Query 042446
Match_columns 445
No_of_seqs 248 out of 3915
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 06:15:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.3E-50 5.1E-55 426.4 33.5 428 11-444 23-469 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.3E-43 4.9E-48 373.3 27.1 384 59-445 188-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 7.3E-37 1.6E-41 279.4 10.2 350 84-442 79-431 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.2E-36 4.7E-41 276.3 5.7 385 41-435 46-447 (873)
5 KOG0444 Cytoskeletal regulator 100.0 1.1E-35 2.5E-40 273.9 -5.6 369 59-444 7-379 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 7.8E-34 1.7E-38 261.8 -5.7 345 80-441 4-353 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 1.7E-34 3.7E-39 252.9 -11.8 366 59-440 68-541 (565)
8 PLN03210 Resistant to P. syrin 99.9 1.9E-25 4.2E-30 237.3 27.6 359 59-440 532-906 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 1.1E-30 2.3E-35 229.1 -11.9 374 59-444 45-522 (565)
10 KOG0618 Serine/threonine phosp 99.9 6.8E-28 1.5E-32 232.0 -2.0 355 60-438 46-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 3.4E-23 7.5E-28 220.2 25.7 333 59-414 558-904 (1153)
12 KOG0618 Serine/threonine phosp 99.9 2E-25 4.4E-30 215.1 -1.4 365 60-442 22-467 (1081)
13 KOG4237 Extracellular matrix p 99.9 1.8E-24 3.8E-29 189.9 -4.4 132 59-190 67-199 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 2.3E-20 5E-25 185.3 17.2 265 107-423 201-465 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 3.3E-20 7.2E-25 184.1 17.8 261 86-398 204-464 (788)
16 KOG4237 Extracellular matrix p 99.8 6.6E-23 1.4E-27 180.1 -5.2 251 84-340 68-356 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.3E-18 2.8E-23 173.9 17.9 247 107-392 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.2E-18 4.7E-23 172.3 13.2 247 131-416 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.8E-20 6E-25 172.8 -0.8 282 136-439 3-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 2.4E-20 5.3E-25 173.1 -1.2 281 111-415 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 4.9E-19 1.1E-23 138.5 -6.1 161 59-225 33-194 (264)
22 KOG0617 Ras suppressor protein 99.7 1.8E-18 3.9E-23 135.3 -4.9 158 78-240 28-186 (264)
23 PLN03150 hypothetical protein; 99.4 2.1E-12 4.6E-17 129.0 13.7 150 14-167 369-527 (623)
24 KOG1909 Ran GTPase-activating 99.3 1.1E-13 2.4E-18 120.8 -1.5 239 174-415 25-310 (382)
25 KOG1909 Ran GTPase-activating 99.3 2.2E-13 4.9E-18 118.9 -0.4 238 199-439 26-310 (382)
26 KOG1259 Nischarin, modulator o 99.2 3.1E-12 6.6E-17 109.7 1.7 138 292-442 276-414 (490)
27 KOG3207 Beta-tubulin folding c 99.2 3.3E-12 7.1E-17 114.9 -0.6 189 129-342 119-313 (505)
28 COG4886 Leucine-rich repeat (L 99.2 8.3E-11 1.8E-15 112.4 8.9 176 252-442 116-292 (394)
29 KOG4658 Apoptotic ATPase [Sign 99.2 3.5E-11 7.5E-16 123.0 5.8 84 127-211 567-650 (889)
30 COG4886 Leucine-rich repeat (L 99.2 1.2E-10 2.5E-15 111.4 9.2 155 180-348 141-295 (394)
31 KOG3207 Beta-tubulin folding c 99.1 7.6E-12 1.6E-16 112.6 -0.4 135 299-440 196-339 (505)
32 KOG1259 Nischarin, modulator o 99.1 3.1E-11 6.7E-16 103.6 1.1 130 274-416 282-412 (490)
33 KOG0532 Leucine-rich repeat (L 99.1 4.6E-12 9.9E-17 117.6 -4.5 194 227-438 75-271 (722)
34 KOG4658 Apoptotic ATPase [Sign 99.1 7.5E-11 1.6E-15 120.6 3.4 254 105-368 521-783 (889)
35 PF14580 LRR_9: Leucine-rich r 99.0 7E-10 1.5E-14 91.0 6.8 105 277-392 20-126 (175)
36 KOG0532 Leucine-rich repeat (L 99.0 7.7E-12 1.7E-16 116.1 -5.5 167 64-239 80-246 (722)
37 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.5E-15 93.6 3.2 125 80-210 16-147 (175)
38 PLN03150 hypothetical protein; 99.0 1.1E-09 2.5E-14 109.6 8.4 110 331-441 419-529 (623)
39 PF13855 LRR_8: Leucine rich r 98.9 1.9E-09 4.2E-14 72.6 3.5 61 379-439 1-61 (61)
40 KOG2120 SCF ubiquitin ligase, 98.8 5.2E-11 1.1E-15 102.1 -6.4 87 228-314 186-274 (419)
41 KOG0531 Protein phosphatase 1, 98.8 1E-09 2.3E-14 105.0 -0.6 222 201-441 93-319 (414)
42 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.3E-13 68.9 3.7 60 356-415 2-61 (61)
43 KOG0531 Protein phosphatase 1, 98.7 2.2E-09 4.7E-14 102.8 -1.4 248 80-344 69-319 (414)
44 KOG2120 SCF ubiquitin ligase, 98.7 2.1E-10 4.6E-15 98.4 -7.6 183 252-438 185-374 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.6 2.8E-09 6.1E-14 90.5 -1.5 139 299-440 156-316 (388)
46 KOG2982 Uncharacterized conser 98.6 8.8E-09 1.9E-13 88.7 -0.6 232 76-308 38-287 (418)
47 KOG2982 Uncharacterized conser 98.4 7.9E-08 1.7E-12 82.9 0.4 203 226-433 70-285 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.3 4.6E-08 9.9E-13 83.3 -2.5 86 59-144 30-133 (388)
49 KOG4341 F-box protein containi 98.3 9.6E-09 2.1E-13 92.5 -7.2 35 132-166 139-175 (483)
50 KOG1859 Leucine-rich repeat pr 98.2 1E-08 2.2E-13 98.5 -9.0 179 100-288 102-291 (1096)
51 KOG1859 Leucine-rich repeat pr 98.2 5.5E-08 1.2E-12 93.6 -4.8 126 278-416 166-292 (1096)
52 PF08263 LRRNT_2: Leucine rich 98.2 2.1E-06 4.5E-11 52.8 3.4 40 16-55 2-43 (43)
53 KOG4341 F-box protein containi 98.1 3.4E-08 7.5E-13 89.0 -8.2 281 155-439 138-438 (483)
54 PF12799 LRR_4: Leucine Rich r 98.1 3.3E-06 7.1E-11 52.0 2.7 37 404-441 2-38 (44)
55 KOG4579 Leucine-rich repeat (L 98.0 2.1E-07 4.5E-12 71.0 -3.6 105 278-392 29-136 (177)
56 KOG3665 ZYG-1-like serine/thre 98.0 7.3E-07 1.6E-11 89.4 -1.2 110 250-361 171-281 (699)
57 PRK15386 type III secretion pr 98.0 3.2E-05 6.9E-10 71.8 8.6 138 223-390 48-188 (426)
58 KOG1644 U2-associated snRNP A' 97.9 2.3E-05 5E-10 64.2 6.2 105 106-212 41-149 (233)
59 PRK15386 type III secretion pr 97.8 7.1E-05 1.5E-09 69.5 8.5 139 199-366 48-188 (426)
60 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.8E-10 48.3 2.8 36 380-416 2-37 (44)
61 KOG4579 Leucine-rich repeat (L 97.8 2E-06 4.4E-11 65.7 -2.4 84 59-144 53-136 (177)
62 KOG3665 ZYG-1-like serine/thre 97.7 1.3E-05 2.8E-10 80.6 1.3 199 225-433 58-281 (699)
63 KOG1644 U2-associated snRNP A' 97.6 0.0001 2.2E-09 60.5 5.2 124 303-436 22-149 (233)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00077 1.7E-08 53.1 7.5 14 127-140 31-44 (129)
65 PF13306 LRR_5: Leucine rich r 97.3 0.00072 1.6E-08 53.2 6.5 106 78-188 7-112 (129)
66 KOG1947 Leucine rich repeat pr 97.2 4.1E-05 8.9E-10 75.4 -1.6 65 375-439 358-439 (482)
67 KOG1947 Leucine rich repeat pr 97.1 3.8E-05 8.3E-10 75.6 -3.3 61 356-416 363-440 (482)
68 KOG2123 Uncharacterized conser 97.0 3.9E-05 8.4E-10 66.1 -4.0 99 329-433 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.9 0.00048 1E-08 59.1 1.9 65 274-343 63-129 (260)
70 KOG2123 Uncharacterized conser 96.8 7.4E-05 1.6E-09 64.4 -3.4 99 299-409 18-123 (388)
71 KOG2739 Leucine-rich acidic nu 96.4 0.0014 3E-08 56.4 1.5 106 326-434 39-150 (260)
72 KOG3864 Uncharacterized conser 95.3 0.0021 4.6E-08 53.0 -1.9 81 356-436 102-185 (221)
73 PF00560 LRR_1: Leucine Rich R 94.9 0.013 2.8E-07 29.8 1.0 18 405-423 2-19 (22)
74 KOG4308 LRR-containing protein 94.9 0.00015 3.2E-09 69.9 -11.5 189 228-418 88-305 (478)
75 PF00560 LRR_1: Leucine Rich R 94.2 0.024 5.2E-07 28.8 0.9 12 357-368 2-13 (22)
76 KOG4308 LRR-containing protein 93.8 0.00028 6.1E-09 68.1 -12.1 209 204-414 88-329 (478)
77 PF13504 LRR_7: Leucine rich r 92.9 0.07 1.5E-06 25.1 1.3 12 428-439 2-13 (17)
78 PF13516 LRR_6: Leucine Rich r 91.1 0.046 1E-06 28.4 -0.6 17 403-419 2-18 (24)
79 KOG0473 Leucine-rich repeat pr 88.6 0.01 2.2E-07 50.3 -6.5 84 58-144 41-124 (326)
80 KOG3864 Uncharacterized conser 88.1 0.096 2.1E-06 43.6 -1.1 33 356-388 152-185 (221)
81 smart00370 LRR Leucine-rich re 84.5 0.84 1.8E-05 24.0 1.8 14 403-416 2-15 (26)
82 smart00369 LRR_TYP Leucine-ric 84.5 0.84 1.8E-05 24.0 1.8 14 403-416 2-15 (26)
83 KOG0473 Leucine-rich repeat pr 83.8 0.015 3.3E-07 49.2 -7.8 86 78-166 37-122 (326)
84 smart00364 LRR_BAC Leucine-ric 78.6 1.4 3.1E-05 23.3 1.3 14 428-441 3-16 (26)
85 smart00365 LRR_SD22 Leucine-ri 73.3 3.2 6.9E-05 22.0 1.8 14 403-416 2-15 (26)
86 smart00368 LRR_RI Leucine rich 73.0 1.6 3.5E-05 23.5 0.6 16 403-418 2-17 (28)
87 KOG3763 mRNA export factor TAP 70.9 2.3 4.9E-05 41.3 1.5 62 356-417 219-284 (585)
88 KOG3763 mRNA export factor TAP 63.8 2.5 5.4E-05 41.0 0.2 37 274-310 216-254 (585)
89 KOG1665 AFH1-interacting prote 63.7 9.1 0.0002 32.4 3.4 11 255-265 129-139 (302)
90 smart00367 LRR_CC Leucine-rich 57.4 7.3 0.00016 20.4 1.3 17 402-418 1-18 (26)
91 KOG4242 Predicted myosin-I-bin 54.3 73 0.0016 30.8 7.9 280 107-389 165-478 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-50 Score=426.42 Aligned_cols=428 Identities=34% Similarity=0.530 Sum_probs=291.8
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCCCCCCCCCCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEC
Q 042446 11 VAAFEEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINL 90 (445)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L 90 (445)
-++..+.+..++.++++.+. +|..+...|....++|.|.|+.|... .+|+.++++++.+.+.++..+..+++|++|++
T Consensus 23 ~~~~~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~L 100 (968)
T PLN00113 23 FSMLHAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100 (968)
T ss_pred ccCCCHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEEC
Confidence 34446678889999999985 78888899998889999999999864 68999999999999888889999999999999
Q ss_pred CCCcccccCCcccc-CCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCC
Q 042446 91 MDNTIQGEIPPEFG-RLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG 169 (445)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (445)
++|.+.+.+|..+. .+.+|++|++++|.+.+.+|. ..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+
T Consensus 101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence 99999888887654 788888888888888766654 346777777777777766667667777777777777777666
Q ss_pred CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCccccc
Q 042446 170 GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL 249 (445)
Q Consensus 170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 249 (445)
..|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 66666777777777777777766666666677777777777777666666666666677777777766666666655554
Q ss_pred CCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCC----------
Q 042446 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDE---------- 319 (445)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---------- 319 (445)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......
