidence 77779999999999999999999999999999999999988876544322223344557899999999998899999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE 170 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 170 (246)
++++. ++.+.++..... +.+.+...+.++..++.... .+.++.++.++++++.+.+.|++.+... ...+.
T Consensus 217 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~ 287 (350)
T cd00609 217 IAPPE-------ELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLV-VVKPS 287 (350)
T ss_pred ecCHH-------HHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCCC
Confidence 99873 577777776443 35789999999999998543 7788889999999999999999875443 24678
Q ss_pred CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC--CCCeEEEEeecChHHHHHHHHHHH
Q 042445 171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--LKDWLRITFAVEPSALENGLGRMK 236 (246)
Q Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~iRls~~~~~~~l~~~~~~l~ 236 (246)
+|+++|++++.. .+.+.+.+++.++||.+.++..|. .++++|++++...++++.++++|+
T Consensus 288 ~g~~~~~~~~~~------~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~~~~i~~~~~al~ 349 (350)
T cd00609 288 GGFFLWLDLPEG------DDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATPEEELEEALERLA 349 (350)
T ss_pred ccEEEEEecCCC------ChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCCHHHHHHHHHHhh
Confidence 899999888653 256677888999999999998887 588999999977888888888875
No 108
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=99.94 E-value=1.2e-25 Score=182.06 Aligned_cols=213 Identities=20% Similarity=0.264 Sum_probs=151.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHH-HHHcCCEEEEccccCCcccC-CCCCcc-c------cccCCcccEEEEcccccccc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAET-AKKLGIMVIANEVYGHLAFG-NTPFVS-M------GVFGSIVPLLTLGSISKRGI 82 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~-~~~~~~~ii~De~y~~~~~~-~~~~~~-~------~~~~~~~~~i~~~s~sK~~~ 82 (246)
+|.+. ||||.+||++..++++++ +...++.|++|++|....+. ..+... + ...+..++++.+.|+||+ .
T Consensus 179 VP~yS-NPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKI-T 256 (425)
T PF12897_consen 179 VPKYS-NPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKI-T 256 (425)
T ss_dssp -SSS--TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTT-S
T ss_pred CCCcc-CCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEeccccc-c
Confidence 66666 999999999999999998 44679999999999977662 222111 1 223557799999999999 8
Q ss_pred cCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhch---HHHHHHHHHHHHHHHHHHHHHhh
Q 042445 83 VPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTE---EEFFSKIIDILRETADKCCDRLK 158 (246)
Q Consensus 83 ~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~ 158 (246)
.||..++++.++. +.++.++..... +.+...+.|....+++.+.. ..++++.++.++.+.+.+.+.|+
T Consensus 257 f~GaGva~~aaS~--------~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~ 328 (425)
T PF12897_consen 257 FPGAGVAFFAASE--------ANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILE 328 (425)
T ss_dssp -TTSS-EEEEE-H--------HHHHHHHHHHHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcceeeeecCH--------HHHHHHHHHhcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999999 889988887553 55889999999999999643 58999999999999999999997
Q ss_pred c-CC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-CCCcCC-----CCeEEEEeec-ChHH
Q 042445 159 E-IP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVGL-----KDWLRITFAV-EPSA 227 (246)
Q Consensus 159 ~-~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~-----~~~iRls~~~-~~~~ 227 (246)
+ +. ++..|..|.||||+++++..+ ..+.+.+++++.||.++| |..|.+ +..||++.+. +.++
T Consensus 329 ~~L~~~~~ia~Wt~P~GGYFIsld~~~G-------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~lee 401 (425)
T PF12897_consen 329 EELGDGLGIASWTKPKGGYFISLDVLDG-------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEE 401 (425)
T ss_dssp HHHGTGGTSEEE---SBSS-EEEEESTT--------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHH
T ss_pred HhcCCCCCeeEecCCCCceEEEEecCCC-------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHH
Confidence 6 65 577799999999999988765 678889999999999999 766654 6899999997 8899
Q ss_pred HHHHHHHHHHHHHH
Q 042445 228 LENGLGRMKAFYDR 241 (246)
Q Consensus 228 l~~~~~~l~~~~~~ 241 (246)
++.+++.+..+++-
T Consensus 402 l~~Am~~~~~cv~l 415 (425)
T PF12897_consen 402 LETAMDVFATCVKL 415 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888653
No 109
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=4.5e-26 Score=174.91 Aligned_cols=208 Identities=17% Similarity=0.150 Sum_probs=170.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++|+||||..++.+++.+|++.-. |.++|+||+|-+|+-. .+.+..+..+.|++++.+|||.||++|+|+||.
T Consensus 165 F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYidFsg~---~S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~ 239 (375)
T KOG0633|consen 165 FLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYIDFSGV---ESRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYG 239 (375)
T ss_pred EEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEeeccc---cccchHhHhCCceeehhhhhhhcCcceeEeecc
Confidence 99999999999999999999997444 8999999999998842 234556677889999999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
..+. .+.+-+......+ ++|..+..++..++++..-..++..+..+.+.+.++...|.+++++..+..+..
T Consensus 240 ~~~~--------~ia~iln~~KaPY-NiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~d 310 (375)
T KOG0633|consen 240 AFPL--------SIAEILNRAKAPY-NISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSD 310 (375)
T ss_pred cccH--------HHHHHHHhccCCc-cccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCccc
Confidence 9998 8888888886655 889999999999999666788999999999999999999999988876778888
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec-CCCcCCCCeEEEEeecChHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP-GITVGLKDWLRITFAVEPSALENGLGRMKA 237 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~~~~iRls~~~~~~~l~~~~~~l~~ 237 (246)
++|+.+++....- + -+.....+.+.+.||.|+- |+--++.|++|++++.+++. .-.++.|++
T Consensus 311 aNFiLi~v~~~~n-~--~akkly~q~at~~gVvVRfrgse~~c~G~lRitvGt~Een-tvL~k~~K~ 373 (375)
T KOG0633|consen 311 ANFILIEVTGGDN-G--MAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVGTPEEN-TVLMKCLKQ 373 (375)
T ss_pred ccEEEEEEcCCCc-H--HHHHHHHHHHHhcceEEEEcCCccccceeEEEEcCCcccc-hHHHHHHHh
Confidence 9999999874320 1 1566778888899999985 55555699999999975443 334444443
No 110
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.94 E-value=3.3e-25 Score=185.20 Aligned_cols=198 Identities=18% Similarity=0.165 Sum_probs=151.1
Q ss_pred CCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEee
Q 042445 15 FQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTS 94 (246)
Q Consensus 15 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~ 94 (246)
+++||+|.+++.+++++|+++|+++|+++|+||+|..+..+..+..+....+ .+ ++++|||| +++|+|+||++++
T Consensus 143 tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~--~d-ivv~s~SK--alaG~r~G~v~~~ 217 (346)
T TIGR03576 143 TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLG--AD-LVVTSTDK--LMDGPRGGLLAGR 217 (346)
T ss_pred ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcC--Cc-EEEeccch--hccccceEEEEeC
Confidence 5569999999999999999999999999999999998764311111222222 12 66779999 4789999999999
Q ss_pred CCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCce
Q 042445 95 DPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSM 173 (246)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 173 (246)
+ ++++.+..... +.++++++.|.++.++|+... .+..++.++++++.+.+.++.+ . + .|++++
T Consensus 218 ~--------~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~---~~~~~~~l~~r~~~~~~~l~~~---~-~-~~~~~~ 281 (346)
T TIGR03576 218 K--------ELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE---LSRIRDAFKRKEEVYLRLFDKL---N-V-ERTPTG 281 (346)
T ss_pred H--------HHHHHHHHhhcCcccCccHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHhC---C-C-CcCCCe
Confidence 8 99999988754 343578889999999997421 3566788888888888888753 2 2 234555
Q ss_pred EEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChH---HHHHHHHHHHHHH
Q 042445 174 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPS---ALENGLGRMKAFY 239 (246)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~---~l~~~~~~l~~~~ 239 (246)
|+|++++.. ++.+++.++++++||.++||..|.. ++|+|+|++.+++ +.+..++.|++.+
T Consensus 282 f~~~~~~~~------~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 282 FVIKGVEEE------KLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred EEEEeCCCC------CHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 899888632 2568889999999999999988853 8899999997664 6777777776543
No 111
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.93 E-value=4.2e-24 Score=182.56 Aligned_cols=213 Identities=14% Similarity=0.171 Sum_probs=148.9
Q ss_pred hhhhhhccc----cccCCcCCCc-cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 3 LINQDITRE----FSDFQVFHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
.+++.+.++ +++.++||+| .+++.+++++|.++|++||+++|+||+|.++.+.+.. .+....+...+ +.||
T Consensus 174 ~l~~~i~~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~-~~~~~~~~~pd---i~t~ 249 (396)
T PRK02627 174 ALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL-FAYQHYGIEPD---IMTL 249 (396)
T ss_pred HHHHhcCCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce-eeehhcCCCCC---EEEE
Confidence 344444433 6666689999 6889999999999999999999999999988766532 22222222222 3479
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~ 155 (246)
||.++ +|+|+||+++++ ++++.+... ...+++.|++.|+++.++++... +.+.++.++.....++.+.+
T Consensus 250 sK~~~-~G~rig~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (396)
T PRK02627 250 AKGLG-GGVPIGAVLAKE--------KVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRE 320 (396)
T ss_pred cchhh-CCcccEEEEEcH--------HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 99987 899999999998 888877643 33345789999999999998533 23344444444444444444
Q ss_pred HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHH
Q 042445 156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLG 233 (246)
Q Consensus 156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~ 233 (246)
.+.+.+.+.. .+..|.++|++++. +..+++.. +.++||.+.|+. .+++|++++ .++++++++++
T Consensus 321 ~~~~~~~~~~--~~~~g~~~~i~~~~-------~~~~~~~~-l~~~Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~~~ 386 (396)
T PRK02627 321 LLEKYPGIKE--VRGLGLMIGIELDR-------PAAEIVKK-ALEKGLLINVTG----DNVLRLLPPLIISKEEIDEAVD 386 (396)
T ss_pred HHHhCCCeee--eccCcEEEEEEecC-------cHHHHHHH-HHHCCeEEeecC----CCEEEEECCcccCHHHHHHHHH
Confidence 4444433332 23458889988732 24555554 556799999965 478999875 48999999999
Q ss_pred HHHHHHHHH
Q 042445 234 RMKAFYDRH 242 (246)
Q Consensus 234 ~l~~~~~~~ 242 (246)
+|.++++++
T Consensus 387 ~l~~~l~~~ 395 (396)
T PRK02627 387 RLEEVLKEL 395 (396)
T ss_pred HHHHHHHhh
Confidence 999998754
No 112
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.92 E-value=5.9e-24 Score=181.91 Aligned_cols=215 Identities=15% Similarity=0.198 Sum_probs=156.3
Q ss_pred hhhhhhccc---cccCCcCCCccCC--ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 3 LINQDITRE---FSDFQVFHVGSGF--SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 3 ~~~~~~~~~---~~~~p~NPtG~~~--~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
.+++.+.++ ++.+|.||+|-++ +.+++++|.++|++||+++|+||+|.++.+++..+ +....+.. .-+.||
T Consensus 176 ~l~~~l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~~~~~~---pdi~s~ 251 (403)
T PRK05093 176 AVKAVIDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF-AYMHYGVT---PDILTS 251 (403)
T ss_pred HHHHHhcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hhhhcCCC---CCEEEe
Confidence 444445433 6666989998875 88999999999999999999999999887776432 22122111 115689
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
||.++ +|+|+||+++++ ++++.+... ...+++.+++.|.++.+.|+... -.+..+.++++++.+.+.
T Consensus 252 sK~l~-~G~rig~vv~~~--------~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~---~~~~~~~~~~~~~~l~~~ 319 (403)
T PRK05093 252 AKALG-GGFPIGAMLTTA--------EIASHFKVGTHGSTYGGNPLACAVAEAVFDIIN---TPEVLEGVKARRQRFVDG 319 (403)
T ss_pred ccccc-CCcceEEEEEcH--------HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHH
Confidence 99987 899999999998 888888653 44455789999999999886321 234557788899999999
Q ss_pred hhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445 157 LKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG 231 (246)
Q Consensus 157 L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~ 231 (246)
|+++. ++. ...+.+|+++|+.++... ..++.+++. .+.++||.+.|+. .+++|++++ .++++++++
T Consensus 320 L~~~~~~~~~~-~~~~~~G~~~~~~l~~~~---~~~~~~~~~-~l~~~Gv~v~~~g----~~~lRl~~~~~~~~~~i~~~ 390 (403)
T PRK05093 320 LQKINQKYGVF-SEIRGMGLLIGAELKPQY---KGRARDFLN-AAAEEGVMVLVAG----PDVLRFAPSLVIEEADIDEG 390 (403)
T ss_pred HHHHHhhCCCe-EeEeeCceEEEEEecCcc---hhHHHHHHH-HHHHCCeEEecCC----CCEEEEeCCCCCCHHHHHHH
Confidence 98752 221 234467899998886421 001445554 5567899998853 589999766 389999999
Q ss_pred HHHHHHHHHHH
Q 042445 232 LGRMKAFYDRH 242 (246)
Q Consensus 232 ~~~l~~~~~~~ 242 (246)
+++|.+++.+.
T Consensus 391 ~~~l~~~l~~~ 401 (403)
T PRK05093 391 LARFEKAVAKV 401 (403)
T ss_pred HHHHHHHHHHh
Confidence 99999998653
No 113
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.91 E-value=3.4e-23 Score=176.52 Aligned_cols=210 Identities=10% Similarity=0.127 Sum_probs=143.0
Q ss_pred hhhhhhccc----cccCCcCCCc-cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 3 LINQDITRE----FSDFQVFHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
.+++.++++ +++.++||+| .++|.+++++|.++|++||+++|+||+|.++.+.+..+ +....+-... +.|+
T Consensus 167 ~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~-~~~~~~~~pd---i~t~ 242 (389)
T PRK01278 167 ALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF-AHEWAGVTPD---IMAV 242 (389)
T ss_pred HHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce-eecccCCCCC---EEEE
Confidence 444545433 4544467778 78999999999999999999999999999887666432 2111111111 4589
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch----HHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE----EEFFSKIIDILRETADK 152 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~ 152 (246)
||.++ +|+|+||+++++ ++++.+... ...+++.|++.|+++.+.|+... .+++.+..+.++++.+.
T Consensus 243 sK~l~-~G~~ig~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~ 313 (389)
T PRK01278 243 AKGIG-GGFPLGACLATE--------EAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEG 313 (389)
T ss_pred ehhcc-CCcceEEEEEcH--------HHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99986 899999999998 888877654 33455789999999988886421 12333344444444333
Q ss_pred HHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHH
Q 042445 153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALEN 230 (246)
Q Consensus 153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~ 230 (246)
+. ++.+++...+.+ .|.++++++.. ++.+++.. |.++||.+.|+. .+++||+++ .+++++++
T Consensus 314 l~---~~~~~~~~~v~g-~G~~~~i~~~~-------~~~~~~~~-l~~~GV~~~p~~----~~~lR~~p~~~~~~~~i~~ 377 (389)
T PRK01278 314 LV---DRFPDVIEEVRG-KGLLLGLKCVV-------PNRDLVQA-LRDEGLLTVGAG----DNVVRLLPPLIITEEEIDE 377 (389)
T ss_pred HH---hhCCCceeeEec-ccEEEEEEEec-------CHHHHHHH-HHHCCeEEeecC----CCEEEEeCCcccCHHHHHH
Confidence 32 223323212333 57788877743 24556555 446699999974 689999975 48999999
Q ss_pred HHHHHHHHHHH
Q 042445 231 GLGRMKAFYDR 241 (246)
Q Consensus 231 ~~~~l~~~~~~ 241 (246)
++++|.+++++
T Consensus 378 ~l~~l~~~l~~ 388 (389)
T PRK01278 378 ALERLERAAES 388 (389)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 114
>PLN02822 serine palmitoyltransferase
Probab=99.91 E-value=1.4e-22 Score=176.25 Aligned_cols=214 Identities=14% Similarity=0.119 Sum_probs=158.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
+++.++||+|.+.+ +++|.++|++||+++|+||+|+.+.++.. +......+...+..++++||||.|+++| |
T Consensus 250 vve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G---G 323 (481)
T PLN02822 250 VVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG---G 323 (481)
T ss_pred EEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC---e
Confidence 66778899999999 89999999999999999999997777632 2212222222345689999999999999 9
Q ss_pred EEEeeCCCCCcchhhHHHHHHHH-hhhcCCC--CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDP--ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP 166 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 166 (246)
|+++++ ++++.++.. ...+++. ++..+.++..+|+.. +. ..+.++.++++++.+.+.|++.+|+. +
T Consensus 324 ~i~g~~--------~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l-~~-~~~~~~~l~~~~~~l~~~L~~~~g~~-~ 392 (481)
T PLN02822 324 FCTGSA--------RVVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-ED-NPSVLAKLKENIALLHKGLSDIPGLS-I 392 (481)
T ss_pred EEEcCH--------HHHHHHHhcCCceeeccccCHHHHHHHHHHHHHH-Hh-CHHHHHHHHHHHHHHHHHHHhcCCcc-c
Confidence 999988 889888754 3333343 477778887788632 22 25678889999999999999876776 4
Q ss_pred cCCCCceEEEEEeccccccCCCC----hHHHHHHHHHhcCeEEecCCC--cCC---CCeEEEEee--cChHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLLEGINS----DMEFALKLAKEESVIVLPGIT--VGL---KDWLRITFA--VEPSALENGLGRM 235 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gi~v~pg~~--f~~---~~~iRls~~--~~~~~l~~~~~~l 235 (246)
..+.+++++++.++... ....+ ..+++..++.++||.+.|+.+ |+. +.++|++++ .+++++++++++|
T Consensus 393 ~~~~~spi~~l~l~~~~-~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l 471 (481)
T PLN02822 393 GSNTLSPIVFLHLEKST-GSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESL 471 (481)
T ss_pred CCCCCCCEEEEEeCCCc-ccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 56778999999886420 00001 245666667789999998643 322 457999988 4999999999999
Q ss_pred HHHHHHHh
Q 042445 236 KAFYDRHA 243 (246)
Q Consensus 236 ~~~~~~~~ 243 (246)
++++.+..
T Consensus 472 ~~~~~~~~ 479 (481)
T PLN02822 472 KRVAASVL 479 (481)
T ss_pred HHHHHHHh
Confidence 99988754
No 115
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.91 E-value=5.5e-23 Score=174.73 Aligned_cols=199 Identities=14% Similarity=0.144 Sum_probs=140.4
Q ss_pred cccCCcCCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++.++||+|.. ++.+++++|.++|+++|+++|+||+|.++.+.+.. .+....+...++ .+|||.++ +|+|+||
T Consensus 175 ~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~-~~~~~~~~~~d~---~t~sK~~~-~G~riG~ 249 (379)
T TIGR00707 175 IVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKF-FAYEHYGIEPDI---ITLAKGLG-GGVPIGA 249 (379)
T ss_pred EEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchh-hhHHhcCCCCCE---EEEccccc-CCcccEE
Confidence 554445566653 68999999999999999999999999987665532 222222222233 36899998 9999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC-CCccccC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP-CITCPKK 168 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~ 168 (246)
+++++ ++++.+... ....++.+++.|.++.++|+... ..+.++.++++++.+.+.|+++. .......
T Consensus 250 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (379)
T TIGR00707 250 TLAKE--------EVAEAFTPGDHGSTFGGNPLACAAALAVLEVIE---KERLLENVKEKGDYFKERLEELGKNYPNKEV 318 (379)
T ss_pred EEEcH--------HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 99988 888888764 33344789999999998887321 12355566677777777776531 1110112
Q ss_pred CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAF 238 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~ 238 (246)
+..|+++|++++. +...+.+.|.++||.+.|+. .+++|++++ .+++++++++++|+++
T Consensus 319 ~~~g~~~~~~~~~--------~~~~~~~~l~~~Gv~v~~~~----~~~lRi~~~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 319 RGKGLMLGIELEA--------PCKDIVKKALEKGLLVNCAG----PKVLRFLPPLIITKEEIDEAVSALEEA 378 (379)
T ss_pred ccCceEEEEEecC--------cHHHHHHHHHHCCcEEeeCC----CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 3468888887753 23444556888999999854 589999976 4899999999999875
No 116
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.91 E-value=9.7e-23 Score=174.88 Aligned_cols=207 Identities=14% Similarity=0.118 Sum_probs=147.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc-EEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++|+||||.+++ +++|.++|+++|+++|+||+|....++..+.......+..++ .++++||||.||++| ||
T Consensus 183 ~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G---G~ 256 (410)
T PRK13392 183 AFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG---GY 256 (410)
T ss_pred EEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc---ch
Confidence 88999999999988 888999999999999999999955543322111111111122 388899999999998 99
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
+++++ ++++.++.... ++++.+++.+.++..+|+. .......++.++++++.+.+.|+++ |+. +.
T Consensus 257 ~~~~~--------~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~ 324 (410)
T PRK13392 257 IAASA--------DLIDFVRSFAPGFIFTTALPPAVAAGATAAIRH--LKTSQTERDAHQDRVAALKAKLNAN-GIP-VM 324 (410)
T ss_pred hhcCH--------HHHHHHHHhCcchhccCcCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHc-CCC-CC
Confidence 99887 88888876643 2335667888888888873 2223455677899999999999887 665 33
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~--~~~~~l~~~~~~l~~~~~~~ 242 (246)
.++++ ++.+.++... +..++...++.++||.+.++..... .+++|+++. .++++++.+++.|.+++++.
T Consensus 325 ~~~~~-~~~i~~~~~~-----~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 325 PSPSH-IVPVMVGDPT-----LCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred CCCCC-EEEEEeCCHH-----HHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 44444 4444454221 1344555555688999998654332 478999997 38999999999999887653
No 117
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.91 E-value=6e-23 Score=175.32 Aligned_cols=209 Identities=18% Similarity=0.173 Sum_probs=148.2
Q ss_pred hhhhhhhccc----cccCCcCCCccCCCh-hhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSG-SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~-~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
|.+++.+.++ +++.++||||.++++ +++++|.++|++||+++|+||+|.++..++..+ .....+.. ..+.+
T Consensus 177 ~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~-~~~~~~~~---pdi~~ 252 (396)
T PRK04073 177 EALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF-ACDWDNVT---PDMYI 252 (396)
T ss_pred HHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHH-HhhhcCCC---CCEEE
Confidence 3444445433 677778999999876 479999999999999999999999887655322 11112211 22446
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+||.++++|+|+||+++++ ++++.+... ...+++.+++++.++.+.|+...+. ...+..+++++.+.+
T Consensus 253 ~sK~lg~gg~~ig~~~~~~--------~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~---~l~~~~~~~~~~l~~ 321 (396)
T PRK04073 253 LGKALGGGVFPISCVAANR--------DILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEE---KLPERSLELGEYFKE 321 (396)
T ss_pred ecccccCCCCcceEEEEcH--------HHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHH
Confidence 8999999999999999998 888887643 3344578999999999999742222 233555667888888
Q ss_pred HhhcC--CCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445 156 RLKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG 231 (246)
Q Consensus 156 ~L~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~ 231 (246)
.|+++ +.+. ...+ .|.|++++++. ++.++ ...|.++||.+.+.. +++|||++. .++++++++
T Consensus 322 ~L~~l~~~~i~-~~~~-~g~~~~~~~~~-------~~~~~-~~~l~~~Gv~~~~~~----~~~iRi~p~l~~t~e~i~~~ 387 (396)
T PRK04073 322 QLKEIDNPMIK-EVRG-RGLFIGVELNE-------PARPY-CEALKEEGLLCKETH----ETVIRFAPPLVITKEELDWA 387 (396)
T ss_pred HHHhhcCCccc-ceec-ceEEEEEEecc-------hHHHH-HHHHHHCCeEEecCC----CCEEEEECCcccCHHHHHHH
Confidence 88775 2232 2233 46778877753 14444 445668899998732 579999965 499999999
Q ss_pred HHHHHHHH
Q 042445 232 LGRMKAFY 239 (246)
Q Consensus 232 ~~~l~~~~ 239 (246)
+++|++++
T Consensus 388 ~~~l~~~l 395 (396)
T PRK04073 388 FEKIKAVL 395 (396)
T ss_pred HHHHHHHh
Confidence 99998875
No 118
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.90 E-value=1.4e-22 Score=173.33 Aligned_cols=204 Identities=12% Similarity=0.090 Sum_probs=148.9
Q ss_pred cccCCcCCCccCCChh-hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGS-FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~-~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+++.++||+|.+++++ ++++|.++|++||+++|+||+|.++...+..+ .....+-..+ +.+|||.++ +|+|+||
T Consensus 188 iiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-~~~~~~~~pD---i~t~sK~l~-~G~~ig~ 262 (398)
T PRK03244 188 FLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF-AHQHDGVTPD---VVTLAKGLG-GGLPIGA 262 (398)
T ss_pred EEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH-hhhhhCCCCC---EEEEchhhh-CCcccEE
Confidence 6667789999998764 59999999999999999999999877665432 1111221122 347899987 8999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-cC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP-KK 168 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~ 168 (246)
+++++ ++++.+... ...+++.|++.+.++.++|+...+ .+..+.++++.+.+.+.|++++ ...+ ..
T Consensus 263 ~~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~-~~~~~~v 330 (398)
T PRK03244 263 CLAFG--------PAADLLTPGLHGSTFGGNPVACAAALAVLDTIAS---EGLLENAERLGEQLRAGIEALG-HPLVDHV 330 (398)
T ss_pred EEEcH--------HHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHhcC-CCceeeE
Confidence 99998 888877653 334558899999999999873221 2344556666777888887752 2101 12
Q ss_pred CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
...|+++|+.++.. ....+.+.+.++||.+.|.. .+.+|+++.. ++++++++++.|.+++++.+
T Consensus 331 ~g~g~~~~i~~~~~-------~~~~~~~~l~~~Gv~~~~~~----~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 331 RGRGLLLGIVLTAP-------VAKAVEAAAREAGFLVNAVA----PDVIRLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred eeccEEEEEEEecc-------HHHHHHHHHHHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 34789999988632 33445566778999998843 5889999774 89999999999999998754
No 119
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.90 E-value=1.4e-22 Score=174.34 Aligned_cols=214 Identities=18% Similarity=0.129 Sum_probs=154.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+-..++||++..++.+++++|.++|++||+++|+||+|.++.+.+..+ +.... +.++.+.||||.++ +|+|+||+
T Consensus 205 ~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~-~~~~~---~~~pdi~s~sK~l~-~G~rig~v 279 (425)
T PRK08088 205 IEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLF-AMEQM---GVAADLTTFAKSIA-GGFPLAGV 279 (425)
T ss_pred ECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-HHhhc---CCCCCEEEEecccc-CCCcceee
Confidence 334557888889999999999999999999999999999876654322 21111 23345899999975 89999999
Q ss_pred EeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
++++ ++++.+... ...+++.+++.|.++..+|+... ++++++.++..++.++.+.+.+++.|.+.. +.+
T Consensus 280 ~~~~--------~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-v~g 350 (425)
T PRK08088 280 TGRA--------EVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGD-VRG 350 (425)
T ss_pred EecH--------HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-Eec
Confidence 9998 888888655 33455789999999999999754 466677776655555555555555654432 222
Q ss_pred CCceEEEEEecccccc--CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLE--GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
. |+++|+.+....-. ........+...+.++||.+.|+..+ .+.+||+++. +++++++++++|.+++++.
T Consensus 351 ~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~--~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 351 L-GAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPY--YNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred c-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCC--CCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 2 89999998432100 00012445566677899998886544 5899999994 7999999999999998753
No 120
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.90 E-value=5e-22 Score=167.50 Aligned_cols=199 Identities=14% Similarity=0.090 Sum_probs=145.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCC--ccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPF--VSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
+..+++||||...+ +++|.++|+++|+++|+||+|..+.++..+. .+...+.+.+++|+++|+||.|+++| |
T Consensus 151 ~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g---G 224 (360)
T TIGR00858 151 VTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG---A 224 (360)
T ss_pred EEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC---c
Confidence 56677899998766 7889999999999999999998766553222 22223334567899999999998887 9
Q ss_pred EEEeeCCCCCcchhhHHHHHHHHhh-h--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIFLN-I--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP 166 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 166 (246)
|+++++ ++++.+..... . +.+.++..+.++..+++. .....+.++.++++++.+.+.|+++ ++..
T Consensus 225 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~- 292 (360)
T TIGR00858 225 YVAGSQ--------ALIDYLINRARTLIFSTALPPAVAAAALAALEL--IQEEPWRREKLLALIARLRAGLEAL-GFTL- 292 (360)
T ss_pred EEEcCH--------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHHHHc-CCcc-
Confidence 999987 88888765422 1 223556655566666652 2234567889999999999999987 5553
Q ss_pred cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRM 235 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l 235 (246)
.+.+++++|+.++... +...+.+.|.++||.+.++..+.. .+++|++++. +++++++++++|
T Consensus 293 -~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l 359 (360)
T TIGR00858 293 -MPSCTPIVPVIIGDNA------SALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEAL 359 (360)
T ss_pred -CCCCCCEEEEEeCCHH------HHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhh
Confidence 3567888998876421 233445556788999998766532 4689999995 889999998876
No 121
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=99.89 E-value=3.2e-22 Score=161.41 Aligned_cols=227 Identities=22% Similarity=0.300 Sum_probs=173.9
Q ss_pred hccc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCccccc----cCC----cccEEEEcc
Q 042445 8 ITRE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMGV----FGS----IVPLLTLGS 76 (246)
Q Consensus 8 ~~~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~----~~~----~~~~i~~~s 76 (246)
+.++ ++-||+||||+++|++.+++|+.+|.++++.++.||+|.+-.|.+ ..|.+++. ++. ...++.++|
T Consensus 214 i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhS 293 (475)
T KOG0258|consen 214 INPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHS 293 (475)
T ss_pred CCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeec
Confidence 4444 788999999999999999999999999999999999999888875 35655533 221 224788999
Q ss_pred ccccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch---------HHHHHHHHHHH
Q 042445 77 ISKRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE---------EEFFSKIIDIL 146 (246)
Q Consensus 77 ~sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~---------~~~~~~~~~~~ 146 (246)
.||.+.+ .|.|-||+-.-+-. ++....+.+......+.+..+|......++.+. ........+.+
T Consensus 294 vSKGy~gECG~RGGYmEv~n~~-----prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l 368 (475)
T KOG0258|consen 294 VSKGYMGECGQRGGYMESLNRD-----PRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSL 368 (475)
T ss_pred ccccceeeecccCCeeecccCC-----hhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHH
Confidence 9999866 88999998664411 155555655555444777888888877777432 23456677788
Q ss_pred HHHHHHHHHHhhcCCCCccccCCCCceEEEEEecccc--c-----cCCCChHHHHHHHHHhcCeEEecCCCcCC---CCe
Q 042445 147 RETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL--L-----EGINSDMEFALKLAKEESVIVLPGITVGL---KDW 216 (246)
Q Consensus 147 ~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~-----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~ 216 (246)
+++++.+.+.+++++|+.+ .+++|+||++.++..+. + .++..++-.+.+||++.||.++||++|+. +-+
T Consensus 369 ~~ra~l~~~~~ns~~gi~c-n~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH 447 (475)
T KOG0258|consen 369 RSRAKLTEDAFNSLEGISC-NPVQGAMYLFPQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYH 447 (475)
T ss_pred HHHhHHHHHHHhhcCceee-ccCccceeecccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeE
Confidence 8999999999999999995 89999999998765321 1 24445777899999999999999999998 467
Q ss_pred EEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 217 LRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 217 iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
+|.++.... + +.+++++++-.++.
T Consensus 448 ~R~TiLp~~--~-~~i~~~~~fH~~f~ 471 (475)
T KOG0258|consen 448 FRTTILPPG--L-EIIEKFKKFHAEFM 471 (475)
T ss_pred EEEeecCch--h-HHHHHHHHHHHHHH
Confidence 999988644 4 77888887766654
No 122
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.89 E-value=5e-22 Score=168.72 Aligned_cols=198 Identities=15% Similarity=0.225 Sum_probs=142.4
Q ss_pred cccCCcCCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++..+++++|.. .+++++++|.++|++||+++|+||+|.++.+.+..+ +....+.... +.++||.++ +|+|+||
T Consensus 172 i~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~-~~~~~~~~~d---i~t~sK~l~-~G~~ig~ 246 (377)
T PRK02936 172 MLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-AYEQFGLDPD---IVTVAKGLG-NGIPVGA 246 (377)
T ss_pred EEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-HHHhhCCCCc---EEEEccccc-CCCccEE
Confidence 555556888876 578999999999999999999999999887766432 2222222222 347999987 8999999
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCcc
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITC 165 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~ 165 (246)
+++++ ++.+.+... ...+++.|++.|.++.++|+.... +...+.++++.+.+.+.|++ ++.+..
T Consensus 247 v~~~~--------~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 315 (377)
T PRK02936 247 MIGKK--------ELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECVKN 315 (377)
T ss_pred EEEcH--------HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEe
Confidence 99988 888877644 334447899999999999985321 23334555666666666654 332221
Q ss_pred ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445 166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY 239 (246)
Q Consensus 166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~ 239 (246)
+. ..|+++|++++. +.+.+...+.++||.+.|+. .+++||++. .+++++++++++|.+++
T Consensus 316 -v~-~~g~~~~i~~~~--------~~~~~~~~l~~~gv~v~~~g----~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 316 -IR-GKGLMIGIECTE--------EVAPVIEQLREEGLLVLSAG----PNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred -Ee-ecceEEEEEecc--------hHHHHHHHHHHCCeEEecCC----CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 22 357889988863 24455667889999998854 589999964 58999999999998763
No 123
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.88 E-value=1.3e-21 Score=168.96 Aligned_cols=221 Identities=17% Similarity=0.124 Sum_probs=156.0
Q ss_pred hhhhhhhcc----c----cccCCcCCCc-cCCChhhHHHHHHHHHHcCCEEEEccccC--CcccCC-----CCCcccccc
Q 042445 2 ELINQDITR----E----FSDFQVFHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYG--HLAFGN-----TPFVSMGVF 65 (246)
Q Consensus 2 e~~~~~~~~----~----~~~~p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~--~~~~~~-----~~~~~~~~~ 65 (246)
|.+++.+++ + ++++|||||| .++|.+++++|.++|++||+++|+|+++. ...|.. ....++..+
T Consensus 164 e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i 243 (460)
T PRK13238 164 EKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEI 243 (460)
T ss_pred HHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHH
Confidence 456666662 2 8999999998 99999999999999999999999999663 233321 111222211
Q ss_pred CCcccEEEEcccccccccCCceE-----E-EEEeeCCCCCcchhhHHHHHHHHh----hh-cCCC-CchHHHHHHHHHhh
Q 042445 66 GSIVPLLTLGSISKRGIVPGLRL-----G-WLVTSDPNGILQDSGIVDSIKIFL----NI-SSDP-ATFIQGAVPQILEK 133 (246)
Q Consensus 66 ~~~~~~i~~~s~sK~~~~~g~r~-----G-~i~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~-~~~~q~~~~~~l~~ 133 (246)
+..++|++|.+.++|+|+ | ++++++. ++.++++... ++ +++. +...|.|++..|.+
T Consensus 244 -----~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~-------~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e 311 (460)
T PRK13238 244 -----AREMFSYADGLTMSAKKDAMVNIGGLLCFRDE-------DLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYE 311 (460)
T ss_pred -----hhhhcccCcEEEEecccCCCCcceeEEEcChH-------HHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHH
Confidence 234567777777777775 3 4455532 7888877653 22 3344 44458888877764
Q ss_pred ch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEecccc--cc--CCCChHHHHHHHHHhcCeEEecC
Q 042445 134 TE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSL--LE--GINSDMEFALKLAKEESVIVLPG 208 (246)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~~--~~~~~~~~~~~ll~~~gi~v~pg 208 (246)
.. +.++....+ +++.+.+.|++. |+. +..|.||+|+++++..-. ++ +. .+.+++.+++++.||.+.|+
T Consensus 312 ~~~~~~~~~~~~----~~~~l~~~L~~~-G~~-~~~p~Gg~~v~~d~~~~~~~~~~~~~-~~~~~a~~L~~e~GV~~~~~ 384 (460)
T PRK13238 312 GMDEDYLAYRIG----QVEYLGEGLEEA-GVP-IQTPAGGHAVFVDAGKFLPHIPAEQF-PAQALACELYLEAGIRGVEI 384 (460)
T ss_pred hhChHHHHHHHH----HHHHHHHHHHHC-CCC-eEccCCceEEEEEchhcCCCCCCCCC-chHHHHHHHHHHcCeeeecc
Confidence 32 344444433 578899999886 777 578999999999885320 10 11 36789999999999999998
Q ss_pred CCcCC-------------CCeEEEEeec---ChHHHHHHHHHHHHHHHH
Q 042445 209 ITVGL-------------KDWLRITFAV---EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 209 ~~f~~-------------~~~iRls~~~---~~~~l~~~~~~l~~~~~~ 241 (246)
+.|.. .+.+||++.. +++.++.++++|....++
T Consensus 385 ~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~ 433 (460)
T PRK13238 385 GSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKEN 433 (460)
T ss_pred cceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 87753 3789999996 999999999999987643
No 124
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.88 E-value=5.7e-21 Score=163.83 Aligned_cols=207 Identities=17% Similarity=0.095 Sum_probs=146.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++++||+|.+.+ +++|.++|++||+++|+||+|+...++..+.......+. .+..++++||||.||++| ||
T Consensus 183 ~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~ 256 (407)
T PRK09064 183 AFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG---GY 256 (407)
T ss_pred EEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC---ce
Confidence 88889999999887 889999999999999999999854443222111111121 234688999999999988 99
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
+++++ ++++.+..... ++++.++..+.++.+.++... .....++.++++++.+.+.|+++ |+.. .
T Consensus 257 ~~~~~--------~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~ 324 (407)
T PRK09064 257 IAGSA--------ALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLK--ESNEERERHQERAAKLKAALDAA-GIPV-M 324 (407)
T ss_pred EecCH--------HHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCC-C
Confidence 99988 88888876532 233567777777777776321 12344677889999999999886 5653 3
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
. ..+.++++.++... ...++...++.++||.+.+...+.. .+++|++++. ++++++++++.|++++++.
T Consensus 325 ~-~~~~iv~i~~~~~~-----~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 325 P-NESHIVPVMVGDPE-----KCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred C-CCCCEEEEEeCCHH-----HHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3 34566666664311 1345555555677999998654432 3689999984 8999999999999988754
No 125
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.88 E-value=2.6e-21 Score=165.69 Aligned_cols=218 Identities=14% Similarity=0.147 Sum_probs=157.0
Q ss_pred hhhhhhccc---cccCCcCCCccCC--ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 3 LINQDITRE---FSDFQVFHVGSGF--SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 3 ~~~~~~~~~---~~~~p~NPtG~~~--~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
.+++.+..+ ++..|.||+|-++ +.+++++|.++|++||+++|+||+|.++.+.+..+ +....+-... +.|+
T Consensus 175 ~l~~~l~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~-~~~~~~v~pD---i~t~ 250 (406)
T PRK12381 175 SASALIDDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVTPD---VLTT 250 (406)
T ss_pred HHHHhccCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh-hhHhhCCCCC---EEEe
Confidence 444445433 6668999998765 68999999999999999999999999887766432 2212221112 4589
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
||.++ +|+|+||+++++ ++++.+... ...+++.+++.+.++.+.|+... ..+.++.++++.+.+.+.
T Consensus 251 sK~l~-gG~~ig~~~~~~--------~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~---~~~~~~~~~~~~~~l~~~ 318 (406)
T PRK12381 251 AKALG-GGFPIGAMLTTE--------KCASVMTVGTHGTTYGGNPLASAVAGKVLELIN---TPEMLNGVKQRHDWFVER 318 (406)
T ss_pred hhhhh-CCCceEEEEEcH--------HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHH
Confidence 99976 789999999998 888887653 33455789999999999886421 234667778888888888
Q ss_pred hhcCC-CCcccc-CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHH
Q 042445 157 LKEIP-CITCPK-KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGL 232 (246)
Q Consensus 157 L~~~~-~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~ 232 (246)
|+++. ....+. ....|.++++.++... ......+...+.++||.+.+.. ++.+||+++ .+++++++++
T Consensus 319 L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~----~~~~~~~~~~l~~~Gv~v~~~g----~~~lRl~p~~~~t~~~i~~~~ 390 (406)
T PRK12381 319 LNTINARYGLFSEIRGLGLLIGCVLNAEY----AGKAKQISQEAAKAGVMVLIAG----PNVVRFAPALNISEEEITTGL 390 (406)
T ss_pred HHHHHhhCCCEEEEecCeEEEEEEecCch----hhHHHHHHHHHHHCCcEEeeCC----CCEEEEeCCccCCHHHHHHHH
Confidence 87642 111111 2245788888776421 0134556677889999997642 579999987 4899999999
Q ss_pred HHHHHHHHHHhh
Q 042445 233 GRMKAFYDRHAE 244 (246)
Q Consensus 233 ~~l~~~~~~~~~ 244 (246)
++|.++++++..
T Consensus 391 ~~l~~~l~~~~~ 402 (406)
T PRK12381 391 DRFARACERFVS 402 (406)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 126
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.88 E-value=6.3e-21 Score=163.30 Aligned_cols=207 Identities=16% Similarity=0.130 Sum_probs=146.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++|+||+|.+.+ +++|.++|++||+++|+||+|+...++..+.......+- .+..++++||||.|+++| ||
T Consensus 182 ~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~ 255 (402)
T TIGR01821 182 AFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GY 255 (402)
T ss_pred EEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ce
Confidence 78899999999988 889999999999999999999955444322111111111 123588899999999988 99
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
+++++ ++++.+..... ++++.++..+.++.++|+...+ ....++.++++++.+.+.|+++ |+. +.
T Consensus 256 i~~~~--------~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~-~~ 323 (402)
T TIGR01821 256 IAASR--------KLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKE--SQDLRRAHQENVKRLKNLLEAL-GIP-VI 323 (402)
T ss_pred eecCH--------HHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHHHHc-CCC-cC
Confidence 99988 88888876532 2336788888888888873221 1445566678889999999887 565 33
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
.+. +.++.+.++... ...++...++.++||.+.+..++.. .+++|+++.. ++++++++++.|+++++++
T Consensus 324 ~~~-~~i~~i~~~~~~-----~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 324 PNP-SHIVPVIIGDAA-----LCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CCC-CCEEEEEeCCHH-----HHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 444 455555554311 1344555555677999988654332 4789999974 8999999999999988764
No 127
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.88 E-value=5.1e-21 Score=162.85 Aligned_cols=202 Identities=11% Similarity=0.088 Sum_probs=142.6
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC--CCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG--NTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
+..+++||||...+ +++|.++|++||+++|+||+|..+.++ +..+.....+...++++++.|+||.|+++| |
T Consensus 173 i~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G---g 246 (385)
T PRK05958 173 VTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG---A 246 (385)
T ss_pred EEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC---c
Confidence 55567899998755 889999999999999999999866544 222222223344557899999999998888 9
Q ss_pred EEEeeCCCCCcchhhHHHHHHHHh-hh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIFL-NI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP 166 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~~-~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 166 (246)
|+++++ ++.+.+.... .. +.+.+++.+.++.++++.... . .+.++.+.++++.+.+.|+++ ++. +
T Consensus 247 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~-~-~~~~~~~~~~~~~l~~~L~~~-~~~-~ 314 (385)
T PRK05958 247 AVLGSE--------TLIDYLINRARPFIFTTALPPAQAAAARAALRILRR-E-PERRERLAALIARLRAGLRAL-GFQ-L 314 (385)
T ss_pred EEEcCH--------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHc-CCC-c
Confidence 999887 8887776442 21 224566666666666763211 1 566788899999999999887 555 3
Q ss_pred cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEee--cChHHHHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALENGLGRMKAF 238 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~--~~~~~l~~~~~~l~~~ 238 (246)
..+ +|.++++.++... ++.++ .+.|.++||.+.++..+.. ++++|++++ .+++++++++++|+++
T Consensus 315 ~~~-~~~~~~~~~~~~~-----~~~~~-~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 315 MDS-QSAIQPLIVGDNE-----RALAL-AAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred CCC-CCCEEEEEeCCHH-----HHHHH-HHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 444 4566777775421 23344 4456688999998554422 479999998 3899999999999775
No 128
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.88 E-value=3.1e-21 Score=163.71 Aligned_cols=199 Identities=13% Similarity=0.159 Sum_probs=150.1
Q ss_pred cccCCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
++..++|++|...+ .+.++++.++|+++|+++|+||+|.++...+..+.. ...+.+ + +.||||.++ +|+|+|
T Consensus 170 i~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~p--d---i~t~sK~l~-~G~~ig 243 (375)
T PRK04260 170 MLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEP--D---IFTLAKGLA-NGVPVG 243 (375)
T ss_pred EECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCC--C---EEEeccccc-CCcceE
Confidence 66678899998754 578999999999999999999999987665543221 222332 2 448999974 789999
Q ss_pred EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
|+++++ ++.+.+... ...+++.+++.+.++.++|+... +.++++.++..+..++.+.+.+.+.+.+..
T Consensus 244 ~~~~~~--------~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 313 (375)
T PRK04260 244 AMLAKS--------SLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTT-- 313 (375)
T ss_pred EEEEcH--------HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeE--
Confidence 999998 888777543 33345779999999999998654 467778788888888888887776643332
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF 238 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~ 238 (246)
.+..|+++|+++.. +...+.+.+.++||.+.|+. .+.+|+++.. +++++++++++|+++
T Consensus 314 ~~~~g~~~~~~~~~--------~~~~~~~~l~~~Gi~v~~~~----~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 314 VRGLGYMIGIETTA--------DLSQLVEAARDKGLIVLTAG----TNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred EeccceEEEEEecC--------cHHHHHHHHHhCCCEEecCC----CCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 23479999998842 23344566778999998753 5889999963 899999999999775
No 129
>PLN02483 serine palmitoyltransferase
Probab=99.88 E-value=1.4e-20 Score=164.12 Aligned_cols=202 Identities=14% Similarity=0.082 Sum_probs=139.8
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC--CCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN--TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~ 95 (246)
|++|.+. ++++|+++|++||+++|+||+|+....+. .+......+++.+..|+++||||.|+++| ||+++++
T Consensus 251 s~~G~~~---~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G---G~i~~~~ 324 (489)
T PLN02483 251 SMEGELC---KLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG---GYIAGSK 324 (489)
T ss_pred CCCCccc---CHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc---eEEEcCH
Confidence 4555544 59999999999999999999998544432 22223333444556799999999999988 9999988
Q ss_pred CCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHh----hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445 96 PNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILE----KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK 168 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 168 (246)
++++.++.... .....++....++.+.|+ .....+..+.++.++++++.+.+.|+++ |+. +..
T Consensus 325 --------~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~-v~~ 394 (489)
T PLN02483 325 --------ELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFE-VLG 394 (489)
T ss_pred --------HHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCc-ccC
Confidence 99999987522 122334444444455553 1112344556788999999999999998 665 344
Q ss_pred CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
+.++..+++.+.... +..++... |.++||.+.| ..|+. .+++|++++. +++++++++++|.++++.+
T Consensus 395 ~~~sp~~~l~l~~~~-----~~~~~~~~-Ll~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 395 DNDSPVMPIMLYNPA-----KIPAFSRE-CLKQNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred CCCCCEEEEEECCHH-----HHHHHHHH-HHHCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 555667776554321 13345444 5578999997 44422 4789999985 8999999999999987654
No 130
>PLN00144 acetylornithine transaminase
Probab=99.87 E-value=5.6e-21 Score=162.08 Aligned_cols=196 Identities=13% Similarity=0.126 Sum_probs=138.9
Q ss_pred cCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEEEEee
Q 042445 17 VFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTS 94 (246)
Q Consensus 17 ~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~ 94 (246)
+||.|... +.+.+++|.++|++||+++|+||+|.++...+..+.. ...+.++ +.||||.+ .+|+|+||++++
T Consensus 177 q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PD-----i~t~sK~l-~~G~pig~v~~~ 250 (382)
T PLN00144 177 QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPD-----IMTLAKPL-AGGLPIGAVLVT 250 (382)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCC-----EEEecccc-cCCcceEEEEEc
Confidence 47844432 3456999999999999999999999998777653321 3344443 88899996 678999999999
Q ss_pred CCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhh---ch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 95 DPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEK---TE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~---~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+ ++.+.+... ...+++.|++.+.++.+.|+. +. ..++.+..+.+ ++.+.+.+++.|.+.. +.
T Consensus 251 ~--------~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l---~~~l~~~~~~~~~~~~-vr- 317 (382)
T PLN00144 251 E--------KVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYL---RELLRRKLGGNPHVKE-VR- 317 (382)
T ss_pred H--------HHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHH---HHHHHHHHhhCCCcee-ee-
Confidence 8 888877543 334558899999999955542 22 23344444433 3444555555554432 22
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
..|+++|+++.. ....+...+.++||.+.|+.. .+.+|++++. +++++++++++|.+++.++
T Consensus 318 g~G~~~~l~l~~--------~~~~~~~~~~~~Gv~i~~~~~---~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 318 GVGLLVGIQLDV--------PAGPLVDACRDSGLLVLTAGK---GDVVRLVPPLVISEAELEQAVEILADCLPAL 381 (382)
T ss_pred cCceEEEEEecC--------ccHHHHHHHHHCCeEEeecCC---CCEEEEeCCCccCHHHHHHHHHHHHHHHHhc
Confidence 379999999842 223345567799999998732 5899999885 8899999999999998764
No 131
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.87 E-value=8.4e-21 Score=160.73 Aligned_cols=205 Identities=12% Similarity=0.034 Sum_probs=138.6
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++|+||||...+ +++|.++|+++|+++|+||+|..+..+. ..... +..++++|+||.|+ +|.|+||+
T Consensus 151 ~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~~----~~~~~---~~di~v~s~sK~~~-~~g~~G~l 219 (370)
T TIGR02539 151 LLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMPV----SAKEI---GADFIVGSGHKSMA-ASGPCGVL 219 (370)
T ss_pred EEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcCC----CHHHc---CCCEEEeeCccccc-CCCCEEEE
Confidence 78899999999776 7788889999999999999999743211 11111 23367799999987 56689999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhc---------CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNIS---------SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC 162 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 162 (246)
++++ ++++.++.....+ .......+.++..++.. ...++++..+.++. ++.+.+.|+++ |
T Consensus 220 ~~~~--------~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~l~~~~~~~~~-~~~l~~~L~~~-g 288 (370)
T TIGR02539 220 GMSE--------EWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH-VVERVKRWDEEVKK-TRWFVAELEDI-G 288 (370)
T ss_pred EECH--------HHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHhC-C
Confidence 9998 8888887764321 01111245555555542 14455555555444 45899999987 5
Q ss_pred Cccc-cCCCCceEEEEEeccccc--cCCCChHHHHHHHHHhcCeE-EecCCCcCCCCeEEEEee-cChHHHHHHHHHHHH
Q 042445 163 ITCP-KKPEGSMFVMVKLNYSLL--EGINSDMEFALKLAKEESVI-VLPGITVGLKDWLRITFA-VEPSALENGLGRMKA 237 (246)
Q Consensus 163 ~~~~-~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~gi~-v~pg~~f~~~~~iRls~~-~~~~~l~~~~~~l~~ 237 (246)
+..+ ..|+.++|++++++.... .+.......+.+.|.++||. ++++ .++++|+++. .++++++++++.|++
T Consensus 289 ~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~----~~~~iRis~~~~t~e~i~~l~~~L~~ 364 (370)
T TIGR02539 289 FIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSG----QTKYFKLSVYGLTKEQVEYVVDSFEE 364 (370)
T ss_pred cEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCC----cceEEEEEecCCCHHHHHHHHHHHHH
Confidence 6532 356788999887752100 00001234567778889997 5543 3679999973 399999999999998
Q ss_pred HHHHH
Q 042445 238 FYDRH 242 (246)
Q Consensus 238 ~~~~~ 242 (246)
+++++
T Consensus 365 ~~~~~ 369 (370)
T TIGR02539 365 IVEEY 369 (370)
T ss_pred HHHhc
Confidence 87654
No 132
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.87 E-value=2.2e-20 Score=159.92 Aligned_cols=213 Identities=15% Similarity=0.106 Sum_probs=148.9
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++||||||.+++ +++|.++|+++|+++|+|++|+...+. ..+..+ +..+++.|+
T Consensus 151 ~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~----~~~~~~---~~d~~~~s~ 220 (401)
T PRK10874 151 DLLPELITPRTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHFP----ADVQAL---DIDFYAFSG 220 (401)
T ss_pred HHHHHhcCcCcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCccccccc----CCchhc---CCCEEEEec
Confidence 4555666554 78999999999987 778999999999999999999743322 112222 233778999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh---------------------hh-cCCCCchHHHHHHHHHhhch
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---------------------NI-SSDPATFIQGAVPQILEKTE 135 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~---------------------~~-~~~~~~~~q~~~~~~l~~~~ 135 (246)
+|.||.+| +||+++++ ++++.+.... .+ ..+.+...+.++..+++...
T Consensus 221 ~K~~gp~G--~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~ 290 (401)
T PRK10874 221 HKLYGPTG--IGVLYGKS--------ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLA 290 (401)
T ss_pred ccccCCCc--cEEEEEch--------HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHH
Confidence 99988777 59999887 7766653211 01 11345556667777666322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC---
Q 042445 136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--- 212 (246)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--- 212 (246)
+....+.+++.++.++.+.+.|++++++..+..+ .+.++++.++.. +. +.+.+.|.++||.+.+|..|.
T Consensus 291 ~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~-~~~i~~~~~~~~------~~-~~~~~~L~~~gI~v~~g~~~~~~~ 362 (401)
T PRK10874 291 DIDINQAESWSRSLATLAEDALAKLPGFRSFRCQ-DSSLLAFDFAGV------HH-SDLVTLLAEYGIALRAGQHCAQPL 362 (401)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC-CCcEEEEEECCc------CH-HHHHHHHHHCCcEEeccccchHHH
Confidence 3334556777788888999999888887643333 444555556432 23 445567788999999988764
Q ss_pred -----CCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 213 -----LKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 213 -----~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
..+++|+|++. ++++++.+++.|+++++++
T Consensus 363 ~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 363 LAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred HHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 36899999995 8899999999999887653
No 133
>PRK07049 methionine gamma-lyase; Validated
Probab=99.87 E-value=2e-20 Score=160.55 Aligned_cols=137 Identities=11% Similarity=0.071 Sum_probs=108.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHH---cCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccc-cCCce
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKK---LGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGI-VPGLR 87 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~---~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~g~r 87 (246)
++++||||||.+++.+++.+|++.|.. +++++|+||+|....... ++ .....++++|+||.++ .+|+|
T Consensus 179 ~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~----pl----~~g~divv~S~SK~~gG~~glr 250 (427)
T PRK07049 179 LIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK----PL----EHGADLSVYSLTKYVGGHSDLV 250 (427)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCC----cc----ccCCCEEEEcCceeecCCCCcE
Confidence 889999999999999988888888654 689999999987654321 22 1124588889999999 49999
Q ss_pred EEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445 88 LGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP 166 (246)
Q Consensus 88 ~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 166 (246)
+||+++++ ++++.++.... .+..++++.+.++.+.|+. +..+.++..++++.+.+.|+++|++..+
T Consensus 251 ~G~vv~~~--------~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t-----l~~R~~~~~~~a~~la~~L~~~p~V~~v 317 (427)
T PRK07049 251 AGAVLGRK--------ALIRQVRALRSAIGTQLDPHSCWMLGRSLET-----LVLRMERANRNARAVAEFLRDHPKVEKL 317 (427)
T ss_pred EEEEECCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh-----HHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 99999887 88888887654 3446899999998888863 5555666699999999999998877654
Q ss_pred cCC
Q 042445 167 KKP 169 (246)
Q Consensus 167 ~~~ 169 (246)
..|
T Consensus 318 ~yp 320 (427)
T PRK07049 318 HYL 320 (427)
T ss_pred ECC
Confidence 444
No 134
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.87 E-value=1.3e-20 Score=161.26 Aligned_cols=207 Identities=15% Similarity=0.149 Sum_probs=140.0
Q ss_pred cccCCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++..++||||.+++ .+++++|.++|++||+++|+||+|.++.+.+..+. ....+.... +.++||.++.+++|+||
T Consensus 183 ~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~-~~~~~~~pd---~~~~sK~l~~g~~~ig~ 258 (400)
T PTZ00125 183 IVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLA-HDHEGVKPD---IVLLGKALSGGLYPISA 258 (400)
T ss_pred EEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhH-HHhcCCCCC---EEEEcccccCCCcCcEE
Confidence 55666899999886 46799999999999999999999988766654321 111111112 23478998765579999
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCcc
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITC 165 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~ 165 (246)
+++++ ++++.+... ...+++.+++.+.++.+.++...+. ...+..+++.+.+.+.|++ .+.+.
T Consensus 259 v~~~~--------~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~- 326 (400)
T PTZ00125 259 VLAND--------DVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEE---KLAENAQRLGEVFRDGLKELLKKSPWVK- 326 (400)
T ss_pred EEEcH--------HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhcCCCeE-
Confidence 99998 888887654 2334578999999988877642221 1223334444555555544 23222
Q ss_pred ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445 166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~ 243 (246)
...+ .|.+.++.++... + .+..++. ..|.++||.+.|+. .+++||++. .+++++++++++|.++++++.
T Consensus 327 ~~~~-~g~~~~v~~~~~~--~-~~~~~~~-~~l~~~Gv~v~~~~----~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 327 EIRG-KGLLNAIVFDHSD--G-VNAWDLC-LKLKENGLLAKPTH----DNIIRFAPPLVITKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred EEec-ccEEEEEEEccCc--c-hHHHHHH-HHHHHCCeEEeecC----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence 2333 5677777776421 0 0234444 44568899999864 689999965 599999999999999998764
No 135
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.87 E-value=3.2e-20 Score=158.53 Aligned_cols=206 Identities=17% Similarity=0.141 Sum_probs=137.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++++||||.+.+ +++|.++|++||+++|+||+|.....+..+.......+. .+..++++|+||.+ +|+|+||
T Consensus 175 ~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l--~g~r~G~ 249 (393)
T TIGR01822 175 ATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKAL--GGASGGF 249 (393)
T ss_pred EEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHh--hCCCcEE
Confidence 55567899999976 899999999999999999999744333221111111111 23458999999985 4679999
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-hhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-LNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
+++++ ++++.+... ..... +.++..+.++..+++. ....++.++.++++++.+.+.|++. |+.. .
T Consensus 250 ~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~-~ 317 (393)
T TIGR01822 250 TTARK--------EVVELLRQRSRPYLFSNSLPPAVVGASIKVLEM--LEASNELRDRLWANTRYFRERMEAA-GFDI-K 317 (393)
T ss_pred EEeCH--------HHHHHHHHhCccceecCCCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHc-CCCC-C
Confidence 99988 888888764 22211 2344445555555542 1235667888999999999999876 6653 3
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
.+.++ ++.+.++... +..++.. .|.++||.+. +..|.. ..++|++++. +++++++++++|.+++++
T Consensus 318 ~~~~~-~~~i~~~~~~-----~~~~l~~-~L~~~gI~v~-~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 318 PADHP-IIPVMLYDAV-----LAQRFAR-RLLEEGIYVT-GFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred CCCCC-EEEEEeCCHH-----HHHHHHH-HHHHCCeeEe-eeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 33443 4444444321 2344444 4557799987 444431 3579999884 799999999999998765
Q ss_pred H
Q 042445 242 H 242 (246)
Q Consensus 242 ~ 242 (246)
.
T Consensus 390 ~ 390 (393)
T TIGR01822 390 L 390 (393)
T ss_pred h
Confidence 4
No 136
>PRK10534 L-threonine aldolase; Provisional
Probab=99.87 E-value=4.7e-21 Score=160.14 Aligned_cols=193 Identities=13% Similarity=0.124 Sum_probs=131.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE-E
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG-W 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G-~ 90 (246)
+++|| |||.+++.+++++|+++|+++++++++||+|........+ .+...+....+.++ .||||.|+++ +| |
T Consensus 134 ~l~np--~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~-~~~~~~~~~~~~~~-~s~SK~~~~~---~G~~ 206 (333)
T PRK10534 134 SLENT--HNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYG-CELKEITQYCDSFT-ICLSKGLGTP---VGSL 206 (333)
T ss_pred EEecC--CCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcC-CCHHHHHhcCCEEE-EEeEcCCCCc---ccce
Confidence 66655 4699999999999999999999999999998732211001 11112212212233 3899998765 68 6
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhhcC---CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNISS---DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
+++++ ++++.++.....+. ..+.+.|.++...++. .. +..+..+++++.+.+.|+++ |+. +.
T Consensus 207 ~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~----~~-~~~~~~~~~r~~l~~~L~~~-g~~-~~ 271 (333)
T PRK10534 207 LVGNR--------DYIKRARRWRKMTGGGMRQAGILAAAGLYALKH----NV-ARLQEDHDNAAWLAEQLREA-GAD-VM 271 (333)
T ss_pred EEcCH--------HHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh----hH-HHHHHHHHHHHHHHHHHHhC-CCc-cC
Confidence 77777 89998887755431 2233556665555542 12 22223455678899999987 676 34
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD 240 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~ 240 (246)
+| +++|+|++++.. +.+.+.++|+++||.++|+. ++|++.. .+.+++++++++|.+++.
T Consensus 272 ~~-~~nfv~~~~~~~-------~~~~~~~~l~~~gi~v~~~~------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 272 RQ-DTNMLFVRVGEE-------QAAALGEYMRERNVLINASP------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred CC-CceEEEEECCch-------hHHHHHHHHHHcCeeecCCc------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 44 799999988631 34455788999999999864 4788775 489999999999987764
No 137
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.86 E-value=9.5e-21 Score=162.73 Aligned_cols=205 Identities=19% Similarity=0.126 Sum_probs=135.6
Q ss_pred CCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCC
Q 042445 19 HVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPN 97 (246)
Q Consensus 19 PtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~ 97 (246)
-+|..+ +.+++++|.++|++||+++|+||+|.++.+.+. +.+....+ ....+.++||.++ +|+|+||+++++
T Consensus 209 ~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~~~~~---~~pDi~~lsK~l~-~G~pig~v~~~~-- 281 (420)
T TIGR00700 209 EGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFACEHEG---PEPDLITTAKSLA-DGLPLSGVTGRA-- 281 (420)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHHhhcC---CCCCEEEeecccc-CCcceEEEEecH--
Confidence 356655 556699999999999999999999999987664 22222222 2233556999986 899999999998
Q ss_pred CCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEE
Q 042445 98 GILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFV 175 (246)
Q Consensus 98 ~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~ 175 (246)
++++.+... ...+++.|+++|+++.+.++... +...+..++.-...++.+.+..+++|.+.. +.+. |.++
T Consensus 282 ------~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~-vrg~-G~~~ 353 (420)
T TIGR00700 282 ------EIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGD-VRGL-GAMI 353 (420)
T ss_pred ------HHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCEEE-eecc-ceEE
Confidence 888877543 33455889999999988776322 223333333322233333333333554442 3444 7888
Q ss_pred EEEeccccccCC-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445 176 MVKLNYSLLEGI-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYD 240 (246)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~ 240 (246)
|+++....-... ......+...+.++||.+.|+..| .+++||+++. +++++++++++|.+++.
T Consensus 354 ~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f--~~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 354 AVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF--GNIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred EEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC--CCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 887742210000 011233444457899999998766 4899999873 89999999999999874
No 138
>PRK07505 hypothetical protein; Provisional
Probab=99.86 E-value=3.5e-20 Score=158.69 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=138.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCC-CccccccC--CcccEEEE
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTP-FVSMGVFG--SIVPLLTL 74 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~--~~~~~i~~ 74 (246)
+.+++.+.++ ++++|+||||.+++ +++|.++|+++|+++|+||+|+...++..+ ......++ ..++++++
T Consensus 170 ~~l~~~~~~~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~ 246 (402)
T PRK07505 170 DALEDICKTNKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIA 246 (402)
T ss_pred HHHHHHHhcCCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEE
Confidence 3445544432 88999999999998 788889999999999999999654443211 11112222 35678999
Q ss_pred cccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 042445 75 GSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151 (246)
Q Consensus 75 ~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 151 (246)
.|+||.|+++| ||++++++ ++++.+..... .++ +++++++.++.+.++...+.++.+.++.++++.+
T Consensus 247 ~s~sK~~~~~G---g~~~~~~~-------~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~ 316 (402)
T PRK07505 247 ASLGKAFGASG---GVIMLGDA-------EQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIA 316 (402)
T ss_pred EechhhhhccC---eEEEeCCH-------HHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 99999999887 89876442 77887776533 222 3455677777777663223444555566666655
Q ss_pred HHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChH
Q 042445 152 KCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPS 226 (246)
Q Consensus 152 ~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~ 226 (246)
.+...+... ....+.+..++.++... ....+.+.|.++||.+.++.++.. .++|||++.. +++
T Consensus 317 ~~~~~~~~~------~~g~~~~i~~~~~~~~~------~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~e 384 (402)
T PRK07505 317 LFDSLIPTE------QSGSFLPIRLIYIGDED------TAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTND 384 (402)
T ss_pred HHHHHHHhc------CCCCCCCEEEEEeCCHH------HHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHH
Confidence 443332111 01122222233333211 234445566689999998754432 3689999994 999
Q ss_pred HHHHHHHHHHHHHHH
Q 042445 227 ALENGLGRMKAFYDR 241 (246)
Q Consensus 227 ~l~~~~~~l~~~~~~ 241 (246)
+++++++.|.+++++
T Consensus 385 ei~~~~~~l~~~l~~ 399 (402)
T PRK07505 385 EIKRLCSLLKEILDE 399 (402)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998865
No 139
>PLN02721 threonine aldolase
Probab=99.86 E-value=4.2e-20 Score=155.54 Aligned_cols=205 Identities=16% Similarity=0.094 Sum_probs=131.7
Q ss_pred cc-cCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FS-DFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~-~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++ +.||||||.+++.+++++|.++|+++|+++|+|++|........+. ....+..... .++.|+||.|+++ +||
T Consensus 142 ~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~l~~~---~G~ 216 (353)
T PLN02721 142 CLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV-PVHRLVKAAD-SVSVCLSKGLGAP---VGS 216 (353)
T ss_pred EEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC-CHHHHhhhCC-EEEEecccccCCc---eee
Confidence 44 4468999999999999999999999999999999886332110011 1111111112 3355799998654 576
Q ss_pred -EEeeCCCCCcchhhHHHHHHHHhhhc-CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-cc
Q 042445 91 -LVTSDPNGILQDSGIVDSIKIFLNIS-SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC-PK 167 (246)
Q Consensus 91 -i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~ 167 (246)
+++++ ++++.+....... ..++..++.++..+.. .+.+.++.++ ..++++.+.+.|++++++.. +.
T Consensus 217 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~-~~~~~~~l~~~L~~~~~~~~~~~ 285 (353)
T PLN02721 217 VIVGSK--------SFIRKAKRLRKTLGGGMRQVGVLAAAALVA--LQENVPKLED-DHKKAKLLAEGLNQIKGLRVNVA 285 (353)
T ss_pred EEecCH--------HHHHhHHHHHHhcCCCeehhHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHhCCCcEEecC
Confidence 55555 8888776654322 1233333333322222 2333444333 35678899999998877642 33
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
.| .++++|++++... +. +.+.+.+.|.++||.+.|+. .+++|++++. +++++++++++|++++..
T Consensus 286 ~~-~~~~~~~~~~~~~--~~--~~~~~~~~L~~~gi~v~~~~----~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 286 AV-ETNIVYFDITDGS--RI--TAEKLCKSLEEHGVLLMPGN----SSRIRVVTHHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred Cc-cceEEEEEccCCc--cc--cHHHHHHHHHhCCcEEecCC----CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence 34 4567888886420 01 33445556679999999975 6799999973 899999999999987653
No 140
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.86 E-value=5.2e-20 Score=157.49 Aligned_cols=213 Identities=14% Similarity=0.084 Sum_probs=145.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++||||||.+++ +++|.++|+++|+++++|++|+.+... ..+...+ ..+++.|.
T Consensus 148 ~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~----~~~~~~~---~d~~~~s~ 217 (398)
T TIGR03392 148 RQLPELLTPRTRILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHGP----PDVQALD---IDFYAFSG 217 (398)
T ss_pred HHHHHHhccCceEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCC----CChhhcC---CCEEEEec
Confidence 4455556554 77899999999987 778999999999999999999754322 1122222 23677888
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh---------------------hh-cCCCCchHHHHHHHHHhhch
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---------------------NI-SSDPATFIQGAVPQILEKTE 135 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~---------------------~~-~~~~~~~~q~~~~~~l~~~~ 135 (246)
+|.++.+| +||+++++ ++++.+.... .+ ..+.+.....++..+++.-.
T Consensus 218 ~K~~gp~G--~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~ 287 (398)
T TIGR03392 218 HKLYGPTG--IGVLYGKT--------ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLT 287 (398)
T ss_pred ccccCCCc--eEEEEEcH--------HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHH
Confidence 89887666 89999987 7666553211 01 11334445556666665322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC---
Q 042445 136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG--- 212 (246)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--- 212 (246)
+...++.+++..+.++.+.+.|++++++..+..+ .+.++++.++.. +.. .+...|.++||.+.+|..|.
T Consensus 288 ~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~-~~~i~~~~~~~~------~~~-~l~~~L~~~gI~v~~g~~~~~~~ 359 (398)
T TIGR03392 288 DIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCP-GSSLLAFDFAGV------HHS-DLAALLAESGIALRAGQHCAQPL 359 (398)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-CCcEEEEEeCCc------CHH-HHHHHHHhCCEEEecCccchHHH
Confidence 3334566777788888889999888887643233 344555555421 234 44556788999999998764
Q ss_pred -----CCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 213 -----LKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 213 -----~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
.++++|+|+.. ++++++.+++.|+++++++
T Consensus 360 ~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 360 MAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred HHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 26899999984 8999999999999988754
No 141
>PRK07179 hypothetical protein; Provisional
Probab=99.86 E-value=6.7e-20 Score=157.20 Aligned_cols=215 Identities=15% Similarity=0.120 Sum_probs=144.0
Q ss_pred hhhhhhhcc---c--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc-EEEEc
Q 042445 2 ELINQDITR---E--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLG 75 (246)
Q Consensus 2 e~~~~~~~~---~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~ 75 (246)
+.+++.+++ . ++++++||||.+.+ +++|.++|+++|+++|+||+|+...++..+...+..++.... .+++.
T Consensus 171 ~~l~~~l~~~~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~ 247 (407)
T PRK07179 171 DHLRRQIERHGPGIIVVDSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITA 247 (407)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEe
Confidence 345555543 2 67889999999999 778999999999999999999865544322222223332222 48889
Q ss_pred ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445 76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK 152 (246)
Q Consensus 76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (246)
|+||.++. |+||+++++ ++++.+..... ...+.++....++.++++. .....+.++.++++++.
T Consensus 248 S~sK~~g~---~~G~l~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~--~~~~~~~~~~l~~~~~~ 314 (407)
T PRK07179 248 SLAKAFAG---RAGIITCPR--------ELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEV--IESADDRRARLHANARF 314 (407)
T ss_pred echHhhhc---cCeEEEeCH--------HHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHH
Confidence 99999853 689999987 87777765432 1212233333334444442 22335677889999999
Q ss_pred HHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC---CCCeEEEEeec--ChHH
Q 042445 153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG---LKDWLRITFAV--EPSA 227 (246)
Q Consensus 153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~---~~~~iRls~~~--~~~~ 227 (246)
+.+.|+++ |+.. . ..+.++++.++... +.+.+.+.|.++||.+..-.... ..+++||+++. ++++
T Consensus 315 l~~~L~~~-g~~v-~--~~~~i~~l~~~~~~------~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~ed 384 (407)
T PRK07179 315 LREGLSEL-GYNI-R--SESQIIALETGSER------NTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASD 384 (407)
T ss_pred HHHHHHHc-CCCC-C--CCCCEEEEEeCCHH------HHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHH
Confidence 99999887 6653 2 33567777664321 44556677888999743211111 15799999995 8999
Q ss_pred HHHHHHHHHHHHHHH
Q 042445 228 LENGLGRMKAFYDRH 242 (246)
Q Consensus 228 l~~~~~~l~~~~~~~ 242 (246)
++++++.|++++++.
T Consensus 385 i~~~~~~l~~~~~~~ 399 (407)
T PRK07179 385 LDRVLEVCREARDEV 399 (407)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
No 142
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.86 E-value=7.9e-20 Score=156.21 Aligned_cols=206 Identities=18% Similarity=0.089 Sum_probs=136.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCC--CccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTP--FVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
++.+.+||||.. +++++|.++|++||+++|+||+|....++..+ ......+. .+..++++|+||.++ |+|+|
T Consensus 179 ~~~~v~~~~G~~---~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~~i~~~S~sK~~~--g~r~G 252 (397)
T PRK06939 179 ATDGVFSMDGDI---APLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVM-DRVDIITGTLGKALG--GASGG 252 (397)
T ss_pred EEecCcCCCCCc---CCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCC-CCCcEEEEECHHHhC--ccCce
Confidence 433346899975 45899999999999999999999643322211 11111221 234699999999973 55899
Q ss_pred EEEeeCCCCCcchhhHHHHHHHHhh-h--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIFLN-I--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP 166 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 166 (246)
|+++++ ++++.+..... . ....++..+.++.++++.. ....+.++.++++++.+.+.|+++ ++. .
T Consensus 253 ~v~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~ 320 (397)
T PRK06939 253 YTAGRK--------EVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL--EESDELRDRLWENARYFREGMTAA-GFT-L 320 (397)
T ss_pred EEEeCH--------HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCC-c
Confidence 999988 88888876422 1 1123344455555555421 123567788999999999999887 555 3
Q ss_pred cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFA--VEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~--~~~~~l~~~~~~l~~~~~~ 241 (246)
..+.++++. +.++... ++.+++.. |.++||.+.++.++.. .+++|++++ .+++++++++++|.+++++
T Consensus 321 ~~~~~~~~~-~~~~~~~-----~~~~~~~~-L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 321 GPGEHPIIP-VMLGDAK-----LAQEFADR-LLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred CCCCCCEEE-EEECCHH-----HHHHHHHH-HHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 445555553 3344221 24455554 5566999986543211 468999986 3899999999999999876
Q ss_pred H
Q 042445 242 H 242 (246)
Q Consensus 242 ~ 242 (246)
.
T Consensus 394 ~ 394 (397)
T PRK06939 394 L 394 (397)
T ss_pred h
Confidence 4
No 143
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.86 E-value=1.4e-19 Score=154.19 Aligned_cols=204 Identities=14% Similarity=0.138 Sum_probs=140.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccc--cccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSM--GVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
+.++++||||.+.+ +++|.++|++||+++|+||+|..+.++..+.... ..+. .+.++++.||||.|+++| |
T Consensus 168 ~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g---G 240 (385)
T TIGR01825 168 VTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG---G 240 (385)
T ss_pred EEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC---C
Confidence 55666899999877 7889999999999999999998776542211111 1222 457899999999998777 9
Q ss_pred EEEeeCCCCCcchhhHHHHHHHHhh-h--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIFLN-I--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCP 166 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 166 (246)
|+++++ ++++.+..... . +...++..+.++.++++... .. .+..+.+.++++.+.+.|+++ ++. +
T Consensus 241 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~-~~~~~~~~~~~~~l~~~L~~~-g~~-~ 308 (385)
T TIGR01825 241 YAAGHK--------ELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQ-RS-PELMERLWDNTRFFKAGLGKL-GYD-T 308 (385)
T ss_pred EEecCH--------HHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHh-cC-HHHHHHHHHHHHHHHHHHHHc-CCC-C
Confidence 999887 88888876532 2 22346677778777776321 11 235566778889999999886 666 3
Q ss_pred cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFA--VEPSALENGLGRMKAFYD 240 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~--~~~~~l~~~~~~l~~~~~ 240 (246)
..|++. ++.+.++... ++.+++.. |.++||.+.+ ..|+. .+++|+++. .+++++++++++|+++++
T Consensus 309 ~~~~~~-~~~~~~~~~~-----~~~~~~~~-L~~~gi~v~~-~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~ 380 (385)
T TIGR01825 309 GGSETP-ITPVVIGDEK-----AAQEFSRR-LFDEGIFAQS-IVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGK 380 (385)
T ss_pred CCCCCC-EEEEEECCHH-----HHHHHHHH-HHHCCcEEcc-cCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 445544 4444444211 13445454 4556998854 33332 478999886 499999999999999986
Q ss_pred HH
Q 042445 241 RH 242 (246)
Q Consensus 241 ~~ 242 (246)
++
T Consensus 381 ~~ 382 (385)
T TIGR01825 381 EL 382 (385)
T ss_pred Hh
Confidence 54
No 144
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.86 E-value=5.1e-20 Score=157.68 Aligned_cols=214 Identities=12% Similarity=0.096 Sum_probs=145.5
Q ss_pred hhhhhhhccc----cccCCcCCCccCCCh-hhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSG-SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~-~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
+.+++.+.++ ++++|+||+|.++++ +++++|.++|++||+++|+||+|.++.+.+..+ .....+....+++
T Consensus 178 ~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~-~~~~~g~~~D~~~--- 253 (401)
T PRK00854 178 EALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLL-AEEHEGIEADVTL--- 253 (401)
T ss_pred HHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHh-HHhhcCCCCCEEE---
Confidence 3455555443 888999999999985 569999999999999999999999776655322 1111121112222
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+||.++...+|+||+++++ ++++.+... ...+++.+++.+.++.+.|+...+ ....+.++++.+.+.+
T Consensus 254 ~~K~l~gg~~~ig~v~~~~--------~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~ 322 (401)
T PRK00854 254 IGKALSGGFYPVSAVLSNS--------EVLGVLKPGQHGSTFGGNPLACAVARAALKVLTE---EGMIENAAEMGAYFLE 322 (401)
T ss_pred ecccccCCccCeEEEEEcH--------HHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHH
Confidence 4699865558999999998 888877643 333446799999999999974221 2356777888888999
Q ss_pred HhhcCCCCc-cccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHH
Q 042445 156 RLKEIPCIT-CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGL 232 (246)
Q Consensus 156 ~L~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~ 232 (246)
.|++++... ....+.|.++. +.+.... .+..++ .+.|.++||.+.+.. .+++|+++. .+++++++++
T Consensus 323 ~L~~~~~~~~~~~~g~g~~~~-i~~~~~~----~~~~~~-~~~L~~~GV~v~~~~----~~~lR~~p~~~~t~e~i~~~i 392 (401)
T PRK00854 323 GLRSIRSNIVREVRGRGLMLA-VELEPEA----GGARQY-CEALKERGLLAKDTH----DHTIRLAPPLVITREQVDWAL 392 (401)
T ss_pred HHHhhccCceEEEeccceEEE-EEEecCc----hhHHHH-HHHHHHCCeEEecCC----CCEEEEeCCcccCHHHHHHHH
Confidence 888763211 11234444444 3343211 023444 455667899987632 579999975 4999999999
Q ss_pred HHHHHHHH
Q 042445 233 GRMKAFYD 240 (246)
Q Consensus 233 ~~l~~~~~ 240 (246)
++|++++.
T Consensus 393 ~~l~~~l~ 400 (401)
T PRK00854 393 EQIAKVLA 400 (401)
T ss_pred HHHHHHhh
Confidence 99998864
No 145
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.85 E-value=6.1e-20 Score=158.98 Aligned_cols=213 Identities=17% Similarity=0.158 Sum_probs=142.1
Q ss_pred cccCCcCCC-cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHV-GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPt-G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
++.-|-+.. |. +++.+++++|.++|++||+++|+||+|.++.+.+..+ +...++.... +.|+||.++ +|+|+|
T Consensus 223 vi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~-a~~~~~v~pD---i~t~sK~l~-~G~pig 297 (451)
T PRK06918 223 VVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYF-AIEHFDVVPD---LITVSKSLG-AGVPIS 297 (451)
T ss_pred EEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCcee-hhHhcCCCCC---EEeeehhhc-CCCccE
Confidence 666665554 55 4456679999999999999999999999998776432 3344432222 558999986 899999
Q ss_pred EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH----HHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE----EFFSKIIDILRETADKCCDRLKEIPCIT 164 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 164 (246)
|+++++ ++++.+... ...+++.|+++|.++.+.++...+ .+..+..+.++++.+.+. ++.+.+.
T Consensus 298 ~v~~~~--------~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~---~~~~~~~ 366 (451)
T PRK06918 298 GVIGRK--------EIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMK---NKYNCIG 366 (451)
T ss_pred EEEEcH--------HHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---hhCCCce
Confidence 999998 888877543 334558899999997777763322 233333333333332222 2343333
Q ss_pred cccCCCCceEEEEEecccc--ccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445 165 CPKKPEGSMFVMVKLNYSL--LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD 240 (246)
Q Consensus 165 ~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~ 240 (246)
.+.+.|+++.|....+.. .++ ....+.+.+.+.++||.+.|+..| .+++||+++ .+++++++++++|.++++
T Consensus 367 -~vrg~G~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~Gvlv~~~~~~--~~~lrl~p~l~~t~~~id~~l~~l~~~l~ 442 (451)
T PRK06918 367 -DVRGLGAMCAFELVQDRKTKEPD-KTLTANICKEANKRGLLLLSAGTY--GNVIRVLMPLVITDEQLEEGLTIIEESLQ 442 (451)
T ss_pred -eeccceeEEEEEEccCCCcCCCc-HHHHHHHHHHHHHCCeEEeecCCC--CCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence 245677777776432210 000 012334455567899999997655 488999986 489999999999999998
Q ss_pred HHhh
Q 042445 241 RHAE 244 (246)
Q Consensus 241 ~~~~ 244 (246)
+...
T Consensus 443 ~~~~ 446 (451)
T PRK06918 443 ACYE 446 (451)
T ss_pred HHHH
Confidence 7643
No 146
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.85 E-value=2.4e-19 Score=150.64 Aligned_cols=203 Identities=15% Similarity=0.090 Sum_probs=139.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCC-CccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTP-FVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++|+||||...+ +++|.++|+++|+++|+|++|....+...+ ..........+..++++|+||.++.+| ||
T Consensus 137 ~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~ 210 (349)
T cd06454 137 VTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG---GY 210 (349)
T ss_pred EEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC---CE
Confidence 77788999998866 789999999999999999999854432211 111111223456799999999998766 99
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh-h--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN-I--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
+++++ ++++.+..... . +...++..+.++...++.... .+..++.++++++.+.+.|+++ ++.. .
T Consensus 211 i~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~-~ 278 (349)
T cd06454 211 IAGSK--------ELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL-GFPV-G 278 (349)
T ss_pred EECCH--------HHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCcc-c
Confidence 99887 88887766532 2 225667777777777763222 4567788899999999999887 5553 3
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAF 238 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~ 238 (246)
.+.++++.++.++... +.+.+.+.|.++||.+.++.+... .+++|++++. +++++++++++|+++
T Consensus 279 ~~~~~~~~~~~~~~~~------~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 279 GSPSHIIPPLIGDDPA------KAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred CCCCCcEEEEeCCChH------HHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 3334444444333211 334445556677999998643221 5799999984 899999999998764
No 147
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.85 E-value=4e-20 Score=158.85 Aligned_cols=207 Identities=17% Similarity=0.188 Sum_probs=138.3
Q ss_pred cccCCc-CCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQV-FHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~-NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
++.+|+ |++|..+ +.+++++|.++|++||+++|+||+|+++...+... .....+.. ..+.|+||.++. |+|+|
T Consensus 195 vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~-~~~~~~~~---~d~~t~sK~l~~-g~~~g 269 (413)
T cd00610 195 VIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMF-AFEHFGVE---PDIVTLGKGLGG-GLPLG 269 (413)
T ss_pred EEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-hHhhcCCC---CCeEEEcccccC-ccccE
Confidence 555554 5569866 67789999999999999999999999875444321 11112211 124589999876 79999
Q ss_pred EEEeeCCCCCcchhhHHHHH--HHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC---CC
Q 042445 90 WLVTSDPNGILQDSGIVDSI--KIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP---CI 163 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l--~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~ 163 (246)
|+++++ ++++.+ ... ...+++.+++.+.++.++++.... ....+.++++.+.+.+.|+++. ++
T Consensus 270 ~~~~~~--------~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~ 338 (413)
T cd00610 270 AVLGRE--------EIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLRELAEKHPL 338 (413)
T ss_pred EEEEcH--------HHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 999987 888886 222 223447889999988888863221 3455666677777777776531 11
Q ss_pred ccccCCCCceEEEEEeccccccC-C-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445 164 TCPKKPEGSMFVMVKLNYSLLEG-I-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFY 239 (246)
Q Consensus 164 ~~~~~~~~g~~~~~~~~~~~~~~-~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~ 239 (246)
. ......|.++++.++...... . ......+...|.++||.+.|+. .+.+|++++. +++++++++++|.+++
T Consensus 339 ~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~----~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 339 V-GDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG----GNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred E-EEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC----CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 1 112345777887776431000 0 0133445566778999999975 6789998884 8899999999998753
No 148
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.85 E-value=2.3e-20 Score=151.24 Aligned_cols=202 Identities=20% Similarity=0.184 Sum_probs=155.1
Q ss_pred CCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCccccccCC-cccEEEEcccccccccCCceEEEEE
Q 042445 15 FQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGWLV 92 (246)
Q Consensus 15 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~i~ 92 (246)
..|||||..++.++|++|+++.++.+.+.+.|-+|.+|.-+- .+...+..+.. ...+++..|+||.|++.|-|+|.+.
T Consensus 180 CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~ 259 (396)
T COG1448 180 CCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALS 259 (396)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeE
Confidence 347999999999999999999999999999999999987552 12223333322 2238999999999999999999953
Q ss_pred --eeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-----HHHHHHHHHHHHHHHHHHHHHhhcC-C--
Q 042445 93 --TSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-----EEFFSKIIDILRETADKCCDRLKEI-P-- 161 (246)
Q Consensus 93 --~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-~-- 161 (246)
+.+.+... .+...++.. +..+++++.-+...++.+|+++. +..+..++.++.+.|..+.+.|++. +
T Consensus 260 vva~~~~~a~---~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~ 336 (396)
T COG1448 260 VVAEDAEEAD---RVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPR 336 (396)
T ss_pred EEeCCHHHHH---HHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 34431111 333344433 45677888889999999999764 3568888999999999999999873 2
Q ss_pred CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHHHHHHH
Q 042445 162 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLGRMKAF 238 (246)
Q Consensus 162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l~~~ 238 (246)
.+. +...+-|||.+.-+ +.+++.++..++||++..+. |+|++- ++..++..++.|.++
T Consensus 337 ~f~-~i~~Q~GMFsy~Gl----------s~~QV~rLree~~IY~v~sG--------Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 337 NFD-FIISQRGMFSYTGL----------SPEQVDRLREEFGIYLVASG--------RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred ccc-hHhhcCceeecCCC----------CHHHHHHHHHhccEEEecCC--------eeeeccCChhhHHHHHHHHHhh
Confidence 355 56778899998533 67888999999999998765 999995 899999998888765
No 149
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.85 E-value=3e-19 Score=153.06 Aligned_cols=207 Identities=17% Similarity=0.119 Sum_probs=144.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++++||+|.+.+ +++|.++|+++|+++|+||+|+...++..+.......+. ....++++||||.|+++| ||
T Consensus 182 ~~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G---G~ 255 (406)
T PRK13393 182 AFESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG---GY 255 (406)
T ss_pred EEcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC---ce
Confidence 67789999999988 888999999999999999999855544322111111111 123578899999999988 99
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
+++++ ++++.++.... ++++.++..+.++.++|+... .. ...++.++++++.+.+.|+++ ++. ..
T Consensus 256 ~~~~~--------~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~-~~-~~~~~~~~~~~~~l~~~L~~~-g~~-~~ 323 (406)
T PRK13393 256 ITGSA--------ALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLK-AS-SAERERHQDRVARLRARLDKA-GIP-HL 323 (406)
T ss_pred eeCCH--------HHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHh-hC-HHHHHHHHHHHHHHHHHHHHc-CCC-cC
Confidence 99887 88888876532 233567788888888887422 22 223456788899999999876 554 33
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
.+. +.++.+.+.... +..++...+++++||.+.++.+... .+++|+++.. ++++++++++.|.+++++.
T Consensus 324 ~~~-~~i~~v~~~~~~-----~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 324 PNP-SHIVPVMVGDPV-----LCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred CCC-CCeEEEEeCCHH-----HHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 444 444444453211 1344444444457999998654432 4789999984 8999999999999988654
No 150
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.84 E-value=2.6e-19 Score=150.93 Aligned_cols=213 Identities=17% Similarity=0.138 Sum_probs=144.9
Q ss_pred hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
|.+++.+++ + ++++|+||||.+++ +++|.++|+++|+++++|++|.... .+ ..+...+ ..+++.|
T Consensus 114 ~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~~g~---~~-~~~~~~~---~d~~~~s 183 (356)
T cd06451 114 EEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLIVDAVSSLGG---EP-FRMDEWG---VDVAYTG 183 (356)
T ss_pred HHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEEEeeehhccC---cc-ccccccC---ccEEEec
Confidence 456666654 3 67889999999988 7778889999999999999876321 11 1111121 2256778
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHH---Hh-----------------hhcCCCCchHHHHHHHHHhhchH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKI---FL-----------------NISSDPATFIQGAVPQILEKTEE 136 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~---~~-----------------~~~~~~~~~~q~~~~~~l~~~~~ 136 (246)
.+|.++.|. ++||++.++ ++++.+.. .. ....+++...+.++..++..-..
T Consensus 184 ~~K~l~~p~-g~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~ 254 (356)
T cd06451 184 SQKALGAPP-GLGPIAFSE--------RALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILE 254 (356)
T ss_pred CchhccCCC-CcceeEECH--------HHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHH
Confidence 899987653 589999988 77776653 00 01113445555666666654334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhc-CeEEecCCCcCC
Q 042445 137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEE-SVIVLPGITVGL 213 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~pg~~f~~ 213 (246)
..+++..+..+++++.+.+.|+++ ++.....+. .+.++|+.++... +..++ .+.|.++ ||.+.+|..+..
T Consensus 255 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~L~~~~gI~~~~g~~~~~ 327 (356)
T cd06451 255 EGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEGV-----DGDEV-VRRLMKRYNIEIAGGLGPTA 327 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCCC-----CHHHH-HHHHHHhCCEEEeccccccc
Confidence 456777888889999999999887 565332222 4555666665321 24444 4455565 999999886655
Q ss_pred CCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445 214 KDWLRITFAV--EPSALENGLGRMKAFYD 240 (246)
Q Consensus 214 ~~~iRls~~~--~~~~l~~~~~~l~~~~~ 240 (246)
++++|+|++. ++++++++++.|.++++
T Consensus 328 ~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 328 GKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 7899999984 78999999999988763
No 151
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.84 E-value=1.6e-19 Score=155.08 Aligned_cols=205 Identities=15% Similarity=0.158 Sum_probs=142.3
Q ss_pred cCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445 17 VFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 17 ~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~ 95 (246)
++|+|..+ |.+++++|.++|++||+++|+||+|.++.+.+.. .+...++.... +.+|||.++ +|+|+||+++++
T Consensus 208 q~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~-~a~~~~~~~pD---i~t~gK~l~-~G~pigav~~~~ 282 (421)
T PRK09792 208 QGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKL-FAMDHYADKPD---LMTMAKSLA-GGMPLSGVVGNA 282 (421)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCch-hHHHhcCCCCc---EEEeehhhc-CCCceEEEEEcH
Confidence 58999865 8999999999999999999999999999877653 33333422111 688999975 889999999988
Q ss_pred CCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhh-cCCCCccccCCCC-
Q 042445 96 PNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLK-EIPCITCPKKPEG- 171 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~- 171 (246)
++++.+... ...+++.|++.++++.+.++... .+++++.+ .+.++.....+.|. ++|. +..+.|
T Consensus 283 --------~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~-~~g~~l~~~l~~l~~~~p~---v~~vrG~ 350 (421)
T PRK09792 283 --------NIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERAN-QLGQRLKNTLIDAKESVPA---IAAVRGL 350 (421)
T ss_pred --------HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHhCCC---cceeccc
Confidence 887776543 33455889999997777766432 24444444 33444433334443 3553 335677
Q ss_pred ceEEEEEeccccc-cCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLL-EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYD 240 (246)
Q Consensus 172 g~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~ 240 (246)
|+++|++++...- .........+...+.++||.+.+... ..+.+||.++. +++++++++++|.++++
T Consensus 351 Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~--~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 351 GSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGA--YGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred ceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecCC--CCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 9999999964310 00001234455667789999864221 16899999774 89999999999999875
No 152
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.84 E-value=1.1e-19 Score=156.57 Aligned_cols=207 Identities=13% Similarity=0.117 Sum_probs=141.5
Q ss_pred cCCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEE
Q 042445 14 DFQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLV 92 (246)
Q Consensus 14 ~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~ 92 (246)
..|+| +|.+++ .+++++|.++|++||+++|+||+|.++.++.........+.+ + +.+|||.++ +|+|+||++
T Consensus 203 p~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~p--D---i~t~sK~l~-~G~pig~v~ 275 (423)
T TIGR00713 203 PVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEP--D---LTTLGKIIG-GGLPVGAFG 275 (423)
T ss_pred CCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCc--c---hhhhhhhhc-CCCceeeee
Confidence 47878 788887 589999999999999999999999988543221111222222 2 447999987 899999999
Q ss_pred eeCCCCCcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 93 TSDPNGILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
+++ ++++.+... ...+++.+++++.++.+.|+... +.+.++.++.....++.+.+.+++. ++...+
T Consensus 276 ~~~--------~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v 346 (423)
T TIGR00713 276 GRR--------EIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDT-GIPHTV 346 (423)
T ss_pred EHH--------HHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Confidence 998 888888632 22345789999999999988433 2467777777777778788777776 333112
Q ss_pred CCCCceEEEEEeccccccC-----CCCh--HHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEG-----INSD--MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~-----~~~~--~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
...|+++ .+.+......+ ..+. ...+...+.++||.+.++ .| +.+|+++..+++++++++++|.++++
T Consensus 347 ~~~g~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-~~---~~~~l~~~~t~~~i~~~~~~l~~~l~ 421 (423)
T TIGR00713 347 NRVGSMF-SLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPS-QF---EACFLSAAHTEEDIENTIEAAEEVFA 421 (423)
T ss_pred EeeccEE-EEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecC-Cc---cceeeECCCCHHHHHHHHHHHHHHHh
Confidence 3333333 33343211000 0011 123444566799998754 22 45889888899999999999999986
Q ss_pred H
Q 042445 241 R 241 (246)
Q Consensus 241 ~ 241 (246)
+
T Consensus 422 ~ 422 (423)
T TIGR00713 422 E 422 (423)
T ss_pred h
Confidence 5
No 153
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.84 E-value=2.5e-19 Score=152.96 Aligned_cols=214 Identities=14% Similarity=0.185 Sum_probs=144.8
Q ss_pred hhhhhhccc---cccCCcCCCccCC--ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 3 LINQDITRE---FSDFQVFHVGSGF--SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 3 ~~~~~~~~~---~~~~p~NPtG~~~--~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
.+++.+.++ ++..|.|++|-+. +.+++++|.++|++||+++|.||+|.++...|..+ ....++-. ..+.++
T Consensus 171 ~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~-a~~~~gv~---pDi~t~ 246 (397)
T TIGR03246 171 AAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVT---PDILTS 246 (397)
T ss_pred HHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch-hhhhcCCC---CCEEEe
Confidence 444444433 5555656555433 78999999999999999999999998886666433 22222211 223478
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
||.++ .|+++||+++++ ++++.+... ...+++.+|+++.++.+.|+... ..+..+.++++.+.+.+.
T Consensus 247 ~K~lg-gG~pigav~~~~--------~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~---~~~l~~~~~~~~~~l~~~ 314 (397)
T TIGR03246 247 AKALG-GGFPIGAMLTTT--------EIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN---TPELLAGVKQRHDLFVDG 314 (397)
T ss_pred ehhhh-CCcceeEEEEcH--------HHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHH
Confidence 99986 789999999998 888877644 33455789999999988887422 234567777888888888
Q ss_pred hhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445 157 LKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG 231 (246)
Q Consensus 157 L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~ 231 (246)
|+++. ++...+.+. |.++.+.+.... ......+...|.++||.+.+.. .+++|++++ .++++++++
T Consensus 315 L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~----~~~~~~~~~~l~~~Gv~~~~~g----~~~lR~~p~~~~t~~~i~~~ 385 (397)
T TIGR03246 315 LEKINARYNVFSEIRGK-GLLIGAVLTEAY----QGKAKQFVNAAAEEGVIALIAG----PNVVRFAPSLVISDDDIDEG 385 (397)
T ss_pred HHHHHhcCCCeEeeecC-ceEEEEEEcCch----hhHHHHHHHHHHHCCeEEeecC----CCEEEEeCCCCCCHHHHHHH
Confidence 87642 111112223 444455554310 0123444556778899987732 478999765 499999999
Q ss_pred HHHHHHHHHH
Q 042445 232 LGRMKAFYDR 241 (246)
Q Consensus 232 ~~~l~~~~~~ 241 (246)
+++|.+++++
T Consensus 386 ~~~l~~~l~~ 395 (397)
T TIGR03246 386 LARFERAIEQ 395 (397)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 154
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.83 E-value=4.7e-19 Score=151.81 Aligned_cols=214 Identities=15% Similarity=0.120 Sum_probs=144.7
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ ++++|+||||..++ +++|.++|+++|+++++|++|+..... ..+..+ +..+++.|+
T Consensus 150 ~~l~~~i~~~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~~----~~~~~~---~~d~~~~s~ 219 (403)
T TIGR01979 150 DDLEKLLTEKTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHMP----VDVQAL---DCDFYVFSG 219 (403)
T ss_pred HHHHHHhccCCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcCccc----cCcccc---CCCEEEEec
Confidence 3455555543 78899999999998 788999999999999999998753311 111222 244888999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh---------------------hh-cCCCCchHHHHHHHHHhhch
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---------------------NI-SSDPATFIQGAVPQILEKTE 135 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~---------------------~~-~~~~~~~~q~~~~~~l~~~~ 135 (246)
+|.+|.+| +|++++++ ++++.+.... .+ ..+.+.....++..+++...
T Consensus 220 ~K~~gp~G--~g~l~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~ 289 (403)
T TIGR01979 220 HKMYGPTG--IGVLYGKE--------ELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLE 289 (403)
T ss_pred ccccCCCC--ceEEEEch--------HHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHH
Confidence 99987666 89999887 6665543110 01 11344555566666665322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc-
Q 042445 136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV- 211 (246)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f- 211 (246)
+...++.+++..+.++.+.+.|++++++..+.++. .+.++.+.++.. +...+.+.|.++||.+.+|..|
T Consensus 290 ~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~gI~v~~g~~~~ 362 (403)
T TIGR01979 290 AIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGV-------HPHDVGTILDEEGIAVRSGHHCA 362 (403)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCc-------CHHHHHHHHhhCCEEEcchhhhh
Confidence 22356677888888889999998887776432221 134444556432 2334566788999999987643
Q ss_pred -------CCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 212 -------GLKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 212 -------~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
+.++++|+|++. ++++++++++.|++.++.+
T Consensus 363 ~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 363 QPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 336899999994 8889999999998877653
No 155
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.83 E-value=5.1e-19 Score=151.09 Aligned_cols=207 Identities=13% Similarity=0.138 Sum_probs=146.9
Q ss_pred cccCCcCCCccCCC--hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFS--GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~--~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
++..|.+++|-+++ .+++++|.++|++||+++|+||+|.++...+..+ .....+..+.+.||||.++ +|+|+|
T Consensus 191 vi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~----a~~~~~~~pdi~t~~K~l~-~G~pig 265 (408)
T PRK04612 191 VMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLF----AHWQEQVTPDIVTLAKALG-GGFPIG 265 (408)
T ss_pred EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchh----hhhhcCCCCCEEEEcchhc-CCCceE
Confidence 78888888887766 5699999999999999999999999877665322 1122334567889999986 789999
Q ss_pred EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCIT 164 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~ 164 (246)
|+++++ ++.+.+... ...+++.+|+.+.++.+.|+...+ ....+..+++.+.+.+.|++ .+-+.
T Consensus 266 a~~~~~--------~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~i~ 334 (408)
T PRK04612 266 AMLAGP--------KVAETMQFGAHGTTFGGNPLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEALNAEFGVFA 334 (408)
T ss_pred EEEECH--------HHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence 999988 877777653 334557899999999999985322 23444455555555555544 32222
Q ss_pred cccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 165 CPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
.+... |+++-+.+.... ......+.+.+.++||.+.|.. .+.+|+.... +++++++++++|.+++++.
T Consensus 335 -~vrg~-Gl~~~i~~~~~~----~~~a~~i~~~l~~~Gvlv~~~g----~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~ 404 (408)
T PRK04612 335 -QVRGR-GLMLGAVLAPAH----AGQAGAILDLAAEHGLLLLQAG----PDVLRFVPALNLTDAELADGLARLRLALADY 404 (408)
T ss_pred -eeecc-ceEEEEEecCch----hhHHHHHHHHHHHCCeEEeeCC----CCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 22333 566666664210 0134455667889999998743 4889998764 8999999999999999875
Q ss_pred hh
Q 042445 243 AE 244 (246)
Q Consensus 243 ~~ 244 (246)
..
T Consensus 405 ~~ 406 (408)
T PRK04612 405 VA 406 (408)
T ss_pred hh
Confidence 43
No 156
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.83 E-value=5e-19 Score=149.01 Aligned_cols=201 Identities=19% Similarity=0.177 Sum_probs=141.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-ccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~G~ 90 (246)
++++++||||...+ +++|.++|++||+++|+|++++... .++ .+. ..+..+++.|++|.+ +++| +||
T Consensus 130 ~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s~g~---~~~-~~~---~~~~d~~~~s~~K~l~~~~G--~g~ 197 (355)
T TIGR03301 130 ATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSSFGA---IPI-DIE---ELDVDALIASANKCLEGVPG--FGF 197 (355)
T ss_pred EEEecCCcccchhH---HHHHHHHHHHcCCEEEEEeccccCC---ccc-chh---hcCccEEEecCCcccccCCc--eeE
Confidence 56778899999887 7899999999999999999776432 111 222 223447899999975 5566 699
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-h-----------------hhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHH
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-L-----------------NISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETAD 151 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~-----------------~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~ 151 (246)
+++++ ++++.+... . ...++++...+.++..++....+. ++.+..++++++++
T Consensus 198 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 269 (355)
T TIGR03301 198 VIARR--------DLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRE 269 (355)
T ss_pred EEECH--------HHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99998 777776521 0 011246777777777777643222 36778888899999
Q ss_pred HHHHHhhcCCCCccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHH
Q 042445 152 KCCDRLKEIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSA 227 (246)
Q Consensus 152 ~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~ 227 (246)
.+.+.|+++ |+..+..+ .++.++|++++... ..+.+.+.+.+.++||.+.+|..+. .+++|+++.. ++++
T Consensus 270 ~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~gi~i~~~~~~~-~~~iRis~~~~~~~~~ 343 (355)
T TIGR03301 270 LLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDP----DFDFDDFYQELKERGFVIYPGKLTL-ADTFRIGTIGEIDAAD 343 (355)
T ss_pred HHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCC----cchHHHHHHHHHHCCEEEECCcccc-ccEEEEecCCCCCHHH
Confidence 999999887 55532222 34566777776421 0133456677888999999987554 3899999853 8899
Q ss_pred HHHHHHHHHHH
Q 042445 228 LENGLGRMKAF 238 (246)
Q Consensus 228 l~~~~~~l~~~ 238 (246)
++++++.|+++
T Consensus 344 i~~~~~~l~~~ 354 (355)
T TIGR03301 344 IERLLEAIKDA 354 (355)
T ss_pred HHHHHHHHHhh
Confidence 99999999865
No 157
>PLN02624 ornithine-delta-aminotransferase
Probab=99.83 E-value=3.8e-19 Score=154.60 Aligned_cols=210 Identities=13% Similarity=0.098 Sum_probs=139.1
Q ss_pred cccCCcCCCccCCChh-hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGS-FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~-~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++..++||+|.+++++ ++++|.++|++||+++|+||+|.++...|..+ .....+.... +.++||.++++++++|+
T Consensus 229 iiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~-a~~~~~i~pD---iv~lsK~lggG~~piga 304 (474)
T PLN02624 229 LFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKML-ACDWEEVRPD---VVILGKALGGGVIPVSA 304 (474)
T ss_pred EECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchh-hHHhcCCCCC---EEEecccccCCCCccee
Confidence 6777789999988766 69999999999999999999999876665432 2111221222 34468999988899999
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCcc
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITC 165 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~ 165 (246)
+++++ ++++.+... ...+++.+++.+.++.+.|+...+. ...+...++.+.+.+.|++ ++....
T Consensus 305 v~~~~--------~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~---~l~~~~~~~~~~l~~~L~~l~~~~~~~i~ 373 (474)
T PLN02624 305 VLADK--------DVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDE---KLAERSAKLGQELRDQLQKIQKQFPKLIK 373 (474)
T ss_pred eeecH--------HHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 99987 777766543 3344478999999999998743221 1222333334444444433 332111
Q ss_pred ccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445 166 PKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 166 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~ 243 (246)
.+.+. |.++.+.++.... +. .....+.+.|.++||.+.|+. .+++||++. .+++++++++++|.+++++..
T Consensus 374 ~vrg~-G~~~~i~l~~~~~-~~-~~a~~~~~~L~e~GV~v~p~~----~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~ 446 (474)
T PLN02624 374 EVRGR-GLLNAVVLNSPKL-GP-VSAYDVCLKLKERGLLAKPTH----DTIIRLAPPLSISEDELQECSKALSDVLEHDL 446 (474)
T ss_pred EEEee-EEEEEEEecCCCc-Ch-HHHHHHHHHHHhCCeEEecCC----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence 23344 4444455643210 00 123334455788999999864 688999975 489999999999999987654
No 158
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.83 E-value=1.3e-18 Score=149.14 Aligned_cols=215 Identities=13% Similarity=0.066 Sum_probs=145.9
Q ss_pred hhhhhhhc-cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEcccc-CCcccCCCCCccccccCCcccEEEEc
Q 042445 2 ELINQDIT-RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVY-GHLAFGNTPFVSMGVFGSIVPLLTLG 75 (246)
Q Consensus 2 e~~~~~~~-~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y-~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (246)
|.+++.++ ++ ++++|+||+ . .++++|.++|+++|+++|+|++| .++.+.+....++. . .. ++++
T Consensus 151 ~~l~~~i~~~~~~~v~~~~~~~~~--~---~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~---~-~d-v~~~ 220 (402)
T cd00378 151 DALEKMALEFKPKLIVAGASAYPR--P---IDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP---G-AD-VVTT 220 (402)
T ss_pred HHHHHHHHhCCCCEEEecCcccCC--C---cCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc---C-Cc-EEEe
Confidence 44555553 22 667777764 2 24889999999999999999996 44444442222222 1 12 6899
Q ss_pred ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCc-hHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445 76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPAT-FIQGAVPQILEKTEEEFFSKIIDILRETADKC 153 (246)
Q Consensus 76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (246)
|+||.+ +|.|.||++++++ ++++.+...... ..+.+. ....++..++......+..+.++.++++++.+
T Consensus 221 s~sK~l--~G~~gg~i~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 291 (402)
T cd00378 221 TTHKTL--RGPRGGLILTRKG-------ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKAL 291 (402)
T ss_pred ccccCC--CCCCceEEEeccH-------HHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999985 7889999999764 777777665432 212222 23333333443222235677888899999999
Q ss_pred HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC------CCCeEEEEeec----
Q 042445 154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG------LKDWLRITFAV---- 223 (246)
Q Consensus 154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------~~~~iRls~~~---- 223 (246)
.+.|+++ |+..+..|.+++++|++++... .+.+.+.++|+++||.+.++..+. .++++|+++..
T Consensus 292 ~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~-----~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~ 365 (402)
T cd00378 292 AEALKER-GFKVVSGGTDNHLVLVDLRPKG-----ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTR 365 (402)
T ss_pred HHHHHhC-CCeEeecCCCCeEEEEeCCccC-----CCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHh
Confidence 9999987 6664335678999999887422 134566778889999998643221 24689999874
Q ss_pred --ChHHHHHHHHHHHHHHHH
Q 042445 224 --EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 224 --~~~~l~~~~~~l~~~~~~ 241 (246)
++++++++++.|.+++.+
T Consensus 366 ~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 366 GMGEEEMEEIADFIARALKD 385 (402)
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 488999999999998764
No 159
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.83 E-value=7.7e-19 Score=150.62 Aligned_cols=210 Identities=11% Similarity=0.083 Sum_probs=143.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+++ +++|.++|+++|+++++|++|+.+... ..+... +.-+++.|+
T Consensus 155 ~~l~~~i~~~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~~----~~~~~~---~~D~~~~s~ 224 (406)
T PRK09295 155 ETLPALFDERTRLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHHP----VDVQAL---DCDFYVFSG 224 (406)
T ss_pred HHHHHhcCCCcEEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccCccc----cCchhc---CCCEEEeeh
Confidence 3455555543 78899999999998 788899999999999999999754321 122222 233888999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH----------------------hh-hcCCCCchHHHHHHHHHhhc
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF----------------------LN-ISSDPATFIQGAVPQILEKT 134 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~----------------------~~-~~~~~~~~~q~~~~~~l~~~ 134 (246)
+|.+|.+| +||+++++ ++++.+... .. ...+.+.....++..+++..
T Consensus 225 ~K~~gp~G--~G~l~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~ 294 (406)
T PRK09295 225 HKLYGPTG--IGILYVKE--------ALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYV 294 (406)
T ss_pred hhccCCCC--cEEEEEch--------HhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHH
Confidence 99887676 79999987 655544211 00 11145666667777777643
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC
Q 042445 135 EEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL 213 (246)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 213 (246)
.+.-++..+++.++.++.+.+.|++++++..+.+. ..+. +.+.++.. +..+ +...|.++||.++.|..|..
T Consensus 295 ~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~i-v~~~~~~~------~~~~-~~~~L~~~gI~v~~g~~c~~ 366 (406)
T PRK09295 295 SALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGV-IAFNLGKH------HAYD-VGSFLDNYGIAVRTGHHCAM 366 (406)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceE-EEEEECCc------CHHH-HHHHHHhCCeEEeccccchH
Confidence 23345667778888889999999888777643321 2333 33345432 2344 45578899999999886642
Q ss_pred --------CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445 214 --------KDWLRITFAV--EPSALENGLGRMKAFY 239 (246)
Q Consensus 214 --------~~~iRls~~~--~~~~l~~~~~~l~~~~ 239 (246)
++.+|+|++. ++++++..++.|++..
T Consensus 367 ~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~ 402 (406)
T PRK09295 367 PLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIH 402 (406)
T ss_pred HHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 4689999994 8899999999988764
No 160
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.83 E-value=9.2e-19 Score=150.32 Aligned_cols=201 Identities=18% Similarity=0.193 Sum_probs=142.1
Q ss_pred CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCC
Q 042445 18 FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDP 96 (246)
Q Consensus 18 NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~ 96 (246)
++.|. +++.+++++|.++|++||+++|+||+|.++.+.+..+ +...++.... +.++||.++ +|+|+||+++++
T Consensus 209 ~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~-~~~~~~~~pD---iv~~sK~l~-~G~pigav~~~~- 282 (421)
T PRK06777 209 GEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLF-AMEYYDVKPD---LITMAKSLG-GGMPISAVVGRA- 282 (421)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchh-hhhhcCCCCC---EEeeehhhc-CCCceEEEEEcH-
Confidence 56675 6889999999999999999999999999987766432 3333332223 337999987 899999999998
Q ss_pred CCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCC
Q 042445 97 NGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEG 171 (246)
Q Consensus 97 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~ 171 (246)
++++.+... ...+++.|++++.++.+.|+...+ +...+..+++.+.+.+.|++ .+.+. .+.+.|
T Consensus 283 -------~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~-~vrg~G 351 (421)
T PRK06777 283 -------EVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKAKASCPAIV-DIRARG 351 (421)
T ss_pred -------HHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeE-EecCce
Confidence 888877644 334558899999999999974322 34555666666666666655 34343 356677
Q ss_pred ceEEEEEeccccccCCCChH---HHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDM---EFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD 240 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~ 240 (246)
.++.+ .+....- +. .+. ..+...+.++||.+.|+..| .+++||++. .+++++++++++|.+++.
T Consensus 352 ~~~~i-~~~~~~~-~~-~~~~~~~~l~~~~~~~Gv~i~~~~~~--g~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 352 SMVAV-EFNDPQT-GK-PSPEFTRQYQRQALEEGLLLLSCGVH--GNVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred EEEEE-EEecCcc-CC-ccHHHHHHHHHHHHhCCeEEeecCCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 66653 3432110 00 122 23333466899999998765 479999986 499999999999998874
No 161
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.83 E-value=1.2e-18 Score=147.10 Aligned_cols=213 Identities=19% Similarity=0.235 Sum_probs=142.2
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||+| +..++++|+++|+++|+++|+|++|....... ++ .....++++|+
T Consensus 127 ~~l~~~i~~~tklv~le~P~NP~~---~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~----p~----~~g~di~i~S~ 195 (366)
T PRK08247 127 KAIEQAITPNTKAIFIETPTNPLM---QETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR----PL----EEGADIVIHSA 195 (366)
T ss_pred HHHHHhcccCceEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCccccccC----ch----hcCCcEEEeec
Confidence 4455666544 8889999975 45779999999999999999999996433221 11 12245999999
Q ss_pred ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
||.++++ +++.||+++++. ++.+.++..+.. +..++++.+.++.+.++. +..+.++.+++++.+.+
T Consensus 196 sK~~~g~~d~~~G~iv~~~~-------~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t-----l~~r~~~~~~~a~~l~~ 263 (366)
T PRK08247 196 TKYLGGHNDVLAGLVVAKGQ-------ELCERLAYYQNAAGAVLSPFDSWLLIRGMKT-----LALRMRQHEENAKAIAA 263 (366)
T ss_pred ceeccCCCceeeeEEecChH-------HHHHHHHHHHHhcCCCCChHHHHHHHhccCc-----HHHHHHHHHHHHHHHHH
Confidence 9998764 579999998742 777777765443 346788888887777763 44555567999999999
Q ss_pred HhhcCCCCccccCC-CCceEEEEEeccccc-----cCCCChHHHHHHHHHhcCeEEecCCCcCC-------------CCe
Q 042445 156 RLKEIPCITCPKKP-EGSMFVMVKLNYSLL-----EGINSDMEFALKLAKEESVIVLPGITVGL-------------KDW 216 (246)
Q Consensus 156 ~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~-----~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------~~~ 216 (246)
.|+++|++..+..| .||+|.| .++.... +.. +...++..+....++.+.|+..++. ++-
T Consensus 264 ~L~~~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~~~l-~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~ 341 (366)
T PRK08247 264 FLNEQPGVTDVLYPGRGGMLSF-RLQDEEWVNPFLKSL-KLITFAESLGGVESFITYPATQTHADIPEEIRIANGVCNRL 341 (366)
T ss_pred HHHhCCCeeEEecCCcCcEEEE-EECCHHHHHHHHHcC-CcceEccCCCCCceEEECCcccccccCCHHHHHhcCCCCCe
Confidence 99998888755555 7888887 5642100 000 0111122222345666777754421 468
Q ss_pred EEEEeecChHHHHHHHHHHHHHHHH
Q 042445 217 LRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 217 iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
+|||++.++ .+..++.|.+++++
T Consensus 342 ~R~svGlE~--~~dl~~dl~~al~~ 364 (366)
T PRK08247 342 LRFSVGIEN--VEDLIADLKQAFKQ 364 (366)
T ss_pred EEEEeccCC--HHHHHHHHHHHHhh
Confidence 999999743 34556666666654
No 162
>PRK06460 hypothetical protein; Provisional
Probab=99.82 E-value=3.8e-18 Score=144.45 Aligned_cols=134 Identities=12% Similarity=0.076 Sum_probs=98.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccC-CceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVP-GLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-g~r~G~ 90 (246)
++++||||||.+++. ++|.++|+++|+++|+||+|..... ..+ +. .+..+++.|+||.|++. |.+.||
T Consensus 135 ~l~sp~NPtG~v~d~---~~I~~la~~~g~~vivDea~~~~~~----~~~---l~-~~~divv~S~sK~l~G~~~~~~G~ 203 (376)
T PRK06460 135 FVENITNPLLRVVDI---TELSKVCKENGSILIVDATFSTPIN----QKP---LE-LGADIVVHSASKFLAGHNDVIAGL 203 (376)
T ss_pred EEECCCCCCCcccCH---HHHHHHHHHcCCEEEEECCcCcccc----CCh---hh-cCCCEEEeecceeccCCCCceEEE
Confidence 889999999999994 5788889999999999999975321 111 11 12458999999998654 378999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhhc-CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNIS-SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++ ++++.++.....+ .+.++. .+..++. ..++++.+.+++.++++.+.+.|++.|.+..+..|
T Consensus 204 ~~~~~--------~l~~~l~~~~~~~g~~~~~~---~a~~~l~--~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp 270 (376)
T PRK06460 204 AAGYG--------KLLNVIDQMRRTLGTSLDPH---AAYLTLR--GIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYP 270 (376)
T ss_pred EecCH--------HHHHHHHHHHHhcCCCCCHH---HHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence 99987 8888888765433 233442 2333333 34678888889999999999999988776544444
No 163
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.82 E-value=2.8e-18 Score=147.92 Aligned_cols=210 Identities=17% Similarity=0.170 Sum_probs=139.7
Q ss_pred cccCCc-CCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQV-FHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~-NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
++..|. ||+|.+++ .+++++|.++|++||+++|+||+|.++.+.+..+ ....++-..+++ ++||.++ +|+|+|
T Consensus 208 vi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~-a~~~~~~~pDii---tlsK~l~-~G~pig 282 (443)
T PRK08360 208 LFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWF-AIEHFGVEPDII---TLGKPLG-GGLPIS 282 (443)
T ss_pred EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccch-hhhhcCCCCCEE---Eeccccc-CCceeE
Confidence 444453 99999887 5589999999999999999999999987766433 222222222333 6799987 899999
Q ss_pred EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCIT 164 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~ 164 (246)
|+++++ ++++.+... ...+++.+++.+.++.+.|+...+. ...+..+++-+.+.+.|+ +.+.+.
T Consensus 283 av~~~~--------~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~ 351 (443)
T PRK08360 283 ATIGRA--------EIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEEMKKKHELIG 351 (443)
T ss_pred EEEEcH--------HHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 999988 888888644 3345578999999999999853221 123334444444444443 343222
Q ss_pred cccCCCCceEEEEEeccccc-cCC-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445 165 CPKKPEGSMFVMVKLNYSLL-EGI-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD 240 (246)
Q Consensus 165 ~~~~~~~g~~~~~~~~~~~~-~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~ 240 (246)
.+.. -|.++-+++....- +.. ......+...+.++||.+.+.. .+.+||++. .+++++++++++|.++++
T Consensus 352 -~vrg-~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----~~~lr~~P~l~~t~~~id~~~~~l~~~l~ 425 (443)
T PRK08360 352 -DVRG-IGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFS----GNVLRIQPPLTIEKEVLDEGLDILEEAIE 425 (443)
T ss_pred -eeec-cceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 2233 35666666642210 000 0123345566778999886532 478999766 499999999999999998
Q ss_pred HHh
Q 042445 241 RHA 243 (246)
Q Consensus 241 ~~~ 243 (246)
+..
T Consensus 426 ~~~ 428 (443)
T PRK08360 426 DVE 428 (443)
T ss_pred HHH
Confidence 754
No 164
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.81 E-value=2.7e-18 Score=146.00 Aligned_cols=208 Identities=14% Similarity=0.106 Sum_probs=137.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+.+ +++|.++|+++|+++|+|++|....... ++. .+ .-+++.|+
T Consensus 137 ~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~----pl~-~g---~Div~~S~ 205 (386)
T PRK06767 137 ADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQR----PLE-LG---CDAVVHSA 205 (386)
T ss_pred HHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCcccccCC----chh-cC---CcEEEecC
Confidence 3455555543 88899999999988 7888889999999999999997543321 111 11 23788899
Q ss_pred ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHH-hh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIF-LN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC 154 (246)
Q Consensus 78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (246)
||.++++|.++ ||+++++ +.++.+... .. .+..++++.++++.+.|+ .+..+.++.+++++.+.
T Consensus 206 sK~l~g~g~~~gG~v~~~~--------~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~-----tl~~r~~~~~~~a~~la 272 (386)
T PRK06767 206 TKYIGGHGDVVAGVTICKT--------RALAEKIRPMRKDIGGIMAPFDAWLLLRGLK-----TLAVRMDRHCDNAEKIV 272 (386)
T ss_pred cceecCCCCceeEEEEeCh--------HHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHH
Confidence 99999999886 8888887 777765433 32 333567776666555554 24556677799999999
Q ss_pred HHhhcCCCCccccCC----------CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC------------
Q 042445 155 DRLKEIPCITCPKKP----------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG------------ 212 (246)
Q Consensus 155 ~~L~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~------------ 212 (246)
+.|+++|++..+..| ..|-.+.++++... .+...+.+.|+..++.+.-|....
T Consensus 273 ~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~-----~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~ 347 (386)
T PRK06767 273 SFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGK-----EETQAFINDLHFITIAVSLGDTETLIQHPATMTHAA 347 (386)
T ss_pred HHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCH-----HHHHHHHHhCCccEEecCCCCcCccccCCCcccccc
Confidence 999999988754433 12334444564221 134444555666666665553221
Q ss_pred -----------CCCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 213 -----------LKDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 213 -----------~~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
.++.||||++.++ .+..++-|.+++.
T Consensus 348 ~~~~~~~~~gi~~~l~R~svGlE~--~~dl~~dl~~al~ 384 (386)
T PRK06767 348 IPAELRQEMGIYDNLIRLSVGLES--WEDIVSDLEQALK 384 (386)
T ss_pred CCHHHHHhcCCCCCeEEEEeccCC--HHHHHHHHHHHHh
Confidence 0468999999743 3445555666554
No 165
>PRK02948 cysteine desulfurase; Provisional
Probab=99.81 E-value=7.4e-19 Score=149.54 Aligned_cols=214 Identities=10% Similarity=0.057 Sum_probs=143.7
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+++ +++|.++|+++|+++++|+++..... +. . +...+..+++.|+
T Consensus 129 ~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~~g~~---~~-~---~~~~~~d~~~~s~ 198 (381)
T PRK02948 129 VDLERAITPDTVLASIQHANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQTFGKL---PI-D---VFEMGIDSLSVSA 198 (381)
T ss_pred HHHHHhcCCCCEEEEEECCcCCcEeehh---HHHHHHHHHHcCCEEEEEChhhcccc---cc-C---cccCCCCEEEecH
Confidence 3455555443 78999999999988 67888999999999999977653221 11 1 1122345778899
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhH-HHHHHH----Hhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGI-VDSIKI----FLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~-~~~l~~----~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 151 (246)
+|.+|.+| +|++++++ ++ +..+.. ... ..+++|.+.+.++..++... .+++++.++.+++.++
T Consensus 199 ~K~~gp~G--~G~l~~~~--------~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~ 267 (381)
T PRK02948 199 HKIYGPKG--VGAVYINP--------QVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENI-LKNMQEESLRFKELRS 267 (381)
T ss_pred HhcCCCCc--EEEEEEcC--------CCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99998888 89998876 32 111110 001 12367888899888888742 3578888999999999
Q ss_pred HHHHHhhcCCCCccccCCCCceEEE---EEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---------------
Q 042445 152 KCCDRLKEIPCITCPKKPEGSMFVM---VKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL--------------- 213 (246)
Q Consensus 152 ~l~~~L~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------------- 213 (246)
.+.+.|+++ ++..+ ......+.. +.+... +. +..++ ...|.++||.+.+|..|..
T Consensus 268 ~l~~~L~~~-~~~v~-~~~~~~~~~~~i~~~~~~---~~-~~~~~-~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~ 340 (381)
T PRK02948 268 YFLEQIQTL-PLPIE-VEGHSTSCLPHIIGVTIK---GI-EGQYT-MLECNRRGIAISTGSACQVGKQEPSKTMLAIGKT 340 (381)
T ss_pred HHHHHHhcC-CCCEE-EeCCCccCcCCEEEEEeC---CC-CHHHH-HHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCC
Confidence 999999987 44322 111112211 111111 11 24444 4456788999998875421
Q ss_pred ----CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 214 ----KDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 214 ----~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
.+++|+|++. +++++++.++.|++.++++.
T Consensus 341 ~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 341 YEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred hHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3789999994 89999999999999887654
No 166
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.81 E-value=3e-18 Score=147.74 Aligned_cols=215 Identities=13% Similarity=0.143 Sum_probs=145.1
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+++ +++|.++|+++|+++++|++|.... .+. .+..+ +.-+++.|+
T Consensus 164 ~~l~~~i~~~t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~g~---~~~-~~~~~---~~d~~~~s~ 233 (424)
T PLN02855 164 EQLKELLSEKTKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSVPH---MPV-DVQTL---GADFLVASS 233 (424)
T ss_pred HHHHHHhccCceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCC---cCC-Cchhc---CCCEEEeec
Confidence 4455666544 88899999999998 6788899999999999999996322 111 12222 223779999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh---------------------hh-cCCCCchHHHHHHHHHhhch
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL---------------------NI-SSDPATFIQGAVPQILEKTE 135 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~---------------------~~-~~~~~~~~q~~~~~~l~~~~ 135 (246)
+|.+|.+| +||+++++ ++++.+.... .+ ..+.+.....++..+++...
T Consensus 234 ~K~~gp~G--~G~l~~~~--------~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~ 303 (424)
T PLN02855 234 HKMCGPTG--IGFLWGKS--------DLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLS 303 (424)
T ss_pred ccccCCCc--cEEEEEch--------hhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHH
Confidence 99876666 89999987 6665543210 01 11244445555555565323
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-----CCceEEEEEeccccccCCCChHHHHHHHHHhc-CeEEecCC
Q 042445 136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-----EGSMFVMVKLNYSLLEGINSDMEFALKLAKEE-SVIVLPGI 209 (246)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~pg~ 209 (246)
+..+++.+++..+.++.+.+.|++++++..+.+. ..+.++.+.++.. +..+ +...|.++ ||.+..|.
T Consensus 304 ~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~------~~~~-v~~~L~~~~gI~v~~g~ 376 (424)
T PLN02855 304 EIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI------HPTD-LSTFLDQQHGVAIRSGH 376 (424)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc------CHHH-HHHHhcccCCEEEechh
Confidence 4457778888888899999999888777643221 1134555556532 2334 45555555 99999887
Q ss_pred CcC--------CCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 210 TVG--------LKDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 210 ~f~--------~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
.|. .++++|+|+.. ++++++.+++.|++.++.+.
T Consensus 377 ~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 377 HCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred hhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 653 25789999984 89999999999999887653
No 167
>PLN02242 methionine gamma-lyase
Probab=99.81 E-value=5.7e-18 Score=144.89 Aligned_cols=137 Identities=14% Similarity=0.098 Sum_probs=103.7
Q ss_pred hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
|.+++.+++ + ++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+... .+ +..++++|
T Consensus 153 e~l~~~i~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~~------~~---g~divv~S 220 (418)
T PLN02242 153 EAVKKAVVPGKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSPA------RL---GADVVVHS 220 (418)
T ss_pred HHHHHhcCcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCHH------Hc---CCcEEEEe
Confidence 456666654 2 88999999999985 89999999999999999999986654321 11 24488999
Q ss_pred cccccccCCce-EEEEEeeCCCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLR-LGWLVTSDPNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK 152 (246)
Q Consensus 77 ~sK~~~~~g~r-~G~i~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (246)
+||.++++|++ .||+++++ ++++.++.... ...+.+...|.+...++... .+..+.++++++++.
T Consensus 221 ~SK~l~g~g~~~gG~iv~~~--------~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~---tl~~r~~~~~~~a~~ 289 (418)
T PLN02242 221 ISKFISGGADIIAGAVCGPA--------ELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP---HLSLRMKEHCRRAME 289 (418)
T ss_pred CccccCCCCCceEEEEEcCH--------HHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC---cHHHHHHHHHHHHHH
Confidence 99999999988 58999887 88888876633 23355666777776665522 455566788999999
Q ss_pred HHHHhhcCC
Q 042445 153 CCDRLKEIP 161 (246)
Q Consensus 153 l~~~L~~~~ 161 (246)
+.+.|++++
T Consensus 290 la~~L~~~~ 298 (418)
T PLN02242 290 YAKRMKELG 298 (418)
T ss_pred HHHHHHhCC
Confidence 999999873
No 168
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.80 E-value=4.8e-18 Score=145.86 Aligned_cols=209 Identities=18% Similarity=0.133 Sum_probs=139.6
Q ss_pred CCcCCCc-cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEe
Q 042445 15 FQVFHVG-SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVT 93 (246)
Q Consensus 15 ~p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~ 93 (246)
.++| +| .++|.+.+++|.++|++||+++|+||+|.++...+..+ .....+....+.++||.++ +|+++|++++
T Consensus 207 v~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~----a~~~~gv~pDi~tlsK~l~-~G~pigav~~ 280 (425)
T PRK07495 207 VQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF----AMEHHEVAADLTTMAKGLA-GGFPLAAVTG 280 (425)
T ss_pred ccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce----eecccCCCCCEEeehhhhc-CCccceEEEE
Confidence 3456 77 45799999999999999999999999999887666432 2222234456889999975 7899999999
Q ss_pred eCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccC
Q 042445 94 SDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPKK 168 (246)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~ 168 (246)
++ ++.+.+... ...+++.|++.++++.+.++...+. ...+..++..+.+.+.|+ +.|.+..+ .
T Consensus 281 ~~--------~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-r 348 (425)
T PRK07495 281 RA--------EIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEE---DLCERANQLGNRLKQRLASLRETVPEIADI-R 348 (425)
T ss_pred cH--------HHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHhhCCCeeee-e
Confidence 98 888776543 3345588999999777777632221 122222233333333332 24433321 2
Q ss_pred CCCceEEEEEeccccccCCC-ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445 169 PEGSMFVMVKLNYSLLEGIN-SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~ 244 (246)
..|+++|+++....-.... .....+...+.++|+.+.+.... .+.+||.... +++++++++++|.+++++...
T Consensus 349 -G~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~--~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~~ 424 (425)
T PRK07495 349 -GPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVH--GNVIRFLAPITIQDDVFAEALDILEASILEASA 424 (425)
T ss_pred -cCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecCCC--CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 3389999998543100000 11344566677899998763211 4889999774 999999999999999987653
No 169
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.80 E-value=8.1e-18 Score=143.59 Aligned_cols=140 Identities=12% Similarity=0.134 Sum_probs=102.4
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG 75 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (246)
|.+++.++++ ++++|+||||.+.+ +++|.++|+++ |+++|+||+|..+.+.. ++ .. +..+++.
T Consensus 140 e~l~~~i~~~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~~----~l-~~---g~Divv~ 208 (400)
T PRK06234 140 EEVRNALKANTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQR----PL-QL---GADVVVH 208 (400)
T ss_pred HHHHHHhccCCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcCC----ch-hh---CCcEEEe
Confidence 4566666554 88899999999987 88888999997 99999999999765431 11 11 2348999
Q ss_pred ccccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHH--hh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 042445 76 SISKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIF--LN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETAD 151 (246)
Q Consensus 76 s~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 151 (246)
|+||.++++|+++ ||+++++ ++++.++.. .. .+..+++.....+.+.++. +..+.++.+++.+
T Consensus 209 S~sK~l~g~g~~~gG~v~~~~--------~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~t-----l~~r~~~~~~na~ 275 (400)
T PRK06234 209 SATKYLNGHGDVIAGFVVGKE--------EFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKT-----LQIRMEKHCKNAM 275 (400)
T ss_pred eccccccCCCCceeEEEEecH--------HHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc-----HHHHHHHHHHHHH
Confidence 9999999999875 9999887 888877653 22 2345677777666666653 4455555667888
Q ss_pred HHHHHhhcCCCCcc
Q 042445 152 KCCDRLKEIPCITC 165 (246)
Q Consensus 152 ~l~~~L~~~~~~~~ 165 (246)
.+.+.|++.|.+..
T Consensus 276 ~~a~~L~~~~~V~~ 289 (400)
T PRK06234 276 KVAKFLESHPAVEK 289 (400)
T ss_pred HHHHHHHcCCCeeE
Confidence 88899987765543
No 170
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.80 E-value=3.7e-18 Score=146.17 Aligned_cols=205 Identities=16% Similarity=0.153 Sum_probs=141.0
Q ss_pred cccCCcCCCccCCCh-hhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSG-SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~-~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++..+++++|...++ +++++|.++|++||+++|+||+|.++.+.|..+ +....+....++ ++||.+++.++|+||
T Consensus 191 i~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~-~~~~~~~~~di~---~~gK~l~~g~~~ig~ 266 (401)
T TIGR01885 191 IVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL-CVDHENVKPDIV---LLGKALSGGVYPVSA 266 (401)
T ss_pred EEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh-HHhhcCCCCCEE---EeeccccCCCCCcEE
Confidence 444567899998865 479999999999999999999998876666432 221122122333 467999887799999
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC-CCccccC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP-CITCPKK 168 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~ 168 (246)
+++++ ++++.+... ...+++.+++.+.++.++|+...+. ...+..++..+.+.+.|++++ ++.....
T Consensus 267 v~~~~--------~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~---~l~~~~~~~~~~~~~~L~~l~~~~~~~~~ 335 (401)
T TIGR01885 267 VLADD--------DVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEE---KLAENAEKLGEIFRDQLKKLPKPIITEVR 335 (401)
T ss_pred EEEcH--------HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhccCCceeEEe
Confidence 99998 888877653 3344577899999999988743322 234556666788888888763 2211123
Q ss_pred CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY 239 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~ 239 (246)
+.|.++. +.++.... + .....+...|.++||.+.|+. ++.+||++. .+++++++++++|.+++
T Consensus 336 g~g~~~~-i~~~~~~~-~--~~~~~l~~~l~~~Gv~v~~~~----~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 336 GRGLLNA-IVIDESKT-G--RTAWDLCLKLKEKGLLAKPTH----GNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred ecCeeEE-EEeccCcc-h--hHHHHHHHHHHhCCEEEEecC----CCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 4444444 44543210 0 023444555678899998854 689999986 49999999999999876
No 171
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.80 E-value=4e-18 Score=145.62 Aligned_cols=223 Identities=18% Similarity=0.147 Sum_probs=151.8
Q ss_pred hhhhhhhcc------c--cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCc--cc-----CCCCCcccccc
Q 042445 2 ELINQDITR------E--FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHL--AF-----GNTPFVSMGVF 65 (246)
Q Consensus 2 e~~~~~~~~------~--~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~--~~-----~~~~~~~~~~~ 65 (246)
|.+++.+++ + ++++||||+ |+++|.+++++|.++|++||++||+|++.... .+ ++....++.
T Consensus 139 e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~-- 216 (431)
T cd00617 139 AKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIA-- 216 (431)
T ss_pred HHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHH--
Confidence 455666552 1 778999998 99999999999999999999999999995421 12 121122222
Q ss_pred CCcccEEEEcccccccccCCce------EEEEEeeCCCCCcchhhHHHHHHHHh----hh-c-CCCCchHHHHHHHHHhh
Q 042445 66 GSIVPLLTLGSISKRGIVPGLR------LGWLVTSDPNGILQDSGIVDSIKIFL----NI-S-SDPATFIQGAVPQILEK 133 (246)
Q Consensus 66 ~~~~~~i~~~s~sK~~~~~g~r------~G~i~~~~~~~~~~~~~~~~~l~~~~----~~-~-~~~~~~~q~~~~~~l~~ 133 (246)
+.++.+.|+||.+.+.|+| .||++++++ +++++++... .+ + .+.+.-..++++..|.+
T Consensus 217 ---ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~-------~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e 286 (431)
T cd00617 217 ---EIAREMFSYADGCTMSAKKDGLVNIGGFLALRDD-------ELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLRE 286 (431)
T ss_pred ---HHHHHhhccCCEEEEEeecCCCCccceEEEeCcH-------HHHHHHHHhccccCCccccccccHHHHHHHHHHHHh
Confidence 1235578888888888887 568888873 5888887531 11 1 13344444555446653
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCC----CChHHHHHHHHHhcCeEEec-C
Q 042445 134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGI----NSDMEFALKLAKEESVIVLP-G 208 (246)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~ll~~~gi~v~p-g 208 (246)
..+ .+...+.+. +++.+.+.|++. |+. +..|.||+++|++++.- ++++ -++..++.+++.+.||.+.. |
T Consensus 287 ~~~--~~~l~~~~~-~r~~l~~~L~~~-G~~-v~~P~Ggh~v~~d~~~~-~~~~~~~~~~~~~la~~L~~e~gV~~~~~g 360 (431)
T cd00617 287 AVE--EDYLRHRVE-QVRYLGDRLDEA-GVP-IVEPAGGHAVFIDAREF-LPHIPQEQFPAQALAAELYLEAGVRAVELG 360 (431)
T ss_pred ccc--HHHHHHHHH-HHHHHHHHHHHC-CCC-ccCCCcceEEEEEhHHh-cCCCCcccCcHHHHHHHHHHHcCeeEEeec
Confidence 211 222333333 558899999987 676 57899999999987642 1111 13788888999999999765 4
Q ss_pred CCc-CC-----------CCeEEEEeec---ChHHHHHHHHHHHHHHHHH
Q 042445 209 ITV-GL-----------KDWLRITFAV---EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 209 ~~f-~~-----------~~~iRls~~~---~~~~l~~~~~~l~~~~~~~ 242 (246)
... +. -+.+|+++.. +.+.++..++.|...+++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~ 409 (431)
T cd00617 361 IFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERR 409 (431)
T ss_pred ceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhH
Confidence 321 11 2789999984 8999999999999888653
No 172
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.79 E-value=3e-17 Score=139.78 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=104.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ ++++|+||||.+++ +++|.++|+++|+++|+|++|..+.... ++. .+ .-++++|+
T Consensus 140 e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~----~l~-~~---~Divv~S~ 208 (398)
T PRK08249 140 EQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQN----PLA-LG---ADLVIHSA 208 (398)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccCC----chh-hC---CCEEeccC
Confidence 4566666654 77899999999998 7789999999999999999999654321 111 12 12778999
Q ss_pred ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
||.++++|.++ ||+++++ +++++++.... .+..++++.++.+.+.++. +..+.++..++++.+.+
T Consensus 209 sK~l~g~~~~~gG~vv~~~--------~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t-----L~~R~~~~~~na~~la~ 275 (398)
T PRK08249 209 TKFLSGHADALGGVVCGSK--------ELMEQVYHYREINGATMDPMSAYLILRGMKT-----LKLRVRQQQESAMALAK 275 (398)
T ss_pred ceecCCCCCceEEEEECCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHhCcch-----HHHHHHHHHHHHHHHHH
Confidence 99998888776 5566655 88888876654 3446677777776665553 55666777889999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|+++|.+..+..|
T Consensus 276 ~L~~~p~v~~V~yP 289 (398)
T PRK08249 276 YLQTHPKVEAVYYP 289 (398)
T ss_pred HHHcCCCeeEEECC
Confidence 99987766543333
No 173
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.79 E-value=1.6e-17 Score=141.44 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=146.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ ++++||||||.+++ +++|.++|+++|+++++|+++..... + ..+...+ --+++.|+
T Consensus 131 ~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~~ivD~a~~~g~~---~-~~~~~~~---~D~~~~s~ 200 (382)
T TIGR03403 131 EQVREAITEKTALVSVMWANNETGMIFP---IKEIGEICKERGVLFHTDAVQAIGKI---P-VDVQKAG---VDFLSFSA 200 (382)
T ss_pred HHHHHhcccCCeEEEEEcccCCCccccC---HHHHHHHHHHcCCEEEEechhhcCCC---c-cCccccC---CCEEEEcc
Confidence 3455555543 78899999999999 66888899999999999999774221 1 1111111 22788899
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
+|.+|.+| +|+++..+...... .+............+++...+.++..++.. ...+++...+++++.++.+.+.|
T Consensus 201 ~K~~gp~G--~g~l~vr~~~~~~p--~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L 275 (382)
T TIGR03403 201 HKFHGPKG--VGGLYIRKGVELTP--LFHGGEHMGGRRSGTLNVPYIVAMGEAMRL-ANEYLDFEKSHVRRLRDRLEDAL 275 (382)
T ss_pred hhhCCCCc--eEEEEECCCCCCCC--cccCCCCCCCcccCCcChHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Confidence 99988788 58887765321110 110000000011226788888888888874 34457788889999999999999
Q ss_pred hcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-------------------CC
Q 042445 158 KEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------KD 215 (246)
Q Consensus 158 ~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~~ 215 (246)
++++++.. ..+. .+.++.+.++.. +..+. ...|.++||.++.|..|.. .+
T Consensus 276 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~-~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~ 347 (382)
T TIGR03403 276 LELPDVFV-VGDREHRVPNTILISIKGV------EGEAM-LWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHT 347 (382)
T ss_pred hcCCCEEE-ECCCCCCcCCEEEEEeCCC------CHHHH-HHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCe
Confidence 98888874 3332 234555556432 24444 4447789999998876631 25
Q ss_pred eEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 216 WLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 216 ~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
.+|+|+.. ++++++++++.|++.+++..
T Consensus 348 ~iR~s~~~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 348 AIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 79999995 89999999999999887754
No 174
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.79 E-value=6.3e-18 Score=141.48 Aligned_cols=198 Identities=15% Similarity=0.084 Sum_probs=130.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++|||| |.+++.+++++|+++|+++|+++|+||+|..+.....+. ++.......+ +++.|+||.|+++| |++
T Consensus 132 ~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d-~~~~s~sK~~~~~~---g~~ 205 (338)
T cd06502 132 SLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVD-SVSFCLSKGGGAPV---GAV 205 (338)
T ss_pred EEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCC-EEEEeccccCCCcc---ceE
Confidence 88999998 667799999999999999999999999986443211111 2222212223 45779999999887 654
Q ss_pred -EeeCCCCCcchhhHHHHHHHHhhh---cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 92 -VTSDPNGILQDSGIVDSIKIFLNI---SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 92 -~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
++++ ++++.++..... +.+.+++.+.++...|+.. .+. +..+.+.++++.+.+.|++++ +. .
T Consensus 206 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~--~~~-~~~~~~~~~~~~l~~~L~~~~-~~-~- 271 (338)
T cd06502 206 VVGNR--------DFIARARRRRKQAGGGMRQSGFLAAAGLAALEND--LWL-RRLRHDHEMARRLAEALEELG-GL-E- 271 (338)
T ss_pred EECCH--------HHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCc--hHH-HHHHHHHHHHHHHHHHHHhcC-CC-c-
Confidence 4555 888888765422 2245777888888878642 233 444666777889999999874 43 2
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHH--HhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLA--KEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKA 237 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll--~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~ 237 (246)
.+..+.++.++++.... .-.++..++. .++|+.+.+.. .+++|+++.. ++++++++++.+++
T Consensus 272 ~~~~~~~~~v~~~~~~~----~~~~l~~~l~~~~~~gi~~~~~~----~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 272 SEVQTNIVLLDPVEANA----VFVELSKEAIERRGEGVLFYAWG----EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred ccccCCeEEEecCCccH----HHHHHHHHHHHhhhCCEEEEecC----CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 33445666665542210 0112222211 25799887753 3899999984 88999999988764
No 175
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.79 E-value=2.8e-17 Score=138.98 Aligned_cols=202 Identities=13% Similarity=0.103 Sum_probs=140.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-ccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~G~ 90 (246)
.+++++||||+.++ +++|.++|+++|+++|+|++++.. ..+ ..+..++ .-++++|++|.+ +.+| +||
T Consensus 134 ~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~~g---~~~-~~~~~~~---~D~~~~s~~K~l~~p~G--~G~ 201 (363)
T TIGR02326 134 ALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSSFG---GIP-IDIAELH---IDYLISSANKCIQGVPG--FGF 201 (363)
T ss_pred EEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccccc---Ccc-cchhhcC---ccEEEecCccccccCCc--ceE
Confidence 46677899999998 789999999999999999987632 222 2233332 237889999976 4456 799
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-h-----------------h-hcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHH
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-L-----------------N-ISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETA 150 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~-----------------~-~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~ 150 (246)
+++++ +.++.+... . + ..+..+...+.++.+++..-.+. .+++.++++++++
T Consensus 202 l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~ 273 (363)
T TIGR02326 202 VIARQ--------AELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQ 273 (363)
T ss_pred EEECH--------HHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence 99988 666654310 0 0 11245777778877777643333 4677889999999
Q ss_pred HHHHHHhhcCCCCccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe-ec-ChH
Q 042445 151 DKCCDRLKEIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-AV-EPS 226 (246)
Q Consensus 151 ~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~-~~-~~~ 226 (246)
+.+.+.|+++ |+..+..+ ..+...++.++... .+ +...+.+.|+++||.+.||..+ ..+++|+++ +. +.+
T Consensus 274 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~v~~~L~~~gi~v~~g~~~-~~~~iRi~~~~~~~~e 347 (363)
T TIGR02326 274 KTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDP--DY--RFADFYQRLKEQGFVIYPGKVS-QVDCFRIGNIGEVDAA 347 (363)
T ss_pred HHHHHHHHHc-CCeeccCcccCCceEEEEECCCCC--CC--CHHHHHHHHHHCCEEEECCcCC-CCCEEEEecCCCCCHH
Confidence 9999999887 55533222 34556676665420 01 3344556678889999998765 358999996 43 899
Q ss_pred HHHHHHHHHHHHH
Q 042445 227 ALENGLGRMKAFY 239 (246)
Q Consensus 227 ~l~~~~~~l~~~~ 239 (246)
+++++++.|++++
T Consensus 348 dv~~~l~~l~~~l 360 (363)
T TIGR02326 348 DITRLLTAIGKAM 360 (363)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 176
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.78 E-value=3.9e-17 Score=138.34 Aligned_cols=205 Identities=17% Similarity=0.145 Sum_probs=136.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-ccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~G~ 90 (246)
++++|+||||...+ +++|.++|+++|+++|+|+++.. +..+ ..+...+ .-+++.|++|.+ +.+| +||
T Consensus 136 ~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~~~---g~~~-~~~~~~~---~d~~v~s~~K~l~g~~G--~G~ 203 (368)
T PRK13479 136 ALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMSSF---GAIP-IDIAELG---IDALISSANKCIEGVPG--FGF 203 (368)
T ss_pred EEEcccCccccccC---HHHHHHHHHHcCCEEEEEccccc---CCcc-ccccccC---ceEEEecCccccccCCC--ceE
Confidence 68899999999988 67888999999999999966532 2212 2222222 226668999964 6678 699
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhh------------------cCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHH
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNI------------------SSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETAD 151 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~ 151 (246)
+++++ ++++.+...... .++++...+.++..++..-.+ .++++..+++.++++
T Consensus 204 l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~ 275 (368)
T PRK13479 204 VIARR--------SELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQR 275 (368)
T ss_pred EEECH--------HHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 99988 777766543110 124555566666666653222 346777788999999
Q ss_pred HHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe-ec-ChHH
Q 042445 152 KCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF-AV-EPSA 227 (246)
Q Consensus 152 ~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~-~~-~~~~ 227 (246)
.+.+.|+++ |+..+..+. .+....+.++... +. +.+.+.+.|.++||.+.+|..+ ..+++|++. +. ++++
T Consensus 276 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~l~~~L~~~gi~v~~g~~~-~~~~iRis~~~~~t~ed 349 (368)
T PRK13479 276 TLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADP--AY--DFKEFYERLKEQGFVIYPGKLT-QVDTFRIGCIGDVDAAD 349 (368)
T ss_pred HHHHHHHHc-CCcccCCchhcCceEEEEECCCCC--Cc--CHHHHHHHHHHCCEEEecCCCC-CCCEEEEecCCCCCHHH
Confidence 999999887 565332221 1222222233210 11 3344556677889999987644 257899986 43 8999
Q ss_pred HHHHHHHHHHHHHHH
Q 042445 228 LENGLGRMKAFYDRH 242 (246)
Q Consensus 228 l~~~~~~l~~~~~~~ 242 (246)
++++++.|++++++.
T Consensus 350 i~~~l~~L~~~l~~~ 364 (368)
T PRK13479 350 IRRLVAAIAEALYWM 364 (368)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999998764
No 177
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.78 E-value=2.2e-17 Score=140.75 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=101.1
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+++ +++|.++|+++|+++|+|++|+...+.. +. .+ +..+++.|+
T Consensus 141 e~l~~ai~~~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~~----~~-~~---gaDivv~S~ 209 (398)
T PRK07504 141 DNWEKAVRPNTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQK----PL-EL---GAHIVVYSA 209 (398)
T ss_pred HHHHHhcCcCceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCccccccCC----ch-hh---CCCEEEeec
Confidence 4556666654 88999999999998 8888899999999999999998655321 11 12 234789999
Q ss_pred ccccccCCceEEE-EEeeCCCCCcchhhHHH-HHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGW-LVTSDPNGILQDSGIVD-SIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC 154 (246)
Q Consensus 78 sK~~~~~g~r~G~-i~~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (246)
||.++++|+++|+ +++++ +.+. .++.. ...+..++++..+.+.+.|+. +..+.++..++.+.+.
T Consensus 210 sK~l~g~g~~~GG~vv~~~--------~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~t-----l~~R~~~~~~na~~la 276 (398)
T PRK07504 210 TKHIDGQGRCLGGVVLSDK--------AWIEEHLQDYFRHTGPSLSPFNAWTLLKGLET-----LPVRVRQQTESAAAIA 276 (398)
T ss_pred cccccCCccceEEEEEeCc--------HHHHHHHHHHHHHhCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHH
Confidence 9999999999975 44554 5554 34443 333435666666666555553 5666666678999999
Q ss_pred HHhhcCCCCcccc
Q 042445 155 DRLKEIPCITCPK 167 (246)
Q Consensus 155 ~~L~~~~~~~~~~ 167 (246)
+.|+++|++..+.
T Consensus 277 ~~L~~~p~v~~v~ 289 (398)
T PRK07504 277 DFLAGHPKVARVI 289 (398)
T ss_pred HHHHcCCCccEEE
Confidence 9999887765333
No 178
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.78 E-value=2e-17 Score=140.06 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=107.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++.+|+||+|.+.+ +++|.++|+++|+++|+|++|+...+.. ++ .+ ...+++.|+
T Consensus 116 ~~l~~~i~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~----~~-~~---g~Divv~S~ 184 (369)
T cd00614 116 EALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQR----PL-EL---GADIVVHSA 184 (369)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCC----hh-hh---CCcEEEecc
Confidence 4455556543 77899999999987 8899999999999999999998654321 11 11 234889999
Q ss_pred ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
||.++++| .+.||+++++. +++++++.... .+..+++....++.+.++. +..+.++..++++.+.+
T Consensus 185 tK~l~g~~~~~gG~v~~~~~-------~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t-----l~~r~~~~~~na~~la~ 252 (369)
T cd00614 185 TKYIGGHSDVIAGVVVGSGE-------ALIQRLRFLRLALGTILSPFDAWLLLRGLKT-----LPLRMERHSENALKVAE 252 (369)
T ss_pred ceeccCCCCceEEEEEeCcH-------HHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHH
Confidence 99998876 88999999763 67777776643 4446777777776666652 45567777889999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|+++|++..+..|
T Consensus 253 ~L~~~~~v~~V~~p 266 (369)
T cd00614 253 FLEKHPKVERVYYP 266 (369)
T ss_pred HHHcCCCccEEECC
Confidence 99988776544444
No 179
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.78 E-value=3.6e-17 Score=138.77 Aligned_cols=145 Identities=14% Similarity=0.208 Sum_probs=110.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ ++++||||||.+++ +++|.++|+++|+++|+|++|...... .++ .++. -++++|+
T Consensus 128 e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~----~pl-~~ga---Divv~S~ 196 (386)
T PRK08045 128 QALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPALQ----NPL-ALGA---DLVLHSC 196 (386)
T ss_pred HHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC----Cch-hhCC---CEEEeec
Confidence 3455555443 88999999999998 678888899999999999999865432 122 1222 2889999
Q ss_pred cccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.+++ ++.+.|++++.+. +++++++.... .+..++++.+..+.+.|+. +..+.++..+++..+.+
T Consensus 197 tK~l~G~~d~~~G~vi~~~~-------~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-----l~~R~~~~~~na~~la~ 264 (386)
T PRK08045 197 TKYLNGHSDVVAGVVIAKDP-------DVVTELAWWANNIGVTGGAFDSYLLLRGLRT-----LVPRMELAQRNAQAIVK 264 (386)
T ss_pred ceeccCCCCceeEEEEeCcH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-----HHHHHHHHHHHHHHHHH
Confidence 999874 5688999988553 77777765533 4557899999999888884 88888889999999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|+..|.+..+..|
T Consensus 265 ~L~~~p~v~~V~yp 278 (386)
T PRK08045 265 YLQTQPLVKKLYHP 278 (386)
T ss_pred HHHcCCCEeEEECC
Confidence 99988776544333
No 180
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.78 E-value=1.3e-17 Score=142.60 Aligned_cols=206 Identities=12% Similarity=0.039 Sum_probs=131.2
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ ++++|+||||.+.+ +++|.++|+++|+++++|+++.... .... +...+.-+++.|+
T Consensus 147 ~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~----~~~~---~~~~~~d~~~~s~ 216 (397)
T TIGR01976 147 DDLASLLSPRTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYAPH----GLID---VQATGADFLTCSA 216 (397)
T ss_pred HHHHHhcCCCceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhccc----cCCC---HHHcCCCEEEEec
Confidence 3455555543 88899999999986 8889999999999999999975311 1111 1112233666899
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc-----------CCCCchHHHHHHH---HHhhch--------
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS-----------SDPATFIQGAVPQ---ILEKTE-------- 135 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~q~~~~~---~l~~~~-------- 135 (246)
+|.+| .|+||+++++ ++++.+......+ ++.+.....++.. .+....
T Consensus 217 ~K~~g---~~~G~l~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~ 285 (397)
T TIGR01976 217 YKFFG---PHMGILWGRP--------ELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRR 285 (397)
T ss_pred hhhcC---CceEEEEEcH--------HHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchh
Confidence 99963 4689999988 7777665432111 0122222222333 332211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC---CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCC
Q 042445 136 ---EEFFSKIIDILRETADKCCDRLKEIPCITCPKK---PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI 209 (246)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~ 209 (246)
..+.++.+++..+.++.+.+.|++++++..+.. ...+.++.+.++.. +...+.+.|.++||.+..|.
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~gI~v~~~~ 358 (397)
T TIGR01976 286 ERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGL-------PPQRVVRRLADQGIDAWAGH 358 (397)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCc-------CHHHHHHHHHHCCeEEEeCc
Confidence 013566677778888899999988866764322 11344555555421 23445566788999999886
Q ss_pred CcC-----------CCCeEEEEeec--ChHHHHHHHHHH
Q 042445 210 TVG-----------LKDWLRITFAV--EPSALENGLGRM 235 (246)
Q Consensus 210 ~f~-----------~~~~iRls~~~--~~~~l~~~~~~l 235 (246)
.|. ..+++|+|+.. ++++++++++.|
T Consensus 359 ~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 359 FYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred cchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 653 14689999984 788888887653
No 181
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.78 E-value=1.9e-17 Score=142.95 Aligned_cols=204 Identities=19% Similarity=0.196 Sum_probs=138.0
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI 99 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~ 99 (246)
|. ..+.+++++|.++|++||+++|+||+|.++...|..+.. ..++ ....+.|+||.++ +|+++|++++++
T Consensus 221 G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~-~~~g---v~pDi~t~sK~lg-~G~pigav~~~~---- 291 (433)
T PRK08117 221 GYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAA-QTFG---VVPDIMTIAKGIA-SGLPLSAVVASK---- 291 (433)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhH-hhcC---CCCCEeehhhhcc-CCCcceeEEEcH----
Confidence 44 457899999999999999999999999988776653321 2222 1123579999986 789999999988
Q ss_pred cchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCceE
Q 042445 100 LQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMF 174 (246)
Q Consensus 100 ~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~ 174 (246)
++++.+... ...+++.||++++++.+.|+..... ...+.++++.+.+.+.|++ .+ +. ...+..|.+
T Consensus 292 ----~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~-~~-~~vrg~Gl~ 362 (433)
T PRK08117 292 ----ELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEE---KLLDNANEMGAYALERLEVLKEKHP-VI-GDVRGIGLM 362 (433)
T ss_pred ----HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCC-ce-eeeecCCcE
Confidence 888877543 3344578999999999999843221 2333344444445554443 32 21 123455777
Q ss_pred EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHhh
Q 042445 175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~~ 244 (246)
+.+.+..............+.+.+.++||.+.+... ..+.+|+++. .+++++++++++|.+++++..+
T Consensus 363 ~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~--~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 363 IGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGN--AGNVLRMIPPLTVTKEEIDEGLDILDEALTEYEA 432 (433)
T ss_pred EEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCC--CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHHhc
Confidence 777775321000001344556677889998876321 2579999965 4999999999999999987654
No 182
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.78 E-value=1.6e-17 Score=140.93 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=137.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.+.++ ++++|+||||.+.+ +++|.++|+++|+++++|++|...... ..+...+ ..+++.|+
T Consensus 130 ~~l~~~l~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~---~d~~~~s~ 199 (373)
T cd06453 130 EALEKLLTERTKLVAVTHVSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAGHMP----VDVQDLG---CDFLAFSG 199 (373)
T ss_pred HHHHHHhcCCceEEEEeCcccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcCcee----eeccccC---CCEEEecc
Confidence 3455555433 77899999999988 678999999999999999998743321 1111121 23666788
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh---------------------h-cCCCCchHHHHHHHHHhhch
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN---------------------I-SSDPATFIQGAVPQILEKTE 135 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~---------------------~-~~~~~~~~q~~~~~~l~~~~ 135 (246)
+|.+++ .++||+++++ ++++.+..... + ..+++.....++..++....
T Consensus 200 ~K~~~~--~g~g~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~ 269 (373)
T cd06453 200 HKMLGP--TGIGVLYGKE--------ELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLE 269 (373)
T ss_pred ccccCC--CCcEEEEEch--------HHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHH
Confidence 899876 4589999987 77766654321 0 01233344445455555322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC--
Q 042445 136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-- 212 (246)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-- 212 (246)
+..+++.++..++.++.+.+.|++++++..+..+ ..+.++++.++.. +...+.+.|.++||.+.+|..|.
T Consensus 270 ~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~l~~~gi~i~~g~~~~~~ 342 (373)
T cd06453 270 KIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-------HPHDVATILDQYGIAVRAGHHCAQP 342 (373)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-------CHHHHHHHHHHCCEEeccCccchhH
Confidence 3345677777788889999999888777643221 1244566656431 33445666778999998877543
Q ss_pred ------CCCeEEEEeec--ChHHHHHHHHHH
Q 042445 213 ------LKDWLRITFAV--EPSALENGLGRM 235 (246)
Q Consensus 213 ------~~~~iRls~~~--~~~~l~~~~~~l 235 (246)
.++++|+|++. ++++++++++.|
T Consensus 343 ~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 343 LMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred HHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 26899999995 888898888753
No 183
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.77 E-value=1.1e-16 Score=136.58 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=105.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+.+ +++|.++|+++|+++|+|++|..... ..++. ++. -+++.|.
T Consensus 136 ~~l~~~i~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~----~~pl~-~ga---Divv~S~ 204 (405)
T PRK08776 136 RSLADALAQSPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL----QKPLE-FGA---DLVLHST 204 (405)
T ss_pred HHHHHhcCcCCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc----CCccc-ccC---CEEEecC
Confidence 3455555443 88899999999854 89999999999999999999985332 12221 221 2889999
Q ss_pred ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.++++ ++..|++++++. ++.+++..... .+..++++.+.++.+.++ +++.+.+...+++..+.+
T Consensus 205 tK~l~g~~~~~~G~vv~~~~-------~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~-----tl~~r~~~~~~na~~la~ 272 (405)
T PRK08776 205 TKYINGHSDVVGGAVVARDA-------ELHQQLVWWANALGLTGSPFDAFLTLRGLR-----TLDARLRVHQENADAIAA 272 (405)
T ss_pred ceeecCCCCceEEEEEeCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhhhC-----cHHHHHHHHHHHHHHHHH
Confidence 9999876 478899888653 77777765533 333578888877765555 578888889999999999
Q ss_pred HhhcCCCCccccC
Q 042445 156 RLKEIPCITCPKK 168 (246)
Q Consensus 156 ~L~~~~~~~~~~~ 168 (246)
.|++.|.+..+..
T Consensus 273 ~L~~~p~v~~V~y 285 (405)
T PRK08776 273 LLDGHAAVNQVYY 285 (405)
T ss_pred HHHcCCCeeEEEC
Confidence 9998876654333
No 184
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.77 E-value=7.3e-17 Score=136.27 Aligned_cols=194 Identities=15% Similarity=0.203 Sum_probs=130.6
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc-CCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV-PGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g~r~G~ 90 (246)
++++|+||||.+.+ +++|.++|+++|+++|+|++|.... + ..++. ++. -++++|+||.+++ +|+++||
T Consensus 137 ~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~-~---~~p~~-~g~---Divv~S~sK~l~G~~g~~~G~ 205 (366)
T PRK07582 137 LAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATPL-G---QRPLE-LGA---DLVVASDTKALTGHSDLLLGY 205 (366)
T ss_pred EEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCcc-c---cCchh-cCC---cEEEecccccccCCCCeeEEE
Confidence 78899999997765 8999999999999999999997422 1 11221 221 2788999999865 6799999
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++++. ++.++++..... +..++++....+.+.+.. +..+.++.+++...+.+.|+++|.+..+..|
T Consensus 206 v~~~~~-------~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t-----l~~R~~~~~~na~~la~~L~~~p~v~~v~yp 273 (366)
T PRK07582 206 VAGRDP-------ELMAAVERWRLLAGAIPGPFEAWLAHRSLGT-----LGLRFARQCANALAVAELLAGHPAVRGVRYP 273 (366)
T ss_pred EEcCcH-------HHHHHHHHHHHHhCCCCCHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 998643 777777766443 446788888777777763 4555566778999999999988776543322
Q ss_pred C----------------CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----------------CCeE
Q 042445 170 E----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----------------KDWL 217 (246)
Q Consensus 170 ~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----------------~~~i 217 (246)
. .|-.+.++++ +.+.+.+++.+.++... +..++. ++.|
T Consensus 274 ~l~~~p~~~~~~~~~~~~gg~~s~~~~---------~~~~~~~~~~~l~~~~~-~~s~G~~~sl~~~~~~~~~~~~~~li 343 (366)
T PRK07582 274 GLPGDPAHEVAARQMRRFGGLVSFELA---------DAAAAERFVAASRLVVA-ATSFGGVHTSADRRARWGDAVPEGFV 343 (366)
T ss_pred CCCCCccHHHHHhhCCCCcceEEEEeC---------CHHHHHHHHHhCCccee-cccCCCccchhhhHHHcCCCCCCCeE
Confidence 1 2334444454 23445666777776443 222221 4679
Q ss_pred EEEeecChHHHHHHHHHHHHHHH
Q 042445 218 RITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 218 Rls~~~~~~~l~~~~~~l~~~~~ 240 (246)
|+|++.++ .+..++.|.++++
T Consensus 344 R~svGlE~--~~dli~dl~~al~ 364 (366)
T PRK07582 344 RLSCGIED--TDDLVADLERALD 364 (366)
T ss_pred EEEeccCC--HHHHHHHHHHHHh
Confidence 99999743 2445556666654
No 185
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.77 E-value=5.1e-17 Score=138.24 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=99.3
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+.+ +++|.++|+++|+++|+|++|....... ++ ..+ ..++++|+
T Consensus 137 ~~l~~~i~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~----pl-~~g---~Divv~S~ 205 (390)
T PRK08133 137 DAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ----PL-KLG---ADVVIHSA 205 (390)
T ss_pred HHHHHhcCcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hhC---CcEEEeec
Confidence 3455566554 77899999999986 7899999999999999999987544321 11 112 23789999
Q ss_pred ccccccCCceEE-EEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLG-WLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g~r~G-~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
||.++++|.++| |+++++ ++++.+..... ....+++..+.++.+-++ .+..+.++..+++..+.+
T Consensus 206 sK~~~g~g~~~GG~vv~~~--------~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~-----tl~~R~~~~~~~a~~la~ 272 (390)
T PRK08133 206 TKYLDGQGRVLGGAVVGSK--------ELMEEVFGFLRTAGPTLSPFNAWVFLKGLE-----TLSLRMEAHSANALALAE 272 (390)
T ss_pred ceeecCCcceEeEEEEcCH--------HHHHHHHHHHHHhCCCCCHHHHHHHHcccc-----hHHHHHHHHHHHHHHHHH
Confidence 999999999985 455555 77777765433 332445555444433332 466666667789999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|++.|++..+..|
T Consensus 273 ~L~~~p~v~~v~yp 286 (390)
T PRK08133 273 WLEAHPGVERVFYP 286 (390)
T ss_pred HHHhCCCeeEEECC
Confidence 99988776543333
No 186
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.77 E-value=6.3e-17 Score=135.29 Aligned_cols=189 Identities=18% Similarity=0.133 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHcCCEEEEccccCCcccCCCCCcccc--ccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhH
Q 042445 28 FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMG--VFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGI 105 (246)
Q Consensus 28 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~ 105 (246)
.+++|++++++|++++++||+|+...+++.+-.... .+.+.+..|.++||||+||..| ||+.++. .+
T Consensus 189 pL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~--------~~ 257 (388)
T COG0156 189 PLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGSA--------AL 257 (388)
T ss_pred CHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCcH--------HH
Confidence 499999999999999999999999998865444433 3344556899999999999999 9999999 99
Q ss_pred HHHHHHH-hh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccc
Q 042445 106 VDSIKIF-LN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYS 182 (246)
Q Consensus 106 ~~~l~~~-~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~ 182 (246)
++.+++. .. ++++.+|....++..+++ ......+.+++++++.+.+.+.++.. ++.. .+.....+.+.+.+.
T Consensus 258 ~d~L~~~ar~~ifStalpP~~aaa~~~al~--~l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~--~~s~s~I~pv~~gd~ 332 (388)
T COG0156 258 IDYLRNRARPFIFSTALPPAVAAAALAALR--ILEEGPERRERLQELAAFFRSLLKAL-GLVL--LPSESPIIPVILGDE 332 (388)
T ss_pred HHHHHHhCCceeccCCCCHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHhc-CCcc--CCCCCCeeeeEeCCH
Confidence 9999886 44 333566766666777776 34456677788888888888776665 4432 455566666656553
Q ss_pred cccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445 183 LLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAF 238 (246)
Q Consensus 183 ~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~ 238 (246)
. ...+....++ +.||.+.+..+... ...+|++++. ++++++.+++.|.+.
T Consensus 333 ~-----~a~~~s~~l~-~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 333 E-----RALEASRALL-EEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred H-----HHHHHHHHHH-HCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 2 1455555544 55999987655443 5889999995 899999988888754
No 187
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.77 E-value=3.8e-17 Score=140.00 Aligned_cols=198 Identities=15% Similarity=0.097 Sum_probs=132.6
Q ss_pred CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445 18 FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 18 NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~ 95 (246)
++.|. ++|.+++++|.++|++||+++|+||+++++...|..+.. ...+.++ +.++||.++..|+|+|++++++
T Consensus 205 g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PD-----i~~~~K~lg~~G~pigav~~~~ 279 (412)
T TIGR02407 205 GEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPD-----IVCLSKSISGYGLPLALTLIKP 279 (412)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCC-----EEEechhccCCccceeEEEEch
Confidence 67787 678899999999999999999999999988666543321 1223332 4468899754499999999987
Q ss_pred CCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhh-ch----HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 96 PNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEK-TE----EEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~-~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
++ +.+... ...+++.|+++..++.+.++. .. .+++.+..+.++++.+.+. ++++++. ...+
T Consensus 280 --------~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~---~~~~~~~-~~vr 346 (412)
T TIGR02407 280 --------EL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIV---AEYPELI-KQVR 346 (412)
T ss_pred --------hh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH---hhCCCce-Eeee
Confidence 54 433222 333557788877776666662 21 1233333333333333322 2344322 2345
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
..|+++|++++... ....+...+.++||.+.+...+ ++.||++... ++++++++++.|.+.+++
T Consensus 347 g~Gl~~~l~l~~~~------~~~~~~~~~~~~Gv~v~~~~~~--~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 347 GRGLMQGIECGDGD------LAGKIAKAAFENGLIIETSGPN--DEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred cceeEEEEEecChH------HHHHHHHHHHHCCCEEeccCCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 67899999997532 3445566777899999874322 5789999884 999999999999998853
No 188
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.77 E-value=4.5e-17 Score=138.06 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=106.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++||||||.+++ +++|.++|+++|+++|+|++|..+.... ++ .++. .++++|+
T Consensus 127 ~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~----pl-~~ga---Divv~S~ 195 (382)
T TIGR02080 127 QALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQN----PL-ALGA---DLVLHSC 195 (382)
T ss_pred HHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hhCC---CEEEeec
Confidence 3455666543 88899999999988 6788888999999999999998654321 11 1221 2888999
Q ss_pred cccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
||.+++ +|++.|++++.+. ++.++++..... +..++++....+.+-++ .+..+.++..+++..+.+
T Consensus 196 sK~l~G~~~~~~G~i~~~~~-------~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~-----tl~~R~~~~~~na~~~a~ 263 (382)
T TIGR02080 196 TKYLNGHSDVIAGAVIAKDP-------QVAEELAWWANNLGVTGGAFDSYLTLRGLR-----TLVARMRLQQRNAQAIVE 263 (382)
T ss_pred ceeccCCCCceeEEEEeCCH-------HHHHHHHHHHHccCCCCCHHHHHHHHcccc-----hHHHHHHHHHHHHHHHHH
Confidence 999874 6789999988653 777878766443 44678888777755554 355556677899999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|+..|.+..+..|
T Consensus 264 ~L~~~p~v~~V~yP 277 (382)
T TIGR02080 264 YLQTQPLVKKIYYP 277 (382)
T ss_pred HHHhCCCeeEEECC
Confidence 99987766543333
No 189
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.76 E-value=7.2e-17 Score=139.53 Aligned_cols=210 Identities=20% Similarity=0.153 Sum_probs=139.6
Q ss_pred cccCCcCCCc-c-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVG-S-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG-~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
++.-|-++.| . .++++++++|.++|++||+++|.||++.++...|..+ ....++-...++ +++|.++ .|+++|
T Consensus 223 vi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~f-a~~~~gv~PDiv---~~gK~l~-~G~Pi~ 297 (443)
T PRK06058 223 VIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWF-ACEHEGIVPDLI---TTAKGIA-GGLPLS 297 (443)
T ss_pred EEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhh-HHHhcCCCCCEE---EEccccc-CCCccE
Confidence 6667766654 3 3568899999999999999999999999987766433 222222222333 4579986 789999
Q ss_pred EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCIT 164 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~ 164 (246)
++++++ ++++.+... ...+++.|+++++++.+.|+...+. ...+..+++.+.+.+.|++ .+.+.
T Consensus 298 av~~~~--------~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~ 366 (443)
T PRK06058 298 AVTGRA--------EIMDAPHPGGLGGTYGGNPVACAAALAAIETIEED---DLVARARQIEALMTDRLRALAAEDDRIG 366 (443)
T ss_pred EEEEcH--------HHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHhhCCcEE
Confidence 999998 888877644 4456689999999999999853222 2334444455555555554 33222
Q ss_pred cccCCCCceEEEEEecccccc-CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445 165 CPKKPEGSMFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 165 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~ 241 (246)
-+...|.++ .+.+....-. ........+...+.++||.+.|+..+ .+++|+... .+++++++++++|.+++++
T Consensus 367 -~vrg~G~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~--~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 367 -DVRGRGAMI-AIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTY--GNVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred -eeeccceEE-EEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCC--CCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 234454444 4455321100 00011233445566899999986544 478999766 4999999999999999865
No 190
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.76 E-value=1.9e-16 Score=135.15 Aligned_cols=144 Identities=15% Similarity=0.165 Sum_probs=107.4
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+.+ +++|.++|+++|+++|+|++|+...+.. + + .++ .-+++.|+
T Consensus 146 ~~l~~ai~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~-~---~-~~g---aDivv~S~ 214 (403)
T PRK07810 146 SQWEEALSVPTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQR-G---L-PLG---ADVVVYSG 214 (403)
T ss_pred HHHHHhcCcCceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccCC-h---h-hcC---CcEEEccC
Confidence 4566666654 88899999999986 8899999999999999999998655432 1 1 112 23889999
Q ss_pred ccccccCCceE-EEEEeeCCCCCcchhhHHH-HHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVD-SIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC 154 (246)
Q Consensus 78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~-~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (246)
+|.+++.|.++ |++++++ +.+. .++.. ...+..++++.++++.+.|+. +..+.++..++...+.
T Consensus 215 tK~l~g~g~~~gG~v~~~~--------~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t-----l~~R~~~~~~~a~~~a 281 (403)
T PRK07810 215 TKHIDGQGRVLGGAILGDR--------EYIDGPVQKLMRHTGPALSAFNAWVLLKGLET-----LALRVRHSNASALRIA 281 (403)
T ss_pred CceecCCcCceeEEEEeCh--------HHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc-----HHHHHHHHHHHHHHHH
Confidence 99999999887 7777766 5554 45544 334457888888888777774 6777777788888899
Q ss_pred HHhhcCCCCccccCC
Q 042445 155 DRLKEIPCITCPKKP 169 (246)
Q Consensus 155 ~~L~~~~~~~~~~~~ 169 (246)
+.|+++|.+..+..|
T Consensus 282 ~~L~~~p~v~~V~yP 296 (403)
T PRK07810 282 EFLEGHPAVRWVRYP 296 (403)
T ss_pred HHHhcCCCccEEECC
Confidence 999988877654433
No 191
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.76 E-value=8.7e-17 Score=135.88 Aligned_cols=203 Identities=14% Similarity=0.063 Sum_probs=127.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||||...+ +++|.++|+++|+++|+|++|..... ++ ....+ +..+++.|++|.+++ +.|+||+
T Consensus 144 ~l~~p~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~---~~-~~~~~---~~d~~~~s~~K~l~~-~~~~G~l 212 (361)
T cd06452 144 LLTHVDGNYGNLHD---AKKIAKVCHEYGVPLLLNGAYTVGRM---PV-SGKEL---GADFIVGSGHKSMAA-SAPIGVL 212 (361)
T ss_pred EEECCCCCCeeecc---HHHHHHHHHHcCCeEEEECCcccCCc---CC-CHHHc---CCCEEEecCCccccC-CCCeEEE
Confidence 88999999998754 88999999999999999999984321 11 11112 245899999999864 4599999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhc---------CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNIS---------SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC 162 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 162 (246)
++++ ++++++......+ .+.+.....++...+.. ..+++++..+. .++++.+.+.|++++|
T Consensus 213 ~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~~~~-~~~~~~l~~~L~~l~g 282 (361)
T cd06452 213 ATTE--------EWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPH-VKERVKRWDEE-VEKARWFVAELEKIEG 282 (361)
T ss_pred EECH--------HHHHHHhccccccccceeeeeccccCchHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHhcCCC
Confidence 9988 8888886643211 01112223344444432 12334333333 4456788899999888
Q ss_pred Ccccc-CCCCceEEEEEeccccc--c-CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHHHHHHH
Q 042445 163 ITCPK-KPEGSMFVMVKLNYSLL--E-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGLGRMKA 237 (246)
Q Consensus 163 ~~~~~-~~~~g~~~~~~~~~~~~--~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~~~l~~ 237 (246)
+..+. .+....++.++.+.-.. . ...+..+ +.+.|+++||.+.+ .+..+++|++.. .++++++.+++.|++
T Consensus 283 ~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~~gI~~~~---~~~~~~~ri~~~g~~~e~~~~l~~al~~ 358 (361)
T cd06452 283 IKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYF-LYSELKKRGIHGIK---PGLTRYFKLSTYGLTWEQVEYVVDAFKE 358 (361)
T ss_pred eEEECCCCCCCceEEEEcCCcchhhhhccccchh-HHHHHHHcCceEEc---CCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 76432 23455666665541100 0 0001123 45556778998532 223678999984 388889999988876
Q ss_pred HH
Q 042445 238 FY 239 (246)
Q Consensus 238 ~~ 239 (246)
+.