T Consensus 259 -l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 259 -LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred -CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 666666666666666556666666666666666666665555555666666666666666554411100
Q ss_pred --------CcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcc
Q 042446 320 --------MGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQF 391 (445)
Q Consensus 320 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 391 (445)
..++..+..+++|+.|++++|.+.+.+|..+.... +|+.|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 02233344444455555555554444444444433 455555555555545555555566666666666666
Q ss_pred eecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 392 IGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 392 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
.+..|..+..+++|+.|++++|.+.+.++..+..+++|+.|++++|++.+.+|
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 65666666666666666666666666666555666666777777776666655
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-43 Score=373.28 Aligned_cols=384 Identities=34% Similarity=0.505 Sum_probs=284.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.+++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 56788888888888778888888888888888888888778888888888888888888887778888888888888888
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+..|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc
Confidence 88887777777777788888888888877777777777777888888877777777777777777777777777777767
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
+|..+..+++|+.|++++|.+.+.+|..+.. .++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 7777777777777777777766655555543 455555555555555555555555555555555555555444444555
Q ss_pred CCCCCEEEccCCcCCCCCCCCC------------------cccccccCCCCCcEEEccCCcceecCChhhhhccccCcEE
Q 042446 299 MKNLSHLILQSSNLGSGESDEM------------------GFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVL 360 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 360 (445)
+++|+.|++++|.+........ .++. ....++|+.|++++|++.+.+|..+..++ +|++|
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L 504 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLS-ELMQL 504 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc-ccccccceEEECcCCccCCccChhhhhhh-ccCEE
Confidence 5555555555554433111000 1111 12346778888888888777777777766 88888
Q ss_pred EcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcce
Q 042446 361 FLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 361 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+.++++|+.+++++|++.
T Consensus 505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 88888888888888888888999999999888888888888899999999999988888888888889999999999998
Q ss_pred ecCCC
Q 042446 441 GVIPS 445 (445)
Q Consensus 441 ~~~p~ 445 (445)
|.+|+
T Consensus 585 ~~~p~ 589 (968)
T PLN00113 585 GSLPS 589 (968)
T ss_pred eeCCC
Confidence 88874
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-37 Score=279.41 Aligned_cols=350 Identities=20% Similarity=0.213 Sum_probs=268.6
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (445)
..+.|++++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|++.+|.+...-...+..++.|++|+++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3467888888888777777888888888888888887 778777777778888888888876666677788888888888
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 243 (445)
.|.+...--..+..-.++++|++++|.|+......|..+.+|.+|.+++|.++...+..|.++++|+.|++..|++. .+
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-iv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-ee
Confidence 88887655556666678888888888888766677888888888888888888555566667888888888888875 44
Q ss_pred CcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccc
Q 042446 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFI 323 (445)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 323 (445)
....++++++|+.|.+..|++.......|..+.++++|+|+.|++......++.+++.|+.|++++|.+..+...
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d----- 311 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID----- 311 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc-----
Confidence 344455688888888888887765566777788888888888888777777888888888888888888775544
Q ss_pred ccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecC---Chhhh
Q 042446 324 NSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTI---PQEMG 400 (445)
Q Consensus 324 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~ 400 (445)
++.-+++|++|+|+.|+++...+..+..+. .|++|.|+.|.++...-..+..+.+|+.|+|+.|.+...+ ...|.
T Consensus 312 -~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 312 -SWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred -hhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 556678888888888888866666666665 7888888888887444445677788888888888776332 34567
Q ss_pred CCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceec
Q 042446 401 KLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 401 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
.+++|+.|.+.+|+++..--.+|.+++.|+.|++.+|.|-+.
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 788888888888888833336788888888888888887664
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-36 Score=276.30 Aligned_cols=385 Identities=23% Similarity=0.226 Sum_probs=329.2
Q ss_pred CCCCCCcceeeeEeCCCC--------------CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCC
Q 042446 41 NDSRHFCEWDGVTCGRRH--------------RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRL 106 (445)
Q Consensus 41 ~~~~~~c~~~~~~~~~~~--------------~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 106 (445)
.+.+..|.-....|+... ..++.+++++|.++..-+..+.++++|+.+.+.+|.++ .+|......
T Consensus 46 cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s 124 (873)
T KOG4194|consen 46 CPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES 124 (873)
T ss_pred CCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccc
Confidence 344455666666666432 35678999999998877778899999999999999998 888877778
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEee
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 186 (445)
.+|+.|++.+|.|+..-...+..++.||+||++.|.++...-..|..-.++++|++++|.++..-...|..+.+|..|.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 88999999999999777788899999999999999998555567888889999999999999877788899999999999
Q ss_pred cccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc
Q 042446 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
+.|.++...+..|.++++|+.|++..|.+.-.-.-.|..+++|+.|.+..|.+. .+.+..+.++.++++|++..|.+..
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhh
Confidence 999999777778888999999999999998444667788999999999999998 5655556669999999999999987
Q ss_pred cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC
Q 042446 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346 (445)
Q Consensus 267 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 346 (445)
.-..++.+++.|+.|+++.|.|..+.+..+..+++|++|+++.|+++..... ++..+..|++|.|+.|++...-
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~------sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG------SFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh------HHHHHHHhhhhcccccchHHHH
Confidence 7778899999999999999999999999999999999999999999885543 6788899999999999997433
Q ss_pred ChhhhhccccCcEEEcccCccccc---CCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccc
Q 042446 347 PHSITNLSSQLQVLFLGFNQLYGS---IPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTL 423 (445)
Q Consensus 347 ~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 423 (445)
..++..+ ++|++|||+.|.+... ....+..+++|+.|.+.+|++...-..+|.++.+|+.|||.+|.|...-+.+|
T Consensus 358 e~af~~l-ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 358 EGAFVGL-SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hhHHHHh-hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 3334444 4999999999998642 23456779999999999999995555899999999999999999997889999
Q ss_pred cCCCCCCeEEcc
Q 042446 424 GNLSSLSEIVLS 435 (445)
Q Consensus 424 ~~l~~L~~l~l~ 435 (445)
..+ .|++|.+.
T Consensus 437 e~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 437 EPM-ELKELVMN 447 (873)
T ss_pred ccc-hhhhhhhc
Confidence 998 89888775
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=1.1e-35 Score=273.89 Aligned_cols=369 Identities=25% Similarity=0.381 Sum_probs=321.4
Q ss_pred CcEEEEEcCCCCCc-ccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEE
Q 042446 59 RRVIALDLMSKALS-GSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137 (445)
Q Consensus 59 ~~v~~l~l~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~ 137 (445)
+-|+.+|+++|.++ +.+|..+..++.++.|.|....+. .+|+.++.+.+|+.|.+.+|++. .+-..+..++.||.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 57889999999999 469999999999999999999997 89999999999999999999988 5666788899999999
Q ss_pred ccCCcCcc-cCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc
Q 042446 138 LGQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 138 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 216 (445)
+.+|.+.. -+|..+..+..|.+|++++|++. ..|..+...+++-.|++++|+|.......+.++..|-.|++++|.+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 99998763 36778889999999999999998 78888999999999999999999655556778999999999999998
Q ss_pred ccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCc-ccCcccCcCCCCCCEEECccCcCcccCccc
Q 042446 217 GKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT-GSIPVSLSNASKLEVIQIANNSFSGKFSVN 295 (445)
Q Consensus 217 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 295 (445)
.+|+.+..+.+|++|++++|++.-.....+. .+..|+.|.+++.+.+ ..+|.++..+.+|..++++.|.+. ..|..
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 8999999999999999999977522222222 2667888888887754 357889999999999999999987 67888
Q ss_pred ccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCccc-ccCCcc
Q 042446 296 FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLY-GSIPSG 374 (445)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~ 374 (445)
+..+++|+.|++++|+++.... ......+|++|+++.|+++ .+|.++..++ +|+.|...+|+++ +-+|++
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~-------~~~~W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNM-------TEGEWENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred HhhhhhhheeccCcCceeeeec-------cHHHHhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccc
Confidence 9999999999999999977432 3456678999999999998 8999999998 8999999999865 247999
Q ss_pred ccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 375 IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 375 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
++.+..|+.+...+|.+. ..|+.++.|..|+.|.|+.|++. .+|++++-++-|+.|+++.|+-..-+|
T Consensus 312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999887 89999999999999999999998 889999999999999999999776555
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=7.8e-34 Score=261.84 Aligned_cols=345 Identities=25% Similarity=0.374 Sum_probs=306.4
Q ss_pred cCCCCCCEEECCCCccc-ccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 80 GNLSFLREINLMDNTIQ-GEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
+-++.++..|+++|.+. +.+|.....+..++-|.+..+.+. .+|..++.+.+|++|.+++|++. .+-..+..++.||
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 44677899999999998 468999999999999999999998 89999999999999999999987 4555678899999
Q ss_pred EEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCc-cCcCCCCCcEEEccC
Q 042446 159 GLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPP-SICNLSFLVNFSVSQ 236 (445)
Q Consensus 159 ~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~ 236 (445)
.+.+.+|++.. -+|..+-++..|+.|++++|++. +.|..+...+++-.|++++|+|. .+|. .+.++..|-.|+++.
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence 99999998763 57777889999999999999999 78999999999999999999998 5664 456789999999999
Q ss_pred CcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcC-cccCcccccCCCCCCEEEccCCcCCCC
Q 042446 237 NQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF-SGKFSVNFGGMKNLSHLILQSSNLGSG 315 (445)
Q Consensus 237 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~ 315 (445)
|++. .+|..+.. +.+|++|.+++|.+.-.....+..++.|+.|.+++.+- ...+|..+..+.+|..++++.|.+..
T Consensus 160 NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~- 236 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI- 236 (1255)
T ss_pred chhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-
Confidence 9987 77777766 89999999999987755556677788899999999764 34678888999999999999998866
Q ss_pred CCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcce-ec
Q 042446 316 ESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI-GT 394 (445)
Q Consensus 316 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~ 394 (445)
+|..+-+.++|+.|++++|+++ ++......+. +|++|+++.|+++ .+|.+++.++.|+.|.+.+|++. .-
T Consensus 237 ------vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 237 ------VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred ------chHHHhhhhhhheeccCcCcee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 5668889999999999999998 6666677776 9999999999999 89999999999999999999887 46
Q ss_pred CChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 395 IPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 395 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
+|..++.+..|+.+..++|.+. .+|+.+++|++|+.|.++.|++.+
T Consensus 308 iPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 308 IPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred CccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee
Confidence 8999999999999999999999 999999999999999999999876
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.7e-34 Score=252.89 Aligned_cols=366 Identities=26% Similarity=0.394 Sum_probs=240.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.-++.++++++.++ .+|++++++..++.++.++|.+. ++|..+..+..|..++++.|.+. .+|..++.+..|+.++.
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 34567777777765 45566666666666666666665 55666666666666666666555 45555555555555555
Q ss_pred cCCcCcccCCccccC-----------------------CCCCCEEecccccCCCCCCccCCCCCCcceEeeccccccccc
Q 042446 139 GQNKLVGSIPFEFVF-----------------------LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~-----------------------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 195 (445)
.+|++. ..|..+.. ++.|+++++..|-+. .+|+.++.+.+|..|++..|.+. .+
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence 555554 33333333 444555555555444 45555666666666666666665 44
Q ss_pred CcccCCCCCCCEEEccCCCCcccCCccCc-CCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcC
Q 042446 196 PDSLGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSN 274 (445)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 274 (445)
| .|..+..|++|+++.|.+. .+|.... ++.++..||++.|++. ++|+.+.. +.+|.+|++++|.++ .+|..+++
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCccccc
Confidence 4 5666666666666666665 4444443 6777778888888776 77777665 777888888888777 46777777
Q ss_pred CCCCCEEECccCcCcccCcc-----------------------------------------cccCCCCCCEEEccCCcCC
Q 042446 275 ASKLEVIQIANNSFSGKFSV-----------------------------------------NFGGMKNLSHLILQSSNLG 313 (445)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~~~-----------------------------------------~l~~~~~L~~L~l~~~~~~ 313 (445)
+ +|+.|.+.||.+..+-.. ......+.+.|++++-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 7 888888888766311000 0001123344444444443
Q ss_pred CCCCCCC-------------------------------------------cccccccCCCCCcEEEccCCcceecCChhh
Q 042446 314 SGESDEM-------------------------------------------GFINSLANCSKLRVLSFGRNQFRGVLPHSI 350 (445)
Q Consensus 314 ~~~~~~~-------------------------------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 350 (445)
.++.+.| -++..+..+++|..|++++|-+. .+|..+
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~ 454 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEM 454 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhh
Confidence 3332221 11233556788888888887665 677777
Q ss_pred hhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCC
Q 042446 351 TNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLS 430 (445)
Q Consensus 351 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 430 (445)
+..- .|++|+++.|.|. ..|..+.....++.+-.++|++....+..+.++.+|..||+.+|++. .+|..+++|++|+
T Consensus 455 ~~lv-~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 455 GSLV-RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR 531 (565)
T ss_pred hhhh-hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence 7776 6888888888876 67777766677777777778887555566999999999999999999 8899999999999
Q ss_pred eEEccCCcce
Q 042446 431 EIVLSNNNLS 440 (445)
Q Consensus 431 ~l~l~~n~~~ 440 (445)
+|+++||+|.
T Consensus 532 hLeL~gNpfr 541 (565)
T KOG0472|consen 532 HLELDGNPFR 541 (565)
T ss_pred EEEecCCccC
Confidence 9999999997
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1.9e-25 Score=237.27 Aligned_cols=359 Identities=20% Similarity=0.210 Sum_probs=270.5
Q ss_pred CcEEEEEcCCCCCcc--cccccccCCCCCCEEECCCCcc------cccCCccccCC-CCCCEEECCCCcCCCCCCccCcC
Q 042446 59 RRVIALDLMSKALSG--SLSPHIGNLSFLREINLMDNTI------QGEIPPEFGRL-FRLEALFLANNSLVGKIPANLSY 129 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~--~~~~~l~~l~~L~~L~L~~~~~------~~~~~~~~~~~-~~L~~L~l~~~~i~~~~p~~l~~ 129 (445)
.+|+.+.+....+.. ..+.++.++++|+.|.+..+.. ...+|..+..+ .+|+.|.+.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 566666665444432 2344678899999999976532 23456666665 46999999999887 778777 4
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEE
Q 042446 130 CSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLA 209 (445)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 209 (445)
..+|++|++.++.+. .++..+..+++|+.|+++++.....+|. +..+++|+.|++.+|.....+|..++++++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 689999999999887 6777888999999999998765446664 78899999999999876668899999999999999
Q ss_pred ccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCc
Q 042446 210 IGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFS 289 (445)
Q Consensus 210 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (445)
+++|..-..+|..+ ++++|+.|++++|...+.+|.. .++|+.|+++++.+. .+|..+ .+++|++|.+.++...
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 99976555777665 7899999999999765555542 568999999999887 455544 5788888888764321
Q ss_pred c-------cCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEc
Q 042446 290 G-------KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362 (445)
Q Consensus 290 ~-------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 362 (445)
. ..+.....+++|++|++++|.... .++..+..+++|+.|++++|...+.+|..+ .+ ++|++|++
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~------~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L-~sL~~L~L 832 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV------ELPSSIQNLHKLEHLEIENCINLETLPTGI-NL-ESLESLDL 832 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCcc------ccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc-cccCEEEC
Confidence 1 111223345789999999886544 466678889999999999886555667655 33 48999999
Q ss_pred ccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcce
Q 042446 363 GFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
++|.....+|.. ..+|+.|++++|.+. .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.-.
T Consensus 833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 833 SGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 988644344432 367889999999887 78888889999999999997644467777788889999998888633
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=1.1e-30 Score=229.14 Aligned_cols=374 Identities=25% Similarity=0.384 Sum_probs=261.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..+..+++++|.+. .+.+.+..+..+.+|++.++.+. .+|.+++.+..++.++.++|++. .+|..++.++.|+.++.
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 35667889999886 45667888999999999999998 89999999999999999999998 89999999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+. ..|+.++.+..|..++..+|++. ..|..+.++.+|..+++.+|.+.. .|...-+++.|++++...|.++ .
T Consensus 122 s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-T 197 (565)
T ss_pred ccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-c
Confidence 999998 78889999999999999999988 556666666667677776666652 3333323555555555555444 4
Q ss_pred CCccCcCCCCCcEEEccCCcCC---------------------CCCCcccccCCCCccEEEccCCcCcccCcccCcCCCC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIH---------------------GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASK 277 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~---------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 277 (445)
+|+.++.+.+|+.|+++.|++. ..+|......++++..|++++|++. ..|..+..+++
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 5555555555544444444443 1555555556788888999999888 57888888888
Q ss_pred CCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCC-------------------------------C----cc
Q 042446 278 LEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDE-------------------------------M----GF 322 (445)
Q Consensus 278 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------------------------------~----~~ 322 (445)
|++||+++|.++ ..+..++++ +|+.|.+.||.+.++.... . ..
T Consensus 277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 999999999887 556678888 8999999888653211100 0 00
Q ss_pred cccccCCCCCcEEEccCCcceecCChhhhhccc--cCcEEEcccCccc-----------------------ccCCccccC
Q 042446 323 INSLANCSKLRVLSFGRNQFRGVLPHSITNLSS--QLQVLFLGFNQLY-----------------------GSIPSGIGN 377 (445)
Q Consensus 323 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~-----------------------~~~~~~~~~ 377 (445)
........+.+.|++++-+++ .+|+..+...+ -...++++.|++. +.+|..++.