T Consensus 359 ~~ 360 (361)
T cd06452 359 IA 360 (361)
T ss_pred Hh
Confidence 53
No 192
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.76 E-value=2.2e-16 Score=133.73 Aligned_cols=145 Identities=12% Similarity=0.163 Sum_probs=107.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ ++++||||||.+++ +++|.++|+++|+++|+|++|....+.. +. .++. -++++|+
T Consensus 129 e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~~-pl----~~Ga---Divv~S~ 197 (388)
T PRK08861 129 AALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQK-PL----ELGA---DFVIHST 197 (388)
T ss_pred HHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccCC-Cc----ccCC---CEEEeec
Confidence 3455555543 88899999999998 6788888999999999999998655432 11 1222 2899999
Q ss_pred ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.++++ +...|++++.+. ++.++++..+. .+..++|.....+.+-|+. +.-+.++..++...+.+
T Consensus 198 tK~l~G~~d~~gG~i~~~~~-------~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-----l~lR~~~~~~~a~~~a~ 265 (388)
T PRK08861 198 TKYINGHSDVIGGVLITKTK-------EHAEELAWWGNCIGATGTPFDSYMTLRGIRT-----LGARMRVHEESAQQILA 265 (388)
T ss_pred ceeccCCCcceeEEEEecHH-------HHHHHHHHHHhccCCCCChHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHH
Confidence 9998875 478899887652 66677765544 3446789888888777775 66677777889999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|+..|.+..+..|
T Consensus 266 ~L~~~p~v~~V~yP 279 (388)
T PRK08861 266 YLQTQSLVGTIYHP 279 (388)
T ss_pred HHHhCCCeeEEECC
Confidence 99988776544444
No 193
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=99.76 E-value=8.9e-18 Score=134.86 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=137.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++||||.|.. .+.++ +..+..+|-|-+|..-.|++ ..... +.-|.+.|+||.-|-+|.|+||.
T Consensus 142 lVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTp-----I~~~a--D~DiMLFT~SK~TGHAGSR~GWA 206 (363)
T PF04864_consen 142 LVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTP-----ITAPA--DHDIMLFTLSKLTGHAGSRFGWA 206 (363)
T ss_dssp EEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS--------S-B----SEEEEEHHHHCS-GGG-EEEE
T ss_pred EEeCCCCCcccc-----cchhc---CCCCcceeeeeeeecccccc-----cCCCC--CCceEEEEEecccCcccccccee
Confidence 899999999986 34444 55567789999999755553 22222 23389999999999999999999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchH---------HHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEE---------EFFSKIIDILRETADKCCDRLKEIP 161 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~L~~~~ 161 (246)
+..+. ++..+|..+... +.++|.-+|.-++.+|....+ ....--++.+++|.+.|.+.+....
T Consensus 207 lVKD~-------~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~ 279 (363)
T PF04864_consen 207 LVKDE-------EVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASK 279 (363)
T ss_dssp EES-H-------HHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred eecCH-------HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99885 888888888554 558999999999999884332 2566678889999999999997642
Q ss_pred CCccc-cC-----------CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-CCeEEEEeecChHHH
Q 042445 162 CITCP-KK-----------PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-KDWLRITFAVEPSAL 228 (246)
Q Consensus 162 ~~~~~-~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~~~~~l 228 (246)
-+..- .. ...+-|.|++++.. ..+.|...|++.||..+.|..|+. +.++|+|+..+++++
T Consensus 280 rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e-------ed~DC~~~l~~~~I~tr~G~~fga~~ryVRlSml~~~d~F 352 (363)
T PF04864_consen 280 RFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE-------EDEDCYAVLREAKIITRSGVLFGADSRYVRLSMLKRDDDF 352 (363)
T ss_dssp SEEE---SCEEETTTTCEEE---SEEEEEESSC-------GGSSHHHHHHCTTEEEEEGGGGTS-TTEEEEESSS-HHHH
T ss_pred ceecCcCCchhccccccccCCCCCeEEEecCCc-------ccccHHHHHHhCCcccCCCCccCCCCCeEEEeccCCHHHH
Confidence 22210 11 12578999998754 335678899999999999999998 899999999999999
Q ss_pred HHHHHHHHHH
Q 042445 229 ENGLGRMKAF 238 (246)
Q Consensus 229 ~~~~~~l~~~ 238 (246)
+..+++|...
T Consensus 353 d~l~~rL~~l 362 (363)
T PF04864_consen 353 DQLLERLSKL 362 (363)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 194
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.75 E-value=1.1e-16 Score=136.22 Aligned_cols=218 Identities=15% Similarity=0.080 Sum_probs=140.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++++||||.+++ +++|.++|+++|+++++|++++... ....+...+ --+++.|.
T Consensus 127 ~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~~~~~g~----~~~~~~~~~---~D~~~~s~ 196 (379)
T TIGR03402 127 EELRAAITDDTALVSVMWANNETGTIFP---IEEIGEIAKERGALFHTDAVQAVGK----IPIDLKEMN---IDMLSLSG 196 (379)
T ss_pred HHHHHhcCCCcEEEEEEcccCCeeeccc---HHHHHHHHHHcCCEEEEECcccccc----cccCcccCC---CCEEEEcH
Confidence 4455666544 77889999999999 5678999999999999999997422 111122221 22667778
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
.|.++.+| +|+++..+..... +.+............+.+.....++.++++. ...++++..++.++.++.+.+.|
T Consensus 197 ~K~~gp~G--~g~l~v~~~~~~~--p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~-~~~~~~~~~~~~~~l~~~l~~~l 271 (379)
T TIGR03402 197 HKLHGPKG--VGALYIRKGTRFR--PLLRGGHQERGRRAGTENVPGIVGLGKAAEL-ATEHLEEENTRVRALRDRLEAGL 271 (379)
T ss_pred HHcCCCCc--eEEEEECCCCCCC--CcccCCccCCCcCCCCccHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Confidence 89776666 7888776631100 0010000000011224566666666666664 23467777788888999999999
Q ss_pred hc-CCCCccccCCC----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-------------------
Q 042445 158 KE-IPCITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------------------- 213 (246)
Q Consensus 158 ~~-~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------------------- 213 (246)
++ ++++.....+. +...++ ++.. +. +.+...|.++||.+.+|..|..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~-~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~ 342 (379)
T TIGR03402 272 LARIPDARLNGDPTKRLPNTVNIS--FEYI------EG-EAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAA 342 (379)
T ss_pred HhhCCCEEEeCCCccCCCCEEEEE--ecCC------CH-HHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhc
Confidence 85 77766432221 123333 3322 23 3445567889999999887643
Q ss_pred CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 214 KDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 214 ~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
.+.+|+|++. ++++++++++.|++.++++.
T Consensus 343 ~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~ 374 (379)
T TIGR03402 343 HGSIRFSLSRYNTEEDIDYVLEVLPPIIARLR 374 (379)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2689999995 89999999999999887654
No 195
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.75 E-value=1.7e-16 Score=137.12 Aligned_cols=213 Identities=15% Similarity=0.132 Sum_probs=141.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+-..|+|+....+|++++++|.++|++||+++|.||++.++...+..+ ....++....+++ +||.++. |+++|++
T Consensus 212 ~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~gv~PDiv~---~gK~l~~-G~Pigav 286 (442)
T TIGR00709 212 LEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMF-AFEHAGIEPDFVV---MSKAVGG-GLPLAVL 286 (442)
T ss_pred EccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh-HHHHcCCCCcEEE---EcccccC-CcccEEE
Confidence 445666676667899999999999999999999999999998776433 3333333323333 7999876 8999999
Q ss_pred EeeCCCCCcchhhHHHHHHH-HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccc
Q 042445 92 VTSDPNGILQDSGIVDSIKI-FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCP 166 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~ 166 (246)
++++ + ++.+.. ....+++.||++++++.+.|+...+. ...+..+++.+.+.+.|++ .|.+..
T Consensus 287 ~~~~--------~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~- 353 (442)
T TIGR00709 287 LIAP--------E-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDD---NLAQNAQERGERITSFLDDMIKEHPCIGN- 353 (442)
T ss_pred EEch--------H-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeee-
Confidence 9987 5 343322 23345689999999999999753322 2233444455555555543 443321
Q ss_pred cCCCCceEEEEEeccccc-cC----CC---ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLL-EG----IN---SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMK 236 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~-~~----~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~ 236 (246)
+. .-|.++.+++..... ++ .. +....+...+.++||++.+.... .+.+|+.... ++++++++++++.
T Consensus 354 vr-G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~--~~~l~~~Ppl~it~~ei~~~~~~l~ 430 (442)
T TIGR00709 354 VR-GRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGRE--GEVFRLLCPITIDQEECEEGISRFK 430 (442)
T ss_pred ee-ccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCC--CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 22 346677777743210 00 00 11344556677899998764321 5789998874 9999999999999
Q ss_pred HHHHHHhhc
Q 042445 237 AFYDRHAEK 245 (246)
Q Consensus 237 ~~~~~~~~~ 245 (246)
+++++..++
T Consensus 431 ~~l~~~~~~ 439 (442)
T TIGR00709 431 QAVEEALAE 439 (442)
T ss_pred HHHHHHHHH
Confidence 999876543
No 196
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.75 E-value=2.4e-16 Score=133.78 Aligned_cols=144 Identities=15% Similarity=0.230 Sum_probs=100.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ ++.+|+||+|.+.+ +++|.++|+++|+++|+|++|..+.... ++ ..+ .-+++.|+
T Consensus 130 ~~l~~~i~~~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~~----pl-~~g---~Divv~S~ 198 (380)
T TIGR01325 130 NAWEAAVKPNTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQQ----PL-KLG---ADVVVYSA 198 (380)
T ss_pred HHHHHhcCCCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccCC----ch-hhC---CCEEEeec
Confidence 3455555443 88899999999976 8899999999999999999998654321 11 122 23788899
Q ss_pred ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.++++|.++ |++++++ ++++.++.... .+..+++....++.+.++ .+..+.++..++++.+.+
T Consensus 199 sK~l~g~g~~~gG~vv~~~--------~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~-----tl~~r~~~~~~~a~~la~ 265 (380)
T TIGR01325 199 TKHIDGQGRVMGGVIAGSE--------ELMAEVAVYLRHTGPAMSPFNAWVLLKGLE-----TLSLRMQKQFDSALAIAE 265 (380)
T ss_pred cceecCCCCeEEEEEEeCH--------HHHHHHHHHHHhhCCCCCHHHHHHHHhccC-----cHHHHHHHHHHHHHHHHH
Confidence 99999999887 6666666 88887776533 333445555444433333 355667778889999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|+++|++..+..|
T Consensus 266 ~L~~~p~v~~V~yp 279 (380)
T TIGR01325 266 WLQAQPQVQAVYYP 279 (380)
T ss_pred HHHcCCCccEEECC
Confidence 99988776543333
No 197
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.75 E-value=3.8e-16 Score=132.92 Aligned_cols=144 Identities=16% Similarity=0.175 Sum_probs=101.3
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ ++++|+||+|.+.+ +++|.++|+++|+++|+|++|....... ++. .+ .-+++.|+
T Consensus 135 e~l~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~----~~~-~g---~Divv~S~ 203 (391)
T TIGR01328 135 EEVKAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLTN----PVA-LG---VDVVVHSA 203 (391)
T ss_pred HHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccCC----chh-cC---CCEEEccc
Confidence 4455666544 78899999999987 7888999999999999999998654321 111 11 22888999
Q ss_pred ccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHh-h-h-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFL-N-I-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC 153 (246)
Q Consensus 78 sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~-~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (246)
||.++++|.++ |++++++ ++++.++... . . +..+++...+.+.+.|+. +..+.++.+++.+.+
T Consensus 204 sK~lgg~g~~~gG~v~~~~--------~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~t-----l~~r~~~~~~na~~l 270 (391)
T TIGR01328 204 TKYIGGHGDVVAGLICGKA--------ELLQQIRMVGIKDMTGSVISPFDAWLILRGLKT-----LNIRMKRHSENAMKV 270 (391)
T ss_pred cccccCCCCceEEEEEcCH--------HHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCc-----HHHHHHHHHHHHHHH
Confidence 99999999875 5666655 8888887542 2 2 235566666665555542 455566778889999
Q ss_pred HHHhhcCCCCccccCC
Q 042445 154 CDRLKEIPCITCPKKP 169 (246)
Q Consensus 154 ~~~L~~~~~~~~~~~~ 169 (246)
.+.|+++|++..+..|
T Consensus 271 a~~L~~~p~v~~v~yp 286 (391)
T TIGR01328 271 AEYLKSHPAVEKVYYP 286 (391)
T ss_pred HHHHHhCCCccEEECC
Confidence 9999888776544333
No 198
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.74 E-value=3.4e-16 Score=133.68 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=100.9
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++.+|+||||.+.+ +++|.++|+++|+++|+|++|+..... . ++. ++ ..++++|+
T Consensus 141 ~~l~~~i~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~-~---~l~-~g---~Di~v~S~ 209 (403)
T PRK07503 141 AALKAAISDKTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQ-R---PLE-LG---ADLVVHSA 209 (403)
T ss_pred HHHHHhcCccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC-C---chh-hC---CCEEEccc
Confidence 4556666544 77899999999987 889999999999999999999865432 1 111 22 23899999
Q ss_pred ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH--hh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF--LN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC 153 (246)
Q Consensus 78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (246)
||.++++| .+.|+++.++ +++++++.. .. .+..++++.+..+.+.|+ .+..+.++..++...+
T Consensus 210 tK~l~g~gd~~gG~v~~~~--------~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~-----tl~~r~~~~~~na~~~ 276 (403)
T PRK07503 210 TKYLGGHGDITAGLVVGGK--------ALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK-----TLALRMDRHCASAQAV 276 (403)
T ss_pred cccccCCCceeEEEEEcCH--------HHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc-----hHHHHHHHHHHHHHHH
Confidence 99999876 7888888666 888888643 32 244677777776665555 3555555566888888
Q ss_pred HHHhhcCCCCcc
Q 042445 154 CDRLKEIPCITC 165 (246)
Q Consensus 154 ~~~L~~~~~~~~ 165 (246)
.+.|+++|.+..
T Consensus 277 a~~L~~~p~v~~ 288 (403)
T PRK07503 277 AEWLARHPAVEL 288 (403)
T ss_pred HHHHHhCCCccE
Confidence 899988776553
No 199
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.74 E-value=3.1e-16 Score=133.37 Aligned_cols=145 Identities=18% Similarity=0.179 Sum_probs=101.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ ++++|+||||.+.+ +++|.++|+++|+++|+|++|+...... ++. .+ .-+++.|+
T Consensus 137 e~l~~~i~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~----p~~-~g---aDivv~S~ 205 (388)
T PRK07811 137 DAVRAAITPRTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQQ----PLA-LG---ADVVVHST 205 (388)
T ss_pred HHHHHhcCcCCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccCC----chh-hC---CcEEEecC
Confidence 4455555544 77899999998754 8899999999999999999998654321 111 12 22899999
Q ss_pred ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.++++| .+.||+++++. ++.+.++..... +...++.....+.+.|+ .+..+.++.+++.+.+.+
T Consensus 206 sK~l~g~~~~~gG~vv~~~~-------~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~-----tl~~R~~~~~~na~~la~ 273 (388)
T PRK07811 206 TKYIGGHSDVVGGALVTNDE-------ELDEAFAFLQNGAGAVPGPFDAYLTLRGLK-----TLAVRMDRHSENAEAVAE 273 (388)
T ss_pred ceeecCCCCcEEEEEEECCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhccC-----cHHHHHHHHHHHHHHHHH
Confidence 99998865 67899998763 666666655443 32455665555544444 266666667889999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|+++|++..+..|
T Consensus 274 ~L~~~p~v~~V~yP 287 (388)
T PRK07811 274 FLAGHPEVSTVLYP 287 (388)
T ss_pred HHHhCCCeeEEECC
Confidence 99988876544433
No 200
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.74 E-value=5.3e-16 Score=132.19 Aligned_cols=215 Identities=11% Similarity=0.061 Sum_probs=138.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC--CCCccccccCC-cccEEEEcccccccccCCceE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN--TPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRL 88 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~ 88 (246)
++.++.||+|.+.+ ++++.++|++||+++|+||+|+....+. .+......+.+ .+..+++.|+||.++..|
T Consensus 143 i~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g--- 216 (392)
T PLN03227 143 VVEGLYKNTGTLAP---LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG--- 216 (392)
T ss_pred EEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC---
Confidence 66778899999999 7899999999999999999998333322 22211111222 233588888999976555
Q ss_pred EEEEeeCCCCCcchhhHHHHHHHH-hhhcCC--CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445 89 GWLVTSDPNGILQDSGIVDSIKIF-LNISSD--PATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC 165 (246)
Q Consensus 89 G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 165 (246)
|++++++ ++++.++.. ...+++ .+|..+.++...+.... ..++..+.++++.+++.+.|++. ++..
T Consensus 217 g~v~~~~--------~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~--~~~~~~~~l~~~~~~l~~~L~~~-~~~~ 285 (392)
T PLN03227 217 GMTVGSE--------EVVDHQRLSGSGYCFSASAPPFLAKADATATAGEL--AGPQLLNRLHDSIANLYSTLTNS-SHPY 285 (392)
T ss_pred cEEecCH--------HHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHhc-CCcc
Confidence 8988887 888777644 222223 34666666665664211 13456777888888999988752 2111
Q ss_pred cc---------CCCCceEEEEEeccccccC-CCC--hHHHHHHHHHhcCeEEecCC-------CcCCCCeEEEEeec--C
Q 042445 166 PK---------KPEGSMFVMVKLNYSLLEG-INS--DMEFALKLAKEESVIVLPGI-------TVGLKDWLRITFAV--E 224 (246)
Q Consensus 166 ~~---------~~~~g~~~~~~~~~~~~~~-~~~--~~~~~~~ll~~~gi~v~pg~-------~f~~~~~iRls~~~--~ 224 (246)
+. ....+..+.+.+.+..... ..+ ....+.+.+.++|+.+.+.. .+-++..+|+++.. +
T Consensus 286 ~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t 365 (392)
T PLN03227 286 ALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHT 365 (392)
T ss_pred ccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCC
Confidence 11 1123556666664321000 000 11355667778999987522 12226789999995 9
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 042445 225 PSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 225 ~~~l~~~~~~l~~~~~~~~ 243 (246)
+++++++++.|++++++..
T Consensus 366 ~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 366 REDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 201
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.74 E-value=8e-17 Score=135.64 Aligned_cols=212 Identities=18% Similarity=0.202 Sum_probs=135.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+.+ +++|+++|+++|+++|+|++|....+. .++. .+ --+++.|+
T Consensus 127 ~~l~~~i~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~----~pl~-~g---aDivv~S~ 195 (364)
T PRK07269 127 EELIAAIEEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQ----RPIE-LG---ADIVLHSA 195 (364)
T ss_pred HHHHHhcCcCceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC----Cchh-hC---CcEEEecC
Confidence 3455666554 78999999998874 999999999999999999998643322 1221 12 22889999
Q ss_pred ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.++++| .-.|++++++. ++.++++..+.. +..++++..+.+.+.|+. +..+.++.++++..+.+
T Consensus 196 tK~l~g~~d~~gG~v~~~~~-------~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~t-----L~~r~~~~~~na~~~a~ 263 (364)
T PRK07269 196 TKYLSGHNDVLAGVVVTNDL-------ELYEKLFYNLNTTGAVLSPFDSYLLMRGLKT-----LSLRMERSTANAQEVVA 263 (364)
T ss_pred ceeccCCCcccceEEEeCcH-------HHHHHHHHHHHHhCCCCCHHHHHHHHcCCCc-----HHHHHHHHHHHHHHHHH
Confidence 99988755 34578777553 777777755433 446788888877777774 77777778999999999
Q ss_pred HhhcCCCCcccc-CCCCceEEEEEecccc-cc---CCCChHHHHHHHHHhcCeEEecCCCcCC-------------CCeE
Q 042445 156 RLKEIPCITCPK-KPEGSMFVMVKLNYSL-LE---GINSDMEFALKLAKEESVIVLPGITVGL-------------KDWL 217 (246)
Q Consensus 156 ~L~~~~~~~~~~-~~~~g~~~~~~~~~~~-~~---~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------~~~i 217 (246)
.|++.|.+..+. ++.||++.+. +.... .. +..+....+..+...+++.+.|+..+.. ++.|
T Consensus 264 ~L~~~p~v~~v~ypg~gg~~sf~-~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~li 342 (364)
T PRK07269 264 FLKKSPAVKEVLYTGKGGMISFK-VADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYGLTDDLL 342 (364)
T ss_pred HHHhCCCccEEeCCCcCcEEEEE-ECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcCCCCCeE
Confidence 999988776555 4556655554 43210 00 0000111122222334555556433211 5789
Q ss_pred EEEeecChHHHHHHHHHHHHHH
Q 042445 218 RITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 218 Rls~~~~~~~l~~~~~~l~~~~ 239 (246)
|+|++.++ .+..++-|.+++
T Consensus 343 RlsvGlE~--~~dli~dl~~al 362 (364)
T PRK07269 343 RLSIGIED--ARDLIADLKQAL 362 (364)
T ss_pred EEEeccCC--HHHHHHHHHHHh
Confidence 99999742 334455555554
No 202
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.74 E-value=3.9e-16 Score=133.57 Aligned_cols=208 Identities=13% Similarity=0.032 Sum_probs=145.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++++||||.+++.+++.++++ |+++|+++|+|++++... ....+..+ +.-+++.|.+|.+++|. ++||+
T Consensus 142 ~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s~g~----~~id~~~~---~~D~~~~s~~K~l~~P~-G~G~l 212 (401)
T PLN02409 142 CVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSSIGA----LDFRMDEW---GVDVALTGSQKALSLPT-GLGIV 212 (401)
T ss_pred EEEeecccccccCCHHHHHHHHh-hhccCcEEEEEcccccCC----cccccccc---CccEEEEcCccccCcCC-Cccee
Confidence 77888899999999666666655 999999999999987321 11111112 22366677799986643 69999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhh------------------h-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLN------------------I-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADK 152 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~------------------~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (246)
+.++ +.++++..... . .++++...+.++..+++...+..+++.+++.++.++.
T Consensus 213 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~ 284 (401)
T PLN02409 213 CASP--------KALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEA 284 (401)
T ss_pred EECH--------HHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9988 77777653210 0 1144555677777777743455688888999999999
Q ss_pred HHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHH
Q 042445 153 CCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSA 227 (246)
Q Consensus 153 l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~ 227 (246)
+.+.|+++ |+..+.... .+...++.++... +..++...++.++||.+.+|........+|++... +.++
T Consensus 285 l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~-----~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~ 358 (401)
T PLN02409 285 TRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGI-----DSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQ 358 (401)
T ss_pred HHHHHHHc-CCeeccCChhhcccceEEEeCCCCC-----CHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHH
Confidence 99999887 666433211 2233455555332 34566667778999999998865347899999874 8899
Q ss_pred HHHHHHHHHHHHHHH
Q 042445 228 LENGLGRMKAFYDRH 242 (246)
Q Consensus 228 l~~~~~~l~~~~~~~ 242 (246)
+...+..|++++.+.
T Consensus 359 ~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 359 LLGALAGVEMVLKDV 373 (401)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999998764
No 203
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.74 E-value=3.2e-16 Score=134.00 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=132.9
Q ss_pred cCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccC-CcccEEEEcccccccccCCceEEEEEeeC
Q 042445 17 VFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFG-SIVPLLTLGSISKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 17 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r~G~i~~~~ 95 (246)
-++.|.+.+ +++|.++|++||+++|+||+|+.+.++..+-.....++ ..+..|+++||||++|+.| ||+++++
T Consensus 259 ~SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G---Gfi~gs~ 332 (476)
T PLN02955 259 FSMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG---GFIACSK 332 (476)
T ss_pred CCCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC---ceeecHH
Confidence 468888888 88889999999999999999998887754333333332 2356799999999998888 9999998
Q ss_pred CCCCcchhhHHHHHHHHh-hh-cCCC-CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc
Q 042445 96 PNGILQDSGIVDSIKIFL-NI-SSDP-ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS 172 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~-~~-~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 172 (246)
++++.++... .+ +++. ++....++.+++... ......++.++++.+++.+. . |+.. + .
T Consensus 333 --------~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~--~~~~~~r~~L~~n~~~fr~~---~-G~~~---~--s 393 (476)
T PLN02955 333 --------KWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVA--RKEKWRRKAIWERVKEFKAL---S-GVDI---S--S 393 (476)
T ss_pred --------HHHHHHHHhCCCCeecccccHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHh---c-CCCC---C--C
Confidence 8888888653 22 2233 333333444444421 11234667788888887763 2 4431 1 3
Q ss_pred eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 173 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
..+.+.+.... ....+.+.|.++||.+.+-.+... ...+|++++. ++++++.+++.|.+..+.
T Consensus 394 PI~pI~ig~~~------~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 394 PIISLVVGNQE------KALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred CEEEEEeCCHH------HHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhh
Confidence 33334354432 444557778899999987665543 4579999985 899999999999887654
No 204
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.74 E-value=2.1e-16 Score=136.01 Aligned_cols=200 Identities=16% Similarity=0.114 Sum_probs=131.9
Q ss_pred Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445 20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98 (246)
Q Consensus 20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~ 98 (246)
.|. +++.+++++|.++|++||+++|+||+++++...|..+ .....+-... +.++||.++..|+++|++++++
T Consensus 211 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-~~~~~~v~PD---i~t~~K~l~~~G~pigav~~~~--- 283 (425)
T PRK09264 211 GGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFF-SFERAGITPD---IVTLSKSISGYGLPMALVLIKP--- 283 (425)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHH-HHhhcCCCCC---EEEeccccCCCccceEEEEEch---
Confidence 454 5788999999999999999999999999876665432 1112221112 4467899877799999999997
Q ss_pred CcchhhHHHHHHH-HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCce
Q 042445 99 ILQDSGIVDSIKI-FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSM 173 (246)
Q Consensus 99 ~~~~~~~~~~l~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~ 173 (246)
++ ..+.. ....+++.|+++..++.+.+..... -....+..+++.+.+.+.|++ .|.+. ......|+
T Consensus 284 -----~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~--~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~-~~vrg~Gl 354 (425)
T PRK09264 284 -----EL-DVWKPGEHNGTFRGNNLAFVTATAALEEYWS--DDAFEKEVKAKGELVRERLEEIAAKYPGLG-AEVRGRGM 354 (425)
T ss_pred -----hh-hccCCCccCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhCCCce-ecceeccc
Confidence 65 33322 1223447788888877677742111 112333444444444444433 43321 12345688
Q ss_pred EEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445 174 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~ 243 (246)
++++.++... ....+...+.++||.+.++..+ .+.||++.. .+++++++++++|.+++++..
T Consensus 355 ~~~i~l~~~~------~~~~l~~~~~~~Gv~~~~~~~~--~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~ 418 (425)
T PRK09264 355 MQGIDFGDGE------LAGKIAAEAFENGLIIETSGPE--DEVVKLLPPLTIDEEELEEGLDILEEAVAEVL 418 (425)
T ss_pred EEEEEecChH------HHHHHHHHHHHCCCEEeccCCC--CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8898886432 3445566777899999885433 478888877 489999999999999987754
No 205
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.73 E-value=4.2e-16 Score=132.13 Aligned_cols=213 Identities=14% Similarity=0.053 Sum_probs=138.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC-CCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN-TPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~s 76 (246)
|.+++.++++ +++.++||||.+.+ +++|.++|+++|+++++|++|+.+..+- ...... .+....-..+..|
T Consensus 142 ~~l~~~i~~~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~-~~~~~~vd~~~~s 217 (371)
T PRK13520 142 KAVEDLIDDNTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNF-DFSLPGVDSITID 217 (371)
T ss_pred HHHHHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCc-cccCCCCceEEEC
Confidence 4566666543 55677899999987 8888999999999999999998765321 010000 1111111233446
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc---------CCCCchHHHHHHHHHhhchHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS---------SDPATFIQGAVPQILEKTEEEFFSKIIDILR 147 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 147 (246)
..|. ++++.++|+++..+. ++++.+....+.. .+.+.....++..++..-.+...++.++...
T Consensus 218 ~~K~-~~a~~~~G~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~ 289 (371)
T PRK13520 218 PHKM-GLAPIPAGGILFRDE-------SYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCM 289 (371)
T ss_pred Cccc-cCccCCceEEEEcCH-------HHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHH
Confidence 6785 777889999887652 5666654221111 0123455666666666433455677888889
Q ss_pred HHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--Ch
Q 042445 148 ETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EP 225 (246)
Q Consensus 148 ~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~ 225 (246)
++++.+.+.|+++ |+..+..|. ..++.+.++. ..+ +.+.|.++||.+.++. ..+++|+|+.. ++
T Consensus 290 ~~~~~l~~~L~~~-g~~~~~~~~-~~~v~~~~~~--------~~~-v~~~L~~~gi~v~~~~---~~~~iRis~~~~~t~ 355 (371)
T PRK13520 290 ENTRWLAEELKER-GFEPVIEPV-LNIVAFDDPN--------PDE-VREKLRERGWRVSVTR---CPEALRIVCMPHVTR 355 (371)
T ss_pred HHHHHHHHHHHhC-CCEEecCCC-ceEEEEecCC--------HHH-HHHHHHHCCceeccCC---CCCEEEEEEECCCCH
Confidence 9999999999887 665233444 3455555541 334 4555667899987743 25789999873 88
Q ss_pred HHHHHHHHHHHHHHH
Q 042445 226 SALENGLGRMKAFYD 240 (246)
Q Consensus 226 ~~l~~~~~~l~~~~~ 240 (246)
++++.+++.|++.++
T Consensus 356 edi~~~~~~l~~~~~ 370 (371)
T PRK13520 356 EHIENFLEDLKEVKK 370 (371)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
No 206
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.73 E-value=7.7e-16 Score=130.49 Aligned_cols=201 Identities=12% Similarity=0.021 Sum_probs=127.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++++||+|.+.+ +++|.++|+++|+++++||+|+...++.........++..+..+.+.||||.+|..| +.+
T Consensus 148 ~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G---~~v 221 (370)
T PRK05937 148 FVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMG---AAL 221 (370)
T ss_pred EEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCc---eEE
Confidence 56789999999998 888999999999999999999965544322111111221222367899999998888 445
Q ss_pred EeeCCCCCcchhhHHHHHHHH-hh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445 92 VTSDPNGILQDSGIVDSIKIF-LN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK 168 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~-~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 168 (246)
+..+ +....+... .. +..+.++....++..+++.. .+..+..++++++.++.+.+.|+...
T Consensus 222 l~~~--------~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l-~~~~~~~~~~l~~l~~~l~~~l~~~~------- 285 (370)
T PRK05937 222 LSSS--------EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFL-SQEGELARKQLFRLKEYFAQKFSSAA------- 285 (370)
T ss_pred EcCH--------HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHhcCCCC-------
Confidence 5555 655555432 11 22245666666555555421 11123445666777777777665421
Q ss_pred CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445 169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~ 244 (246)
+ +....+.++.. ..+.+.+.|.++||.+.... +...+++|+|++. ++++++.+++.|.+.+++..+
T Consensus 286 ~--~~~~~i~~~~~-------~~~~~~~~L~~~gi~v~~~~-~~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~ 353 (370)
T PRK05937 286 P--GCVQPIFLPGI-------SEQELYSKLVETGIRVGVVC-FPTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK 353 (370)
T ss_pred C--CCEEEEEeCCh-------hHHHHHHHHHHCCeeEEeeC-CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 1 11111234322 33556777888999886422 2235789999994 899999999999999877643
No 207
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.73 E-value=4.1e-16 Score=126.86 Aligned_cols=204 Identities=14% Similarity=0.135 Sum_probs=156.2
Q ss_pred cCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc-EEEEcccccccccCCceEEEEEeeC
Q 042445 17 VFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 17 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~g~r~G~i~~~~ 95 (246)
+.-+|.+-| +++|++++++||++.++||+++-..|+..+...-...+--.+ -|+-|+++|.||+-| |||.++.
T Consensus 313 hSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~ 386 (570)
T KOG1360|consen 313 HSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG---GYIAATR 386 (570)
T ss_pred eccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc---ceehhhh
Confidence 367888877 899999999999999999999988887654322222111112 388999999999999 9999999
Q ss_pred CCCCcchhhHHHHHHHHhh---hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc
Q 042445 96 PNGILQDSGIVDSIKIFLN---ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS 172 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 172 (246)
++++.++.+.. ++++.+|.....+.++++.-.-+.-...|+..+++.+++++.|.++ |+. +.|...
T Consensus 387 --------~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~-GiP--Vi~~pS 455 (570)
T KOG1360|consen 387 --------KLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL-GIP--VIPNPS 455 (570)
T ss_pred --------hHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc-CCc--ccCCCc
Confidence 99999999844 3546777777777666663333445667778889999999999987 664 366777
Q ss_pred eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 173 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
..+-+++.+..+ +.+....++.+++|+|..-.+... ...+|++.+. +++.++..++.+.....++
T Consensus 456 HIiPv~vgda~l-----~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 456 HIIPVRVGDAAL-----AKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred ceeeeeccCHHH-----HHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 888887876543 677888899999999988665543 6788888774 8888888888888877654
No 208
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.72 E-value=1.3e-15 Score=129.34 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=99.8
Q ss_pred hhhhhhhcc-c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITR-E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~-~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
+.+++.+++ + ++++|+||||.+++ +++|+++|+++|+++|+|++|+...... ++ .. +..+++.|
T Consensus 127 ~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~----~l-~~---GaDivv~S 195 (385)
T PRK08574 127 EDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLLYR----PL-RH---GADFVVHS 195 (385)
T ss_pred HHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccCC----hh-hh---CCcEEEee
Confidence 455666655 3 88899999999998 7789999999999999999997433211 11 11 23489999
Q ss_pred cccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC 154 (246)
Q Consensus 77 ~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (246)
++|.++++|-.+ |++++.+. ++.++++.... .+..++++..+.+.+.++. +..+.++..+++..+.
T Consensus 196 ~sK~l~g~~d~~gG~vi~~~~-------~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t-----L~~R~~~~~~na~~la 263 (385)
T PRK08574 196 LTKYIAGHNDVVGGVAVAWSG-------EFLEELWEWRRRLGTIMQPFEAYLVLRGLKT-----LEVRFERQCRNAMAIA 263 (385)
T ss_pred CceeecCCCCceeEEEEECcH-------HHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-----HHHHHHHHHHHHHHHH
Confidence 999998877654 66666543 77777776644 3445677666555555553 5556666677888889
Q ss_pred HHhhcCCCCccc
Q 042445 155 DRLKEIPCITCP 166 (246)
Q Consensus 155 ~~L~~~~~~~~~ 166 (246)
+.|+++|.+..+
T Consensus 264 ~~L~~~p~v~~V 275 (385)
T PRK08574 264 EFLSEHPKVAEV 275 (385)
T ss_pred HHHHcCCCcCEE
Confidence 999887766533
No 209
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.71 E-value=7.9e-16 Score=132.52 Aligned_cols=205 Identities=15% Similarity=0.121 Sum_probs=134.4
Q ss_pred cccCC--cCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceE
Q 042445 12 FSDFQ--VFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRL 88 (246)
Q Consensus 12 ~~~~p--~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~ 88 (246)
++.-| ++..|... +.+++++|.++|++||+++|+||++.++...|..+ .....+-. ..+.++||.++.+++++
T Consensus 203 vi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~-a~~~~~v~---pDi~~~~K~l~gG~~p~ 278 (423)
T PRK05964 203 FIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLF-ACEQAGVS---PDIMCLSKGLTGGYLPL 278 (423)
T ss_pred EEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh-HHHhcCCC---CCeeeeehhhhcCcccc
Confidence 44444 35567655 88999999999999999999999999886665332 11222211 22457889986666899
Q ss_pred EEEEeeCCCCCcchhhHHHHHHHH-------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc--
Q 042445 89 GWLVTSDPNGILQDSGIVDSIKIF-------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE-- 159 (246)
Q Consensus 89 G~i~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-- 159 (246)
|++++++ ++.+.+... ...+++.|+++..++.+.++.... +...+..++.-+.+.+.|++
T Consensus 279 ~av~~~~--------~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~---~~~~~~~~~~g~~l~~~l~~l~ 347 (423)
T PRK05964 279 AATLCTA--------EIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED---EPVLERVAALSAGLAEGLEPFR 347 (423)
T ss_pred eEEEEcH--------HHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHhhc
Confidence 9999988 888877531 223346799999998888873221 12333444444555555544
Q ss_pred -CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHH
Q 042445 160 -IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMK 236 (246)
Q Consensus 160 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~ 236 (246)
.+.+.. +. .-|.++.+.+..... ......+...+.++||.+.+. .+.+|++.. .++++++++++.+.
T Consensus 348 ~~~~i~~-vr-g~Gl~~~i~l~~~~~---~~~~~~l~~~l~~~Gv~v~~~-----~~~lR~~p~l~~t~edId~~v~~l~ 417 (423)
T PRK05964 348 DLPGVAD-VR-VLGAIGAVELDRPVL---ERDGPALRAFALERGVLLRPL-----GNTIYLMPPYIITAEELDRITDAIV 417 (423)
T ss_pred cCCCeEE-ee-cccEEEEEEeccCcc---hhHHHHHHHHHHHCCeEEEec-----CCEEEEeCCcccCHHHHHHHHHHHH
Confidence 333321 12 235666666653210 002345566677899999873 257999987 49999999999999
Q ss_pred HHHHH
Q 042445 237 AFYDR 241 (246)
Q Consensus 237 ~~~~~ 241 (246)
+++++
T Consensus 418 ~al~~ 422 (423)
T PRK05964 418 EVADE 422 (423)
T ss_pred HHHhh
Confidence 99875
No 210
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.71 E-value=5.2e-16 Score=133.67 Aligned_cols=207 Identities=15% Similarity=0.137 Sum_probs=135.6
Q ss_pred CCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEe
Q 042445 15 FQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVT 93 (246)
Q Consensus 15 ~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~ 93 (246)
.|+| +|.+.+ .+++++|.++|++||+++|+||+|.++.+ +... ....++-. .-+.++||.++ .|+++|++++
T Consensus 206 v~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~-g~~~-~~~~~~~~---pDi~~~gK~l~-~G~p~ga~~~ 278 (426)
T PRK00062 206 VAGN-MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRV-ALGG-AQGYYGVT---PDLTTLGKIIG-GGLPVGAFGG 278 (426)
T ss_pred CcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcccc-CCcc-HHHHhCCC---cchHhhhhHhh-CCCcceeeeE
Confidence 3434 677775 78899999999999999999999998843 3222 11222211 11578999986 7899999999
Q ss_pred eCCCCCcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445 94 SDPNGILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKK 168 (246)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 168 (246)
++ ++++.+... ...+++.+++.++++.+.|+... ++..++.++.....++.+.+.+++++ +..-+.
T Consensus 279 ~~--------~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vr 349 (426)
T PRK00062 279 RR--------EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAG-IPLTVN 349 (426)
T ss_pred HH--------HHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcC-CceEEE
Confidence 88 888888532 22344789999999999888533 23555555555555555555545553 321133
Q ss_pred CCCceEEEEEeccccccCC-----CC--hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLLEGI-----NS--DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~-----~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
+.|.++ -+.+......+. .+ ....+...+.++||.+.|.. .+.+++++..++++++++++.|.+++++
T Consensus 350 g~G~~~-~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~----~~~~~~~~~~t~~ei~~~~~~l~~~l~~ 424 (426)
T PRK00062 350 RVGSMF-GLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQ----FEAGFVSAAHTDEDIEKTLEAARKAFAA 424 (426)
T ss_pred EecceE-EEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCC----cCceeeeccCCHHHHHHHHHHHHHHHHh
Confidence 444444 444543210000 01 12345666778999998743 2456788777999999999999999876
Q ss_pred H
Q 042445 242 H 242 (246)
Q Consensus 242 ~ 242 (246)
+
T Consensus 425 ~ 425 (426)
T PRK00062 425 L 425 (426)
T ss_pred h
Confidence 4
No 211
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.71 E-value=2.4e-15 Score=128.06 Aligned_cols=207 Identities=14% Similarity=0.124 Sum_probs=130.1
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+.+ +++|.++|+++|+++|+|++|..+.... ++ .+ +..+++.|+
T Consensus 129 ~~l~~~l~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~----~~-~~---g~Divv~S~ 197 (390)
T PRK08064 129 EEVAQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQK----PL-DL---GADVVLHSA 197 (390)
T ss_pred HHHHHhcCCCceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccccC----ch-hh---CCcEEEeec
Confidence 3455556544 88999999999976 7888999999999999999998654221 11 12 234889999
Q ss_pred ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhhhc-CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS-SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.++++ |...|++++.+. ++++.++.....+ ...++.....+.+-+ +.+..+.+...+++..+.+
T Consensus 198 tK~~~G~~~~laG~~v~~~~-------~~~~~l~~~~~~~g~~~~~~~a~l~~~gl-----~tl~~R~~~~~~~a~~la~ 265 (390)
T PRK08064 198 TKFLAGHSDVLAGLAVVKDE-------ELAQKLYFLQNSFGAVLGVQDCWLVLRGL-----KTLHVRLEHSSETANKIAL 265 (390)
T ss_pred ceeccCCccceeEEEEeCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHccc-----CcHHHHHHHHHHHHHHHHH
Confidence 9998754 466788777653 7888887775543 233444444333222 2366777777888999999
Q ss_pred HhhcCCCCccccCC----------------CCceEEEEEeccccccCCCChHHHHHHHHHhcCe---EEecCC-------
Q 042445 156 RLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESV---IVLPGI------- 209 (246)
Q Consensus 156 ~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi---~v~pg~------- 209 (246)
.|+++|.+..+..| ..|-.+.+.++ +.+.+..++...++ .+.-|.
T Consensus 266 ~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~---------~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~ 336 (390)
T PRK08064 266 YLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ---------SEEAVRQFVSHVKLPVFAVSLGAVESILSY 336 (390)
T ss_pred HHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC---------CHHHHHHHHHhCCcceEcccCCCCcceeEC
Confidence 99887655433322 12334444453 22345566666676 444441
Q ss_pred -----CcCC-----------CCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445 210 -----TVGL-----------KDWLRITFAVEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 210 -----~f~~-----------~~~iRls~~~~~~~l~~~~~~l~~~~~~~ 242 (246)
++.. ++.+|+|++.++ .+..++.|.+++++.
T Consensus 337 ~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~--~~dli~dl~~Al~~~ 383 (390)
T PRK08064 337 PAKMSHAAMPKEERDERGITDGLLRLSVGLEN--VDDLIADFEQALSYV 383 (390)
T ss_pred CcccccccCCHHHHHhcCCCCCeEEEEeccCC--HHHHHHHHHHHHHhc
Confidence 1111 478999999732 234555555555543
No 212
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.70 E-value=3.4e-15 Score=126.54 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=106.4
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS 78 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 78 (246)
.+++.+.++ ++++|+||||.+ .++++|+++|+++|+++|+|++|+.... ..++ .++ --++++|.+
T Consensus 138 ~l~~~l~~~TklV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a~p~~----~~Pl-~~G---aDivv~S~t 206 (394)
T PRK09028 138 GIRELIRPNTKVLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWASPIN----SRPF-EMG---VDISIQAAT 206 (394)
T ss_pred HHHHhcCcCceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCcccccc----CCcc-ccC---ceEEEEeCC
Confidence 455556554 899999999877 5599999999999999999999985331 1122 122 339999999
Q ss_pred cccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 79 KRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 79 K~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
|.++++| +-.|+++.++ ++.+.++... ..+..++|.....+.+-|+. +.-+.++..+++..+.+.
T Consensus 207 K~l~Gh~d~~~G~~~~~~--------~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-----L~lR~~~~~~na~~la~~ 273 (394)
T PRK09028 207 KYIVGHSDVMLGTATANE--------KHWDQLREHSYLMGQCTSPDDVYLAMRGLRT-----LGVRLAQHEKNALKVANW 273 (394)
T ss_pred eEecCCCCEEEEEEECCH--------HHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-----HHHHHHHHHHHHHHHHHH
Confidence 9997764 6777766554 6667676543 34557788888888777774 777788889999999999
Q ss_pred hhcCCCCccccCC
Q 042445 157 LKEIPCITCPKKP 169 (246)
Q Consensus 157 L~~~~~~~~~~~~ 169 (246)
|++.|.+..+..|
T Consensus 274 L~~~p~v~~V~yP 286 (394)
T PRK09028 274 LATRPEVDHVRHP 286 (394)
T ss_pred HhcCCCccEEECC
Confidence 9998877655444
No 213
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.70 E-value=9.1e-16 Score=131.30 Aligned_cols=207 Identities=17% Similarity=0.173 Sum_probs=131.5
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ ++++| ||||.+. +.+++|.++|+++|+++|+|+++..+.... . .+..+..+++.|+
T Consensus 150 ~~l~~~i~~~t~~viv~~~-~~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~~----~---~~~~~~d~~~~s~ 219 (398)
T cd00613 150 EALKEEVSEEVAALMVQYP-NTLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGLK----P---PGEYGADIVVGNL 219 (398)
T ss_pred HHHHHhcCCCeEEEEEECC-CCCceec--chHHHHHHHHHhcCCEEEEEeccccccCCC----C---hHHcCCCEEEeec
Confidence 4455666554 67777 6999983 457999999999999999999876433111 0 1112345899999
Q ss_pred ccccccC----CceEEEEEeeCCCCCcchhhHHHHHHHH------------------------------hhhcCCCCchH
Q 042445 78 SKRGIVP----GLRLGWLVTSDPNGILQDSGIVDSIKIF------------------------------LNISSDPATFI 123 (246)
Q Consensus 78 sK~~~~~----g~r~G~i~~~~~~~~~~~~~~~~~l~~~------------------------------~~~~~~~~~~~ 123 (246)
+|.+ +| |+++||++.++ ++++.+... .....+.++..
T Consensus 220 ~K~~-~p~g~Ggp~~g~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~ 290 (398)
T cd00613 220 QKTG-VPHGGGGPGAGFFAVKK--------ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALL 290 (398)
T ss_pred cccC-CCCCCCCCceeEEEEhh--------hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHH
Confidence 9997 65 79999999987 666653110 00111222333
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE--EEEEeccccccCCCChHHHHHHHHHhc
Q 042445 124 QGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF--VMVKLNYSLLEGINSDMEFALKLAKEE 201 (246)
Q Consensus 124 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~ 201 (246)
..++...+....+..+++.++.++++++++.+.|+++++.. .+.+..+ ++++++... + .+.+.+...|.++
T Consensus 291 ~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~---~~~~~~~~~v~~~~~~~~--~--~~~~~~~~~L~~~ 363 (398)
T cd00613 291 ALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVL---PFNGPFFHEFVLRLPPLY--G--IRAEDLAKALIDG 363 (398)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCCCeeEEEEEEcCCcc--h--HHHHHHHHhhhhc
Confidence 33333333333356778888999999999999999875432 2333433 455554310 0 1334455566788
Q ss_pred CeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHH
Q 042445 202 SVIVLPGITVGLKDWLRITFAV--EPSALENGLGRM 235 (246)
Q Consensus 202 gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l 235 (246)
||.+.... ....+.+|+++.. ++++++++++.|
T Consensus 364 gi~~~~~~-~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 364 GFHAPTMY-LPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred Cccccccc-cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 98764321 1236889999984 889999888754
No 214
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.70 E-value=3.6e-15 Score=126.53 Aligned_cols=210 Identities=13% Similarity=0.047 Sum_probs=133.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC--C--CCCccccccCCcccEEE
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG--N--TPFVSMGVFGSIVPLLT 73 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~--~~~~~~~~~~~~~~~i~ 73 (246)
+.+++.++++ +...|+||||.+.+ +++|.++|+++|+++++|++|..+... + .....+. +....--.+
T Consensus 144 ~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d-~~~~~~d~~ 219 (373)
T TIGR03812 144 KDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD-FSLPGVQSI 219 (373)
T ss_pred HHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc-ccCCCCCEE
Confidence 3455555432 44557899999966 788889999999999999999865421 0 0000000 000001123
Q ss_pred EcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc---------CCCCchHHHHHHHHHhhchHHHHHHHHH
Q 042445 74 LGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS---------SDPATFIQGAVPQILEKTEEEFFSKIID 144 (246)
Q Consensus 74 ~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 144 (246)
..|..| |++++.+.|+++..++ ++++.+....+.. .+.+.....++..+++......+++..+
T Consensus 220 ~~s~~K-~~~~~~~~G~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~ 291 (373)
T TIGR03812 220 TIDPHK-MGLSPIPAGGILFRSK-------SYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVA 291 (373)
T ss_pred EECccc-cCCCcCCceEEEEeCH-------HHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHH
Confidence 346679 5777888887775442 6776664322111 1233455666666666433566778888
Q ss_pred HHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-
Q 042445 145 ILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV- 223 (246)
Q Consensus 145 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~- 223 (246)
+..++++.+.+.|++++ +..+..| ...++.++++. .. .+.+.|.++||.+.++. .++++|+++..
T Consensus 292 ~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~v~~~~~~--------~~-~v~~~L~~~gi~v~~~~---~~~~iRis~~~~ 357 (373)
T TIGR03812 292 ECMENTRYLVEELKKIG-FEPVIEP-VLNIVAFEVDD--------PE-EVRKKLRDRGWYVSVTR---CPKALRIVVMPH 357 (373)
T ss_pred HHHHHHHHHHHHHHhCC-CeEEcCC-CceEEEEEeCC--------HH-HHHHHHHHCCceeccCC---CCCEEEEEEECC
Confidence 99999999999999884 4323333 34566655542 23 45556778899987653 36799999984
Q ss_pred -ChHHHHHHHHHHHH
Q 042445 224 -EPSALENGLGRMKA 237 (246)
Q Consensus 224 -~~~~l~~~~~~l~~ 237 (246)
++++++..++.|++
T Consensus 358 ~t~edid~l~~~L~~ 372 (373)
T TIGR03812 358 VTREHIEEFLEDLKE 372 (373)
T ss_pred CCHHHHHHHHHHHhh
Confidence 88899999888864
No 215
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.69 E-value=6e-15 Score=127.01 Aligned_cols=215 Identities=13% Similarity=0.103 Sum_probs=135.5
Q ss_pred hhhhhhhcc---c--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCC-cccCCCCCccccccCCcccEEEEc
Q 042445 2 ELINQDITR---E--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGH-LAFGNTPFVSMGVFGSIVPLLTLG 75 (246)
Q Consensus 2 e~~~~~~~~---~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~~~~~~i~~~ 75 (246)
+.+++.++. + ++++++|| ... ++++|.++|+++|+++|+|++|.. +.+.+.....+. ...+++.
T Consensus 155 ~~l~~~i~~~~~k~v~~~~~~~~--~~~---~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-----~~di~~~ 224 (416)
T PRK00011 155 DEVEKLALEHKPKLIIAGASAYS--RPI---DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-----HADVVTT 224 (416)
T ss_pred HHHHHHHHhcCCCEEEECCCcCC--Ccc---CHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-----CCcEEEe
Confidence 345555542 2 44445444 333 489999999999999999999863 232221111221 1237799
Q ss_pred ccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCC--CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445 76 SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSD--PATFIQGAVPQILEKTEEEFFSKIIDILRETADKC 153 (246)
Q Consensus 76 s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (246)
|++|.+ +|.|.||++++++ ++.+.++.....+.. .....+.++..++......++++..++++++++.+
T Consensus 225 S~~K~l--~g~~gg~i~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l 295 (416)
T PRK00011 225 TTHKTL--RGPRGGLILTNDE-------ELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKAL 295 (416)
T ss_pred cCCcCC--CCCCceEEEeCCH-------HHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999975 6788899999743 788888766433221 12223333223332222345678888999999999
Q ss_pred HHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC-cC-----CCCeEEEEe------
Q 042445 154 CDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT-VG-----LKDWLRITF------ 221 (246)
Q Consensus 154 ~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~-f~-----~~~~iRls~------ 221 (246)
.+.|+++ |+........++++|+.++.... +.+.+.+.|+++||.+..+.. +. .++.+|++.
T Consensus 296 ~~~L~~~-g~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~ 369 (416)
T PRK00011 296 AEALAER-GFRVVSGGTDNHLVLVDLRSKGL-----TGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTR 369 (416)
T ss_pred HHHHHhC-CCeeeecCCCCeEEEEeCcccCC-----CHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhc
Confidence 9999987 66532112235888888753211 334466678899999975431 11 156799964
Q ss_pred ecChHHHHHHHHHHHHHHHH
Q 042445 222 AVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 222 ~~~~~~l~~~~~~l~~~~~~ 241 (246)
+.+++++++.++.|++++..
T Consensus 370 ~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 370 GFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred CcCHHHHHHHHHHHHHHHhc
Confidence 23688999999999888654
No 216
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.69 E-value=4.2e-15 Score=127.65 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=65.1
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+.+ +++|.++|+++|+++|+|++|+..... .++ ..+..+++.|+
T Consensus 133 ~~l~~~l~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~~----~~l----~~g~Divv~S~ 201 (418)
T TIGR01326 133 EEFEKAIDENTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYLC----RPI----DHGADIVVHSA 201 (418)
T ss_pred HHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhcC----Cch----hcCCeEEEECc
Confidence 4555556544 78899999999986 789999999999999999999743211 111 12356999999
Q ss_pred ccccccCCceEEEEEeeC
Q 042445 78 SKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~ 95 (246)
||.++++|+|+||++++.
T Consensus 202 sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 202 TKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred cccccCCccceEEEEEec
Confidence 999999999999999965
No 217
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.69 E-value=4e-15 Score=126.19 Aligned_cols=209 Identities=13% Similarity=0.105 Sum_probs=135.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+.+ +++|.++|+++|+++|+|++|..... ..++. ++ --++++|+
T Consensus 122 ~~le~~i~~~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~----~~~l~-~g---~Di~v~S~ 190 (378)
T TIGR01329 122 DKVKAALGPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLL----CNPLE-LG---ADIVYHSA 190 (378)
T ss_pred HHHHHhcCcCceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccccc----CChhh-cC---CcEEEEec
Confidence 4566666554 88999999999987 89999999999999999999864321 11221 22 23889999
Q ss_pred ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.++++ |++.|++++.+. .+.++++.... .+...++.....+..-++ .+..+.+...++...+.+
T Consensus 191 tK~l~G~~~~~~G~v~~~~~-------~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~-----tl~~R~e~~~~na~~la~ 258 (378)
T TIGR01329 191 TKFLAGHSDVMAGVLAVKGE-------EIAKKVYFLQNSTGSGLAPFDCWLLLRGIK-----TLAIRIEKQQENARAIAM 258 (378)
T ss_pred ceeccCCccceeEEEEeCcH-------HHHHHHHHHHHhcCCcCCHHHHHHHHccCC-----CHHHHHHHHHHHHHHHHH
Confidence 9988764 478999988652 66677776644 333556665554444443 366666777888888888
Q ss_pred HhhcCCCCccccCCC----------------CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC------
Q 042445 156 RLKEIPCITCPKKPE----------------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------ 213 (246)
Q Consensus 156 ~L~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------ 213 (246)
.|+++|.+..+..|. .|..+.+.+... +....+...|+..++.+.-|.....
T Consensus 259 ~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~------~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~ 332 (378)
T TIGR01329 259 FLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSV------ALSKRLVEATKLFSITVSFGSVNSLISMPCF 332 (378)
T ss_pred HHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCH------HHHHHHHHhCcCcccccCCCCCCceeeCCCc
Confidence 888776554332221 233444445211 2233445556777777777654320
Q ss_pred -----------------CCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 214 -----------------KDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 214 -----------------~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
++.||||++.++ .+..++.|.+++++
T Consensus 333 ~~~~~~~~~~~~~~gi~~~liR~svGlE~--~~dl~~dl~~al~~ 375 (378)
T TIGR01329 333 MSHASIPAEVREERGLPEDLVRLSVGIED--VDDLISDLDIAFVT 375 (378)
T ss_pred cccccCCHHHHHhcCCCCCeEEEEeccCC--HHHHHHHHHHHHHh
Confidence 478999999743 34455666666653
No 218
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.68 E-value=4.9e-15 Score=127.32 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=101.2
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+++ +++|.++|+++|+++|+|++|.... ...++ .....+++.|+
T Consensus 140 e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~~----~~~pl----~~gaDivv~S~ 208 (431)
T PRK08248 140 ENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASPY----LLRPI----EHGADIVVHSA 208 (431)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCccc----cCChh----HcCCCEEEEcC
Confidence 4455666544 77899999999998 6789999999999999999987311 11122 12344888999
Q ss_pred ccccccCCceEEEEEeeCCCCCc---------------------ch----hhH-HHHHHHH-hhhcCCCCchHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGIL---------------------QD----SGI-VDSIKIF-LNISSDPATFIQGAVPQI 130 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~---------------------~~----~~~-~~~l~~~-~~~~~~~~~~~q~~~~~~ 130 (246)
+|.++++|.++|++++....... .+ ... ....... ...+..++|...+.+.+-
T Consensus 209 tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rg 288 (431)
T PRK08248 209 TKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQG 288 (431)
T ss_pred ccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhcC
Confidence 99999999999998885421000 00 000 0111111 223446677777766666
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 131 LEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
|+. +..+.++..++...+.+.|+++|.+..+..|
T Consensus 289 l~t-----l~~R~~~~~~nA~~la~~L~~~p~v~~V~yP 322 (431)
T PRK08248 289 LET-----LHLRMERHSENALAVAKFLEEHEAVEWVSYP 322 (431)
T ss_pred cCc-----HHHHHHHHHHHHHHHHHHHHhCCCcceEECC
Confidence 653 6666777788999999999998877644433
No 219
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.68 E-value=4.7e-15 Score=127.28 Aligned_cols=150 Identities=16% Similarity=0.163 Sum_probs=102.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+++ +++|.++|+++|+++|+|++|+..... .++ ..+ --+++.|+
T Consensus 134 e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~----~p~-~~g---aDivv~S~ 202 (425)
T PRK06084 134 AALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVLC----RPF-EHG---ADIVVHSL 202 (425)
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC----Chh-hcC---CCEEEECc
Confidence 4556666554 88999999999998 799999999999999999999854321 111 112 23999999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhH----------------------------HHHHH-H-HhhhcCCCCchHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGI----------------------------VDSIK-I-FLNISSDPATFIQGAV 127 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~----------------------------~~~l~-~-~~~~~~~~~~~~q~~~ 127 (246)
+|.++++|.++|.+++.+...-.. .. ....+ . ....+..+++...+.+
T Consensus 203 tK~l~G~g~~~gG~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~ 280 (425)
T PRK06084 203 TKYIGGHGTSIGGIVVDSGKFPWA--EHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLI 280 (425)
T ss_pred hhcccccccceeEEEEeCCccchh--hccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 999999999999988864210000 00 00111 1 1234446788777777
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 128 PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 128 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
.+-|+. +..+.++..++...+.+.|+.+|.+..+..|
T Consensus 281 lrgl~t-----l~~R~~~~~~na~~la~~L~~~p~v~~V~yP 317 (425)
T PRK06084 281 LQGLET-----LALRMERHTENALKVARYLQQHPQVAWVKYA 317 (425)
T ss_pred HcCcCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 666664 6777777788999999999988876544333
No 220
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.68 E-value=7.3e-15 Score=125.24 Aligned_cols=207 Identities=12% Similarity=-0.001 Sum_probs=127.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++|+||||...+ +++|.++|+++|+++++|++|+....+ + ....+ +.-+++.|++|.+++ +.++||+
T Consensus 163 ~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~g~~~---~-~~~~~---g~D~~~~s~~K~l~~-~~~~G~l 231 (387)
T PRK09331 163 LLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTVGRMP---V-DGKKL---GADFIVGSGHKSMAA-SAPSGVL 231 (387)
T ss_pred EEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCcccCCcC---C-CHHHc---CCCEEEeeCcccccC-CCCEEEE
Confidence 88899999998766 899999999999999999999853321 1 11122 234789999999764 4589999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhh---------hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLN---------ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC 162 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 162 (246)
++++ ++++.+..... ++++.++....++...+.. ....++ ..+...++.+.+.+.|++++|
T Consensus 232 ~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~-~~~~~~-~~~~~~~~~~~l~~~L~~l~g 301 (387)
T PRK09331 232 ATTE--------EYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPH-VVERVK-RWDEEVKKARWFVDELEKIEG 301 (387)
T ss_pred EECH--------HHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 9988 88887755421 1112222233333333331 112232 334456777788999999888
Q ss_pred CccccC-CCCceEEEEEecccc--ccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHHHHHHHH
Q 042445 163 ITCPKK-PEGSMFVMVKLNYSL--LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGLGRMKAF 238 (246)
Q Consensus 163 ~~~~~~-~~~g~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~~~l~~~ 238 (246)
+..+.. ++...++.++.+... ..+.......+.+.|.++||...+.. ....+|+... .++++++++++.|++.
T Consensus 302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~---~~~i~ri~~~g~t~~di~~l~~aL~~i 378 (387)
T PRK09331 302 FKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKPG---ATKEFKLSTYGLTWEQVEYVADAFKEI 378 (387)
T ss_pred EEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEccC---CceEEEEEeccCCHHHHHHHHHHHHHH
Confidence 774321 333445544444110 00000112335566778899844322 1455666653 4899999999999988
Q ss_pred HHHH
Q 042445 239 YDRH 242 (246)
Q Consensus 239 ~~~~ 242 (246)
++++
T Consensus 379 ~~~~ 382 (387)
T PRK09331 379 AEKY 382 (387)
T ss_pred HHhc
Confidence 7764
No 221
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.68 E-value=3.3e-15 Score=123.31 Aligned_cols=214 Identities=16% Similarity=0.203 Sum_probs=148.3
Q ss_pred hhhhhhhccc---cccCC-cCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITRE---FSDFQ-VFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~---~~~~p-~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
|.+++++.+. ++.-| +--.|+.+ ++++++++.++|++||+++|.||++.++..+|+.+ .....+ -..-+-+
T Consensus 175 ~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~f-A~e~~g---V~PDI~t 250 (404)
T COG4992 175 EALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLF-AYEHYG---VEPDILT 250 (404)
T ss_pred HHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHH-HHHHhC---CCCCEEE
Confidence 4556666655 33222 24455544 55799999999999999999999999999888543 222222 2233566
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCC 154 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~ 154 (246)
+.|.+ ..|+++|.+++.+ ...+.+... +..+++.||++.+++.+.|+... +..+++. +++-+.+.
T Consensus 251 laK~L-gGG~PigA~la~~--------~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v----~~~g~~~~ 317 (404)
T COG4992 251 LAKAL-GGGFPIGAMLATE--------EIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENV----REKGEYLL 317 (404)
T ss_pred eeccc-cCCccceeeEEch--------hhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHH----HHHHHHHH
Confidence 78996 5669999999986 666655544 56777999999999999998543 2344443 34444455
Q ss_pred HHhhc----CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHH
Q 042445 155 DRLKE----IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSAL 228 (246)
Q Consensus 155 ~~L~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l 228 (246)
+.|++ .|-+.. .-.-|+++-+++.... ....+.+.+.++|+++.+.. ++.+||.... +++++
T Consensus 318 ~~L~~l~~~~~~v~~--vRG~GLmiGiel~~~~------~a~~~~~~~~~~gvL~~~a~----~~ViR~~PpL~i~~eei 385 (404)
T COG4992 318 QRLRELKRRYPLVKE--VRGRGLMIGIELKEPY------RARDIVRALREEGVLVLPAG----PNVIRFLPPLVITEEEI 385 (404)
T ss_pred HHHHHHhhcCCceee--eecceeEEEEEecCcc------cHHHHHHHHHHCCeEEecCC----CCeEEecCCccCCHHHH
Confidence 55544 431221 2234788888776532 23445667889999998866 6899999884 99999
Q ss_pred HHHHHHHHHHHHHHhh
Q 042445 229 ENGLGRMKAFYDRHAE 244 (246)
Q Consensus 229 ~~~~~~l~~~~~~~~~ 244 (246)
++++++|++++++...
T Consensus 386 ~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 386 DEALDALERALAAASA 401 (404)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999987654
No 222
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.68 E-value=4.3e-15 Score=126.18 Aligned_cols=211 Identities=15% Similarity=0.079 Sum_probs=133.9
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++||||||.+++ +++|.++|+++|+++|+|++++.....- . +....--+++.|.
T Consensus 128 ~~l~~~~~~~~~~v~~~~~~n~tG~~~~---~~~i~~l~~~~~~~livD~a~~~g~~~~----~---~~~~~~D~~~~s~ 197 (376)
T TIGR01977 128 ERIKRAIKTNTKLIVVSHASNVTGTILP---IEEIGELAQENGIFFILDAAQTAGVIPI----D---MTELAIDMLAFTG 197 (376)
T ss_pred HHHHHhcCCCCeEEEEECCCCCccccCC---HHHHHHHHHHcCCEEEEEhhhccCccCC----C---chhcCCCEEEecc
Confidence 3455555443 78899999999998 6778899999999999999998544221 1 1111223778889
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH----------------hhh-cCCCCchHHHHHHHHHhhchHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF----------------LNI-SSDPATFIQGAVPQILEKTEEEFFS 140 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~----------------~~~-~~~~~~~~q~~~~~~l~~~~~~~~~ 140 (246)
.|.+++|. ..|.++..+.. .+..+... ..+ .++.+.....++..+++...+.-.+
T Consensus 198 ~K~l~~p~-g~g~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~ 269 (376)
T TIGR01977 198 HKGLLGPQ-GTGGLYIREGI-------KLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIA 269 (376)
T ss_pred cccccCCC-CceEEEEcCCc-------CcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 99876543 35666665531 11111000 001 1234555555555566532233456
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhc-CeEEecCCCcC----
Q 042445 141 KIIDILRETADKCCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEE-SVIVLPGITVG---- 212 (246)
Q Consensus 141 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gi~v~pg~~f~---- 212 (246)
..+++.++..+.+.+.|++.+++..+.+.+ .+..+++.++.. +.+.+...|.++ ||.+.+|..|.
T Consensus 270 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~L~~~~gi~v~~g~~~~~~~~ 342 (376)
T TIGR01977 270 NIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-------DSEEVADILDEKFDIATRTGLHCAPLAH 342 (376)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-------CHHHHHHHHhccCCEEEEcccccchHHH
Confidence 677788888999999998877765332211 244555555421 334445556555 99999987664
Q ss_pred ------CCCeEEEEeec--ChHHHHHHHHHHHH
Q 042445 213 ------LKDWLRITFAV--EPSALENGLGRMKA 237 (246)
Q Consensus 213 ------~~~~iRls~~~--~~~~l~~~~~~l~~ 237 (246)
..+.+|+++.. ++++++.+++.|++
T Consensus 343 ~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 343 KTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 25799999985 88999999998864
No 223
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.67 E-value=4.7e-15 Score=125.49 Aligned_cols=203 Identities=18% Similarity=0.113 Sum_probs=139.0
Q ss_pred cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445 22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ 101 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~ 101 (246)
.+.|++.++++.++|++||+++|+||++.++..+|+ +..+...+- ..-+-++||.++. |+.+|.++...
T Consensus 238 ~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~-~fa~E~~gv---~PDivt~aK~ig~-G~Pl~avv~r~------ 306 (447)
T COG0160 238 IVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK-MFAFEHFGV---EPDIVTLAKSLGG-GLPLSAVVGRA------ 306 (447)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-chhhhhcCC---CCCEEEecccccC-CCceeEEeccH------
Confidence 356778999999999999999999999999998884 334444432 2335567899766 99999999998
Q ss_pred hhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHH-HHHHHHHHHhhcCCCCccccCCC-CceEEEEEe
Q 042445 102 DSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILR-ETADKCCDRLKEIPCITCPKKPE-GSMFVMVKL 179 (246)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~~-~g~~~~~~~ 179 (246)
++.+........+++.||++.+++.+.|+...++.+.+...... ..++.|.+.-++.|-+. ... -|+++-+++
T Consensus 307 --ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~~Ig---dVRG~Glm~giE~ 381 (447)
T COG0160 307 --EIMDWPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIG---DVRGLGLMIGVEL 381 (447)
T ss_pred --HhcccCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcCcee---cccccceEEEEEE
Confidence 88884444455567999999999999998544332222222222 22222222223344222 333 378888888
Q ss_pred ccccc--cCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 180 NYSLL--EGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 180 ~~~~~--~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
....- +...+..+.+...+.++|+.+..+..+ .+.+||.... ++++++++++.|.+++++.
T Consensus 382 v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~--~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 382 VKDRDTKEPDAELAAKIVARAFERGLLLLTCGPH--GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCC--CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 64321 011123455666788999988765533 7899999774 9999999999999999764
No 224
>PRK05968 hypothetical protein; Provisional
Probab=99.67 E-value=1.2e-14 Score=123.80 Aligned_cols=195 Identities=16% Similarity=0.101 Sum_probs=129.6
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDP 96 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~ 96 (246)
||||.+++..++++|.++|+++|+++|+|++|....+.. + +. .+ ..+++.|++|.++++| .+.|++++++
T Consensus 155 ~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~-p---~~-~g---~Divv~S~tK~l~g~~~~~gG~i~~~~- 225 (389)
T PRK05968 155 SPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR-P---IT-LG---VDLVIHSASKYLGGHSDTVAGVVAGSK- 225 (389)
T ss_pred CCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC-c---hh-cC---CcEEEeeccccccCCCCeEEEEEEECH-
Confidence 566667777899999999999999999999998655332 1 11 12 1378889999998865 5789888777
Q ss_pred CCCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC----
Q 042445 97 NGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE---- 170 (246)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---- 170 (246)
+++++++.... .+..++++....+...|+. +..+.++..++.+.+.+.|+++|++..+..|.
T Consensus 226 -------~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t-----l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~ 293 (389)
T PRK05968 226 -------EHIARINAEAYPYLGAKLSPFEAWLLLRGLRT-----LPLRMKAHEASALEIARRLKAHPVVERVCHPALANH 293 (389)
T ss_pred -------HHHHHHHHHHHHhCCCCCChHHHHHHHcccCc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCC
Confidence 88888876532 3336777777777666663 45666666778888999999988886544441
Q ss_pred -------CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC----------------------C-CCeEEEE
Q 042445 171 -------GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----------------------L-KDWLRIT 220 (246)
Q Consensus 171 -------~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----------------------~-~~~iRls 220 (246)
.|..+.++++... +...+...|+..++.+.-|..+. . ++.+|+|
T Consensus 294 ~~~~~~g~g~~~sf~~~~~~------~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~S 367 (389)
T PRK05968 294 PPAGLSGTSGLFSFIFREGI------DVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLH 367 (389)
T ss_pred hHHhCCCCceEEEEEECCHH------HHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEE
Confidence 1223444454221 33444555666666665554443 1 4789999
Q ss_pred eecChHHHHHHHHHHHHHHHH
Q 042445 221 FAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 221 ~~~~~~~l~~~~~~l~~~~~~ 241 (246)
++.++ .+..++-|.+++++
T Consensus 368 vGlE~--~~dl~~dl~~al~~ 386 (389)
T PRK05968 368 VGLEG--TEALWADLEQALAA 386 (389)
T ss_pred eccCC--HHHHHHHHHHHHHH
Confidence 99733 23455555555543
No 225
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.67 E-value=3.7e-15 Score=125.83 Aligned_cols=209 Identities=12% Similarity=0.064 Sum_probs=127.0
Q ss_pred hhhhhhhccc-----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITRE-----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~-----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
|.+++.++++ ++++|+||+|.+.+ +++|.++|++||+++|+|++|.. .......++ .-+++.|
T Consensus 139 ~~le~ai~~~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~------~~~~~~~~g---~D~~~~S 206 (363)
T TIGR01437 139 EQLEAAITEKTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE------DLQKYYRLG---ADLVIYS 206 (363)
T ss_pred HHHHHhcChhceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC------chHHHHHcC---CCEEEEe
Confidence 5567777765 35678899999888 67789999999999999999972 111111122 2367788
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hc--CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-IS--SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC 153 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (246)
++|.+ +|++.|++++++ ++++.++.... .. .........++..+++.. ..+..+..+.+.++++.+
T Consensus 207 ~~K~l--~gp~~G~l~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~-~~~~~~~~~~~~~~~~~l 275 (363)
T TIGR01437 207 GAKAI--EGPTSGLVLGKK--------KYIEWVKLQSKGIGRAMKVGKENILGLTAALEQY-LSTGKESGAEMVAKLTPF 275 (363)
T ss_pred CCccc--CCCceEEEEEcH--------HHHHHHHhccCCCcceeccCHHHHHHHHHHHHHH-HccCcccHHHHHHHHHHH
Confidence 99975 566899999876 77777643221 10 011112222333333311 112223333444567789
Q ss_pred HHHhhcCCCCccccCCCC-ce---EEEEEeccccccCCCChHHHHHHHHHhcC--eEEecCCCcCCCCeEEEEeec-ChH
Q 042445 154 CDRLKEIPCITCPKKPEG-SM---FVMVKLNYSLLEGINSDMEFALKLAKEES--VIVLPGITVGLKDWLRITFAV-EPS 226 (246)
Q Consensus 154 ~~~L~~~~~~~~~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~g--i~v~pg~~f~~~~~iRls~~~-~~~ 226 (246)
.+.|++++|+.....+.. +. ...+.++... .+. +...+.+.|++++ |.+++ ++...+.+|+++.. +++
T Consensus 276 ~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~-~g~--~~~~l~~~L~~~~~~I~~r~--~~~~~~~~~l~~~~~~~~ 350 (363)
T TIGR01437 276 IEALNTLKGVSASIVQDEAGRDIARAEIRFDESE-LGM--TAADVVQALRQGEPAIYTRG--YKANEGIIEIDPRSVTGG 350 (363)
T ss_pred HHHHhcCCCeEEEEecCCCCCcCceEEEEEeccC-CCC--CHHHHHHHHhcCCCCEEEee--eeecCCeEEEEeecCCHH
Confidence 999999888874322221 11 1223343210 011 4455566777777 55544 45568899999986 888
Q ss_pred HHHHHHHHHHHH
Q 042445 227 ALENGLGRMKAF 238 (246)
Q Consensus 227 ~l~~~~~~l~~~ 238 (246)
+++.++++|.+.
T Consensus 351 e~~~~~~~l~~~ 362 (363)
T TIGR01437 351 QLDIIVERIREI 362 (363)
T ss_pred HHHHHHHHHHHh
Confidence 899998888765
No 226
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.67 E-value=1.5e-14 Score=122.66 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=102.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++||||||.+.+ +++|.++|+++|+++|+|++|....+.. ++ .++ ..+++.|+
T Consensus 125 ~~l~~ai~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~~----p~-~~g---~Divv~S~ 193 (377)
T PRK07671 125 EEVEEAIRPNTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQS----PI-SLG---ADIVLHSA 193 (377)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccCC----hh-hhC---CeEEEecC
Confidence 4566666554 88899999998865 8888999999999999999998544331 11 112 24899999
Q ss_pred ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
||.+++++ .-.|++++.+. +++++++..+.. ....++...+.+.+-+. .+..+.+...++.+.+.+
T Consensus 194 sK~l~G~~~~~~G~~v~~~~-------~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~-----tl~~R~~~~~~na~~la~ 261 (377)
T PRK07671 194 TKYLGGHSDVVAGLVVVNSP-------ELAEDLHFVQNSTGGILGPQDSWLLLRGLK-----TLGIRMEEHETNSRAIAE 261 (377)
T ss_pred cccccCCccceeEEEEeCcH-------HHHHHHHHHHHhhcCCCCHHHHHHHHcCcC-----hHHHHHHHHHHHHHHHHH
Confidence 99998665 45577777553 777777766544 33456665555544443 366677777899999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|++.|++..+..|
T Consensus 262 ~L~~~~~v~~v~~p 275 (377)
T PRK07671 262 FLNNHPAVNKVYYP 275 (377)
T ss_pred HHHcCCCeeEEECC
Confidence 99987776544433
No 227
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.67 E-value=1.6e-14 Score=123.80 Aligned_cols=218 Identities=9% Similarity=0.010 Sum_probs=142.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s 76 (246)
|.+++.+++. +++..+|-++ ..+ +++|.++|+++|+++++|++|.....++..... ..... ..-++++|
T Consensus 210 d~l~~~~~~~~plvii~g~S~~~~-~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~--~~D~vtgT 283 (493)
T PRK13580 210 DEIAALAREFKPLILVAGYSAYPR-RVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVP--HADIVTTT 283 (493)
T ss_pred HHHHHHHhhcCCEEEEeCccccCC-CcC---HHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCC--CCcEEEeC
Confidence 4455555543 6666656644 545 889999999999999999999977766433210 00111 12388999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
++|.+.+| +.|++++++ ++++.+....++ .++..+...++++..+.........+.++++.++.+.+.+
T Consensus 284 ~hKaL~GP--~GG~I~~~~--------~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~ 353 (493)
T PRK13580 284 THKTLRGP--RGGLVLAKK--------EYADAVDKGCPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAE 353 (493)
T ss_pred ChhhccCC--CeEEEEecH--------HHHHHHhhCCCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 99987333 239999987 888888655432 2233333444444444422111225678899999999999
Q ss_pred HhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC------CCeEEEEeec------
Q 042445 156 RLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------KDWLRITFAV------ 223 (246)
Q Consensus 156 ~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------~~~iRls~~~------ 223 (246)
.|.+. |+..+........+++.+.... .+...+.+.|.+.||.+.+-..+.. +..||++...
T Consensus 354 ~L~~~-G~~vv~ggTdshIV~V~lg~~~-----~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~ 427 (493)
T PRK13580 354 GFLKR-GARLVTGGTDNHLVLIDVTSFG-----LTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGM 427 (493)
T ss_pred HHHhc-CCCccCCCCCCCEEEEEeCCHH-----HHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCC
Confidence 99887 6653222234577777775432 1344677789999999876433322 5689999774
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 042445 224 EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 224 ~~~~l~~~~~~l~~~~~~ 241 (246)
++++++++++.|.++++.
T Consensus 428 teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 428 GSDEMDEVAELIVKVLSN 445 (493)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 578999999999988864
No 228
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.67 E-value=9.6e-16 Score=128.66 Aligned_cols=189 Identities=15% Similarity=0.076 Sum_probs=122.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++|+||||.+.+ +++|.++|+++|+++++|++|..+.......... .....+-..+..|++|.+ +++.++|++
T Consensus 153 ~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~~~d~~~~s~~K~l-~~p~g~g~~ 227 (345)
T cd06450 153 VATAGTTDTGAIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL-DFGIERVDSISVDPHKYG-LVPLGCSAV 227 (345)
T ss_pred EEecccCCCCCCCC---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH-hcCccccCEEEEchhHhh-CCCcchHHH
Confidence 67899999999844 8999999999999999999999776532111111 001011224567899974 455666665
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
+. . .+.+.++..++. ...+++..++..+.++.+.+.|++++++..+..++.
T Consensus 228 ~~----------~----------------~~~~~~~l~~l~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 278 (345)
T cd06450 228 LV----------R----------------ALKLWATLRRFG---RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNL 278 (345)
T ss_pred HH----------H----------------HHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCce
Confidence 44 2 223333333343 345677778888899999999998887764444555
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSALENGLGRMKA 237 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~l~~~~~~l~~ 237 (246)
+++ .++++...-.+. +...+.+.|.++|+.+.++..+..++++|+++.. +.++++++++.|.+
T Consensus 279 ~iv-~f~~~~~~~~~~--~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 279 SLV-CFRLKPSVKLDE--LNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred eEE-EEEECCcchhhH--HHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 544 444543100000 3334556677887666665555557899999983 77889999988865
No 229
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.7e-14 Score=121.38 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=150.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.++..+.++ .++.-+|.||++.+ +++|+++|+++|+++++|-+++.... ...+..++ .-++..|-
T Consensus 153 ~~~~~~i~~~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~----~idv~~l~---~Df~afsg 222 (405)
T COG0520 153 DALEKLITPKTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAAGHL----PIDVQELG---CDFLAFSG 222 (405)
T ss_pred HHHHHhcCCCceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECccccCcc----CCCchhcC---CCEEEEcc
Confidence 3455555554 77788999999988 99999999999999999999875331 11223333 33888899
Q ss_pred ccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHH----------------------hhh-cCCCCchHHHHHHHHHhh
Q 042445 78 SKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIF----------------------LNI-SSDPATFIQGAVPQILEK 133 (246)
Q Consensus 78 sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~----------------------~~~-~~~~~~~~q~~~~~~l~~ 133 (246)
-|.+.+| | +|.+.+.+ ++++.+... ..+ ...++.....++.++++.
T Consensus 223 HKwl~gP~G--iGvLy~r~--------~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~ 292 (405)
T COG0520 223 HKWLLGPTG--IGVLYVRK--------ELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDY 292 (405)
T ss_pred cccccCCCc--eEEEEEch--------HHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHH
Confidence 9944455 6 89999988 777776220 011 113444555555556654
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc
Q 042445 134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211 (246)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 211 (246)
..+.-+++..+..++..+++.+.|+++|++..+.++. .+-.+.+.++.. ....+...|.++||.++.|..|
T Consensus 293 ~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~-------~~~dv~~~L~~~gI~vr~g~~c 365 (405)
T COG0520 293 LLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI-------HPHDVATLLDEKGIAVRAGHHC 365 (405)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC-------CHHHHHHHHHhCCeEEEecccc
Confidence 3344577888888999999999999999988665553 344444445543 4566677888999999999888
Q ss_pred CC--------CCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445 212 GL--------KDWLRITFAV--EPSALENGLGRMKAFYD 240 (246)
Q Consensus 212 ~~--------~~~iRls~~~--~~~~l~~~~~~l~~~~~ 240 (246)
.. +..+|+|++. +.++++..++.|+++.+
T Consensus 366 a~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 366 AQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred ccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 64 5669999994 89999999999988764
No 230
>PRK05939 hypothetical protein; Provisional
Probab=99.66 E-value=9.7e-15 Score=124.37 Aligned_cols=152 Identities=14% Similarity=0.075 Sum_probs=100.5
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ ++++|+||||.+. ++++|.++|+++|+++|+|++|..... +.+. ..+..++++|+
T Consensus 122 e~l~~~l~~~tklV~vesp~NptG~v~---dl~~I~~la~~~gi~livD~t~a~~~~----~~~~----~~gaDivv~S~ 190 (397)
T PRK05939 122 QNVAAAIRPNTRMVFVETIANPGTQVA---DLAGIGALCRERGLLYVVDNTMTSPWL----FRPK----DVGASLVINSL 190 (397)
T ss_pred HHHHHhCCCCCeEEEEECCCCCCCCHH---hHHHHHHHHHHcCCEEEEECCcccccc----cCcc----ccCCEEEEecC
Confidence 4566666654 7889999999984 599999999999999999999864221 1111 11345899999
Q ss_pred ccccccCCceEEEEEeeCCC-C------Ccc-------hhhHHHHHHHH--hhhcCCCCchHHHHHHHHHhhchHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPN-G------ILQ-------DSGIVDSIKIF--LNISSDPATFIQGAVPQILEKTEEEFFSK 141 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~-~------~~~-------~~~~~~~l~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 141 (246)
||.+++.|.++|++++++.. . ... ....+..++.. ...+..++|.....+.+-++. +..
T Consensus 191 sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~t-----l~~ 265 (397)
T PRK05939 191 SKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIGAET-----LAL 265 (397)
T ss_pred eecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcCc-----HHH
Confidence 99999999999998885320 0 000 00001222221 223435677666666655553 556
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 142 IIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 142 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+.++..++...+.+.|+..|.+..+..|
T Consensus 266 R~~~~~~na~~la~~L~~~p~V~~V~yP 293 (397)
T PRK05939 266 RVDRSCSNALALAQFLEAHPKVARVYYP 293 (397)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 6666677999999999988766544444
No 231
>PRK06541 hypothetical protein; Provisional
Probab=99.66 E-value=2e-14 Score=124.56 Aligned_cols=215 Identities=11% Similarity=0.076 Sum_probs=142.9
Q ss_pred cccCC-cCCCccCCC-hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCc-eE
Q 042445 12 FSDFQ-VFHVGSGFS-GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGL-RL 88 (246)
Q Consensus 12 ~~~~p-~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~-r~ 88 (246)
++.-| .++.|.+.+ .+++++|.++|++||+++|.||++.++...+..+ ....++-...+ -++||.++ .|+ ++
T Consensus 225 vi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~-a~~~~gv~PDi---vt~gK~l~-~G~~pi 299 (460)
T PRK06541 225 VFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMF-GCERFGYVPDI---ITCAKGIT-SGYSPL 299 (460)
T ss_pred EEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhh-hhhhcCCCCCE---EEeccccc-CCccce
Confidence 55666 688898765 8999999999999999999999998886555433 22222222233 35899976 776 99
Q ss_pred EEEEeeCCCCCcchhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445 89 GWLVTSDPNGILQDSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCI 163 (246)
Q Consensus 89 G~i~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 163 (246)
|++++++ ++++.+... ...+++.||++.+++.+.++...+ +...+.++++.+.+.+.|+++...
T Consensus 300 gav~~~~--------~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~ 368 (460)
T PRK06541 300 GAMIASD--------RLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFER---EGLLDHVRDNEPAFRATLEKLLDL 368 (460)
T ss_pred eEEEEcH--------HHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999998 888877532 123557889998888888874221 134566677777777777664221
Q ss_pred cc--ccCCCCceEEEEEecccc--ccCCCCh------HHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHH
Q 042445 164 TC--PKKPEGSMFVMVKLNYSL--LEGINSD------MEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENG 231 (246)
Q Consensus 164 ~~--~~~~~~g~~~~~~~~~~~--~~~~~~~------~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~ 231 (246)
.. .+. .-|.++-+++.... .....+. ...+...+.++||.+.+.. ...+.+||+.. .++++++++
T Consensus 369 ~~v~~vr-g~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~--~g~~~lrl~Ppl~~t~~~id~~ 445 (460)
T PRK06541 369 PIVGDVR-GDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADD--RGDPVVQLAPPLISGQEEFDEI 445 (460)
T ss_pred CCeEEEE-ecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecC--CCCCEEEEECCCCCCHHHHHHH
Confidence 11 122 33556666664321 0000000 1234556778999998731 12478999988 499999999
Q ss_pred HHHHHHHHHHHhhc
Q 042445 232 LGRMKAFYDRHAEK 245 (246)
Q Consensus 232 ~~~l~~~~~~~~~~ 245 (246)
+++|.+++++...+
T Consensus 446 ~~~l~~~l~~~~~~ 459 (460)
T PRK06541 446 EQILRSVLTEAWAR 459 (460)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999876543
No 232
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.65 E-value=2.4e-14 Score=121.14 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=102.5
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ ++++|+||+|... ++++|+++|+++|+++|+|++|+...... ++ .+ +.-++++|+
T Consensus 126 e~l~~~i~~~tklV~lesp~Np~g~~~---dl~~I~~la~~~g~~livD~t~a~g~~~~----pl-~~---gaDivv~S~ 194 (377)
T TIGR01324 126 EDIATLIQPNTKVLFLEAPSSITFEIQ---DIPAIAKAARNPGIVIMIDNTWAAGLLFK----PL-EH---GVDISIQAG 194 (377)
T ss_pred HHHHHhcCCCceEEEEECCCCCCCcHH---HHHHHHHHHHHcCCEEEEECCCccccccC----cc-cc---CceEEEecC
Confidence 3455666554 8899999997774 59999999999999999999998654321 11 12 233899999
Q ss_pred ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.+++++ ...|++++++ +.++.++.. ...+...+|.....+.+.++ .+..+.++..++...+.+
T Consensus 195 tK~l~G~~d~~gG~v~~~~--------~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~-----tl~~R~~~~~~~a~~la~ 261 (377)
T TIGR01324 195 TKYLVGHSDIMIGTVVANA--------RTWDQLREHSYLMGQMVDADDAYTTLRGLR-----TLGVRLKQHQESSLAIAK 261 (377)
T ss_pred ceeccCCCCceEEEEEeCH--------HHHHHHHHHHHHhCCCCCHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHH
Confidence 99998654 7788888876 777777644 33344567766666655555 356667777888888999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|++.|.+..+..|
T Consensus 262 ~L~~~p~v~~v~yp 275 (377)
T TIGR01324 262 WLSEQPEVARVLHP 275 (377)
T ss_pred HHHhCCCcCEEECC
Confidence 99887766443333
No 233
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=99.65 E-value=6.7e-15 Score=116.29 Aligned_cols=207 Identities=16% Similarity=0.151 Sum_probs=154.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCC--ccccccCC-cccEEEEcccccccccCCceE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPF--VSMGVFGS-IVPLLTLGSISKRGIVPGLRL 88 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~ 88 (246)
.....|||||..+++|+|..|++..++.+...+.|-+|.+|..++... ..+..+.. ...++++.||+|-||+.+-|+
T Consensus 183 LhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRv 262 (410)
T KOG1412|consen 183 LHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERV 262 (410)
T ss_pred eeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccc
Confidence 344558999999999999999999999999999999999998775322 22222222 235899999999999999999
Q ss_pred EEEE--eeCCCCCcchhhHHHHHHH----H-hhhcCCCCchHHHHHHHHHhhch--HHH---HHHHHHHHHHHHHHHHHH
Q 042445 89 GWLV--TSDPNGILQDSGIVDSIKI----F-LNISSDPATFIQGAVPQILEKTE--EEF---FSKIIDILRETADKCCDR 156 (246)
Q Consensus 89 G~i~--~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~~~q~~~~~~l~~~~--~~~---~~~~~~~~~~~~~~l~~~ 156 (246)
|-+. ..++ ..+..+.. . +..+++++..+...+...|+.+. +.| ++.+..++++.|..+++.