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~ 433 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQ 433 (565)
T ss_pred ccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHh
Confidence 011122344566666665555 44544443220 1344445544442 134445566
Q ss_pred ccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc-----------------------ccccccccCCCCCCeEEc
Q 042446 378 LVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS-----------------------GKIPSTLGNLSSLSEIVL 434 (445)
Q Consensus 378 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-----------------------~~~~~~l~~l~~L~~l~l 434 (445)
+++|..|++++|-+. .+|..++.+-.|+.++++.|++. ...+..+.++.+|..|++
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 778888888777666 77777777777888888877655 222334667788899999
Q ss_pred cCCcceecCC
Q 042446 435 SNNNLSGVIP 444 (445)
Q Consensus 435 ~~n~~~~~~p 444 (445)
.+|.+..++|
T Consensus 513 ~nNdlq~IPp 522 (565)
T KOG0472|consen 513 QNNDLQQIPP 522 (565)
T ss_pred CCCchhhCCh
Confidence 9998887554
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=6.8e-28 Score=231.98 Aligned_cols=355 Identities=28% Similarity=0.360 Sum_probs=223.6
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEcc
Q 042446 60 RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLG 139 (445)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~ 139 (445)
++.+++++++.+. ..|..+..+.+|+.|+++.|.+. ..|.+.+.+.+|++++|.+|.+. .+|..+..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4889999999885 78888999999999999999998 78888999999999999999887 899999999999999999
Q ss_pred CCcCcccCCccccCCCC-------------------CCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccC
Q 042446 140 QNKLVGSIPFEFVFLYK-------------------LKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLG 200 (445)
Q Consensus 140 ~~~~~~~~~~~~~~l~~-------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 200 (445)
+|.+. ..|..+..+.. ++.+++..+.+.+.++..+..+.. .+++.+|.+... .+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls 196 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLS 196 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhh
Confidence 99887 55544444333 444555555555555555544444 588888876521 122
Q ss_pred CCCCCCEEEc--------------------cCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEcc
Q 042446 201 QLKELKSLAI--------------------GVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQID 260 (445)
Q Consensus 201 ~l~~L~~L~l--------------------~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (445)
++.+|+.+.. +.|.+.... .. ..-.+|+.++++.+++. .+|+++.. +++|+.+...
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~-p~p~nl~~~dis~n~l~-~lp~wi~~-~~nle~l~~n 272 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-VH-PVPLNLQYLDISHNNLS-NLPEWIGA-CANLEALNAN 272 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeec-cc-cccccceeeecchhhhh-cchHHHHh-cccceEeccc
Confidence 2223332222 222222000 00 01134555666666555 55544443 5666666666
Q ss_pred CCcCcc----------------------cCcccCcCCCCCCEEECccCcCcccCcccccC--------------------
Q 042446 261 QNFFTG----------------------SIPVSLSNASKLEVIQIANNSFSGKFSVNFGG-------------------- 298 (445)
Q Consensus 261 ~~~~~~----------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-------------------- 298 (445)
+|.++. .+|......+.|++|+|..|.+.......+.-
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 555531 23334444455555555555543221111110
Q ss_pred -----CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhh-hhccccCcEEEcccCcccccCC
Q 042446 299 -----MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSI-TNLSSQLQVLFLGFNQLYGSIP 372 (445)
Q Consensus 299 -----~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 372 (445)
++.|+.|.+.+|.+++ .....+.++++|+.|++++|++. .+|... ..+. .|++|++++|+++ .+|
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd------~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle-~LeeL~LSGNkL~-~Lp 423 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTD------SCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLE-ELEELNLSGNKLT-TLP 423 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccc------cchhhhccccceeeeeecccccc-cCCHHHHhchH-HhHHHhcccchhh-hhh
Confidence 1122333333344333 34455677777888888888776 455443 3344 7778888888877 667
Q ss_pred ccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCc
Q 042446 373 SGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNN 438 (445)
Q Consensus 373 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~ 438 (445)
..+..++.|+.|...+|.+. ..| .+..++.|+.+|++.|+++..........++|++|+++||.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77777777888877777776 666 56678888888888888764433222333788888888886
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3.4e-23 Score=220.17 Aligned_cols=333 Identities=18% Similarity=0.209 Sum_probs=255.5
Q ss_pred CcEEEEEcCCCC------CcccccccccCC-CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCC
Q 042446 59 RRVIALDLMSKA------LSGSLSPHIGNL-SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCS 131 (445)
Q Consensus 59 ~~v~~l~l~~~~------~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~ 131 (445)
++++.+.+..+. ....+|..+..+ .+|+.|.+.++.+. .+|..+ .+.+|+.|++.++.+. .++..+..++
T Consensus 558 ~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~ 634 (1153)
T PLN03210 558 RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLT 634 (1153)
T ss_pred ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCC
Confidence 445555554332 222355666665 45999999999887 777766 5789999999999988 6788888999
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEcc
Q 042446 132 RLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIG 211 (445)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 211 (445)
+|++|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 99999999876544666 47889999999999987666888889999999999999986555677655 78999999999
Q ss_pred CCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc-------cCcccCcCCCCCCEEECc
Q 042446 212 VNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG-------SIPVSLSNASKLEVIQIA 284 (445)
Q Consensus 212 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~~L~~L~l~ 284 (445)
+|.....+|.. ..+|+.|+++++.+. .+|..+ .+++|++|.+.++.... ..+......++|+.|+++
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence 98765455543 467899999999876 677655 37888888887643221 111222345789999999
Q ss_pred cCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEccc
Q 042446 285 NNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGF 364 (445)
Q Consensus 285 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 364 (445)
+|......|..+..+++|+.|++++|.... .++... .+++|+.|++++|.....+|.. +.+|++|++++
T Consensus 787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~------~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~ 855 (1153)
T PLN03210 787 DIPSLVELPSSIQNLHKLEHLEIENCINLE------TLPTGI-NLESLESLDLSGCSRLRTFPDI----STNISDLNLSR 855 (1153)
T ss_pred CCCCccccChhhhCCCCCCEEECCCCCCcC------eeCCCC-CccccCEEECCCCCcccccccc----ccccCEeECCC
Confidence 997766778889999999999999875433 233333 6889999999998655455432 34899999999
Q ss_pred CcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCc
Q 042446 365 NQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNH 414 (445)
Q Consensus 365 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 414 (445)
|.++ .+|..+..+++|+.|++++|+....+|..+..+++|+.+++++|.
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9998 688889999999999999987776788888889999999999986
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=2e-25 Score=215.08 Aligned_cols=365 Identities=26% Similarity=0.327 Sum_probs=256.6
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEcc
Q 042446 60 RVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLG 139 (445)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~ 139 (445)
.++.+++..|.+-....+.+.+.-+|++|++++|.+. .+|..+..+.+|+.|+++.|-|. .+|....++.+|+++.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 3666777776654332334445555999999999997 89999999999999999999998 788999999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccc-------------------ccccccCcccC
Q 042446 140 QNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYN-------------------SFEGNIPDSLG 200 (445)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-------------------~~~~~~~~~l~ 200 (445)
+|... ..|..+..+++|+.|+++.|.+. ..|..+..+..++.+..++| .+.+.++..+.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~ 177 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY 177 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh
Confidence 99887 88999999999999999999887 45554444444444444444 44444444444
Q ss_pred CCCCCCEEEccCCCCcccCCccCcCC--------------------CCCcEEEccCCcCCCCCCcccccCCCCccEEEcc
Q 042446 201 QLKELKSLAIGVNNLSGKIPPSICNL--------------------SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQID 260 (445)
Q Consensus 201 ~l~~L~~L~l~~n~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (445)
.+.. .+++.+|.+... .+..+ ++++.|....|.+....+. . .+.+|++++++
T Consensus 178 ~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-p--~p~nl~~~dis 249 (1081)
T KOG0618|consen 178 NLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-P--VPLNLQYLDIS 249 (1081)
T ss_pred hhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-c--ccccceeeecc
Confidence 4444 577877776511 22222 3344444444544411111 1 15578888888
Q ss_pred CCcCcccCcccCcCCCCCCEEECccCcCccc----------------------CcccccCCCCCCEEEccCCcCCCCCCC
Q 042446 261 QNFFTGSIPVSLSNASKLEVIQIANNSFSGK----------------------FSVNFGGMKNLSHLILQSSNLGSGESD 318 (445)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~ 318 (445)
.+.+.+ +|.++..+.+|+.+....|.+... .+....+.++|++|++..|++...+..
T Consensus 250 ~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~ 328 (1081)
T KOG0618|consen 250 HNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDN 328 (1081)
T ss_pred hhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchH
Confidence 888874 568888888999888888877521 122234466777777777777664432
Q ss_pred CCccccc-------------------ccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCc-cccCc
Q 042446 319 EMGFINS-------------------LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPS-GIGNL 378 (445)
Q Consensus 319 ~~~~~~~-------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~ 378 (445)
.+.++.. -..++.|+.|.+.+|.+++.....+.... +|+.|++++|++. .+|. .+.++
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~-~fpas~~~kl 406 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLN-SFPASKLRKL 406 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeecccccc-cCCHHHHhch
Confidence 2111110 11245567777777777765555555554 8999999999887 4444 46678
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceec
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
+.|++|+|++|+++ .+|..+..++.|+.|...+|++. ..| .+..++.|+.+|++.|+++..
T Consensus 407 e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 407 EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 88999999999888 78888888999999999999988 667 677889999999999998754
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.8e-24 Score=189.90 Aligned_cols=132 Identities=22% Similarity=0.173 Sum_probs=78.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCC-CcCCCCCCccCcCCCCCCEEE
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLAN-NSLVGKIPANLSYCSRLTVLS 137 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~p~~l~~l~~L~~L~ 137 (445)
...+.++|..|.++...+.++..+++||+|||++|.|+.+-|++|.+++.|.+|-+.+ |.|+......|+++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3456666666666655555566666666666666666666666666666666555554 556644444566666666666
Q ss_pred ccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccc
Q 042446 138 LGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNS 190 (445)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 190 (445)
+..|++.-.....|..+++|..|.+.+|.+.......+..+..++.+.+..|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 66666553444456666666666666666553333355555555555555544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=2.3e-20 Score=185.26 Aligned_cols=265 Identities=26% Similarity=0.289 Sum_probs=188.6
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEee
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 186 (445)
..-..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|. ..++|++|++++|.+. .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 45678899999888 6777664 47899999998887 4554 2578899999998887 34432 467888888
Q ss_pred cccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc
Q 042446 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
.+|.+. .+|.. ..+|+.|++++|.++ .+|.. .++|+.|++++|.+. .+|.. +..|+.|.+++|.+++
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----cccccccccccCcccc
Confidence 888877 34442 256888888888887 55543 367888888888887 45542 4568888888888774
Q ss_pred cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC
Q 042446 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346 (445)
Q Consensus 267 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 346 (445)
+|.. ..+|+.|++++|.++.. +.. .++|+.|++++|++...+ .. ..+|+.|++++|.++ .+
T Consensus 337 -LP~l---p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~LP-------~l---~~~L~~LdLs~N~Lt-~L 397 (788)
T PRK15387 337 -LPTL---PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTSLP-------AL---PSGLKELIVSGNRLT-SL 397 (788)
T ss_pred -cccc---ccccceEecCCCccCCC-CCC---CcccceehhhccccccCc-------cc---ccccceEEecCCccc-CC
Confidence 4432 24788888888888743 221 356778888888776532 11 246888888888877 44
Q ss_pred ChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccc
Q 042446 347 PHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTL 423 (445)
Q Consensus 347 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 423 (445)
|.. +++|+.|++++|.++ .+|.. ..+|+.|++++|++. .+|..+..+++|+.|+|++|++++..+..+
T Consensus 398 P~l----~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 398 PVL----PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCc----ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 432 247888888888887 45543 346777888888887 678888888888888888888887766655
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=3.3e-20 Score=184.14 Aligned_cols=261 Identities=24% Similarity=0.287 Sum_probs=111.1
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
..|+++.+.++ .+|..+. .+|+.|++.+|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++++|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 34555555544 3444332 24555555555554 2332 1244555555555544 22321 234455555555
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 245 (445)
.+. .+|.. ..+|+.|++++|.+. .+|. ..++|+.|++++|.+. .+|... ..|+.|++++|.+. .+|.