T Consensus 263 Gnltvv~~n~-------a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~ 335 (410)
T KOG1412|consen 263 GNLTVVVNNP-------AVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDH 335 (410)
T ss_pred cceEEEecCh-------hHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9854 3332 44444433 2 33466788888888899998765 344 555666777888888888
Q ss_pred hhcC--CCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHH
Q 042445 157 LKEI--PCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLG 233 (246)
Q Consensus 157 L~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~ 233 (246)
|..+ ||-+....-+-|||.+--+ ....+..+..++.|++.+.. |++++- +...++...+
T Consensus 336 L~aL~TPGtWDHI~~QiGMFSyTGL----------tp~qV~~li~~h~vyLl~~G--------RInisGLN~~NveyVAk 397 (410)
T KOG1412|consen 336 LVALKTPGTWDHITQQIGMFSYTGL----------TPAQVDHLIENHKVYLLSDG--------RINISGLNMKNVEYVAK 397 (410)
T ss_pred HHhcCCCCcHHHHHhhccceeecCC----------CHHHHHHHHHhceEEEecCC--------cEeeeccccccHHHHHH
Confidence 8764 5655455667899998544 45667888889999999866 899985 8888888888
Q ss_pred HHHHHHHHHh
Q 042445 234 RMKAFYDRHA 243 (246)
Q Consensus 234 ~l~~~~~~~~ 243 (246)
.|.++++...
T Consensus 398 AIde~Vr~~~ 407 (410)
T KOG1412|consen 398 AIDETVRAIK 407 (410)
T ss_pred HHHHHHHhhc
Confidence 8888887654
No 234
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.65 E-value=4.4e-15 Score=128.95 Aligned_cols=208 Identities=14% Similarity=0.107 Sum_probs=130.9
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEE--ccccCCcccCCCCCccccccCCcccEEEEc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIA--NEVYGHLAFGNTPFVSMGVFGSIVPLLTLG 75 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~--De~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (246)
|.+++.++++ ++++| ||||.+.+ +++|.++|+++|+++++ |.+..++. . . ....+..+++.
T Consensus 195 ~~l~~~i~~~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~-~-----~---~~~~~~D~~~~ 261 (447)
T PRK00451 195 EALEAAVDDDTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGLL-K-----P---PGEYGADIVVG 261 (447)
T ss_pred HHHHHhcCCCeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhccC-C-----C---cccCCCCEEEE
Confidence 4556666554 78889 99999965 89999999999999988 43321111 0 0 11112223333
Q ss_pred ---ccccccccCCceEEEEEeeCCCCCcchhhHHHHH----------------------------HHHhh-hcCCCCchH
Q 042445 76 ---SISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSI----------------------------KIFLN-ISSDPATFI 123 (246)
Q Consensus 76 ---s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l----------------------------~~~~~-~~~~~~~~~ 123 (246)
+|||-+.++|+++||+++++ ++++.+ +.... .+.+.+...
T Consensus 262 s~~k~~~~~~~~Gpg~G~l~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (447)
T PRK00451 262 EGQPLGIPLSFGGPYLGFFATRK--------KLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQAL 333 (447)
T ss_pred CCCcCCCCCCCCCCCchHHHhhH--------HHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHH
Confidence 78888888899999999987 666663 11111 111222222
Q ss_pred H-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcC
Q 042445 124 Q-GAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEES 202 (246)
Q Consensus 124 q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 202 (246)
+ .++...+....+..+++.++.+.++++.+.+.|++++++.. . ++++|.++.+.... ++.++..+ |.++|
T Consensus 334 ~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~-~--~~~~~~~~~v~~~~-----~~~~~~~~-L~~~g 404 (447)
T PRK00451 334 NALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVEL-F--DGPFFNEFVVRLPK-----PAEEVNEA-LLEKG 404 (447)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEe-c--CCCeEEEEEEecCC-----CHHHHHHH-HHhcC
Confidence 3 33333344334567889999999999999999999877764 2 44555442232111 24555554 55666
Q ss_pred eEE-ecCCCcCC--CCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445 203 VIV-LPGITVGL--KDWLRITFA--VEPSALENGLGRMKAFY 239 (246)
Q Consensus 203 i~v-~pg~~f~~--~~~iRls~~--~~~~~l~~~~~~l~~~~ 239 (246)
|.+ .++..+.. .+++|+|+. .+++++++.++.|++.+
T Consensus 405 i~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 405 ILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred CCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 653 34444432 679999997 38888999888887654
No 235
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.64 E-value=3.4e-14 Score=122.70 Aligned_cols=200 Identities=19% Similarity=0.142 Sum_probs=131.9
Q ss_pred Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445 20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98 (246)
Q Consensus 20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~ 98 (246)
.|. ..+.+++++|.++|++||+++|.||++.++...+..+ ....++-...++ ++||.++ .|+++|++++++
T Consensus 234 ~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~-a~~~~gv~pDiv---t~~K~l~-~G~p~gav~~~~--- 305 (441)
T PRK05769 234 GGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMF-AIEHFGVEPDII---TLAKAIA-GGLPLGAVIGRA--- 305 (441)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccccee-hhhccCCCCCEE---EEccccc-CCcccEEEEEeh---
Confidence 355 4567899999999999999999999999876665433 222222222333 5899986 689999999988
Q ss_pred CcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCceE
Q 042445 99 ILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMF 174 (246)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~ 174 (246)
++.+.+......+++.++++++++.+.|+...+ ...+..+++-+.+.+.|++ .+.+.. ...-|.+
T Consensus 306 -----~i~~~~~~~~~~T~~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~~~~~~~--vrg~G~~ 374 (441)
T PRK05769 306 -----ELMFLPPGSHANTFGGNPVAAAAALATLEELEE----GLLENAQKLGEYLRKELKELKEKYEFIGD--VRGLGLM 374 (441)
T ss_pred -----hhhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCeee--eecceEE
Confidence 666543323334557799999999988874222 4455566666666666654 331211 1223666
Q ss_pred EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
+-+.+....-+........+...+.++||.+.+.. .+.+||+... ++++++++++++.+++++.
T Consensus 375 ~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 375 IGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG----KSAIRIIPPLIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred EEEEeccCCccccHHHHHHHHHHHHhCCcEEecCC----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 66666432100000123345556678999987643 4789999885 9999999999999998754
No 236
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.64 E-value=3.2e-14 Score=123.01 Aligned_cols=204 Identities=12% Similarity=0.103 Sum_probs=132.8
Q ss_pred CCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCC
Q 042445 18 FHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDP 96 (246)
Q Consensus 18 NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~ 96 (246)
...|.. ++++++++|.++|++||+++|.||++.++...|..+ ....++-... +-+++|.++ .|+++|++++++
T Consensus 218 g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~-a~~~~gv~pD---i~t~gK~l~-~G~p~gav~~~~- 291 (445)
T PRK08593 218 GDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS-SISHFNITPD---LMSFGKSLA-GGMPMSAIVGRK- 291 (445)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH-HHHhcCCCCC---Eeeeccccc-CCcccEEEEEcH-
Confidence 445665 788999999999999999999999999886665422 1122221112 447899975 679999999998
Q ss_pred CCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccCCCC
Q 042445 97 NGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPKKPEG 171 (246)
Q Consensus 97 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~ 171 (246)
++++.+... ...+++.+|++++++.+.|+...+. ...+..+++-+.+.+.|+ +.+.+.. +. .-
T Consensus 292 -------~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v~~-vr-G~ 359 (445)
T PRK08593 292 -------EIMESLEAPAHLFTTGANPVSCAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQWVSKYNFVGD-VR-GY 359 (445)
T ss_pred -------HHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCcEEE-Ee-cc
Confidence 888877532 2345688999999998888743322 223333444444444443 3443321 22 33
Q ss_pred ceEEEEEeccccccCCC--ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 172 SMFVMVKLNYSLLEGIN--SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
|.++.+.+......... .....+...+.++||.+.+.. .+.+|+++.. ++++++++++.+.+++++..
T Consensus 360 Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~----~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~ 431 (445)
T PRK08593 360 GLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVA----GNVLRFQPPLVITYEQLDTALNTIEQAFTALE 431 (445)
T ss_pred ceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccC----CCEEEEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence 55555666421100000 123345556778999987632 4789998884 99999999999999998764
No 237
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.64 E-value=1.7e-14 Score=122.99 Aligned_cols=202 Identities=12% Similarity=0.103 Sum_probs=131.4
Q ss_pred cccCCcC-CCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVF-HVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~N-PtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
++..|.+ ..|.. .+++++++|.++|++||+++|+||++.++...|..+. ...++-. .-+.++||.++. |+.+|
T Consensus 183 vi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a-~~~~gv~---PDi~t~gK~lg~-G~p~~ 257 (395)
T PRK03715 183 VMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFA-YELSGIE---PDIMTLGKGIGG-GVPLA 257 (395)
T ss_pred EEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhh-HhhcCCC---CceeeehhhhhC-CcceE
Confidence 4444544 44554 4689999999999999999999999998766664331 1122211 125678999764 69999
Q ss_pred EEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCccc
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PCITCP 166 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~ 166 (246)
.+++++ ++..........+++.+|+..+++.+.|+...+ ....+..+++.+.+.+.|+++ .++..
T Consensus 258 av~~~~--------~i~~~~~~~~~~T~~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~~- 325 (395)
T PRK03715 258 ALLAKA--------EVAVFEAGDQGGTYNGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEERGLEG- 325 (395)
T ss_pred EEEEcc--------ccccccCCCcCCCCCCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcCe-
Confidence 999987 654211112233447789998888888874221 234555666666666666542 13332
Q ss_pred cCCCCceEEEEEeccccccCCCChHHHHHHHHHhc---CeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEE---SVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
+. .-|..+-+.+... ....+...+.+. ||.+.+.. .+.+||++.. +++++++++++|.+++++
T Consensus 326 vr-G~Glm~~i~l~~~-------~~~~~~~~~~~~~~~Gi~~~~~~----~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~ 393 (395)
T PRK03715 326 ER-GEGLLRALLLGKD-------IGPQIVEKARDMQPDGLLLNAPR----PNLLRFMPALNVTTEEIDQMIAMLRSVLDK 393 (395)
T ss_pred EE-cceeEEEEEecCc-------hHHHHHHHHHhccCCCEEEeecC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 22 3366666666532 223344445555 99886532 4789999884 999999999999999876
Q ss_pred H
Q 042445 242 H 242 (246)
Q Consensus 242 ~ 242 (246)
+
T Consensus 394 ~ 394 (395)
T PRK03715 394 L 394 (395)
T ss_pred h
Confidence 4
No 238
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.63 E-value=2.4e-14 Score=122.73 Aligned_cols=212 Identities=13% Similarity=0.064 Sum_probs=135.2
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++++||||.+.+ +++|.++|+++|+++++|++++..... ..+... .--+++.|.
T Consensus 133 ~~l~~~l~~~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~g~~~----~~~~~~---~~D~~~~s~ 202 (402)
T TIGR02006 133 EELKAAIRDDTILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSVGKIP----INVNEL---KVDLMSISG 202 (402)
T ss_pred HHHHHhcCCCCEEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhcCCcc----cCcccc---CCCEEEEeh
Confidence 3455555443 78899999999987 788999999999999999998753321 111111 223677778
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-------hhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-------LNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRET 149 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-------~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 149 (246)
.|.+|.+| +|+++..+. ....+... ..+ ..+.+.....++..+++. ....++...++.++.
T Consensus 203 ~K~~gp~G--~G~l~~~~~--------~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l 271 (402)
T TIGR02006 203 HKIYGPKG--IGALYVRRK--------PRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI-AKEEMAQDTAHVLAL 271 (402)
T ss_pred hhhcCCCc--eEEEEEccC--------CCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 89876556 889888762 11111110 011 124455555566566653 234577778888999
Q ss_pred HHHHHHHhhcCCCCccccCCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC--------------
Q 042445 150 ADKCCDRLKEIPCITCPKKPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------- 213 (246)
Q Consensus 150 ~~~l~~~L~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------- 213 (246)
++.+.+.|++++++.....+. ....+.+.|+.. +..+. ...+ .++.+..|..|..
T Consensus 272 ~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~------~~~~~-~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~ 342 (402)
T TIGR02006 272 RDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYV------EGESL-IMAL--KDLAVSSGSACTSASLEPSYVLRALGI 342 (402)
T ss_pred HHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCc------CHHHH-HHhc--CCEEEechhhcCCCCCCccHHHHHcCC
Confidence 999999998887765321111 111112334321 12333 3333 5888888877642
Q ss_pred -----CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 214 -----KDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 214 -----~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
.+.+|+|++. ++++++++++.|.++++++.
T Consensus 343 ~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 343 NDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred ChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3789999995 89999999999999887653
No 239
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.63 E-value=3.7e-14 Score=120.29 Aligned_cols=141 Identities=14% Similarity=0.156 Sum_probs=94.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ ++.+|+||||.+.+ +++|.++|+++|+++|+|++|+...+.. + + .++ --+++.|+
T Consensus 125 e~l~~ai~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~-p---~-~~g---aDivv~S~ 193 (380)
T PRK06176 125 SQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQN-P---L-LLG---ADIVVHSG 193 (380)
T ss_pred HHHHHhcCcCceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccCC-c---c-ccC---CCEEEecC
Confidence 4455666554 77899999999987 7899999999999999999998654331 1 1 122 22889999
Q ss_pred ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.++++| .-.|++++.+. ++.++++..... +...++...+.+.+.+. -+..+.+...++...+.+
T Consensus 194 tK~l~g~~d~~gG~vv~~~~-------~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~-----tl~~R~~~~~~~a~~la~ 261 (380)
T PRK06176 194 TKYLGGHSDVVAGLVTTNNE-------ALAQEIAFFQNAIGGVLGPQDSWLLQRGIK-----TLGLRMEAHQKNALCVAE 261 (380)
T ss_pred ceeccCCccceeeEEEecHH-------HHHHHHHHHHHHhcCCCCHHHHHHHHhccC-----cHHHHHHHHHHHHHHHHH
Confidence 99998776 44566666442 666666655443 32456666555544443 244455555677788888
Q ss_pred HhhcCCCCcc
Q 042445 156 RLKEIPCITC 165 (246)
Q Consensus 156 ~L~~~~~~~~ 165 (246)
.|++.|.+..
T Consensus 262 ~L~~~p~v~~ 271 (380)
T PRK06176 262 FLEKHPKVEK 271 (380)
T ss_pred HHHhCCCeeE
Confidence 8887765543
No 240
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.63 E-value=2.8e-15 Score=126.35 Aligned_cols=202 Identities=12% Similarity=0.032 Sum_probs=129.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++++||||.+.+ +++|.++|+++|+++++|++++.....- .+. ..+--+++.|.
T Consensus 129 ~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~~~----~~~---~~~~D~~~~s~ 198 (353)
T TIGR03235 129 DELADAIRPDTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQVVGKITV----DLS---ADRIDLISCSG 198 (353)
T ss_pred HHHHHhCCCCCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhhcCCccc----ccc---ccCCCEEEeeh
Confidence 4455555543 67899999999988 7899999999999999999987543221 111 11223667788
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHH--HHHH-------hhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDS--IKIF-------LNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILR 147 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~--l~~~-------~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 147 (246)
.|.++.+| +|++++++ +.... +... ... ....+.....++..++.. .....++.+++++
T Consensus 199 ~K~~gp~g--~g~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~ 267 (353)
T TIGR03235 199 HKIYGPKG--IGALVIRK--------RGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEI-ARRNAQAWEVKLR 267 (353)
T ss_pred hhcCCCCc--eEEEEEcc--------CcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence 99876566 89998887 32211 1110 001 124455566666666663 2345677888899
Q ss_pred HHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC----CCeEEEEeec
Q 042445 148 ETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----KDWLRITFAV 223 (246)
Q Consensus 148 ~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----~~~iRls~~~ 223 (246)
++++.+.+.|++ +|+..+..+......++.+... +. +.+.+...|++ +|.+.+|..|.. +.++|.+++.
T Consensus 268 ~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~---~~--~~~~v~~~L~~-~i~v~~g~~~~~~~~~~~~~l~~~g~ 340 (353)
T TIGR03235 268 AMRNQLRDALQT-LGVKLNGDPAETIPHILNFSID---GV--NSEALIVNLRA-DAAVSTGSACSSSKYEPSHVLQAMGL 340 (353)
T ss_pred HHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeC---Cc--CHHHHHHHHhC-CeEEEchhhcCCCCCCCCHHHHHcCC
Confidence 999999999988 5776433333222222223211 11 44556666755 899999999865 3478888888
Q ss_pred ChHHHHHH
Q 042445 224 EPSALENG 231 (246)
Q Consensus 224 ~~~~l~~~ 231 (246)
+++++..+
T Consensus 341 ~~~~~~~~ 348 (353)
T TIGR03235 341 DTDRARGA 348 (353)
T ss_pred CHHHhCcc
Confidence 76655443
No 241
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.62 E-value=3.7e-14 Score=121.33 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=99.5
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++.+|+||++.+.+ +++|.++|+++|+++|+|++|..... ..++ ..+ --|+++|+
T Consensus 138 ~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~----~~pl-~~G---ADIvv~S~ 206 (432)
T PRK06702 138 DEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL----CQAF-EHG---ANIIVHST 206 (432)
T ss_pred HHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh----CChh-hcC---CCEEEEcc
Confidence 4567777765 88899999999988 99999999999999999999862111 1111 112 22999999
Q ss_pred cc-----ccccCCceE-----EEEEeeCCCCCcc-h--------------hhHHHHH--HHHhhhcCCCCchHHHHHHHH
Q 042445 78 SK-----RGIVPGLRL-----GWLVTSDPNGILQ-D--------------SGIVDSI--KIFLNISSDPATFIQGAVPQI 130 (246)
Q Consensus 78 sK-----~~~~~g~r~-----G~i~~~~~~~~~~-~--------------~~~~~~l--~~~~~~~~~~~~~~q~~~~~~ 130 (246)
|| ...++|+++ +|..+++. .+.. + ..++.+. .....++..++++....+.+.
T Consensus 207 TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rg 285 (432)
T PRK06702 207 TKYIDGHASSLGGIVIDGGNFDWTNGKYP-ELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIG 285 (432)
T ss_pred ccccCCCcceeceEEEeCCCccccccccc-ccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhc
Confidence 99 544555555 44443221 0000 0 0111111 223445668899999998888
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 131 LEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
|+. +..+.++..+++..+.+.|+++|.+..+..|
T Consensus 286 L~T-----l~lR~~r~~~Na~~la~~L~~~p~V~~V~yP 319 (432)
T PRK06702 286 LET-----LHLRMERHSENALAVAKWLADHERIEWVNYP 319 (432)
T ss_pred cCc-----HHHHHHHHHHHHHHHHHHHHhCCCcceEECC
Confidence 884 5556666679999999999988876544333
No 242
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.62 E-value=5.9e-14 Score=119.59 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=99.3
Q ss_pred hhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445 3 LINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS 78 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 78 (246)
.+++.++++ ++++|+||+| +..++++|.++|+++|+++|+|++|....+.. ++. .+ ..+++.|+|
T Consensus 142 ~l~~~i~~~tklV~le~p~Np~~---~~~di~~I~~ia~~~gi~livD~a~a~~~~~~----~l~-~G---aDi~v~S~t 210 (394)
T PRK07050 142 GIADLIQPNTRLIWLEAPGSVTM---EVPDVPAITAAARARGVVTAIDNTYSAGLAFK----PFE-HG---VDISVQALT 210 (394)
T ss_pred HHHHhcCCCCeEEEEECCCCCCc---cHhhHHHHHHHHHHcCCEEEEECCcccccccC----HHH-cC---CeEEEEECC
Confidence 455666554 8899999986 45679999999999999999999998644211 111 11 248899999
Q ss_pred ccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 79 KRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 79 K~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
|.+++ .+.+.|++++.+. ++.++++..+. .+.+.++.....+.+.+.. +..+.++..++...+.+.
T Consensus 211 K~~~g~~~~~gG~v~~~~~-------~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~t-----l~~Rl~~~~~~a~~la~~ 278 (394)
T PRK07050 211 KYQSGGSDVLMGATITADA-------ELHAKLKLARMRLGIGVSADDCSLVLRGLPS-----LQVRLAAHDRSALEVAEW 278 (394)
T ss_pred ceecCCCCeeEEEEEECCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHcCCCc-----HHHHHHHHHHHHHHHHHH
Confidence 99864 4467899888653 78888876654 3446777776666555553 444566667778888889
Q ss_pred hhcCCCCcc
Q 042445 157 LKEIPCITC 165 (246)
Q Consensus 157 L~~~~~~~~ 165 (246)
|++.|.+..
T Consensus 279 L~~~p~v~~ 287 (394)
T PRK07050 279 LKARPEIAT 287 (394)
T ss_pred HHhCCCccE
Confidence 988776553
No 243
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.60 E-value=1.9e-13 Score=115.82 Aligned_cols=144 Identities=13% Similarity=0.086 Sum_probs=102.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ ++++|+||++ ...++++|+++|+++|+++|+|++|....+. .++. ++ --+++.|.
T Consensus 140 e~l~~al~~~TklV~lesPsNP~l---~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~----~pl~-~G---aDivv~S~ 208 (395)
T PRK05967 140 AGIAKLMRPNTKVVHTEAPGSNTF---EMQDIPAIAEAAHRHGAIVMMDNTWATPLYF----RPLD-FG---VDISIHAA 208 (395)
T ss_pred HHHHHhcCcCceEEEEECCCCCCC---cHHHHHHHHHHHHHhCCEEEEECCccCceec----ChhH-cC---CCEEEEec
Confidence 3456666654 8899999975 4567999999999999999999999864322 1221 22 22999999
Q ss_pred cccccc-CCceEEEEEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIV-PGLRLGWLVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~-~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.+++ .+.-.|+++.++ +..++++... ..+..++|...+.+.+-++. +.-+.++..++...+.+
T Consensus 209 tKy~~Gh~d~~~G~v~~~~--------~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T-----l~lR~~~~~~na~~lA~ 275 (395)
T PRK05967 209 TKYPSGHSDILLGTVSANE--------KCWPQLLEAHGTLGLCAGPDDTYQILRGLRT-----MGIRLEHHRKSALEIAR 275 (395)
T ss_pred ccccCCCCCeeEEEEEcCH--------HHHHHHHHHHHHcCCCCCHHHHHHHHcCccc-----HHHHHHHHHHHHHHHHH
Confidence 999776 447777666655 6666666443 34446777777666666653 66677777889999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|+++|.+..+..|
T Consensus 276 ~L~~hp~v~~V~yP 289 (395)
T PRK05967 276 WLEGRPDVARVLHP 289 (395)
T ss_pred HHHhCCCCcEEECC
Confidence 99988877544444
No 244
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.60 E-value=2.6e-13 Score=116.83 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=99.3
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++|+||||.+++ +++|.++|+++|+++|+|++|+..... .++ .++ --+++.|+
T Consensus 139 ~~l~~ai~~~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~~----~pl-~~g---aDivv~S~ 207 (427)
T PRK05994 139 ASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLI----RPI-EHG---ADIVVHSL 207 (427)
T ss_pred HHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCccccccC----Ccc-ccC---CcEEEEcC
Confidence 3455666554 88899999999987 789999999999999999999843211 122 122 22889999
Q ss_pred ccccccCCceEEEEEeeCC-CCCcch----------hh-----HHH-----------HHHHHhhhcCCCCchHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDP-NGILQD----------SG-----IVD-----------SIKIFLNISSDPATFIQGAVPQI 130 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~-~~~~~~----------~~-----~~~-----------~l~~~~~~~~~~~~~~q~~~~~~ 130 (246)
+|.++.+|-.+|.+++... ..+... .. +.+ ..+.....+..++++..+.+.+-
T Consensus 208 tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~~ 287 (427)
T PRK05994 208 TKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILTG 287 (427)
T ss_pred ccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 9999988877887766421 000000 00 111 11122333445677666666555
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 131 LEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
|+. +..+.++.+++...+.+.|+.+|.+..+..|
T Consensus 288 l~t-----L~~r~~~~~~~a~~la~~L~~~p~v~~v~yP 321 (427)
T PRK05994 288 IET-----LPLRMQRHSDNALAVAEWLKGHPKVSWVNYA 321 (427)
T ss_pred ccc-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 553 6777777788899999999988876543333
No 245
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.60 E-value=8e-14 Score=121.87 Aligned_cols=201 Identities=15% Similarity=0.122 Sum_probs=131.9
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI 99 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~ 99 (246)
|. .++.+++++|.++|++||+++|.||++.++...|..+. ...++-. .-+.+++|.++...+.+|.+++++
T Consensus 274 G~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a-~e~~gv~---PDivtlgK~lggG~~PigAv~~~~---- 345 (504)
T PLN02760 274 GVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFG-CDKYNIK---PDLVSLAKALSSAYMPIGAVLVSP---- 345 (504)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhH-HHhcCCC---CcEEEecccccCCccccceEeecH----
Confidence 54 45678999999999999999999999998876664332 2222221 226778999754336899999998
Q ss_pred cchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccccC
Q 042445 100 LQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE---IPCITCPKK 168 (246)
Q Consensus 100 ~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~~~ 168 (246)
++.+.+... +..+++.||++.+++.+.|+...+. ...+..+++-+.+.+.|++ .+.+.. +.
T Consensus 346 ----~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~-vr 417 (504)
T PLN02760 346 ----EISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKER---NIPEHVNKIAPRFQDGIKAFSGSPIIGE-IR 417 (504)
T ss_pred ----HHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCeee-EE
Confidence 888877531 3345678999999999998843321 2334444444444444443 332221 12
Q ss_pred CCCceEEEEEeccccc--cCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLL--EGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~ 241 (246)
.-|.++-+.+..... +.... -...+...+.++||.+.+.. +.+||+.. .++++++++++++.+++++
T Consensus 418 -G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-----~~lrl~Ppl~it~eeid~~~~~l~~al~~ 491 (504)
T PLN02760 418 -GTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG-----DNIMMSPPLIITPEEVDELISIYGKALKA 491 (504)
T ss_pred -eCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 335666666743210 00000 13345566778999987632 56899966 5999999999999999887
Q ss_pred Hh
Q 042445 242 HA 243 (246)
Q Consensus 242 ~~ 243 (246)
.+
T Consensus 492 ~~ 493 (504)
T PLN02760 492 TE 493 (504)
T ss_pred HH
Confidence 64
No 246
>PLN02509 cystathionine beta-lyase
Probab=99.60 E-value=1.2e-13 Score=119.18 Aligned_cols=145 Identities=16% Similarity=0.096 Sum_probs=99.9
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.+.++ ++++|+||||.+ .++++|.++|+++|+++|+|++|....... ++ .++ -.+++.|+
T Consensus 208 e~l~~ai~~~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~----pl-~~g---aDivv~S~ 276 (464)
T PLN02509 208 DEVAAAIGPQTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPVLSR----PL-ELG---ADIVMHSA 276 (464)
T ss_pred HHHHHhCCcCCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccccccCC----hh-hcC---CcEEEecC
Confidence 4566666654 788999999986 569999999999999999999987544321 11 112 23889999
Q ss_pred ccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.++++| .-.|.+++.+. .+...++..... +...++...+.+.+.|+ .+..+.++.+++++.+.+
T Consensus 277 tK~l~G~gdv~gG~v~~~~~-------~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~-----tL~~R~~r~~~nA~~la~ 344 (464)
T PLN02509 277 TKFIAGHSDVMAGVLAVKGE-------KLAKEVYFLQNSEGSGLAPFDCWLCLRGIK-----TMALRIEKQQENARKIAM 344 (464)
T ss_pred cccccCCCccceeEEEeccH-------HHHHHHHHHHHhcCCCcCHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHH
Confidence 99988755 34566666552 445554433322 22456666555555444 477788888999999999
Q ss_pred HhhcCCCCccccCC
Q 042445 156 RLKEIPCITCPKKP 169 (246)
Q Consensus 156 ~L~~~~~~~~~~~~ 169 (246)
.|+++|.+..+..|
T Consensus 345 ~L~~~p~V~~V~yP 358 (464)
T PLN02509 345 YLSSHPRVKKVYYA 358 (464)
T ss_pred HHhcCCCccEEECC
Confidence 99988877654444
No 247
>PRK14012 cysteine desulfurase; Provisional
Probab=99.59 E-value=8.7e-14 Score=119.35 Aligned_cols=210 Identities=11% Similarity=0.080 Sum_probs=128.5
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++++||||.+.+ +++|.++|+++|+++|+|++++..... ..+...+ .-+++.|+
T Consensus 135 ~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~g~~~----~~~~~~~---~D~~~~s~ 204 (404)
T PRK14012 135 EKLEAAMRDDTILVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSVGKVP----IDLSKLK---VDLMSFSA 204 (404)
T ss_pred HHHHHhcCCCCEEEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhcCCcc----cCcccCC---CCEEEEeh
Confidence 4566666654 78899999999987 788999999999999999998753321 1112222 22666789
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-h------hh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-L------NI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRET 149 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~------~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 149 (246)
.|.+| |+ ++|++++++. ...++... . .+ ..+.+.....+..+++... .....+..++.++.
T Consensus 205 ~K~~g-p~-g~G~l~~~~~--------~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l 273 (404)
T PRK14012 205 HKIYG-PK-GIGALYVRRK--------PRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIA-KEEMATENERIRAL 273 (404)
T ss_pred hhccC-CC-ceEEEEEecC--------CCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 99764 43 5899988873 11111110 0 01 1122333333333444421 23455566777888
Q ss_pred HHHHHHHhhcCCCCccccC-C-C--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC------------
Q 042445 150 ADKCCDRLKEIPCITCPKK-P-E--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL------------ 213 (246)
Q Consensus 150 ~~~l~~~L~~~~~~~~~~~-~-~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~------------ 213 (246)
++.+.+.|++++++..... + . ..+++++.+.. ..+. ...+ +++.|..|..|..
T Consensus 274 ~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~l--~~~~i~~g~~~~~~~~~~~~~~~~~ 342 (404)
T PRK14012 274 RDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE--------GESL-IMAL--KDLAVSSGSACTSASLEPSYVLRAL 342 (404)
T ss_pred HHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC--------HHHH-HHhC--CCeEEEchhhhCCCCCCCCHHHHHc
Confidence 8888888888776653211 1 1 22344433321 2233 3334 3677777655432
Q ss_pred -------CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 214 -------KDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 214 -------~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
.+.||+++.. ++++++.+++.|+++++++.
T Consensus 343 ~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 343 GLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR 381 (404)
T ss_pred CCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3789999995 89999999999999887653
No 248
>PRK07678 aminotransferase; Validated
Probab=99.58 E-value=1.8e-13 Score=118.61 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=131.9
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445 23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD 102 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~ 102 (246)
.+++++++++.++|++||+++|.||++.+|...|..+ ....++-... +-+++|.++...+.+|.+++++
T Consensus 230 ~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-~~~~~gv~PD---ivt~gK~lggG~~Pi~av~~~~------- 298 (451)
T PRK07678 230 MPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAF-GFMNYGVKPD---IITMAKGITSAYLPLSATAVKK------- 298 (451)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhH-HHHhcCCCCC---EEEeecccccCCcceeEEEEcH-------
Confidence 4677899999999999999999999999987666432 2222332222 4467899765447999999998
Q ss_pred hhHHHHHHHH-------hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE
Q 042445 103 SGIVDSIKIF-------LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF 174 (246)
Q Consensus 103 ~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 174 (246)
++.+.+... +..+++.||++.+++.+.|+...+ ..+++.++.-...++.+.+.+++.+.+.. +. .-|.+
T Consensus 299 -~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~-vr-g~Gl~ 375 (451)
T PRK07678 299 -EIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGD-IR-GKGLL 375 (451)
T ss_pred -HHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE-EE-eeceE
Confidence 888877531 334668899999999999885332 22333333223333333333444443321 22 33555
Q ss_pred EEEEeccccc--cC-CCChHHHHHHHHHhcCeEEecCCC--cCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 175 VMVKLNYSLL--EG-INSDMEFALKLAKEESVIVLPGIT--VGLKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 175 ~~~~~~~~~~--~~-~~~~~~~~~~ll~~~gi~v~pg~~--f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
+-+.+..... .. .......+...+.++||.+.+... ....+.+||+... ++++++++++++.++++++
T Consensus 376 ~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 376 VGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred EEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 5566642110 00 001234456667789999976322 1225789999775 9999999999999999764
No 249
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.58 E-value=5.2e-13 Score=112.83 Aligned_cols=206 Identities=16% Similarity=0.174 Sum_probs=127.2
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcC-CEEEEccccCCcccCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLG-IMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~-~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
+.+++.+.++ ++-.|.||+..+.+ +++|+++|+++| +++++|++++..... .++. ++ --|++.|
T Consensus 131 ~~l~~~l~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~----~pL~-~G---aDivv~S 199 (386)
T PF01053_consen 131 EALEAALRPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQ----NPLE-LG---ADIVVHS 199 (386)
T ss_dssp HHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC-----GGG-GT----SEEEEE
T ss_pred HHHHhhccccceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceeee----ccCc-CC---ceEEEee
Confidence 4566666655 88899999987766 999999999998 999999999854322 1221 22 2289999
Q ss_pred cccccccCCceE-EEEEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRL-GWLVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC 154 (246)
Q Consensus 77 ~sK~~~~~g~r~-G~i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (246)
.+|.+++.+--+ |.+++++. +++.+.++... ..+..++|.....+.+-++. +.-+.++..++...+.
T Consensus 200 ~TKyl~Ghsdv~~G~vv~~~~------~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T-----l~~R~~~~~~nA~~lA 268 (386)
T PF01053_consen 200 ATKYLSGHSDVMGGAVVVNGS------SELYDRLREFRRLLGATLSPFDAWLLLRGLRT-----LPLRMERQNENAEALA 268 (386)
T ss_dssp TTTTTTTSSSE-EEEEEESSH------HHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT-----HHHHHHHHHHHHHHHH
T ss_pred ccccccCCcceeeEEEEECch------hhhhhhhcchhhhcCccchHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHH
Confidence 999998766554 55554431 16777776553 34446788888877777774 7777777899999999
Q ss_pred HHhhcCCCCccccCC----------------CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----
Q 042445 155 DRLKEIPCITCPKKP----------------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----- 213 (246)
Q Consensus 155 ~~L~~~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----- 213 (246)
+.|++.|.+..+..| .+|..+.++++.. .+.+.+++..-.+. ..|..++.
T Consensus 269 ~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~--------~~~~~~f~~~l~l~-~~~~SlGg~~SLi 339 (386)
T PF01053_consen 269 EFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGG--------EEAARRFLDALKLF-SIAPSLGGVESLI 339 (386)
T ss_dssp HHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSH--------HHHHHHHHHH-SSS-EESSS-SSSS-EE
T ss_pred HHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccc--------hhhhHhHHhhhhhH-hhhhhcCCccccc
Confidence 999998877654444 2334555666642 23444455444443 11222210
Q ss_pred ----------------------CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 214 ----------------------KDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 214 ----------------------~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
++.||+|++.++ .+.+++.|.++++
T Consensus 340 ~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGlEd--~~dLi~Dl~~AL~ 386 (386)
T PF01053_consen 340 SHPASTSHRSLSPEERAEAGISDGLIRLSVGLED--PDDLIADLEQALE 386 (386)
T ss_dssp EETTCTTTTTSCHHHHHHTTS-TTEEEEE--SS---HHHHHHHHHHHHH
T ss_pred ccccchhhccCChhhhhccCCCCCeeEEEeccCC--HHHHHHHHHHhcC
Confidence 478999999743 3455666666653
No 250
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.58 E-value=3.8e-13 Score=116.51 Aligned_cols=198 Identities=11% Similarity=0.063 Sum_probs=133.5
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG 98 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~ 98 (246)
|. ..|+++++++.++|++||+++|.||++.++...|..+ ....++-... +-+++|.++ .| +.+|.+++.+
T Consensus 245 G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~-a~e~~gv~PD---ivt~gK~lg-gG~~Pigav~~~~--- 316 (459)
T PRK11522 245 GVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMF-ACEHENVQPD---ILCLAKALG-GGVMPIGATIATE--- 316 (459)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhh-hhhccCCCCC---EEEechhhh-CCCccceeEEEcH---
Confidence 44 4577899999999999999999999998876555432 2222222222 337899965 56 6999999988
Q ss_pred CcchhhHHHHHHHH---hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCC-CccccCCC
Q 042445 99 ILQDSGIVDSIKIF---LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPC-ITCPKKPE 170 (246)
Q Consensus 99 ~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~-~~~~~~~~ 170 (246)
++.+.+... ...+++.||++.+++.+.|+...+. ...+..+++-+++.+.|++ .|+ +.. +. .
T Consensus 317 -----~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~-Vr-G 386 (459)
T PRK11522 317 -----EVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQ---NLPAQAEQKGDYLLDGFRQLAREYPDLVQE-AR-G 386 (459)
T ss_pred -----HHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHhCCCceee-EE-e
Confidence 877766421 2344577999999999988853322 2344455555556665554 332 221 12 3
Q ss_pred CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445 171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~ 244 (246)
-|.++.+.+.... ....+...+.++||.+.+.. ...+.+|+++.. +++++++++++|.+++++..+
T Consensus 387 ~Gl~~giel~~~~------~~~~i~~~l~~~Gvl~~~~~--~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 387 KGMLMAIEFVDNE------IGYNFASEMFRQRVLVAGTL--NNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred ceeEEEEEecCch------HHHHHHHHHHHCCeEEEecC--CCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4677777775431 33445566778999987642 125789999874 999999999999999987654
No 251
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.58 E-value=1.6e-13 Score=109.43 Aligned_cols=204 Identities=16% Similarity=0.143 Sum_probs=138.7
Q ss_pred CCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCC
Q 042445 18 FHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDP 96 (246)
Q Consensus 18 NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~ 96 (246)
--.|++ +++..+++..++|++||+++|.||+++++..+|+.. ....-+-...++. ++|++.+.=..+..+++++
T Consensus 218 GEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~l-a~d~env~PDivi---lgKalSGG~~Pvsavl~~~- 292 (427)
T KOG1402|consen 218 GEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLL-ACDYENVRPDIVI---LGKALSGGVYPVSAVLADD- 292 (427)
T ss_pred cccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEE-EeehhhcCCCeEE---EeccccCCeeeeEEEEecH-
Confidence 345554 455799999999999999999999999999887532 2221111123333 5599766668999999999
Q ss_pred CCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccccCCCCceE
Q 042445 97 NGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE-IPCITCPKKPEGSMF 174 (246)
Q Consensus 97 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~~ 174 (246)
+++..++.. +..+++.||++.+++.++|+-..++-+.++.+.+.+....-...|+. +|++...+. .-|++
T Consensus 293 -------~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VR-GrGl~ 364 (427)
T KOG1402|consen 293 -------DIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVR-GRGLL 364 (427)
T ss_pred -------HHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheee-ccceE
Confidence 888887765 66777999999999999998544555555555444433333333332 455443233 33777
Q ss_pred EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445 175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYD 240 (246)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~ 240 (246)
.-+.+......+ .+..+.+. .+++.|++.-|-. .+-|||+... ++++++++++.|.+.+.
T Consensus 365 ~ai~i~~~~~~~-~~aw~~cl-~lk~~g~LAkptH----~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 365 NAIVINPSKTSG-QDAWDVCL-ALKENGLLAKPTH----GNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred EEEEeccccccc-hhHHHHHH-cccccccccCCCC----CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 777776432111 13455544 5778898877633 6789999774 99999999999998874
No 252
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.57 E-value=2.9e-13 Score=116.37 Aligned_cols=152 Identities=13% Similarity=0.104 Sum_probs=101.1
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ ++.+|+||+|.+.+ +++|.++|+++|+++|+|+++..... ..++ .++ --+++.|+
T Consensus 146 e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~----~~pl-~~G---aDivv~S~ 214 (436)
T PRK07812 146 DAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL----IRPL-EHG---ADIVVHSA 214 (436)
T ss_pred HHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc----CCch-hcC---CCEEEEec
Confidence 3455556554 77899999999988 88899999999999999998874322 1122 122 22777999
Q ss_pred ccccccCCceEEEEEeeCCC-CC---------------c----c---hhhHHHHHH--HHhhhcCCCCchHHHHHHHHHh
Q 042445 78 SKRGIVPGLRLGWLVTSDPN-GI---------------L----Q---DSGIVDSIK--IFLNISSDPATFIQGAVPQILE 132 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~-~~---------------~----~---~~~~~~~l~--~~~~~~~~~~~~~q~~~~~~l~ 132 (246)
+|.+++.|--+|++++.... .. . . ...++.+++ .....+..++|...+.+.+-|+
T Consensus 215 tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~rgl~ 294 (436)
T PRK07812 215 TKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQGLE 294 (436)
T ss_pred ccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCcC
Confidence 99999998878887774310 00 0 0 001111222 1233455678877777666666
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 133 KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
. +..+.++..++...+.+.|+++|.+..+..|
T Consensus 295 t-----L~~R~~~~~~nA~~la~~L~~~p~v~~V~yP 326 (436)
T PRK07812 295 T-----LSLRIERHVANAQRVAEFLEARDEVASVNYA 326 (436)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 4 6777777789999999999998877544444
No 253
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.56 E-value=3.1e-13 Score=116.15 Aligned_cols=192 Identities=13% Similarity=0.135 Sum_probs=129.9
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG 98 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~ 98 (246)
|. .++++.+++|.++|++||+++|+||++.++...|..+. ...++-...++ +++|.++ .| +.+|.+++++
T Consensus 219 g~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa-~~~~gv~PDi~---t~gK~l~-gG~~p~~av~~~~--- 290 (428)
T PRK07986 219 GMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFA-CEHAGIAPDIL---CLGKALT-GGTMTLSATLTTR--- 290 (428)
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeee-ecccCCCCCEE---Eechhhh-CCcccCcchhchH---
Confidence 54 45679999999999999999999999988755554332 12222222233 5899974 56 6889999988
Q ss_pred CcchhhHHHHHHHH------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCccccCC
Q 042445 99 ILQDSGIVDSIKIF------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PCITCPKKP 169 (246)
Q Consensus 99 ~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~ 169 (246)
++.+.+... ...+++.||++.+++.+.|+.-.+. ...+..+++-+++.+.|+++ +.+.. +.
T Consensus 291 -----~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~-vR- 360 (428)
T PRK07986 291 -----EVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESG---DWQQQVAAIEAQLREELAPLRDAPMVAD-VR- 360 (428)
T ss_pred -----HHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEe-Ee-
Confidence 888887642 2345578999999999888743222 23444455555555555543 32221 11
Q ss_pred CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~ 241 (246)
.-|+++-+.+.... ....+...+.++||.+.+. .+.+||+.. .+++++++++++|.+++++
T Consensus 361 g~Gl~~~ve~~~~~------~~~~~~~~l~~~Gl~~~~~-----g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 361 VLGAIGVVETTRPV------NMAALQRFFVEQGVWIRPF-----GKLIYLMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred ccceEEEEEeCCcc------cHHHHHHHHHHCCcEEEec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 23666666665331 3445566778999999874 258999766 4999999999999999864
No 254
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.56 E-value=6.3e-13 Score=112.80 Aligned_cols=202 Identities=19% Similarity=0.250 Sum_probs=137.1
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ +++..+|-||+..+ +++|.++|+++|+++++|-+++....+ ..+..++ --+++.|.
T Consensus 130 ~~~~~~l~~~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~g~~~----id~~~~~---~D~~~~s~ 199 (371)
T PF00266_consen 130 EDLEEALNPDTRLVSISHVENSTGVRNP---IEEIAKLAHEYGALLVVDAAQSAGCVP----IDLDELG---ADFLVFSS 199 (371)
T ss_dssp HHHHHHHHTTESEEEEESBETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTTTTTSS------TTTTT---ESEEEEES
T ss_pred hhhhhhhccccceEEeecccccccEEee---eceehhhhhccCCceeEechhcccccc----ccccccc---cceeeecc
Confidence 3455666654 56666789999988 889999999999999999998854422 1122222 23788999
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh---------------------h-cCCCCchHHHHHHHHHhhch
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN---------------------I-SSDPATFIQGAVPQILEKTE 135 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~---------------------~-~~~~~~~~q~~~~~~l~~~~ 135 (246)
-|.+|.+| +|+++.++ +.+++++.... + ..+.+.....++..+++...
T Consensus 200 ~Kl~gp~G--~g~l~v~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~ 269 (371)
T PF00266_consen 200 HKLGGPPG--LGFLYVRP--------EAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLE 269 (371)
T ss_dssp TSTTSSST--EEEEEEEH--------HHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH
T ss_pred cccCCCCc--hhhheehh--------hhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhh
Confidence 99655566 79999998 78877743211 0 01345555566666666443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc---CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC
Q 042445 136 EEFFSKIIDILRETADKCCDRLKEIPCITCPK---KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG 212 (246)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~ 212 (246)
+.-+++.+++..+..+.+.+.|++++++..+. .+..+..+.+.++.. +.+.+...|.++||.+..|..+.
T Consensus 270 ~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~L~~~~I~~~~G~~~~ 342 (371)
T PF00266_consen 270 EIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-------DADDVVKYLEERGIAVSTGSACA 342 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-------SHHHHHHHHHHHTEEEEESTTTC
T ss_pred ccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-------CHHHHHHHHhhcCEEEeccCccc
Confidence 55678888888999999999999988766322 122344455556432 45666777878899999988776
Q ss_pred --------CCCeEEEEeec--ChHHHHH
Q 042445 213 --------LKDWLRITFAV--EPSALEN 230 (246)
Q Consensus 213 --------~~~~iRls~~~--~~~~l~~ 230 (246)
..+.+|+|+.. +.+++++
T Consensus 343 ~~~~~~~~~~~~iRvS~~~~nt~~dv~~ 370 (371)
T PF00266_consen 343 GPSLDILGMGGVIRVSLHYYNTEEDVDR 370 (371)
T ss_dssp HHHHHHHHTTTEEEEE-GTTSSHHHHHH
T ss_pred HHHHHHhCCCCEEEEeccCCCCHHHHhh
Confidence 25999999995 7788775
No 255
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.56 E-value=5e-13 Score=114.81 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=129.7
Q ss_pred CCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCC
Q 042445 19 HVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDP 96 (246)
Q Consensus 19 PtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~ 96 (246)
-.|. .++.+.+++|.++|++||+++|.||++.++...|..+ .....+-...++ +++|.+ ..| ..+|++++++
T Consensus 213 ~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~gv~PDi~---t~gK~l-~gG~~p~~av~~~~- 286 (422)
T PRK05630 213 AGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELF-ATLAAGVTPDIM---CVGKAL-TGGFMSFAATLCTD- 286 (422)
T ss_pred cCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhh-HHHhcCCCCCee---eeechh-hcCccccceeeccH-
Confidence 3455 4667899999999999999999999998886655432 222222222223 789996 346 5889999998
Q ss_pred CCCcchhhHHHHHHHH-------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccc
Q 042445 97 NGILQDSGIVDSIKIF-------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE---IPCITCP 166 (246)
Q Consensus 97 ~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~ 166 (246)
++.+.+... +..+++.||+..+++.+.|+.-.+. ...+.++++.+.+.+.|++ .+.+..
T Consensus 287 -------~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~~- 355 (422)
T PRK05630 287 -------KVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETG---MWRKQVKRIEAELIAGLSPLAHLPGVAD- 355 (422)
T ss_pred -------HHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHhhcCCCeee-
Confidence 888877531 2345578999999999988743322 1233444444555554543 333321
Q ss_pred cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
+. .-|+++-+++.... +...+...+.++||.+.+. .+.+||.... +++++++++++|.++++.
T Consensus 356 vR-g~Gl~~~ie~~~~~------~~~~~~~~~~~~Gl~~~~~-----g~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 356 VR-VLGAIGVVEMEQPV------DMEEATQAAVDHGVWLRPF-----GRLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred ee-ccccEEEEEECCcc------cHHHHHHHHHHCCeEEEec-----CCEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 12 23677777775321 2345566788899998763 2688998774 999999999999999864
No 256
>PRK06105 aminotransferase; Provisional
Probab=99.55 E-value=5.7e-13 Score=115.67 Aligned_cols=202 Identities=17% Similarity=0.131 Sum_probs=133.0
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI 99 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~ 99 (246)
|. .++++++++|.++|++||+++|.||++.++...|..+. ...++-... +.+++|.++...+.+|.+++++
T Consensus 232 G~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~-~~~~~v~PD---i~~~gK~lggG~~P~~av~~~~---- 303 (460)
T PRK06105 232 GVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFG-CETFGIKPD---ILVMSKQLSSSYQPLSAVLMNE---- 303 (460)
T ss_pred CCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhh-HHhcCCCCC---eeeeecccccCcccceEEEEcH----
Confidence 44 46889999999999999999999999998876664432 222222212 5578999765447899999998
Q ss_pred cchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh---cCCCCccccC
Q 042445 100 LQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK---EIPCITCPKK 168 (246)
Q Consensus 100 ~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~---~~~~~~~~~~ 168 (246)
++.+.+... +..+++.||++.+++.+.|+...+. ...+..++.-+.+.+.|+ +.+.+.. +.
T Consensus 304 ----~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~---~l~~~v~~~g~~l~~~L~~l~~~~~v~~-vr 375 (460)
T PRK06105 304 ----KVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEER---DLVGNAAERGARLQARLRALADHPLVGE-VR 375 (460)
T ss_pred ----HHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCCeEE-EE
Confidence 888877542 2345588999999998888753322 223333444444444443 3433321 22
Q ss_pred CCCceEEEEEeccccc--cCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLL--EGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
.-|++.-+++..... ..... ....+...+.++||.+.|. .+.+||+... ++++++++++++.+++++
T Consensus 376 -G~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~-----g~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 449 (460)
T PRK06105 376 -GVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM-----GDTLAFCPPLIITAAQVDEMVDRFGRALDD 449 (460)
T ss_pred -ecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec-----CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 336666677743210 00000 1234556677899999873 2579999774 999999999999999987
Q ss_pred Hhh
Q 042445 242 HAE 244 (246)
Q Consensus 242 ~~~ 244 (246)
..+
T Consensus 450 ~~~ 452 (460)
T PRK06105 450 VAA 452 (460)
T ss_pred HHH
Confidence 654
No 257
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.54 E-value=9.3e-13 Score=113.79 Aligned_cols=199 Identities=16% Similarity=0.127 Sum_probs=128.3
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI 99 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~ 99 (246)
|. ..+.+++++|.++|++||+++|+||++.++...|..+ ....++-... +-+++|.++...+.+|.+++++
T Consensus 229 G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~-a~~~~gv~PD---ivt~gK~l~gG~~P~gav~~~~---- 300 (442)
T PRK13360 229 GVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF-AAQYFGVTPD---LLTCAKGLTNGAIPMGAVFVSS---- 300 (442)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-hhhhcCCCCc---eeeeeeccccCccceEEEEEcH----
Confidence 44 3577899999999999999999999998886655433 2222222112 3478999755338999999988
Q ss_pred cchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCccccC
Q 042445 100 LQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PCITCPKK 168 (246)
Q Consensus 100 ~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~ 168 (246)
++.+.+... ...+++.+|++.+++.+.|+...+. ...+..+++-+++.+.|+++ +.+.. +.
T Consensus 301 ----~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~-vr 372 (442)
T PRK13360 301 ----EIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE---GLLTRAARLAPYWEDALHSLRDAPHVID-IR 372 (442)
T ss_pred ----HHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCeee-ee
Confidence 888776531 2345578999999999988743222 23344455555566666543 22221 11
Q ss_pred CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~ 242 (246)
.-|++.-+.+..... +.......+...+.++||.+.++ .+.+||+.. .+++++++++++|.+++++.
T Consensus 373 -G~Gl~~~~~l~~~~~-~~~~~~~~~~~~l~~~Gvl~~~~-----~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 373 -NLGLVGAVELAPRDG-KPGKRAYEVFLKCFEKGLMIRYT-----GDILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred -ccceEEEEEEecCCC-CcchhHHHHHHHHHHCCcEEEec-----CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 224444455532110 11012233445567899998763 357999966 49999999999999998753
No 258
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.54 E-value=7.8e-13 Score=113.90 Aligned_cols=196 Identities=11% Similarity=0.034 Sum_probs=126.6
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG 98 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~ 98 (246)
|. ..++++++++.++|++||+++|.||++.++...|..+ ....++-... +-+++|.++ .| +.+|.+++++
T Consensus 238 G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-a~e~~gv~PD---ivt~gK~lg-~G~~Pigavv~~~--- 309 (442)
T TIGR03372 238 GVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF-ACEHEGVQPD---ILCLAKALG-GGVMPIGATIATE--- 309 (442)
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccch-hhhhcCCCCC---eeeehhhhc-CCcccceEEEecH---
Confidence 44 4567899999999999999999999999876665432 2222222222 345899975 57 6899999987
Q ss_pred CcchhhHHHHHHHH---hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCC-CCccccCCCCce
Q 042445 99 ILQDSGIVDSIKIF---LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIP-CITCPKKPEGSM 173 (246)
Q Consensus 99 ~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~g~ 173 (246)
++.+.+... ...+++.||++.+++.+.|+...+ ...++.++.-...++.+.+..++.| .+.. + ..-|.
T Consensus 310 -----~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~-v-RG~Gl 382 (442)
T TIGR03372 310 -----AVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIE-A-RGKGL 382 (442)
T ss_pred -----HHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEE-E-ecceE
Confidence 888877422 234557799999999999885332 2223222222222333333223344 2222 1 23477
Q ss_pred EEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445 174 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFY 239 (246)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~ 239 (246)
++.+.+.... ....+...+.++||++.+... ..+.+||++.. +++++++++++|.+++
T Consensus 383 ~~giel~~~~------~~~~i~~~l~~~Gvl~~~~~~--~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 383 LMAIEFRDNE------IGYAFAKELFQQNILVAGTLN--NAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred EEEEEeCChH------HHHHHHHHHHHCCcEEeecCC--CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 7777776431 334455567789999875321 25789999884 9999999999998763
No 259
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.54 E-value=6.7e-13 Score=104.42 Aligned_cols=198 Identities=14% Similarity=0.098 Sum_probs=121.8
Q ss_pred CccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccc-cCCceEEEEEeeCCC
Q 042445 20 VGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGI-VPGLRLGWLVTSDPN 97 (246)
Q Consensus 20 tG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~-~~g~r~G~i~~~~~~ 97 (246)
-|.+.| +++|.+++++||+++++||+|+.+.++..+-.+...++- .+..++.++++|++| +.| ||..+|.
T Consensus 206 DGdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G---Gyttgp~-- 277 (417)
T KOG1359|consen 206 DGDIAP---LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG---GYTTGPK-- 277 (417)
T ss_pred CCCccc---HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC---CCccCCh--
Confidence 455555 889999999999999999999988887655444444432 234589999999988 567 9999999
Q ss_pred CCcchhhHHHHHHHH-hhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE
Q 042445 98 GILQDSGIVDSIKIF-LNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF 174 (246)
Q Consensus 98 ~~~~~~~~~~~l~~~-~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 174 (246)
.++..+++. +++ ..+.+|.....+..++.- .-.-.+.....+.+.+++++..+.. |+.. .. ..-..
T Consensus 278 ------~li~llrqr~RpylFSnslppavV~~a~ka~dl--lm~s~~~i~~~~a~~qrfr~~me~a-GftI-sg-~~hPI 346 (417)
T KOG1359|consen 278 ------PLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDL--LMVSSKEIQSRQANTQRFREFMEAA-GFTI-SG-ASHPI 346 (417)
T ss_pred ------hHHHHHHhcCCceeecCCCChhhhhhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHhc-Ccee-cC-CCCCc
Confidence 999988876 332 213343333333444431 0011112222344555566665554 5542 11 11111
Q ss_pred EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
.-+-+.+..+ ..+...+ +.+.||.|..-++.-. .-.+|+.++. +++++++.++.+.++.+.+
T Consensus 347 ~pv~lGda~l-----A~~~ad~-lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 347 CPVMLGDARL-----ASKMADE-LLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred cceecccHHH-----HHHHHHH-HHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence 1122333321 4455454 5578999875333222 4578888884 8999999999999887654
No 260
>PRK05965 hypothetical protein; Provisional
Probab=99.54 E-value=8.7e-13 Score=114.49 Aligned_cols=202 Identities=13% Similarity=0.116 Sum_probs=132.0
Q ss_pred Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCC
Q 042445 20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPN 97 (246)
Q Consensus 20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~ 97 (246)
.|. ++|.+++++|.++|++||+++|.||+..+|...|..+ ....++-... +-+++|.+ ..| +.+|.+++++
T Consensus 228 gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~-a~~~~gv~PD---iv~~gKgl-~gG~~Pi~av~~~~-- 300 (459)
T PRK05965 228 GGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF-ACEAEGVVPD---LMTVAKGL-TSGYVPMGAVLMSD-- 300 (459)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhh-hHhhcCCCCC---eEEechhh-ccCCcceeEEEEcH--
Confidence 344 5677999999999999999999999999997776433 2222332222 44568996 457 5999999998
Q ss_pred CCcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccc
Q 042445 98 GILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE---IPCITCP 166 (246)
Q Consensus 98 ~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~ 166 (246)
++.+.+.. ....+++.||++.+++.+.|+...+.. ..+..++.-+.+.+.|++ .|.+..
T Consensus 301 ------~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~l~~l~~~~~v~~- 370 (459)
T PRK05965 301 ------HVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGG---LLANGQKAGPRFAAGLDALRAHPLVGD- 370 (459)
T ss_pred ------HHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHhhccCCCEEE-
Confidence 88877642 133456889999999999887433221 222233333444444433 433321
Q ss_pred cCCCCceEEEEEeccccc--cCCC---ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSLL--EGIN---SDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY 239 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~--~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~ 239 (246)
...-|+++-+++....- .... .....+...+.++||.+.+.. .+.+|++.. .+++++++++++|.+++
T Consensus 371 -vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g----~~~i~~~PpL~it~~ei~~~~~~l~~~l 445 (459)
T PRK05965 371 -VRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFG----DGVLGFAPALCCTEGEFDLIFERTRKTL 445 (459)
T ss_pred -EeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecC----CcEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence 22346666677743210 0000 113445666779999997632 467899866 39999999999999999
Q ss_pred HHHh
Q 042445 240 DRHA 243 (246)
Q Consensus 240 ~~~~ 243 (246)
++..
T Consensus 446 ~~~~ 449 (459)
T PRK05965 446 DDVL 449 (459)
T ss_pred HHHh
Confidence 8754
No 261
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.54 E-value=9.7e-13 Score=114.02 Aligned_cols=202 Identities=17% Similarity=0.125 Sum_probs=128.4
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI 99 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~ 99 (246)
|. .++.+++++|.++|++||+++|.||++.++...|..+.. ..++-...+++ ++|.++ .|+.+|.+++++
T Consensus 236 G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~-~~~gv~PDiv~---~gK~l~-gG~pi~av~~~~---- 306 (457)
T PRK05639 236 GIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFAS-EWFEVKPDLII---FGKGVA-SGMGLSGVIGRK---- 306 (457)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHH-HhcCCCCCEEE---echhhc-CCCcceeEEehH----
Confidence 44 567899999999999999999999999987666543221 22222223333 799964 579999999988
Q ss_pred cchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCceE
Q 042445 100 LQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMF 174 (246)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~ 174 (246)
++.+........+++.||+..+++.+.|+...+ ..+++.+ ++-+++.+.|++ .+-+.. ...-|.+
T Consensus 307 ----~i~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~----~~g~~l~~~L~~l~~~~~~~~~--VrG~Gl~ 376 (457)
T PRK05639 307 ----ELMDLTSGSALLTPAANPVISAAAEATLEIIEEENLLKNAL----KVGEFIKKRLLEMKESFEVIGD--VRGKGLM 376 (457)
T ss_pred ----HHHhhcCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHH----HHHHHHHHHHHHHHHhCCCEEe--eccceeE
Confidence 777732212224557899999988888874332 2233333 333444444433 432221 2233666
Q ss_pred EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
+.+.+......+.......+...+.++|+.+.+... .++.+||+... +++++++++++|.+++++..
T Consensus 377 ~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~--~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 377 IGVEIVKENGKPDPELTGKICWRAFELGLILPSYGM--FGNVIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeecCC--CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 666664321000001234455667789999876421 15789999884 99999999999999987653
No 262
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.54 E-value=1.3e-12 Score=112.32 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=132.6
Q ss_pred CccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCC
Q 042445 20 VGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPN 97 (246)
Q Consensus 20 tG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~ 97 (246)
.|.. ++++++++|.++|++||+++|+||++.++...|..+. ...++-...++ +++|.++ .| +.+|.+++++
T Consensus 220 gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a-~~~~gv~PDiv---~~gK~l~-gG~~p~~a~~~~~-- 292 (429)
T PRK06173 220 GGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFA-LEHAGVVPDIM---CIGKALT-GGYLTLSATITTE-- 292 (429)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchH-HHhcCCCCCEE---Eeehhhh-CCccccceEEecH--
Confidence 3554 7889999999999999999999999988755554331 11222222223 4899974 56 5788899888
Q ss_pred CCcchhhHHHHHHH------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC-CC
Q 042445 98 GILQDSGIVDSIKI------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK-PE 170 (246)
Q Consensus 98 ~~~~~~~~~~~l~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~ 170 (246)
++.+.+.. ....+++.+|++.+++.+.|+...+. ...+..+++-+.+.+.|+++.+...+.. -.
T Consensus 293 ------~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg 363 (429)
T PRK06173 293 ------AIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPAAEFDSVAEVRV 363 (429)
T ss_pred ------HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCeeeeec
Confidence 88887743 12234467899999999888743221 2355566666667776664322211111 12
Q ss_pred CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 171 GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 171 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
-|+.+-+.+.... ....+...+.++||.+.+.. +.+||.... +++++++++++|.+++.+..
T Consensus 364 ~Gl~~~iel~~~~------~~~~i~~~l~e~Gi~v~~~g-----~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 364 LGAIGVVEMKEPV------NMATLQPRFVEHGIWVRPFG-----KLVYIMPPFIISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred cceEEEEEeCCcc------cHHHHHHHHHHCCeEEEecC-----CEEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 3666667675431 33455667888999997742 589999874 99999999999999998754
No 263
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=99.53 E-value=2.3e-14 Score=114.66 Aligned_cols=203 Identities=19% Similarity=0.178 Sum_probs=147.1
Q ss_pred CCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCC--CCcccccc-CCcccEEEEcccccccccCCceEEEE
Q 042445 15 FQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNT--PFVSMGVF-GSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 15 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
..|||||+..+.++|++|.++.++.+.+-+.|-+|.+|..+.- ...++..+ ....++++..|++|-+|+.|-|+|.+
T Consensus 206 CaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~ 285 (427)
T KOG1411|consen 206 CAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGAL 285 (427)
T ss_pred hhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhcccee
Confidence 4489999999999999999999999999999999999987642 22233333 33457899999999999999999994
Q ss_pred --EeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch--HHH---HHHHHHHHHHHHHHHHHHhhc--CC
Q 042445 92 --VTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE--EEF---FSKIIDILRETADKCCDRLKE--IP 161 (246)
Q Consensus 92 --~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~--~~~---~~~~~~~~~~~~~~l~~~L~~--~~ 161 (246)
++.+++... .+-..++.. ++++++++.-+...+..+|++.+ ..| +.-..+++...|+.+.+.|+. .+
T Consensus 286 svvc~~ad~A~---rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~ 362 (427)
T KOG1411|consen 286 SVVCKDADEAK---RVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSP 362 (427)
T ss_pred EEEecCHHHHH---HHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCC
Confidence 666642111 233344444 55677788888888889998765 233 556667778888888888876 33
Q ss_pred CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec-ChHHHHHHHHHHHHH
Q 042445 162 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-EPSALENGLGRMKAF 238 (246)
Q Consensus 162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l~~~ 238 (246)
+-+....-+-|||.+-.+ +.+++..+.+++.|+..--. |+|++- +...+....+.|.+.
T Consensus 363 ~~W~hI~~QIGMF~fTgl----------~peQv~~l~ke~~iYmT~dG--------RiS~aG~ss~nV~yLa~aih~v 422 (427)
T KOG1411|consen 363 GNWSHITKQIGMFCFTGL----------NPEQVDWLTKEYHIYLTKDG--------RISMAGLSSSNVPYLADAIHAV 422 (427)
T ss_pred ccHHHHHHhhheeeecCC----------CHHHHHHHHhhheeeeccCc--------eEeeccccccCCcccchhhHhH
Confidence 433344556799988655 45777888999999886533 899884 555555555555544
No 264
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.53 E-value=1.2e-12 Score=113.55 Aligned_cols=204 Identities=14% Similarity=0.110 Sum_probs=130.6
Q ss_pred CccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445 20 VGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI 99 (246)
Q Consensus 20 tG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~ 99 (246)
.+.+++.+++++|.++|++||+++|.||+++++...|..+. ...++-...++ +++|.++...+.+|.+++++
T Consensus 242 g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa-~e~~gv~PDiv---~~gKgl~gG~~P~~av~~~~---- 313 (459)
T PRK06082 242 DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFT-HQAYGIEPDIL---CIGKGLGGGLVPIAAMITKD---- 313 (459)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhH-hHhhCCCCCEE---EecccccCCCCcceEEEEcH----
Confidence 35577889999999999999999999999998866664332 22222222333 38999764336999999987
Q ss_pred cchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCceE
Q 042445 100 LQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMF 174 (246)
Q Consensus 100 ~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~ 174 (246)
++....... ...+++.||++.+++.+.|+.-.+. ...+..+++-+++.+.|++ .+.+.. +. .-|.+
T Consensus 314 ----~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vr-G~Gl~ 384 (459)
T PRK06082 314 ----KYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLLEMKAKYPLIGD-VR-GIGLL 384 (459)
T ss_pred ----HHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCeee-ee-eccce
Confidence 655433211 1145588999999998888743221 2334444444555555543 432221 22 33666
Q ss_pred EEEEeccccc-c-CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445 175 VMVKLNYSLL-E-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 175 ~~~~~~~~~~-~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~ 244 (246)
+.+++....- . ........+...+.++||.+.+.. .+.+|++... ++++++++++++.+++.+..+
T Consensus 385 ~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~----~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 454 (459)
T PRK06082 385 WGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQ----GNVIQLSPPLIITREELTQALAILEEAIAKICQ 454 (459)
T ss_pred eEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecC----CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhh
Confidence 6677743210 0 000112344556678999987742 4789999764 999999999999999987654
No 265
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.53 E-value=1.3e-12 Score=112.92 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=131.4
Q ss_pred Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445 20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98 (246)
Q Consensus 20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~ 98 (246)
.|. ..+.+++++|.++|++||+++|.||+++++...|..+ ....++-... +.++||.++...+.+|.+++++
T Consensus 231 ~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~-~~~~~gv~PD---i~~~gK~l~gG~~Pi~av~~~~--- 303 (445)
T PRK09221 231 AGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAF-AAERFGVTPD---IITFAKGLTNGAIPMGAVIASD--- 303 (445)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhh-HHHhcCCCCC---EEEeccccccCcccceeeEEcH---
Confidence 355 4567899999999999999999999999876665433 1122221112 4578999754447899999988
Q ss_pred CcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC---CCCcccc
Q 042445 99 ILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI---PCITCPK 167 (246)
Q Consensus 99 ~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~ 167 (246)
++.+.+.. .+..+++.+|++.+++.+.|+...+. ...+..++..+.+.+.|+++ +.+.. +
T Consensus 304 -----~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~-v 374 (445)
T PRK09221 304 -----EIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE---DLFERAAELAPYFEDAVHSLKGLPHVID-I 374 (445)
T ss_pred -----HHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhccCCCEEE-E
Confidence 88877643 12345578999998888888743222 23455566666666666654 22221 1
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~ 242 (246)
. .-|.+.-+.+..... +.......+.+.+.++||.+.++ .+.+||+.. .+++++++++++|.+++++.
T Consensus 375 r-g~Gl~~~v~~~~~~~-~~~~~~~~~~~~~~~~Gv~~~~~-----~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 375 R-NIGLVAGIELAPRPG-APGARGYEAFMKCFEKGLLVRYT-----GDTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred e-cCceEEEEEEecccc-cccchHHHHHHHHHHCCeEEeec-----CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 1 235555566643211 01012234456677899998763 367999966 49999999999999999764
No 266
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.53 E-value=4.3e-13 Score=113.19 Aligned_cols=206 Identities=15% Similarity=0.084 Sum_probs=140.4
Q ss_pred Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445 20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98 (246)
Q Consensus 20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~ 98 (246)
+|+ ++++..++++.++|++||+++|.||+-.+|..+|+.|.+- ..+-..-+-+++|.++..=+.+|.+++++
T Consensus 228 gG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e----~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~--- 300 (449)
T COG0161 228 GGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACE----HAGIVPDILCLAKGLTGGYLPLSAVLTSD--- 300 (449)
T ss_pred CCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhh----hcCCCCCeeeecccccccchhhHhHhhhH---
Confidence 454 4566899999999999999999999999999888655332 21222235567899665558888899988
Q ss_pred CcchhhHHHHHHHH------hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 99 ILQDSGIVDSIKIF------LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 99 ~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++.+.+..- ++.+++.||++++++.+.|+--. +.++++.++.-....+.+.+.|.+.|.+.. .-.-
T Consensus 301 -----~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~p~Vgd--VR~~ 373 (449)
T COG0161 301 -----RIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADHPLVGD--VRGL 373 (449)
T ss_pred -----HHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccCCcEEE--eecc
Confidence 888877653 44677999999999999888533 345555554444444444444444444432 2234
Q ss_pred ceEEEEEeccccccC--C-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445 172 SMFVMVKLNYSLLEG--I-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 172 g~~~~~~~~~~~~~~--~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~ 244 (246)
|+..-+++....-.. . ......+...+.++|++++|.. +.+=++... +++++++.++.+.+++++...
T Consensus 374 Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g-----~~i~~~PPliit~~eid~l~~~l~~al~~~~~ 446 (449)
T COG0161 374 GLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLG-----DVIYLMPPLIITREEIDELVDALREALDETLA 446 (449)
T ss_pred ceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecC-----CEEEEcCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 777777775442100 0 0125567788889999999963 244444443 899999999999999987653
No 267
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.52 E-value=1.9e-12 Score=107.22 Aligned_cols=220 Identities=16% Similarity=0.089 Sum_probs=150.5
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.++++++++ .+..-||-||++.| +++|.++|+++++++.+|-+.+..- -+..+..++ --+..-|-
T Consensus 132 e~L~~al~~~T~LVSim~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa~Gk----ipi~~~~~~---vD~ls~Sa 201 (386)
T COG1104 132 EQLEEALRPDTILVSIMHANNETGTIQP---IAEIGEICKERGILFHVDAVQAVGK----IPIDLEELG---VDLLSFSA 201 (386)
T ss_pred HHHHHhcCCCceEEEEEecccCeeeccc---HHHHHHHHHHcCCeEEEehhhhcCc----eeccccccC---cceEEeeh
Confidence 5677888877 55677999999988 8999999999999999999887522 111222221 11444456
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhh-cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNI-SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
.|++|..| +|.++..+.-..- .++..=-+..+. ....|..+..++..+++. ....++....+++..++.+.+.
T Consensus 202 HK~~GpkG--iGaLyv~~~~~~~---p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~-a~~~~~~~~~~~~~lr~~l~~~ 275 (386)
T COG1104 202 HKFGGPKG--IGALYVRPGVRLE---PLIHGGGQERGLRSGTENVPGIVGFGKAAEI-AVEELEEENARLRKLRDRLEDG 275 (386)
T ss_pred hhccCCCc--eEEEEECCCCccC---ceeccCcCCCCCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 69988888 7888875521110 111111111222 224566666666666663 3566777778889999999999
Q ss_pred hhc-CCCCccccC--CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-------------------C
Q 042445 157 LKE-IPCITCPKK--PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-------------------K 214 (246)
Q Consensus 157 L~~-~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-------------------~ 214 (246)
|.+ +|++..... +.-.+.+.+.|+.- ..+.+...|..+||++..|+.|.. .
T Consensus 276 l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-------~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~ 348 (386)
T COG1104 276 LLEIIPDVYLNGDDEPRLPNILNFSFPGV-------EGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAH 348 (386)
T ss_pred HHhcCCcEEEcCCcccCCCCeEEEEeCCC-------cHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhC
Confidence 987 466543212 23455666666643 556667788899999999999863 4
Q ss_pred CeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445 215 DWLRITFAV--EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~ 244 (246)
+.|||||+. ++++++.+++.|.+.++++++
T Consensus 349 ~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 349 GSIRFSLGRFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred ccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 899999995 899999999999999988764
No 268
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.52 E-value=2.7e-12 Score=107.56 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=102.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~ 90 (246)
++-.|.||+-.+.+ +++|.++|+++|+++|+|++|....+.. ++ .++ --|+++|.+|.+++.+ +=.|.
T Consensus 154 ~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~----PL-~~G---aDIVvhSaTKyl~GHsDvl~G~ 222 (396)
T COG0626 154 FLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR----PL-ELG---ADIVVHSATKYLGGHSDVLGGV 222 (396)
T ss_pred EEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC----hh-hcC---CCEEEEeccccccCCcceeeeE
Confidence 88899999877765 9999999999999999999999766543 11 122 2299999999998866 44454
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-h-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-L-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK 168 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 168 (246)
+++++. .+.+.+... . ..+..++|...+.+.+-++. +.-+.++..+++..+.+.|++.|.+..+..
T Consensus 223 v~~~~~-------~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT-----L~~Rm~~~~~nA~~IA~~L~~~p~V~~V~y 290 (396)
T COG0626 223 VLTPNE-------ELYELLFFAQRANTGAVLSPFDAWLLLRGLRT-----LALRMERHNENALKIAEFLADHPKVKKVYY 290 (396)
T ss_pred EecChH-------HHHHHHHHHHHhhcCCCCCHHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHhcCCCeEEEEC
Confidence 554552 455554333 2 25557899998888888875 777778888999999999999888876666
Q ss_pred CC
Q 042445 169 PE 170 (246)
Q Consensus 169 ~~ 170 (246)
|.
T Consensus 291 Pg 292 (396)
T COG0626 291 PG 292 (396)
T ss_pred CC
Confidence 63
No 269
>PRK12403 putative aminotransferase; Provisional
Probab=99.51 E-value=4.6e-12 Score=110.06 Aligned_cols=204 Identities=15% Similarity=0.147 Sum_probs=129.6
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG 98 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~ 98 (246)
|. ..+.+++++|.++|++||+++|.||+++++...|..+. ...++-...++ +++|.++ .| +.+|.+++++
T Consensus 236 G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a-~e~~gv~PDiv---~~gK~lg-gG~~Piga~v~~~--- 307 (460)
T PRK12403 236 GMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFA-HEHFGFEPDTL---SIAKGLT-SGYVPMGGLVLSK--- 307 (460)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhh-hhhcCCCCCeE---EEccccc-ccccceEEEEECH---
Confidence 54 45778999999999999999999999998877665432 22232222333 4899964 46 4999999987
Q ss_pred CcchhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhchH-HHHHHHH-HHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 99 ILQDSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTEE-EFFSKII-DILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 99 ~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
++.+.+... ...+++.||++.+++.+.|+...+ ..+++.+ +.-...++.+.+..++.+.+.. ...-
T Consensus 308 -----~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~--vrG~ 380 (460)
T PRK12403 308 -----RIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGE--VQGA 380 (460)
T ss_pred -----HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCCCEEe--Eeec
Confidence 887777531 233557899999999999885332 2333332 2222223333333334543321 2244
Q ss_pred ceEEEEEeccccc-c-CCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445 172 SMFVMVKLNYSLL-E-GINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 172 g~~~~~~~~~~~~-~-~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~ 244 (246)
|.++.+++..... . .... ....+...+.++|+.+.+.. +.+|++... ++++++++++.+.+++++..+
T Consensus 381 Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~-----~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 381 GLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRSTL-----GRMIMAPALVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred ceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6667777743210 0 0000 12223445678999997532 458898885 999999999999999988754
No 270
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.51 E-value=1.7e-12 Score=112.20 Aligned_cols=193 Identities=15% Similarity=0.162 Sum_probs=118.8
Q ss_pred cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445 22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ 101 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~ 101 (246)
..+|++++++|.++|++||+++|.||+++++...|..+ ....++-... +-+++|.++ +|.+++.+
T Consensus 241 ~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~gv~PD---iv~~gK~l~-----~~a~l~~~------ 305 (443)
T PRK08297 241 NHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAW-AYQQLGVRPD---IVAFGKKTQ-----VCGIMAGR------ 305 (443)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHH-HHHhcCCCCC---EEEeccccc-----ccceecch------
Confidence 34678999999999999999999999999887665432 2122222222 335789963 24444444
Q ss_pred hhhHHHHHHH------HhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE
Q 042445 102 DSGIVDSIKI------FLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF 174 (246)
Q Consensus 102 ~~~~~~~l~~------~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 174 (246)
++.+.+.. ....+++.||++..++.+.|+...+ ..+++.++.-+..++.+.+..++.+.+...+... |.+
T Consensus 306 --~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~-G~~ 382 (443)
T PRK08297 306 --RVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGR-GLM 382 (443)
T ss_pred --HHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeecc-ceE
Confidence 32221111 1234557899999999988874322 2333333333333333333333344332112333 677
Q ss_pred EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445 175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~ 242 (246)
+.+++.... ....+...+.++||.+.|+. .+.+||+++ .+++++++++++|.++++++
T Consensus 383 ~~i~~~~~~------~~~~~~~~l~~~Gvl~~~~~----~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 383 CAFDLPTTA------DRDEVIRRLWEEGVLVLPCG----ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred EEEEecCHH------HHHHHHHHHHHCCEEEecCC----CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 777775421 23344555668999998854 467899655 48999999999999998764
No 271
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.51 E-value=1.5e-12 Score=113.05 Aligned_cols=205 Identities=16% Similarity=0.097 Sum_probs=134.4
Q ss_pred CCCcc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeC
Q 042445 18 FHVGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSD 95 (246)
Q Consensus 18 NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~ 95 (246)
.-.|. .+++++++++.++|++||+++|.||++.++...|..+ ....++-... +-+++|.+ ..| +.+|.+++++
T Consensus 248 g~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~-a~e~~gv~PD---iv~~gKgl-~gG~~Plaav~~~~ 322 (472)
T PRK08742 248 CAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLF-ACEQAGVMPD---LLCLSKGL-TGGFLPLSAVLATQ 322 (472)
T ss_pred cCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch-HHHhcCCCCC---EEEEcccc-cCCCCCcceeeccH
Confidence 33455 5678999999999999999999999999997776443 2222332223 44458996 456 5999999998
Q ss_pred CCCCcchhhHHHHHHH-------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445 96 PNGILQDSGIVDSIKI-------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK 168 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 168 (246)
++.+.+.. ....+++.||++.+++.+.|+.-.+..+.+..+...+....+.+.+++.+.+.. +.
T Consensus 323 --------ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~~~~~~i~d-vR 393 (472)
T PRK08742 323 --------QLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVAD-VR 393 (472)
T ss_pred --------HHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCeee-Ee
Confidence 88776642 123455789999999999988544333333333333333344445555554432 22
Q ss_pred CCCceEEEEEeccccc--cCCCCh---HHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLL--EGINSD---MEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~--~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
.-|+++-+++....- .....+ ...+.+.+.++||.+.+. .+.|||.... +++++++++++|.+++++
T Consensus 394 -G~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----g~vi~~~PpL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 394 -QAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL-----GDVLYWMPPYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred -ccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 346777777743210 000001 134455677899999873 2689998774 999999999999999976
Q ss_pred H
Q 042445 242 H 242 (246)
Q Consensus 242 ~ 242 (246)
.
T Consensus 468 ~ 468 (472)
T PRK08742 468 A 468 (472)
T ss_pred H
Confidence 4
No 272
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.51 E-value=3.7e-12 Score=110.36 Aligned_cols=199 Identities=14% Similarity=0.091 Sum_probs=130.9
Q ss_pred Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCC
Q 042445 20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPN 97 (246)
Q Consensus 20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~ 97 (246)
.|. .++.++++++.++|++||+++|.||++.++...|..+ ....++-... +-+++|.++ .| +.+|.+++++
T Consensus 235 gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~f-a~~~~gv~PD---ivt~gKgl~-gG~~Pi~av~~~~-- 307 (453)
T PRK06943 235 AGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFF-ACEQAGVWPD---FLCLSKGIS-GGYLPLSLVLSRD-- 307 (453)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchh-HHHhCCCCCC---eEeeehhhc-cCcccceEEEEcH--
Confidence 454 5688999999999999999999999999987666433 2222332223 444589965 57 6999999998
Q ss_pred CCcchhhHHHHHHHH-------hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhh---cCCCCccc
Q 042445 98 GILQDSGIVDSIKIF-------LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLK---EIPCITCP 166 (246)
Q Consensus 98 ~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~---~~~~~~~~ 166 (246)
++.+.+... ...+++.||++.+++.+.|+...+ +.+++.+ +.-+.+.+.|+ +.+.+..
T Consensus 308 ------ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~----~~G~~l~~~L~~l~~~~~v~~- 376 (453)
T PRK06943 308 ------AIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNA----RKSARLRAALAPLAAHPQVRH- 376 (453)
T ss_pred ------HHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH----HHHHHHHHHHHHHhcCCCEEe-
Confidence 888776521 333557899999999999885433 2233333 33333333333 3444432
Q ss_pred cCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445 167 KKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~ 243 (246)
+. .-|+++-+++....- ........+...+.++||.+.+.. +.+||+.. .+++++++++++|.+++++..
T Consensus 377 vr-G~Gl~~gvel~~~~~-~~~~~~~~i~~~~~~~Gll~~~~g-----~~l~~~Ppl~it~~eid~~~~~l~~al~~~~ 448 (453)
T PRK06943 377 LR-QRGTIFAFDVALDGD-AARTFSRRFFEAALERELLLRPIG-----TTVYLMPPYVLDDDEIAWLAERTRATLDATL 448 (453)
T ss_pred Ee-ccccEEEEEEccCCC-cchHHHHHHHHHHHHCCcEEEecC-----CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 22 346666677752210 000113345566778999987632 46899955 599999999999999998754
No 273
>PRK07482 hypothetical protein; Provisional
Probab=99.50 E-value=4.2e-12 Score=110.28 Aligned_cols=206 Identities=14% Similarity=0.047 Sum_probs=131.6
Q ss_pred ccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445 21 GSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG 98 (246)
Q Consensus 21 G~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~ 98 (246)
|.. ++++++++|.++|++||+++|.||++.++...|..+. ...++-... +-+++|.+ ..| +.+|.+++.+
T Consensus 234 G~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a-~~~~gv~PD---iv~~gKgl-~gG~~Pi~av~~~~--- 305 (461)
T PRK07482 234 GIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFG-SDHYGIEPD---LITVAKGL-TSAYAPLSGSIVGE--- 305 (461)
T ss_pred CCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhh-HHhcCCCCC---EEEEcccc-ccCccccceeeecH---
Confidence 554 6778999999999999999999999999977665432 223332223 33468996 456 4899999988
Q ss_pred CcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 99 ILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 99 ~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
++.+.+.. .+..+++.||++.+++.+.|+.-.+ ..++..++.-...++.+.+..++.+.+.. ..
T Consensus 306 -----~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~--vr 378 (461)
T PRK07482 306 -----KVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPLVGE--VR 378 (461)
T ss_pred -----HHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCEEE--Ee
Confidence 87776652 1234558899999999999885332 23333333322233333333334443321 22
Q ss_pred CCceEEEEEeccccc--cCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLL--EGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~ 242 (246)
.-|.++-+++....- ..... ....+...+.++||++.++. ..+.+|+... .++++++++++.+.+++++.
T Consensus 379 G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~---~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 379 GVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP---HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred eceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 346666777753210 00000 12345566778999986532 1467899855 49999999999999999875
Q ss_pred hh
Q 042445 243 AE 244 (246)
Q Consensus 243 ~~ 244 (246)
.+
T Consensus 456 ~~ 457 (461)
T PRK07482 456 LG 457 (461)
T ss_pred HH
Confidence 43
No 274
>PRK07483 hypothetical protein; Provisional
Probab=99.50 E-value=1.9e-12 Score=111.87 Aligned_cols=208 Identities=17% Similarity=0.141 Sum_probs=133.2
Q ss_pred cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCc-eEEEEEeeCCCCCc
Q 042445 22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGL-RLGWLVTSDPNGIL 100 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~-r~G~i~~~~~~~~~ 100 (246)
..++++++++|.++|++||+++|.||++.++...|..+ ....++-... +-+++|.+ ..|+ .+|.+++++
T Consensus 216 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~-a~~~~gv~PD---iv~~gK~l-~gG~~Pi~av~~~~----- 285 (443)
T PRK07483 216 VPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLF-ACEEDGVAPD---LVTIAKGL-GAGYQPIGAVLASD----- 285 (443)
T ss_pred EeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHH-HHhhcCCCCC---eeeehhhh-ccCccccEEEEEcH-----
Confidence 46678899999999999999999999999887666433 2222222222 45568996 5575 999999998
Q ss_pred chhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE
Q 042445 101 QDSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF 174 (246)
Q Consensus 101 ~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 174 (246)
++.+.+... +..+++.||++.+++.+.|+...+ ..+++.++.-...++.+.+.+++.+.+.. +. .-|++
T Consensus 286 ---~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vR-G~Glm 360 (443)
T PRK07483 286 ---RIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHPHVGD-IR-GRGLF 360 (443)
T ss_pred ---HHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCeee-Ee-ecccE
Confidence 888877532 234557899999999999875332 23333333222233333333334443321 22 34666
Q ss_pred EEEEecccc--ccCCC---ChHHHHHHHHHhcCeEEecCCCc--CC-CCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445 175 VMVKLNYSL--LEGIN---SDMEFALKLAKEESVIVLPGITV--GL-KDWLRITFAV--EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 175 ~~~~~~~~~--~~~~~---~~~~~~~~ll~~~gi~v~pg~~f--~~-~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~ 244 (246)
+-+++.... ..... ...+.+...+.++||++.+.... +. .+.+||.... +++++++++++|.+++.+...