T Consensus 273 ~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L~-~LP~ 339 (788)
T PRK15387 273 PLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPT 339 (788)
T ss_pred chh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCCCc---ccccccccccCccc-cccc
Confidence 444 22221 133445555555444 2222 1234555555555544 223211 23444445555443 2332
Q ss_pred ccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccc
Q 042446 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINS 325 (445)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 325 (445)
. +.+|+.|++++|.+++ +|.. .++|+.|++++|.+.. ++.. ..+|+.|++++|.+...+.
T Consensus 340 l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~-------- 399 (788)
T PRK15387 340 L----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPV-------- 399 (788)
T ss_pred c----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCC--------
Confidence 1 2345555555555442 2221 1244445555554442 1211 1345555555554443210
Q ss_pred ccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChh
Q 042446 326 LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE 398 (445)
Q Consensus 326 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 398 (445)
..++|+.|++++|.++ .+|.. +.+|+.|++++|+++ .+|..+..+++|+.|++++|++.+..+..
T Consensus 400 --l~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 400 --LPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred --cccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 0134555555555544 23321 124445555555554 34444555555555555555554443333
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=6.6e-23 Score=180.12 Aligned_cols=251 Identities=22% Similarity=0.204 Sum_probs=165.6
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccC-CcCcccCCccccCCCCCCEEec
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQ-NKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l 162 (445)
....++|..|+|+...+.+|+.+++|+.|++++|+|+.+-|.+|.++++|..|-+.+ |+++......|+++..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 457899999999978888999999999999999999999999999999988777666 8998555567999999999999
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc------------ccCCccCcCCCCCc
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS------------GKIPPSICNLSFLV 230 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~l~~l~~L~ 230 (445)
.-|++.....+.+..+++|..|.+.+|.+...--..|..+..++++.+..|.+- ...+..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999999888889999999999999999888433347888899999998877632 11111111111111
Q ss_pred EEEccCCc-------------------------CCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECcc
Q 042446 231 NFSVSQNQ-------------------------IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIAN 285 (445)
Q Consensus 231 ~L~l~~~~-------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (445)
-..+.+.+ ..+..|...+..+++|++|++++|+++..-+.+|.....++.|.|.+
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 11111111 12233333333455555555555555554455555555555555555
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCC
Q 042446 286 NSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRN 340 (445)
Q Consensus 286 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 340 (445)
|++.......|.++..|+.|++++|+++..... ++.....|.+|++-.|
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~------aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG------AFQTLFSLSTLNLLSN 356 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecc------cccccceeeeeehccC
Confidence 555444444455555555555555555543222 3334444555555443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.3e-18 Score=173.93 Aligned_cols=247 Identities=25% Similarity=0.354 Sum_probs=156.0
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEee
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 186 (445)
.+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..+. .+|++|++++|.+. .+|..+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence 45667788777777 4565443 56788888888777 4555443 47888888877776 445433 246777788
Q ss_pred cccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc
Q 042446 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+ .++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcccc
Confidence 777776 4555443 46777888777776 5565443 46777788777776 455433 3467777777777763
Q ss_pred cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC
Q 042446 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346 (445)
Q Consensus 267 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 346 (445)
+|..+ .++|+.|++++|.++. .+..+. ++|+.|++++|++...+ ..+ .++|+.|++++|.++ .+
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP-------~~l--p~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLP-------ETL--PPTITTLDVSRNALT-NL 382 (754)
T ss_pred -CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCC-------hhh--cCCcCEEECCCCcCC-CC
Confidence 34333 2567777777777664 333332 57777777777765422 112 246777777777776 45
Q ss_pred ChhhhhccccCcEEEcccCcccccCCcccc----CccCCCeeeCccCcce
Q 042446 347 PHSITNLSSQLQVLFLGFNQLYGSIPSGIG----NLVNLYLLAMEQNQFI 392 (445)
Q Consensus 347 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~n~~~ 392 (445)
|..+. .+|+.|++++|+++ .+|..+. ..+.+..+++.+|.+.
T Consensus 383 P~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 55433 25777777777776 4554433 2366777777777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=2.2e-18 Score=172.33 Aligned_cols=247 Identities=23% Similarity=0.358 Sum_probs=165.1
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEc
Q 042446 131 SRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAI 210 (445)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 210 (445)
.+...|+++++.++ .+|..+. +.|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45678888888777 5665543 47888888888887 4554443 57888888888877 4555443 47888888
Q ss_pred cCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcc
Q 042446 211 GVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG 290 (445)
Q Consensus 211 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (445)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+ +++|+.|++++|.+++ +|..+. ++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 888887 6666553 46888888888776 566544 3578888888887774 443332 367778888887763
Q ss_pred cCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCccccc
Q 042446 291 KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGS 370 (445)
Q Consensus 291 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 370 (445)
. +..+ .++|+.|++++|.+...+ ..+ +++|+.|++++|+++ .+|..+ +++|++|++++|.++ .
T Consensus 319 L-P~~l--~~sL~~L~Ls~N~Lt~LP-------~~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~ 381 (754)
T PRK15370 319 L-PETL--PPGLKTLEAGENALTSLP-------ASL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-N 381 (754)
T ss_pred C-Cccc--cccceeccccCCccccCC-------hhh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-C
Confidence 2 3222 257778888877765532 122 257788888887776 455433 237788888888777 4
Q ss_pred CCccccCccCCCeeeCccCcceecCChhh----hCCCCCCeEEccCCccc
Q 042446 371 IPSGIGNLVNLYLLAMEQNQFIGTIPQEM----GKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 371 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~L~~L~l~~n~i~ 416 (445)
+|..+. .+|+.|++++|++. .+|..+ ...+.+..+++.+|++.
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 555443 35777777777776 455433 33466777788777776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=2.8e-20 Score=172.75 Aligned_cols=282 Identities=20% Similarity=0.270 Sum_probs=146.1
Q ss_pred EEccCCcCc-ccCCccccCCCCCCEEecccccCCC----CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEc
Q 042446 136 LSLGQNKLV-GSIPFEFVFLYKLKGLSLHKNNLTG----GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAI 210 (445)
Q Consensus 136 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 210 (445)
|++..+.++ ......+..+.+|+.++++++.+.. .++..+...+.+++++++++.+.+ .+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~----------- 70 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL----------- 70 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH-----------
Confidence 445555544 2233334455566667666666532 123334444555555555554431 00000
Q ss_pred cCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCC---CCccEEEccCCcCcc----cCcccCcCC-CCCCEEE
Q 042446 211 GVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNF---PNLKFFQIDQNFFTG----SIPVSLSNA-SKLEVIQ 282 (445)
Q Consensus 211 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~----~~~~~l~~~-~~L~~L~ 282 (445)
..++..+..+++|+.|++++|.+.+..+..+.. + ++|++|++++|.+.+ .+...+..+ ++|+.|+
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLES-LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHH-HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 011222333445555555554443222222211 1 235555555555542 112233444 6666667
Q ss_pred CccCcCccc----CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChh----hhhcc
Q 042446 283 IANNSFSGK----FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHS----ITNLS 354 (445)
Q Consensus 283 l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~~ 354 (445)
+++|.+++. ....+..+++|++|++++|.+.+.... .+...+..+++|++|++++|.+.+..... +...+
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR--ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH--HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 666666521 223345556677777777666541110 12233445567777777777665332222 22232
Q ss_pred ccCcEEEcccCcccccCCcccc-----CccCCCeeeCccCccee----cCChhhhCCCCCCeEEccCCccccc----ccc
Q 042446 355 SQLQVLFLGFNQLYGSIPSGIG-----NLVNLYLLAMEQNQFIG----TIPQEMGKLLNLQGLDFGGNHFSGK----IPS 421 (445)
Q Consensus 355 ~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~----~~~ 421 (445)
+|++|++++|.+++.....+. ..+.|++|++++|.++. .+...+..+++|+.+++++|++++. ...
T Consensus 222 -~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 222 -SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred -CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 677777777776642222221 13678888888887752 2344556667888888888888754 334
Q ss_pred cccCC-CCCCeEEccCCcc
Q 042446 422 TLGNL-SSLSEIVLSNNNL 439 (445)
Q Consensus 422 ~l~~l-~~L~~l~l~~n~~ 439 (445)
.+... +.|++++|.+|++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 301 SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhhcCCchhhcccCCCCC
Confidence 44445 6888888888764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=2.4e-20 Score=173.10 Aligned_cols=281 Identities=21% Similarity=0.214 Sum_probs=172.1
Q ss_pred EEECCCCcCC-CCCCccCcCCCCCCEEEccCCcCccc----CCccccCCCCCCEEecccccCCC------CCCccCCCCC
Q 042446 111 ALFLANNSLV-GKIPANLSYCSRLTVLSLGQNKLVGS----IPFEFVFLYKLKGLSLHKNNLTG------GISPFLGNLT 179 (445)
Q Consensus 111 ~L~l~~~~i~-~~~p~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~~~ 179 (445)
.|++.++.+. ......+..+.+|++|+++++.++.. ++..+...+++++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776 34555667778899999999988532 45556678889999999887662 1112233444
Q ss_pred CcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCC----CCcccccCC-CCc
Q 042446 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS----LPSCLGLNF-PNL 254 (445)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~~-~~L 254 (445)
+|+.|++++|.+....+..+..+.. . ++|++|++++|.+.+. +...+.. + ++|
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~-~~~~L 139 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKD-LPPAL 139 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHh-CCCCc
Confidence 5555555555443222222222211 1 2255555555544321 1111222 3 566
Q ss_pred cEEEccCCcCcc----cCcccCcCCCCCCEEECccCcCcccC----cccccCCCCCCEEEccCCcCCCCCCCCCcccccc
Q 042446 255 KFFQIDQNFFTG----SIPVSLSNASKLEVIQIANNSFSGKF----SVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326 (445)
Q Consensus 255 ~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 326 (445)
++|++++|.+++ .+...+..+++|++|++++|.+.+.. ...+..+++|+.|++++|.+.+.... .+...+
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~~ 217 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS--ALAETL 217 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH--HHHHHh
Confidence 677777666652 22334556677888888888776422 22345567888888888877543221 234456
Q ss_pred cCCCCCcEEEccCCcceecCChhhhhc----cccCcEEEcccCcccc----cCCccccCccCCCeeeCccCcceec----
Q 042446 327 ANCSKLRVLSFGRNQFRGVLPHSITNL----SSQLQVLFLGFNQLYG----SIPSGIGNLVNLYLLAMEQNQFIGT---- 394 (445)
Q Consensus 327 ~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~---- 394 (445)
..+++|++|++++|.+++.....+... .+.|++|++++|.+++ .+...+..+++|+.+++++|.+...
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 678889999999888775433333332 1489999999998862 2334455668899999999988844
Q ss_pred CChhhhCC-CCCCeEEccCCcc
Q 042446 395 IPQEMGKL-LNLQGLDFGGNHF 415 (445)
Q Consensus 395 ~~~~~~~~-~~L~~L~l~~n~i 415 (445)
....+... +.|+++++.+|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 298 LAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhhcCCchhhcccCCCCC
Confidence 44455555 7899999888763
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=4.9e-19 Score=138.45 Aligned_cols=161 Identities=32% Similarity=0.522 Sum_probs=96.7
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.+++.+.+++|.++ .+|+.++.+.+|++|++.+|+++ ++|.+++.+++|+.|++.-|.+. .+|.+|+.+|.|+.|++
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 45555666666664 45666666666666666666665 56666666666666666655555 56666666666666666
Q ss_pred cCCcCcc-cCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcc
Q 042446 139 GQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG 217 (445)
Q Consensus 139 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 217 (445)
.+|.+.. .+|..|..+..|+.|++++|.+. .+|..++++.+|+.|.+..|.+- .+|..++.+..|++|++.+|.++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence 6665542 24555555566666666666555 45555666666666666666555 45556666666666666666665
Q ss_pred cCCccCcC
Q 042446 218 KIPPSICN 225 (445)
Q Consensus 218 ~~~~~l~~ 225 (445)
.+|..+++
T Consensus 187 vlppel~~ 194 (264)
T KOG0617|consen 187 VLPPELAN 194 (264)
T ss_pred ecChhhhh
Confidence 55555444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.8e-18 Score=135.32 Aligned_cols=158 Identities=29% Similarity=0.455 Sum_probs=116.3
Q ss_pred cccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 042446 78 HIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKL 157 (445)
Q Consensus 78 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (445)
++..+.+++.|.+++|.++ ..|..+..+.+|++|++.+|+++ .+|..+..+++|+.|+++-|++. ..|.+|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 4556777888888888887 66667888888888888888888 77888888888888888888776 778888888888
Q ss_pred CEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccC
Q 042446 158 KGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQ 236 (445)
Q Consensus 158 ~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 236 (445)
+.|++.+|++.. .+|..|..+..|+.|.+++|.+. .+|..++++++|+.|.+..|.+- .+|..++.+.+|++|++.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 888888877653 45555555666666667666665 56666666666666666666665 5666666666666666666
Q ss_pred CcCC
Q 042446 237 NQIH 240 (445)
Q Consensus 237 ~~~~ 240 (445)
|++.
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 6554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.42 E-value=2.1e-12 Score=129.00 Aligned_cols=150 Identities=31% Similarity=0.475 Sum_probs=121.2
Q ss_pred cChhhHHHHHHHHHhccCCCCCCCCCCCCCCCC----cceeeeEeCCCC----CcEEEEEcCCCCCcccccccccCCCCC
Q 042446 14 FEEGDRAALQAFKSMIAHDPQRILNSWNDSRHF----CEWDGVTCGRRH----RRVIALDLMSKALSGSLSPHIGNLSFL 85 (445)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~~~----c~~~~~~~~~~~----~~v~~l~l~~~~~~~~~~~~l~~l~~L 85 (445)
....+..++.++++... ++.. ..|..+ .| |.|.|+.|.... ..|+.++|+++.+.+.+|..+..+++|
T Consensus 369 t~~~~~~aL~~~k~~~~-~~~~--~~W~g~-~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L 444 (623)
T PLN03150 369 TLLEEVSALQTLKSSLG-LPLR--FGWNGD-PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444 (623)
T ss_pred cCchHHHHHHHHHHhcC-Cccc--CCCCCC-CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence 34567889999999875 3332 378643 33 279999996321 258899999999999999999999999
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCC-CCCCEEeccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFL-YKLKGLSLHK 164 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~ 164 (445)
+.|+|++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+... .++..+++.+
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 999999999998899889999999999999999998899999999999999999999988888877653 4566777777
Q ss_pred ccC
Q 042446 165 NNL 167 (445)
Q Consensus 165 ~~~ 167 (445)
|..
T Consensus 525 N~~ 527 (623)
T PLN03150 525 NAG 527 (623)
T ss_pred Ccc
Confidence 653
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.32 E-value=1.1e-13 Score=120.79 Aligned_cols=239 Identities=19% Similarity=0.229 Sum_probs=134.7
Q ss_pred cCCCCCCcceEeecccccccc----cCcccCCCCCCCEEEccCC---CCcccCC-------ccCcCCCCCcEEEccCCcC
Q 042446 174 FLGNLTFLELVSLSYNSFEGN----IPDSLGQLKELKSLAIGVN---NLSGKIP-------PSICNLSFLVNFSVSQNQI 239 (445)
Q Consensus 174 ~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n---~~~~~~~-------~~l~~l~~L~~L~l~~~~~ 239 (445)
.+..+..++.+++++|.+... +...+.+.++|+..++++- .....+| +.+..+++|+.++++.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345667888888888887642 3345566778888887652 1222333 2334556788888888876
Q ss_pred CCCCCccc---ccCCCCccEEEccCCcCcccCc-------------ccCcCCCCCCEEECccCcCcccCc----ccccCC
Q 042446 240 HGSLPSCL---GLNFPNLKFFQIDQNFFTGSIP-------------VSLSNASKLEVIQIANNSFSGKFS----VNFGGM 299 (445)
Q Consensus 240 ~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~ 299 (445)
....+..+ ...+..|++|.+.+|.+...-. .-...-+.|+++..+.|++.+... ..|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 54333322 2236677777777777652111 122344667777777776654322 234455
Q ss_pred CCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC----ChhhhhccccCcEEEcccCcccccCCccc
Q 042446 300 KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL----PHSITNLSSQLQVLFLGFNQLYGSIPSGI 375 (445)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 375 (445)
+.|+.+.++.|.+...... -+...+..|+.|+.|++.+|.++... ...+..++ +|++|++++|.+.......+
T Consensus 185 ~~leevr~~qN~I~~eG~~--al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVT--ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred cccceEEEecccccCchhH--HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeecccccccccccHHHH
Confidence 6777777777766543321 23445666777777777777665332 22233344 56666666666543222221
Q ss_pred -----cCccCCCeeeCccCccee----cCChhhhCCCCCCeEEccCCcc
Q 042446 376 -----GNLVNLYLLAMEQNQFIG----TIPQEMGKLLNLQGLDFGGNHF 415 (445)
Q Consensus 376 -----~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i 415 (445)
...|+|+.+.+.+|.++. .+..++...+.|+.|+|++|++
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 224566666666666542 1223444556666666666666
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.31 E-value=2.2e-13 Score=118.94 Aligned_cols=238 Identities=18% Similarity=0.246 Sum_probs=116.0
Q ss_pred cCCCCCCCEEEccCCCCcc----cCCccCcCCCCCcEEEccCCcC---CCCCCccc------ccCCCCccEEEccCCcCc
Q 042446 199 LGQLKELKSLAIGVNNLSG----KIPPSICNLSFLVNFSVSQNQI---HGSLPSCL------GLNFPNLKFFQIDQNFFT 265 (445)
Q Consensus 199 l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~---~~~~~~~~------~~~~~~L~~L~l~~~~~~ 265 (445)
+..+..++++++++|.+.. .+...+.+.++|+..+++.--. ...+|..+ ...+|+|++++|++|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3445566666666666542 2233344445555555544311 11222211 112456666666666655
Q ss_pred ccCcc----cCcCCCCCCEEECccCcCcccCc-------------ccccCCCCCCEEEccCCcCCCCCCCCCcccccccC
Q 042446 266 GSIPV----SLSNASKLEVIQIANNSFSGKFS-------------VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLAN 328 (445)
Q Consensus 266 ~~~~~----~l~~~~~L~~L~l~~~~~~~~~~-------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 328 (445)
...+. .+.++..|+.|.|.+|.+....- ...+.-+.|+.+...+|++.+.... .+...+..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~--~~A~~~~~ 183 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT--ALAEAFQS 183 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH--HHHHHHHh
Confidence 33222 23455666666666665532111 1123445666666666665544332 23334455
Q ss_pred CCCCcEEEccCCcceec----CChhhhhccccCcEEEcccCccccc----CCccccCccCCCeeeCccCcceecCChh--
Q 042446 329 CSKLRVLSFGRNQFRGV----LPHSITNLSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGTIPQE-- 398 (445)
Q Consensus 329 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~-- 398 (445)
++.|+.+.+++|.+... +...+...+ +|+.||+++|.++.. +...++.++.|+.+++++|.+...-...