T Consensus 361 ~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~ 440 (443)
T PRK07483 361 VGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA 440 (443)
T ss_pred EEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 666664321 00000 11244566677899999874321 11 4789998774 999999999999999987653
No 275
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.50 E-value=5.2e-12 Score=107.02 Aligned_cols=144 Identities=12% Similarity=0.074 Sum_probs=104.7
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG 75 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (246)
+.+++.+.++ ++.+|+||+|.+.+ +++|+++|+++ |+++++|.+|+....- .+. .++ --++++
T Consensus 138 ~~l~~~l~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~~----~pl-~~G---aDivv~ 206 (395)
T PRK08114 138 ADIAKLIQPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVLF----KAL-DFG---IDISIQ 206 (395)
T ss_pred HHHHHhcCCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCcccccc----CHH-HcC---CcEEEE
Confidence 4456666654 88899999999987 89999999998 4999999999853321 111 122 239999
Q ss_pred ccccccccCC-ceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445 76 SISKRGIVPG-LRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC 153 (246)
Q Consensus 76 s~sK~~~~~g-~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (246)
|.+|.+++++ +-.|.++.++ +..+.++.. ...+..++|.....+.+-|+. +.-+.++..++...+
T Consensus 207 S~tKyl~Ghsdv~~G~v~~~~--------~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T-----L~lR~~~~~~na~~v 273 (395)
T PRK08114 207 AGTKYLVGHSDAMIGTAVANA--------RCWEQLRENSYLMGQMVDADTAYMTSRGLRT-----LGVRLRQHEESSLKV 273 (395)
T ss_pred cCcccccCCCcceeEEEEcCH--------HHHHHHHHHHHhccCCCCHHHHHHHHcCCCc-----HHHHHHHHHHHHHHH
Confidence 9999888876 6677666555 666666644 334546788888877777774 777777888999999
Q ss_pred HHHhhcCCCCccccCC
Q 042445 154 CDRLKEIPCITCPKKP 169 (246)
Q Consensus 154 ~~~L~~~~~~~~~~~~ 169 (246)
.+.|+++|.+..+..|
T Consensus 274 a~~L~~hp~V~~V~yP 289 (395)
T PRK08114 274 AEWLAEHPEVARVNHP 289 (395)
T ss_pred HHHHHcCCCEeEEECC
Confidence 9999988766544444
No 276
>PRK07480 putative aminotransferase; Validated
Probab=99.50 E-value=2.6e-12 Score=111.38 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=130.7
Q ss_pred Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCC
Q 042445 20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPN 97 (246)
Q Consensus 20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~ 97 (246)
.|. ..+.+++++|.++|++||+++|.||++.++...|..+ ....++-... +-+++|.++ .| +.+|.+++++
T Consensus 232 gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~-a~~~~gv~PD---iv~~gK~l~-gG~~Pi~av~~~~-- 304 (456)
T PRK07480 232 GGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWF-GSQHFGIKPD---LMTIAKGLT-SGYIPMGAVGVGD-- 304 (456)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh-hhhhcCCCCC---eeeeehhhc-cCCccceEEEEcH--
Confidence 355 4677899999999999999999999999886665433 2222322222 456789965 46 5899999988
Q ss_pred CCcchhhHHHHHHH-----HhhhcCCCCchHHHHHHHHHhhchH-HHHHHHH-HHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445 98 GILQDSGIVDSIKI-----FLNISSDPATFIQGAVPQILEKTEE-EFFSKII-DILRETADKCCDRLKEIPCITCPKKPE 170 (246)
Q Consensus 98 ~~~~~~~~~~~l~~-----~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~~ 170 (246)
++.+.+.. ....+++.||++.+++.+.|+...+ ..+++.+ +.-...++.+.+ +++.+.+.. +. .
T Consensus 305 ------~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~-l~~~~~i~~-vr-G 375 (456)
T PRK07480 305 ------RVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRE-LADHPLVGE-VR-G 375 (456)
T ss_pred ------HHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hhcCCCeee-EE-e
Confidence 88887732 1334668899999999999985332 2233331 221222222222 334432322 22 3
Q ss_pred CceEEEEEeccccc--cCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 171 GSMFVMVKLNYSLL--EGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 171 ~g~~~~~~~~~~~~--~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
-|+++-+++....- ....+ ....+...+.++||.+.+. .+.+||+... +++++++++++|.+++.+.+
T Consensus 376 ~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-----~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~ 450 (456)
T PRK07480 376 VGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV-----GDRMIISPPLVITHAEIDELVEKARKALDATA 450 (456)
T ss_pred ecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36666677743210 00001 1234555677899998762 2679999885 99999999999999998875
Q ss_pred h
Q 042445 244 E 244 (246)
Q Consensus 244 ~ 244 (246)
+
T Consensus 451 ~ 451 (456)
T PRK07480 451 A 451 (456)
T ss_pred H
Confidence 4
No 277
>PRK06062 hypothetical protein; Provisional
Probab=99.49 E-value=1.9e-12 Score=112.16 Aligned_cols=198 Identities=17% Similarity=0.200 Sum_probs=126.7
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCCCcc
Q 042445 23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNGILQ 101 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~~~~ 101 (246)
.++.+++++|.++|++||+++|.||+++++...|..+ ....++-... +.+++|.++ .| +.+|.+++++
T Consensus 231 ~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~-a~~~~gv~PD---i~t~gK~lg-gG~~Pigav~~~~------ 299 (451)
T PRK06062 231 VPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWF-AIEHFGVVPD---LITFAKGVN-SGYVPLGGVAISE------ 299 (451)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHH-HHHhcCCCCC---eeeechhhh-cCCcCcEEEEEcH------
Confidence 4678999999999999999999999999876555432 1112221112 557899964 56 5999999998
Q ss_pred hhhHHHHHHHH---hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHhh----cCCCCccccCCCCce
Q 042445 102 DSGIVDSIKIF---LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETA-DKCCDRLK----EIPCITCPKKPEGSM 173 (246)
Q Consensus 102 ~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~L~----~~~~~~~~~~~~~g~ 173 (246)
++.+.+... ...+++.||++.+++.+.|+...+.. ..+..++.- +.+.+.|+ +.+.+.. +. .-|+
T Consensus 300 --~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l~~~L~~l~~~~~~v~~-vr-G~Gl 372 (451)
T PRK06062 300 --AIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEG---IVENAARIGAEVLGPGLRELAERHPSVGE-VR-GLGV 372 (451)
T ss_pred --HHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhcCCcEEe-Ee-cccc
Confidence 888877532 33456789999999999988533221 222222222 23333333 3432221 22 3356
Q ss_pred EEEEEecccc--ccCCC------ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445 174 FVMVKLNYSL--LEGIN------SDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 174 ~~~~~~~~~~--~~~~~------~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~ 243 (246)
++-+.+.... ..... .....+...+.++||.+.+. .+.+||+.. .++++++++++++.+++++..
T Consensus 373 ~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-----~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 373 FWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN-----GNRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred EEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec-----CCEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 6666664211 00000 01335566677899988652 467999875 499999999999999998765
No 278
>PLN02651 cysteine desulfurase
Probab=99.49 E-value=7.6e-13 Score=112.04 Aligned_cols=197 Identities=14% Similarity=0.038 Sum_probs=124.3
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++++++||||.+.+ +++|.++|+++|+++++|.+++..... ..+..++ --+++.|.
T Consensus 129 ~~l~~~i~~~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~g~~~----~~~~~~~---~D~~~~s~ 198 (364)
T PLN02651 129 DELAAAIRPDTALVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAVGKIP----VDVDDLG---VDLMSISG 198 (364)
T ss_pred HHHHHhcCCCcEEEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhhCCcc----cCcccCC---CCEEEech
Confidence 3456666554 77889999999988 789999999999999999999853321 1122222 23778889
Q ss_pred ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh--------hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL--------NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRET 149 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 149 (246)
.|.++.+ .+|+++..+ +....+.... ....+.+.....++.++++... ...++.+++.++.
T Consensus 199 hK~~gp~--G~g~l~v~~--------~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~-~~~~~i~~~~~~l 267 (364)
T PLN02651 199 HKIYGPK--GVGALYVRR--------RPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAM-KEMDYDEKHMKAL 267 (364)
T ss_pred hhhCCCC--ceEEEEEcC--------CCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 9964333 488888877 2222221110 0122556666677777776422 3357777888888
Q ss_pred HHHHHHHhhc-CCCCccccC--CC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----------
Q 042445 150 ADKCCDRLKE-IPCITCPKK--PE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL----------- 213 (246)
Q Consensus 150 ~~~l~~~L~~-~~~~~~~~~--~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~----------- 213 (246)
++.+.+.|++ ++++..+.+ +. ....+.+.++.. +..+ +...|.+ |.+..|..|..
T Consensus 268 ~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~------~~~~-~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~ 338 (364)
T PLN02651 268 RERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYV------EGES-LLMGLKE--VAVSSGSACTSASLEPSYVLRA 338 (364)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCC------CHHH-HHHHhCC--EEEEchhhcCCCCCCcCHHHHH
Confidence 8888888875 677764332 11 122344445421 2444 4545544 99988887632
Q ss_pred --------CCeEEEEeec--ChHHH
Q 042445 214 --------KDWLRITFAV--EPSAL 228 (246)
Q Consensus 214 --------~~~iRls~~~--~~~~l 228 (246)
.+.+|+|++. +++++
T Consensus 339 ~g~~~~~~~~~vR~S~~~~~t~~di 363 (364)
T PLN02651 339 LGVPEEMAHGSLRLGVGRFTTEEEV 363 (364)
T ss_pred cCCChHHhCceEEEEcCCCCCHHHc
Confidence 2689999995 66654
No 279
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.49 E-value=5.6e-12 Score=109.59 Aligned_cols=215 Identities=10% Similarity=0.013 Sum_probs=134.7
Q ss_pred hhhhhhh---ccc-cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcc
Q 042445 2 ELINQDI---TRE-FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~---~~~-~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s 76 (246)
+.+++.+ +++ ++... +.+|...+ +++|.++|+++|+++++|++++.......... ++. .--+++.|
T Consensus 172 ~~L~~~l~~~~~~lvi~~~-s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~-----~~D~l~~S 242 (452)
T PTZ00094 172 DKLEELAKAFRPKLIIAGA-SAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFP-----YADVVTTT 242 (452)
T ss_pred HHHHHHHHHhCCCEEEEeC-CCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCC-----CCcEEEcC
Confidence 3455555 233 33333 45888777 77888889999999999999997665432211 111 12388999
Q ss_pred cccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh------hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 042445 77 ISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL------NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETA 150 (246)
Q Consensus 77 ~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 150 (246)
..|.+++|. -|++.+.+ ++.+.+.... .+.++.+.....++..++........++.++++.+++
T Consensus 243 ~hK~l~GP~--Gg~l~~~~--------~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~ 312 (452)
T PTZ00094 243 THKSLRGPR--SGLIFYRK--------KVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNA 312 (452)
T ss_pred CccCCCCCC--ceEEEEec--------ccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 999764443 38888866 4333332221 1111445555556666665332344567778889999
Q ss_pred HHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEe-cCCCcCC----CCeEEEEeec--
Q 042445 151 DKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVL-PGITVGL----KDWLRITFAV-- 223 (246)
Q Consensus 151 ~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~-pg~~f~~----~~~iRls~~~-- 223 (246)
+.+.+.|++. |+............++.+.... . +.+.+..+|.++||.+. ++..+.. ++++|+|+..
T Consensus 313 ~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~---~--~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~~t 386 (452)
T PTZ00094 313 KALAAALEKR-GYDLVTGGTDNHLVLVDLRPFG---I--TGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPALT 386 (452)
T ss_pred HHHHHHHHhC-CcEEecCCCCCceEeecCCcCC---C--CHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHHHH
Confidence 9999999875 6553222111233444454322 1 45566777888999994 4433332 6899999863
Q ss_pred ----ChHHHHHHHHHHHHHHHH
Q 042445 224 ----EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 224 ----~~~~l~~~~~~l~~~~~~ 241 (246)
++++++++++.|.+.++.
T Consensus 387 t~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 387 TRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred hCCCCHHHHHHHHHHHHHHHHH
Confidence 389999999999998874
No 280
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.49 E-value=3.8e-12 Score=109.67 Aligned_cols=191 Identities=13% Similarity=0.082 Sum_probs=128.1
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCCCc
Q 042445 23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNGIL 100 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~~~ 100 (246)
.++.+++++|.++|++||+++|+||++.++...|..+.. ...+.+ .++ +++|.+ ..| +.++.+++++
T Consensus 225 ~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~p--Di~---~~gK~l-~gG~~p~~a~~~~~----- 293 (427)
T TIGR00508 225 FYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVP--DIL---CVGKAL-TGGYMTLSATVTTD----- 293 (427)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCC--CEE---Eechhh-hcCcccceEEEEcH-----
Confidence 557899999999999999999999999887666544322 222222 233 379997 467 4788888887
Q ss_pred chhhHHHHHHHH------hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc-CCCCce
Q 042445 101 QDSGIVDSIKIF------LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK-KPEGSM 173 (246)
Q Consensus 101 ~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~g~ 173 (246)
++.+.+... ...++..||++.+++.+.|+...+. ...+..+++.+++.+.|+++.....+. ...-|.
T Consensus 294 ---~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~ 367 (427)
T TIGR00508 294 ---KVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGA 367 (427)
T ss_pred ---HHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCEEeEecccc
Confidence 888887642 2234467899999998888742221 234556666666777776642111010 111255
Q ss_pred EEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445 174 FVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~ 241 (246)
++.+.+.... ....+...+.++||.+.+.. +.+|++.. .++++++++++++.+++++
T Consensus 368 ~~~i~~~~~~------~~~~~~~~l~~~Gv~~~~~~-----~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 368 IGVVEMYKPV------NVEELQKKFVEQGVWIRPFG-----KLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred EEEEEECCcc------CHHHHHHHHHHCCeEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 5666664321 33445666778999997632 47899887 4999999999999999864
No 281
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.49 E-value=6.9e-12 Score=107.81 Aligned_cols=194 Identities=13% Similarity=0.061 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHH
Q 042445 28 FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVD 107 (246)
Q Consensus 28 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~ 107 (246)
++.+|.++|++||+++++|++++...+..... . ..+. .--++++|++|.++++. -|++++.+. .+..
T Consensus 184 dl~~l~~la~~~g~~livD~Aha~G~~~~g~~-~-~~~~--~~Di~~~s~~K~l~g~~--GG~v~~~~~-------~~~~ 250 (416)
T PRK13034 184 DFARFREIADEVGALLMVDMAHIAGLVAAGEH-P-NPFP--HAHVVTTTTHKTLRGPR--GGMILTNDE-------EIAK 250 (416)
T ss_pred CHHHHHHHHHHcCCEEEEeCcccccCcccCCC-C-CCCC--CceEEEEeCcccCCCCC--CeEEEECcH-------HHHH
Confidence 58889999999999999999998665542111 1 1111 13488999999985442 277777662 3444
Q ss_pred HHHHHhhhc--CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC-CCceEEEEEeccccc
Q 042445 108 SIKIFLNIS--SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP-EGSMFVMVKLNYSLL 184 (246)
Q Consensus 108 ~l~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 184 (246)
.++.....+ .+..+....++...+.........+.++++.++.+.+.+.|++. |+.. ..+ .....+++.+....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~-~~~~~~t~i~~v~~~~~~- 327 (416)
T PRK13034 251 KINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDL-VSGGTDNHLLLVDLRPKG- 327 (416)
T ss_pred HHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEe-ccCCCCCcEEEEEcCCCC-
Confidence 444432221 12223333333323322111223455788899999999999887 6663 222 34566666665432
Q ss_pred cCCCChHHHHHHHHHhcCeEEecCC------CcCCCCeEEEEeec------ChHHHHHHHHHHHHHHHH
Q 042445 185 EGINSDMEFALKLAKEESVIVLPGI------TVGLKDWLRITFAV------EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 185 ~~~~~~~~~~~~ll~~~gi~v~pg~------~f~~~~~iRls~~~------~~~~l~~~~~~l~~~~~~ 241 (246)
.+...+.+.|+++||.+.+.. ....+..+|+++.. ++++++++++.|.+++.+
T Consensus 328 ----~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 328 ----LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred ----CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 145556677889999987521 11126789999653 579999999999988764
No 282
>PRK06149 hypothetical protein; Provisional
Probab=99.49 E-value=4e-12 Score=119.44 Aligned_cols=207 Identities=16% Similarity=0.138 Sum_probs=133.9
Q ss_pred CcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445 16 QVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 16 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~ 95 (246)
+++-....+++++++++.++|++||+++|.||++.++...|..+.....++-... +-+++|.+| .|+.+|.+++++
T Consensus 754 ~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD---ivt~gK~lg-~G~Pl~av~~~~ 829 (972)
T PRK06149 754 YGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPD---IITMAKGMG-NGHPLGAVITRR 829 (972)
T ss_pred ccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCC---EEEeccccc-CCeeeEEEEEcH
Confidence 3444446678899999999999999999999999988766643322222322223 337899964 679999999998
Q ss_pred CCCCcchhhHHHHHHH--HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccCC
Q 042445 96 PNGILQDSGIVDSIKI--FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPKKP 169 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~--~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~ 169 (246)
++.+.+.. ....+++.||++.+++.+.|+...++. ..+..++.-+++.+.|+ +.|.+.. +.
T Consensus 830 --------~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~~~i~~-vr- 896 (972)
T PRK06149 830 --------EIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEK---LQENARRVGDHLKARLEALADRHPLIGA-VH- 896 (972)
T ss_pred --------HHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEE-Ee-
Confidence 88887754 222344789999999999998433222 22233333334444443 3432221 22
Q ss_pred CCceEEEEEecccc--ccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSL--LEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 170 ~~g~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~ 241 (246)
.-|+++-+++.... ..........+...+.++||.+.|.... .+.+||... .+++++++++++|.+++++
T Consensus 897 G~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~--~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 897 GMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDH--LNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred ecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecCCC--CCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 34666777774211 0000012334556677899999874311 478999877 4999999999999999865
No 283
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.47 E-value=4.7e-12 Score=109.95 Aligned_cols=204 Identities=11% Similarity=0.032 Sum_probs=128.1
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI 99 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~ 99 (246)
|. .++.++++++.++|++||+++|.||+..++...|..+ ....++-... +-+++|.++ .|+.+|.+++.+
T Consensus 245 G~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~-a~e~~gv~PD---iv~~gKglg-gG~PlsAv~~~~---- 315 (464)
T PRK06938 245 GVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMF-AFEHAGIIPD---VVVLSKAIG-GSLPLAVVVYRE---- 315 (464)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHH-HHHhcCCCCC---EEEeecccc-CCCceEEEeehh----
Confidence 44 4568999999999999999999999999987666432 2222322222 444689975 579999999987
Q ss_pred cchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEE
Q 042445 100 LQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMV 177 (246)
Q Consensus 100 ~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~ 177 (246)
++ +.+... ...+++.||++.+++.+.|+...+ ...++.++.-...++.+.+..++.|.+.. ...-|+++.+
T Consensus 316 ----~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~--VrG~Glm~gi 388 (464)
T PRK06938 316 ----WL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYPQLGD--VRGRGLMLGV 388 (464)
T ss_pred ----Hh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeee--eeccceEEEE
Confidence 53 443222 334558899999999999885333 22233332222222222222233543322 2234677777
Q ss_pred Eeccccc-cC----CC---ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445 178 KLNYSLL-EG----IN---SDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 178 ~~~~~~~-~~----~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~ 242 (246)
++..... .+ .+ .....+...+.++||.+.++..+ .+.+||... .++++++++++++.+++.+.
T Consensus 389 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~--~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 389 EIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRH--GSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred EeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCC--CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 7743210 00 00 11234455677899999875322 478999866 39999999999999999764
No 284
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.47 E-value=1.1e-11 Score=106.64 Aligned_cols=148 Identities=11% Similarity=0.044 Sum_probs=96.6
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++.+|+||+|.+.+ +++|.++|+++|+++|+|.++...... .++ .++ --+++.|.
T Consensus 140 ~~l~~~i~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~----~pl-~~G---aD~vv~S~ 208 (433)
T PRK08134 140 DGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLL----RPF-EHG---ADLVYHSA 208 (433)
T ss_pred HHHHHhcCCCCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCcccccC----Cch-hcC---CCEEEecc
Confidence 4566667664 78889999999988 899999999999999999998754322 122 222 23889999
Q ss_pred ccccccCCceEEEEEeeCCC-CCc-----c--------------hh-----hHHHHHH--HHhhhcCCCCchHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPN-GIL-----Q--------------DS-----GIVDSIK--IFLNISSDPATFIQGAVPQI 130 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~-~~~-----~--------------~~-----~~~~~l~--~~~~~~~~~~~~~q~~~~~~ 130 (246)
+|.++.+|-.+|.+++.... .+. . .. .+..+.+ .....+..+++...+.+.+-
T Consensus 209 tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~g 288 (433)
T PRK08134 209 TKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQG 288 (433)
T ss_pred ccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcC
Confidence 99999899888887663210 000 0 00 0001111 11223335566666655555
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445 131 LEKTEEEFFSKIIDILRETADKCCDRLKEIPCITC 165 (246)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 165 (246)
|+. +..+.++..++...+.+.|+++|.+..
T Consensus 289 L~t-----l~~R~~~~~~nA~~la~~L~~~p~V~~ 318 (433)
T PRK08134 289 IET-----LPLRMERHVANTRKVVAFLASHPAVAR 318 (433)
T ss_pred CCc-----HHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 553 667777778889999999988776643
No 285
>PRK07481 hypothetical protein; Provisional
Probab=99.47 E-value=5e-12 Score=109.56 Aligned_cols=198 Identities=14% Similarity=0.130 Sum_probs=127.9
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG 98 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~ 98 (246)
|. .+++++++++.++|++||+++|.||++.++...|..+. ...++-... +-+++|.++ .| +.+|.+++++
T Consensus 227 G~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a-~~~~gv~PD---iv~~gKgl~-gG~~Pi~av~~~~--- 298 (449)
T PRK07481 227 GVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFG-SRGWGVKPD---IMCLAKGIT-SGYVPLGATMVNA--- 298 (449)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhH-hhhcCCCCC---EEEEeeccc-CCCcCceEEEEcH---
Confidence 44 56788999999999999999999999999876654332 122222222 444689964 56 6999999998
Q ss_pred CcchhhHHHHHHHH--------hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhc----CCCCcc
Q 042445 99 ILQDSGIVDSIKIF--------LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKE----IPCITC 165 (246)
Q Consensus 99 ~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~ 165 (246)
++.+.+... +..+++.||++.+++.+.|+...+ ..+++. ++.-+.+.+.|++ .+-+..
T Consensus 299 -----~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~----~~~g~~l~~~L~~l~~~~~~i~~ 369 (449)
T PRK07481 299 -----RIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANA----AKRGAYLLEGLQPLKERFELVGD 369 (449)
T ss_pred -----HHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHhhcCCCeEE
Confidence 888877531 234557899999999998874332 223333 3333334444433 432221
Q ss_pred ccCCCCceEEEEEeccccc-cCC----CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445 166 PKKPEGSMFVMVKLNYSLL-EGI----NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF 238 (246)
Q Consensus 166 ~~~~~~g~~~~~~~~~~~~-~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~ 238 (246)
+. .-|.++.+++..... +.. ......+...+.++||.+.+.. +.+|++... ++++++++++.+.++
T Consensus 370 -vr-G~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-----~~i~l~Ppl~it~~eid~~~~~l~~~ 442 (449)
T PRK07481 370 -VR-GKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSG-----TKIILSPPLVIQREDVDRIVDALDAG 442 (449)
T ss_pred -Ee-ecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEecC-----CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 22 336666677743210 000 0123345556778999998743 358998664 999999999999999
Q ss_pred HHHH
Q 042445 239 YDRH 242 (246)
Q Consensus 239 ~~~~ 242 (246)
+++.
T Consensus 443 l~~~ 446 (449)
T PRK07481 443 LSAV 446 (449)
T ss_pred HHhc
Confidence 9764
No 286
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.46 E-value=1.2e-11 Score=107.46 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=129.3
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG 98 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~ 98 (246)
|. .++++++++|.++|++||+++|.||++.++...|..+ ....++-... +-+++|.++ .| +.+|.+++++
T Consensus 229 G~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~-a~~~~gv~PD---iv~~gKgl~-gG~~Pi~av~~~~--- 300 (466)
T PRK07030 229 GMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMF-ACEQAGIRPD---FLCLSKALT-GGYLPLAAVLTTD--- 300 (466)
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccch-HHHhcCCCCC---EEeeehhcc-CCcccceEEEecH---
Confidence 44 5677999999999999999999999999987666433 2222332223 444589964 58 5999999998
Q ss_pred CcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh---hcCCCCcccc
Q 042445 99 ILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL---KEIPCITCPK 167 (246)
Q Consensus 99 ~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L---~~~~~~~~~~ 167 (246)
++.+.+.. ....+++.||++.+++.+.|+...++. ..+..++.-+++.+.| .+.+.+.. +
T Consensus 301 -----ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~~v~~-v 371 (466)
T PRK07030 301 -----TVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDN---VIENNRALARRMAEATAHLADHPHVAE-V 371 (466)
T ss_pred -----HHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhcCCCEEE-e
Confidence 88877642 133455789999999999988543322 2222333333333333 33443332 2
Q ss_pred CCCCceEEEEEeccccc--cCCCCh---HHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLL--EGINSD---MEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFYD 240 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~--~~~~~~---~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~ 240 (246)
. .-|+++-+++..... .+...+ ...+...+.++||.+.+. .+.+|+... .++++++++++++.++++
T Consensus 372 r-G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-----g~~i~~~Ppl~it~~eid~~~~~l~~al~ 445 (466)
T PRK07030 372 R-QTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL-----GSVVYFLPPYVITPEQIDFLAEVASEGID 445 (466)
T ss_pred E-eceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec-----CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 2 346667777743210 000001 134555677899999773 257898766 399999999999999998
Q ss_pred HH
Q 042445 241 RH 242 (246)
Q Consensus 241 ~~ 242 (246)
+.
T Consensus 446 ~~ 447 (466)
T PRK07030 446 IA 447 (466)
T ss_pred HH
Confidence 75
No 287
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.46 E-value=8.8e-12 Score=103.53 Aligned_cols=140 Identities=16% Similarity=0.132 Sum_probs=99.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ ++-+|.||+..+.+ +++|.++|+++|+++|+|++++...... ++ .++.+ |+++|.
T Consensus 153 ~~~~~~i~~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~----pL-~lGAD---IV~hSa 221 (409)
T KOG0053|consen 153 KKILKAIKENTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQD----PL-PLGAD---IVVHSA 221 (409)
T ss_pred HHHHHhhccCceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccccC----hh-hcCCC---EEEEee
Confidence 3566777774 88999999999876 8999999999999999999999764321 11 22222 999999
Q ss_pred ccccccCCceEEEEEeeC-CCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSD-PNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCD 155 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (246)
+|.+++..--+|-+++.+ . ++..+++..+ ..+...+|+......+-+.. +.-+.++..++...+.+
T Consensus 222 TKyi~Ghsdvi~G~iv~n~~-------~~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt-----l~lRi~~~~ena~~~A~ 289 (409)
T KOG0053|consen 222 TKYIGGHSDVIGGSVVLNSE-------ELASRLKFLQEDLGWCEDPFDLFLLSRGLKT-----LHLRINKHSENALKIAL 289 (409)
T ss_pred eeeecCCcceeeeEEecCcH-------HHHHHHHHHHHHhcCCCCHHHHHHHhcCcch-----hhhhHHHHHHHHHHHHH
Confidence 999998775555554443 2 8888888774 34557888888777666663 44444455667667777
Q ss_pred HhhcCCCCc
Q 042445 156 RLKEIPCIT 164 (246)
Q Consensus 156 ~L~~~~~~~ 164 (246)
.|+..|.++
T Consensus 290 ~Le~~~~v~ 298 (409)
T KOG0053|consen 290 LLEAHPKVK 298 (409)
T ss_pred HhhhCCcee
Confidence 777655544
No 288
>PRK07036 hypothetical protein; Provisional
Probab=99.45 E-value=1.4e-11 Score=107.11 Aligned_cols=201 Identities=17% Similarity=0.178 Sum_probs=129.2
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPNG 98 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~~ 98 (246)
|. .++.+++++|.++|++||+++|.||++.++...|..+..-..++-... +-+++|.+ ..| +.+|.+++++
T Consensus 234 G~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PD---ivt~gK~l-~gG~~Pi~av~~~~--- 306 (466)
T PRK07036 234 GVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPD---IITFAKGL-TSGYQPLGAVIISE--- 306 (466)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCC---EEEEcccc-ccCccccEEEEEcH---
Confidence 44 567899999999999999999999999988766543322112222222 44678996 457 5999999988
Q ss_pred CcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh---cCCCCcccc
Q 042445 99 ILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK---EIPCITCPK 167 (246)
Q Consensus 99 ~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~---~~~~~~~~~ 167 (246)
++.+.+.. ....+++.||++.+++.+.|+...+. ...+..++.-+.+.+.|+ +.+.+.. +
T Consensus 307 -----~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~-v 377 (466)
T PRK07036 307 -----RLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMERE---GLCEHVREVGPYFEERLASLRELPLVGD-V 377 (466)
T ss_pred -----HHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhccCCCEEE-E
Confidence 88887752 12235578999999999988743221 222333333444444443 3432221 2
Q ss_pred CCCCceEEEEEeccccc-cCC-CC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445 168 KPEGSMFVMVKLNYSLL-EGI-NS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYD 240 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~-~~~-~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~ 240 (246)
. .-|.++.+++..... +.. .. ....+...+.++||.+.|.. +.+|++... ++++++++++++.++++
T Consensus 378 r-G~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-----~~~~l~Ppl~it~~~id~~~~~l~~al~ 451 (466)
T PRK07036 378 R-GDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE-----HLCVLSPPLIITRAQIDEIVAILRAAIE 451 (466)
T ss_pred E-eeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeecC-----CEEEEeCCCcCCHHHHHHHHHHHHHHHH
Confidence 2 336666777743210 000 01 12345566778999997632 568888664 99999999999999987
Q ss_pred HHh
Q 042445 241 RHA 243 (246)
Q Consensus 241 ~~~ 243 (246)
+..
T Consensus 452 ~~~ 454 (466)
T PRK07036 452 ETA 454 (466)
T ss_pred HHH
Confidence 764
No 289
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.45 E-value=8.7e-12 Score=108.24 Aligned_cols=205 Identities=15% Similarity=0.087 Sum_probs=128.2
Q ss_pred cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445 22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ 101 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~ 101 (246)
...++++++++.++|++||+++|.||+..++...|..+ ....++-... +-+++|.++ .|+.+|.+++.+
T Consensus 241 ~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~-a~~~~gv~PD---ivt~gK~l~-gG~Pi~av~~~~------ 309 (459)
T PRK06931 241 NPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMF-AFEHAGIEPD---IIVMSKAVG-GGLPLAVLGIKK------ 309 (459)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHH-HhhhcCCCCC---EEEeccccc-CCcceeeeeeHH------
Confidence 35678999999999999999999999999987666432 2222322222 455689965 579999888765
Q ss_pred hhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEe
Q 042445 102 DSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKL 179 (246)
Q Consensus 102 ~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~ 179 (246)
+ ++.+... ...+++.||++.+++.+.|+...+ ..+++.++.-...++.+.+..++.|.+.. +. .-|.++-+++
T Consensus 310 --~-~~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~-vr-G~Glm~giel 384 (459)
T PRK06931 310 --E-FDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGN-VR-GRGLMIGIEI 384 (459)
T ss_pred --H-HhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEe-Ee-cCceEEEEEE
Confidence 4 3444222 334558899999999998884332 22333332222223333332233543321 22 3466667777
Q ss_pred cccc-cc----CCC---ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHhh
Q 042445 180 NYSL-LE----GIN---SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 180 ~~~~-~~----~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~~ 244 (246)
.... .. ... +-...+...+.++||.+.++... .+.+|+.+.. ++++++++++++.+++++.-+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~--~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 385 VDERQPADAMGSYPADGELAAAIQKACFENGLLLERGGRN--GNVVRLLPPLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred ccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecCCC--CCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 4321 00 000 11234455667899999874322 5789988774 999999999999999987543
No 290
>PRK06917 hypothetical protein; Provisional
Probab=99.45 E-value=1.5e-11 Score=106.48 Aligned_cols=204 Identities=15% Similarity=0.140 Sum_probs=131.5
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCc-eEEEEEeeCCCCCcc
Q 042445 23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGL-RLGWLVTSDPNGILQ 101 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~-r~G~i~~~~~~~~~~ 101 (246)
.++.+++++|.++|++||+++|.||++.++...+..+.. ..++-... +-+++|.+ ..|+ .+|.+++.+
T Consensus 217 ~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~-~~~gv~PD---i~~~gK~l-~~G~~Pi~a~~~~~------ 285 (447)
T PRK06917 217 VPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAM-EHWGVEPD---IMTLGKGL-GAGYTPIAATVVSD------ 285 (447)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhH-HhcCCCCC---EEEeeehh-ccCCcceEEEEEcH------
Confidence 567899999999999999999999999987655543321 22222222 45679996 4564 899999988
Q ss_pred hhhHHHHHHHH-----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCc
Q 042445 102 DSGIVDSIKIF-----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGS 172 (246)
Q Consensus 102 ~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g 172 (246)
++.+.+... ...+++.||++.+++.+.|+...+. ...+..+++-+.+.+.|++ .+.+.. +. .-|
T Consensus 286 --~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~~-vr-G~G 358 (447)
T PRK06917 286 --RVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKH---NLPEKAAEKGEYLIKGLQKVQQQSTIIGD-VR-GKG 358 (447)
T ss_pred --HHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEE-Ee-ecc
Confidence 888877532 2235578999999999988843221 2233344444444444443 432221 22 336
Q ss_pred eEEEEEecccc-c-cCCC---ChHHHHHHHHHhcCeEEecCCC-cC--CCCeEEEEee--cChHHHHHHHHHHHHHHHHH
Q 042445 173 MFVMVKLNYSL-L-EGIN---SDMEFALKLAKEESVIVLPGIT-VG--LKDWLRITFA--VEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 173 ~~~~~~~~~~~-~-~~~~---~~~~~~~~ll~~~gi~v~pg~~-f~--~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~ 242 (246)
+++.+++.... . +... .....+...+.++||.+.|+.. .. ..+.+|++.. .+++++++++++|.+++++.
T Consensus 359 l~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 438 (447)
T PRK06917 359 LLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM 438 (447)
T ss_pred eEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 66666663211 0 0000 1134455667789999987522 11 1578999877 59999999999999999876
Q ss_pred hh
Q 042445 243 AE 244 (246)
Q Consensus 243 ~~ 244 (246)
.+
T Consensus 439 ~~ 440 (447)
T PRK06917 439 MQ 440 (447)
T ss_pred HH
Confidence 43
No 291
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.44 E-value=1.3e-11 Score=105.96 Aligned_cols=195 Identities=11% Similarity=0.025 Sum_probs=121.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccc-cCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGI-VPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~g~r~G~ 90 (246)
++++++|+||...+ +++|.++|+++|+++++|++++..... ..+... +--+++.|..|.++ .|| .|.
T Consensus 176 ~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~~----id~~~~---gvD~~~~s~hK~l~g~pG--~~l 243 (406)
T TIGR01814 176 LLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNVP----LDLHDW---GVDFACWCTYKYLNAGPG--AGA 243 (406)
T ss_pred EEeccccccceecC---HHHHHHHHHHcCCEEEEEcccccCCcc----cccccC---CCCEEEEcCccccCCCCC--eEE
Confidence 78889999999998 889999999999999999999864321 112222 23388899999864 556 333
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-h----------------------h-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHH
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-L----------------------N-ISSDPATFIQGAVPQILEKTEEEFFSKIIDIL 146 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~----------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 146 (246)
.+.++ . ...+... . . ...+++.....++..+++...+.-+++.+++.
T Consensus 244 ~v~~~--------~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~ 314 (406)
T TIGR01814 244 FVHEK--------H-AHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKS 314 (406)
T ss_pred EEehh--------h-hhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33333 1 1111110 0 0 01134555666666666643233467777778
Q ss_pred HHHHHHHHHHhhcC----CCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEE
Q 042445 147 RETADKCCDRLKEI----PCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRI 219 (246)
Q Consensus 147 ~~~~~~l~~~L~~~----~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRl 219 (246)
++..+.+.+.|+++ +++..+.+.+ -+..+.+.++ . +.. .+.+.|.++||.+... .++.+|+
T Consensus 315 ~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~------~~~-~~~~~L~~~gi~v~~~----~~~~iRi 382 (406)
T TIGR01814 315 LLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V------PGK-AVFQALIKRGVIGDKR----EPSVIRV 382 (406)
T ss_pred HHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C------CHH-HHHHHHHHCCEEEecc----CCCeEEE
Confidence 88888888888764 2454322211 1233444554 1 133 4455667889987532 2579999
Q ss_pred Ee-e-c-ChHHHHHHHHHHHHHH
Q 042445 220 TF-A-V-EPSALENGLGRMKAFY 239 (246)
Q Consensus 220 s~-~-~-~~~~l~~~~~~l~~~~ 239 (246)
|+ . . +.++++.+++.|++.+
T Consensus 383 S~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 383 APVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred echhccCCHHHHHHHHHHHHHHh
Confidence 98 4 3 8899999999998764
No 292
>PRK06148 hypothetical protein; Provisional
Probab=99.44 E-value=1.7e-11 Score=115.41 Aligned_cols=208 Identities=13% Similarity=0.073 Sum_probs=135.1
Q ss_pred CcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445 16 QVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 16 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~ 95 (246)
+++--...+++++++++.++|++||+++|.||++.++...|..+......+-. .-+-+++|.+ ..|+.+|.+++.+
T Consensus 794 ~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~---PDivt~gK~l-ggG~Plgav~~~~ 869 (1013)
T PRK06148 794 PSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVV---PDIVTMGKPI-GNGHPMGAVVTTR 869 (1013)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCC---cceeeecccc-cCCcceEEEEEcH
Confidence 33433346788999999999999999999999999987666422222222222 2255678996 4689999999998
Q ss_pred CCCCcchhhHHHHHHHH--hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccCC
Q 042445 96 PNGILQDSGIVDSIKIF--LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPKKP 169 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~ 169 (246)
++.+.+... ...+++.||++.+++.+.|+...++. ..+..++.-+.+.+.|+ +.+.+.. +.
T Consensus 870 --------ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~~~i~~-Vr- 936 (1013)
T PRK06148 870 --------EIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDED---LQRNALEIGNYLLAGLRELQDRFDIIGD-VR- 936 (1013)
T ss_pred --------HHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhCCCceE-Ee-
Confidence 888876532 23455889999999999988543222 22333333344444443 3432321 22
Q ss_pred CCceEEEEEeccccc-cCC-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 170 EGSMFVMVKLNYSLL-EGI-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 170 ~~g~~~~~~~~~~~~-~~~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
.-|+++-+++....- ... ......+...+.++||.+.+.... .+.+||.... +++++++++++|.+++++.
T Consensus 937 G~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~--~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 937 GMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPH--DNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred eeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccCCC--CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 336666677743210 000 012344556677899999774321 5889998774 9999999999999999764
No 293
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.43 E-value=1.3e-11 Score=106.44 Aligned_cols=199 Identities=15% Similarity=0.102 Sum_probs=124.1
Q ss_pred Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445 20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98 (246)
Q Consensus 20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~ 98 (246)
.|. ..+.+++++|.++|++||+++|.||++.++ ..+... ....++-... +-+++|.+ ..|+.+|.+++++
T Consensus 213 ~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~-a~~~~gv~PD---ivt~gK~l-ggG~Pi~av~~~~--- 283 (428)
T PRK12389 213 FGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGG-AQDLLGVEPD---LTALGKII-GGGLPIGAYGGRK--- 283 (428)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcch-hhHHhCCCCC---eeeechhh-cCCCceeEEeEHH---
Confidence 454 456789999999999999999999999988 333221 1111222212 44789996 5579999999988
Q ss_pred CcchhhHHHHHHH----HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCC
Q 042445 99 ILQDSGIVDSIKI----FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPE 170 (246)
Q Consensus 99 ~~~~~~~~~~l~~----~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~ 170 (246)
++++.+.. ....+++.||++.+++.+.|+.-.+. ...+..+++-+++.+.|++ .+.+..+.. .
T Consensus 284 -----~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r-~ 354 (428)
T PRK12389 284 -----DIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILEAAEKHGITITINR-L 354 (428)
T ss_pred -----HHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe-c
Confidence 88887752 12335588999999999988843221 1333344444444444443 432221112 2
Q ss_pred CceEEEEEeccccccC------C-CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 171 GSMFVMVKLNYSLLEG------I-NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 171 ~g~~~~~~~~~~~~~~------~-~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
+|++ -+.+....... . ......+...+.++||.+.|.. .+.+.+++..++++++++++++.+++++
T Consensus 355 ~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~----~~~~~~~l~~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 355 KGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSK----YEAWFLTTAHTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred CcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCC----CCCeeecCCCCHHHHHHHHHHHHHHHHh
Confidence 3443 34453211000 0 0113455667778999998853 2234566667999999999999999864
No 294
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.42 E-value=1.7e-11 Score=103.31 Aligned_cols=181 Identities=11% Similarity=0.094 Sum_probs=121.9
Q ss_pred cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445 22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ 101 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~ 101 (246)
...+.++++++.++|++||+++|+||++.++ ..|..+ ....++-..+ +-+++|.++. |+.+|.++.+.
T Consensus 178 ~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~-a~~~~gv~PD---iv~~gK~lgg-G~P~~a~~~~~------ 245 (364)
T PRK04013 178 VPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFL-AIEHYKVEPD---IVTMGKGIGN-GVPVSLTLTNF------ 245 (364)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchh-HHHhcCCCCC---EEEecccccC-CceeEEEEecc------
Confidence 3556789999999999999999999999988 555433 2222222223 4446899765 79999999887
Q ss_pred hhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEec
Q 042445 102 DSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLN 180 (246)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~ 180 (246)
++.. .....+++.||++.+++.+.|+...+ +.+++.++. + ..+.. +.+.. +. .-|+++-+++.
T Consensus 246 --~~~~---~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~-------l-~~l~~-~~v~~-vR-G~Gl~~gve~~ 309 (364)
T PRK04013 246 --DVER---GKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK-------F-IEIKG-ERVVT-TR-GRGLMIGIVLK 309 (364)
T ss_pred --cccC---CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH-------H-HHhcc-Cccee-ee-eCcEEEEEEeC
Confidence 4311 12334668999999999999885432 233333332 1 22322 22221 12 33677777775
Q ss_pred cccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 181 YSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 181 ~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
. ....+...+.++|+.+.+.. .+.+||.... +++++++++++|.+++++.
T Consensus 310 ~--------~~~~i~~~~~~~Gll~~~~g----~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 310 K--------PVGKYVEELQNRGYLVHTAG----QRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred C--------cHHHHHHHHHhCCcEEeeCC----CCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence 3 23344566778999987642 4789999874 9999999999999999764
No 295
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.42 E-value=1.2e-11 Score=107.40 Aligned_cols=201 Identities=13% Similarity=0.084 Sum_probs=129.5
Q ss_pred Ccc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeCCC
Q 042445 20 VGS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSDPN 97 (246)
Q Consensus 20 tG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~~~ 97 (246)
.|. .+++++++++.++|++||+++|.||++.++...|..+ ....++-... +-+++|.++ .| +.+|.+++++
T Consensus 237 gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~-a~~~~gv~PD---iv~~gK~l~-gG~~Pi~av~~~~-- 309 (460)
T PRK06916 237 GGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF-ACEHENVTPD---IMTAGKGLT-GGYLPIAITVTTD-- 309 (460)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhh-HHHhcCCCCC---eeeeehhhh-cCccccceeeecH--
Confidence 354 4688999999999999999999999999886665432 2222222222 345789964 57 6999999998
Q ss_pred CCcchhhHHHHHHH--------HhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc---CCCCccc
Q 042445 98 GILQDSGIVDSIKI--------FLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE---IPCITCP 166 (246)
Q Consensus 98 ~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~---~~~~~~~ 166 (246)
++.+.+.. .+..+++.||++..++.+.|+...+. ...+..+++-+.+.+.|++ .+.+..
T Consensus 310 ------ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~- 379 (460)
T PRK06916 310 ------EIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKT---NLIEQVARKTEYVATQLEDLFALKHVGD- 379 (460)
T ss_pred ------HHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCCeEE-
Confidence 88776642 12335577999999999888743221 2233444444455555544 332321
Q ss_pred cCCCCceEEEEEecccc-ccCC-CC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445 167 KKPEGSMFVMVKLNYSL-LEGI-NS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY 239 (246)
Q Consensus 167 ~~~~~g~~~~~~~~~~~-~~~~-~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~ 239 (246)
+. .-|.++-+.+.... .+.. .. ....+...+.++||.+.|.. +.+||... .+++++++++++|.+++
T Consensus 380 vr-G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-----~~l~~~Ppl~it~~~id~~~~~l~~~l 453 (460)
T PRK06916 380 IR-QLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPLG-----NTIVFMPPLASTIDELDEMLRILYKAI 453 (460)
T ss_pred ee-cCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEecC-----CEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 22 23555556664321 0000 00 12345566778999998732 57888866 49999999999999999
Q ss_pred HHHh
Q 042445 240 DRHA 243 (246)
Q Consensus 240 ~~~~ 243 (246)
++.-
T Consensus 454 ~~~~ 457 (460)
T PRK06916 454 SDVT 457 (460)
T ss_pred Hhhc
Confidence 7653
No 296
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.41 E-value=2.9e-11 Score=101.77 Aligned_cols=193 Identities=18% Similarity=0.179 Sum_probs=114.8
Q ss_pred cCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc--cccccCCceEEEEEee
Q 042445 17 VFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS--KRGIVPGLRLGWLVTS 94 (246)
Q Consensus 17 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~g~r~G~i~~~ 94 (246)
.||+|...+ +++|.++|+++|+++|+|++|+....... ..+..+ ..+.+.|++ |.++ +.+.|++++.
T Consensus 113 ~~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~~--~~~~~~----~d~~~~S~~~~K~~~--~~~gg~~~~~ 181 (352)
T cd00616 113 VHLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYKG--RKVGTF----GDAGAFSFHPTKNLT--TGEGGAVVTN 181 (352)
T ss_pred ECCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeECC--EEcccC----cceeEEcCCCCCCCc--ccCceEEEEC
Confidence 368998765 78888999999999999999985432211 011111 124566665 8863 3346888887
Q ss_pred CCCCCcchhhHHHHHHHHhhhc----------------CCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445 95 DPNGILQDSGIVDSIKIFLNIS----------------SDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK 158 (246)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 158 (246)
+. ++.+.++.....+ ..++++...++.. ....+++..++.+++.+.+.+.|+
T Consensus 182 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~-----~l~~~~~~~~~~~~~~~~~~~~L~ 249 (352)
T cd00616 182 DE-------ELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLA-----QLEKLDEIIARRREIAERYKELLA 249 (352)
T ss_pred CH-------HHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHhc
Confidence 53 6666665432211 1122222222221 223456677777889999999999
Q ss_pred cCCCCccccCCC----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC----------------C-----
Q 042445 159 EIPCITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG----------------L----- 213 (246)
Q Consensus 159 ~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~----------------~----- 213 (246)
+++++..+..+. ....+.+.++... + .+.+.+.+.|.++||.+....... .
T Consensus 250 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 325 (352)
T cd00616 250 DLPGIRLPDVPPGVKHSYHLYVIRLDPEA--G--ESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAED 325 (352)
T ss_pred CCCCccCCCCCCCCceeeEEEEEEECCcC--C--CCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHH
Confidence 888877433322 1233334444210 0 144555667788899765321110 0
Q ss_pred --CCeEEEEeec--ChHHHHHHHHHHH
Q 042445 214 --KDWLRITFAV--EPSALENGLGRMK 236 (246)
Q Consensus 214 --~~~iRls~~~--~~~~l~~~~~~l~ 236 (246)
.+.+|+++.. ++++++..++.|+
T Consensus 326 ~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 326 LAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred HHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 2689999884 8899998888763
No 297
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.41 E-value=3.3e-11 Score=105.37 Aligned_cols=218 Identities=12% Similarity=-0.011 Sum_probs=130.7
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.+.++ ++++| ||||.+ ..++++|.++|+++|+++++|.++.....+- . ....+ +--++++|.
T Consensus 199 e~L~~~i~~~t~~V~v~~P-n~tG~~--~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~--~-~~~~~---GaD~~~~~~ 269 (481)
T PRK04366 199 EALKAAVGEDTAALMLTNP-NTLGLF--ERNILEIAEIVHEAGGLLYYDGANLNAILGK--A-RPGDM---GFDVVHLNL 269 (481)
T ss_pred HHHHhhcccCCeEEEEeCC-CCcccc--chHHHHHHHHHHHcCCEEEEEecChhhhccc--C-Ccccc---CCCEEEEec
Confidence 3455555543 78899 699964 3579999999999999999999985322211 1 11112 223788888
Q ss_pred ccccccC----CceEEEEEeeCCCCCcchhhHHHHHHHH--------------------hhhcCCCCchHHHHHHHHHhh
Q 042445 78 SKRGIVP----GLRLGWLVTSDPNGILQDSGIVDSIKIF--------------------LNISSDPATFIQGAVPQILEK 133 (246)
Q Consensus 78 sK~~~~~----g~r~G~i~~~~~~~~~~~~~~~~~l~~~--------------------~~~~~~~~~~~q~~~~~~l~~ 133 (246)
.|.|++| |-.+|++.+.+ ++.+.+... +.-.++.+.....++..++..
T Consensus 270 hK~l~~P~g~Ggp~~G~l~~~~--------~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~ 341 (481)
T PRK04366 270 HKTFSTPHGGGGPGSGPVGVKE--------ELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS 341 (481)
T ss_pred hhhcCCCCCCCCCCeeeeeehh--------hhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH
Confidence 9987754 34578887776 555444200 000001122333444445554
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE--EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc
Q 042445 134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF--VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV 211 (246)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f 211 (246)
...+-+++..++..++.+++.+.|+++..+. + + +..+ +.+.++.-..++. +...+.+.|.++||.+. +..+
T Consensus 342 ~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~-~--~-~~~~~~~~~~~~~~~~~g~--~~~~v~~~L~~~Gi~~~-~~~~ 414 (481)
T PRK04366 342 LGAEGLREVSEDAVLNANYLKARLKDIYDLP-Y--D-RPCMHEFVLSGKKLKETGV--RTLDIAKRLLDYGFHPP-TIYF 414 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhCccc-C--C-CCeeEEEEEECccccccCC--CHHHHHHHHHHCCccCC-cccc
Confidence 3455677777777888889999998752332 1 1 1222 2222211011111 34455667778998755 2222
Q ss_pred C-C-CCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 212 G-L-KDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 212 ~-~-~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
. . .+.+|++++. +.++++..++.|.+..++..
T Consensus 415 p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~ 450 (481)
T PRK04366 415 PLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAK 450 (481)
T ss_pred ccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 2 6789999984 88999999999988877654
No 298
>PRK07046 aminotransferase; Validated
Probab=99.41 E-value=2.4e-11 Score=105.28 Aligned_cols=200 Identities=9% Similarity=0.070 Sum_probs=123.1
Q ss_pred cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445 22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ 101 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~ 101 (246)
...+.++++++.++|++||+++|.||+.+ +..+-........+.+ . +-+++|.++ .|+.+|.+++++
T Consensus 234 ~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~~~~~gv~P--D---i~t~gK~lg-gG~Pi~av~g~~------ 300 (453)
T PRK07046 234 VLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGYTRAHGLEP--D---FLVVGKPIA-GGVPCAVYGFSA------ 300 (453)
T ss_pred cCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcchhHHhCCCc--c---ceeehhhhc-CCCcceeeeehH------
Confidence 45566899999999999999999999987 4322112211112222 2 446899965 579999999988
Q ss_pred hhhHHHHHHHH----------hhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC
Q 042445 102 DSGIVDSIKIF----------LNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE 170 (246)
Q Consensus 102 ~~~~~~~l~~~----------~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 170 (246)
++++.+... ...+++.||++.+++.+.|+... ++.+++..+.-...++.+.+..++.+ +...+...
T Consensus 301 --~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~-~~~~v~g~ 377 (453)
T PRK07046 301 --ELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARHG-LPWHVTRV 377 (453)
T ss_pred --HHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEe
Confidence 888877531 22355789999999999887432 23344444443344444444444442 22112223
Q ss_pred CceEEEEEeccccccCC-----C-C--hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445 171 GSMFVMVKLNYSLLEGI-----N-S--DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 171 ~g~~~~~~~~~~~~~~~-----~-~--~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~ 242 (246)
|.+ +.+.+......+. . + -...+...+.++||.+.|. .+.++++...++++++++++++.+++++.
T Consensus 378 G~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-----~~~~~~~p~~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 378 GAR-VEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF-----HNMMLVCPATTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred CcE-EEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc-----cCcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 333 3444422110000 0 0 1123344566789998873 24678888789999999999999999765
Q ss_pred h
Q 042445 243 A 243 (246)
Q Consensus 243 ~ 243 (246)
.
T Consensus 452 ~ 452 (453)
T PRK07046 452 L 452 (453)
T ss_pred h
Confidence 3
No 299
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.41 E-value=3.9e-11 Score=101.81 Aligned_cols=206 Identities=20% Similarity=0.252 Sum_probs=116.3
Q ss_pred hhhhhhhccc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcccc
Q 042445 2 ELINQDITRE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSIS 78 (246)
Q Consensus 2 e~~~~~~~~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s 78 (246)
+.+++.++++ .+ .|+||+|...+ +++|.++|++||++||+|++|+.+. +.+....+ +. .+++||
T Consensus 110 ~~le~~i~~~tk~I-ip~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~---~~------~~~~fS 176 (376)
T TIGR02379 110 TLIESAITHRTKAI-VPVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKGRALGS---IG------HLGTFS 176 (376)
T ss_pred HHHHHhcCcCceEE-EEeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCCcccCC---CC------CEEEEe
Confidence 3455666654 22 37789999876 7799999999999999999999765 55432211 11 233444
Q ss_pred ----cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcC----------------------CCCchHHHHHHHHHh
Q 042445 79 ----KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISS----------------------DPATFIQGAVPQILE 132 (246)
Q Consensus 79 ----K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~~~q~~~~~~l~ 132 (246)
|.+ .+|.+.|+++++++ ++.++++..+..+. .++.+. +++ .+.
T Consensus 177 f~~~K~l-~~g~~gG~v~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~-Aa~--g~~ 245 (376)
T TIGR02379 177 FHETKNY-TSGGEGGALLINDQ-------AFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQ-AAY--LWA 245 (376)
T ss_pred CCCCCcC-cccCCceEEEECCH-------HHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHH-HHH--HHH
Confidence 885 56778899999864 78888876643211 111122 111 111
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhcCC--C-CccccCCCC---c-eEEEEEeccccccCCCChHHHHHHHHHhcCeEE
Q 042445 133 KTEEEFFSKIIDILRETADKCCDRLKEIP--C-ITCPKKPEG---S-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 205 (246)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~~~~~---g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 205 (246)
....+++..+.-++..+...+.|..++ + +.....+.+ . +++++.++... +.+.+.+.|+++||.+
T Consensus 246 --qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~r~~l~~~L~~~gI~~ 317 (376)
T TIGR02379 246 --QLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDED------DRNELIKYLKEQEIMA 317 (376)
T ss_pred --HHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCcC------CHHHHHHHHHHCCCCc
Confidence 122344444444444444555555432 1 111111222 1 23345554321 4566677888999988
Q ss_pred ecCCC----cC------C------------CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445 206 LPGIT----VG------L------------KDWLRITFAV--EPSALENGLGRMKAFY 239 (246)
Q Consensus 206 ~pg~~----f~------~------------~~~iRls~~~--~~~~l~~~~~~l~~~~ 239 (246)
.++.. +. . .+.+.+-+.. ++++++..++.|++++
T Consensus 318 ~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 318 VFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred cccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 74321 10 0 2345454443 7888888888888764
No 300
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.41 E-value=1.3e-11 Score=106.21 Aligned_cols=200 Identities=12% Similarity=0.021 Sum_probs=124.2
Q ss_pred cc-CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCC
Q 042445 21 GS-GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGI 99 (246)
Q Consensus 21 G~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~ 99 (246)
|. ..+++++++|.++|++||+++|.||++.++ ..+... ....++-...+ -+++|.++ .|+.+|++++++
T Consensus 215 G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~g-a~~~~gv~PDi---~~~gK~lg-gG~p~~av~~~~---- 284 (433)
T PRK00615 215 GVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGG-AAAIYHVKPDI---TVYGKILG-GGLPAAAVVAHK---- 284 (433)
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhH-HHHhcCCCCCe---EEEccccc-CCcceeeeeecH----
Confidence 54 446789999999999999999999999877 344222 22222222223 35899975 568899999998
Q ss_pred cchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh----hcCCCCccccCCCC
Q 042445 100 LQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL----KEIPCITCPKKPEG 171 (246)
Q Consensus 100 ~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L----~~~~~~~~~~~~~~ 171 (246)
++++.+... ...+++.+|+..+++.+.|+...+ +...+.++++-+.+.+.| ++. ++. +.....
T Consensus 285 ----~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~---~~~~~~~~~~g~~l~~~l~~~~~~~-g~~-v~~~r~ 355 (433)
T PRK00615 285 ----SIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE---QGFYTQLSTLEQNFLSPIEEMIRSQ-GFP-VSLVRY 355 (433)
T ss_pred ----HHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEee
Confidence 888887532 223446799999999888874321 122333444444443333 332 222 111124
Q ss_pred ceEEEEEeccccc---cCC----CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 172 SMFVMVKLNYSLL---EGI----NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 172 g~~~~~~~~~~~~---~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
|.++.+.+..... ... ......+...+.++||.+.|.... .++ +|...+++++++.++.+.+++++..
T Consensus 356 G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---~~~-ls~~ht~~did~~~~a~~~~~~~~~ 430 (433)
T PRK00615 356 GSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFE---ASF-LSSAHSMENLDYAQNVLIDSLEKVF 430 (433)
T ss_pred ceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCcccc---ccc-eecCCCHHHHHHHHHHHHHHHHHHh
Confidence 6666666753210 000 011234566677899998875421 112 5666699999999999999998764
No 301
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.40 E-value=2.6e-11 Score=104.71 Aligned_cols=187 Identities=13% Similarity=0.164 Sum_probs=114.4
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445 23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD 102 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~ 102 (246)
..+++++++|.++|++||+++|+||+++++...|..+ ....++-...++ +++|.+ ..+ |++ +.+
T Consensus 235 ~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~-a~~~~gv~PDi~---~~gK~~-~~~---g~~-~~~------- 298 (431)
T TIGR03251 235 HFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAW-AYQQLGVQPDIV---AFGKKT-QVC---GIM-AGR------- 298 (431)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHH-HHHhcCCCCCEE---EecccC-ccc---eEE-ecc-------
Confidence 4677999999999999999999999999887765432 222222222333 478885 222 444 433
Q ss_pred hhHHHHHH------HHhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEE
Q 042445 103 SGIVDSIK------IFLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFV 175 (246)
Q Consensus 103 ~~~~~~l~------~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~ 175 (246)
++.+... .....+++.|+++..++.+.|+...+ ..+++.++.-+..++.+.+..++.+++...+... |.++
T Consensus 299 -~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~-G~~~ 376 (431)
T TIGR03251 299 -RVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGR-GLMC 376 (431)
T ss_pred -hHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceeccccc-ceeE
Confidence 3211111 11223457899999999998885332 2334444444444444444334454232222333 6666
Q ss_pred EEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHH
Q 042445 176 MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKA 237 (246)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~ 237 (246)
.++++... ....+...+.++||.+.|.. .+.+||++.. ++++++++++.|.+
T Consensus 377 ~i~~~~~~------~~~~~~~~l~~~Gvl~~~~g----~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 377 AFDLPSTA------DRDEVIRQLYREGVLLLGCG----ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred EEEeCCHH------HHHHHHHHHHhCCeEEecCC----CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 67775431 34445566778999998753 3678988774 89999999998875
No 302
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.40 E-value=6.9e-11 Score=101.80 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=99.2
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.+++.++++ ++..+.||+|.+.+ +++|.++|+++|+++|+|.+++..... .++ .++ --+++.|+
T Consensus 146 e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~~----~p~-~~G---aDivv~S~ 214 (437)
T PRK05613 146 ESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAALV----RPL-ELG---ADVVVASL 214 (437)
T ss_pred HHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCcccccc----ChH-HhC---CCEEEeec
Confidence 4556666654 66688999998877 889999999999999999998753321 111 122 23889999
Q ss_pred ccccccCCceEEEEEeeCCC-C---------C------------------cchhhHHHHHH--HHhhhcCCCCchHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPN-G---------I------------------LQDSGIVDSIK--IFLNISSDPATFIQGAV 127 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~-~---------~------------------~~~~~~~~~l~--~~~~~~~~~~~~~q~~~ 127 (246)
+|.++..|--+|.+++.+.. . . .....+..+.+ .....+..++|...+.+
T Consensus 215 ~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~ 294 (437)
T PRK05613 215 TKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVT 294 (437)
T ss_pred cceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99998887666666553210 0 0 00000111111 12334557788888888
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 042445 128 PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPK 167 (246)
Q Consensus 128 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 167 (246)
.+-|+. +..+.++..+++..+.+.|+++|.+..+.
T Consensus 295 ~rgl~T-----L~lR~~~~~~nA~~lA~~L~~hp~V~~V~ 329 (437)
T PRK05613 295 AQGLDT-----LSLRLERHNENAIKVAEFLNNHEKVAKVN 329 (437)
T ss_pred HcccCc-----HHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 777774 66777777899999999999988765433
No 303
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.40 E-value=3.7e-11 Score=104.50 Aligned_cols=198 Identities=13% Similarity=0.076 Sum_probs=128.1
Q ss_pred CccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-ccCCceEEEEEeeCCCC
Q 042445 20 VGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-IVPGLRLGWLVTSDPNG 98 (246)
Q Consensus 20 tG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~g~r~G~i~~~~~~~ 98 (246)
+|...+ +++|.++|+++|+++++|+++............. ++. --++++|++|.+ |..| |++++++
T Consensus 194 ~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p--~~~--~Div~~t~hK~L~GP~G---g~I~~~~--- 260 (475)
T PLN03226 194 YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASP--FEY--CDVVTTTTHKSLRGPRG---GMIFFRK--- 260 (475)
T ss_pred CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCC--CCC--CeEEEecCcccccCCCc---eEEEEch---
Confidence 455544 7789999999999999999999766544322111 111 228899999997 4555 8888866
Q ss_pred CcchhhHH-----------H---HHHHHh--hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042445 99 ILQDSGIV-----------D---SIKIFL--NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC 162 (246)
Q Consensus 99 ~~~~~~~~-----------~---~l~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 162 (246)
+.. + .+.... .+.+++++...+++..++........++.+++..++.+.+.+.|.+. |
T Consensus 261 -----~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~-G 334 (475)
T PLN03226 261 -----GPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSK-G 334 (475)
T ss_pred -----hhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 322 2 122221 12324455555555556664322334667888899999999999885 7
Q ss_pred CccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC-----CCCeEEEEee------cChHHHHHH
Q 042445 163 ITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-----LKDWLRITFA------VEPSALENG 231 (246)
Q Consensus 163 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-----~~~~iRls~~------~~~~~l~~~ 231 (246)
+..+........+++++....+ +...+...|.+.||.+..+.-++ .+..+|++.. .++++++++
T Consensus 335 ~~l~~~~t~~hi~lv~~~~~gi-----~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~i 409 (475)
T PLN03226 335 YKLVTGGTDNHLVLWDLRPLGL-----TGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKV 409 (475)
T ss_pred CEEEcCCCCCCEEEEEccCCCC-----CHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHH
Confidence 7643322335677777743321 44556778889999997654222 1677998433 378899999
Q ss_pred HHHHHHHHHH
Q 042445 232 LGRMKAFYDR 241 (246)
Q Consensus 232 ~~~l~~~~~~ 241 (246)
.+.|.++++.
T Consensus 410 a~~i~~~~~~ 419 (475)
T PLN03226 410 AEFLHRAVTI 419 (475)
T ss_pred HHHHHHHHHH
Confidence 9999998873
No 304
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=99.40 E-value=1.5e-11 Score=97.01 Aligned_cols=202 Identities=12% Similarity=0.111 Sum_probs=127.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccC--CcccCCCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG--HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
+-|.+||-.|.++|.+++.++.++|++|++.+..|.+-- ...-.+ .++..+...-..+.+ .+||.+|+| +|
T Consensus 160 lENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasg---V~vk~i~~~fDSVsi-CLSKglgAP---VG 232 (384)
T KOG1368|consen 160 LENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASG---VPVKKICSAFDSVSI-CLSKGLGAP---VG 232 (384)
T ss_pred eeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcC---CCHHHHHHhhhhhhh-hhhccCCCC---cc
Confidence 445554555599999999999999999999999998532 222112 122222221122333 489998655 68
Q ss_pred EEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKK 168 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 168 (246)
.++..+. +++++.+.. ...+.++-..+..++++..+ .++... ..+.-.+++..+.+.++..+.+..-++
T Consensus 233 SViVG~k-------~FI~kA~~~RKalGGGmRQsGvLaaaaLva--l~~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~ 302 (384)
T KOG1368|consen 233 SVIVGSK-------DFIDKARHFRKALGGGMRQSGVLAAAALVA--LDENVP-LLRADHKRAKELAEYINTPEEIRVEVP 302 (384)
T ss_pred cEEEccH-------HHHHHHHHHHHHhcCchhHHHHHHHHHHHH--hhcchH-HHHHHHHHHHHHHHHhccccceeeecc
Confidence 8766553 888887765 33444444444444444443 111122 222334566667777776655663233
Q ss_pred CCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445 169 PEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFY 239 (246)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~ 239 (246)
.-..+++.+.+....+ +.+.+.+.++++||.+.++. ...+|+.+.. ++++++.....+.+.+
T Consensus 303 a~etNiv~~~l~q~~~-----~~~~l~~~~~k~gi~lm~~~----s~r~Rivlh~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 303 AVETNIVNMVLCQARL-----TAEELCKFLEKNGILLMGGA----SRRIRIVLHHQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred hhhcceeeeecccccC-----CHHHHHHHHHHCCeEEeecc----ccceEEEEEEecCHHHHHHHHHHHHHHH
Confidence 3557777776765543 55666677889999999877 4568999885 9999999999885444
No 305
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.37 E-value=2.7e-11 Score=104.58 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=116.5
Q ss_pred ccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCc
Q 042445 21 GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGIL 100 (246)
Q Consensus 21 G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~ 100 (246)
|...+.+++++|.++|++||+++|+||++.++.+.+........+.+ -+.+++|.++ .|+.+|++++++
T Consensus 198 g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~P-----Di~t~gK~lg-gG~p~~av~~~~----- 266 (431)
T PRK06209 198 ADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVP-----DLSCFGKALG-NGFAVSALAGKR----- 266 (431)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCc-----ceeeehhhhc-CCcccEEEEEHH-----
Confidence 44677899999999999999999999999877543211111112222 2577899976 468899999988
Q ss_pred chhhHHHH--HHH---H----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCcccc
Q 042445 101 QDSGIVDS--IKI---F----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPK 167 (246)
Q Consensus 101 ~~~~~~~~--l~~---~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~ 167 (246)
++++. +.. . ...+++.||+..+++.+.|+...+. ...+.++++-+.+.+.|+ +++ +...+
T Consensus 267 ---~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~~~~~-~~~~v 339 (431)
T PRK06209 267 ---EYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDE---DVIERLHEQGAKLAAGVNEAAAEHG-LQDHV 339 (431)
T ss_pred ---HHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHHHHhCC-CCeEE
Confidence 77775 311 1 1234467788888888887743221 123344444444444443 343 22112
Q ss_pred CCCCceEEEEEeccccccCCCCh--HHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSD--MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
...|.+..+.-+....- +.... ...+...+.++||.+.| ++++...++++++++++.+.+++++..
T Consensus 340 r~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gi~~p~---------l~is~~ht~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 340 RVSGRPCCLTYSTLDGN-GQPSQAFRTLFLQETIRRGVLMPS---------LVVSYAHGDADIERTIDAVHGALGVYR 407 (431)
T ss_pred EeecceEEEEEecCCcc-cCCcHHHHHHHHHHHHHCCccccc---------ccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 22333333322211100 00011 12344557788997622 356655699999999999999998763
No 306
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.37 E-value=8.1e-11 Score=100.04 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=120.4
Q ss_pred hhhhhhhccc---cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE---FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~---~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ ++ +.||+|...+ +++|.++|+++|++||+|++|+.+. +++.+. ..++. +.+.||
T Consensus 110 ~~le~~i~~~tk~i~--~~~~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~---g~~~~----~~~~Sf 177 (375)
T PRK11706 110 TLIEAAITPKTRAIV--PVHYAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKGRAL---GTIGH----IGCFSF 177 (375)
T ss_pred HHHHHhcCCCCeEEE--EeCCCCCccC---HHHHHHHHHHcCCEEEEECccccccccCCeee---ecCcC----EEEEeC
Confidence 4556666554 22 3468998755 7899999999999999999999776 443322 12211 223333
Q ss_pred c--cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc------------------CCCCchHHHHHHHHHhhchHH
Q 042445 78 S--KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS------------------SDPATFIQGAVPQILEKTEEE 137 (246)
Q Consensus 78 s--K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~~q~~~~~~l~~~~~~ 137 (246)
. |.++ +|.+.++++.++ ++.++++.....+ .+.|...+...+++... ...
T Consensus 178 ~~~K~l~-~g~gG~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~-ql~ 247 (375)
T PRK11706 178 HETKNYT-AGEGGALLINDP--------ALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWA-QLE 247 (375)
T ss_pred CCCcccc-ccCCeEEEECCH--------HHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHH-HHH
Confidence 3 9974 477767776665 7887776654211 12333323333333221 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC---CCccccCCCC----ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC
Q 042445 138 FFSKIIDILRETADKCCDRLKEIP---CITCPKKPEG----SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT 210 (246)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~ 210 (246)
.+++..+.-+++.+.+.+.|++++ ++.....+.+ .+++++.++... +.+.+.+.|.++||.+.....
T Consensus 248 ~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~r~~l~~~L~~~gI~~~~~~~ 321 (375)
T PRK11706 248 AADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDLE------DRSALINFLKEAGIMAVFHYI 321 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCcC------CHHHHHHHHHHCCCCccccCC
Confidence 456666666677777777777664 2331112222 335566565321 456667778899998753321
Q ss_pred -----------------cCC-----CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445 211 -----------------VGL-----KDWLRITFAV--EPSALENGLGRMKAFY 239 (246)
Q Consensus 211 -----------------f~~-----~~~iRls~~~--~~~~l~~~~~~l~~~~ 239 (246)
|.. .+.+-+-+.. ++++++..++.|++++
T Consensus 322 p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 322 PLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred ccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 000 2444444442 7888888888887764
No 307
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.36 E-value=6.7e-11 Score=99.00 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=132.7
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445 23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD 102 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~ 102 (246)
...+++++.|.++|+++|+++|.||+..+|...-.+......+.++ +.+++|+ .+.|+.+|.+.+..
T Consensus 217 ~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PD-----lttlGKi-IGGGlP~ga~gGr~------- 283 (432)
T COG0001 217 PPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPD-----LTTLGKI-IGGGLPIGAFGGRA------- 283 (432)
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcc-----hhhhhhh-hcCCcceeeeccHH-------
Confidence 4566899999999999999999999999888663344444445444 7789999 68999999999998
Q ss_pred hhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccCCCCceE
Q 042445 103 SGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPCITCPKKPEGSMF 174 (246)
Q Consensus 103 ~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~g~~ 174 (246)
++++.+... ..-+++.||++..|..+.|+.-... +...+++.+..+.|.+.|+ +. ++...+...+++|
T Consensus 284 -eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~--~~~y~~l~~~~~~L~~gl~~~~~~~-g~~~~v~~~gsm~ 359 (432)
T COG0001 284 -EIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTE--EGVYERLDALGERLAEGLRAAAERH-GIPLTVNRVGSMF 359 (432)
T ss_pred -HHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeecceE
Confidence 888866543 2235588999999999888842210 0134444444555555444 33 4443344455665
Q ss_pred EEEEecccccc--------CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHhh
Q 042445 175 VMVKLNYSLLE--------GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 175 ~~~~~~~~~~~--------~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~ 244 (246)
-+. +...... +...-.++.. .+.++||++.|+.+ ..++ +|...+++++++.++.+.+++++..+
T Consensus 360 ~i~-F~~~~~~n~~da~~sd~~~~~~~~~-~~l~~GV~l~ps~~---ea~f-lS~ahte~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 360 GIF-FTEEGVRNYADAKRSDVERFAKFFH-HLLNRGVYLAPSQF---EAGF-LSTAHTEEDIDRTLEAADEAFKELAG 431 (432)
T ss_pred EEE-ecCCCCCCHHHHHhhchHHHHHHHH-HHHhCCcccCCccc---ccee-eecccCHHHHHHHHHHHHHHHHHhhc
Confidence 554 4321100 0000123344 67789999988642 2222 67778999999999999999887653
No 308
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.35 E-value=6.6e-11 Score=108.25 Aligned_cols=202 Identities=11% Similarity=0.079 Sum_probs=130.9
Q ss_pred CCCccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEEEEeeC
Q 042445 18 FHVGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGWLVTSD 95 (246)
Q Consensus 18 NPtG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~i~~~~ 95 (246)
.-.|.. ++++++++|.++|++||+++|.||++.+|...|..+ ....++-. --+-+++|.+ ..| +.+|.+++++
T Consensus 596 GaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~f-a~e~~gv~---PDIi~~gKgL-tgG~~Plaa~l~~~ 670 (817)
T PLN02974 596 GAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVES-AWELLGCK---PDIACYAKLL-TGGLVPLAATLATE 670 (817)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchh-hHHhcCCC---CCEEeecccc-cCCCCccEEEEEcH
Confidence 334665 567899999999999999999999999998877544 22223322 2255578995 567 6999999998
Q ss_pred CCCCcchhhHHHHHHH-------HhhhcCCCCchHHHHHHHHHhhchH-HHHHHHHHHHHHHHH----HHHHHhhcCCCC
Q 042445 96 PNGILQDSGIVDSIKI-------FLNISSDPATFIQGAVPQILEKTEE-EFFSKIIDILRETAD----KCCDRLKEIPCI 163 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~----~l~~~L~~~~~~ 163 (246)
++.+.+.. .+..+++.||++.+++.+.|+...+ .......+.-.+..+ .+.+.|.++|.+
T Consensus 671 --------~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V 742 (817)
T PLN02974 671 --------EVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPNV 742 (817)
T ss_pred --------HHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 88887742 1345668999999999998885432 222222233233333 333444455544
Q ss_pred ccccCCCCceEEEEEeccccc-cCC-CChHHHHHHHHH-hcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445 164 TCPKKPEGSMFVMVKLNYSLL-EGI-NSDMEFALKLAK-EESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF 238 (246)
Q Consensus 164 ~~~~~~~~g~~~~~~~~~~~~-~~~-~~~~~~~~~ll~-~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~ 238 (246)
.. +. .-|.++-+++....- .+. ......+.+.+. ++||.++|.. +.+|+.... ++++++++++.|.+.
T Consensus 743 ~~-VR-g~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G-----nvi~l~pP~~i~~e~l~~~~~~l~~~ 815 (817)
T PLN02974 743 ER-VV-SLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG-----NVVYLMCGPTTSPETCTRLLRKVYRR 815 (817)
T ss_pred eE-EE-eeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC-----CEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 32 22 336777777754210 010 012234455566 8999998842 677876553 899999999999876
Q ss_pred H
Q 042445 239 Y 239 (246)
Q Consensus 239 ~ 239 (246)
+
T Consensus 816 ~ 816 (817)
T PLN02974 816 L 816 (817)
T ss_pred h
Confidence 5
No 309
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.35 E-value=2.2e-11 Score=105.27 Aligned_cols=191 Identities=13% Similarity=0.079 Sum_probs=114.2
Q ss_pred CccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445 20 VGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98 (246)
Q Consensus 20 tG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~ 98 (246)
.|... +.+++++|.++|++||+++|.||++.++...|..+ ....++-. ...-+.+++|.++..| ++++.+
T Consensus 264 ~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~f-a~e~~gv~-~~PDi~t~gK~lg~gG----~~~~~~--- 334 (464)
T TIGR00699 264 GGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFW-AHEHWNLD-DPPDMVTFSKKFQTAG----YFFHDP--- 334 (464)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchh-HHHhcCCC-CCCCEEEehhhhccCC----ccccch---
Confidence 35554 78999999999999999999999999887655432 22222211 0022466789975445 333332
Q ss_pred CcchhhHHHHHH-HHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh----cCCC-CccccC-CCC
Q 042445 99 ILQDSGIVDSIK-IFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK----EIPC-ITCPKK-PEG 171 (246)
Q Consensus 99 ~~~~~~~~~~l~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~-~~~~~~-~~~ 171 (246)
. +.... .....+++.||++.+++.+.|+...+. ...+..++.-+.+.+.|+ ++|. +.. +. ..-
T Consensus 335 -----~-~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~-vRg~G~ 404 (464)
T TIGR00699 335 -----A-FRPNKPYRQFNTWMGDPSRALILREIIQEIKRK---DLLENVAHVGDYLYTGLEDLQKKYPEFIQN-LRGKGR 404 (464)
T ss_pred -----h-ccCCCCcccccCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceee-ecccCe
Confidence 2 11111 113345578999999998888743221 122222233333333333 3442 221 22 123
Q ss_pred ceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFY 239 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~ 239 (246)
|+++-++++... ....+.+.+.++||++.+.. .+.+||+... +++++++++++|.+++
T Consensus 405 Glm~gie~~~~~------~~~~i~~~~~~~Gvl~~~~g----~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 405 GTFIAWDTPDEA------KRDKLLKKARNNGVNIGGCG----VKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred EEEEEEecCCHH------HHHHHHHHHHHCCcEEecCC----CCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 666666664321 24455666778999997642 4789999874 9999999999998763
No 310
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.34 E-value=2.2e-10 Score=97.54 Aligned_cols=215 Identities=13% Similarity=0.146 Sum_probs=119.4
Q ss_pred hhhhhhhccc--cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCc-ccCCCCCccccccCCcccEEEEcccc
Q 042445 2 ELINQDITRE--FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHL-AFGNTPFVSMGVFGSIVPLLTLGSIS 78 (246)
Q Consensus 2 e~~~~~~~~~--~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~i~~~s~s 78 (246)
+.+++.++++ .+ .|+||+|...+ +++|.++|+++|+++|+|++|+.. .+.+... +.... .+.||+
T Consensus 112 ~~l~~~i~~~tkav-~~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~------g~~g~--~~~Sf~ 179 (379)
T PRK11658 112 EAIEAAITPRTKAI-IPVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKGRHI------GARGT--AIFSFH 179 (379)
T ss_pred HHHHHhcccCCeEE-EEeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECCeec------CCCCC--EEEeCC
Confidence 3455666554 22 27789999765 788999999999999999999843 3433211 22111 355666
Q ss_pred cccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCch--------------------HHHHHHHHHhhchHHH
Q 042445 79 KRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSDPATF--------------------IQGAVPQILEKTEEEF 138 (246)
Q Consensus 79 K~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------------------~q~~~~~~l~~~~~~~ 138 (246)
+...+++.+.|++++++. ++.++++.....+...++. ....+.+++.......
T Consensus 180 ~~K~l~~g~GG~v~~~~~-------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~ 252 (379)
T PRK11658 180 AIKNITCAEGGLVVTDDD-------ELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAK 252 (379)
T ss_pred CCCcCcccCceEEEECCH-------HHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHH
Confidence 444456667898888653 7777776543211000000 0011112222112345
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccccCCC----CceEE-EEEeccccccCCCChHHHHHHHHHhcCeEEecCCC---
Q 042445 139 FSKIIDILRETADKCCDRLKEIPCITCPKKPE----GSMFV-MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT--- 210 (246)
Q Consensus 139 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~--- 210 (246)
+++..+.-++..+.+.+.|++++... +..|. ..+++ .+.++... .+. +.+.+.+.|+++||.+.+...
T Consensus 253 l~~~~~~r~~~a~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~--~r~~~~~~L~~~gI~~~~~~~~~~ 328 (379)
T PRK11658 253 LEALNARRREIAARYLQALADLPFQP-LSLPAWPHQHAWHLFIIRVDEER-CGI--SRDALMEALKERGIGTGLHFRAAH 328 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcc-CcCCCCCCceeEEEEEEEECCcc-ccC--CHHHHHHHHHHCCCCCcccCcCcc
Confidence 66666666777777788887775332 22222 12222 23443211 011 345566677899987663210
Q ss_pred -------------cCC-----CCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445 211 -------------VGL-----KDWLRITFA--VEPSALENGLGRMKAFY 239 (246)
Q Consensus 211 -------------f~~-----~~~iRls~~--~~~~~l~~~~~~l~~~~ 239 (246)
|.. .+.+.+-+. .++++++..++.|++++
T Consensus 329 ~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 329 TQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred cChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 001 244444444 27888888888888765
No 311
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.33 E-value=7.5e-11 Score=95.86 Aligned_cols=194 Identities=15% Similarity=0.153 Sum_probs=117.9
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEcccc--CCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVY--GHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~ 95 (246)
|-.|+++|.+++++|.++|+++|+.+..|-+= ......+ .+...+.....+++++ +||..+.|+ |.++..+
T Consensus 141 te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg---~~~~~~~~~~D~v~~~-~tK~g~~~~---gAiv~gn 213 (342)
T COG2008 141 TEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG---VALKTIKSYVDSVSFC-LTKGGGAPV---GAIVFGN 213 (342)
T ss_pred CCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC---CCHHHHHhhCCEEEEe-cccCCccee---eeEEEcC
Confidence 56699999999999999999999999999852 2222222 2333333333455554 899965565 9988877
Q ss_pred CCCCcchhhHHHHHHHHhh-hcCCC--CchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc
Q 042445 96 PNGILQDSGIVDSIKIFLN-ISSDP--ATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS 172 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~-~~~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 172 (246)
. ++++.++.... .+... +.+.-+....+|++ +-|.. ....-.+.++.|.+.|+..+|+. ...|...
T Consensus 214 ~-------~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~--~~~~~-~~~Han~mA~~La~~~~~~~G~~-~~~~~~t 282 (342)
T COG2008 214 R-------DFAKRARRWRKRAGGLMRKARFLAAQGLYALED--DVWRL-AADHANAMAARLAEGLEAKPGVK-LAFPVET 282 (342)
T ss_pred H-------HHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhc--cHHHH-HHHHHHHHHHHHHHhhhhcCCce-eccCCcc
Confidence 4 88887776533 22222 33333333334442 11221 12222344888888888777888 4566778
Q ss_pred eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee--cChHHHHHHHHHHHHHH
Q 042445 173 MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA--VEPSALENGLGRMKAFY 239 (246)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~ 239 (246)
+.++++++.... +.......+...|+.+.++. ..+||..+ .+++++++++..+++++
T Consensus 283 N~vf~~l~~~~i-----~~l~~~~~~~~~~~~~~~~~-----~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 283 NMVFVRLPESAI-----EALRLAGALFYRGVLIGAHG-----EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred cEEEEECChHHH-----HHHHhhchhheeeeeccCCC-----ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 888888875321 11111222223333332211 46899877 48999998888887764
No 312
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.33 E-value=1e-10 Score=101.65 Aligned_cols=200 Identities=14% Similarity=0.075 Sum_probs=121.6
Q ss_pred CccC-CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445 20 VGSG-FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98 (246)
Q Consensus 20 tG~~-~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~ 98 (246)
.|.+ .+++++++|.++|++||+++|.||++.++ ..+... ....++-... +.+++|.++ .|+.+|.+++++
T Consensus 259 ~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~g-a~~~~gv~PD---i~t~gK~lg-gG~Pigav~g~~--- 329 (474)
T PLN02482 259 SGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGG-AQEYFGITPD---LTTLGKVIG-GGLPVGAYGGRR--- 329 (474)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcch-HhHHhCCCCC---EEEecchhh-CCCceEEEEEcH---
Confidence 3544 45789999999999999999999999877 443322 2222222212 457899975 679999998888
Q ss_pred CcchhhHHHHHHHH----hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC---CCccccCCCC
Q 042445 99 ILQDSGIVDSIKIF----LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIP---CITCPKKPEG 171 (246)
Q Consensus 99 ~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~ 171 (246)
++++.+... ...+++.||++..++.+.|+...+ ....+.++++-+.+.+.|+++. ++......-+
T Consensus 330 -----ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~ 401 (474)
T PLN02482 330 -----EIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ---PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYIS 401 (474)
T ss_pred -----HHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccc
Confidence 888877532 223446799999998888874321 2344445555555555554421 2221111223
Q ss_pred ceEEEEEeccccc---cCC--CC--hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLL---EGI--NS--DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 172 g~~~~~~~~~~~~---~~~--~~--~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
|++. +.+..... ++. .+ ....+...+.++||.+.|... . .+. +++..++++++++++++.+++++
T Consensus 402 g~~g-i~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~-~-~~~--psl~ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 402 GMFG-FFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQF-E-AGF--TSLAHTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred eEEE-EEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCC-C-CCc--CCCCCCHHHHHHHHHHHHHHHHh
Confidence 4432 22322110 000 01 123445567789999987432 1 111 55666999999999999999865
No 313
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=99.32 E-value=3e-10 Score=92.91 Aligned_cols=193 Identities=17% Similarity=0.110 Sum_probs=136.0
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445 23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD 102 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~ 102 (246)
.+++..+++..++|+++|.++|.||+.++|...| .+..++..+-+.-+-|++|.. ..|+.+|.+++++
T Consensus 229 ~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG----~~wgfe~h~v~PDIvTmAKgi-GnG~Pl~AVvtt~------- 296 (442)
T KOG1404|consen 229 ELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG----HMWGFESHGVVPDIVTMAKGI-GNGFPLGAVVTTP------- 296 (442)
T ss_pred cCCchHHHHHHHHHHHcCCEEEehhhhhcccccc----ccccccccCCCccHHHHHhhc-cCCCcceeeecCH-------
Confidence 4566899999999999999999999999998776 445677777778899999994 6779999999998
Q ss_pred hhHHHHHHHHh--hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc----CCCCccccCCCCceEEE
Q 042445 103 SGIVDSIKIFL--NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE----IPCITCPKKPEGSMFVM 176 (246)
Q Consensus 103 ~~~~~~l~~~~--~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~g~~~~ 176 (246)
++.+-+.+.. ..+++.+|++.++..+.|+-..++.+.+..+.. -.++.+.|.+ .|-+.. ...-|+++-
T Consensus 297 -EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~v---G~yl~~~l~~l~d~h~iIGd--VRG~GLm~G 370 (442)
T KOG1404|consen 297 -EIADVLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEV---GSYLLEKLAALKDKHPIIGD--VRGRGLMLG 370 (442)
T ss_pred -HHHHHHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHhhcCCceee--cccceeEEE
Confidence 8888887664 346689999999999999855455554444433 3333444433 332221 123377777
Q ss_pred EEeccccccCCC---ChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHH
Q 042445 177 VKLNYSLLEGIN---SDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRM 235 (246)
Q Consensus 177 ~~~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l 235 (246)
+++-....+..+ ..-..+.+-+++.|+.|.-|..+ .+.+|++... +.++++-+++..
T Consensus 371 vE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~--G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 371 VELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIH--GNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred EEEecccCCCCCcchHHHHHHHHHHHHhCeeeeccccc--ceEEEecCCeeccHHHHHHHHHHH
Confidence 776433211111 12335677788999999666655 4599998764 888887777755
No 314
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.30 E-value=2.6e-10 Score=96.96 Aligned_cols=206 Identities=15% Similarity=0.064 Sum_probs=130.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc-CCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV-PGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g~r~G~ 90 (246)
.+++-.|.||...+ +++|++ +++|+++|+|-+.+..... . .+..+ -+++.|.-|.+++ +| +|+
T Consensus 141 ~~~h~~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs~G~~p---i-dv~~i-----D~~~~s~~K~l~~P~G--~g~ 204 (378)
T PRK03080 141 VFTWNGTTTGVRVP---VARWIG--ADREGLTICDATSAAFALP---L-DWSKL-----DVYTFSWQKVLGGEGG--HGM 204 (378)
T ss_pred EEEecCCccceecc---chhhcc--ccCCCeEEEecccccccCC---C-CHHHC-----cEEEEehhhhCCCCCc--eEE
Confidence 55566689999998 666666 7789999999987754322 1 12222 2788889998765 66 888
Q ss_pred EEeeCCCCCcchhhHHHHHHHHh----------------------hh-c-CCCCchHHHHHHHHHhhchHH-HHHHHHHH
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFL----------------------NI-S-SDPATFIQGAVPQILEKTEEE-FFSKIIDI 145 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~----------------------~~-~-~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~ 145 (246)
++.++ +.++++.... .. + ..++.....++.++|+...+. -++...++
T Consensus 205 l~v~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r 276 (378)
T PRK03080 205 AILSP--------RAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIAR 276 (378)
T ss_pred EEECH--------HHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88887 6666554210 00 0 022333333435555532233 36777888
Q ss_pred HHHHHHHHHHHhhcCCCCcccc-CC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee
Q 042445 146 LRETADKCCDRLKEIPCITCPK-KP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA 222 (246)
Q Consensus 146 ~~~~~~~l~~~L~~~~~~~~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~ 222 (246)
.++..+.+.+.|++++++..+. .+ .++..+.+.++... ++ .+.+....++ ++|+.+..|.+....+.+|+|+.
T Consensus 277 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~-~~--~~~~~~~~l~-~~~i~v~~g~~~~~~~~vRis~~ 352 (378)
T PRK03080 277 TAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ-AA--VDAAAVAKLL-RENGAVDIEPYRDAPNGLRIWCG 352 (378)
T ss_pred HHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCch-HH--HHHHHHHHHH-HcCCeeccccccCCCCcEEEecC
Confidence 8889999999999886655332 12 12233444454300 00 1344555544 56888877654323688999988
Q ss_pred c--ChHHHHHHHHHHHHHHHHHhhc
Q 042445 223 V--EPSALENGLGRMKAFYDRHAEK 245 (246)
Q Consensus 223 ~--~~~~l~~~~~~l~~~~~~~~~~ 245 (246)
. ++++++.+++.|++++++.+..
T Consensus 353 ~~~t~~di~~l~~al~~~~~~~~~~ 377 (378)
T PRK03080 353 PTVEPADVEALTPWLDWAFERLKAA 377 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 4 8999999999999998877653
No 315
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.29 E-value=3.1e-10 Score=92.42 Aligned_cols=151 Identities=16% Similarity=0.138 Sum_probs=100.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
|.++++|.++ +.-.-.||.+.+++ +++|.++|+++++++|+|..++.-.+- ..+ ...--|+++|+
T Consensus 138 ~~~~~aI~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl~-------rP~-~hGADIVvHS~ 206 (426)
T COG2873 138 ENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYLC-------RPI-EHGADIVVHSA 206 (426)
T ss_pred HHHHHHhCcccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcceec-------chh-hcCCCEEEEee
Confidence 5677778876 55566699999987 999999999999999999988742211 111 11123899999
Q ss_pred ccccccCCceEEEEEeeCCCCCc--------------------------chhhHHHHHH--HHhhhcCCCCchHHHHHHH
Q 042445 78 SKRGIVPGLRLGWLVTSDPNGIL--------------------------QDSGIVDSIK--IFLNISSDPATFIQGAVPQ 129 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~~~~~~--------------------------~~~~~~~~l~--~~~~~~~~~~~~~q~~~~~ 129 (246)
||..|+.|--+|-++.... .+. .+..++-+.+ ..++.+.+.||+....+..
T Consensus 207 TK~igGhGt~iGG~iVD~G-~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lq 285 (426)
T COG2873 207 TKYIGGHGTAIGGVIVDGG-KFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQ 285 (426)
T ss_pred cccccCCccccceEEEeCC-ccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHh
Confidence 9999999999999887652 110 0000111111 1233444566666655555
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 130 ILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
-++. +.-+.++..+|...+.+.|+.+|.+.++..|
T Consensus 286 GlET-----L~LRmerH~~NA~~vA~~L~~HpkV~~V~Yp 320 (426)
T COG2873 286 GLET-----LSLRMERHCENALKVAEFLENHPKVAWVNYP 320 (426)
T ss_pred chhh-----hHHHHHHHHHhHHHHHHHHhcCCCeeeeecC
Confidence 5543 6666677788999999999998877654444
No 316
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.29 E-value=4.5e-10 Score=95.24 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=90.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCC-ceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPG-LRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-~r~G~ 90 (246)
+...|+|||+.+.+ +++|.++|++++ +++|.++.... .+. ++. .+ --+++.|.+|.++++| .-.|.
T Consensus 153 ~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~~-~~~---pl~-~g---aDivv~S~tK~i~G~~d~~gG~ 219 (384)
T PRK06434 153 YAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASPY-NQN---PLD-LG---ADVVIHSATKYISGHSDVVMGV 219 (384)
T ss_pred EEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCcc-cCC---chh-cC---CCEEEeecccccCCCCCceEEE
Confidence 57789999998754 999999999998 46699975322 111 221 11 2388889999988766 44565
Q ss_pred EEeeCCCCCcchhhHHHHHHHHh-hhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFL-NISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKP 169 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 169 (246)
+++.++ ++.++++... ..+...+++..+.+.+-|+ .+..+.++.+++...+.+.|+++|.+..+..|
T Consensus 220 vv~~~~-------~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~-----tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yP 287 (384)
T PRK06434 220 AGTNNK-------SIFNNLVERRKTLGSNPDPIQAYLALRGLK-----TLGLRMEKHNKNGMELARFLRDSKKISNVYYP 287 (384)
T ss_pred EecCcH-------HHHHHHHHHHHhcCCCCCHHHHHHHHhCCC-----cHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence 656442 6666666543 3444556665555555554 36777777788999999999998877655555
Q ss_pred C
Q 042445 170 E 170 (246)
Q Consensus 170 ~ 170 (246)
.
T Consensus 288 g 288 (384)
T PRK06434 288 D 288 (384)
T ss_pred C
Confidence 3
No 317
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.8e-11 Score=99.65 Aligned_cols=191 Identities=12% Similarity=0.062 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHcCCEEEEccccCCcccCC--CCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhH
Q 042445 28 FVSPIAETAKKLGIMVIANEVYGHLAFGN--TPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGI 105 (246)
Q Consensus 28 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~ 105 (246)
.++++++++++|.++++.||+++....+. .+..-....++.+..|.+++|+|.|+.+| ||+.+++ ++
T Consensus 294 ~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk--------~l 362 (519)
T KOG1357|consen 294 DLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSK--------EL 362 (519)
T ss_pred ccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccccc---ceecCcH--------HH
Confidence 68999999999999999999999877643 33333445567777899999999999999 9999999 99
Q ss_pred HHHHHHHhhh----cCCCCchHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC-ceEEEE
Q 042445 106 VDSIKIFLNI----SSDPATFIQGAVPQILE---KTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG-SMFVMV 177 (246)
Q Consensus 106 ~~~l~~~~~~----~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-g~~~~~ 177 (246)
++.++..... ++..+|+.|.....+.- +......++..+++.++...++..|+.. |+..+...+. -.-+.+
T Consensus 363 id~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll 441 (519)
T KOG1357|consen 363 IDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLL 441 (519)
T ss_pred HhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeee
Confidence 9998876331 21334444444333222 1123667777888899999999999886 5543322222 222222
Q ss_pred EeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445 178 KLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL---KDWLRITFAV--EPSALENGLGRMKAF 238 (246)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~--~~~~l~~~~~~l~~~ 238 (246)
-.+.. -..+-. .+.+++|.++-..+... ...+|++.+. +.|+++.+++.+.+.
T Consensus 442 ~~~~k-------~~~f~r-~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~ 499 (519)
T KOG1357|consen 442 YGPAK-------IVAFSR-EMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRV 499 (519)
T ss_pred cCccc-------ccHHHH-HHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence 12221 334433 45566666665444332 6888999885 788888888877665
No 318
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.25 E-value=4.8e-10 Score=96.22 Aligned_cols=219 Identities=14% Similarity=0.094 Sum_probs=131.2
Q ss_pred hhhhhhhcc---c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445 2 ELINQDITR---E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL 74 (246)
Q Consensus 2 e~~~~~~~~---~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (246)
+.+++.|++ + +.++|+ ||.....+++++|.++|++||+++|+|++|+.....-.... -.......-.+++
T Consensus 192 e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~-~~g~~~Grad~vv 268 (444)
T TIGR03531 192 EDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELI-NKAIKVGRVDAVV 268 (444)
T ss_pred HHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhh-hccccccCCCeEE
Confidence 456666663 2 555552 66666778999999999999999999999995331100000 0111110113567
Q ss_pred cccccccccCCceEEEEE-eeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 042445 75 GSISKRGIVPGLRLGWLV-TSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKC 153 (246)
Q Consensus 75 ~s~sK~~~~~g~r~G~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 153 (246)
.|++|.+.+||. |+++ +.++ ++++.+..... ....+...|.+...++.. ..+.+++..+...++++.+
T Consensus 269 ~s~hK~l~~pg~--Gg~I~~~d~-------el~~~i~~~y~-g~~~~s~~~~~~~~ll~~-G~~g~~~li~~~~~~a~~l 337 (444)
T TIGR03531 269 SSTDKNFMVPVG--GAIIYSFDE-------NFIQEISKSYP-GRASASPSLDVLITLLSL-GSKGYLELLKERKEMYKYL 337 (444)
T ss_pred EeCccCCCCCCC--EEEEEECCH-------HHHHHHHHhcc-CCCCChHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHH
Confidence 799999988876 6665 5343 77777765432 223455677777777764 3567777888888899988
Q ss_pred HHHhhcCC---CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeE----EecCC-------CcCC------
Q 042445 154 CDRLKEIP---CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVI----VLPGI-------TVGL------ 213 (246)
Q Consensus 154 ~~~L~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~----v~pg~-------~f~~------ 213 (246)
.+.|+++. |-.....|.-...+-+.+... . ..+...+-..|-.++|. |.||. .|..
T Consensus 338 ~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~--~--~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~ 413 (444)
T TIGR03531 338 KELLQKLAERHGERLLDTPENPISSAMTLSTL--K--GKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTS 413 (444)
T ss_pred HHHHHHHHHhhCcEeecCCCCceeEEEecccc--c--ccCHHHHHHHHHhCCCCCceeecCCCceEECCEEeeccccccc
Confidence 88887632 333223334344444444321 1 12344445556566552 34554 2211
Q ss_pred ---CCeEEEE--eecChHHHHHHHHHHHHH
Q 042445 214 ---KDWLRIT--FAVEPSALENGLGRMKAF 238 (246)
Q Consensus 214 ---~~~iRls--~~~~~~~l~~~~~~l~~~ 238 (246)
..++-++ ++.+.++++..+++|.++
T Consensus 414 ~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 414 NYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred CCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 1255444 335888999999998875
No 319
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.25 E-value=1.3e-09 Score=92.92 Aligned_cols=198 Identities=16% Similarity=0.175 Sum_probs=115.7
Q ss_pred CcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcccc--cccccCCceEEEEE
Q 042445 16 QVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSIS--KRGIVPGLRLGWLV 92 (246)
Q Consensus 16 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~s--K~~~~~g~r~G~i~ 92 (246)
++||+|...+ +++|.++|+++|+++|+|++++.+. +.+....+. .++ -+.+.|++ |.++++ ..|+++
T Consensus 127 ~~~~~G~~~~---~~~i~~l~~~~~~~lI~D~a~a~g~~~~~~~~g~~-~~~----d~~~~S~~~~K~~~~~--~GG~v~ 196 (380)
T TIGR03588 127 PVDFAGKSVD---MQAIAALAKKHGLKIIEDASHALGAEYGGKPVGNC-RYA----DATVFSFHPVKIITTA--EGGAVT 196 (380)
T ss_pred EeCCCCccCC---HHHHHHHHHHcCCEEEEECCCcccCccCCEeCCCc-ccc----ceEEEecCCCCccccc--CceEEE
Confidence 4578997755 8899999999999999999998653 443222110 011 25566654 887543 357788
Q ss_pred eeCCCCCcchhhHHHHHHHHhhhcC--------------------------CCCchHHHHHHHHHhhchHHHHHHHHHHH
Q 042445 93 TSDPNGILQDSGIVDSIKIFLNISS--------------------------DPATFIQGAVPQILEKTEEEFFSKIIDIL 146 (246)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~~~~--------------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 146 (246)
+.++ ++.++++.....+. .++.+..+.... .-..+++..+.-
T Consensus 197 ~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~-----qL~~l~~~~~~r 264 (380)
T TIGR03588 197 TNDE-------ELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLS-----QLKKLDRFVAKR 264 (380)
T ss_pred ECCH-------HHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHH-----HHHHHHHHHHHH
Confidence 7763 67776665422110 111111111111 122356666666
Q ss_pred HHHHHHHHHHhhcCCCCccccCCCC---c-eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCc-----------
Q 042445 147 RETADKCCDRLKEIPCITCPKKPEG---S-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITV----------- 211 (246)
Q Consensus 147 ~~~~~~l~~~L~~~~~~~~~~~~~~---g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f----------- 211 (246)
+++.+.+.+.|..++++..+..+.+ . +...+.++... +. +.+.+.+.|.++||.+......
T Consensus 265 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~--~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~ 340 (380)
T TIGR03588 265 REIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEF--GC--TRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGF 340 (380)
T ss_pred HHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcC--CC--CHHHHHHHHHHCCCCcccCCcccccChhhhccC
Confidence 7788888888888876653322221 2 22233343210 11 4555666788999988743311
Q ss_pred C---C-------CCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445 212 G---L-------KDWLRITFAV--EPSALENGLGRMKAFY 239 (246)
Q Consensus 212 ~---~-------~~~iRls~~~--~~~~l~~~~~~l~~~~ 239 (246)
. . .+.+++.+.. ++++++..++.|++++
T Consensus 341 ~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 341 GDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred CcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 0 0 2667777663 8888999888888763
No 320
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.25 E-value=7.9e-10 Score=93.41 Aligned_cols=200 Identities=12% Similarity=0.051 Sum_probs=125.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
.+++-.|.||+..+.+++ ++++|+++++|-+.+..... ..+..+ -+++.|.-|.++++|- ++.+
T Consensus 133 ~~~h~et~tG~~~pi~~I------~~~~g~~~iVDavqs~g~~~----idv~~~-----D~~~~s~~K~lg~~~G-l~~~ 196 (361)
T TIGR01366 133 AWAHNETSTGVAVPVRRP------EGSDDALVVIDATSGAGGLP----VDIAET-----DVYYFAPQKNFASDGG-LWLA 196 (361)
T ss_pred EEcccCCccceecccccc------cccCCCeEEEEcCccccCCC----CCHHHC-----CEEEEEchhhcCCCCc-eEEE
Confidence 566667999999995543 47899999999987753311 122211 2678889999998853 5555
Q ss_pred EeeCCCCCcchhhHHHHHHHH----------hh-----------h-cCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHH
Q 042445 92 VTSDPNGILQDSGIVDSIKIF----------LN-----------I-SSDPATFIQGAVPQILEKTEEE-FFSKIIDILRE 148 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~----------~~-----------~-~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~ 148 (246)
+.++ ++++++... .+ . .+.++....+++.++++.-.+. -++...++.++
T Consensus 197 ~~s~--------~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~ 268 (361)
T TIGR01366 197 IMSP--------AALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTAD 268 (361)
T ss_pred EECH--------HHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6666 555554311 00 0 1122333333555555532222 26667788889
Q ss_pred HHHHHHHHhhcCCCCccccCCC---CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--
Q 042445 149 TADKCCDRLKEIPCITCPKKPE---GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV-- 223 (246)
Q Consensus 149 ~~~~l~~~L~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~-- 223 (246)
..+.+.+.|++.+++..+.... ......+.++.. . +.+.+...|.++||.+.++...-..+.+|+|+..
T Consensus 269 l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g----~--~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~ 342 (361)
T TIGR01366 269 SSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDD----I--DAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAI 342 (361)
T ss_pred HHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCc----c--CHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCC
Confidence 9999999999886554332211 112223344322 1 4444555667889999876422226789999984
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 042445 224 EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 224 ~~~~l~~~~~~l~~~~~~ 241 (246)
+.++++++++.|++.+++
T Consensus 343 t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 343 DPDDVEALTECVDWVVER 360 (361)
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 899999999999988765
No 321
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.20 E-value=7.5e-09 Score=86.52 Aligned_cols=222 Identities=18% Similarity=0.189 Sum_probs=144.9
Q ss_pred hhhhhhhccc----cccCCc--CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEc
Q 042445 2 ELINQDITRE----FSDFQV--FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLG 75 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~--NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (246)
|.+++.+.+. .+...| .+||+.-+ +++|.++|++||+++|+|-+=+ +++.++ .++.+.--+.+.
T Consensus 120 ~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS---~Gg~~~----~vd~wgiDv~it 189 (383)
T COG0075 120 EEVEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSS---LGGEPL----KVDEWGIDVAIT 189 (383)
T ss_pred HHHHHHHhcCCCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEeccc---CCCccc----chhhcCccEEEe
Confidence 4455555532 233333 48888765 9999999999999999998644 233222 223333448888
Q ss_pred cccccccc-CCceEEEEEeeCC----------CCCcchhhHHHHHHHHh---hhcCCCCchHHHHHHHHHhhchHHHHHH
Q 042445 76 SISKRGIV-PGLRLGWLVTSDP----------NGILQDSGIVDSIKIFL---NISSDPATFIQGAVPQILEKTEEEFFSK 141 (246)
Q Consensus 76 s~sK~~~~-~g~r~G~i~~~~~----------~~~~~~~~~~~~l~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 141 (246)
+.-|++++ || +|++..++. ..++. ++.+..+... .+-++++....+++..+|+...++-++.
T Consensus 190 gSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~yl--DL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~ 265 (383)
T COG0075 190 GSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYL--DLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEA 265 (383)
T ss_pred cCchhccCCCc--cceeEECHHHHHHHhcCCCCceee--cHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 88999886 67 677776651 00111 2222222221 1222556666677778888655677999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccCCC-Cc-eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEE
Q 042445 142 IIDILRETADKCCDRLKEIPCITCPKKPE-GS-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRI 219 (246)
Q Consensus 142 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRl 219 (246)
+.++++++.+.+++.++++ |+..+..++ .. ....+.++.+ + ++.+....+++++|+.+.+|...-....+||
T Consensus 266 r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g----~-~~~~~~~~~~~~~g~~i~gg~~~l~gkifRI 339 (383)
T COG0075 266 RIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEG----V-DDKKVRRALLKEYGVEIAGGQGPLKGKIFRI 339 (383)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCC----C-CcHHHHHHHHHhCCEEecccccccCccEEEE
Confidence 9999999999999999998 666544221 12 2222334432 2 3444445788888999988776555789999
Q ss_pred Eee-c-ChHHHHHHHHHHHHHHHHHh
Q 042445 220 TFA-V-EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 220 s~~-~-~~~~l~~~~~~l~~~~~~~~ 243 (246)
+-. . ..+++..++..|+.++.++.
T Consensus 340 GhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 340 GHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred ecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 855 3 88899999999999988753
No 322
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.19 E-value=1.7e-09 Score=90.89 Aligned_cols=195 Identities=15% Similarity=0.090 Sum_probs=130.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
.+++-.|.||+..+ ++++.+++++++|-+.+.... ...+.. .+ +++.|.-|.||.|| +|++
T Consensus 135 ~~th~ETstGv~~~--------~l~~~~~~l~iVDavss~g~~----~id~~~---~d--~~~~ssqK~lgP~G--lg~l 195 (349)
T TIGR01364 135 HYCANETIHGVEFR--------ELPDVKNAPLVADMSSNILSR----PIDVSK---FG--LIYAGAQKNIGPAG--LTVV 195 (349)
T ss_pred EEcCCCCcccEecc--------eecccCCCeEEEEccccccCc----cCCHHH---cc--EEEEecccccCCCc--eEEE
Confidence 44555579999765 556678999999998774331 112222 23 88888999998887 8888
Q ss_pred EeeCCCCCcchhhHHHHHHH----------Hh--h-hcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHh
Q 042445 92 VTSDPNGILQDSGIVDSIKI----------FL--N-ISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~----------~~--~-~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L 157 (246)
+.++ ++++++.. .. . ..++++....+++.++|+.-.+. -++.+.++.++..+.+.+.|
T Consensus 196 ~~s~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l 267 (349)
T TIGR01364 196 IVRK--------DLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTI 267 (349)
T ss_pred EECH--------HHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 8887 66654421 11 1 12256677777777777754444 48999999999999999999
Q ss_pred hcCCCCcccc-CC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHH
Q 042445 158 KEIPCITCPK-KP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGL 232 (246)
Q Consensus 158 ~~~~~~~~~~-~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~ 232 (246)
++++|+.... .| ..+..+.+.++... ........+.++|+++.+|.. ..+.+|+|+.. +.++++.++
T Consensus 268 ~~~~gl~~~~~~~~~rs~~v~sf~~~~~~------~~~~~~~~~~~~Gi~~~~~~~--~~g~vRvS~~~~nt~edid~l~ 339 (349)
T TIGR01364 268 DNSNGFYRNPVDPRNRSRMNVVFTLGNEE------LEKRFLKEAEERGLVSLKGHR--SVGGMRASIYNAMPLEGVQALV 339 (349)
T ss_pred HhCCCeeccCCCHHHcCCeEEEEecCChh------HhHHHHHHHHHCCCcccCCcc--ccCeeEEECcCCCCHHHHHHHH
Confidence 9997764321 12 12233444444221 113344567789997777765 24789999885 799999999
Q ss_pred HHHHHHHHH
Q 042445 233 GRMKAFYDR 241 (246)
Q Consensus 233 ~~l~~~~~~ 241 (246)
+.|+++.++
T Consensus 340 ~al~~~~~~ 348 (349)
T TIGR01364 340 DFMKEFQKK 348 (349)
T ss_pred HHHHHHHHh
Confidence 999987765
No 323
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.17 E-value=1.9e-09 Score=91.04 Aligned_cols=196 Identities=16% Similarity=0.092 Sum_probs=131.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
.+++-.|.||+..+ ++++| +|+++|+|-+.+.... ...+..+ + +++.|.-|.||.+| +|++
T Consensus 146 ~~th~eTstGv~~~--~i~~i------~g~l~vVDavss~g~~----~idv~~~---d--~~~~ssqK~lgP~G--lg~l 206 (360)
T PRK05355 146 HYTSNETIDGTEFH--ELPDT------GDVPLVADMSSDILSR----PIDVSKF---G--LIYAGAQKNIGPAG--LTIV 206 (360)
T ss_pred EEccCCCcceEecC--ccccc------CCCcEEEEcCccccCc----cCCHHHc---c--EEEEeccccccCCc--eEEE
Confidence 44555589999874 24444 8999999998775331 1122222 2 88888899998777 7888
Q ss_pred EeeCCCCCcchhhHHHHHHH-----------Hh--hhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHh
Q 042445 92 VTSDPNGILQDSGIVDSIKI-----------FL--NISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~-----------~~--~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L 157 (246)
+.++ ++++++.. .. ...+++|....+++.++|+...+. -++.+.++.++..+.+++.|
T Consensus 207 ~~s~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l 278 (360)
T PRK05355 207 IVRE--------DLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAI 278 (360)
T ss_pred EECH--------HHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 8887 55554432 11 112366777777888888754445 58899999999999999999
Q ss_pred hcCCCCccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHH
Q 042445 158 KEIPCITCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLG 233 (246)
Q Consensus 158 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~ 233 (246)
++++.+..+..+ ..+..+.+.++... ..+.....+.++|+.+.+|.. ..+.+|+|+.. +.++++.+++
T Consensus 279 ~~~~~~~~~~~~~~rs~~v~sf~~~~~~------~~~~~~~~~~~~Gi~~~~~~~--~~g~vRiS~~~~nt~eei~~l~~ 350 (360)
T PRK05355 279 DSSDFYRNPVAPEDRSRMNVPFTLADEE------LDKKFLAEAKAAGLVGLKGHR--SVGGMRASIYNAMPLEGVQALVD 350 (360)
T ss_pred HhCCCcccCCChhhcCCcEEEEEcCChH------HHHHHHHHHHHCCCcccCCCC--ccCcEEEECCCCCCHHHHHHHHH
Confidence 998633222221 22233444454321 223344466789999866653 35889999985 7999999999
Q ss_pred HHHHHHHHH
Q 042445 234 RMKAFYDRH 242 (246)
Q Consensus 234 ~l~~~~~~~ 242 (246)
.|+++++++
T Consensus 351 ~l~~~~~~~ 359 (360)
T PRK05355 351 FMKEFERRH 359 (360)
T ss_pred HHHHHHHhc
Confidence 999987654
No 324
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.17 E-value=6.8e-09 Score=88.66 Aligned_cols=223 Identities=17% Similarity=0.161 Sum_probs=141.6
Q ss_pred hhhhhhhccc--------cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCcc----------cCCCCCc-c
Q 042445 2 ELINQDITRE--------FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA----------FGNTPFV-S 61 (246)
Q Consensus 2 e~~~~~~~~~--------~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~----------~~~~~~~-~ 61 (246)
+.+++.|+++ ...+++|.. |+..|.++++++.++|++||+.+|.|-+..... +.+.... .
T Consensus 164 d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei 243 (460)
T PRK13237 164 DKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEI 243 (460)
T ss_pred HHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHH
Confidence 4556666543 356777887 799999999999999999999999999877331 2221110 0
Q ss_pred ccccCCcccEEEEcccccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHh----hh-cC-CCCchHHHHHHHHHhhc
Q 042445 62 MGVFGSIVPLLTLGSISKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFL----NI-SS-DPATFIQGAVPQILEKT 134 (246)
Q Consensus 62 ~~~~~~~~~~i~~~s~sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~----~~-~~-~~~~~~q~~~~~~l~~~ 134 (246)
+........ ....|++|.++.+ | |++++.++ ++.++++... .+ ++ +.+.=...+++..|.+.
T Consensus 244 ~~e~~s~aD-~~t~S~~K~~~~~~G---G~i~t~D~-------eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~ 312 (460)
T PRK13237 244 VHEMFSYAD-GCTMSGKKDCLVNIG---GFLAMNDE-------ELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEES 312 (460)
T ss_pred hhhccCcCc-EEEEeCCCCCCCCCc---eEEEECCH-------HHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhh
Confidence 111122222 4555689997765 4 88888775 8888887662 11 11 22333445555555543
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCC----ChHHHHHHHHHhcCeEEec-C
Q 042445 135 E-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN----SDMEFALKLAKEESVIVLP-G 208 (246)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gi~v~p-g 208 (246)
. ..|+..+.+ ..+.|.+.|++. |+. +..|.||.-++++...- ++.++ ....++..+-.+.||-..- |
T Consensus 313 ~~~~y~~~ri~----~~~~l~~~L~~~-Gvp-v~~p~ggH~v~vda~~~-lph~~~~~~p~~al~~~ly~~~GiR~~e~g 385 (460)
T PRK13237 313 VQYEYIEHRVG----QVRYLGEKLLAA-GVP-IVEPVGGHAVFLDARRF-LPHLPQDQFPAQALAAELYIESGVRSMERG 385 (460)
T ss_pred chHHHHHHHHH----HHHHHHHHHHHC-CCc-eecCCCceEEEEEhHHh-CCCCCcccChHHHHHHHHHHHhCcCeEeec
Confidence 3 344444433 557777788775 666 56789999988764320 11111 2566788888899986653 3
Q ss_pred CCc-CC---------C--CeEEEEeec---ChHHHHHHHHHHHHHHHHH
Q 042445 209 ITV-GL---------K--DWLRITFAV---EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 209 ~~f-~~---------~--~~iRls~~~---~~~~l~~~~~~l~~~~~~~ 242 (246)
+.. +. + ..+|+++.. +.+.++...+.+....++-
T Consensus 386 ~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 434 (460)
T PRK13237 386 IVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHR 434 (460)
T ss_pred ceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhH
Confidence 221 11 1 679999983 8999999999998887653
No 325
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.14 E-value=1.9e-10 Score=94.64 Aligned_cols=132 Identities=18% Similarity=0.143 Sum_probs=77.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCc-ccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHL-AFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++| ||+|.+++ +++|.++|+++|+++|+||+|..+ .+.+...... ...+..+++.|++|.+ +|++.|+
T Consensus 159 ~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~---~~~~~div~~S~hK~l--~g~~~~~ 229 (294)
T cd00615 159 VITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA---AMAGADIVVQSTHKTL--PALTQGS 229 (294)
T ss_pred EEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccCcch---hhcCCcEEEEchhccc--chHhHHH
Confidence 88889 89999987 889999999999999999999853 3333211111 1224569999999984 6777766
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLK 158 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 158 (246)
++..+.. . ....++..... .+++++.....++..++... ..+-.+..+...++.+.+++.|.
T Consensus 230 ~l~~~~~-~----~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~-~~~g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 230 MIHVKGD-L----VNPDRVNEALNLHQSTSPSYLILASLDVARAMM-ALEGKELVEELIELALYARQEIN 293 (294)
T ss_pred HHHhCCC-c----CCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHh
Confidence 5544321 1 11233433322 12244444444444444421 12233344445555555555543
No 326
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.13 E-value=9.6e-09 Score=87.52 Aligned_cols=223 Identities=17% Similarity=0.134 Sum_probs=139.0
Q ss_pred hhhhhhhccc--------cccCCcC-CCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc--c-----CCCCCccc---
Q 042445 2 ELINQDITRE--------FSDFQVF-HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA--F-----GNTPFVSM--- 62 (246)
Q Consensus 2 e~~~~~~~~~--------~~~~p~N-PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~--~-----~~~~~~~~--- 62 (246)
+.+++.|++. .+.+++| +.|.++|.++++++.++|++||+.++.|-+..... + .+..-.++
T Consensus 157 ~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei 236 (450)
T TIGR02618 157 KKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEI 236 (450)
T ss_pred HHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHH
Confidence 4556666642 4567777 55899999999999999999999999999876421 1 11111122
Q ss_pred -cccCCcccEEEEcccccccccC-CceEEEEEeeCCCCCcchhhHHHHHHHHhhhc-----C-CCCchHHHHHHHHHhhc
Q 042445 63 -GVFGSIVPLLTLGSISKRGIVP-GLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS-----S-DPATFIQGAVPQILEKT 134 (246)
Q Consensus 63 -~~~~~~~~~i~~~s~sK~~~~~-g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~-----~-~~~~~~q~~~~~~l~~~ 134 (246)
..+-.... .+..|..|.++++ | |+++..++ ++.++++...-.. + +.+.-...+++..|.+.
T Consensus 237 ~~e~~~~aD-~~~~S~~Kd~~~~~G---G~l~~~d~-------~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~ 305 (450)
T TIGR02618 237 LKEMMSYAD-GCTMSGKKDCLVNIG---GFLCMNDD-------EMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREA 305 (450)
T ss_pred HHHHhccCc-EEEEeeccCCCCCCc---eEEEeCCH-------HHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHh
Confidence 11111112 3677788887666 5 66665554 8888887662211 1 22333444444445432
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCC----ChHHHHHHHHHhcCeEEec-C
Q 042445 135 EE-EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGIN----SDMEFALKLAKEESVIVLP-G 208 (246)
Q Consensus 135 ~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gi~v~p-g 208 (246)
.+ .+++.. ....+.|.+.|.+. |+. ++.|.+|+-++++...- ++.++ ....++..+-.+.||-..- |
T Consensus 306 ~~~~y~~~r----~~~a~~La~~L~~~-Gvp-v~~p~ggh~V~vda~~~-lph~~~~~~p~~al~~~ly~~~gir~~e~g 378 (450)
T TIGR02618 306 VDYEYIEHR----VKQVRYLGDKLKAA-GVP-IVEPVGGHAVFLDARRF-LPHIPQDQFPAQSLAASIYVETGVRSMERG 378 (450)
T ss_pred hhHHHHHHH----HHHHHHHHHHHHHC-CCc-ccCCCCcceEEEEhHHh-CCCCChhhChHHHHHHHHHHHhCccEEeec
Confidence 21 222222 23477888888887 777 46788999999865421 11111 2566778888899987654 3
Q ss_pred CCcC-C---------C--CeEEEEeec---ChHHHHHHHHHHHHHHHHH
Q 042445 209 ITVG-L---------K--DWLRITFAV---EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 209 ~~f~-~---------~--~~iRls~~~---~~~~l~~~~~~l~~~~~~~ 242 (246)
+... . + ..+|+++.. +.+.++...+.+....++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~ 427 (450)
T TIGR02618 379 IVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHR 427 (450)
T ss_pred ceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhH
Confidence 3321 1 1 689999983 8999999999998887653
No 327
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.10 E-value=8e-09 Score=95.73 Aligned_cols=210 Identities=13% Similarity=0.037 Sum_probs=129.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHc-----CCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccC-C
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKL-----GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVP-G 85 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~-----~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-g 85 (246)
.++..+|-||..+|.+.+..+.+.+..+ ++++++|-+++.... ...+..++ .-++..|+-|.||.| |
T Consensus 197 a~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~----piDv~~~~---~Dfl~~S~HK~~GgP~G 269 (805)
T PLN02724 197 AFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTS----PPDLSRYP---ADFVVVSFYKIFGYPTG 269 (805)
T ss_pred EEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCC----CCChhhcC---CCEEEEecceeccCCCC
Confidence 6667789999999966444333332222 367999998774331 11223332 237888999998744 5
Q ss_pred ceEEEEEeeCCCCCcchhhHHHHHHHHh------------------------hh-cCCCCchHHHHHHHHHhhchHHHHH
Q 042445 86 LRLGWLVTSDPNGILQDSGIVDSIKIFL------------------------NI-SSDPATFIQGAVPQILEKTEEEFFS 140 (246)
Q Consensus 86 ~r~G~i~~~~~~~~~~~~~~~~~l~~~~------------------------~~-~~~~~~~~q~~~~~~l~~~~~~~~~ 140 (246)
+|++++.+ ++.+.+.... .+ ..++|..+..++.++++......++
T Consensus 270 --~G~L~vr~--------~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~ 339 (805)
T PLN02724 270 --LGALLVRR--------DAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTIS 339 (805)
T ss_pred --ceEEEEeh--------hhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChH
Confidence 78888877 5544443210 01 1134555555666666532233467
Q ss_pred HHHHHHHHHHHHHHHHhhcCC------CCccccCC-------CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEec
Q 042445 141 KIIDILRETADKCCDRLKEIP------CITCPKKP-------EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLP 207 (246)
Q Consensus 141 ~~~~~~~~~~~~l~~~L~~~~------~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p 207 (246)
+..++.++..+.+.+.|++++ ++..+... .-+..+.+.+....-..+ ....+..++.++||.++.
T Consensus 340 ~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v--~~~~v~~l~~~~gI~vR~ 417 (805)
T PLN02724 340 AIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWV--GHREVEKLASLSGIQLRT 417 (805)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEe--CHHHHHHHHHhcCcEEee
Confidence 777888888888898888765 35433221 112233333432110001 234466778889999999
Q ss_pred CCCcCC-----------------------------------CCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445 208 GITVGL-----------------------------------KDWLRITFAV--EPSALENGLGRMKAFYD 240 (246)
Q Consensus 208 g~~f~~-----------------------------------~~~iRls~~~--~~~~l~~~~~~l~~~~~ 240 (246)
|.+|.. .+.+|+|++. +.++++++++.|.+.+.
T Consensus 418 G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 418 GCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred ccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 988752 2789999995 88999999999988764
No 328
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.04 E-value=7.8e-09 Score=85.26 Aligned_cols=197 Identities=16% Similarity=0.148 Sum_probs=128.3
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445 23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD 102 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~ 102 (246)
..+++.+..|..+|+++++++|.||++.+|...+... ....+.- ..-+-++.|.+ ..|+.+|..++.+
T Consensus 223 p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~-a~e~~~~---~PDI~t~aK~L-~gGlPigA~~v~~------- 290 (433)
T KOG1401|consen 223 PADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGW-AQEYFGV---TPDITTVAKPL-GGGLPIGATGVRD------- 290 (433)
T ss_pred cCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHH-HHHHhCc---CCcceeehhhc-cCCceeEEEeehH-------
Confidence 3567899999999999999999999999988766432 2112221 12266788995 6779999999999
Q ss_pred hhHHHHHHHH-h---hhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEE
Q 042445 103 SGIVDSIKIF-L---NISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMV 177 (246)
Q Consensus 103 ~~~~~~l~~~-~---~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~ 177 (246)
++.+.+... . ..+++.||+++.++...|..-. ..+++.+..+-+..++.+.+.+.+.+.... ..-.-++++..
T Consensus 291 -kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~-g~~grgl~ig~ 368 (433)
T KOG1401|consen 291 -KVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSIC-GGVGRGLVIGF 368 (433)
T ss_pred -HHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCcee-eeeeeEEEEEE
Confidence 888888654 2 4567899999999999998543 577888888888888888888877432221 11233555555
Q ss_pred EeccccccCCCChHHHHHHHHH-------hcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHH
Q 042445 178 KLNYSLLEGINSDMEFALKLAK-------EESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~ll~-------~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~ 242 (246)
.+..+... ..+.....-.+.. +.|+.+.|-+ -+++..++|.++++++.+.+.+.++
T Consensus 369 ~~~~p~~~-~~d~~~~~~ll~~~~~~~~~~~gv~i~P~~--------~l~~~~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 369 EFEGPVYK-FADAAREQGLLILTLGKGLLEEGVRIAPIY--------LLTVEHTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred EEeechhh-hhhhhhhhhHHHHHHhcccccceEEEeccc--------cccccCcHHHHHHHHHHHHHHHHHh
Confidence 44332211 1112221111111 2234444411 1223335888999999999988765
No 329
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.03 E-value=3e-08 Score=83.72 Aligned_cols=195 Identities=18% Similarity=0.101 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC------CCCC
Q 042445 27 SFVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD------PNGI 99 (246)
Q Consensus 27 ~~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~------~~~~ 99 (246)
-+++++.++|.+.|++++.|-+|. ++..++-...|+... -|+.+|..|.|. |=|-|.|.+.. ...-
T Consensus 184 ~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~A-----Dvvt~sThKtl~--GPrggiI~~~~~~~~~~~~~~ 256 (399)
T PF00464_consen 184 IDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYA-----DVVTGSTHKTLR--GPRGGIILTNKGSKNVDKKGK 256 (399)
T ss_dssp --HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTS-----SEEEEESSGGG---SSS-EEEEES-SEEEE-TTS-
T ss_pred cCHHHHHHHHHhcCcEEEecccccccceehheecCccccc-----eEEEeecccccc--ccCceEEEEcCCccccCCccc
Confidence 357899999999999999999988 444454333344322 188899999965 44567777770 0000
Q ss_pred cchhhHHHHHHHHhhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEE
Q 042445 100 LQDSGIVDSIKIFLNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMV 177 (246)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~ 177 (246)
..+.++.+++.....++. ++..-..++.+.++.+......++..++.-+|++.|.+.|.+. |+..+........+|+
T Consensus 257 ~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlv 335 (399)
T PF00464_consen 257 EIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLV 335 (399)
T ss_dssp EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEE
T ss_pred ccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEE
Confidence 000178888887754332 2223233344444543223445778888899999999999987 6665444455788888
Q ss_pred EeccccccCCCChHHHHHHHHHhcCeEEec----CCCcC-CCCeEEEEeec------ChHHHHHHHHH
Q 042445 178 KLNYSLLEGINSDMEFALKLAKEESVIVLP----GITVG-LKDWLRITFAV------EPSALENGLGR 234 (246)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~ll~~~gi~v~p----g~~f~-~~~~iRls~~~------~~~~l~~~~~~ 234 (246)
++....+ +...+.+.|.+.||.+.. +..-. .+..||++... .++++++..+.
T Consensus 336 d~~~~~~-----~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~ 398 (399)
T PF00464_consen 336 DLRSFGI-----DGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL 398 (399)
T ss_dssp EGGGGTS------HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred Eeccccc-----chHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence 8865422 566678899999999854 33111 15789998652 56666666554
No 330
>PLN02271 serine hydroxymethyltransferase
Probab=99.02 E-value=5.2e-08 Score=84.87 Aligned_cols=211 Identities=10% Similarity=0.002 Sum_probs=131.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCC-ccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPF-VSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++..-.|| ..++ ++++.++|+++|+++++|.++......+..+ .++.. --++.+|..|.+.+| |-|.
T Consensus 303 I~g~Sayp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~-----aDvvt~TTHKtLrGP--rGG~ 370 (586)
T PLN02271 303 ICGGSSYP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDY-----CDIVTSTTHKSLRGP--RGGI 370 (586)
T ss_pred EECchhcc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcC-----CcEEEeCCcccCCCC--CceE
Confidence 44333556 3444 7888999999999999999999665543322 12221 228899999997544 3377
Q ss_pred EEeeCCCC------------CcchhhHHHHHHHHhhhcC--CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 042445 91 LVTSDPNG------------ILQDSGIVDSIKIFLNISS--DPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDR 156 (246)
Q Consensus 91 i~~~~~~~------------~~~~~~~~~~l~~~~~~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (246)
+...+... -..++++.+++...-.+.. ++..-..++.+.++.........+..++..+|.+.|.+.
T Consensus 371 I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~ 450 (586)
T PLN02271 371 IFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASA 450 (586)
T ss_pred EEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 77754100 0000135566655532222 322223444445555333223377888889999999999
Q ss_pred hhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcC-----CCCeEEEEee------cCh
Q 042445 157 LKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVG-----LKDWLRITFA------VEP 225 (246)
Q Consensus 157 L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~-----~~~~iRls~~------~~~ 225 (246)
|.+. |+..+........+++++....+ +-..+.+.|.+.||.+.--.-++ .++.||+... ..+
T Consensus 451 L~~~-G~~vv~ggTdnHlvLvDl~~~g~-----~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e 524 (586)
T PLN02271 451 LLRR-KCRLVTGGTDNHLLLWDLTTLGL-----TGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLE 524 (586)
T ss_pred HHHC-CCeEeeCCCCcceeeecCcccCC-----CHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCc
Confidence 9876 66644444456788877755322 55777889999999885422221 1689999754 267
Q ss_pred HHHHHHHHHHHHHHH
Q 042445 226 SALENGLGRMKAFYD 240 (246)
Q Consensus 226 ~~l~~~~~~l~~~~~ 240 (246)
+++++..+.|.++++
T Consensus 525 ~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 525 SDFETIADFLLRAAQ 539 (586)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889998888888876
No 331
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.02 E-value=2.3e-08 Score=84.44 Aligned_cols=192 Identities=16% Similarity=0.109 Sum_probs=123.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
.+++-.|.||+.++ ++++.||+++++|-+.+..... ..+..+ + +.+.|.-|.||.+| +|.+
T Consensus 143 ~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs~g~~~----idv~~~---~--~~~ss~~K~lGP~G--~g~l 203 (355)
T cd00611 143 HYCSNETIHGVEFD--------EVPDTGGVPLVADMSSNILSRP----IDVSKF---G--VIYAGAQKNLGPAG--VTVV 203 (355)
T ss_pred EEeCCcccccEEcc--------eecccCCCeEEEEccccccCCC----CCHHHh---C--EEEeecccccCCCc--eEEE
Confidence 55566689999743 3445599999999988753321 122222 2 45566789998777 7888
Q ss_pred EeeCCCCCcchhhHHHHHHHH-----------h--hhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHh
Q 042445 92 VTSDPNGILQDSGIVDSIKIF-----------L--NISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~-----------~--~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L 157 (246)
++++ ++++++... . ....++|....+++.++++.-.+. -++.+.++.++..+.+.+.|
T Consensus 204 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l 275 (355)
T cd00611 204 IVRK--------DLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTI 275 (355)
T ss_pred EECH--------HHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 8887 666543321 0 012255666777777777753344 48888999999999999999
Q ss_pred hcCCCCc-cccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHH
Q 042445 158 KEIPCIT-CPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGL 232 (246)
Q Consensus 158 ~~~~~~~-~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~ 232 (246)
++++|+. ....+ ..+..+.+.++... ..+.....+.+.|+.+.++.. ..+.+|+|+.. +.+++++++
T Consensus 276 ~~~~gl~~~~~~~~~rs~~vvsf~~~~~~------l~~~~~~~~~r~G~~~~~~~~--~~g~vR~S~~~~nt~edi~~l~ 347 (355)
T cd00611 276 DNSNGFYRGPVDKRARSRMNVPFRLGKEE------LEKEFLKEAEAAGMIGLKGHR--SVGGIRASIYNALSLEGVQALA 347 (355)
T ss_pred HhCccccccCCCHHHcCceEEEEEcCChh------hhHHHHHHHHHCCCcccCCCc--ccCeEEEEccCCCCHHHHHHHH
Confidence 9997752 11111 22233444443210 113333466789997655554 24789999996 899999998
Q ss_pred HHHHHH
Q 042445 233 GRMKAF 238 (246)
Q Consensus 233 ~~l~~~ 238 (246)
+.|+++
T Consensus 348 ~al~~~ 353 (355)
T cd00611 348 DFMKEF 353 (355)
T ss_pred HHHHHH
Confidence 888774
No 332
>PRK04311 selenocysteine synthase; Provisional
Probab=98.98 E-value=5.7e-08 Score=84.31 Aligned_cols=220 Identities=15% Similarity=0.058 Sum_probs=127.0
Q ss_pred hhhhhhhccc----cccCCcCCC--ccCCChhhHHHHHHHHHHcCCEEEEccccCCcc----cCCCCCccccccCCcccE
Q 042445 2 ELINQDITRE----FSDFQVFHV--GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA----FGNTPFVSMGVFGSIVPL 71 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPt--G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~----~~~~~~~~~~~~~~~~~~ 71 (246)
+.+++.++++ +..+++||+ |.. ..-++++|+++|++||+++++|...+.+. ++-.....+......+--
T Consensus 207 ~dle~aI~~~TklV~~vh~sN~~i~G~~-~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaD 285 (464)
T PRK04311 207 RDYEQAINENTALLLKVHTSNYRIEGFT-KEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVD 285 (464)
T ss_pred HHHHHhcCccCeEEEEEcCCCccccccC-CcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCc
Confidence 3456666654 778889994 422 22359999999999999999999543221 110001111111112233
Q ss_pred EEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhc---hH--------HHH
Q 042445 72 LTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKT---EE--------EFF 139 (246)
Q Consensus 72 i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~---~~--------~~~ 139 (246)
+++.|.+|.+++|. .|++++.+ +++++++.. ..-...+......+....+... .+ .-+
T Consensus 286 iv~fSg~K~LgGp~--~G~i~g~~--------~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l 355 (464)
T PRK04311 286 LVTFSGDKLLGGPQ--AGIIVGKK--------ELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLL 355 (464)
T ss_pred EEEecCcccccCCc--eEEEEEcH--------HHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHh
Confidence 88999999987774 79999987 888887742 1111244555555555555411 11 224
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC--CCc-cccC----------CCCc-eEEEEEeccccccCCCChHHHHHHHHHhcCeEE
Q 042445 140 SKIIDILRETADKCCDRLKEIP--CIT-CPKK----------PEGS-MFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 205 (246)
Q Consensus 140 ~~~~~~~~~~~~~l~~~L~~~~--~~~-~~~~----------~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 205 (246)
....+.++++++.+.+.|+..+ ++. .+.. |.-. ...-+.++... -+...+.+.|++....|
T Consensus 356 ~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~-----~~~~~l~~~lr~~~~~i 430 (464)
T PRK04311 356 TRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKD-----RSLEALAARLRLLPPPV 430 (464)
T ss_pred cCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCC-----CCHHHHHHHHhcCCCCE
Confidence 4445677788999999997743 221 1111 1111 11222233221 14566677787755433
Q ss_pred ecCCCcCCCCeEEEEeec-ChHHHHHHHHHHHHHHH
Q 042445 206 LPGITVGLKDWLRITFAV-EPSALENGLGRMKAFYD 240 (246)
Q Consensus 206 ~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l~~~~~ 240 (246)
..- -.++.+.+-+.. .+++++..+++|.+.+.
T Consensus 431 ~~r---~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 431 IGR---IEDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred EEE---EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 321 126777788775 88888888888887753
No 333
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=98.94 E-value=2.2e-07 Score=80.49 Aligned_cols=211 Identities=15% Similarity=0.168 Sum_probs=112.0
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
+.+++.++++ +++ ||+|.. .++++|.++|+++|+++|+|++|+.+. +.+... ..++. +.+.|
T Consensus 150 ~~le~~i~~~tkaVi~~---~~~G~p---~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~---G~~gd----~~~fS 216 (438)
T PRK15407 150 SLLEAAVSPKTKAIMIA---HTLGNP---FDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMT---GTFGD----IATLS 216 (438)
T ss_pred HHHHHHcCcCCeEEEEe---CCCCCh---hhHHHHHHHHHHCCCEEEEECccchhhhcCCeee---eccCc----eEEEe
Confidence 3455556554 333 356654 358999999999999999999998654 343322 22221 34445
Q ss_pred c--ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcCC------------------------------------
Q 042445 77 I--SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISSD------------------------------------ 118 (246)
Q Consensus 77 ~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------------ 118 (246)
| +|.+.+ | .-|+++++++ ++.++++.....+..
T Consensus 217 f~~~k~~~~-g-eGG~l~t~d~-------~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 287 (438)
T PRK15407 217 FYPAHHITM-G-EGGAVFTNDP-------LLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLG 287 (438)
T ss_pred CCCCCCccc-c-CceEEEECCH-------HHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccc
Confidence 5 465543 2 2389988874 666655554332110
Q ss_pred CC-chHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCC-CccccCCCCc---eEE-EEEeccccccCCCChHH
Q 042445 119 PA-TFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPC-ITCPKKPEGS---MFV-MVKLNYSLLEGINSDME 192 (246)
Q Consensus 119 ~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~~~g---~~~-~~~~~~~~~~~~~~~~~ 192 (246)
.| .++...++-.+. .-+.+++..+.-+++.+.+.+.|..+++ +.....+.+. ++. .+.++... + -+.+
T Consensus 288 ~n~rmsel~AAig~~--qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~--~~Rd 361 (438)
T PRK15407 288 YNLKITDMQAAIGLA--QLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDA--G--FTRV 361 (438)
T ss_pred cccCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcC--C--CCHH
Confidence 00 011111111111 2234555556566667777777777654 2211222222 222 23343211 1 1355
Q ss_pred HHHHHHHhcCeEEecCCCcC-----------------C-------CCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445 193 FALKLAKEESVIVLPGITVG-----------------L-------KDWLRITFAV--EPSALENGLGRMKAFYD 240 (246)
Q Consensus 193 ~~~~ll~~~gi~v~pg~~f~-----------------~-------~~~iRls~~~--~~~~l~~~~~~l~~~~~ 240 (246)
.+.+.|+++||...+..... . .+.+-+-+.. ++++++..++.|.++++
T Consensus 362 ~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 362 ELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred HHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 66677889999776432100 0 1223333332 78889999999988775
No 334
>PLN02880 tyrosine decarboxylase
Probab=98.90 E-value=1.3e-07 Score=82.98 Aligned_cols=219 Identities=11% Similarity=-0.012 Sum_probs=124.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+.+-..-+||.+-+ +++|.++|++||+|+.+|-+|+++......+. .+..+..- --+..++.|.+ +.-..+|.
T Consensus 244 vataGTT~~GaiDp---l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~a--DSit~d~HKwl-~~P~~~g~ 317 (490)
T PLN02880 244 CATVGTTSSTAVDP---LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEA--DSFNMNAHKWF-LTNFDCSL 317 (490)
T ss_pred EEecCCCcCcccCc---HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhc--CEEEECchhhc-CCCccEEE
Confidence 44455568888766 89999999999999999999998754321111 11222111 14566789995 66678899
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhhh-cC-----------------CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLNI-SS-----------------DPATFIQGAVPQILEKTEEEFFSKIIDILRETADK 152 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~~-~~-----------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (246)
++..+.. .+...+.....+ .. .........+...+.....+.+.+..+..-+.++.
T Consensus 318 llvr~~~------~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~ 391 (490)
T PLN02880 318 LWVKDRN------ALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKE 391 (490)
T ss_pred EEEeCHH------HHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 9987631 222333221111 00 00001111111123332334455555555688888
Q ss_pred HHHHhhcCCCCccccCCCCceEEEEEeccccccC--CCC-hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChH
Q 042445 153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG--INS-DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPS 226 (246)
Q Consensus 153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~ 226 (246)
+.+.|++.+++..+.+|..+ .+.++++...... ... +.+...++..+..+.+.+ ..+....++|+++.. +++
T Consensus 392 ~~~~l~~~~~~el~~~~~~~-iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~-t~~~g~~~lR~~~~n~~tt~~ 469 (490)
T PLN02880 392 FEQLVAQDSRFEVVTPRIFS-LVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISH-TVLSGKYVLRFAVGAPLTEER 469 (490)
T ss_pred HHHHHhcCCCEEEecCCceE-EEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEE-EEECCEEEEEEEecCCCCCHH
Confidence 88899888888755555533 4445554321100 000 123334444344555544 444447799999984 678
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 042445 227 ALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 227 ~l~~~~~~l~~~~~~~~~ 244 (246)
+++.+++.|.+..+++..
T Consensus 470 di~~~~~~i~~~~~~~~~ 487 (490)
T PLN02880 470 HVTAAWKVLQDEASKLLG 487 (490)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988777543
No 335
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.90 E-value=7.6e-07 Score=74.63 Aligned_cols=208 Identities=21% Similarity=0.233 Sum_probs=122.4
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
+.++++|+++ ++. .--|... ++++|.++|++||++||+|-+++..+ |.|+...+ ++. +.+.|
T Consensus 113 ~~ie~aIt~~tKAIipV---hl~G~~~---dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt---~Gd----~~~fS 179 (374)
T COG0399 113 DLIEAAITPRTKAIIPV---HLAGQPC---DMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGS---FGD----IGAFS 179 (374)
T ss_pred HHHHHHcccCCeEEEEe---hhccCCC---CHHHHHHHHHHcCCeEEEEcchhccCeecCccccc---ccc----eEEEE
Confidence 5678888875 332 2344443 58999999999999999999999554 55543322 222 33444
Q ss_pred c--ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhcC-----------------CCCchHHHHHHHHHhhchHH
Q 042445 77 I--SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNISS-----------------DPATFIQGAVPQILEKTEEE 137 (246)
Q Consensus 77 ~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~q~~~~~~l~~~~~~ 137 (246)
| +|.++.. --|.++++++ ++.++++..+.-+. .++.+..+.... .-+
T Consensus 180 F~~~K~ittg--EGGav~tnd~-------ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~-----QL~ 245 (374)
T COG0399 180 FHATKNLTTG--EGGAVVTNDE-------ELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLA-----QLE 245 (374)
T ss_pred ecCCCCcccc--CceEEEeCCH-------HHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHH-----HHH
Confidence 4 6886655 3477888775 88888876643221 112222222211 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc---eEEE-EEeccccccCCCChHHHHHHHHHhcCe----EEecCC
Q 042445 138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS---MFVM-VKLNYSLLEGINSDMEFALKLAKEESV----IVLPGI 209 (246)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g---~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gi----~v~pg~ 209 (246)
.+++..++-++..+...+.|++++++.....+.+. ++++ +.++.. + .+.+.+...|++.|| ...|..
T Consensus 246 ~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~---~--~~R~~l~~~L~~~gi~~~~~~~P~~ 320 (374)
T COG0399 246 RLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE---G--ISRDALMESLKEAGVGAVVYFRPLH 320 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC---C--CCHHHHHHHHHhCCCCceEEeeccc
Confidence 46666666666777777788877655433333333 2222 233332 1 256677778888854 444532
Q ss_pred CcC----------C---------CCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 210 TVG----------L---------KDWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 210 ~f~----------~---------~~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
.+. . .+.+.+-+.. +++++++.++.|.+++.+
T Consensus 321 ~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 321 LQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred cchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 220 0 3556665553 889999999999888753
No 336
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=98.90 E-value=5e-07 Score=72.00 Aligned_cols=207 Identities=12% Similarity=0.105 Sum_probs=141.3
Q ss_pred CCccCCCh-hhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCC
Q 042445 19 HVGSGFSG-SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPN 97 (246)
Q Consensus 19 PtG~~~~~-~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~ 97 (246)
=.|+++|+ ...+++.+..+.+|-+.|.||+..+|..-|+.+.+....+ -+.-+-+++|- .+.|.+++.+++.+
T Consensus 221 CGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~---fiPDIVtmgKp-mGNGhPVa~Vattk-- 294 (452)
T KOG1403|consen 221 CGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYN---FIPDIVTMGKP-MGNGHPVAAVATTK-- 294 (452)
T ss_pred cCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhc---cccchheeccc-CCCCCeeeEEeccH--
Confidence 34556555 6889999999999999999999999887666554443332 33345567799 57899999999998
Q ss_pred CCcchhhHHHHHHHH---hhhcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc-CCCCccccCCCCce
Q 042445 98 GILQDSGIVDSIKIF---LNISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE-IPCITCPKKPEGSM 173 (246)
Q Consensus 98 ~~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~g~ 173 (246)
++.+.+... ...+++.||++.++..+.++.-.++.+........+..+.+...++. .+-+.. ...-|+
T Consensus 295 ------eIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGD--vRGvGL 366 (452)
T KOG1403|consen 295 ------EIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGD--VRGVGL 366 (452)
T ss_pred ------HHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceec--cccceE
Confidence 888888763 22355899999999999998655677777777777777777777764 432321 224588
Q ss_pred EEEEEeccccccCCCC---hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 174 FVMVKLNYSLLEGINS---DMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 174 ~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
|+-+++-+......++ ....+.++-+.++|++..-. +.++-+.+-... ++++.++.+..|.+.+.-
T Consensus 367 FiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaDG--Ph~NilKiKPPmCFneena~e~v~~ld~iLT~ 437 (452)
T KOG1403|consen 367 FIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSADG--PHRNILKIKPPMCFNEENADEFVLGLDEILTV 437 (452)
T ss_pred EEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecCC--CCCceeecCCCcccChhhHHHHHHHHHHHHHH
Confidence 8888875443322222 33456666777788776422 115666664432 667677777777666653
No 337
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=98.89 E-value=2.4e-07 Score=79.82 Aligned_cols=225 Identities=13% Similarity=0.084 Sum_probs=130.1
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHc------CCEEEEccccCCccc---CCCCCccccccCCc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKL------GIMVIANEVYGHLAF---GNTPFVSMGVFGSI 68 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~------~~~ii~De~y~~~~~---~~~~~~~~~~~~~~ 68 (246)
+.+++.+.+. +.+..||.||.+-| +++|.++|+++ |+++.+|-+|+++.. -+.....+. ..
T Consensus 177 ~~L~~~i~~~t~lV~~t~g~t~tG~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~---~~ 250 (431)
T TIGR01788 177 EQVVEAVDENTIGVVCILGTTYTGEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR---LP 250 (431)
T ss_pred HHHHHHHhhCCeEEEEEeCCCCCcccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC---CC
Confidence 4456666554 67778999999988 88888899999 999999999996542 111111111 11
Q ss_pred ccEEEEccccccc-ccCCceEEEEEeeCCCCCcchhhHHHHHHH---Hh-----hhcCCCCchHHHHHHHHHh--hchHH
Q 042445 69 VPLLTLGSISKRG-IVPGLRLGWLVTSDPNGILQDSGIVDSIKI---FL-----NISSDPATFIQGAVPQILE--KTEEE 137 (246)
Q Consensus 69 ~~~i~~~s~sK~~-~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~---~~-----~~~~~~~~~~q~~~~~~l~--~~~~~ 137 (246)
.---+.-|..|.+ +.. .+|.++..+.. .+.+.+.. +. +.+...+...-.++..++. .....
T Consensus 251 ~~DSis~s~HK~~~~P~--g~G~l~~r~~~------~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~ 322 (431)
T TIGR01788 251 RVKSINVSGHKYGLVYP--GVGWVIWRDEE------ALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGRE 322 (431)
T ss_pred CceEEEECchhccCCCC--CcEEEEEeChH------HcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHH
Confidence 1123556788984 444 48888887621 12222211 10 0111112222122222332 11245
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCC---cCCC
Q 042445 138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGIT---VGLK 214 (246)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~---f~~~ 214 (246)
-+++..+...+..+.+.+.|++++++..+.++.....+.++++...-.+. +...+.+.|.++|+.+..... ....
T Consensus 323 G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~--~~~~l~~~L~~~G~~~~~~~~p~~~~~~ 400 (431)
T TIGR01788 323 GYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGY--TLYDLSHRLRERGWIVPAYTLPKNAEDI 400 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCc--CHHHHHHHHHHCCCcccCCCCCCccCCe
Confidence 57777788888999999999998888744331223334444543110011 344456677889987533222 1123
Q ss_pred CeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 215 DWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
-.+|+++.. +.+.++..++.|.+++..+
T Consensus 401 ~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 401 VVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 568999863 7788888888888887654
No 338
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.89 E-value=2.6e-07 Score=76.32 Aligned_cols=194 Identities=15% Similarity=0.099 Sum_probs=130.7
Q ss_pred hHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHH
Q 042445 28 FVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIV 106 (246)
Q Consensus 28 ~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~ 106 (246)
+++++.++|.+.|+++++|-+|- ++.-+|..+.|+.. --|+.+|..|.|.+| |-|.|++.+. ++.
T Consensus 182 d~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-----AdvVTtTTHKTlrGP--rGG~Il~~~e-------el~ 247 (413)
T COG0112 182 DFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-----ADVVTTTTHKTLRGP--RGGIILTNDE-------ELA 247 (413)
T ss_pred CHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-----cceEeCCcccCCCCC--CceEEEeccH-------HHH
Confidence 58899999999999999999887 45555543434333 228889999996544 5566777653 888
Q ss_pred HHHHHHhhhcCCCCchHHHHH--HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccc
Q 042445 107 DSIKIFLNISSDPATFIQGAV--PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLL 184 (246)
Q Consensus 107 ~~l~~~~~~~~~~~~~~q~~~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~ 184 (246)
+++...-.++.-.+|..-..+ +.++.+..+...++..++.-+|++.|.+.|.+. |++.+...-....+.+++....+
T Consensus 248 kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~~~ 326 (413)
T COG0112 248 KKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSKGL 326 (413)
T ss_pred HHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccCCC
Confidence 888876444333344433333 334443333445777778889999999999886 67643333335667777763222
Q ss_pred cCCCChHHHHHHHHHhcCeEEec-CCCcCC-----CCeEEEEee------cChHHHHHHHHHHHHHHHH
Q 042445 185 EGINSDMEFALKLAKEESVIVLP-GITVGL-----KDWLRITFA------VEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 185 ~~~~~~~~~~~~ll~~~gi~v~p-g~~f~~-----~~~iRls~~------~~~~~l~~~~~~l~~~~~~ 241 (246)
+-+.+..+|.+.||.+.- +-.|.. +..||+... ..++++++..+.|.++++.
T Consensus 327 -----~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 327 -----TGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred -----CHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 566778889999998864 222221 789999754 2678899999999888865
No 339
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.88 E-value=2.9e-07 Score=85.96 Aligned_cols=219 Identities=11% Similarity=0.054 Sum_probs=133.7
Q ss_pred hhhhhhhcc---c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445 2 ELINQDITR---E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL 74 (246)
Q Consensus 2 e~~~~~~~~---~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (246)
|.+++.+++ + ++++|||-+|...+ +++|.++|+++|+.+++|-++...... ......++ --+++
T Consensus 654 e~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a~~~---l~~p~~~G---aD~~~ 724 (993)
T PLN02414 654 EELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVYMDGANMNAQVG---LTSPGFIG---ADVCH 724 (993)
T ss_pred HHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEEEEecCHHhccC---cCCccccC---CCEEE
Confidence 556666763 2 78899888888755 899999999999999999988632211 11111222 22777
Q ss_pred ccccccccc----CCceEEEEEeeCCCCCcchhhHHHHHHHH------------hh--hcCCCC--c----hHHHHHHHH
Q 042445 75 GSISKRGIV----PGLRLGWLVTSDPNGILQDSGIVDSIKIF------------LN--ISSDPA--T----FIQGAVPQI 130 (246)
Q Consensus 75 ~s~sK~~~~----~g~r~G~i~~~~~~~~~~~~~~~~~l~~~------------~~--~~~~~~--~----~~q~~~~~~ 130 (246)
+|..|.|+. .|=.+|++.+.+ ++...+-.. .. .+ ..+ + ....++..+
T Consensus 725 ~s~HK~f~~P~G~GGPg~G~l~~~~--------~L~p~lPg~~v~~~~~~~~r~~~s~iG-t~~~a~~g~al~l~~A~~y 795 (993)
T PLN02414 725 LNLHKTFCIPHGGGGPGMGPIGVKK--------HLAPFLPSHPVVPTGGIPRPEKTQPLG-TISAAPWGSALILPISYTY 795 (993)
T ss_pred ecCCccCCcCcccCCCCeeeEEEch--------hhcccCCCCccccCCCcccccCCCCcC-CccchhhhhHHHHHHHHHH
Confidence 888886552 234488887776 433333210 00 11 111 1 223334445
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE--EEEEeccccccC--CCChHHHHHHHHHhcCeEEe
Q 042445 131 LEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF--VMVKLNYSLLEG--INSDMEFALKLAKEESVIVL 206 (246)
Q Consensus 131 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~ 206 (246)
+.....+.+.+..+....++.++.+.|++..++. +..|.+.+| +.+.++ .+++ ..+..+. .+.|.++||...
T Consensus 796 i~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~-~~~~~~~~~hEfv~~~~--~l~~~~g~~~~di-~krL~d~Gihap 871 (993)
T PLN02414 796 IAMMGSEGLTDASKIAILNANYMAKRLEGHYPVL-FRGKNGTCAHEFIIDLR--PFKNTAGIEPEDV-AKRLMDYGFHAP 871 (993)
T ss_pred HHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCeeeeEEEecc--ccccccCCCHHHH-HHHHHHcCcEEe
Confidence 5544467788888888999999999998743444 333333311 112232 1111 1134455 445559999754
Q ss_pred cCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 207 PGITVGLKDWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 207 pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
- ..|...+++|++... +.+++++.++.|.+..++..
T Consensus 872 t-~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~ 909 (993)
T PLN02414 872 T-MSWPVPGTLMIEPTESESKAELDRFCDALISIREEIA 909 (993)
T ss_pred e-eccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 3 335558899999994 78899999999988876654
No 340
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=98.85 E-value=1.4e-08 Score=85.13 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=73.1
Q ss_pred cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445 22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ 101 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~ 101 (246)
..++++.+++|.++|++||+++|.||++.++...|..+ ....++-...++ +++|.++. |+.+|.+++++
T Consensus 193 ~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~-a~~~~gv~PDiv---~~gK~l~g-G~p~sav~~~~------ 261 (339)
T PF00202_consen 193 IPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFF-ASEHYGVDPDIV---TFGKGLGG-GLPISAVLGSE------ 261 (339)
T ss_dssp BEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSS-GHHHHTSSSSEE---EEEGGGGT-TSSEEEEEEEH------
T ss_pred cccccchhhehcccccccccceecccccccccccCCcc-ceecccccCccc---ccccchhh-hhhcccccccc------
Confidence 35577899999999999999999999999997776543 333333332333 35699654 59999999998
Q ss_pred hhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch
Q 042445 102 DSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE 135 (246)
Q Consensus 102 ~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~ 135 (246)
++.+.+... ...+++.+|++..++.+.|+...
T Consensus 262 --~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~ 294 (339)
T PF00202_consen 262 --EIMEAFQPGSHGSTFGGNPLSCAAALATLEILE 294 (339)
T ss_dssp --HHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHH
T ss_pred --hhhccccccccccccccchHhhhhhhhHHHhhc
Confidence 888777443 33455789999999999988543
No 341
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.5e-08 Score=80.35 Aligned_cols=204 Identities=16% Similarity=0.148 Sum_probs=126.1
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC--CCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG--NTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~ 95 (246)
-+||...+ +++|+++..||...+|.||.|+....+ |++.......+..+--++++|++-+++..| ||+++..
T Consensus 244 ~N~g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G---gFc~G~~ 317 (467)
T KOG1358|consen 244 ANTGDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG---GFCAGKS 317 (467)
T ss_pred cCCCcccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC---ceeecce
Confidence 36778777 899999999999999999999977765 355555555555555688999999987777 8888853
Q ss_pred CCCCcchhhHHHHHHHHh--hhcCC--CCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC
Q 042445 96 PNGILQDSGIVDSIKIFL--NISSD--PATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEG 171 (246)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~--~~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 171 (246)
.+-...+.. .+.++ .+|....++..++. ...+-....+.++.....+...|....++.....+.
T Consensus 318 ---------~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~--i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~- 385 (467)
T KOG1358|consen 318 ---------FIADHQRLSGSGYCFSASLPPYLAGAAIKAIL--IEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPE- 385 (467)
T ss_pred ---------eeEeeeeccccceeeeccCchhhhhhHHHHHH--HHhhCcchhhhhhccccccchhhhcCCceEEecCcC-
Confidence 222222222 22223 33333333333333 233334455667777788888887755555323333
Q ss_pred ceEEEEEeccccccCCCChH----HHHHHHHHhcCeEEecCCCc------CCCCeEEEEeec--ChHHHHHHHHHHHHHH
Q 042445 172 SMFVMVKLNYSLLEGINSDM----EFALKLAKEESVIVLPGITV------GLKDWLRITFAV--EPSALENGLGRMKAFY 239 (246)
Q Consensus 172 g~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~gi~v~pg~~f------~~~~~iRls~~~--~~~~l~~~~~~l~~~~ 239 (246)
+..+.+.+..... .-.++. +.+...+ ..|+.+....+. ..+..+|+++.. ++++++++.+.|++..
T Consensus 386 SPi~hl~l~~~~~-s~e~e~~lL~eivd~~i-~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~ 463 (467)
T KOG1358|consen 386 SPIIHLQLERSYG-SREKEEKLLEEIVDKCI-AEGVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVA 463 (467)
T ss_pred Cceeeeeeccccc-chHHHHHHHHHHHHHHH-hhcceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 3333444554321 000111 2233333 348887765443 226789999995 8999999999998876
Q ss_pred HH
Q 042445 240 DR 241 (246)
Q Consensus 240 ~~ 241 (246)
..
T Consensus 464 ~~ 465 (467)
T KOG1358|consen 464 SA 465 (467)
T ss_pred Hh
Confidence 44
No 342
>PRK02769 histidine decarboxylase; Provisional
Probab=98.76 E-value=1.7e-06 Score=73.59 Aligned_cols=193 Identities=13% Similarity=0.088 Sum_probs=120.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcC---CEEEEccccCCcccCCC-CCccccccCCcccEEEEcccccccccCCce
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLG---IMVIANEVYGHLAFGNT-PFVSMGVFGSIVPLLTLGSISKRGIVPGLR 87 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~---~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r 87 (246)
+.+..+|+||.+-+ +++|.++|+++| +++++|-+|+.+...-. ....+. +.. .--.+..|..|.+++| ..
T Consensus 165 v~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d-~~~-~vDsis~s~HK~~~~P-~g 238 (380)
T PRK02769 165 FANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFS-FAD-GIDSIAISGHKFIGSP-MP 238 (380)
T ss_pred EEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCC-ccC-CCCEEEECCcccCCCC-CC
Confidence 67888999999977 888889999998 69999999997654210 000111 111 1225566788996533 46
Q ss_pred EEEEEeeCCCCCcchhhHHHHHHHHhh--------hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 042445 88 LGWLVTSDPNGILQDSGIVDSIKIFLN--------ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKE 159 (246)
Q Consensus 88 ~G~i~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 159 (246)
+|.++..+ +..+.+..... ...+-+.....++...|......-.++..+...+..+++.+.|++
T Consensus 239 ~G~l~~r~--------~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~ 310 (380)
T PRK02769 239 CGIVLAKK--------KYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA 310 (380)
T ss_pred cEEEEEeh--------hhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89998887 55554421111 111223344555555665444566788888888999999999987
Q ss_pred CCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHH
Q 042445 160 IPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKA 237 (246)
Q Consensus 160 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~ 237 (246)
. |+..+..|. .+.+. |+.. +.+. . +|..+.+- ++++|+.+.. +.+.+++.++.|..
T Consensus 311 ~-g~~~~~~p~-~~~v~--f~~~-------~~~~----~--~~w~l~~~-----~~~~hi~~~~~~~~~~~~~f~~dl~~ 368 (380)
T PRK02769 311 N-GIPAWRNPN-SITVV--FPCP-------SERI----W--KKWHLATS-----GNQAHIITMPHHNKQQIDSLIDELIF 368 (380)
T ss_pred C-CCEEEcCCC-ceEEE--EcCC-------CHHH----H--hCeeEccc-----CCEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5 676566665 33333 4432 2221 1 34333321 3588999885 77778888877776
Q ss_pred HHH
Q 042445 238 FYD 240 (246)
Q Consensus 238 ~~~ 240 (246)
.+.
T Consensus 369 ~~~ 371 (380)
T PRK02769 369 DLK 371 (380)
T ss_pred HHh
Confidence 654
No 343
>PLN02590 probable tyrosine decarboxylase
Probab=98.76 E-value=1.7e-06 Score=76.41 Aligned_cols=219 Identities=14% Similarity=0.069 Sum_probs=123.8
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+.+-..-+||.+ +.+++|.++|++||+|+.+|-+|+++..-...+. -+..+..- .-+ .-++.|.+ ....-+|.
T Consensus 292 vaTaGTT~tGai---Dpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~A-DSi-t~D~HK~l-~~p~~cg~ 365 (539)
T PLN02590 292 CATVGTTSSAAV---DPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENA-DSF-NMNAHKWL-FANQTCSP 365 (539)
T ss_pred EEEeCCCCCccc---CCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccC-CEE-EECchhhc-CcCcCEEE
Confidence 344444566666 5699999999999999999999998764321111 11222111 223 33478995 55578898
Q ss_pred EEeeCCCCCcchhhHHHHHHH---Hhhh--------------cC-CCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 042445 91 LVTSDPNGILQDSGIVDSIKI---FLNI--------------SS-DPATFIQGAVPQILEKTEEEFFSKIIDILRETADK 152 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~---~~~~--------------~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (246)
+++.+.. .+.+.+.. +... +. ..-.+....+...|.....+-+++..+..-+.++.
T Consensus 366 llvr~~~------~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~ 439 (539)
T PLN02590 366 LWVKDRY------SLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKH 439 (539)
T ss_pred EEecCHH------HHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887731 22222211 1100 00 01112222223333332345677777777888999
Q ss_pred HHHHhhcCCCCccccCCCCceEEEEEeccccccC--CCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHH
Q 042445 153 CCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG--INSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSA 227 (246)
Q Consensus 153 l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~ 227 (246)
+.+.|++.+++..+.+|.- ..+++++....... ...-...+.+.+.+.|.............++|+++.. ++++
T Consensus 440 ~~~~l~~~~~fel~~~~~l-~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~d 518 (539)
T PLN02590 440 FEDYVAQDPSFEVVTTRYF-SLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKH 518 (539)
T ss_pred HHHHHhcCCCeEEecCCce-EEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHH
Confidence 9999998888875444442 33334443211000 0001123333444455544443444446789999984 7899
Q ss_pred HHHHHHHHHHHHHHHh
Q 042445 228 LENGLGRMKAFYDRHA 243 (246)
Q Consensus 228 l~~~~~~l~~~~~~~~ 243 (246)
++.+++.|.+...++-
T Consensus 519 v~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 519 VTEAWQIIQKHASKFT 534 (539)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999988876653
No 344
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=98.75 E-value=2.3e-07 Score=77.79 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=62.8
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSI 77 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 77 (246)
+.+++.++++ .+..-||-+|++.| +++|.++|++.|+.+++|-+++-.. -..-+..++.+ ++..|.
T Consensus 172 ~~~~~~i~~~T~lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQavG~----i~vDV~eln~D---~~s~s~ 241 (428)
T KOG1549|consen 172 SKLREAIRSKTRLVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQAVGK----IPVDVQELNAD---FLSISA 241 (428)
T ss_pred HHHHHhcCCCceEEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhhcCC----ccccHHHcCch---heeeec
Confidence 4566777776 55666799999999 8999999999999999999988522 22233334332 667778
Q ss_pred ccccccCCceEEEEEeeC
Q 042445 78 SKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 78 sK~~~~~g~r~G~i~~~~ 95 (246)
.|.||++| +|++.+..
T Consensus 242 HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 242 HKIYGPPG--IGALYVRR 257 (428)
T ss_pred ccccCCCc--ceEEEEcc
Confidence 89999999 99999875
No 345
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.74 E-value=1.1e-06 Score=81.01 Aligned_cols=221 Identities=9% Similarity=0.008 Sum_probs=123.7
Q ss_pred hhhhhhhc---cc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445 2 ELINQDIT---RE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL 74 (246)
Q Consensus 2 e~~~~~~~---~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (246)
+.+++.+. .+ ++++| |-.|. + .+.+++|+++++++|+++++|-++..... .......++ --++.
T Consensus 629 e~L~a~I~~~~~~laaVmiT~P-nt~Gv-~-e~~V~eI~~iah~~Galv~vDgA~~~a~~---~l~~Pg~~G---ADi~~ 699 (954)
T PRK12566 629 DDLKAKAAAAGDRLSCLMITYP-STHGV-Y-EEGIREICEVVHQHGGQVYMDGANLNAQV---GLARPADIG---ADVSH 699 (954)
T ss_pred HHHHHHhhccCCCEEEEEEEec-CcCce-e-cchHHHHHHHHHHcCCEEEEEeeChhhcc---CCCChhhcC---CCEEE
Confidence 45566655 23 45566 44443 3 46699999999999999999998752111 111112222 23888
Q ss_pred ccccccccc----CCceEEEEEeeCCCCCcchhhHHHHHHHHh-----------hhcC---CCCchHHHHHHHHHhhchH
Q 042445 75 GSISKRGIV----PGLRLGWLVTSDPNGILQDSGIVDSIKIFL-----------NISS---DPATFIQGAVPQILEKTEE 136 (246)
Q Consensus 75 ~s~sK~~~~----~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~-----------~~~~---~~~~~~q~~~~~~l~~~~~ 136 (246)
+++.|.|+. .|.-+|.+.+.+ .+...+.... ...+ ..+.....++..++.....
T Consensus 700 ~s~HKtf~~P~G~GGP~vG~iav~~--------~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~ 771 (954)
T PRK12566 700 MNLHKTFCIPHGGGGPGMGPIGVRA--------HLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGP 771 (954)
T ss_pred ecCCcccCcCccCCCCccchhhhhh--------hhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCH
Confidence 889998752 234456655554 3333333210 0010 1111122333344443334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccC--CCChHHHHHHHHHhcCeEEecCCCcCCC
Q 042445 137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEG--INSDMEFALKLAKEESVIVLPGITVGLK 214 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 214 (246)
+ +.+....-..+++++.+.|++..++. +..+++.+|--+.+....+++ ..+..+. .+.|.++||...- .+|...
T Consensus 772 e-Lk~aa~~ailnAnYla~rL~~~~~v~-~~~~~~~~~hEfii~~~~l~~~~g~~~~dv-akRL~d~Gihapt-~~fPv~ 847 (954)
T PRK12566 772 Q-LADASEVAILSANYLANQLGGAFPVL-YRGRNERVAHECILDLRPLKAQTGISEEDV-AKRLMDYGFHAPT-MSFPVP 847 (954)
T ss_pred H-HHHHHHHHHHHHHHHHHHhHhhCCCC-cCCCCCCeeeEEEEEccccccccCCCHHHH-HHHHHHCCcEEeE-EeeccC
Confidence 4 77777766788889999997733443 322222322222122111111 0134444 4455599987544 455558
Q ss_pred CeEEEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 215 DWLRITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
+++|++... +.+++++.++.|.+..++..
T Consensus 848 ~~LmIepTE~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 848 GTLMVEPTESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred CEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence 899999994 78889999999988877643
No 346
>PLN02452 phosphoserine transaminase
Probab=98.72 E-value=6.9e-07 Score=75.45 Aligned_cols=189 Identities=16% Similarity=0.144 Sum_probs=121.6
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPN 97 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~ 97 (246)
..||+.+. +++++. ++++|+|-+-+.+.. ...+..+ .+ ...|.-|.+|.+| +|.+++++
T Consensus 156 TstGv~~~--~~~~i~------~~~lvVDa~Ss~g~~----pidv~~~----~v-~~~saqK~lGP~G--l~~v~vr~-- 214 (365)
T PLN02452 156 TIHGVEFK--DYPDVG------NVPLVADMSSNFLSK----PVDVSKY----GV-IYAGAQKNVGPSG--VTIVIIRK-- 214 (365)
T ss_pred CCCcEecC--cccccC------CCeEEEECCccccCc----ccCHHHc----CE-EEEecccccCCCC--eEEEEEcH--
Confidence 47888543 234432 389999987664331 1122222 23 3468999999898 78888887
Q ss_pred CCcchhhHHHHHHHH----h---------hhcCCCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445 98 GILQDSGIVDSIKIF----L---------NISSDPATFIQGAVPQILEKTEEE-FFSKIIDILRETADKCCDRLKEIPCI 163 (246)
Q Consensus 98 ~~~~~~~~~~~l~~~----~---------~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~ 163 (246)
++++++... . ....+++....+++..+|+...+. -++.+.++.+++++.+++.|++.+|+
T Consensus 215 ------~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~ 288 (365)
T PLN02452 215 ------DLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGF 288 (365)
T ss_pred ------HHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 666544321 0 111356677777777777743333 58899999999999999999987676
Q ss_pred -ccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445 164 -TCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF 238 (246)
Q Consensus 164 -~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~ 238 (246)
.....+ ...+.+.+.++.. +..+.+.+.++++|+...+|..- -+.+|+|+-. +.+.++.+++-++++
T Consensus 289 y~~~~~~~~rs~~~vsF~~~~~------~~~~~f~~~~~~~g~~~~~G~r~--~gg~R~s~yna~~~~~v~~L~~~m~~f 360 (365)
T PLN02452 289 YVCPVEKSVRSLMNVPFTLGGS------ELEAEFVKEAAKAGMVQLKGHRS--VGGMRASIYNAMPLAGVEKLVAFMKDF 360 (365)
T ss_pred ccCCCChHHhCCeEEEEEcCCc------hhHHHHHHHHHHCCCcccCCccc--cCceEEECcCCCCHHHHHHHHHHHHHH
Confidence 211221 2445555555543 24455577799999999998864 2349999774 788777777777766
Q ss_pred HHH
Q 042445 239 YDR 241 (246)
Q Consensus 239 ~~~ 241 (246)
-++
T Consensus 361 ~~~ 363 (365)
T PLN02452 361 QAK 363 (365)
T ss_pred HHh
Confidence 544
No 347
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.69 E-value=4.5e-08 Score=73.22 Aligned_cols=73 Identities=14% Similarity=-0.049 Sum_probs=56.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++|+||+|...+. ++|.++|+++|+++|+|++|..+....... ........+++.|++|.++. .++|++
T Consensus 97 ~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~~----~~~~~~~d~~~~s~~K~~~~--~~~G~l 167 (170)
T cd01494 97 VITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPGV----LIPEGGADVVTFSLHKNLGG--EGGGVV 167 (170)
T ss_pred EEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEeccccccccccccc----ccccccCCEEEEEcccccCC--CceEEE
Confidence 888899999998874 888888999999999999999887654221 11122345888899999876 578998
Q ss_pred Ee
Q 042445 92 VT 93 (246)
Q Consensus 92 ~~ 93 (246)
++
T Consensus 168 ~~ 169 (170)
T cd01494 168 IV 169 (170)
T ss_pred Ee
Confidence 76
No 348
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.68 E-value=1.6e-06 Score=75.16 Aligned_cols=215 Identities=15% Similarity=0.047 Sum_probs=116.8
Q ss_pred hhhhhhhccc----cccCCcCCC--ccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC---CCCCcc-ccccCCcccE
Q 042445 2 ELINQDITRE----FSDFQVFHV--GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG---NTPFVS-MGVFGSIVPL 71 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPt--G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~---~~~~~~-~~~~~~~~~~ 71 (246)
+.++++++++ +..+++||+ |.. ...++++|+++|+++|+++++|.....+.-. +-+..+ +......+--
T Consensus 202 ~dle~aI~~~T~lv~~~h~sN~~~~G~~-~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaD 280 (454)
T TIGR00474 202 KDYEDAITENTALLLKVHTSNYRIVGFT-EEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVD 280 (454)
T ss_pred HHHHHhcCcCCEEEEEEccCcccccCCC-CCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCC
Confidence 3455666664 778888995 531 1234999999999999999999753322100 000111 1111111223
Q ss_pred EEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhh---chH--------HHH
Q 042445 72 LTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEK---TEE--------EFF 139 (246)
Q Consensus 72 i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~---~~~--------~~~ 139 (246)
+++.|.+|.+++|. .|++++.+ ++++.++...- -...+......++...+.. +.+ +-+
T Consensus 281 iv~fSg~K~LgGp~--~G~i~g~~--------~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l 350 (454)
T TIGR00474 281 LVTFSGDKLLGGPQ--AGIIVGKK--------ELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRML 350 (454)
T ss_pred EEEecCccccCCCe--EEEEEECH--------HHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHh
Confidence 88899999987773 79999887 77776654310 0113333333343333321 111 223
Q ss_pred HHHHHHHHHHHHHHHHHhhcC--CCCcc-ccCCC----Cc-------eEEEEEeccccccCCCChHHHHHHHHHhcCeEE
Q 042445 140 SKIIDILRETADKCCDRLKEI--PCITC-PKKPE----GS-------MFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 205 (246)
Q Consensus 140 ~~~~~~~~~~~~~l~~~L~~~--~~~~~-~~~~~----~g-------~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 205 (246)
....+.+.++++.+.+.|+.. +++.. +.... || ...-+.+.... -+...+.+.|++....|
T Consensus 351 ~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~-----~~~~~l~~~lr~~~~~i 425 (454)
T TIGR00474 351 TQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDG-----LSAEKLEARLRELPPPI 425 (454)
T ss_pred ccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCC-----CCHHHHHHHHhcCCCCE
Confidence 344556677888888888763 33321 11111 11 11122233221 14556677787776444
Q ss_pred ecCCCcCCCCeEEEEeec-ChHHHHHHHHHH
Q 042445 206 LPGITVGLKDWLRITFAV-EPSALENGLGRM 235 (246)
Q Consensus 206 ~pg~~f~~~~~iRls~~~-~~~~l~~~~~~l 235 (246)
.... .++.+.+-+.. .+++++..++.|
T Consensus 426 i~r~---~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 426 IGRI---EDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred EEEE---ECCEEEEEeCcCCHHHHHHHHHHh
Confidence 3311 26777777775 777777777665
No 349
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.63 E-value=3.7e-06 Score=71.27 Aligned_cols=177 Identities=23% Similarity=0.283 Sum_probs=101.3
Q ss_pred hhhhhhhccc----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcc
Q 042445 2 ELINQDITRE----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGS 76 (246)
Q Consensus 2 e~~~~~~~~~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s 76 (246)
+.+++.++++ +++ +.-|... ++++|.++|+++|++||+|-+++.+. +.+.. +..++ .+.+.|
T Consensus 104 ~~~~~~i~~~t~ai~~~---h~~G~~~---d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~---~G~~g----d~~~fS 170 (363)
T PF01041_consen 104 EALEKAITPKTKAILVV---HLFGNPA---DMDAIRAIARKHGIPLIEDAAQAFGARYKGRP---VGSFG----DIAIFS 170 (363)
T ss_dssp HHHHHHHHTTEEEEEEE----GGGB------HHHHHHHHHHTT-EEEEE-TTTTT-EETTEE---TTSSS----SEEEEE
T ss_pred HHHHHHhccCccEEEEe---cCCCCcc---cHHHHHHHHHHcCCcEEEccccccCceeCCEe---ccCCC----CceEec
Confidence 4456666655 332 4455544 59999999999999999999999755 33321 11222 255666
Q ss_pred c--ccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhhhc------------------CCCCchHHHHHHHHHhhchH
Q 042445 77 I--SKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLNIS------------------SDPATFIQGAVPQILEKTEE 136 (246)
Q Consensus 77 ~--sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~~q~~~~~~l~~~~~ 136 (246)
| +|.+... .-|.++++++ ++.++++.....+ +.++.+..+.+..-|+
T Consensus 171 f~~~K~i~~g--eGG~v~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~---- 237 (363)
T PF01041_consen 171 FHPTKIITTG--EGGAVVTNDP-------ELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLK---- 237 (363)
T ss_dssp SSTTSSS-SS--S-EEEEESTH-------HHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHH----
T ss_pred CCCCCCCcCC--CCeeEEecHH-------HHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHH----
Confidence 6 6886433 2378888774 7777887654321 1234443333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCc-----eEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCC
Q 042445 137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGS-----MFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGI 209 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~ 209 (246)
.+++..+.-+++.+.+.+.|..++++.....+.+. +.+.+.++.... .+.+.+.+.|.+.||.+.+..