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 56666666666655322 112233333 666666666665522 2233455556666666666554322211
Q ss_pred --h-hCCCCCCeEEccCCccccc----ccccccCCCCCCeEEccCCcc
Q 042446 399 --M-GKLLNLQGLDFGGNHFSGK----IPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 399 --~-~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~l~l~~n~~ 439 (445)
+ ...|+|+.+.+.+|.|+-. +..++...|.|+.|+|++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1 1245666666666665421 223344456666666666665
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=3.1e-12 Score=109.66 Aligned_cols=138 Identities=28% Similarity=0.296 Sum_probs=95.4
Q ss_pred CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccC
Q 042446 292 FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSI 371 (445)
Q Consensus 292 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 371 (445)
........+.|+++++++|.++.+ -.+..-.|+++.|++++|.++. + ..+..++ +|+.||+++|.++ ..
T Consensus 276 ~~~~~dTWq~LtelDLS~N~I~~i-------DESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~-~L~~LDLS~N~Ls-~~ 344 (490)
T KOG1259|consen 276 ALVSADTWQELTELDLSGNLITQI-------DESVKLAPKLRRLILSQNRIRT-V-QNLAELP-QLQLLDLSGNLLA-EC 344 (490)
T ss_pred eEEecchHhhhhhccccccchhhh-------hhhhhhccceeEEeccccceee-e-hhhhhcc-cceEeecccchhH-hh
Confidence 334445566778888888877653 2356667788888888888762 2 2355565 7888888888876 33
Q ss_pred CccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccccc-ccccCCCCCCeEEccCCcceec
Q 042446 372 PSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP-STLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 372 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
..+-..+.+++.|.+.+|.+. ....++.+-+|..||+++|+|..... ..++++|.|+.+.+.+|++.+.
T Consensus 345 ~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 345 VGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 334445677888888888764 23456677788888888888874432 4677888888888888888763
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.3e-12 Score=114.87 Aligned_cols=189 Identities=19% Similarity=0.210 Sum_probs=81.1
Q ss_pred CCCCCCEEEccCCcCcccCC--ccccCCCCCCEEecccccCCC--CCCccCCCCCCcceEeecccccccccCcccCCCCC
Q 042446 129 YCSRLTVLSLGQNKLVGSIP--FEFVFLYKLKGLSLHKNNLTG--GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKE 204 (445)
Q Consensus 129 ~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 204 (445)
++.+|+.+.+.++.+. ..+ .....|++++.|++++|-+.. .+......+|+|+.|+++.|.+.
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~------------ 185 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS------------ 185 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc------------
Confidence 4556666666665553 222 234455556666665554331 11112233445555555554433
Q ss_pred CCEEEccCCCCcccCCccC-cCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEEC
Q 042446 205 LKSLAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQI 283 (445)
Q Consensus 205 L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (445)
....... ..+++|+.|.++.|.++..-...+...+|+|+.|++.+|............+..|+.|+|
T Consensus 186 ------------~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 186 ------------NFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred ------------CCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 1111111 123445555555554442222222223555555555555311111122233344555555
Q ss_pred ccCcCccc-CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcc
Q 042446 284 ANNSFSGK-FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQF 342 (445)
Q Consensus 284 ~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 342 (445)
++|.+.+. .....+.+|.|+.|+++.+.+.++....-+...-...+++|+.|++..|++
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 55544321 122344555555555555555443322222222234455555555555555
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=8.3e-11 Score=112.40 Aligned_cols=176 Identities=32% Similarity=0.448 Sum_probs=84.2
Q ss_pred CCccEEEccCCcCcccCcccCcCCC-CCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCC
Q 042446 252 PNLKFFQIDQNFFTGSIPVSLSNAS-KLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCS 330 (445)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 330 (445)
+.++.+.+.++.++ .++......+ +|+.|++++|.+. ..+..+..+++|+.|+++.|++.... ......+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~-------~~~~~~~ 186 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLP-------KLLSNLS 186 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhh-------hhhhhhh
Confidence 33444444444444 2333333332 4555555555443 12233445555555555555554421 1222445
Q ss_pred CCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEc
Q 042446 331 KLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDF 410 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 410 (445)
.|+.|++++|+++ .+|....... .|+++.+++|... ..+..+.....+..+.+.+|++. ..+..+..+++++.|++
T Consensus 187 ~L~~L~ls~N~i~-~l~~~~~~~~-~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 187 NLNNLDLSGNKIS-DLPPEIELLS-ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDL 262 (394)
T ss_pred hhhheeccCCccc-cCchhhhhhh-hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecc
Confidence 5555555555554 3333322221 4555666555322 23444555555555555555554 33445555555666666
Q ss_pred cCCcccccccccccCCCCCCeEEccCCcceec
Q 042446 411 GGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 411 ~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
++|.++.. +. +..+.+++.|++++|.++..
T Consensus 263 s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 263 SNNQISSI-SS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccccc-cc-ccccCccCEEeccCcccccc
Confidence 66666522 22 55555666666666655543
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=3.5e-11 Score=123.01 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=36.7
Q ss_pred CcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCC
Q 042446 127 LSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELK 206 (445)
Q Consensus 127 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 206 (445)
|..++.|++||+++|.-.+.+|..++.+.+||+|+++++.+. .+|..+.++.+|.+|++..+.....++.....+.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 344444444444444333344444444444444444444444 4444444444444444444433222233333344444
Q ss_pred EEEcc
Q 042446 207 SLAIG 211 (445)
Q Consensus 207 ~L~l~ 211 (445)
+|.+.
T Consensus 646 ~L~l~ 650 (889)
T KOG4658|consen 646 VLRLP 650 (889)
T ss_pred EEEee
Confidence 44443
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=1.2e-10 Score=111.36 Aligned_cols=155 Identities=32% Similarity=0.479 Sum_probs=79.2
Q ss_pred CcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEc
Q 042446 180 FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQI 259 (445)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 259 (445)
+|+.|++++|.+. .++..++.+++|+.|+++.|++. .++......+.|+.|++++|.+. .+|..... ...|+++.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-LSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-hhhhhhhhh
Confidence 4444444444444 23333444455555555555544 33333334445555555555544 34333221 334555555
Q ss_pred cCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccC
Q 042446 260 DQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGR 339 (445)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 339 (445)
.+|.+. ..+..+.++.++..+.+.+|++.. .+..+..++++++|++++|.+.... .+....+++.|++++
T Consensus 217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~--------~~~~~~~l~~L~~s~ 286 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSIS--------SLGSLTNLRELDLSG 286 (394)
T ss_pred cCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccccccccc--------cccccCccCEEeccC
Confidence 555322 234445556666666666665542 2445566666777777776665532 255566677777777
Q ss_pred CcceecCCh
Q 042446 340 NQFRGVLPH 348 (445)
Q Consensus 340 ~~~~~~~~~ 348 (445)
+.+....+.
T Consensus 287 n~~~~~~~~ 295 (394)
T COG4886 287 NSLSNALPL 295 (394)
T ss_pred ccccccchh
Confidence 666544443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=7.6e-12 Score=112.57 Aligned_cols=135 Identities=22% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccc-cCCccccC
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYG-SIPSGIGN 377 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~ 377 (445)
+++|+.|.++.|.++.. .+...+..+|+|+.|.+..|... .+...-...+..|++|+|++|++-. ........
T Consensus 196 l~~lK~L~l~~CGls~k-----~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWK-----DVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred hhhhheEEeccCCCCHH-----HHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCccccccccccccc
Confidence 44555555555554421 12223344555555555555211 0000011111245555555555331 11122344
Q ss_pred ccCCCeeeCccCcceec-CChh-----hhCCCCCCeEEccCCccccccc--ccccCCCCCCeEEccCCcce
Q 042446 378 LVNLYLLAMEQNQFIGT-IPQE-----MGKLLNLQGLDFGGNHFSGKIP--STLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 378 ~~~L~~L~l~~n~~~~~-~~~~-----~~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~l~l~~n~~~ 440 (445)
++.|+.|+++.|.+... .|.+ ....++|++|++..|+|. .++ ..+..+++|+.+.+.+|.++
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 55555555555554421 1111 233455666666666554 211 22334455555555555543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.1e-11 Score=103.59 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=78.0
Q ss_pred CCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc
Q 042446 274 NASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL 353 (445)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 353 (445)
....|+++++++|.|+.+ .....-.|+++.|+++.|.+..+. .+..+++|+.|++++|.++ .+..+-..+
T Consensus 282 TWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~--------nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KL 351 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ--------NLAELPQLQLLDLSGNLLA-ECVGWHLKL 351 (490)
T ss_pred hHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh--------hhhhcccceEeecccchhH-hhhhhHhhh
Confidence 344566667777666522 333444566677777776664422 3556667777777777665 333332333
Q ss_pred cccCcEEEcccCcccccCCccccCccCCCeeeCccCcceec-CChhhhCCCCCCeEEccCCccc
Q 042446 354 SSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGT-IPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 354 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
- ++++|.++.|.+.. -+++..+.+|..|++++|++... ....++++|.|+.+.+.+|++.
T Consensus 352 G-NIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 352 G-NIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred c-CEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 3 66777777776642 34566666777777777766522 1245667777777777777766
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=4.6e-12 Score=117.59 Aligned_cols=194 Identities=21% Similarity=0.317 Sum_probs=147.5
Q ss_pred CCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEE
Q 042446 227 SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLI 306 (445)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 306 (445)
..-...+++.|++. ++|..+.. +-.|+.+.++.|.+. .+|..+.++..|.+++++.|+++ ..+..++.++ |+.|.
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 34456788888887 88877765 778888889888887 67888888999999999999886 5566666655 78888
Q ss_pred ccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeC
Q 042446 307 LQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAM 386 (445)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 386 (445)
+++|++.. ++..++..+.|..|+.+.|.+. .+|..+..+. +|+.|.++.|.+. .+|..++. -.|..||+
T Consensus 150 ~sNNkl~~-------lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l~-~lp~El~~-LpLi~lDf 218 (722)
T KOG0532|consen 150 VSNNKLTS-------LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHLE-DLPEELCS-LPLIRLDF 218 (722)
T ss_pred EecCcccc-------CCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhhh-hCCHHHhC-Cceeeeec
Confidence 88888876 3445667788888888888887 6777777777 7888888888876 67777774 45888888
Q ss_pred ccCcceecCChhhhCCCCCCeEEccCCcccccccccccC---CCCCCeEEccCCc
Q 042446 387 EQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGN---LSSLSEIVLSNNN 438 (445)
Q Consensus 387 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~---l~~L~~l~l~~n~ 438 (445)
+.|++. .+|-+|..++.|+.|-|.+|++. .-|..+.. .--.++|++.-|+
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 888888 88888888888888888888887 44433322 2244666666664
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=7.5e-11 Score=120.60 Aligned_cols=254 Identities=20% Similarity=0.182 Sum_probs=152.6
Q ss_pred CCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc--CcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcc
Q 042446 105 RLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK--LVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLE 182 (445)
Q Consensus 105 ~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 182 (445)
.....+...+.++.+. .++... .+++|++|-+..|. +....+..|..++.|++|++++|.-.+.+|..++.+-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3456677777777665 344433 34579888888885 4423344478899999999999887779999999999999
Q ss_pred eEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC--CCCCcccccCCCCccEEEcc
Q 042446 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH--GSLPSCLGLNFPNLKFFQID 260 (445)
Q Consensus 183 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~ 260 (445)
+|+++++.+. .+|..+++++.|.+|++..+......+.....+++|++|.+...... ......+. .+.+|+.+...