T Consensus 238 -~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~----~~rd~l~~~L~~~GI~~~~~~ 310 (363)
T PF01041_consen 238 -RLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL----ADRDELVEALRARGIETRPHY 310 (363)
T ss_dssp -THHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC----STHHHHHHHHHHTTBEEBCST
T ss_pred -HhhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc----chHHHHHHHHHHCCCcccccc
Confidence 46666666678888888899888776432333322 233344543211 145666778889999998865
No 350
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.60 E-value=5.7e-06 Score=77.63 Aligned_cols=211 Identities=14% Similarity=0.070 Sum_probs=116.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc----CCce
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV----PGLR 87 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~g~r 87 (246)
++++|++- |.+ ..++++|+++|+++|+++++|.++...... +.....++. -++..|..|.|+. .|=-
T Consensus 645 ~it~pst~-G~~--e~~I~eI~~i~h~~G~~v~VDgA~~~al~~---l~~pg~~GA---Di~~~s~HK~f~~P~G~GGPg 715 (954)
T PRK05367 645 MITYPSTH-GVF--EETIREICEIVHEHGGQVYLDGANMNAQVG---LARPGDIGA---DVSHLNLHKTFCIPHGGGGPG 715 (954)
T ss_pred EEEcCCCC-eee--cCCHHHHHHHHHHcCCEEEEECcChhhccC---CCChhhcCC---CEEEecCcccCCCCcCCCCCc
Confidence 56666333 433 134999999999999999999998633211 111112222 2777888898642 2233
Q ss_pred EEEEEeeCCCCCcchhhHHHHHHHHh-----h---hcC-CCCchHHHH----HHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445 88 LGWLVTSDPNGILQDSGIVDSIKIFL-----N---ISS-DPATFIQGA----VPQILEKTEEEFFSKIIDILRETADKCC 154 (246)
Q Consensus 88 ~G~i~~~~~~~~~~~~~~~~~l~~~~-----~---~~~-~~~~~~q~~----~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (246)
+|++.+.+ .+...+.... . .+. ..++..|.. +..++.....+-+++..+..-.+++++.
T Consensus 716 ~G~l~vr~--------~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~ 787 (954)
T PRK05367 716 VGPIGVKA--------HLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIA 787 (954)
T ss_pred eEEEeecc--------cccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 77887765 3332222110 0 000 112221211 2223333234556666666668888889
Q ss_pred HHhhcCCCCccccCCCCc--eEEEEEecccccc-CCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHH
Q 042445 155 DRLKEIPCITCPKKPEGS--MFVMVKLNYSLLE-GINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALE 229 (246)
Q Consensus 155 ~~L~~~~~~~~~~~~~~g--~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~ 229 (246)
+.|++...+. +..|.+. .-.++++...... ++ +. +.+.+.|.++|+...- ..|...+.+|++++. +.++++
T Consensus 788 ~~L~~~~~~~-~~~~~~~~~~e~i~~~~~~~~~~g~-~~-~di~krL~d~G~~~~t-~~~pv~~~l~i~ptE~~s~~elD 863 (954)
T PRK05367 788 KRLKDHYPVL-YTGANGRVAHECILDLRPLKESTGI-TV-DDIAKRLIDYGFHAPT-MSFPVAGTLMVEPTESESKAELD 863 (954)
T ss_pred HHHHhhcCcc-ccCCCCCcccceEEEeecccccCCC-CH-HHHHHHHHHCCCeEee-cCCccCCEEEEEeeecCCHHHHH
Confidence 8887732332 2222211 1122223210000 11 23 4456667899997554 345558899999984 788899
Q ss_pred HHHHHHHHHHHHHh
Q 042445 230 NGLGRMKAFYDRHA 243 (246)
Q Consensus 230 ~~~~~l~~~~~~~~ 243 (246)
+.++.+.+..++..
T Consensus 864 r~~~al~~i~~e~~ 877 (954)
T PRK05367 864 RFCDAMIAIRAEID 877 (954)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888776654
No 351
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=98.58 E-value=5.6e-07 Score=76.50 Aligned_cols=142 Identities=16% Similarity=0.185 Sum_probs=75.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCc-ccCCCCCcccccc--C--CcccEEEEcccccccccCCc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHL-AFGNTPFVSMGVF--G--SIVPLLTLGSISKRGIVPGL 86 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~--~--~~~~~i~~~s~sK~~~~~g~ 86 (246)
++++| +.-|++++ +++|+++|.++|..|++||+|+.. .|. ..+.+...+ + ....++++.|..|. ++++
T Consensus 173 vlt~P-TY~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKt--L~al 245 (417)
T PF01276_consen 173 VLTSP-TYYGVCYD---IKEIAEICHKHGIPLLVDEAHGAHFGFH-PLPRSALALGADRPNDPGIIVVQSTHKT--LPAL 245 (417)
T ss_dssp EEESS--TTSEEE----HHHHHHHHCCTECEEEEE-TT-TTGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHH--SSS-
T ss_pred EEeCC-CCCeEEEC---HHHHHHHhcccCCEEEEEccccccccCC-CCccchhhccCccccccceeeeechhhc--cccc
Confidence 89999 99999987 899999999999999999999854 344 222222122 1 12357999999999 4666
Q ss_pred eEEEEEeeCCCC-CcchhhHHHHHHHHhhh--cCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh---hcC
Q 042445 87 RLGWLVTSDPNG-ILQDSGIVDSIKIFLNI--SSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRL---KEI 160 (246)
Q Consensus 87 r~G~i~~~~~~~-~~~~~~~~~~l~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L---~~~ 160 (246)
..+.++--+... +. .++++.+... ++++|-+..+-+..+........-++..+...++.+.+++.+ +++
T Consensus 246 tQts~lh~~~~~~v~-----~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~ 320 (417)
T PF01276_consen 246 TQTSMLHVKGDRIVD-----HERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRLNDI 320 (417)
T ss_dssp TT-EEEEEETCCCTT-----HHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ccceEEEecCCCccc-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 666555444322 21 3444444322 224443333333322221112233344444455555566665 456
Q ss_pred CCCcc
Q 042445 161 PCITC 165 (246)
Q Consensus 161 ~~~~~ 165 (246)
+++.+
T Consensus 321 ~~~~~ 325 (417)
T PF01276_consen 321 WGFKV 325 (417)
T ss_dssp -SSEE
T ss_pred ceEec
Confidence 55554
No 352
>PRK15029 arginine decarboxylase; Provisional
Probab=98.57 E-value=1.1e-05 Score=73.60 Aligned_cols=76 Identities=9% Similarity=0.009 Sum_probs=54.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCc-ccCCCCCcccccc-----C-CcccEEEEcccccccccC
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHL-AFGNTPFVSMGVF-----G-SIVPLLTLGSISKRGIVP 84 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~-~~~~~~~~~~~~~-----~-~~~~~i~~~s~sK~~~~~ 84 (246)
++++| +.-|++++ +++|+++|+++++.+++||+|+.+ .|.+ .+.....+ . ....++++.|..|. +|
T Consensus 317 vlt~P-TY~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~~-~~p~~sa~~~~~~~~~Gad~~vvqStHKt--L~ 389 (755)
T PRK15029 317 VVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARFNP-IYADHYAMRGEPGDHNGPTVFATHSTHKL--LN 389 (755)
T ss_pred EEECC-CCcceeeC---HHHHHHHHHhcCCeEEEECccccccccCc-cccccccccccccccCCCceEEEEchhhc--cc
Confidence 89999 99999987 889999999999999999999854 4443 22211222 1 11235999999999 46
Q ss_pred CceEEEEEee
Q 042445 85 GLRLGWLVTS 94 (246)
Q Consensus 85 g~r~G~i~~~ 94 (246)
++..|.++--
T Consensus 390 alTQaS~LHv 399 (755)
T PRK15029 390 ALSQASYIHV 399 (755)
T ss_pred chhhhhhhee
Confidence 6777765543
No 353
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=98.55 E-value=5.5e-06 Score=67.60 Aligned_cols=193 Identities=11% Similarity=0.053 Sum_probs=106.9
Q ss_pred cCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcc
Q 042445 22 SGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQ 101 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~ 101 (246)
.-.|++.+++|.+++++||+.+|+||+..+...+|+ +.....++-. .-.-+-+|||-| ..| ||..-.+
T Consensus 287 nhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk-~WaHehw~l~-~PpD~vTFSKK~-q~g---Gffh~~~------ 354 (484)
T KOG1405|consen 287 NHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGK-FWAHEHWNLD-SPPDVVTFSKKF-QTG---GFFHDEE------ 354 (484)
T ss_pred ccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCc-eeeehhcCCC-CCccceehhhhh-hcC---ccccCcc------
Confidence 356889999999999999999999999998776663 3232222111 113366799997 444 5554432
Q ss_pred hhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEec
Q 042445 102 DSGIVDSIKIFLNISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLN 180 (246)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~ 180 (246)
-....-.+..+.| ...|.-...+..+++... +..++.....-....+.+.+.-++.|+...-.... |-|+-.+++
T Consensus 355 --frpn~pYrifNTW-mGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGr-GTF~a~d~p 430 (484)
T KOG1405|consen 355 --FRPNEPYRIFNTW-MGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGR-GTFIAWDCP 430 (484)
T ss_pred --cCCCchHHHhhhh-cCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhccccc-ceEEEEeCC
Confidence 1111122222233 344444444444444322 22233222222222222222223356554333433 555555676
Q ss_pred cccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHHHH
Q 042445 181 YSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAFYD 240 (246)
Q Consensus 181 ~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~~~ 240 (246)
... -.+.+...++-.|+.+..+. ...|||-.+. .+...+-.++++.+.+.
T Consensus 431 s~~------~Rdk~i~~~~~nGv~~GGCg----~~siRfRPsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 431 SGS------IRDKLILIARLNGVNLGGCG----DKSIRFRPSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred ChH------HHHHHHHHHHHcCceecccc----cceeeeccceeehhhhHHHHHHHHHHHhc
Confidence 543 44556667888888764333 6677776663 67777777788777664
No 354
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.53 E-value=1.2e-05 Score=68.62 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=125.8
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccC----Cc------ccCCCCCccc-cccCCcccEEEEcccccccccC-Cc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYG----HL------AFGNTPFVSM-GVFGSIVPLLTLGSISKRGIVP-GL 86 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~----~~------~~~~~~~~~~-~~~~~~~~~i~~~s~sK~~~~~-g~ 86 (246)
--|+++|.+.++++.++|++||+.++.|-+=- .| .+.+.....+ ..+-.... -+.-|+||.+++| |
T Consensus 196 ~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aD-svt~slsKglgApvG- 273 (467)
T TIGR02617 196 AGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYAD-MLAMSAKKDAMVPMG- 273 (467)
T ss_pred CCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCC-EEEEEcCCCCCCccc-
Confidence 36899999999999999999999999997421 11 1222211111 01112222 3445799998776 4
Q ss_pred eEEEEEeeCCCCCcchhhHHHHHHHH----hh--hcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhhc
Q 042445 87 RLGWLVTSDPNGILQDSGIVDSIKIF----LN--ISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLKE 159 (246)
Q Consensus 87 r~G~i~~~~~~~~~~~~~~~~~l~~~----~~--~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 159 (246)
|+++++++ .++ ++..+++.. .. .+.+.+.=...+++.-|.+.. ++|+..+..+ .+++.+.|++
T Consensus 274 --g~Lag~d~-~~~---~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~q----v~yl~~~L~~ 343 (467)
T TIGR02617 274 --GLLCFKDD-SFF---DVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQ----VQYLVNGLEE 343 (467)
T ss_pred --ceEEecch-hHH---HHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHH----HHHHHHHHHh
Confidence 55555552 111 223333321 11 222667777777777777554 4666665554 4566677776
Q ss_pred CCCCccccCCCCceEEEEEeccccccCCC----ChHHHHHHHHHhcCeEEec-CCCc-CC-----------CCeEEEEee
Q 042445 160 IPCITCPKKPEGSMFVMVKLNYSLLEGIN----SDMEFALKLAKEESVIVLP-GITV-GL-----------KDWLRITFA 222 (246)
Q Consensus 160 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gi~v~p-g~~f-~~-----------~~~iRls~~ 222 (246)
. |+. +.. -||.-++++-..- ++.++ ....++..+-.+.||-..- |+.. +. -..+|+++.
T Consensus 344 ~-Gvp-i~~-~Gghav~iDa~~~-lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~Rlaip 419 (467)
T TIGR02617 344 I-GVV-CQQ-AGGHAAFVDAGKL-LPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIP 419 (467)
T ss_pred C-CCc-EEe-cCccEEEEehhhh-CCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccc
Confidence 5 665 345 7888888653210 01111 2566778888899987554 3321 11 268999998
Q ss_pred c---ChHHHHHHHHHHHHHHHHH
Q 042445 223 V---EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 223 ~---~~~~l~~~~~~l~~~~~~~ 242 (246)
. +.+.++..++.+....++-
T Consensus 420 Rrvyt~~h~d~v~~~~~~~~~~~ 442 (467)
T TIGR02617 420 RATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_pred cccccHhHHHHHHHHHHHHHhhh
Confidence 3 8999999999998887643
No 355
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=98.50 E-value=4.1e-05 Score=61.63 Aligned_cols=205 Identities=16% Similarity=0.083 Sum_probs=129.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc-CCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV-PGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g~r~G~ 90 (246)
++++-...||+.-+ -++.+-++|++|++++++|-+-+- ++.++ .++.+..-+....--|++++ +|+ +.
T Consensus 147 fv~hgdsSTgV~q~--~~~~~g~lc~k~~~lllVD~VaSl---ggt~F----~mDewgVDvaytgSQKaL~aP~GL--si 215 (385)
T KOG2862|consen 147 FVTHGDSSTGVLQD--LLAISGELCHKHEALLLVDTVASL---GGTEF----EMDEWGVDVAYTGSQKALGAPAGL--SI 215 (385)
T ss_pred EEEecCccccccch--HHHHHHHHhhcCCeEEEEechhhc---CCccc----eehhhcccEEEecchhhcCCCCCc--ce
Confidence 44444456777643 356677788999999999987553 22222 33443333555556688876 453 34
Q ss_pred EEeeCCCCCcchhhHHHHHHHHhh--------------hc----------CCCCchHHHHHHHHHhhchHHHHHHHHHHH
Q 042445 91 LVTSDPNGILQDSGIVDSIKIFLN--------------IS----------SDPATFIQGAVPQILEKTEEEFFSKIIDIL 146 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~~~--------------~~----------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 146 (246)
+..++ ...++++...+ +| ..++....+.+.++|....++-+++..++.
T Consensus 216 isfS~--------ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH 287 (385)
T KOG2862|consen 216 ISFSD--------KALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRH 287 (385)
T ss_pred eecCH--------HHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 67777765321 11 145666777888888866678899999999
Q ss_pred HHHHHHHHHHhhcCCCCcccc-CCC--CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec
Q 042445 147 RETADKCCDRLKEIPCITCPK-KPE--GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV 223 (246)
Q Consensus 147 ~~~~~~l~~~L~~~~~~~~~~-~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~ 223 (246)
++..+.+...|+++ |+...+ .+. -.-.-.+.++... |-.+.+..+...+++.+..|-.......+|+.+..
T Consensus 288 ~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~gv-----Dw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~g 361 (385)
T KOG2862|consen 288 REMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVPYGV-----DWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLG 361 (385)
T ss_pred HHHHHHHHHHHHHh-CccceecChhhccCcceeeecCCCC-----CHHHHHHHHHHhcCEEeccccCCCcccEEEEEEee
Confidence 99999999999986 443222 111 1111122344332 34445555555557766555544447899999762
Q ss_pred ---ChHHHHHHHHHHHHHHHH
Q 042445 224 ---EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 224 ---~~~~l~~~~~~l~~~~~~ 241 (246)
+.+.++..++.|..++.+
T Consensus 362 cna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 362 CNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred ccCCcHHHHHHHHHHHHHHhh
Confidence 788999999999988864
No 356
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.50 E-value=8e-06 Score=76.69 Aligned_cols=190 Identities=14% Similarity=0.065 Sum_probs=115.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccc-----cccCCc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKR-----GIVPGL 86 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-----~~~~g~ 86 (246)
++.+| |-+|.+.+ +++|+++|+++|+++++|-....+.... +...++- -|+++|.-|. ||+||
T Consensus 211 lvq~p-~~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l~----~pge~Ga---Di~vgs~qkfg~P~g~GGP~- 278 (954)
T PRK05367 211 LLQYP-GTSGEVRD---YTALIAAAHARGALVAVAADLLALTLLT----PPGEMGA---DIAVGSAQRFGVPMGFGGPH- 278 (954)
T ss_pred EEecC-CCCeeecc---HHHHHHHHHHcCCEEEEEehhhhccCCC----ChhhcCC---CEEEeeCcccCCCCCCCCCC-
Confidence 56678 99999975 9999999999999999986443222111 1122222 2777777776 77776
Q ss_pred eEEEEEeeCCCCCcchhhHHHHHHHH-hh-----------------------hcCCC-CchH---HHHHHHH--HhhchH
Q 042445 87 RLGWLVTSDPNGILQDSGIVDSIKIF-LN-----------------------ISSDP-ATFI---QGAVPQI--LEKTEE 136 (246)
Q Consensus 87 r~G~i~~~~~~~~~~~~~~~~~l~~~-~~-----------------------~~~~~-~~~~---q~~~~~~--l~~~~~ 136 (246)
.|++.+.+ ++.+.+... .+ ...+. |.-. ..++.+. +.....
T Consensus 279 -aGflavr~--------~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~ 349 (954)
T PRK05367 279 -AAYFAVRD--------AYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGP 349 (954)
T ss_pred -EEEEEECH--------HHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhh
Confidence 78888776 544444211 00 00011 1111 1111111 121224
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCe
Q 042445 137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW 216 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 216 (246)
.-+++.+++...+..++.+.|+.. |+... .+ .+|-.+.+.... +.+.+.+.|.++||.+..- .++.
T Consensus 350 ~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~-~~--~~f~~~~~~~~~------~~~~i~~~l~~~gi~~~~~----~~~~ 415 (954)
T PRK05367 350 EGLKAIARRVHRLAAILAAGLRAL-GLEVV-HD--SFFDTLTVEVGG------DAAAVLARALAAGINLRRV----DDDH 415 (954)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc-CcccC-CC--CCCCeEEEeCCC------CHHHHHHHHHHCCceeccc----cCCE
Confidence 557788888888999999999774 66632 22 233333333211 3445566678899987331 1578
Q ss_pred EEEEeec--ChHHHHHHHHHHH
Q 042445 217 LRITFAV--EPSALENGLGRMK 236 (246)
Q Consensus 217 iRls~~~--~~~~l~~~~~~l~ 236 (246)
+|+|+.. ++++++..++.|.
T Consensus 416 l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 416 VGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred EEEEecccCCHHHHHHHHHHHc
Confidence 9999994 7889999999886
No 357
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=98.45 E-value=2.1e-05 Score=69.54 Aligned_cols=205 Identities=15% Similarity=0.136 Sum_probs=114.4
Q ss_pred CCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcccccccccCCceEEEEEe
Q 042445 15 FQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVT 93 (246)
Q Consensus 15 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~ 93 (246)
.-++.||.+-+ +++|.++|+++|+++.+|-+|++...-...+. .+..+.. --.+..+..|.+++| ..+|.++.
T Consensus 273 aGtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~--aDSit~d~HK~l~~P-~g~G~llv 346 (522)
T TIGR03799 273 AGTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIER--ADSVTIDAHKQLYVP-MGAGMVLF 346 (522)
T ss_pred ecCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchh--CCEEEEChhhcCCcC-cccEEEEE
Confidence 33458999877 88999999999999999999986543211110 0122211 125566789964443 55888888
Q ss_pred eCCCCCcchhhHHHHHHHHhh------------hcCCCCc-hHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042445 94 SDPNGILQDSGIVDSIKIFLN------------ISSDPAT-FIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEI 160 (246)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 160 (246)
.+. ...+.+..... .+...+. .....+...++.-...-+++..+...+.++.+.+.|++.
T Consensus 347 r~~-------~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~ 419 (522)
T TIGR03799 347 KDP-------ALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ 419 (522)
T ss_pred eCH-------HHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 763 44443332100 0111111 111223344443334567888888889999999999998
Q ss_pred CCCccccCCCCceEEEEEeccccccCC----------------CChHHHHHHHHHhcCeEEecCCCcC-----C--CCeE
Q 042445 161 PCITCPKKPEGSMFVMVKLNYSLLEGI----------------NSDMEFALKLAKEESVIVLPGITVG-----L--KDWL 217 (246)
Q Consensus 161 ~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~ll~~~gi~v~pg~~f~-----~--~~~i 217 (246)
+++..+.+|.-+ .+.+++.+..+... ..-.+.+.+.+.+.|.......... . ...+
T Consensus 420 ~~~el~~~p~l~-iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~l 498 (522)
T TIGR03799 420 PDFELVTEPELC-LLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVF 498 (522)
T ss_pred CCeEEecCCCcc-EEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEE
Confidence 888865555443 34444432211100 0001234444555665544422221 1 2459
Q ss_pred EEEeec---ChHHHHHHHH
Q 042445 218 RITFAV---EPSALENGLG 233 (246)
Q Consensus 218 Rls~~~---~~~~l~~~~~ 233 (246)
|+++.. +.++++..++
T Consensus 499 R~~~~np~tt~~~i~~~l~ 517 (522)
T TIGR03799 499 RVVLANPLTTHEILQDILD 517 (522)
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 999984 6777776554
No 358
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=98.38 E-value=2.6e-05 Score=65.60 Aligned_cols=187 Identities=14% Similarity=0.100 Sum_probs=117.7
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCC
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNG 98 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~ 98 (246)
.||+.++ ++.+.++.++|+|-+=+.+. .+. .+..+ -++..+.-|.+|.|| ++.++.++
T Consensus 155 stGv~~~--------~~~~~~~~llvvD~sS~~~s---~pi-d~~~~-----dvi~agsQKnlgP~G--ltvvivs~--- 212 (364)
T PRK12462 155 VEGLQFP--------DAAGLPDSPLIADMSSDFMS---RPF-DVEAY-----GMVYAHAQKNLGPAG--VTVAIIRR--- 212 (364)
T ss_pred CceEecC--------cccccCCCeEEEEcCchhhC---CCC-ChHHc-----cEEEeeccccCCCCc--eEEEEECH---
Confidence 7788775 22233689999997644322 222 22222 277778899999888 56677766
Q ss_pred CcchhhHHHHHHHH------------h-hhcCCCCchHHHHHHHHHhhchHH--HHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445 99 ILQDSGIVDSIKIF------------L-NISSDPATFIQGAVPQILEKTEEE--FFSKIIDILRETADKCCDRLKEIPCI 163 (246)
Q Consensus 99 ~~~~~~~~~~l~~~------------~-~~~~~~~~~~q~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~ 163 (246)
+.+++.... . ....+++....+++...|+...++ -++.+.++.+++++.+++.+++.+++
T Consensus 213 -----~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~ 287 (364)
T PRK12462 213 -----ALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEV 287 (364)
T ss_pred -----HHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 555443321 0 122256667777777777654445 68888899999999999999987654
Q ss_pred cc-ccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHHHHH
Q 042445 164 TC-PKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRMKAF 238 (246)
Q Consensus 164 ~~-~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l~~~ 238 (246)
-. .+.+ .+-+-+.+++.+.. ..+.+.+.++++|+.-.-|.. .-+.+|.|+-. +.+.++.+++-++++
T Consensus 288 ~~~~~~~~~RS~mnv~f~~~~~~------l~~~f~~~a~~~gl~~lkGhr--~vgg~Ras~yna~~~e~v~~L~~fm~~f 359 (364)
T PRK12462 288 IDCHAHRAARSTMNVAFRFRQPR------LDTLFKEQSTEAGFCGLSGHR--SIGGIRASLYNAVSEQAVSRLCAFLKDF 359 (364)
T ss_pred ccCCCChhhcCcceEEEEcCCHH------HHHHHHHHHHHCCCccccCCc--ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 32 1222 34566666666543 334445568899998776654 26789999875 766555555555554
Q ss_pred HH
Q 042445 239 YD 240 (246)
Q Consensus 239 ~~ 240 (246)
-+
T Consensus 360 ~~ 361 (364)
T PRK12462 360 AI 361 (364)
T ss_pred HH
Confidence 33
No 359
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.38 E-value=0.00011 Score=68.61 Aligned_cols=219 Identities=12% Similarity=-0.005 Sum_probs=123.3
Q ss_pred hhhhhhhcc---c----cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445 2 ELINQDITR---E----FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL 74 (246)
Q Consensus 2 e~~~~~~~~---~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (246)
|.+++.+.+ + ++++||| +|.+-+ .+++|+++|+++|.++++|-++...... ... .+..+--+++
T Consensus 616 e~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~al~~---l~~---Pg~~GaDi~~ 686 (939)
T TIGR00461 616 VDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGANMNAQVG---LTS---PGDLGADVCH 686 (939)
T ss_pred HHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecChhhCCC---CCC---ccccCCCEEE
Confidence 456666653 2 7889977 788743 3899999999999999999988642111 111 1112223778
Q ss_pred cccccccc----cCCceEEEEEeeCCCCCcchhhHHHHHHHH------------h--hhcC---CCCchHHHHHHHHHhh
Q 042445 75 GSISKRGI----VPGLRLGWLVTSDPNGILQDSGIVDSIKIF------------L--NISS---DPATFIQGAVPQILEK 133 (246)
Q Consensus 75 ~s~sK~~~----~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~------------~--~~~~---~~~~~~q~~~~~~l~~ 133 (246)
+|..|.|+ ..|=-+|++.+.+ ++...+... . ...+ ..+......+..++..
T Consensus 687 ~s~HKtf~~P~G~GGPg~G~i~vr~--------~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~ 758 (939)
T TIGR00461 687 LNLHKTFCIPHGGGGPGMGPIGVKS--------HLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKM 758 (939)
T ss_pred ecCCccCCCCCCCCCCCeEEEEEhh--------hchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHH
Confidence 88888554 2334478888876 333222210 0 0010 1111222333444443
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCC-Cce-E--EEEEecccc-ccCCCChHHHHHHHHHhcCeEEecC
Q 042445 134 TEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPE-GSM-F--VMVKLNYSL-LEGINSDMEFALKLAKEESVIVLPG 208 (246)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~g~-~--~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~pg 208 (246)
...+-+.+..+.--.+++++.+.|++. +. ...+. .+. + +.++++... --+. ....+.+.|.++|+...-
T Consensus 759 lG~~GL~~~a~~ailnAnYl~~rL~~~--~~-~l~~~~~~~~~hEfv~~~~~~~~~~g~--~~~dIakrL~d~G~hapt- 832 (939)
T TIGR00461 759 MGNEGLPKASVVAILNANYMATRLKDH--YP-ILFVGTLKHVAHECILDLRPLKAKTGI--EAIDVAKRLQDYGFHAPT- 832 (939)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhhcc--Cc-ccccCCCCceeEEEEEeccchhhhcCC--CHHHHHHHHHhCCeeccc-
Confidence 345667788887888999999999873 23 22221 222 2 223343210 0011 345556677799986332
Q ss_pred CCcCCCCeEEEEee--cChHHHHHHHHHHHHHHHHHh
Q 042445 209 ITVGLKDWLRITFA--VEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 209 ~~f~~~~~iRls~~--~~~~~l~~~~~~l~~~~~~~~ 243 (246)
..|...+.+-+.++ .+.+++++.++.+.+.-++..
T Consensus 833 ~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~~ 869 (939)
T TIGR00461 833 LSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEIN 869 (939)
T ss_pred cCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 33444555545554 477888888888877665543
No 360
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=98.34 E-value=6.7e-05 Score=63.60 Aligned_cols=199 Identities=14% Similarity=0.056 Sum_probs=117.8
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPN 97 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~ 97 (246)
..||+..+. +++...+ +++++|+|-+=+.. +.++ .+.. --+++.|.-|.+++|+ -+|+++.++
T Consensus 138 TSTGv~npv---~~i~~~~--~~~lliVDavSs~g---~~~l-~~d~-----iDv~~tgsQK~L~~pp-Gls~v~vs~-- 200 (374)
T TIGR01365 138 TTSGVRVPN---GDFIPAD--REGLTICDATSAAF---AQDL-DYHK-----LDVVTFSWQKVLGGEG-AHGMLILSP-- 200 (374)
T ss_pred Cchheeccc---ccccccc--CCCcEEEEccchhc---CCCC-ChhH-----CcEEEEechhccCCCC-ceEEEEECH--
Confidence 488888874 3333211 48999999764432 2222 2221 2377888999999855 366777777
Q ss_pred CCcchhhHHHHHHHH----------------------h-hhcC-CCCchHHHHHHHHHhhchHH-HHHHHHHHHHHHHHH
Q 042445 98 GILQDSGIVDSIKIF----------------------L-NISS-DPATFIQGAVPQILEKTEEE-FFSKIIDILRETADK 152 (246)
Q Consensus 98 ~~~~~~~~~~~l~~~----------------------~-~~~~-~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 152 (246)
+.+++.... . ..+. .++....+++..++....+. -++.+.++.+++++.
T Consensus 201 ------~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~ 274 (374)
T TIGR01365 201 ------RAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAV 274 (374)
T ss_pred ------HHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666554421 0 1111 22333334444444321122 488889999999999
Q ss_pred HHHHhhcCCCCccccC-C--CCceEEEEEeccccccCCCCh-----HHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-c
Q 042445 153 CCDRLKEIPCITCPKK-P--EGSMFVMVKLNYSLLEGINSD-----MEFALKLAKEESVIVLPGITVGLKDWLRITFA-V 223 (246)
Q Consensus 153 l~~~L~~~~~~~~~~~-~--~~g~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~ 223 (246)
+++.+++++.+..+.. + .+.....+.++.+.+.....+ .+.+...++++||.+.+|.+-..+..+|++-. .
T Consensus 275 l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~ 354 (374)
T TIGR01365 275 LEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGAT 354 (374)
T ss_pred HHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCc
Confidence 9999999853543321 1 223333344543211000002 35567788899999998876544689999855 3
Q ss_pred -ChHHHHHHHHHHHHHH
Q 042445 224 -EPSALENGLGRMKAFY 239 (246)
Q Consensus 224 -~~~~l~~~~~~l~~~~ 239 (246)
+.++++.+++.|.=+.
T Consensus 355 i~~~di~~l~~~l~~~~ 371 (374)
T TIGR01365 355 VEKSDLECLCPWLDWAF 371 (374)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 8999999888876544
No 361
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=98.32 E-value=7.7e-05 Score=59.00 Aligned_cols=205 Identities=14% Similarity=0.105 Sum_probs=123.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
++++|..--|.. .+.+++.++|+++++.++..-+|.-.. .+.+....+.+ ++++|=.|.+ ++..++|.+
T Consensus 161 llTh~Dg~YGNl---~Dakkva~ic~e~gvPlllN~AYt~Gr----mpvs~ke~g~D---FiVgSGHKsm-AAs~PiGvl 229 (382)
T COG1103 161 LLTHVDGEYGNL---ADAKKVAKICREYGVPLLLNCAYTVGR----MPVSGKEIGAD---FIVGSGHKSM-AASAPIGVL 229 (382)
T ss_pred EEeccCCCcCCc---hhhHHHHHHHHHcCCceEeecceeecc----ccccccccCCC---EEEecCccch-hccCCeeEE
Confidence 677665555555 458999999999999999999998533 33444444433 8899999996 556699999
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhh--------cCCCCchHHHHHHHHHhh-ch-HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNI--------SSDPATFIQGAVPQILEK-TE-EEFFSKIIDILRETADKCCDRLKEIP 161 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~q~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~l~~~L~~~~ 161 (246)
..+. +..+...+...- -.+.+.-+. .+..++.+ +. .+...++.+ --++.+.+.+.|++++
T Consensus 230 ~~~e--------E~ae~V~r~Sg~~~~~KEvellGCT~rGa-pivTlmASfP~V~eRVkrWde-Ev~kaR~fv~elEkig 299 (382)
T COG1103 230 AMSE--------EWAEIVLRRSGRAFPKKEVELLGCTVRGA-PIVTLMASFPHVVERVKRWDE-EVEKARWFVAELEKIG 299 (382)
T ss_pred eehh--------HHHHHHHhhcccccccceeeeecccccCc-hHHHHHhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 9988 777766543210 001111111 11222221 11 122222222 2356677888888887
Q ss_pred CCccc-cCCCCceEEEEEeccccccCC----CChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee-cChHHHHHHHHHH
Q 042445 162 CITCP-KKPEGSMFVMVKLNYSLLEGI----NSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA-VEPSALENGLGRM 235 (246)
Q Consensus 162 ~~~~~-~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~~~~~l~~~~~~l 235 (246)
|+... ..|..--. +.|..+.+..+ +..--++++-|+++||.- ...+.+.++.+|+- .+.|+++..++.+
T Consensus 300 g~~qlG~rPk~HdL--m~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~G---I~~G~Tk~~K~svyGl~~Eqve~V~~af 374 (382)
T COG1103 300 GVKQLGERPKNHDL--MKFETPVFHEIAKKHKRKGYFLYEELKKRGIHG---IQPGQTKYFKLSVYGLSWEQVEYVVDAF 374 (382)
T ss_pred hHHHhCCCCcccce--eeecCchHHHHHHhCcCCceeeHHHHHhcCccc---cccCceeEEEEEeecCCHHHHHHHHHHH
Confidence 76642 23332222 22433222111 011225677788888753 22233789999966 5999999999999
Q ss_pred HHHHHHH
Q 042445 236 KAFYDRH 242 (246)
Q Consensus 236 ~~~~~~~ 242 (246)
++.++++
T Consensus 375 keI~eky 381 (382)
T COG1103 375 KEIAEKY 381 (382)
T ss_pred HHHHHhc
Confidence 9988764
No 362
>PLN03032 serine decarboxylase; Provisional
Probab=98.28 E-value=8.2e-05 Score=63.10 Aligned_cols=201 Identities=12% Similarity=0.027 Sum_probs=114.0
Q ss_pred hhhhhhhcc---c----cccCCcCCCccCCChhhHHHHHHHHHHcC-----CEEEEccccCCcccCCCCCccccccCCcc
Q 042445 2 ELINQDITR---E----FSDFQVFHVGSGFSGSFVSPIAETAKKLG-----IMVIANEVYGHLAFGNTPFVSMGVFGSIV 69 (246)
Q Consensus 2 e~~~~~~~~---~----~~~~p~NPtG~~~~~~~~~~l~~~~~~~~-----~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 69 (246)
+.+++.+.+ + +.+..+|+||.+-+ +++|.++|+++| +++.+|-+|+++...=....+...+...
T Consensus 149 ~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~- 224 (374)
T PLN03032 149 DDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKP- 224 (374)
T ss_pred HHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcC-
Confidence 445555544 1 56668899999966 888889999996 5899999998654220000000011111
Q ss_pred cEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh------hcCCCCc--hHHHHHHHHHhhchHHHHHH
Q 042445 70 PLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN------ISSDPAT--FIQGAVPQILEKTEEEFFSK 141 (246)
Q Consensus 70 ~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~--~~q~~~~~~l~~~~~~~~~~ 141 (246)
---+.-|..|.+++| ..+|.++..+ ..++.+....+ .+...|. .....+...|.....+-+.+
T Consensus 225 vDSis~s~HK~~g~P-~g~G~ll~r~--------~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~ 295 (374)
T PLN03032 225 IGSVSVSGHKFLGCP-MPCGVALTRK--------KHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKR 295 (374)
T ss_pred CcEEEECcccccCCC-cCeEEEEEEc--------hhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHH
Confidence 123455688996533 5588999887 55554432211 1122232 23333334444333556677
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe
Q 042445 142 IIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITF 221 (246)
Q Consensus 142 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~ 221 (246)
..+..-+..+.+.+.|++. ++..+..|.. +.+. |..+. +.. +. +|..+.+ .++.+|+++
T Consensus 296 ~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~-~~V~--f~~~~------~~~----~~--~~w~l~~-----~~~~~hi~v 354 (374)
T PLN03032 296 DVQHCMRNAHYLKDRLTEA-GLTCRLNELS-STVV--FERPM------DEA----FI--KKWQLAC-----EGDIAHVVV 354 (374)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcEEECCCc-eEEE--EcCCC------cHh----Hh--heeeecc-----cCCEEEEEE
Confidence 7777788888999999886 5554556653 3333 43321 111 11 2333332 135889998
Q ss_pred ec--ChHHHHHHHHHHH
Q 042445 222 AV--EPSALENGLGRMK 236 (246)
Q Consensus 222 ~~--~~~~l~~~~~~l~ 236 (246)
.. +.+.+++.++.|.
T Consensus 355 m~~~~~~~id~fi~dl~ 371 (374)
T PLN03032 355 MPNVTVEKLDEFVEELV 371 (374)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 85 5566666666554
No 363
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.22 E-value=0.00019 Score=59.09 Aligned_cols=197 Identities=13% Similarity=0.042 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHcCCEEEEccccC-CcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCC----------
Q 042445 28 FVSPIAETAKKLGIMVIANEVYG-HLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDP---------- 96 (246)
Q Consensus 28 ~~~~l~~~~~~~~~~ii~De~y~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~---------- 96 (246)
+..++.++|.+.|+++++|-+|- +++..+--+.+.... -|+..+..|.+- |=|-|.|.-...
T Consensus 205 DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~-----DiVTTTTHKsLR--GPRg~mIFyRkGvk~~~~k~g~ 277 (477)
T KOG2467|consen 205 DYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC-----DIVTTTTHKSLR--GPRGAMIFYRKGVKSIKPKQGK 277 (477)
T ss_pred cHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc-----ceeecccccccc--CCcceeEEEeccCCcCCCCCCC
Confidence 57788889999999999999987 344333222222211 277788889854 445555543321
Q ss_pred CCCcchhhHHHHHHHHhh--hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceE
Q 042445 97 NGILQDSGIVDSIKIFLN--ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMF 174 (246)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 174 (246)
+..+ ++-+++...-. ...++.--...+++.+|.........+-.++..+|.+.+.+.|.+. |.+.+........
T Consensus 278 ~i~y---dlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHl 353 (477)
T KOG2467|consen 278 EILY---DLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHL 353 (477)
T ss_pred ccee---chhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceE
Confidence 1122 56666665522 3335655666677777776555556677777888999999999887 5654444445677
Q ss_pred EEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC-----CCeEEEEeec------ChHHHHHHHHHHHHHHH
Q 042445 175 VMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL-----KDWLRITFAV------EPSALENGLGRMKAFYD 240 (246)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~-----~~~iRls~~~------~~~~l~~~~~~l~~~~~ 240 (246)
+.+++....+ +-..+...|..-+|.+.--..++. ++.||+.-.. -++++++..+-|.++++
T Consensus 354 vLvDLr~~G~-----dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 354 VLVDLRPKGV-----DGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred EEEeccccCC-----chHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 7777776543 555566777777777654333332 8999996431 57788888887777654
No 364
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.20 E-value=0.00016 Score=68.04 Aligned_cols=189 Identities=14% Similarity=0.127 Sum_probs=109.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc-----ccCCc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG-----IVPGL 86 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-----~~~g~ 86 (246)
+..+| |.+|.+.+ +++|.++|+++|+++++ -+... ... ...+...++. -|++++--|.. |+|.
T Consensus 239 lvq~P-~~~G~v~d---v~~I~~~ah~~GaL~iV-aad~l-al~--~l~~pge~GA---Di~vgsgqKwg~P~G~GGP~- 306 (993)
T PLN02414 239 LVQYP-ATDGEVLD---YAEFVKNAHANGVKVVM-ATDLL-ALT--MLKPPGEWGA---DIVVGSAQRFGVPMGYGGPH- 306 (993)
T ss_pred EEecC-CCCeEEcC---HHHHHHHHHHcCCEEEE-EECHH-Hhc--CCCCHhhccC---cEEEECCCccccCCCCCCCC-
Confidence 45566 77999965 89999999999999998 33221 111 1111222222 26677766664 3343
Q ss_pred eEEEEEeeCCCCCcchhhHHHHHHH-Hhh-----------------------h-cCCCCchHHHHHHHHHh-----hchH
Q 042445 87 RLGWLVTSDPNGILQDSGIVDSIKI-FLN-----------------------I-SSDPATFIQGAVPQILE-----KTEE 136 (246)
Q Consensus 87 r~G~i~~~~~~~~~~~~~~~~~l~~-~~~-----------------------~-~~~~~~~~q~~~~~~l~-----~~~~ 136 (246)
.|++.+.+ ++.+.+.. ..+ . ....|.-+..++.+.+. ....
T Consensus 307 -aGflavr~--------~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~ 377 (993)
T PLN02414 307 -AAFLATSQ--------EYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP 377 (993)
T ss_pred -eeEEEECH--------HHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhcc
Confidence 88888877 44332220 000 0 00112212222222222 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCe
Q 042445 137 EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDW 216 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~ 216 (246)
.-+++.+++..++...+.+.|+.. |+.. ..+ .+|-.+.+... +. +.+.+.|.++||.+.... ++.
T Consensus 378 ~Gl~~Ia~ri~~la~~l~~~L~~~-G~~~-~~~--~~f~~vt~~~~------~~-~~v~~~L~~~gI~l~~~~----~~~ 442 (993)
T PLN02414 378 EGLKTIAQRVHGLAGVFAAGLKKL-GFQV-QSL--PFFDTVKVKCS------DA-DAIADAAAKVGINLRVVD----ANT 442 (993)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc-CCcc-CCC--CCcCeEEEecC------CH-HHHHHHHHHCCCeeEEec----CCe
Confidence 347777888888899999999775 5653 222 23333333322 24 445667788999776432 567
Q ss_pred EEEEeec--ChHHHHHHHHHHH
Q 042445 217 LRITFAV--EPSALENGLGRMK 236 (246)
Q Consensus 217 iRls~~~--~~~~l~~~~~~l~ 236 (246)
+|+|+.. ++++++.+++.|.
T Consensus 443 lrvs~~e~~T~edId~L~~~l~ 464 (993)
T PLN02414 443 VTVSFDETTTLEDVDKLFKVFA 464 (993)
T ss_pred EEEEeeccCCHHHHHHHHHHHc
Confidence 9999995 8889999999885
No 365
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=98.17 E-value=0.0002 Score=65.08 Aligned_cols=73 Identities=10% Similarity=-0.029 Sum_probs=49.6
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcc-cCCC--CCccccccC-CcccEEEEcccccccccCCce
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLA-FGNT--PFVSMGVFG-SIVPLLTLGSISKRGIVPGLR 87 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~--~~~~~~~~~-~~~~~i~~~s~sK~~~~~g~r 87 (246)
++++| +--|.+++ ++.|.+.|..++ |++||+|..+. |.+. +..++.... +.+.++++.|..|. ++++.
T Consensus 302 vit~p-TYdG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKt--L~alT 373 (714)
T PRK15400 302 VITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKL--LAAFS 373 (714)
T ss_pred EEECC-CCccEecC---HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhc--ccchh
Confidence 88899 89999988 677777777766 78999998653 4431 122332221 22457999999999 46666
Q ss_pred EEEEE
Q 042445 88 LGWLV 92 (246)
Q Consensus 88 ~G~i~ 92 (246)
.+.++
T Consensus 374 QaS~L 378 (714)
T PRK15400 374 QASMI 378 (714)
T ss_pred HHhHH
Confidence 66544
No 366
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=98.15 E-value=0.00027 Score=57.46 Aligned_cols=207 Identities=13% Similarity=0.059 Sum_probs=126.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc-CCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV-PGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g~r~G~ 90 (246)
++++-|.-||+.++ +.+|-+++.+++++++.|-+|+.....- . +...+--+-|++.-|.+++ ||..-|-
T Consensus 171 ~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp~----~---Lh~~gaDfaigcsyKYLNgGPGapa~l 240 (407)
T COG3844 171 LLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVPV----D---LHAAGADFAIGCSYKYLNGGPGAPAGL 240 (407)
T ss_pred Eeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCcce----e---ecccCCCeeeeeeceeccCCCCCceeE
Confidence 77888789999988 8889999999999999999998654331 1 1122223667777787764 7766555
Q ss_pred EEeeCCCCCcchh------------hHHHHHHH---Hhh-hcCCCCchHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 042445 91 LVTSDPNGILQDS------------GIVDSIKI---FLN-ISSDPATFIQGAVPQILEKTEEEFFSKIIDILRETADKCC 154 (246)
Q Consensus 91 i~~~~~~~~~~~~------------~~~~~l~~---~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (246)
-+.+++-+..- + .+...... ... ..++++.++..++...|.--.+-.+.++|++--.....+.
T Consensus 241 ~v~~~h~e~~~-~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fi 319 (407)
T COG3844 241 FVAPRHRERSW-PPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFI 319 (407)
T ss_pred Eeccccccccc-cccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHH
Confidence 55544211100 0 00000000 001 1224444555555555553334447777776666677777
Q ss_pred HHhhc-CC--CCccccCCC----CceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---C
Q 042445 155 DRLKE-IP--CITCPKKPE----GSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---E 224 (246)
Q Consensus 155 ~~L~~-~~--~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~ 224 (246)
+.++. .+ ++. ...|. -|--+.+..+ ....+.+.|.++||+. .|..++-+||.++. +
T Consensus 320 eLvEa~~~~~~l~-l~tPr~~~~rGsqvS~~hp---------~~~~V~qaLi~rGVig----D~R~P~vlRfgftPlY~~ 385 (407)
T COG3844 320 ELVEARCEYYGLT-LVTPRAHEERGSQVSLYHP---------HGYQVMQALIDRGVIG----DFREPDVLRFGFTPLYVS 385 (407)
T ss_pred HHHHhccccCCcE-EeccchhhhccceeeEecC---------cHHHHHHHHHHcCccc----cccCCCeeeecCccceec
Confidence 77765 22 333 23332 1333443343 4456677888999963 34458999999994 7
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 042445 225 PSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 225 ~~~l~~~~~~l~~~~~~~~ 243 (246)
-+++=.+++.|.+.+++.+
T Consensus 386 ~~DVw~AV~~L~evL~t~a 404 (407)
T COG3844 386 FVDVWDAVDALEEVLDTLA 404 (407)
T ss_pred hhHHHHHHHHHHHHHHhhc
Confidence 7889999999999988754
No 367
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=98.12 E-value=0.0011 Score=60.44 Aligned_cols=75 Identities=11% Similarity=-0.040 Sum_probs=48.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEE-EEccccCCcc-cCCC--CCcccccc-CCcccEEEEcccccccccCCc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMV-IANEVYGHLA-FGNT--PFVSMGVF-GSIVPLLTLGSISKRGIVPGL 86 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~i-i~De~y~~~~-~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~~~g~ 86 (246)
++++| +.-|.+++ ++.|.+.| |+.+ ++||+|..+. |.+. +..++... +.+..++.+.|..|. ++++
T Consensus 302 vit~p-TYdGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKt--L~al 372 (713)
T PRK15399 302 VITNS-TYDGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKM--LAAF 372 (713)
T ss_pred EEECC-CCCceeeC---HHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhcc--cccc
Confidence 88999 99999998 55566655 5655 6999998554 4331 12223222 123345779999999 5676
Q ss_pred eEEEEEeeC
Q 042445 87 RLGWLVTSD 95 (246)
Q Consensus 87 r~G~i~~~~ 95 (246)
..+.++--+
T Consensus 373 TQaS~iHvk 381 (713)
T PRK15399 373 SQASLIHIK 381 (713)
T ss_pred chheeeeec
Confidence 667655433
No 368
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=98.11 E-value=0.00013 Score=63.53 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=93.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC--CCCCccccccCCcccEEEEcccccccccCCceEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG--NTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLG 89 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G 89 (246)
+.+-.+.|||.+ +++++|.++|+++++++.+|-+|+++... .... . ..+.-..-.=+.-++.|. |..=..+|
T Consensus 212 V~~aGtT~~G~i---Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~-~-~~f~l~~vdSIt~d~HK~-g~aP~~~G 285 (460)
T COG0076 212 VGTAGTTDTGSI---DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDG-R-WDFGLEGVDSITVDGHKY-GLAPIGCG 285 (460)
T ss_pred EEEecCCCCCcc---CCHHHHHHHHHHcCCcEEEEccccceeecccCccc-h-hhcCCCCceEEEECcccc-cCCCCCce
Confidence 345556678776 56999999999999999999999988742 2111 1 111111122344568899 55557799
Q ss_pred EEEeeCCCCCcchhhHHHHHHHHhhh---------cCCCCchHHHHHH--HHHhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 042445 90 WLVTSDPNGILQDSGIVDSIKIFLNI---------SSDPATFIQGAVP--QILEKTEEEFFSKIIDILRETADKCCDRLK 158 (246)
Q Consensus 90 ~i~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~q~~~~--~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 158 (246)
|++..+.+ ++.+.+.....+ +...+..+-.++. ..+.....+-+.++.++.-+.++.+.+.|+
T Consensus 286 ~il~rd~e------~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~ 359 (460)
T COG0076 286 VVLFRDEE------ALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELE 359 (460)
T ss_pred EEEEECHH------HhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999841 233333321111 1112222212222 222222245567777777789999999999
Q ss_pred cCCCCccccCCCCceEEEEEec
Q 042445 159 EIPCITCPKKPEGSMFVMVKLN 180 (246)
Q Consensus 159 ~~~~~~~~~~~~~g~~~~~~~~ 180 (246)
+.+.+..+..| ....+.++.+
T Consensus 360 ~~~~~e~~~~p-~l~~V~fr~~ 380 (460)
T COG0076 360 KLGDFELVNEP-ELPIVAFRLK 380 (460)
T ss_pred hCCCcEeecCC-ccceEEEEcC
Confidence 98767755555 3455555553
No 369
>PRK13578 ornithine decarboxylase; Provisional
Probab=98.02 E-value=0.00062 Score=61.98 Aligned_cols=75 Identities=7% Similarity=0.080 Sum_probs=51.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHH-HHHcCCEEEEccccCCcc-cCCC--CCccc-cccCCc-ccEEEEcccccccccCC
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAET-AKKLGIMVIANEVYGHLA-FGNT--PFVSM-GVFGSI-VPLLTLGSISKRGIVPG 85 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~-~~~~~~~ii~De~y~~~~-~~~~--~~~~~-~~~~~~-~~~i~~~s~sK~~~~~g 85 (246)
++++| +.-|++++ ++.|+++ ++.++ .|++||+|..+. |.+. .+..+ ...+.+ ..++++.|..|. +++
T Consensus 287 vit~p-TYdG~~yd---i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKt--L~a 359 (720)
T PRK13578 287 VIQLG-TYDGTIYN---ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQ--QAG 359 (720)
T ss_pred EEECC-CCcceeec---HHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhc--chh
Confidence 89999 99999988 7788887 57778 999999998554 4431 12222 122332 357999999999 466
Q ss_pred ceEEEEEe
Q 042445 86 LRLGWLVT 93 (246)
Q Consensus 86 ~r~G~i~~ 93 (246)
+..+.++-
T Consensus 360 lTQaS~LH 367 (720)
T PRK13578 360 FSQTSQIH 367 (720)
T ss_pred hhhHhhhh
Confidence 66666553
No 370
>PLN02263 serine decarboxylase
Probab=98.02 E-value=0.0017 Score=56.48 Aligned_cols=196 Identities=12% Similarity=-0.022 Sum_probs=114.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCC-----EEEEccccCCcccCC-CCCccccccCCcccEEEEcccccccccCC
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGI-----MVIANEVYGHLAFGN-TPFVSMGVFGSIVPLLTLGSISKRGIVPG 85 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~-----~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~g 85 (246)
+.+-.+-++|.+ +.+++|.++|+++|+ |+.+|-+|+++...- .....+. +.....-|. -+..|.+ ..-
T Consensus 233 vataGTT~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~d-f~~~vDSIs-vD~HK~l-~~P 306 (470)
T PLN02263 233 NVNIGTTVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVT-FKKPIGSVS-VSGHKFV-GCP 306 (470)
T ss_pred EEEecCCCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccC-CCcCccEEE-ECCcccc-CCC
Confidence 445566788887 559999999999996 999999999876421 1111111 111112233 3467995 555
Q ss_pred ceEEEEEeeCCCCCcchhhHHHHHHHHh------hhcCCCCchH--HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh
Q 042445 86 LRLGWLVTSDPNGILQDSGIVDSIKIFL------NISSDPATFI--QGAVPQILEKTEEEFFSKIIDILRETADKCCDRL 157 (246)
Q Consensus 86 ~r~G~i~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~--q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L 157 (246)
..+|.++..+ ..++.+.... +.+...+.-. ...+...|.....+-+.+..+..-++++.+.+.|
T Consensus 307 ~~cgvll~R~--------~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l 378 (470)
T PLN02263 307 MPCGVQITRM--------EHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRL 378 (470)
T ss_pred cCEEEEEEeh--------hhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999987 4443332211 1111222222 2333333443335567777777788889999999
Q ss_pred hcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec--ChHHHHHHHHHH
Q 042445 158 KEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV--EPSALENGLGRM 235 (246)
Q Consensus 158 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~--~~~~l~~~~~~l 235 (246)
++. ++..+..|.... +. |... ++.. ..+|..+.+ .++.+++++.. +.+.+++.++.|
T Consensus 379 ~~~-g~~~~~~p~s~~-V~--f~~p------~~~~------~~~gW~L~~-----~~~~~Hivvmphv~~~~id~fi~DL 437 (470)
T PLN02263 379 REA-GISAMLNELSST-VV--FERP------KDEE------FVRRWQLAC-----QGNIAHVVVMPSVTIEKLDYFLKEL 437 (470)
T ss_pred HhC-CCeEEeCCCceE-EE--EecC------chHH------hhcceEEcc-----CCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 887 565556665333 33 3221 1111 124444433 14568998885 778899998888
Q ss_pred HHHHHHH
Q 042445 236 KAFYDRH 242 (246)
Q Consensus 236 ~~~~~~~ 242 (246)
.+..+..
T Consensus 438 ~~~~~~~ 444 (470)
T PLN02263 438 VEKRSTW 444 (470)
T ss_pred HHHHhhh
Confidence 8776643
No 371
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=97.99 E-value=0.00031 Score=57.81 Aligned_cols=209 Identities=17% Similarity=0.147 Sum_probs=129.3
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccC-Cccc---C---CCCCccccccCC----cccEEEEcccccccccCCc
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG-HLAF---G---NTPFVSMGVFGS----IVPLLTLGSISKRGIVPGL 86 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~-~~~~---~---~~~~~~~~~~~~----~~~~i~~~s~sK~~~~~g~ 86 (246)
.-.|+..|.+.++++.++|++|++.++.|-+-. +-+| . +....++..+.. +..-+ .-|.-|- ++..
T Consensus 197 sagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~-~mS~KKD-~lvn- 273 (471)
T COG3033 197 SAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGC-TMSAKKD-GLVN- 273 (471)
T ss_pred ccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhh-eeecccc-ceec-
Confidence 467899999999999999999999999998522 1111 1 111122222111 11122 2345555 4422
Q ss_pred eE-EEEEeeCCCCCcchhhHHHHHHHH--h----hhcCCCCchHHHHHHHHHhhch-HHHHHHHHHHHHHHHHHHHHHhh
Q 042445 87 RL-GWLVTSDPNGILQDSGIVDSIKIF--L----NISSDPATFIQGAVPQILEKTE-EEFFSKIIDILRETADKCCDRLK 158 (246)
Q Consensus 87 r~-G~i~~~~~~~~~~~~~~~~~l~~~--~----~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~L~ 158 (246)
+ |++...+ +.++ ++...++.. . +.+.+.+.=...+++.-|.+.- .+|+..+.++ .++|.+.|+
T Consensus 274 -mGGfl~~~D-~~~f---Dvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Q----v~YL~~~l~ 344 (471)
T COG3033 274 -MGGFLCFKD-DSFF---DVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQ----VQYLADGLE 344 (471)
T ss_pred -cccEEEecC-ccHH---HHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHH----HHHHHHHHH
Confidence 3 4555555 3333 455555432 1 1222566666677777776543 4777776665 456777887
Q ss_pred cCCCCccccCCCCceEEEEEeccccccCCC----ChHHHHHHHHHhcCeEEecCCCcCC-------------CCeEEEEe
Q 042445 159 EIPCITCPKKPEGSMFVMVKLNYSLLEGIN----SDMEFALKLAKEESVIVLPGITVGL-------------KDWLRITF 221 (246)
Q Consensus 159 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~ll~~~gi~v~pg~~f~~-------------~~~iRls~ 221 (246)
+. |+. +..|-||.-++++...- ++.++ ....++.++-++.||-...-..|.. -+-+|+++
T Consensus 345 ~~-GVp-i~~paGGHavfvda~~~-lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRlti 421 (471)
T COG3033 345 EA-GVP-IVQPAGGHAVFVDAGKF-LPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTI 421 (471)
T ss_pred hc-CCe-eEecCCCceEEeehhhh-cCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEec
Confidence 77 776 67899999999764321 11111 2456778888999998876444432 26799999
Q ss_pred ec---ChHHHHHHHHHHHHHHHH
Q 042445 222 AV---EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 222 ~~---~~~~l~~~~~~l~~~~~~ 241 (246)
.. +.+.++-.++.+++..++
T Consensus 422 pRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 422 PRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred cccccchhHHHHHHHHHHHHHhc
Confidence 83 888899999888887654
No 372
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=97.93 E-value=0.0016 Score=55.43 Aligned_cols=213 Identities=11% Similarity=0.083 Sum_probs=118.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHH-cCCEEEEccccCCcccC-CCCCccccccCCcccEEEEccc-ccccccCCceE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKK-LGIMVIANEVYGHLAFG-NTPFVSMGVFGSIVPLLTLGSI-SKRGIVPGLRL 88 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~-~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~i~~~s~-sK~~~~~g~r~ 88 (246)
+.+-|+.|+|.+ +++++|.++.-+ +++.+.+|-+-++|... +.....-..+... .+..+..- .|. |+.=-..
T Consensus 223 v~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p-~V~Sisa~~HKY-Gl~~~G~ 297 (491)
T KOG1383|consen 223 VGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVP-GVTSISADGHKY-GLAPAGS 297 (491)
T ss_pred EEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCC-CceeEeecccee-eeeecCc
Confidence 677888899987 678999998888 99999999998888753 2111111122211 12222222 244 5544447
Q ss_pred EEEEeeCCCCCcchhhHH---HHHHH-HhhhcCCCCchHHHHH---HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042445 89 GWLVTSDPNGILQDSGIV---DSIKI-FLNISSDPATFIQGAV---PQILEKTEEEFFSKIIDILRETADKCCDRLKEIP 161 (246)
Q Consensus 89 G~i~~~~~~~~~~~~~~~---~~l~~-~~~~~~~~~~~~q~~~---~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 161 (246)
||++=.+.+-.-. ++. +.+-. +.+++.+.|..+...+ +++++-+.+-|. +..+...+....+.+.+++++
T Consensus 298 ~~vl~r~k~~~~~--q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~-~~~~~ive~~~~l~egie~i~ 374 (491)
T KOG1383|consen 298 SWVLYRNKELLPH--QLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYR-ENTQNIVETARKLREGIENIK 374 (491)
T ss_pred EEEEEcccccccc--eEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhhhccc
Confidence 8887766421110 111 11111 1122333333322222 234443334444 445557889999999999988
Q ss_pred CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHHHHHHHHHHHHH
Q 042445 162 CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSALENGLGRMKAF 238 (246)
Q Consensus 162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~l~~~~~~l~~~ 238 (246)
++..+-.|.-++.. +....+ +.-.+..+|.+.|..+ |+.-|+ ..+.+++.. .++..++.+.-|+++
T Consensus 375 ~i~i~gkp~vs~~~---~~s~~~-----~i~elsd~l~~~GW~l-nalq~P--~a~Hi~vt~~~~~~~~A~~~v~Di~~~ 443 (491)
T KOG1383|consen 375 GIKIVGKPLVSFIL---FGSNDV-----NIFELSDLLRKKGWIL-NALQFP--AAIHICVTRVHAREDVADRFVADIRKV 443 (491)
T ss_pred cceecCCCcEEEEE---ccCCcc-----chhhhhHHHHhcCcCc-cccCCC--CceEEEEEeeeccHHHHHHHHHHHHHH
Confidence 88765554433322 332221 4556677888999854 444443 355555552 344456667777777
Q ss_pred HHHHh
Q 042445 239 YDRHA 243 (246)
Q Consensus 239 ~~~~~ 243 (246)
++++.
T Consensus 444 ~~el~ 448 (491)
T KOG1383|consen 444 VEELK 448 (491)
T ss_pred HHHHH
Confidence 77665
No 373
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=97.69 E-value=0.0075 Score=53.16 Aligned_cols=207 Identities=13% Similarity=0.065 Sum_probs=110.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWL 91 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i 91 (246)
+++|| +--|+++. .++|++.+.++++|+..|+++....... +..+-... ....++...|..|. ++++..+.+
T Consensus 171 vitnp-TYdGv~~n---~~~i~~~~~~~~a~v~~deah~~~~~~~-~~l~~~~~-~~~~~~~tqS~HK~--l~alSQaS~ 242 (557)
T COG1982 171 VITNP-TYDGVCYN---LRKIVELLHHYGAWVLYDEAHPAHFDFS-PMLPESAL-NGGADFVTQSTHKL--LAALSQASM 242 (557)
T ss_pred EEecC-ccceEeec---HHHHHHHHhhcCceEEhhhcCccccccc-ccCcchhh-hcCceEEEechhhh--hhhhhhhHH
Confidence 88888 88899988 7788888899999999999877433111 11111111 12357999999999 455555655
Q ss_pred EeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhh-------chHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 042445 92 VTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEK-------TEEEFFSKIIDILRETADKCCDRLKEIPCIT 164 (246)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 164 (246)
+--.++.. -..+++..+.....+.||. +.+.+.+.. ......++..+..-+.++.+.+..++++++.
T Consensus 243 iHv~~~~~----~~~~r~nea~~~h~STSPs--Y~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~ 316 (557)
T COG1982 243 IHVKDGRA----VNHERFNEALMMHQSTSPS--YPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFP 316 (557)
T ss_pred HhhCCCcc----CCHHHHHHHHHHHccCCch--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 54442111 2245555553332233332 222223321 1112222223444556666666666666665
Q ss_pred cccCCC----Cc----------eEE------EEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecC
Q 042445 165 CPKKPE----GS----------MFV------MVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFAVE 224 (246)
Q Consensus 165 ~~~~~~----~g----------~~~------~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~ 224 (246)
.+.++. .+ .++ .+..+. .|+ ....+...|+++||...-.. +..+-+-+..-
T Consensus 317 ~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~---~Gi--pg~~v~~~L~e~gii~e~~~----d~~~lll~~~~ 387 (557)
T COG1982 317 VLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPE---FGI--PGAIVAKYLREHGIIPEETG----DYSNLLLFSPG 387 (557)
T ss_pred eccccccCCcccccccccccccceeccccEEEEecCC---CCC--cHHHHHHHHHHcCCeeeecC----CceeeEEeeec
Confidence 443332 11 111 111111 133 45566778888888765533 23333333332
Q ss_pred hHHHHHHHHHHHHHHHH
Q 042445 225 PSALENGLGRMKAFYDR 241 (246)
Q Consensus 225 ~~~l~~~~~~l~~~~~~ 241 (246)
..+....++.|.++.+.
T Consensus 388 ~gk~~~lv~~L~~f~r~ 404 (557)
T COG1982 388 IGKWQTLVDRLLEFKRR 404 (557)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 25566667777777663
No 374
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=97.67 E-value=0.0038 Score=58.56 Aligned_cols=89 Identities=12% Similarity=0.006 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCC
Q 042445 135 EEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK 214 (246)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 214 (246)
...-++++.++...+...+.+.|++. |+.. ..+ .+|-.+.+.... .+.+.+.+.+.++||.+... .+
T Consensus 336 G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~-~~~--~fF~~~~v~~~~-----~~~~~i~~~~~~~gi~l~~~----~~ 402 (939)
T TIGR00461 336 GPKGLKNIARRIHSLTSILANGLEND-PHEL-INK--TWFDTLTVKVGN-----GISSELLKAAEEFNINLRAV----DT 402 (939)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-cCC--CccceEEEEeCC-----CCHHHHHHHHHHCCCeeeec----CC
Confidence 46778888888899999999999885 7763 333 445444343220 13455566778899987652 25
Q ss_pred CeEEEEeec--ChHHHHHHHHHHH
Q 042445 215 DWLRITFAV--EPSALENGLGRMK 236 (246)
Q Consensus 215 ~~iRls~~~--~~~~l~~~~~~l~ 236 (246)
+.+++|+.. +.++++..++.+.
T Consensus 403 ~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 403 TTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred CEEEEEeecCCCHHHHHHHHHHhc
Confidence 789999984 8888999888884
No 375
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=97.64 E-value=1.9e-05 Score=64.70 Aligned_cols=138 Identities=14% Similarity=0.059 Sum_probs=72.5
Q ss_pred cccCCcCCC-ccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHV-GSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
++++|+|-. |+++|.+++++|.++|++||+.++.|-+--.-.... ...++..+...-.++++ |++|..++++ |.
T Consensus 129 ~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~-~~~~~~e~~~~~D~v~~-~~tK~~g~~~---Ga 203 (290)
T PF01212_consen 129 SLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAA-LGVSLAEIAAGADSVSF-GGTKNGGAPG---GA 203 (290)
T ss_dssp EEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCH-HHHHHHHHHTTSSEEEE-ETTSTT-SSS---EE
T ss_pred EEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhc-ccccHHHHhhhCCEEEE-EEEccccccc---ce
Confidence 788886653 999999999999999999999999998632111000 00112222222234444 5999988776 77
Q ss_pred EEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHH-----HHHHhhchHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042445 91 LVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAV-----PQILEKTEEEFFSKIIDILRETADKCCDRLKEIPCI 163 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 163 (246)
+++.++ ++++..+.. +.....+....-.++ ...+.. .+.+ ......-.++.+.+.+.|+.+++.
T Consensus 204 vl~~~~-------~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~-l~~~-~~~~~~~~~~A~~La~~l~~~~~~ 273 (290)
T PF01212_consen 204 VLAGNK-------EFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRA-LELW-LERARHANAMAKRLAAGLEALGGV 273 (290)
T ss_dssp EEEESH-------HHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCH-EECS-HHHHHCHHHHHHCHHHCHHEECEE
T ss_pred EEEech-------HHHHHHHHHHHHhccCeeecceeeeechhhHHHHHH-HHhh-HHHHHHHHHHHHHHHHHHHHCCCc
Confidence 666553 656554433 222211110001111 011110 1222 333444567788888888887543
No 376
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=97.56 E-value=0.0088 Score=50.37 Aligned_cols=195 Identities=15% Similarity=0.104 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC---ccc-EEEEcccccccccCCceEEEEEeeCCCCCcchh
Q 042445 28 FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS---IVP-LLTLGSISKRGIVPGLRLGWLVTSDPNGILQDS 103 (246)
Q Consensus 28 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---~~~-~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~ 103 (246)
++++|.++|++||+..|+..+|+-=.. ..+..+.. .++ -+++.|+.|-|..| ..-+.+.++++
T Consensus 173 ~i~~IakiC~~~~IPhlvNnAYgvQ~~-----~~~~~i~~a~~~GRvda~vqS~dkNF~VP-vGgai~As~~~------- 239 (389)
T PF05889_consen 173 DIEEIAKICKEYDIPHLVNNAYGVQSS-----KCMHLIQQAWRVGRVDAFVQSTDKNFMVP-VGGAIMASFDP------- 239 (389)
T ss_dssp -HHHHHHHHHHHT--EEEEGTTTTT-H-----HHHHHHHHHHHHSTCSEEEEEHHHHHCEE-SSHEEEEESSH-------
T ss_pred cHHHHHHHHHHcCCceEEccchhhhHH-----HHHHHHHHHHhcCCcceeeeecCCCEEec-CCCcEEEecCH-------
Confidence 599999999999999999999984110 11111111 112 27899999998653 22244444442
Q ss_pred hHHHHHHHH-hhhcCCCCchHHHHHHHHHhhchH---HHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEe
Q 042445 104 GIVDSIKIF-LNISSDPATFIQGAVPQILEKTEE---EFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKL 179 (246)
Q Consensus 104 ~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~ 179 (246)
..+..+... .+-. ...........++.-+.. .-+.++.+.+....+.+.+.-++.+ -.....|.-...+-+.+
T Consensus 240 ~~i~~vs~~YpGRa--s~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee~~-e~ll~~p~N~is~a~tl 316 (389)
T PF05889_consen 240 SGILAVSKEYPGRA--SASPSLDLFITLLSLGCTGYGALLKERKASFPYLKERLKKWAEEVG-ERLLETPRNHISMAFTL 316 (389)
T ss_dssp HHHHHHHHTSHSHB--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEBSSSTT-SSEEEEE-
T ss_pred HHHHHHHHHhhhhh--hcccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCCCCCCeeEEEEC
Confidence 677777654 3222 233334455555554332 2333333333333333333333332 11123444344444444
Q ss_pred ccccccCCC-ChHHHHHHHHHhcCeEE----ecCCCc---C----CCCeEEEEee--cChHHHHHHHHHHHHHHH
Q 042445 180 NYSLLEGIN-SDMEFALKLAKEESVIV----LPGITV---G----LKDWLRITFA--VEPSALENGLGRMKAFYD 240 (246)
Q Consensus 180 ~~~~~~~~~-~~~~~~~~ll~~~gi~v----~pg~~f---~----~~~~iRls~~--~~~~~l~~~~~~l~~~~~ 240 (246)
+. +.... .+.-++...|..+||.- .|+..+ + ...++-++-+ .+.++++..+++|.+.++
T Consensus 317 ~~--l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 317 DT--LYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp TT--CCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred cc--chhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 42 11111 24567777788887642 222111 0 1377877544 599999999999999875
No 377
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=97.48 E-value=0.0083 Score=49.74 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=95.7
Q ss_pred EEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-h------------h-hcCCCCchHHHHHHHHHhhch-H
Q 042445 72 LTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-L------------N-ISSDPATFIQGAVPQILEKTE-E 136 (246)
Q Consensus 72 i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~------------~-~~~~~~~~~q~~~~~~l~~~~-~ 136 (246)
++..+.-|.+|..| ++-++.++ ++++++..+ . + +..+++.+..+.....+.... .
T Consensus 193 viyagaQKnlGpaG--ltvvIvr~--------~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~ 262 (365)
T COG1932 193 VIYAGAQKNLGPAG--LTVVIVRP--------DLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQ 262 (365)
T ss_pred eEEEehhhccCccc--eEEEEEcH--------HHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHc
Confidence 55667889999999 88888888 777777553 1 1 111334444444444443211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcccc--CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCC
Q 042445 137 EFFSKIIDILRETADKCCDRLKEIPCITCPK--KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK 214 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 214 (246)
--++...++-+++.+.+.+.+++.+.....+ ...+-+.+.+.+.+..+ +..++. .++++|+...-|. ...
T Consensus 263 GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~~l-----d~~fv~-eae~~gl~~lkGh--r~v 334 (365)
T COG1932 263 GGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDAEL-----DKGFVA-EAEAAGLIYLKGH--RSV 334 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcHHH-----HHHHHH-HHHHcCCceeccc--cCC
Confidence 2367777788899999999998864322222 23456777777765543 455555 4667777776662 235
Q ss_pred CeEEEEeec--ChHHHHHHHHHHHHHHHH
Q 042445 215 DWLRITFAV--EPSALENGLGRMKAFYDR 241 (246)
Q Consensus 215 ~~iRls~~~--~~~~l~~~~~~l~~~~~~ 241 (246)
+.+|.|+.. +.++++.+++-+..+.++
T Consensus 335 gGmRasiynA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 335 GGLRASIYNAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred CceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence 679999985 777777766666666544
No 378
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=97.45 E-value=0.00087 Score=55.54 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=60.3
Q ss_pred hhhhhhhccc-----cccCCcCCCccCCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEE
Q 042445 2 ELINQDITRE-----FSDFQVFHVGSGFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTL 74 (246)
Q Consensus 2 e~~~~~~~~~-----~~~~p~NPtG~~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (246)
|.+++.++++ +.-+-+.-+=..++.+++++++++.++. ++++++|++|.+|+-...|. .++.+ ++.
T Consensus 145 ~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~----~vGAD---l~a 217 (403)
T PF06838_consen 145 EAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQEPT----EVGAD---LMA 217 (403)
T ss_dssp HHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GG----GGT-S---EEE
T ss_pred HHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccccCcc----ccchh---hee
Confidence 3455555543 3333333333478889999999999865 79999999999998553221 22322 889
Q ss_pred cccccccccCCc-eEEEEEeeCCCCCcchhhHHHHHHHHh
Q 042445 75 GSISKRGIVPGL-RLGWLVTSDPNGILQDSGIVDSIKIFL 113 (246)
Q Consensus 75 ~s~sK~~~~~g~-r~G~i~~~~~~~~~~~~~~~~~l~~~~ 113 (246)
||+-|.-|+.=. --||+++.. +++++.....
T Consensus 218 GSLIKNpGGgiAptGGYIaGr~--------~lVe~~a~RL 249 (403)
T PF06838_consen 218 GSLIKNPGGGIAPTGGYIAGRK--------DLVERAAYRL 249 (403)
T ss_dssp EETTSGGGTTT-SS-EEEEESH--------HHHHHHHHHH
T ss_pred ccceeCCCCCccCcCCEEechH--------HHHHHHHhhh
Confidence 999998654211 238888888 9999887653
No 379
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=97.43 E-value=0.003 Score=53.78 Aligned_cols=147 Identities=18% Similarity=0.141 Sum_probs=83.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCcc-ccccCCcccEEEEcccccccccCCceEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVS-MGVFGSIVPLLTLGSISKRGIVPGLRLGW 90 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~g~r~G~ 90 (246)
+.+.....||.+ +++++|.++|+++|+|+.+|-+|++..+-.+.... ...+..- .-|.+ ++.|.+++| ..+|+
T Consensus 199 vat~Gtt~~Ga~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~a-dSit~-d~HK~l~~P-~~~~~ 272 (373)
T PF00282_consen 199 VATAGTTNTGAI---DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERA-DSITI-DPHKWLGVP-YGCGV 272 (373)
T ss_dssp EEEBS-TTTSBB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGE-SEEEE-ETTTTTS-S-SS-EE
T ss_pred eccCCCcccccc---cCHHHHhhhccccceeeeecccccccccccccccccccccccc-ccccc-chhhhhcCC-cccee
Confidence 445555566666 67999999999999999999999984322111211 1222211 22333 478996544 68899
Q ss_pred EEeeCCCCCcchhhHHHHHH----HHh--------------hhcCCCCchHHHHHHHHHh--hchHHHHHHHHHHHHHHH
Q 042445 91 LVTSDPNGILQDSGIVDSIK----IFL--------------NISSDPATFIQGAVPQILE--KTEEEFFSKIIDILRETA 150 (246)
Q Consensus 91 i~~~~~~~~~~~~~~~~~l~----~~~--------------~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~~~~~~~~~ 150 (246)
++..+. ..+.... .+. +.+...|. ...++..++. ....+-+++..+...+.+
T Consensus 273 ~l~r~~-------~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a 344 (373)
T PF00282_consen 273 LLVRDK-------SDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELA 344 (373)
T ss_dssp EEESSG-------GGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecc-------cchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 998874 2222211 010 01112233 3333333333 223456777777778899
Q ss_pred HHHHHHhhcCCCCccccCCCCc
Q 042445 151 DKCCDRLKEIPCITCPKKPEGS 172 (246)
Q Consensus 151 ~~l~~~L~~~~~~~~~~~~~~g 172 (246)
+.+.+.|++.+++..+.+|.-+
T Consensus 345 ~~l~~~l~~~~~~el~~~~~~~ 366 (373)
T PF00282_consen 345 RYLADRLRKDPRFELVNEPDLN 366 (373)
T ss_dssp HHHHHHHHTSTTEEESSTTSSS
T ss_pred HHHHHHHHhCCCEEEEcCCCce
Confidence 9999999998887754444433
No 380
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=97.27 E-value=0.00096 Score=55.57 Aligned_cols=148 Identities=20% Similarity=0.162 Sum_probs=53.7
Q ss_pred hhhhhhccc----cccCCcCCCccCC-ChhhHHHHHHHHHHcCCEEEEccccCCcc----cCCCCCccccccCCcccEEE
Q 042445 3 LINQDITRE----FSDFQVFHVGSGF-SGSFVSPIAETAKKLGIMVIANEVYGHLA----FGNTPFVSMGVFGSIVPLLT 73 (246)
Q Consensus 3 ~~~~~~~~~----~~~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~----~~~~~~~~~~~~~~~~~~i~ 73 (246)
.++++|+++ +-.+++|-.-.-+ ..-.++++++++++||+++++|-.=+.+. ++-.+-+++...-...--++
T Consensus 128 Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV 207 (367)
T PF03841_consen 128 DYEKAITENTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLV 207 (367)
T ss_dssp ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEE
T ss_pred cccccccccccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEE
Confidence 456677766 3445566632211 12258999999999999999997532111 11001112222222223377
Q ss_pred EcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHH-hhhcCCCCchHHHHHHHHHhhch-----------HHHHHH
Q 042445 74 LGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIF-LNISSDPATFIQGAVPQILEKTE-----------EEFFSK 141 (246)
Q Consensus 74 ~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~-----------~~~~~~ 141 (246)
+.|=.|.+|+|- .|.+++.. +++++++.. ..-...+......++.+.|.... ...+..
T Consensus 208 ~fSGdKlLGGPQ--aGiI~Gkk--------~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~ 277 (367)
T PF03841_consen 208 TFSGDKLLGGPQ--AGIIVGKK--------ELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQ 277 (367)
T ss_dssp EEETTSSSSS-S---EEEEEEH--------HHHHHHHHHHHTTT-B--HHHHHHHHHHHHH-------------------
T ss_pred EEECCCcCCCCC--eEEEEeCH--------HHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 788899988876 69999998 999999875 22233678888877777776322 123555
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 042445 142 IIDILRETADKCCDRLKEI 160 (246)
Q Consensus 142 ~~~~~~~~~~~l~~~L~~~ 160 (246)
..+.++++.+.+...|+..
T Consensus 278 ~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 278 SLEELRARAERLAAQLKAA 296 (367)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 6666777777777777663
No 381
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.058 Score=46.22 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeEEEEee
Q 042445 143 IDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWLRITFA 222 (246)
Q Consensus 143 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~ 222 (246)
.+..-+.++.+.+.+.+-+-+.. ..+.-=-.+++++.... ..+..++.++.....|.+.|... ...-.||++++
T Consensus 376 iR~h~~La~~fe~lv~~d~~FE~-~~~~~lgLvcFRlk~~N----~~ne~Ll~~in~~g~i~l~~~~l-~gk~vlRf~V~ 449 (511)
T KOG0628|consen 376 IREHVRLAKEFETLVRADPRFEI-VNKRILGLVCFRLKGDN----EINEALLNRLNSSGRIHLVPASL-HGKFVLRFAVC 449 (511)
T ss_pred HHHHHHHHHHHHHHhhcCCccee-ecccccceeEEeecCCc----HHHHHHHHHHHhcCcEEEEEeee-cceEEEEEEec
Confidence 33334445555555544334442 23322222333444321 12677788888888898888553 23557999998
Q ss_pred c---ChHHHHHHHHHHHHHHHHHh
Q 042445 223 V---EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 223 ~---~~~~l~~~~~~l~~~~~~~~ 243 (246)
. ++++++++.+.|.+..+++.
T Consensus 450 s~~t~~~di~~a~~~I~~~a~~l~ 473 (511)
T KOG0628|consen 450 SPLTNESDIDEAWKIIFEAADELF 473 (511)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4 78899999999988877644
No 382
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0062 Score=51.30 Aligned_cols=119 Identities=17% Similarity=0.087 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHHH
Q 042445 28 FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVD 107 (246)
Q Consensus 28 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~ 107 (246)
..++++++|+++|+++++|..=....-........-..+ --+++.|-.|.+++| +-|.|++.+ ++++
T Consensus 175 ~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~G---aDLV~~SgdKllgGP--qaGii~GkK--------elI~ 241 (395)
T COG1921 175 SEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALG---ADLVSFSGDKLLGGP--QAGIIVGKK--------ELIE 241 (395)
T ss_pred cHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcC---CCEEEEecchhcCCC--ccceEechH--------HHHH
Confidence 367899999999999999987654432222222222222 237888889997755 588999988 9999
Q ss_pred HHHHH-hhhcCCCCchHHHHHHHHHhhch----HHHHHHHHHHHHHHHHHHHHHhhc
Q 042445 108 SIKIF-LNISSDPATFIQGAVPQILEKTE----EEFFSKIIDILRETADKCCDRLKE 159 (246)
Q Consensus 108 ~l~~~-~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~~L~~ 159 (246)
++++. ......+.....+++.++|+.-. ..+.....+.+....+.+.+..+.
T Consensus 242 ~lq~~~l~Ralrv~K~tla~l~~aLe~y~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 298 (395)
T COG1921 242 KLQSHPLKRALRVDKETLAALEAALELYLQPEILGERLRTLRLLTQPAEALLAQAGR 298 (395)
T ss_pred HHHhhhhhhhhhcCcHhHHHHHHHHHHHcCchhhhhhhHHHHhhccHHHHHHHHhhh
Confidence 99876 33444788888888888887422 122333333344444555554444
No 383
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=96.89 E-value=0.015 Score=49.25 Aligned_cols=203 Identities=13% Similarity=0.065 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCc-cccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhh
Q 042445 26 GSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFV-SMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSG 104 (246)
Q Consensus 26 ~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~ 104 (246)
-+++..|+++|++|++|+.+|.+|.+...=...+. -+...... +-+ -.+..|.. ++.+.++..+.... .
T Consensus 269 FDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera-~Sv-twnpHK~~-gaplqCsa~l~r~~-------g 338 (510)
T KOG0629|consen 269 FDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERA-NSV-TWNPHKLM-GAPLQCSAFLTREE-------G 338 (510)
T ss_pred cCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCcccc-Cce-eecHHHhh-cCcchhhHHHHHHH-------H
Confidence 36899999999999999999999997443221111 11222221 212 23456885 44467777666653 4
Q ss_pred HHHHHHHHh-h----------hcC-CCCchHHHH-----HHHHHh--hchHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445 105 IVDSIKIFL-N----------ISS-DPATFIQGA-----VPQILE--KTEEEFFSKIIDILRETADKCCDRLKEIPCITC 165 (246)
Q Consensus 105 ~~~~l~~~~-~----------~~~-~~~~~~q~~-----~~~~l~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 165 (246)
++.+..+.. . ..+ +..-..|-. ..-+|- .....-.++...++-+.++++.+.|++-++..-
T Consensus 339 ll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~ 418 (510)
T KOG0629|consen 339 LLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEM 418 (510)
T ss_pred HHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhccccee
Confidence 444443321 0 000 111111111 111222 111234566677788899999999998766543
Q ss_pred ccCCCCceEEEE-EeccccccCCCChHHH----------HHHHHHhcCeEEecCCCcCC-CCeEEEEeec---ChHHHHH
Q 042445 166 PKKPEGSMFVMV-KLNYSLLEGINSDMEF----------ALKLAKEESVIVLPGITVGL-KDWLRITFAV---EPSALEN 230 (246)
Q Consensus 166 ~~~~~~g~~~~~-~~~~~~~~~~~~~~~~----------~~~ll~~~gi~v~pg~~f~~-~~~iRls~~~---~~~~l~~ 230 (246)
+..++.-+..+. ...++.+++...+.+. +.....+.|..-..-...+. ++++|+.++. +..+++-
T Consensus 419 l~~~~pe~~nv~fw~vp~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~df 498 (510)
T KOG0629|consen 419 LFELEPEHVNVCFWYVPPSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDF 498 (510)
T ss_pred hhcCCCceEEEeeccCchHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHH
Confidence 444333322222 1222233333333222 22223344432221111111 7899998885 5566777
Q ss_pred HHHHHHHH
Q 042445 231 GLGRMKAF 238 (246)
Q Consensus 231 ~~~~l~~~ 238 (246)
.++-|++.
T Consensus 499 lldEIerl 506 (510)
T KOG0629|consen 499 LLDEIERL 506 (510)
T ss_pred HHHHHHHh
Confidence 76666554
No 384
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=96.44 E-value=0.24 Score=42.78 Aligned_cols=191 Identities=16% Similarity=0.114 Sum_probs=89.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccccc----CCce
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIV----PGLR 87 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~g~r 87 (246)
++.+| |-.|.+-+ +++|.++++++|.++++ -+ ....... ..+...++. -|++++ +|.||. .|=-
T Consensus 202 ~vq~P-n~~G~~ed---~~~i~~~~h~~gal~~~-~a-d~~aL~~--l~~Pge~GA---DI~vg~-~Q~fg~p~~~GGP~ 269 (429)
T PF02347_consen 202 MVQNP-NTFGVFED---IKEIADIAHAAGALVIV-GA-DPNALGG--LKSPGEYGA---DIVVGE-HQTFGIPMGFGGPG 269 (429)
T ss_dssp EEESS--TTSB--T---HHHHHHHHHHTT-EEEE-CG-GCCGCCT--C--GGGGT----SEEEEC-CTTTT---CCC-S-
T ss_pred EeecC-CCCceEee---HHHHHHHHHHcCCEEEE-ec-CHHHHhC--cCChhhcCc---cEEeeC-CCCCcccCCCCCCC
Confidence 78899 88898844 99999999999988886 22 1112211 111112221 144554 555442 2223
Q ss_pred EEEEEeeCCCCCcchhhHHHHH----------------------------HHHh-hhcCCCCchHH-HHHHHHHhhchHH
Q 042445 88 LGWLVTSDPNGILQDSGIVDSI----------------------------KIFL-NISSDPATFIQ-GAVPQILEKTEEE 137 (246)
Q Consensus 88 ~G~i~~~~~~~~~~~~~~~~~l----------------------------~~~~-~~~~~~~~~~q-~~~~~~l~~~~~~ 137 (246)
.|++.+.+ +++..+ ++.+ ..+.+.|.... .++..++.....+
T Consensus 270 ~G~~a~~~--------~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~ 341 (429)
T PF02347_consen 270 AGFFAVRE--------DLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPE 341 (429)
T ss_dssp -EEEEE-G--------GGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHH
T ss_pred eeeEEEhh--------hhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHH
Confidence 66776665 333222 1111 11112232222 2334455544578
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCCeE
Q 042445 138 FFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKDWL 217 (246)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~i 217 (246)
-+++..+....++.++.+.|+++.++. + .+..+|=++..... . +.+.+ +.++++.-.-...+...+.+
T Consensus 342 GL~~iA~~~~~~A~yl~~~L~~~~~~~-~--~~~~f~e~v~~~~~-------~-~~~~~-l~~~~~~~gl~~~~~~~~~~ 409 (429)
T PF02347_consen 342 GLREIAERIHLNAHYLAERLKKIYGLP-F--DNPFFFEFVVVFSK-------D-KEVEE-LLKRGIEGGLNLRYPDDGAL 409 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTBEC-S--SSSSBSSEEEEESS---------HHHHH-HHHTT----EEEGGG-SSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc-c--CCCCceeeeeecCC-------c-HHHHH-HHHHHHhcCCCccccCCCeE
Confidence 899999999999999999999863333 2 23334444323221 2 22223 22333322111111225566
Q ss_pred EEEeec--ChHHHHHHHHH
Q 042445 218 RITFAV--EPSALENGLGR 234 (246)
Q Consensus 218 Rls~~~--~~~~l~~~~~~ 234 (246)
-+|+.- +.++++..++.
T Consensus 410 li~~TE~~t~edid~lv~~ 428 (429)
T PF02347_consen 410 LICVTETRTKEDIDRLVEA 428 (429)
T ss_dssp EEE--TT--HHHHHHHHH-
T ss_pred EEEccCCCCHHHHHHHHhc
Confidence 677763 66677766654
No 385
>PRK12566 glycine dehydrogenase; Provisional
Probab=96.40 E-value=0.28 Score=46.46 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCC
Q 042445 135 EEEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK 214 (246)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 214 (246)
..+-++++.++...+...+.+.|++. |+.. . ...+|=-+.+.... ..+.+.....+.||.++--. +
T Consensus 350 Gp~Gl~~ia~~~~~~a~~l~~~l~~~-g~~~-~--~~~fF~~~~v~~~~------~~~~~~~~a~~~~~n~r~~~----~ 415 (954)
T PRK12566 350 GPEGLKRIAQRVHRLTAILAAGLEAK-GIKR-L--NRHFFDTLTLEVGG------AQAAIIESAEAARINLRILG----R 415 (954)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-c--cCCccceEEEEccC------CHHHHHHHHHHCCCeeEEeC----C
Confidence 35668888888888999999999884 7763 2 22566555554321 23444556777888876532 5
Q ss_pred CeEEEEeec--ChHHHHHHHHHHH
Q 042445 215 DWLRITFAV--EPSALENGLGRMK 236 (246)
Q Consensus 215 ~~iRls~~~--~~~~l~~~~~~l~ 236 (246)
+.+.+|+.. +.+++...+..+.
T Consensus 416 ~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 416 GRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHhc
Confidence 667788873 7788888888773
No 386
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=95.41 E-value=0.23 Score=40.13 Aligned_cols=154 Identities=17% Similarity=0.219 Sum_probs=93.7
Q ss_pred EEEEcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHh-------------hhcCCCCchHHHHHHHHHhhchH-
Q 042445 71 LLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFL-------------NISSDPATFIQGAVPQILEKTEE- 136 (246)
Q Consensus 71 ~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~~~q~~~~~~l~~~~~- 136 (246)
-+++.+.-|.+|++|+.+ ++..+ +++....... +.+.+++.++.+++--.++...+
T Consensus 197 gvi~aGAQKN~G~aG~Tv--vivr~--------dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~ 266 (370)
T KOG2790|consen 197 GVIFAGAQKNVGPAGVTV--VIVRK--------DLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEK 266 (370)
T ss_pred ceEEeccccccCccccEE--EEEeh--------hhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhc
Confidence 366777889999998554 44445 5554433221 12224455555555444443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC-ccccCC--CCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCC
Q 042445 137 EFFSKIIDILRETADKCCDRLKEIPCI-TCPKKP--EGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGL 213 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~ 213 (246)
--+....+.-.++.+.+.+.+.+..|+ .+.+.| .+-|-+.+++.+..+ +.+++....+++ +.-.-|. ..
T Consensus 267 GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d~L-----e~eFLkeA~~~~-mv~LKGh--RS 338 (370)
T KOG2790|consen 267 GGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKDEL-----EAEFLKEAAKEH-MVQLKGH--RS 338 (370)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecchHH-----HHHHHHHHHHhh-hhccccc--cc
Confidence 236666677778999999999986554 233444 345666777765543 667777655544 3333333 23
Q ss_pred CCeEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 214 KDWLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 214 ~~~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
-+.+|-|+-. +-++.+.+++-++++.+.+
T Consensus 339 VGGiRASlYNAisv~~~q~L~~~m~~F~k~h 369 (370)
T KOG2790|consen 339 VGGIRASLYNAISVEEVQKLAAFMKEFQKKH 369 (370)
T ss_pred cccchhhhhccccHHHHHHHHHHHHHHHHhc
Confidence 6889999874 8888888887777776554
No 387
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=93.38 E-value=4.7 Score=34.70 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC-CCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCC
Q 042445 136 EEFFSKIIDILRETADKCCDRLKEIP-CITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLK 214 (246)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~ 214 (246)
..-++++.++..+....+.+.|++.+ |+.. .. + .+|--+.+..+. ...+.+.......|+.++.-. +
T Consensus 354 p~GLk~iA~r~~~~a~~la~~L~~~~~g~~~-~~-~-~fFdt~~v~~~~-----~~~~~l~~~~~~~G~~L~~~~----~ 421 (450)
T COG0403 354 PQGLKEIAERIHRLAAYLAAGLKEIGAGVEL-VF-D-HFFDTFTVRVPE-----EVAEALLAAAIAGGINLRRVD----A 421 (450)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCceEe-cc-c-cceeeEEEecch-----hHHHHHHHHHHhcCCceeeec----C
Confidence 67899999999999999999999754 4542 22 2 566555454321 133444445556677665422 3
Q ss_pred CeEEEEeec--ChHHHHHHHHHHHH
Q 042445 215 DWLRITFAV--EPSALENGLGRMKA 237 (246)
Q Consensus 215 ~~iRls~~~--~~~~l~~~~~~l~~ 237 (246)
+.+=+++.. +.++++..++.+..
T Consensus 422 ~~~~ia~tEt~t~~~i~~l~~~~~~ 446 (450)
T COG0403 422 DTVLIALTETTTKEDIDALVAAFGG 446 (450)
T ss_pred CceEEEeecccCHHHHHHHHHHHhh
Confidence 444455552 45666666655543
No 388
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.14 Score=41.71 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCChhhHHHHHHHHHHc--CCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCce-EEEEEeeCCCCC
Q 042445 23 GFSGSFVSPIAETAKKL--GIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLR-LGWLVTSDPNGI 99 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~--~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r-~G~i~~~~~~~~ 99 (246)
.++.+++++++.+.++- |+++++|++|.+|.-...+. ..+. -+.-+|+-|.=|..=.. -||+.+..
T Consensus 182 S~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt----~vGa---DliAGSLIKNpGGgiaktGGYiaGk~---- 250 (416)
T COG4100 182 SLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPT----HVGA---DLIAGSLIKNPGGGIAKTGGYIAGKA---- 250 (416)
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCcc----ccch---hhhccceeeCCCCceeeccceeechH----
Confidence 56778999999999866 79999999999998553221 1221 16677887773321122 26777776
Q ss_pred cchhhHHHHHH
Q 042445 100 LQDSGIVDSIK 110 (246)
Q Consensus 100 ~~~~~~~~~l~ 110 (246)
++++...
T Consensus 251 ----~~ve~~~ 257 (416)
T COG4100 251 ----ELVEAAA 257 (416)
T ss_pred ----HHHHhhc
Confidence 7776554
No 389
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=93.34 E-value=4.9 Score=34.76 Aligned_cols=205 Identities=13% Similarity=0.004 Sum_probs=105.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEccccccc------ccCC
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRG------IVPG 85 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~------~~~g 85 (246)
+++|| |-.|+. ++.+.+|+++..++|..+..|.+-..-..+- ...+...--|+=--+.|.| |+||
T Consensus 209 MiTnP-sT~GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~------~rPGd~G~DV~HlNLHKTF~iPHGGGGPG 279 (496)
T COG1003 209 MITNP-STLGVF--EEDIREICEIVHEAGGQVYYDGANLNAIVGL------ARPGDMGFDVVHLNLHKTFCIPHGGGGPG 279 (496)
T ss_pred EeccC-cccccc--hhhHHHHHHHHHHcCCEEEecCcchhhhhcc------ccccccccceEEeecccccccCCCCCCCC
Confidence 89999 888875 5789999999999999999997543211110 0000000001111133333 2233
Q ss_pred ceEEEEEeeCCCCCcchhhHHHHHH----------------------HHhhhcCCCCchHHHHHHHHHhhchHHHHHHHH
Q 042445 86 LRLGWLVTSDPNGILQDSGIVDSIK----------------------IFLNISSDPATFIQGAVPQILEKTEEEFFSKII 143 (246)
Q Consensus 86 ~r~G~i~~~~~~~~~~~~~~~~~l~----------------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 143 (246)
.|-|.+.. .+...+- ....++. |......+..++.....+-+++.-
T Consensus 280 --~GPvgVk~--------~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~G--s~~il~~a~~YI~~mG~~GL~~as 347 (496)
T COG1003 280 --AGPVGVKA--------HLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYG--SASILPIAWAYIRMMGADGLKQAS 347 (496)
T ss_pred --CCceehHh--------hccccCCCCcccCCCccccccCCCCccceeeccccC--cchHHHHHHHHHHHHhHHHHHHHH
Confidence 33333322 1111111 0111111 222222223333333455566666
Q ss_pred HHHHHHHHHHHHHhhc-CCCCccccCCC--CceEEEEEecccc-ccCCCChHHHHHHHHHhcCeEEecCCCcC--CCCeE
Q 042445 144 DILRETADKCCDRLKE-IPCITCPKKPE--GSMFVMVKLNYSL-LEGINSDMEFALKLAKEESVIVLPGITVG--LKDWL 217 (246)
Q Consensus 144 ~~~~~~~~~l~~~L~~-~~~~~~~~~~~--~g~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gi~v~pg~~f~--~~~~i 217 (246)
+.---+++++.+.|+. .+ +- + .+. -..=+.++..... --|+ +...+.+.|.++|+. .|-.+|. ..+.+
T Consensus 348 e~AvLNANYia~rL~~~y~-~~-y-~~~~~~~HE~ild~r~l~~~~Gv--~~~DvAKrLlD~GfH-aPT~~FPliV~~tL 421 (496)
T COG1003 348 EVAVLNANYIARRLKGYYP-VP-Y-TGENRVAHECILDARPLKKETGV--RALDVAKRLLDYGFH-APTMYFPLIVAGTL 421 (496)
T ss_pred HHHHHhHHHHHHHhhhcCc-cc-c-CCCCcceeEEEeechHhHhhcCC--cHHHHHHHHHhcCCC-CCcccCccccccce
Confidence 6666788889999986 32 21 1 222 1222222232110 0122 444456667799985 4556676 37777
Q ss_pred EEEeec--ChHHHHHHHHHHHHHHHHHh
Q 042445 218 RITFAV--EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 218 Rls~~~--~~~~l~~~~~~l~~~~~~~~ 243 (246)
-+=.+. +.++|++.++++.+..++.+
T Consensus 422 MIEPTEsEsk~eLDrf~dami~I~~Ea~ 449 (496)
T COG1003 422 MIEPTESESKEELDRFIDAMIAIREEAD 449 (496)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 776664 56678888888877766544
No 390
>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]
Probab=92.38 E-value=0.075 Score=42.38 Aligned_cols=218 Identities=13% Similarity=0.098 Sum_probs=107.9
Q ss_pred cccCCcCCCccCC--ChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc-EEEEcccccccccCCceE
Q 042445 12 FSDFQVFHVGSGF--SGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP-LLTLGSISKRGIVPGLRL 88 (246)
Q Consensus 12 ~~~~p~NPtG~~~--~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~i~~~s~sK~~~~~g~r~ 88 (246)
+++-. .-|.... +++.+++|..+|..|++.-|+.++|+.-...- ..-......-++ --++.|+-|.|..|= -
T Consensus 158 ilci~-sttscfapr~pd~leaiaaica~~diphivnnayglqsee~--i~~iaa~~~~grida~vqsldknf~vpv--g 232 (432)
T KOG3843|consen 158 ILCIH-STTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEEC--IHKIAAAAECGRIDAFVQSLDKNFMVPV--G 232 (432)
T ss_pred EEEEe-ecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHH--HHHHHHHhhhccHHHHHHHhhhcceeec--c
Confidence 44444 3343333 44789999999999999999999998432110 000000000011 145788999987652 1
Q ss_pred EEEEeeCCCCCcchhhHHHHHHHHhhhcCCCCchHHHHHHHHHhhchH---HHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 042445 89 GWLVTSDPNGILQDSGIVDSIKIFLNISSDPATFIQGAVPQILEKTEE---EFFSKIIDILRETADKCCDRLKEIPCITC 165 (246)
Q Consensus 89 G~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 165 (246)
|.+++.=.+ ..+..+.+..+ +...+.++...+...|..+.. +-..+..+.+...++.+.+.-+.++...
T Consensus 233 gaiia~fk~------n~iq~iak~yp-grasa~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~~ae~~~e~l- 304 (432)
T KOG3843|consen 233 GAIIAAFKD------NFIQEIAKMYP-GRASASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIKFAEAIGECL- 304 (432)
T ss_pred hhHhhHhHH------HHHHHHHHhCC-CccccCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-
Confidence 333332111 44444444322 223344555566666665442 3344445555555555554444443222
Q ss_pred ccCCCCceEEEEEeccccccCC-CChHHHHHHHHHhcCe---EEecCCCcC------------C------CCeEEEE--e
Q 042445 166 PKKPEGSMFVMVKLNYSLLEGI-NSDMEFALKLAKEESV---IVLPGITVG------------L------KDWLRIT--F 221 (246)
Q Consensus 166 ~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gi---~v~pg~~f~------------~------~~~iRls--~ 221 (246)
+..|+....+-+.+.... .- .....+.-..|-.+|| -|+|.+.+. . -+++-.+ +
T Consensus 305 ~~~p~n~is~amtl~ti~--~~k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~~~yln~a~ai 382 (432)
T KOG3843|consen 305 LETPENEISLAMTLKTID--EAKDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQHCAYLNAACAI 382 (432)
T ss_pred hcCCCchhhhhhhhccCC--hHHhhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCchhHhhHHHhc
Confidence 344543333332222110 00 0122333344445544 345533221 1 1333333 3
Q ss_pred ecChHHHHHHHHHHHHHHHHHhh
Q 042445 222 AVEPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 222 ~~~~~~l~~~~~~l~~~~~~~~~ 244 (246)
+..+.++++.+.+|.++++++.+
T Consensus 383 gm~~hdld~~~~rl~~~~a~~~k 405 (432)
T KOG3843|consen 383 GMKDHDLDEFFNRLDRCLAAFRK 405 (432)
T ss_pred CCcHhHHHHHHHHHHHHHHHHHH
Confidence 34788899999999888876654
No 391
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=83.59 E-value=36 Score=31.27 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=27.1
Q ss_pred cccCCcCCCccCCChhhHHHHHHHH---HHcCC--EEEEccccCCcc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETA---KKLGI--MVIANEVYGHLA 53 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~---~~~~~--~ii~De~y~~~~ 53 (246)
+.+-..-.+|.+=+ +++|.++| +++|+ ++.+|-+|+++.
T Consensus 283 VataGTT~~GaiDp---l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~ 326 (608)
T TIGR03811 283 VGVVGSTEEGAVDG---IDKIVALRNKLMKEGIYFYLHVDAAYGGYG 326 (608)
T ss_pred EEEcCCcCCcccCC---HHHHHHHHHHHHHcCCceeEeeeccccchh
Confidence 44445557777755 55555555 77887 699999999853
No 392
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=79.30 E-value=3.3 Score=37.74 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=33.6
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN 56 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~ 56 (246)
||...=++++++++++.|.+.|+-||.|=+|..|.-++
T Consensus 206 p~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~ 243 (628)
T COG0296 206 PTSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDG 243 (628)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCc
Confidence 56667788999999999999999999999999888654
No 393
>smart00642 Aamy Alpha-amylase domain.
Probab=66.72 E-value=9.3 Score=28.55 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.5
Q ss_pred ChhhHHHHHHHHHHcCCEEEEccccCCcc
Q 042445 25 SGSFVSPIAETAKKLGIMVIANEVYGHLA 53 (246)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~ 53 (246)
+.++++++++.|+++|+.||.|-++....
T Consensus 68 t~~d~~~lv~~~h~~Gi~vilD~V~NH~~ 96 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVILDVVINHTS 96 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 56899999999999999999999877544
No 394
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=63.42 E-value=13 Score=25.66 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhcCeEEecCCCcC---CCCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 190 DMEFALKLAKEESVIVLPGITVG---LKDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 190 ~~~~~~~ll~~~gi~v~pg~~f~---~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
+...+...|.++|+.+.--+.-+ ..+-.-|=++.++++++++++.|++..++..
T Consensus 12 Da~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~R~ 68 (109)
T PF06153_consen 12 DADDLSDALNENGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKKRE 68 (109)
T ss_dssp HHHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--EE
T ss_pred hHHHHHHHHHHCCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcCce
Confidence 56667777889998886533322 2344445566799999999999999876543
No 395
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=61.00 E-value=12 Score=31.49 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=24.3
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIAN 46 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~D 46 (246)
+.|-.+|.+++++|++.|+++|+-||-.
T Consensus 67 ~~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 67 GPGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 4566899999999999999999988843
No 396
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=60.14 E-value=6.1 Score=24.43 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=20.2
Q ss_pred CcCCCccCCChhhHHHHHHHHHHcCC
Q 042445 16 QVFHVGSGFSGSFVSPIAETAKKLGI 41 (246)
Q Consensus 16 p~NPtG~~~~~~~~~~l~~~~~~~~~ 41 (246)
.+-|.|.+ +.++++.|.+++++|+.
T Consensus 14 ~~~~~G~i-~~~~l~~la~ia~~yg~ 38 (69)
T PF03460_consen 14 IRIPGGRI-SAEQLRALAEIAEKYGD 38 (69)
T ss_dssp EB-GGGEE-EHHHHHHHHHHHHHHST
T ss_pred EeCCCEEE-CHHHHHHHHHHHHHhCC
Confidence 33577887 88999999999999873
No 397
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=59.08 E-value=11 Score=31.94 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.5
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIAN 46 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~D 46 (246)
|.|-.+|.+++++|++.|+++|+-||-.
T Consensus 78 ~~~~~YT~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 78 PYGGFYTQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred ccCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 4567899999999999999999988854
No 398
>PLN03244 alpha-amylase; Provisional
Probab=58.92 E-value=16 Score=34.35 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=33.4
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG 55 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~ 55 (246)
-|+...-++++++++++.|.+.|+-||.|-+|..+.-+
T Consensus 432 ApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d 469 (872)
T PLN03244 432 AASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 469 (872)
T ss_pred ccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCc
Confidence 56667778999999999999999999999999877654
No 399
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=57.41 E-value=14 Score=30.56 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIAN 46 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~D 46 (246)
+.|-.+|.+++++|++.|+++|+-||-.
T Consensus 64 ~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 64 SPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4456899999999999999999988843
No 400
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=56.95 E-value=21 Score=32.23 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=29.9
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 54 (246)
|.+..-+.++++++++.|+++|+-||.|-+|.+...
T Consensus 152 ~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~ 187 (542)
T TIGR02402 152 PHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGP 187 (542)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCC
Confidence 444455678999999999999999999999987643
No 401
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=56.57 E-value=14 Score=33.79 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHcCCEEEEccccCCcc
Q 042445 26 GSFVSPIAETAKKLGIMVIANEVYGHLA 53 (246)
Q Consensus 26 ~~~~~~l~~~~~~~~~~ii~De~y~~~~ 53 (246)
.++++++++.|++.|+-||.|-+|.+..
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV~NH~~ 255 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVVYNHTY 255 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEcCCcc
Confidence 4789999999999999999999998664
No 402
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=56.41 E-value=26 Score=26.19 Aligned_cols=80 Identities=10% Similarity=-0.012 Sum_probs=44.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCccc--E-EEEcccccccccCCceE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVP--L-LTLGSISKRGIVPGLRL 88 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~--~-i~~~s~sK~~~~~g~r~ 88 (246)
+.-+.+||| .++-+++-+++.-+..--+++..||.-... .|.+-..+..+...+. + =.+.=.|+...+.|.|+
T Consensus 28 IS~S~GNPT--~lsG~elV~lIk~a~~DPV~VMfDD~G~~g--~G~GE~Al~~v~~h~~IeVLG~iAVASnT~~~~g~~V 103 (180)
T PF14097_consen 28 ISQSAGNPT--PLSGEELVELIKQAPHDPVLVMFDDKGFIG--EGPGEQALEYVANHPDIEVLGAIAVASNTHGAEGTKV 103 (180)
T ss_pred EeccCCCCC--cCCHHHHHHHHHhCCCCCEEEEEeCCCCCC--CCccHHHHHHHHcCCCceEEEEEEEEecCCCCCceEe
Confidence 666778997 677778877776665445888889863321 1222223332222111 1 11222356655677777
Q ss_pred EEEEeeC
Q 042445 89 GWLVTSD 95 (246)
Q Consensus 89 G~i~~~~ 95 (246)
-+.+-.+
T Consensus 104 D~sidr~ 110 (180)
T PF14097_consen 104 DVSIDRD 110 (180)
T ss_pred EEEEcCC
Confidence 6665544
No 403
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=56.14 E-value=10 Score=30.81 Aligned_cols=33 Identities=24% Similarity=0.113 Sum_probs=27.5
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEccccCCcccC
Q 042445 23 GFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG 55 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~ 55 (246)
.=+.++++++++.|+++|+.||.|-++.+....
T Consensus 48 ~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 48 FGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp TBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred cchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 345789999999999999999999998755533
No 404
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=51.26 E-value=18 Score=30.27 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=23.8
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEE
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIA 45 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~ 45 (246)
+.|-.+|.+++++|++.|+++|+-||-
T Consensus 74 ~~~~~YT~~di~eiv~yA~~rgI~vIP 100 (326)
T cd06564 74 ANDGYYTKEEFKELIAYAKDRGVNIIP 100 (326)
T ss_pred CCCCcccHHHHHHHHHHHHHcCCeEec
Confidence 456789999999999999999998873
No 405
>PHA02938 hypothetical protein; Provisional
Probab=50.39 E-value=1.2e+02 Score=24.79 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=51.0
Q ss_pred EcccccccccCCceEEEEEeeCCCCCcchhhHHHHHHHHhh-hcCCCCchHHHHHHHHHhhchH---HHHHHHHHHHHHH
Q 042445 74 LGSISKRGIVPGLRLGWLVTSDPNGILQDSGIVDSIKIFLN-ISSDPATFIQGAVPQILEKTEE---EFFSKIIDILRET 149 (246)
Q Consensus 74 ~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~ 149 (246)
+++|||-. ..+ -|+..|. +++++++.+.. -+.+.-.+...++..+|.-.++ -|+....+++.+.
T Consensus 53 ~~gf~~k~-~~~---v~l~lpk--------diieki~sya~skgls~r~vae~~v~dfl~l~deqk~iyi~ke~~rl~e~ 120 (361)
T PHA02938 53 NYGFSKKD-LIR---VYLSLPK--------DIIEKIRSYASSKGLSIRRVAESAVDDFLTLSDEQKKIYIDKEKRRLSEK 120 (361)
T ss_pred cCCcchhh-hhh---eeeeCCH--------HHHHHHHHHHhhcCccHHHHHHHHHHHHhcccchhheeehhHHHHHHHHH
Confidence 56788773 343 4777888 99999999844 3556677888899999886553 4566666666665
Q ss_pred HH------HHHHHhhcC
Q 042445 150 AD------KCCDRLKEI 160 (246)
Q Consensus 150 ~~------~l~~~L~~~ 160 (246)
|+ ...+.|+.+
T Consensus 121 rk~kld~e~~~qlle~i 137 (361)
T PHA02938 121 RKRKLDEERLTQLLEAI 137 (361)
T ss_pred hhccccHHHHHHHHHHH
Confidence 54 444555543
No 406
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.17 E-value=21 Score=31.36 Aligned_cols=27 Identities=26% Similarity=0.079 Sum_probs=23.6
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEE
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIA 45 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~ 45 (246)
+.|-.+|.+++++|++.|+++|+.||-
T Consensus 89 ~~~g~YT~~di~eiv~yA~~rgI~VIP 115 (445)
T cd06569 89 SGSGYYSRADYIEILKYAKARHIEVIP 115 (445)
T ss_pred ccCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 446689999999999999999998874
No 407
>COG4050 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.09 E-value=76 Score=22.20 Aligned_cols=45 Identities=9% Similarity=0.248 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHHHhhc
Q 042445 190 DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDRHAEK 245 (246)
Q Consensus 190 ~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~~~~~ 245 (246)
..+++..+++++||.+. ++-+..++++-...+..|..+++.+.++
T Consensus 106 TNEl~~ylvR~k~iPiL-----------elkYP~s~Eea~~~VnkI~~FL~sLe~~ 150 (152)
T COG4050 106 TNELCVYLVRRKGIPIL-----------ELKYPRSEEEAIDFVNKIANFLKSLEAQ 150 (152)
T ss_pred cchHHHHHhhhcCCceE-----------EEeCCCcHHHHHHHHHHHHHHHHhhhhh
Confidence 45566666777776553 5666668888899999999999987754
No 408
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=49.97 E-value=26 Score=21.61 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=18.5
Q ss_pred CC-hhhHHHHHHHHHHcCCEEEEc
Q 042445 24 FS-GSFVSPIAETAKKLGIMVIAN 46 (246)
Q Consensus 24 ~~-~~~~~~l~~~~~~~~~~ii~D 46 (246)
++ ++++++|.++.++-|.++|+|
T Consensus 47 ~~~~~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 47 LSEPEEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred CCchHHHHHHHHHHHcCCEEEEeC
Confidence 45 488999999999888888765
No 409
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=49.04 E-value=1.4e+02 Score=24.21 Aligned_cols=94 Identities=16% Similarity=0.078 Sum_probs=47.8
Q ss_pred CChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC-cccEEEEcccccccccCCceEEEEEeeCCCCCcch
Q 042445 24 FSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS-IVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQD 102 (246)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~ 102 (246)
+|.++-.++.+.|++||+-.| .++....+..-+..+.. ....+|.-|.. |.+|.|......-+
T Consensus 131 LP~ee~~~~~~~~~~~gi~~I------~lvaPtt~~~rl~~i~~~a~GFiY~vs~~---GvTG~~~~~~~~~~------- 194 (265)
T COG0159 131 LPPEESDELLKAAEKHGIDPI------FLVAPTTPDERLKKIAEAASGFIYYVSRM---GVTGARNPVSADVK------- 194 (265)
T ss_pred CChHHHHHHHHHHHHcCCcEE------EEeCCCCCHHHHHHHHHhCCCcEEEEecc---cccCCCcccchhHH-------
Confidence 445555666666666664443 22222111111222211 11234443332 56777766332233
Q ss_pred hhHHHHHHHHhh----hcCCCCchHHHHHHHHHhhc
Q 042445 103 SGIVDSIKIFLN----ISSDPATFIQGAVPQILEKT 134 (246)
Q Consensus 103 ~~~~~~l~~~~~----~~~~~~~~~q~~~~~~l~~~ 134 (246)
+++++++.+.+ .+++++...|........++
T Consensus 195 -~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~ADG 229 (265)
T COG0159 195 -ELVKRVRKYTDVPVLVGFGISSPEQAAQVAEAADG 229 (265)
T ss_pred -HHHHHHHHhcCCCeEEecCcCCHHHHHHHHHhCCe
Confidence 78888887644 45688888877765555543
No 410
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=48.25 E-value=27 Score=24.25 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=24.6
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIA 45 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 45 (246)
++|.| +|.|......+-..|.+.|-+++++.+.
T Consensus 74 VInt~-~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 74 VIFFR-DPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred EEEcC-CCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 77877 7756654356778899999999887764
No 411
>PLN02960 alpha-amylase
Probab=48.03 E-value=34 Score=32.74 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=32.9
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG 55 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~ 55 (246)
-|++..-++++++++++.|++.|+-||.|-+|..+..+
T Consensus 457 a~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d 494 (897)
T PLN02960 457 AVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 494 (897)
T ss_pred CcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCCc
Confidence 46666777899999999999999999999999977644
No 412
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=47.01 E-value=24 Score=31.32 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=26.2
Q ss_pred ChhhHHHHHHHHHHcCCEEEEccccCCcc
Q 042445 25 SGSFVSPIAETAKKLGIMVIANEVYGHLA 53 (246)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~ 53 (246)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~D~V~NH~~ 107 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYADVVLNHKA 107 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 67899999999999999999999988655
No 413
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.74 E-value=25 Score=29.24 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.5
Q ss_pred ccCCChhhHHHHHHHHHHcCCEEEE
Q 042445 21 GSGFSGSFVSPIAETAKKLGIMVIA 45 (246)
Q Consensus 21 G~~~~~~~~~~l~~~~~~~~~~ii~ 45 (246)
|-.+|.+++++|++.|+++|+-||-
T Consensus 62 ~~~yT~~di~elv~yA~~rgI~vIP 86 (311)
T cd06570 62 GLYYTQEQIREVVAYARDRGIRVVP 86 (311)
T ss_pred CCccCHHHHHHHHHHHHHcCCEEEE
Confidence 5579999999999999999998874
No 414
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=46.69 E-value=23 Score=30.01 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=23.4
Q ss_pred CccCCChhhHHHHHHHHHHcCCEEEEc
Q 042445 20 VGSGFSGSFVSPIAETAKKLGIMVIAN 46 (246)
Q Consensus 20 tG~~~~~~~~~~l~~~~~~~~~~ii~D 46 (246)
.|-.+|.+++++|++.|+++|+-||-.
T Consensus 63 ~~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 63 PSEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 356799999999999999999988843
No 415
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=46.52 E-value=30 Score=32.13 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=42.7
Q ss_pred CCCccCCChh------hHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccc
Q 042445 18 FHVGSGFSGS------FVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSIS 78 (246)
Q Consensus 18 NPtG~~~~~~------~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 78 (246)
-|.+..-|++ +++++++.+...|+.|+.|-+|....-+.. ..+..++..++-.+..+-+
T Consensus 296 apssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~--d~l~~fdGid~~~Yf~~~~ 360 (757)
T KOG0470|consen 296 APSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK--DGLNMFDGIDNSVYFHSGP 360 (757)
T ss_pred cccccccCCCcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC--CcchhccCcCCceEEEeCC
Confidence 4778888888 999999999999999999999998775322 2233355555445555444
No 416
>PRK05402 glycogen branching enzyme; Provisional
Probab=46.45 E-value=33 Score=32.28 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=30.6
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 54 (246)
|....-+.++++++++.|+++|+-||.|-++.++..
T Consensus 307 i~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~ 342 (726)
T PRK05402 307 PTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPK 342 (726)
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 455566788999999999999999999999987653
No 417
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=46.40 E-value=34 Score=32.25 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=30.2
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 54 (246)
|+...-++++++++++.|+++|+.||.|-+|.....
T Consensus 292 ~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 292 VSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 344455678999999999999999999999987664
No 418
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=45.87 E-value=2.6e+02 Score=26.22 Aligned_cols=87 Identities=10% Similarity=0.050 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEEecCCCcCCCC
Q 042445 136 EEFFSKIIDILRETADKCCDRLKEIPCITCPKKPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIVLPGITVGLKD 215 (246)
Q Consensus 136 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 215 (246)
.+-+++..++.....-.+...|++. |... . .-.||=.+.+..+. +.+.+...+.+++|-++--. ++
T Consensus 390 p~gL~~IArrvh~~T~~l~~~l~~a-ghel-~--~k~fFDTLkI~~~~------s~~~~l~rA~~~~iNlr~~e----d~ 455 (1001)
T KOG2040|consen 390 PHGLKEIARRVHNLTLILAEGLKNA-GHEL-Q--HKPFFDTLKIRCGC------SAEEVLDRAAKRQINLRLVE----DG 455 (1001)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-chhh-c--cccccceEEEEecC------cHHHHHHHHHhhcCceEEee----cC
Confidence 4567777777777777888888876 3332 2 22377777776552 45555666667777654322 67
Q ss_pred eEEEEeec--ChHHHHHHHHHHH
Q 042445 216 WLRITFAV--EPSALENGLGRMK 236 (246)
Q Consensus 216 ~iRls~~~--~~~~l~~~~~~l~ 236 (246)
.|-+++-. ++++++..+..+.
T Consensus 456 tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 456 TIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred ceEEeecccccHHHHHHHHHHHc
Confidence 77788773 6778888877764
No 419
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=45.66 E-value=41 Score=31.00 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=30.1
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 54 (246)
|.+..-+.++++++++.|+++|+-||.|-+|.+...
T Consensus 198 ~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~ 233 (613)
T TIGR01515 198 PTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPK 233 (613)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCC
Confidence 444556678999999999999999999999887653
No 420
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=45.59 E-value=18 Score=30.38 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.4
Q ss_pred cCCChhhHHHHHHHHHHcCCEEEEc
Q 042445 22 SGFSGSFVSPIAETAKKLGIMVIAN 46 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~ii~D 46 (246)
..+|.+++++|++.|+++|+-||-.
T Consensus 68 ~~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 68 GYYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp SEBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred ccCCHHHHHHHHHHHHHcCCceeee
Confidence 3899999999999999999888843
No 421
>PRK12313 glycogen branching enzyme; Provisional
Probab=44.60 E-value=41 Score=31.06 Aligned_cols=36 Identities=19% Similarity=0.079 Sum_probs=29.8
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 54 (246)
|....-+.++++++++.|+++|+-||.|-++.+...
T Consensus 212 i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~ 247 (633)
T PRK12313 212 PTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPK 247 (633)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 333455678999999999999999999999887653
No 422
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=44.52 E-value=23 Score=23.02 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHcCCEEEEccccCCcc
Q 042445 27 SFVSPIAETAKKLGIMVIANEVYGHLA 53 (246)
Q Consensus 27 ~~~~~l~~~~~~~~~~ii~De~y~~~~ 53 (246)
+.-++|.++++++|+.++.|..-....
T Consensus 27 ~~A~~I~~~A~e~~VPi~~~~~LAr~L 53 (82)
T TIGR00789 27 EVAERIIEIAKKHGIPIVEDPDLVDVL 53 (82)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHH
Confidence 356899999999999999998655333
No 423
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=43.85 E-value=36 Score=20.66 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=22.5
Q ss_pred CcCCCccCCChhhHHHHHHHHHHcCCEEEEccccC
Q 042445 16 QVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG 50 (246)
Q Consensus 16 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~ 50 (246)
|..|.|...+.++++...+-.-+-+.+.+.+..|.
T Consensus 25 ~~~~~~~~~s~~eL~~fL~~lv~e~~L~~~~G~Yk 59 (60)
T PF08672_consen 25 PKDPGGYDISLEELQEFLDRLVEEGKLECSGGSYK 59 (60)
T ss_dssp -GGG--TT--HHHHHHHHHHHHHTTSEE--TTEEE
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCcEEecCCEEe
Confidence 44778889999999999998777788877777663
No 424
>PRK14706 glycogen branching enzyme; Provisional
Probab=41.25 E-value=42 Score=31.06 Aligned_cols=36 Identities=22% Similarity=0.115 Sum_probs=30.3
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 54 (246)
|++..-+.++++++++.|++.|+-||.|-+|..+..
T Consensus 209 ~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~ 244 (639)
T PRK14706 209 PTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPT 244 (639)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEEecccccCc
Confidence 444555778999999999999999999999987653
No 425
>PLN00196 alpha-amylase; Provisional
Probab=41.11 E-value=34 Score=29.90 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=26.1
Q ss_pred CChhhHHHHHHHHHHcCCEEEEccccCCcc
Q 042445 24 FSGSFVSPIAETAKKLGIMVIANEVYGHLA 53 (246)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~ii~De~y~~~~ 53 (246)
=+.++++++++.|+++|+.||.|-++.+..
T Consensus 89 Gt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 89 GNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 456899999999999999999999877654
No 426
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=41.11 E-value=41 Score=29.09 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=24.0
Q ss_pred cCCChhhHHHHHHHHHHc-----CCEEEEccccCC
Q 042445 22 SGFSGSFVSPIAETAKKL-----GIMVIANEVYGH 51 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~-----~~~ii~De~y~~ 51 (246)
++-..++++++++-+++. ..++++||+|..
T Consensus 82 v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 82 VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc
Confidence 456678999999988644 489999999984
No 427
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=40.37 E-value=82 Score=18.87 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 191 MEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 191 ~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
...+...|.+.||.+.... +.-..+++..++++.+++++.|.+.+
T Consensus 18 ~~~if~aL~~~~I~v~~~~----~Se~~is~~v~~~~~~~av~~Lh~~f 62 (64)
T cd04937 18 MAKIVGALSKEGIEILQTA----DSHTTISCLVSEDDVKEAVNALHEAF 62 (64)
T ss_pred HHHHHHHHHHCCCCEEEEE----cCccEEEEEEcHHHHHHHHHHHHHHh
Confidence 3445566789999886433 35678899889999999999988765
No 428
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=40.26 E-value=36 Score=24.71 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=25.5
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEcc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANE 47 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De 47 (246)
++|.| .|+|.-....+-..|.+.|-+||+.++..-
T Consensus 79 VInt~-dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l 113 (142)
T PRK05234 79 LIFFR-DPLTAQPHDPDVKALLRLADVWNIPVATNR 113 (142)
T ss_pred EEEec-CCCCCCcccchHHHHHHHHHHcCCCEEcCH
Confidence 77777 566655435567788999999998887654
No 429
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=39.19 E-value=39 Score=26.91 Aligned_cols=32 Identities=34% Similarity=0.285 Sum_probs=24.0
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccC
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYG 50 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~ 50 (246)
-+|.+.+.+.++.|.++.++++..+|+|=+..
T Consensus 65 kiG~l~~~~~v~~i~~~l~~~~~~vV~DPVm~ 96 (246)
T PF08543_consen 65 KIGYLGSAEQVEIIADFLKKPKIPVVLDPVMG 96 (246)
T ss_dssp EE-S-SSHHHHHHHHHHHHHTTTEEEEE---E
T ss_pred EEcccCCchhhhhHHHHHhccCCCEEEecccc
Confidence 47888899999999999998899999986554
No 430
>PRK14705 glycogen branching enzyme; Provisional
Probab=39.17 E-value=52 Score=32.94 Aligned_cols=37 Identities=14% Similarity=0.002 Sum_probs=32.0
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCccc
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 54 (246)
-|++..-+.++++.+++.|++.|+-||.|=+|.++..
T Consensus 806 ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~ 842 (1224)
T PRK14705 806 APTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPK 842 (1224)
T ss_pred CcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 4566677889999999999999999999999997753
No 431
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=38.16 E-value=1.6e+02 Score=21.50 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHhcCeEEec-CCCc
Q 042445 189 SDMEFALKLAKEESVIVLP-GITV 211 (246)
Q Consensus 189 ~~~~~~~~ll~~~gi~v~p-g~~f 211 (246)
|..+.+..|+.+.|..|.| |..|
T Consensus 46 D~NeVLkALc~eAGw~Ve~DGTty 69 (150)
T PF05687_consen 46 DNNEVLKALCREAGWTVEPDGTTY 69 (150)
T ss_pred CHHHHHHHHHHhCCEEEccCCCee
Confidence 4677888999999999988 4433
No 432
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=38.16 E-value=1.5e+02 Score=21.34 Aligned_cols=41 Identities=10% Similarity=0.280 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 190 DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 190 ~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
..++...++++++|.+. -+.+..++++....+.++.++++.
T Consensus 102 tnEL~~~lir~k~iPiL-----------el~YP~~~ee~~~~V~~I~~FL~~ 142 (143)
T PF09885_consen 102 TNELTKYLIRQKGIPIL-----------ELKYPTNEEEAIDFVNKINDFLKS 142 (143)
T ss_pred HHHHHHHHHhhcCCceE-----------EeeCCCChHHHHHHHHHHHHHHhc
Confidence 56777777888887654 355555888899999999999875
No 433
>PF04237 YjbR: YjbR; InterPro: IPR007351 This is a family of uncharacterised proteins.; PDB: 3H9X_D 2KFP_A 2FKI_A 2A1V_A.
Probab=37.34 E-value=95 Score=20.23 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEe-e-cChHHHHHHHHH
Q 042445 190 DMEFALKLAKEESVIVLPGITVGLKDWLRITF-A-VEPSALENGLGR 234 (246)
Q Consensus 190 ~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~-~-~~~~~l~~~~~~ 234 (246)
+.+....+..++ =.+.|+.+++..+|+.+.+ . .+++++.+.++.
T Consensus 42 ~~e~~~~l~~~~-~~~~p~~h~~k~~Wv~v~l~~~v~~~~l~~li~~ 87 (92)
T PF04237_consen 42 DPEEQEALREQY-DGFFPAYHMNKKHWVSVRLDGDVDDEELRELIDE 87 (92)
T ss_dssp -HHHHHHHHHSS-TTEEE-TSS-TTTEEEEETTSSS-HHHHHHHHHH
T ss_pred CHHHHHHHHhhC-CCEEeCCccCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445556666664 3356777888899999999 3 377777776653
No 434
>PRK10785 maltodextrin glucosidase; Provisional
Probab=37.11 E-value=47 Score=30.46 Aligned_cols=29 Identities=10% Similarity=0.338 Sum_probs=25.5
Q ss_pred ChhhHHHHHHHHHHcCCEEEEccccCCcc
Q 042445 25 SGSFVSPIAETAKKLGIMVIANEVYGHLA 53 (246)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~ 53 (246)
+.+++++|++.|+++|+.||.|-++.+..
T Consensus 224 t~~df~~Lv~~aH~rGikVilD~V~NH~~ 252 (598)
T PRK10785 224 GDAALLRLRHATQQRGMRLVLDGVFNHTG 252 (598)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 56899999999999999999999987544
No 435
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=36.80 E-value=26 Score=28.98 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=23.0
Q ss_pred hhhHHHHHHHH-HHcCCEEEEccccCCccc
Q 042445 26 GSFVSPIAETA-KKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 26 ~~~~~~l~~~~-~~~~~~ii~De~y~~~~~ 54 (246)
...++.|+++| +.++..||.||+|..-..
T Consensus 158 ~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 158 RSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred cchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 35789999999 457899999999985443
No 436
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=36.18 E-value=27 Score=23.11 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHcCCEEEEccccCC
Q 042445 28 FVSPIAETAKKLGIMVIANEVYGH 51 (246)
Q Consensus 28 ~~~~l~~~~~~~~~~ii~De~y~~ 51 (246)
--++|++.+++||+.+..|..-.+
T Consensus 33 iAe~II~~Ake~~Vpi~edp~Lv~ 56 (92)
T COG2257 33 IAEKIIEKAKEHGVPIQEDPLLVE 56 (92)
T ss_pred HHHHHHHHHHHcCCCcccCHHHHH
Confidence 468999999999999999975443
No 437
>PRK12568 glycogen branching enzyme; Provisional
Probab=35.84 E-value=57 Score=30.73 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=30.5
Q ss_pred CCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG 55 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~ 55 (246)
|+...-+.++++++++.|++.|+-||.|-++..+..+
T Consensus 311 ~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d 347 (730)
T PRK12568 311 PTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDD 347 (730)
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcc
Confidence 3334456789999999999999999999999877643
No 438
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=35.33 E-value=42 Score=27.73 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.5
Q ss_pred ccCCChhhHHHHHHHHHHcCCEEEE
Q 042445 21 GSGFSGSFVSPIAETAKKLGIMVIA 45 (246)
Q Consensus 21 G~~~~~~~~~~l~~~~~~~~~~ii~ 45 (246)
+-.+|.+++++|.+.|+++|+-||-
T Consensus 54 ~~~yT~~ei~ei~~yA~~~gI~vIP 78 (301)
T cd06565 54 RGAYTKEEIREIDDYAAELGIEVIP 78 (301)
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEEe
Confidence 4569999999999999999998884
No 439
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=35.28 E-value=35 Score=29.56 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=23.0
Q ss_pred CCcCCCccCCChhhHHHHHHHHHHcC
Q 042445 15 FQVFHVGSGFSGSFVSPIAETAKKLG 40 (246)
Q Consensus 15 ~p~NPtG~~~~~~~~~~l~~~~~~~~ 40 (246)
-.+-|.|..++.+++++|++++++|+
T Consensus 85 Rv~~P~G~~~tteqLR~LaDiaekYG 110 (402)
T TIGR02064 85 RVAQPSGKFYSTDYLRQLCDVWEKYG 110 (402)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHhC
Confidence 34568999999999999999999996
No 440
>PLN02361 alpha-amylase
Probab=35.26 E-value=47 Score=28.80 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.5
Q ss_pred CChhhHHHHHHHHHHcCCEEEEccccCCc
Q 042445 24 FSGSFVSPIAETAKKLGIMVIANEVYGHL 52 (246)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~ii~De~y~~~ 52 (246)
-+.++++++++.|+++|+.+|.|-+..+-
T Consensus 73 Gt~~el~~li~~~h~~gi~vi~D~V~NH~ 101 (401)
T PLN02361 73 GSEHLLKSLLRKMKQYNVRAMADIVINHR 101 (401)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEEccccc
Confidence 35689999999999999999999987754
No 441
>PLN02672 methionine S-methyltransferase
Probab=35.09 E-value=75 Score=31.47 Aligned_cols=100 Identities=6% Similarity=0.012 Sum_probs=65.4
Q ss_pred ccCCChhhHHHHHHHHHHcCCEEEEccc-cCCcccCCCCCccccccC---CcccEEEEcccccccccCCceEEEEEeeCC
Q 042445 21 GSGFSGSFVSPIAETAKKLGIMVIANEV-YGHLAFGNTPFVSMGVFG---SIVPLLTLGSISKRGIVPGLRLGWLVTSDP 96 (246)
Q Consensus 21 G~~~~~~~~~~l~~~~~~~~~~ii~De~-y~~~~~~~~~~~~~~~~~---~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~ 96 (246)
+-..+...++.|++.+++.|.+++.|.+ |.+++........+..+. ...+..++.++-|.--.+.+.+.+++..+.
T Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (1082)
T PLN02672 538 FEMRTSTAFEHLLNVTAEIGARLFLDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISENE 617 (1082)
T ss_pred hhhhhHHHHHHHHHHHHhhCcEEEEehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCcH
Confidence 3455667789999999999999999985 334443322222332221 123455566688875569999999999874
Q ss_pred CCCcchhhHHHHHHHHhhh-cCCCCchHHHHH
Q 042445 97 NGILQDSGIVDSIKIFLNI-SSDPATFIQGAV 127 (246)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~ 127 (246)
.+.+.+.+.... .+..+.++|..=
T Consensus 618 -------~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1082)
T PLN02672 618 -------AVLKALSKTGEVLEGRTAIISQFYY 642 (1082)
T ss_pred -------HHHHHHHHHHHhhccchHHHHHHHH
Confidence 677777665442 335677777653
No 442
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=34.84 E-value=47 Score=25.97 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHcCCEEEEccccCCcc-cCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeC
Q 042445 26 GSFVSPIAETAKKLGIMVIANEVYGHLA-FGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSD 95 (246)
Q Consensus 26 ~~~~~~l~~~~~~~~~~ii~De~y~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~ 95 (246)
.+..+++.++|++|++.+|+++-+.--. .+..+. +++..+ .-+....|. ..+++.+|+-+-+.
T Consensus 51 ~~~a~~~~~lc~~~~v~liINd~~dlA~~~~AdGV----HlGq~D--~~~~~ar~~-~~~~~iIG~S~h~~ 114 (211)
T COG0352 51 LALAEKLRALCQKYGVPLIINDRVDLALAVGADGV----HLGQDD--MPLAEAREL-LGPGLIIGLSTHDL 114 (211)
T ss_pred HHHHHHHHHHHHHhCCeEEecCcHHHHHhCCCCEE----EcCCcc--cchHHHHHh-cCCCCEEEeecCCH
Confidence 4556899999999999999998544211 111111 111111 112223455 46778888877754
No 443
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=34.44 E-value=47 Score=26.50 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=26.2
Q ss_pred CCccCCChhhHHHHHHHHHHcCC-EEEEcccc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGI-MVIANEVY 49 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~-~ii~De~y 49 (246)
=+|.+.+.+.++.+++.+++++. .++.|=+.
T Consensus 72 kiG~l~~~~~~~~i~~~~~~~~~~~vVlDPv~ 103 (254)
T TIGR00097 72 KTGMLASAEIVEAVARKLREYPVRPLVVDPVM 103 (254)
T ss_pred EECCcCCHHHHHHHHHHHHhcCCCcEEECCcc
Confidence 47888899999999999999988 68888654
No 444
>PRK09505 malS alpha-amylase; Reviewed
Probab=34.34 E-value=53 Score=30.70 Aligned_cols=30 Identities=17% Similarity=0.373 Sum_probs=26.6
Q ss_pred ChhhHHHHHHHHHHcCCEEEEccccCCccc
Q 042445 25 SGSFVSPIAETAKKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 54 (246)
+.++++++++.|+++|+.||.|-++.+..+
T Consensus 290 t~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~ 319 (683)
T PRK09505 290 TEADLRTLVDEAHQRGIRILFDVVMNHTGY 319 (683)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCCCcc
Confidence 568999999999999999999999876553
No 445
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=34.29 E-value=43 Score=26.74 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHcCCEEEEcccc
Q 042445 27 SFVSPIAETAKKLGIMVIANEVY 49 (246)
Q Consensus 27 ~~~~~l~~~~~~~~~~ii~De~y 49 (246)
+.++++++.|+++|+.+|+|-..
T Consensus 62 ~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 62 ARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEecc
Confidence 57889999999999999998644
No 446
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=34.25 E-value=1.1e+02 Score=18.57 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=31.5
Q ss_pred HHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 193 FALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 193 ~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
.+...|.+.||-+.--. .....+++|+..++++.+++++.|.+.+
T Consensus 20 ki~~~L~~~~I~v~~i~--~~~s~~~is~~V~~~~~~~av~~Lh~~f 64 (66)
T cd04915 20 RGLAALAEAGIEPIAAH--QSMRNVDVQFVVDRDDYDNAIKALHAAL 64 (66)
T ss_pred HHHHHHHHCCCCEEEEE--ecCCeeEEEEEEEHHHHHHHHHHHHHHH
Confidence 44555688888773211 0134578999889999999999997765
No 447
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=32.70 E-value=71 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=23.8
Q ss_pred CccCCChhhHHHHHHHHHHcCCE-EEEccc
Q 042445 20 VGSGFSGSFVSPIAETAKKLGIM-VIANEV 48 (246)
Q Consensus 20 tG~~~~~~~~~~l~~~~~~~~~~-ii~De~ 48 (246)
.|.+.+++-++++++.+++.|.- +++.|.
T Consensus 16 ~~~~T~P~vv~avv~~l~~~g~~~i~i~e~ 45 (206)
T PF04015_consen 16 SGATTHPEVVRAVVEMLKEAGAKEIIIAES 45 (206)
T ss_pred CCccCCHHHHHHHHHHHHHcCCCceEEEeC
Confidence 58899999999999999999875 555553
No 448
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=32.32 E-value=67 Score=31.90 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHcCCEEEEccccCCcc
Q 042445 26 GSFVSPIAETAKKLGIMVIANEVYGHLA 53 (246)
Q Consensus 26 ~~~~~~l~~~~~~~~~~ii~De~y~~~~ 53 (246)
.++++++++.|++.|+-||.|-+|.+..
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~ 581 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTA 581 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 4789999999999999999999997654
No 449
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=32.03 E-value=51 Score=27.73 Aligned_cols=30 Identities=13% Similarity=-0.161 Sum_probs=22.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEE
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIA 45 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 45 (246)
+=-||+| +-+++.++++++.|+++|+.+=+
T Consensus 97 iRINPGN----ig~~e~v~~vv~~ak~~~ipIRI 126 (346)
T TIGR00612 97 VRINPGN----IGFRERVRDVVEKARDHGKAMRI 126 (346)
T ss_pred EEECCCC----CCCHHHHHHHHHHHHHCCCCEEE
Confidence 4446644 45689999999999999877654
No 450
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.91 E-value=1.2e+02 Score=18.20 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=30.2
Q ss_pred HHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 193 FALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 193 ~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
.....|.+.+|.+..-. ...+++|+..+.++.++++..|-+.+
T Consensus 19 ~~~~~L~~~~i~~i~~~----~s~~~is~vv~~~d~~~av~~LH~~f 61 (63)
T cd04920 19 PALEVFGKKPVHLVSQA----ANDLNLTFVVDEDQADGLCARLHFQL 61 (63)
T ss_pred HHHHHHhcCCceEEEEe----CCCCeEEEEEeHHHHHHHHHHHHHHH
Confidence 34445567777664311 45678999889999999999887654
No 451
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=31.79 E-value=67 Score=24.27 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=26.1
Q ss_pred ccCCChhhHHHHHHHHHHcCCEEEEccccCC
Q 042445 21 GSGFSGSFVSPIAETAKKLGIMVIANEVYGH 51 (246)
Q Consensus 21 G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~ 51 (246)
|..++.+.++.|.++.++.+++|+.|-=|.+
T Consensus 30 Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~G 60 (174)
T TIGR00334 30 GSALKDETINLIKKAQKKQGVIILTDPDFPG 60 (174)
T ss_pred CCccCHHHHHHHHHHhhcCCEEEEeCCCCch
Confidence 4557999999999999999999999976553
No 452
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=31.69 E-value=53 Score=27.31 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCC-----EEEEccccCCcccCCCCCcc
Q 042445 30 SPIAETAKKLGI-----MVIANEVYGHLAFGNTPFVS 61 (246)
Q Consensus 30 ~~l~~~~~~~~~-----~ii~De~y~~~~~~~~~~~~ 61 (246)
..|++.+++++. .|=.||+|+++..++..++.
T Consensus 106 ~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE 142 (340)
T COG1088 106 YTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTE 142 (340)
T ss_pred HHHHHHHHHhcccceEEEeccccccccccCCCCCccc
Confidence 567888888873 45579999999876543433
No 453
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=31.42 E-value=66 Score=29.09 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=25.3
Q ss_pred ChhhHHHHHHHHHHcCCEEEEccccCCcc
Q 042445 25 SGSFVSPIAETAKKLGIMVIANEVYGHLA 53 (246)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~ 53 (246)
+.++++++++.|+++|+.||.|-++.+..
T Consensus 74 t~~df~~Lv~~ah~~Gi~vilD~V~NH~s 102 (539)
T TIGR02456 74 TIDDFKDFVDEAHARGMRVIIDLVLNHTS 102 (539)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccCcCC
Confidence 45799999999999999999999887654
No 454
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=31.40 E-value=1.3e+02 Score=23.70 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhcCeEEecCCCcCC-----------------------------CCeEEEEeecChHHHHHHHHHHHHHHH
Q 042445 190 DMEFALKLAKEESVIVLPGITVGL-----------------------------KDWLRITFAVEPSALENGLGRMKAFYD 240 (246)
Q Consensus 190 ~~~~~~~ll~~~gi~v~pg~~f~~-----------------------------~~~iRls~~~~~~~l~~~~~~l~~~~~ 240 (246)
+......+|..+||.+.|...+.. -+.+++.+. ++++++++.+.|.+.+.
T Consensus 11 ~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~-~~~~v~~a~~~l~~~~~ 89 (222)
T PF13549_consen 11 TEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLN-SPEEVREAFERLRERVA 89 (222)
T ss_dssp -HHHHHHHHHTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE--SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCC-CHHHHHHHHHHHHHHHH
Confidence 344556677777777766533320 388999887 77889999999988876
Q ss_pred HH
Q 042445 241 RH 242 (246)
Q Consensus 241 ~~ 242 (246)
++
T Consensus 90 ~~ 91 (222)
T PF13549_consen 90 AH 91 (222)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 455
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=30.83 E-value=1.7e+02 Score=20.76 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=26.4
Q ss_pred CCCccCCCh-hhHHHHHHHHHHcCCEEEEccc
Q 042445 18 FHVGSGFSG-SFVSPIAETAKKLGIMVIANEV 48 (246)
Q Consensus 18 NPtG~~~~~-~~~~~l~~~~~~~~~~ii~De~ 48 (246)
+|+|..+.. .++..+..-..+.|+-|++|.-
T Consensus 12 ~~~G~ri~s~~d~k~~kk~m~~~gIkV~Idkk 43 (132)
T PF15640_consen 12 TPDGQRIMSVKDIKNFKKEMGKRGIKVKIDKK 43 (132)
T ss_pred CCCCcEeeeHHHHHHHHHHHHhCCcEEEECCc
Confidence 688887766 8899888888899999999975
No 456
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=30.66 E-value=76 Score=26.12 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=26.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEcc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANE 47 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De 47 (246)
-..||.-|.|-+|++++.+++. +++|-.+..|-
T Consensus 123 AF~nPtKpIGpfY~~eea~~l~---~~~gw~~keD~ 155 (312)
T COG0549 123 AFLNPTKPIGPFYSEEEAEELA---KEYGWVFKEDA 155 (312)
T ss_pred cccCCCCCCCCCcCHHHHHHHH---hhcCcEEEecC
Confidence 4568888999999999888876 67777777765
No 457
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=30.32 E-value=61 Score=25.44 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=22.8
Q ss_pred CccCCChhhHHHHHHHHHHc-CCEEEEcccc
Q 042445 20 VGSGFSGSFVSPIAETAKKL-GIMVIANEVY 49 (246)
Q Consensus 20 tG~~~~~~~~~~l~~~~~~~-~~~ii~De~y 49 (246)
+|.+.+.+..+.+.++++++ +..+++|=+.
T Consensus 74 ~G~l~~~~~~~~i~~~~~~~~~~~vv~Dpv~ 104 (242)
T cd01169 74 IGMLGSAEIIEAVAEALKDYPDIPVVLDPVM 104 (242)
T ss_pred ECCCCCHHHHHHHHHHHHhCCCCcEEECCce
Confidence 47777788888888888877 7778888543
No 458
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=30.20 E-value=1.1e+02 Score=25.88 Aligned_cols=43 Identities=19% Similarity=0.016 Sum_probs=30.3
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCC
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGN 56 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~ 56 (246)
+-++|.+ |-..+.++.-++++-+++.|+-+++|--|+++-.++
T Consensus 45 vwv~P~~--~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP 87 (332)
T PF07745_consen 45 VWVNPYD--GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADP 87 (332)
T ss_dssp E-SS-TT--TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT
T ss_pred eccCCcc--cccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCC
Confidence 6666644 356788888889999999999999999999877654
No 459
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=30.09 E-value=72 Score=29.90 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=26.6
Q ss_pred ChhhHHHHHHHHHHcCCEEEEccccCCccc
Q 042445 25 SGSFVSPIAETAKKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 54 (246)
+.++++++++.|++.|+.||.|-+|.+...
T Consensus 243 ~~~efk~LV~~~H~~GI~VIlDvV~NHt~~ 272 (688)
T TIGR02100 243 QVAEFKTMVRALHDAGIEVILDVVYNHTAE 272 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCCccC
Confidence 568999999999999999999999986553
No 460
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=30.07 E-value=1.7e+02 Score=19.87 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=19.9
Q ss_pred CCCCceEEEEEeccccccCCCChHHHHHHHHHhcCeEE
Q 042445 168 KPEGSMFVMVKLNYSLLEGINSDMEFALKLAKEESVIV 205 (246)
Q Consensus 168 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v 205 (246)
.|.+++.+-+++. +...+.+.|++.|..+
T Consensus 50 ~~~~~NWi~I~Y~---------~~~~A~rAL~~NG~i~ 78 (100)
T PF05172_consen 50 IPSGGNWIHITYD---------NPLSAQRALQKNGTIF 78 (100)
T ss_dssp E-CCTTEEEEEES---------SHHHHHHHHTTTTEEE
T ss_pred CCCCCCEEEEECC---------CHHHHHHHHHhCCeEE
Confidence 4567777777765 4455677888888865
No 461
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=29.80 E-value=69 Score=29.11 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=26.0
Q ss_pred ChhhHHHHHHHHHHcCCEEEEccccCCccc
Q 042445 25 SGSFVSPIAETAKKLGIMVIANEVYGHLAF 54 (246)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~~ 54 (246)
+.++++++++.|+++|+.||.|-++.+...
T Consensus 79 t~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 79 TLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 567899999999999999999998876543
No 462
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=29.43 E-value=4.9e+02 Score=24.56 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccccCCCC--ceEEEEEeccccc-cCCCChHHHHHHHHHhcCeEEecCCCcCCCC
Q 042445 139 FSKIIDILRETADKCCDRLKEIPCITCPKKPEG--SMFVMVKLNYSLL-EGINSDMEFALKLAKEESVIVLPGITVGLKD 215 (246)
Q Consensus 139 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--g~~~~~~~~~~~~-~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~ 215 (246)
+...-+.---++.++.+.|+..-.+. +..+++ +.=+.+++..-+- .++ +...+.+.|.++|.. .|-..+...+
T Consensus 815 L~~as~~AiLNaNYMakRLe~hYkil-~~~~~~~vaHEFIlD~r~fK~~agi--eavDvAKRL~DYgFH-aPTmswPV~g 890 (1001)
T KOG2040|consen 815 LKDASKIAILNANYMAKRLESHYKIL-FRGENGLVAHEFILDLRPFKKTAGI--EAVDVAKRLMDYGFH-APTMSWPVAG 890 (1001)
T ss_pred cchhhHHHhhhhHHHHHHHhhcccee-EecCCcceeeeeeeechhhccccCC--cHHHHHHHHHhccCC-CCccccccCC
Confidence 33333444457778888888732222 333333 2222333322110 123 344456678899975 3444455578
Q ss_pred eEEEEeec--ChHHHHHHHHHHHHHHHHH
Q 042445 216 WLRITFAV--EPSALENGLGRMKAFYDRH 242 (246)
Q Consensus 216 ~iRls~~~--~~~~l~~~~~~l~~~~~~~ 242 (246)
.+-+-... +.+++++.++++.+.-++.
T Consensus 891 tLMIEPTESE~k~ElDRfcdAliSIreEI 919 (1001)
T KOG2040|consen 891 TLMIEPTESEDKAELDRFCDALISIREEI 919 (1001)
T ss_pred ceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence 88777764 4456777777775554443
No 463
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=29.22 E-value=73 Score=28.85 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=25.3
Q ss_pred ChhhHHHHHHHHHHcCCEEEEccccCCcc
Q 042445 25 SGSFVSPIAETAKKLGIMVIANEVYGHLA 53 (246)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~ 53 (246)
+.++++++++.|+++|+.||.|-+..+..
T Consensus 73 t~~~~~~lv~~ah~~gi~vilD~v~NH~~ 101 (543)
T TIGR02403 73 TMADFEELVSEAKKRNIKIMLDMVFNHTS 101 (543)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 55899999999999999999998876554
No 464
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=28.44 E-value=48 Score=22.15 Aligned_cols=34 Identities=9% Similarity=-0.134 Sum_probs=25.7
Q ss_pred cCCcCCCccCCChhhHHHHHHHHHHcCCEEEEcc
Q 042445 14 DFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANE 47 (246)
Q Consensus 14 ~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De 47 (246)
-|.|-|.|.+.|.+..+.+++........=++++
T Consensus 31 LNhN~PafY~Vpa~~yE~m~e~LeD~eL~~l~~~ 64 (97)
T PRK09778 31 LSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKA 64 (97)
T ss_pred ecCCceeEEEeCHHHHHHHHHHHHhHHHHHHHHH
Confidence 3666899999999999999988876654433443
No 465
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=28.43 E-value=3.6e+02 Score=22.72 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCeEEecCCCcCCCCeEEEEeec---ChHHHHHHHHHHHHHHHHHh
Q 042445 192 EFALKLAKEESVIVLPGITVGLKDWLRITFAV---EPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 192 ~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~---~~~~l~~~~~~l~~~~~~~~ 243 (246)
..+..-|.++|+.+---. ++.||++... +-.++...+..|.++.+..+
T Consensus 413 ~~vfqeL~krGv~~DkR~----PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 413 PKVFQELHKRGVIGDKRR----PNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred hHHHHHHHHcCeeccccC----CCceEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 445666889998754322 7999999773 77888899999988887654
No 466
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=28.41 E-value=93 Score=23.56 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=24.6
Q ss_pred cccCCcCCCccCCChh----hHHHHHHHHHHcCCEEEEccccC
Q 042445 12 FSDFQVFHVGSGFSGS----FVSPIAETAKKLGIMVIANEVYG 50 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~----~~~~l~~~~~~~~~~ii~De~y~ 50 (246)
+.-|| .+.|.+ .++++.++|++.|+.+|+++ |.
T Consensus 28 ~fyNP-----NIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~-Y~ 64 (176)
T PF02677_consen 28 YFYNP-----NIHPYEEYERRLEELKRFAEKLGIPLIEGD-YD 64 (176)
T ss_pred EEeCC-----CCCcHHHHHHHHHHHHHHHHHcCCCEEecC-CC
Confidence 55666 345554 45778889999999999998 66
No 467
>PRK12412 pyridoxal kinase; Reviewed
Probab=27.91 E-value=67 Score=25.89 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCccCCChhhHHHHHHHHHHcCCE-EEEccc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGIM-VIANEV 48 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~~-ii~De~ 48 (246)
=+|.+.+.+.++.+++++++++.. +|.|-+
T Consensus 77 kiG~l~~~~~v~~i~~~~~~~~~~~vv~DPv 107 (268)
T PRK12412 77 KTGMLGSVEIIEMVAETIEKHNFKNVVVDPV 107 (268)
T ss_pred EECCCCCHHHHHHHHHHHHhcCCCCEEECcC
Confidence 478888889999999999988775 787754
No 468
>TIGR03271 methan_mark_5 putative methanogenesis marker protein 5. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=27.74 E-value=2.3e+02 Score=20.28 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 190 DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 190 ~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
..++...++++++|.+. .+.+..++++....+.++.++++.
T Consensus 101 tnEL~~~lir~k~iPiL-----------El~YP~~~e~~~~~V~~i~~FL~~ 141 (142)
T TIGR03271 101 TNELTVFLVRRKDIPIL-----------ELDYPTSEEEGIIFVRKINDFLDS 141 (142)
T ss_pred HHHHHHHHHhhcCCceE-----------EeeCCCChhHHHHHHHHHHHHHhc
Confidence 56777777888887654 355555788899999999999875
No 469
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.01 E-value=2.1e+02 Score=19.46 Aligned_cols=54 Identities=9% Similarity=-0.027 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhcCeEEecCCCcCC---CCeEEEEeecChHHHHHHHHHHHHHHHHHh
Q 042445 190 DMEFALKLAKEESVIVLPGITVGL---KDWLRITFAVEPSALENGLGRMKAFYDRHA 243 (246)
Q Consensus 190 ~~~~~~~ll~~~gi~v~pg~~f~~---~~~iRls~~~~~~~l~~~~~~l~~~~~~~~ 243 (246)
+...+.+.|.++|.-..-...-+. .+.--|-++.+++.++.+...|++..+...
T Consensus 12 da~~l~~~L~d~~fraTkLAsTGGFlkaGNTTfliGved~~vd~~~s~Ike~C~~re 68 (109)
T COG3870 12 DANELEDALTDKNFRATKLASTGGFLKAGNTTFLIGVEDDRVDALRSLIKENCKSRE 68 (109)
T ss_pred cHHHHHHHHHhCCceeEEeeccCceeecCCeEEEEecccchhHHHHHHHHHHhhhHh
Confidence 445556677788876654332221 333345677799999999999999886544
No 470
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=26.79 E-value=83 Score=21.37 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.0
Q ss_pred cCCChhhHHHHHHHHHHcCCEEEE
Q 042445 22 SGFSGSFVSPIAETAKKLGIMVIA 45 (246)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~ii~ 45 (246)
...+.++.++|.++++++|..+.+
T Consensus 95 ~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 95 LALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp SSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred CcCCHHHHHHHHHHHHHhCCEEEE
Confidence 466889999999999999887765
No 471
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=26.75 E-value=1.4e+02 Score=19.90 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=23.3
Q ss_pred EEEEeecChHHHHHHHHHHHHHHHHHhh
Q 042445 217 LRITFAVEPSALENGLGRMKAFYDRHAE 244 (246)
Q Consensus 217 iRls~~~~~~~l~~~~~~l~~~~~~~~~ 244 (246)
-++.|..+.++|..++..|+++.+..++
T Consensus 65 ~~i~f~c~~e~L~~Li~~Lk~A~~~~e~ 92 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKLKDAAKNIER 92 (95)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHHHHH
Confidence 3677788999999999999999877654
No 472
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=26.23 E-value=2.1e+02 Score=21.30 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=22.9
Q ss_pred CCChhhHHHHHHHHHHcCCEEEEccccC
Q 042445 23 GFSGSFVSPIAETAKKLGIMVIANEVYG 50 (246)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~ii~De~y~ 50 (246)
..++|.++.++++.++.|+.++.=..+.
T Consensus 46 ~~dee~~E~~vKi~ekfnipivaTa~~~ 73 (170)
T COG1880 46 ALDEELLELAVKIIEKFNIPIVATASSM 73 (170)
T ss_pred ccCHHHHHHHHHHHHhcCCceEecchhh
Confidence 4468888999999999999999876554
No 473
>PF12427 DUF3665: Branched-chain amino acid aminotransferase ; InterPro: IPR024614 This uncharacterised domain is found in the N-terminal region of branched-chain amino acid aminotransferase II proteins in Corynebacterium. It is typically between 23 and 35 amino acids in length and contains a conserved TRT sequence motif.
Probab=26.07 E-value=50 Score=15.47 Aligned_cols=14 Identities=14% Similarity=-0.099 Sum_probs=8.8
Q ss_pred CcCCCccCCChhhHHHHH
Q 042445 16 QVFHVGSGFSGSFVSPIA 33 (246)
Q Consensus 16 p~NPtG~~~~~~~~~~l~ 33 (246)
-+||| +.+++++|+
T Consensus 9 T~nPT----s~~~L~eIL 22 (23)
T PF12427_consen 9 TENPT----SPERLKEIL 22 (23)
T ss_pred cCCCC----CHHHHHHHh
Confidence 35776 556777765
No 474
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=25.61 E-value=1.4e+02 Score=17.01 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHH
Q 042445 190 DMEFALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAF 238 (246)
Q Consensus 190 ~~~~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~ 238 (246)
....+..++.+.++.+..-. | ...+.+.+..+.++.+...+.|.+.
T Consensus 7 ~~~~v~~~l~~~~~~i~~~~-y--~~~V~~~v~v~~~~~~~f~~~l~~~ 52 (56)
T PF09186_consen 7 QYGKVERLLEQNGIEIVDED-Y--TDDVTLTVAVPEEEVEEFKAQLTDL 52 (56)
T ss_dssp CHHHHHHHHHHTTTEEEEEE-E--CTTEEEEEEEECCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEcce-e--cceEEEEEEECHHHHHHHHHHHHHH
Confidence 45667888999999887633 2 3448888887666666666666543
No 475
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=1.8e+02 Score=23.25 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=45.9
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCC---cccEEEEcccccccccCCc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGS---IVPLLTLGSISKRGIVPGL 86 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~---~~~~i~~~s~sK~~~~~g~ 86 (246)
+-|+|+.|-|..-+ +-.+++.+-+.++|.-|+-..+-. +.+.+.+|.....-.+ +.-++..+...|.+.+||-
T Consensus 57 veNfPGFPdgi~G~-~l~d~mrkqs~r~Gt~i~tEtVsk-v~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ 132 (322)
T KOG0404|consen 57 VENFPGFPDGITGP-ELMDKMRKQSERFGTEIITETVSK-VDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGE 132 (322)
T ss_pred cccCCCCCcccccH-HHHHHHHHHHHhhcceeeeeehhh-ccccCCCeEEEecCCceeeeeEEEecccceeeeecCCC
Confidence 78999999998644 667888888888999888765433 3334444432221111 1224455666787777774
No 476
>PRK12354 carbamate kinase; Reviewed
Probab=25.22 E-value=1e+02 Score=25.64 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=26.2
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEcc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANE 47 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De 47 (246)
-..+|.-|.|-+|++++.+++. ++++..+..|.
T Consensus 115 Af~~ptKpiG~~y~~~~a~~~~---~e~g~~~~~dg 147 (307)
T PRK12354 115 AFANPTKPIGPVYDEAEAERLA---AEKGWTIKPDG 147 (307)
T ss_pred ccCCCCCCcCcccCHHHHHHHH---HhcCCEEeecC
Confidence 4457777889999999888866 77788888884
No 477
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=25.22 E-value=1.1e+02 Score=15.79 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 042445 137 EFFSKIIDILRETADKCCDRLKEI 160 (246)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~~L~~~ 160 (246)
.-+....+.++++++.+...|+.+
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeql 27 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777653
No 478
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=25.17 E-value=1.8e+02 Score=29.52 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=27.6
Q ss_pred ChhhHHHHHHHHHHcCCEEEEccccCCcccC
Q 042445 25 SGSFVSPIAETAKKLGIMVIANEVYGHLAFG 55 (246)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~ 55 (246)
+.++++++++.|+++|+-||.|-+|.+...+
T Consensus 245 ~~~efk~lV~~~H~~GI~VILDvV~NHt~~~ 275 (1221)
T PRK14510 245 GEEEFAQAIKEAQSAGIAVILDVVFNHTGES 275 (1221)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEEccccccCC
Confidence 6789999999999999999999999876544
No 479
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=24.95 E-value=1.1e+02 Score=25.60 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=25.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIAN 46 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~D 46 (246)
-..||.=|.|-+|++++.+++. ++++-.++.|
T Consensus 124 af~~PtKpiG~~y~~~~a~~~~---~~~g~~~~~d 155 (313)
T PRK12454 124 AFQNPTKPVGPFYDEEEAKKLA---KEKGWIVKED 155 (313)
T ss_pred cccCCCCCcCCCcCHHHHHHHH---HHcCCEEEEc
Confidence 4568888999999998888876 6667777777
No 480
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=24.89 E-value=79 Score=25.91 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=37.1
Q ss_pred cccCCcC--CCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC
Q 042445 12 FSDFQVF--HVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG 55 (246)
Q Consensus 12 ~~~~p~N--PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~ 55 (246)
+.|+|+. .||.+++.+++.++++-..+.+...-+|-+++++.-.
T Consensus 39 fSnHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs 84 (281)
T COG2240 39 FSNHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGS 84 (281)
T ss_pred ecCCCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCEEEEccCCC
Confidence 6666655 6899999999999999999889999999999976633
No 481
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=24.84 E-value=82 Score=26.75 Aligned_cols=30 Identities=20% Similarity=-0.033 Sum_probs=22.6
Q ss_pred cCCcCCCccCCC-hhhHHHHHHHHHHcCCEEEEcc
Q 042445 14 DFQVFHVGSGFS-GSFVSPIAETAKKLGIMVIANE 47 (246)
Q Consensus 14 ~~p~NPtG~~~~-~~~~~~l~~~~~~~~~~ii~De 47 (246)
-||+| +-+ ++.++++++.|+++|+.|=+--
T Consensus 107 INPGN----ig~~~~~v~~vv~~ak~~~ipIRIGv 137 (360)
T PRK00366 107 INPGN----IGKRDERVREVVEAAKDYGIPIRIGV 137 (360)
T ss_pred ECCCC----CCchHHHHHHHHHHHHHCCCCEEEec
Confidence 45644 455 7899999999999998876543
No 482
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=24.82 E-value=2.5e+02 Score=22.68 Aligned_cols=36 Identities=8% Similarity=0.150 Sum_probs=26.2
Q ss_pred CccCCChhhHHHHHHHHHHcCC----EEEEccccCCcccC
Q 042445 20 VGSGFSGSFVSPIAETAKKLGI----MVIANEVYGHLAFG 55 (246)
Q Consensus 20 tG~~~~~~~~~~l~~~~~~~~~----~ii~De~y~~~~~~ 55 (246)
.+..++..++.+.++...+.+. ++++|-+|++..++
T Consensus 126 ~~~~l~~~~L~~~L~~m~~~~~y~~lv~~veaC~SGs~~~ 165 (256)
T PF01650_consen 126 DGEELTADDLADALDKMHEKKRYKKLVFVVEACYSGSFFE 165 (256)
T ss_pred CcccccHHHHHHHHHHHHhhCCcceEEEEEecccccchhh
Confidence 4456677788887776665544 99999999976654
No 483
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=24.79 E-value=91 Score=25.32 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=25.6
Q ss_pred CCCccCCChhhHHHHHHHHHHcC-CEEEEcc
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLG-IMVIANE 47 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~-~~ii~De 47 (246)
-=||...+.+-++.+.+..++|+ ..+|+|=
T Consensus 76 vKtGML~~~eiie~va~~l~~~~~~~vV~DP 106 (263)
T COG0351 76 VKTGMLGSAEIIEVVAEKLKKYGIGPVVLDP 106 (263)
T ss_pred EEECCcCCHHHHHHHHHHHHhcCCCcEEECc
Confidence 46899999999999999999998 6677773
No 484
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=24.62 E-value=71 Score=27.10 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=24.4
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEcc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANE 47 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De 47 (246)
+...|+.|.|.+++.+++.++.+.++++|+.+-+=|
T Consensus 30 V~al~~~p~g~~W~~e~i~~~k~~ie~~GL~~~vIE 65 (351)
T PF03786_consen 30 VTALHDIPNGEVWDYEEIRALKERIEAAGLTLSVIE 65 (351)
T ss_dssp EE--SSS-TTS---HHHHHHHHHHHHCTT-EEEEEE
T ss_pred eeCCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 555677899999999999999999999997665544
No 485
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=24.30 E-value=1.1e+02 Score=20.97 Aligned_cols=35 Identities=9% Similarity=-0.021 Sum_probs=22.0
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEcc
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANE 47 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De 47 (246)
++|.| +|.-..-...+-..|.+.|.++|+.++.+-
T Consensus 72 VIn~~-~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~~ 106 (112)
T cd00532 72 VINLR-DPRRDRCTDEDGTALLRLARLYKIPVTTPN 106 (112)
T ss_pred EEEcC-CCCcccccCCChHHHHHHHHHcCCCEEECH
Confidence 56655 232211124557788888899999888763
No 486
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=24.01 E-value=1.4e+02 Score=29.00 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHcCCEEEEccccCCcccCC
Q 042445 27 SFVSPIAETAKKLGIMVIANEVYGHLAFGN 56 (246)
Q Consensus 27 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~ 56 (246)
.+++++++.|+++|+-||.|-+|.+....+
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g 433 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDVVYNHTNASG 433 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccccccC
Confidence 589999999999999999999999776543
No 487
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=23.80 E-value=90 Score=24.97 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCccCCChhhHHHHHHHHHHcCC-EEEEcccc
Q 042445 19 HVGSGFSGSFVSPIAETAKKLGI-MVIANEVY 49 (246)
Q Consensus 19 PtG~~~~~~~~~~l~~~~~~~~~-~ii~De~y 49 (246)
-+|.+.+.+.++.+.+++++++. .+++|=+.
T Consensus 78 ~iG~l~~~~~~~~i~~~~~~~~~~~vv~DPv~ 109 (266)
T PRK06427 78 KIGMLASAEIIETVAEALKRYPIPPVVLDPVM 109 (266)
T ss_pred EECCcCCHHHHHHHHHHHHhCCCCCEEEcCcc
Confidence 46667777778888888887764 67777543
No 488
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=23.53 E-value=87 Score=27.56 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=28.1
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG 50 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~ 50 (246)
--+|.+.+.+.+..+++.++++++.+++|=++.
T Consensus 75 ik~G~l~~~e~~~~i~~~~k~~g~~vv~DPv~~ 107 (448)
T PRK08573 75 AKTGMLSNREIIEAVAKTVSKYGFPLVVDPVMI 107 (448)
T ss_pred EEECCcCCHHHHHHHHHHHHHcCCCEEEcCccc
Confidence 358888888999999999999999999996543
No 489
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=23.42 E-value=3.1e+02 Score=25.88 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=30.7
Q ss_pred cccCCcCCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC
Q 042445 12 FSDFQVFHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG 55 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~ 55 (246)
+.++|. |.+.+ .|++.+++.+++.|+-||.|-+|.+...+
T Consensus 254 Yss~p~-p~~~i---~EfK~mV~~lHkaGI~VILDVVfNHTae~ 293 (697)
T COG1523 254 YASNPE-PATRI---KEFKDMVKALHKAGIEVILDVVFNHTAEG 293 (697)
T ss_pred ccCCCC-cchHH---HHHHHHHHHHHHcCCEEEEEEeccCcccc
Confidence 555663 54443 47899999999999999999999976643
No 490
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=23.32 E-value=2.4e+02 Score=18.98 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=28.8
Q ss_pred HHHHHHhcCeEEecCCCcCCCCeEEEEee-c------ChHH-HHHHHHHHHHHHHHHh
Q 042445 194 ALKLAKEESVIVLPGITVGLKDWLRITFA-V------EPSA-LENGLGRMKAFYDRHA 243 (246)
Q Consensus 194 ~~~ll~~~gi~v~pg~~f~~~~~iRls~~-~------~~~~-l~~~~~~l~~~~~~~~ 243 (246)
..+.|.++||.+.|..... .+.+..+.. . ++++ .....+.|.+.+.+..
T Consensus 40 a~~~L~~rGi~~~PD~~~N-aGGvi~s~~E~~~~~~~~~e~v~~~~~~~i~~~~~~v~ 96 (102)
T smart00839 40 ADDILEDRGVLYAPDFAAN-AGGVIVSALEMLQNLARTAEEVFTDLSEIMRNALEEIF 96 (102)
T ss_pred HHHHHHHCCCEEcCcceec-CCCEEeehhhhhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999965443 344434322 1 3333 3355566666665543
No 491
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.93 E-value=90 Score=26.07 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=22.8
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYG 50 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~ 50 (246)
--+|..++ +++++.+|++.+++++.|-.|-
T Consensus 193 End~k~~s---l~evL~lc~e~~iP~v~D~hHh 222 (312)
T TIGR00629 193 ENDDVTWT---VEDLLPVCEELNIPFVLDFHHH 222 (312)
T ss_pred ccCCCcCC---HHHHHHHHHhcCCCEEEEhHHh
Confidence 34556666 7888889999999999995443
No 492
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.81 E-value=1.1e+02 Score=24.30 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=20.1
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEc
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIAN 46 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~D 46 (246)
|+.|..+. .+++.+++++|++.+|.=
T Consensus 182 ~~dG~ma~---~~~l~~fA~~~~l~iisi 207 (230)
T PRK00014 182 NADGTMMR---GASLERYAAKEGLVALAI 207 (230)
T ss_pred CCCCCccC---HHHHHHHHHHcCCcEEEH
Confidence 66677766 777888889999888753
No 493
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.59 E-value=4.2e+02 Score=21.42 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=15.1
Q ss_pred CChhhHHHHHHHHHHcCCEEE
Q 042445 24 FSGSFVSPIAETAKKLGIMVI 44 (246)
Q Consensus 24 ~~~~~~~~l~~~~~~~~~~ii 44 (246)
++.++.+++.+.|+++|+-.|
T Consensus 126 Lp~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 126 LPPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred CCHHHHHHHHHHHHHcCCcEE
Confidence 455777788888888876655
No 494
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.04 E-value=3.9e+02 Score=21.80 Aligned_cols=25 Identities=12% Similarity=-0.009 Sum_probs=18.4
Q ss_pred cCCCccCCChhhHHHHHHHHHHcCCEEEE
Q 042445 17 VFHVGSGFSGSFVSPIAETAKKLGIMVIA 45 (246)
Q Consensus 17 ~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 45 (246)
.+|-..-++++++++|.+ -+++|..
T Consensus 35 ~dpH~ye~~p~d~~~l~~----Adliv~~ 59 (286)
T cd01019 35 ASPHDYELRPSDARKLQE----ADLVVWI 59 (286)
T ss_pred CCccCCCCCHHHHHHHHh----CCEEEEe
Confidence 378888999888888874 4555554
No 495
>PRK09213 pur operon repressor; Provisional
Probab=22.03 E-value=4.3e+02 Score=21.63 Aligned_cols=49 Identities=6% Similarity=0.103 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHhcCe---EEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHHHH
Q 042445 189 SDMEFALKLAKEESV---IVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFYDR 241 (246)
Q Consensus 189 ~~~~~~~~ll~~~gi---~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~~~ 241 (246)
+|...+.+.+++.|+ ...||. .|++|+-...++++-++.++.|.+.+.+
T Consensus 42 ed~~i~~~~~~~~~~g~~~t~~ga----~ggv~~~p~~~~~~a~~~~~~L~~~L~~ 93 (271)
T PRK09213 42 EDLVIIKETFEKQGIGTLETVPGA----AGGVKYIPSISEEEAREFVEELCERLSE 93 (271)
T ss_pred hhHHHHHHHHHhcCCceEEEeCCC----CCCeEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 456667777777764 334544 7888888888877777777777766643
No 496
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=21.91 E-value=95 Score=22.59 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=27.0
Q ss_pred CCCccCCChhhHHHHHHHHHHcCCEEEEccccCCcccC
Q 042445 18 FHVGSGFSGSFVSPIAETAKKLGIMVIANEVYGHLAFG 55 (246)
Q Consensus 18 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~ 55 (246)
.|......+.+++.|+++|.-||+++-...+=+++...
T Consensus 82 DPl~~~phepDi~aLlRlc~v~nIP~AtN~aTA~~li~ 119 (143)
T TIGR00160 82 DPLNAQPHEPDVKALLRLCTVWNIPLATNVATADFLIK 119 (143)
T ss_pred CCCCCCCCCcCHHHHHHHHHhhCcccccCHHHHHHHHh
Confidence 34434555667999999999999998877765544433
No 497
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.58 E-value=2e+02 Score=17.25 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=30.9
Q ss_pred HHHHHHHhcCeEEecCCCcCCCCeEEEEeecChHHHHHHHHHHHHHH
Q 042445 193 FALKLAKEESVIVLPGITVGLKDWLRITFAVEPSALENGLGRMKAFY 239 (246)
Q Consensus 193 ~~~~ll~~~gi~v~pg~~f~~~~~iRls~~~~~~~l~~~~~~l~~~~ 239 (246)
.+...|.+.||.+.--. ....-..+++..++++.++++..|.+.+
T Consensus 19 ~i~~aL~~~~I~v~~i~--~g~s~~sis~~v~~~~~~~av~~Lh~~f 63 (65)
T cd04918 19 RAFHVLYTKGVNVQMIS--QGASKVNISLIVNDSEAEGCVQALHKSF 63 (65)
T ss_pred HHHHHHHHCCCCEEEEE--ecCccceEEEEEeHHHHHHHHHHHHHHH
Confidence 44556788888773211 0134567888889999999999887765
No 498
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=21.55 E-value=53 Score=27.59 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHcCCEEEEccccCCcccCCCCCccccccCCcccEEEEcccccccccCCceEEEEEeeCCCCCcchhhHH
Q 042445 27 SFVSPIAETAKKLGIMVIANEVYGHLAFGNTPFVSMGVFGSIVPLLTLGSISKRGIVPGLRLGWLVTSDPNGILQDSGIV 106 (246)
Q Consensus 27 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g~r~G~i~~~~~~~~~~~~~~~ 106 (246)
+.+.+|++.|++.|+.+++|-.=+ .+..++-.. -.+..| +.+|..|+|+-+-.+.. ++.
T Consensus 49 ~~~~ell~~Anklg~~vivDvnPs----------il~~l~~S~--~~l~~f-~e~G~~glRlD~gfS~e--------ei~ 107 (360)
T COG3589 49 HRFKELLKEANKLGLRVIVDVNPS----------ILKELNISL--DNLSRF-QELGVDGLRLDYGFSGE--------EIA 107 (360)
T ss_pred HHHHHHHHHHHhcCcEEEEEcCHH----------HHhhcCCCh--HHHHHH-HHhhhhheeecccCCHH--------HHH
Confidence 457889999999999999995322 111221110 013333 44499999999888775 555
Q ss_pred HHHHHHhhhcCCCCchHHHHHHHHHh
Q 042445 107 DSIKIFLNISSDPATFIQGAVPQILE 132 (246)
Q Consensus 107 ~~l~~~~~~~~~~~~~~q~~~~~~l~ 132 (246)
.-.++-.....++|.+.+ -+..++.
T Consensus 108 ~ms~~~lkieLN~S~it~-~l~~l~~ 132 (360)
T COG3589 108 EMSKNPLKIELNASTITE-LLDSLLA 132 (360)
T ss_pred HHhcCCeEEEEchhhhHH-HHHHHHH
Confidence 444442334457788888 4455554
No 499
>PRK04358 hypothetical protein; Provisional
Probab=21.53 E-value=1.2e+02 Score=23.76 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=20.8
Q ss_pred CccCCChhhHHHHHHHHHHcCCEEEEcc
Q 042445 20 VGSGFSGSFVSPIAETAKKLGIMVIANE 47 (246)
Q Consensus 20 tG~~~~~~~~~~l~~~~~~~~~~ii~De 47 (246)
+|..-|.++++-| .+|.+.++.+|.||
T Consensus 156 ~G~ldS~~Didvl-aLA~ELda~lvTdD 182 (217)
T PRK04358 156 KGILDSAEDLDVL-LLAKELDAAVVSAD 182 (217)
T ss_pred cCcccchhhHHHH-HHHHHhCCEEEeCC
Confidence 5677777777654 48888899999998
No 500
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat. It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.
Probab=21.52 E-value=1e+02 Score=23.66 Aligned_cols=28 Identities=11% Similarity=-0.123 Sum_probs=18.2
Q ss_pred cccCCcCCCccCCChhh--HHHHHHHHHHc
Q 042445 12 FSDFQVFHVGSGFSGSF--VSPIAETAKKL 39 (246)
Q Consensus 12 ~~~~p~NPtG~~~~~~~--~~~l~~~~~~~ 39 (246)
++-.|-|||+.+..... ++.+.+-|+..
T Consensus 139 vILDPAdPtnNV~~~~~~~W~~la~eA~~w 168 (190)
T PF10421_consen 139 VILDPADPTNNVAGGNRWCWDLLAQEAAEW 168 (190)
T ss_dssp EEB-TT-TT-BTT-S-HHHHHHHHHHHHHH
T ss_pred ceeCCCCCCCccccCCccchHHHHHHHHHH
Confidence 77799999999988876 88888777653
Done!