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~-~Le~L~~ls~~ 676 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELE-NLEHLENLSIT 676 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhh-cccchhhheee
Confidence 9999999998 78999999999999999987765566777777899999988665421 11122222 25555555554
Q ss_pred CCcCcccCcccCcCCCCCC----EEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccccc-CCCCCcEE
Q 042446 261 QNFFTGSIPVSLSNASKLE----VIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLA-NCSKLRVL 335 (445)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L 335 (445)
.... .+...+..++.|. .+.+.++.. ......+..+.+|+.|.+.++.+.+.......- .... .++++..+
T Consensus 677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~-~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEES-LIVLLCFPNLSKV 752 (889)
T ss_pred cchh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccc-cchhhhHHHHHHH
Confidence 3332 0111122222222 222222221 233445667778888888887775432211000 0001 13344444
Q ss_pred EccCCcceecCChhhhhccccCcEEEcccCccc
Q 042446 336 SFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLY 368 (445)
Q Consensus 336 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 368 (445)
.+.++... ..+.+ ...+++|+.|.+..|...
T Consensus 753 ~~~~~~~~-r~l~~-~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 753 SILNCHML-RDLTW-LLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred Hhhccccc-cccch-hhccCcccEEEEeccccc
Confidence 44443222 11111 123347777777777644
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=7e-10 Score=91.05 Aligned_cols=105 Identities=23% Similarity=0.338 Sum_probs=21.8
Q ss_pred CCCEEECccCcCcccCccccc-CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccc
Q 042446 277 KLEVIQIANNSFSGKFSVNFG-GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS 355 (445)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 355 (445)
++++|++++|.|+.+ +.++ .+.+|+.|++++|.+...+ .+..+++|++|++++|+++ .+...+....+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--------~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--------GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--T--------T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--------CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 344455555544322 1222 2344455555555444322 2334445555555555544 22222221112
Q ss_pred cCcEEEcccCccccc-CCccccCccCCCeeeCccCcce
Q 042446 356 QLQVLFLGFNQLYGS-IPSGIGNLVNLYLLAMEQNQFI 392 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~ 392 (445)
+|++|++++|++.+. .-..+..+++|+.|++.+|++.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 455555555544321 0122334445555555555444
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=7.7e-12 Score=116.12 Aligned_cols=167 Identities=29% Similarity=0.390 Sum_probs=76.8
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
.|++.|.+. .+|.....|-.|+.+.++.|.+. .+|..++.+..|.+++++.|++. .+|..++.++ |+.|.+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 334444443 34444444444444444444444 44444445555555555555444 4444444432 44444555444
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccC
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI 223 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 223 (445)
+ .+|..++....|..|+.+.|.+. .+|..+..+.+|+.|.+..|++. .+|..+. --.|..||++.|++. .+|-.|
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhh
Confidence 4 44444444444445555544444 33344444444555544444444 2333333 223444555555544 445455
Q ss_pred cCCCCCcEEEccCCcC
Q 042446 224 CNLSFLVNFSVSQNQI 239 (445)
Q Consensus 224 ~~l~~L~~L~l~~~~~ 239 (445)
.++++|++|-+.+|.+
T Consensus 231 r~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhheeeeeccCCC
Confidence 5555555555555444
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=2.5e-10 Score=93.63 Aligned_cols=125 Identities=32% Similarity=0.339 Sum_probs=40.9
Q ss_pred cCCCCCCEEECCCCcccccCCcccc-CCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccc-cCCCCC
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFG-RLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEF-VFLYKL 157 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L 157 (445)
.+..+++.|+|+++.|+. +. .++ .+.+|+.|++++|.|+. +. ++..+++|++|++++|+++ .+...+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 344457888888888763 32 344 46778888888888873 32 4667788888888888887 343334 357788
Q ss_pred CEEecccccCCCC-CCccCCCCCCcceEeecccccccccCc----ccCCCCCCCEEEc
Q 042446 158 KGLSLHKNNLTGG-ISPFLGNLTFLELVSLSYNSFEGNIPD----SLGQLKELKSLAI 210 (445)
Q Consensus 158 ~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l 210 (445)
++|++++|.+... ....+..+++|+.|++.+|.+... +. .+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 8888888877631 223455677777777777766521 11 2334555555544
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=1.1e-09 Score=109.58 Aligned_cols=110 Identities=30% Similarity=0.564 Sum_probs=95.2
Q ss_pred CCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEc
Q 042446 331 KLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDF 410 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 410 (445)
.++.|+|++|.+.+.+|..+..+. +|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 378899999999888888888877 8999999999998888988999999999999999999889999999999999999
Q ss_pred cCCcccccccccccCC-CCCCeEEccCCccee
Q 042446 411 GGNHFSGKIPSTLGNL-SSLSEIVLSNNNLSG 441 (445)
Q Consensus 411 ~~n~i~~~~~~~l~~l-~~L~~l~l~~n~~~~ 441 (445)
++|.+++.+|..+... .++..+++.+|+...
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcccc
Confidence 9999998899887653 467788888887443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.9e-09 Score=72.62 Aligned_cols=61 Identities=34% Similarity=0.500 Sum_probs=41.4
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcc
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~ 439 (445)
|+|+.|++++|++....+..|..+++|+.|++++|.++...+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566677777766644445666777777777777777655556677777777777777764
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=5.2e-11 Score=102.10 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCc-CcccC-cccccCCCCCCEE
Q 042446 228 FLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNS-FSGKF-SVNFGGMKNLSHL 305 (445)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~-~~~l~~~~~L~~L 305 (445)
.|+++|++...++..-...+...|.+|+.|.+.|+.+.+.+...+.+..+|+.++++++. ++... ...+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666555432222222335566666666666655555555566666666666542 22211 1223455555555
Q ss_pred EccCCcCCC
Q 042446 306 ILQSSNLGS 314 (445)
Q Consensus 306 ~l~~~~~~~ 314 (445)
++++|.+..
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 555555433
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1e-09 Score=105.04 Aligned_cols=222 Identities=21% Similarity=0.239 Sum_probs=95.4
Q ss_pred CCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCE
Q 042446 201 QLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEV 280 (445)
Q Consensus 201 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (445)
.+.+|..+++.+|.+. .+...+..+++|++|++++|.|...-+-.. ++.|+.|++.+|.+.. ...+..++.|+.
T Consensus 93 ~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~---l~~L~~L~l~~N~i~~--~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGLST---LTLLKELNLSGNLISD--ISGLESLKSLKL 166 (414)
T ss_pred cccceeeeeccccchh-hcccchhhhhcchheeccccccccccchhh---ccchhhheeccCcchh--ccCCccchhhhc
Confidence 3344444444444443 222223344444444444444432111111 3335555555554442 122333555555
Q ss_pred EECccCcCcccCc-ccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcE
Q 042446 281 IQIANNSFSGKFS-VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQV 359 (445)
Q Consensus 281 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 359 (445)
+++++|.+..... . ...+.+++.+.+.+|.+..+. .+..+..+..+++..|.++..-+....... .|++
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--------~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~-~L~~ 236 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--------GLDLLKKLVLLSLLDNKISKLEGLNELVML-HLRE 236 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--------chHHHHHHHHhhcccccceeccCcccchhH-HHHH
Confidence 5665555543332 1 344555555666655554422 223333344445555554422111111000 2556
Q ss_pred EEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccc---cccc-ccCCCCCCeEEcc
Q 042446 360 LFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK---IPST-LGNLSSLSEIVLS 435 (445)
Q Consensus 360 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~-l~~l~~L~~l~l~ 435 (445)
+++++|.+. ..+.++..+..+..+++.+|.+.. ...+...+.+..+....+.+... .... ....+.++.+++.
T Consensus 237 l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (414)
T KOG0531|consen 237 LYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLE 313 (414)
T ss_pred HhcccCccc-cccccccccccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccc
Confidence 666666654 222445555566666666655441 11223334444555555554311 1111 3344555555555
Q ss_pred CCccee
Q 042446 436 NNNLSG 441 (445)
Q Consensus 436 ~n~~~~ 441 (445)
+|++..
T Consensus 314 ~~~~~~ 319 (414)
T KOG0531|consen 314 LNPIRK 319 (414)
T ss_pred cCcccc
Confidence 555443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=1.1e-08 Score=68.95 Aligned_cols=60 Identities=32% Similarity=0.420 Sum_probs=44.0
Q ss_pred cCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcc
Q 042446 356 QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHF 415 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 415 (445)
+|++|++++|+++...+..+..+++|+.|++++|.+....+.+|..+++|+.|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 677777777777755455667777777788877777766667777778888888877764
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=2.2e-09 Score=102.83 Aligned_cols=248 Identities=29% Similarity=0.299 Sum_probs=150.6
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKG 159 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (445)
..+..++.++++.+.+. .....+..+.+|+.|++.+|.|. .+...+..+++|++|++++|.++... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhh
Confidence 34566777778877776 33445777888888888888887 33333677888888888888886332 3556677888
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccCcc-cCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCc
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS-LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 238 (445)
|++.+|.+... ..+..++.|+.+++++|.+...-. . ...+..++.+.+.+|.+. ....+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh--cccchHHHHHHHHhhccccc
Confidence 88888887732 334557888888888888774322 1 466777888888887775 22333344444455666665
Q ss_pred CCCCCCcccccCCC--CccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCC
Q 042446 239 IHGSLPSCLGLNFP--NLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGE 316 (445)
Q Consensus 239 ~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 316 (445)
+. .+..... .. .|+.+++.++.+.. .+..+..+.++..+++..+.+.... .+...+.+..+....+.+....
T Consensus 220 i~-~~~~l~~--~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 220 IS-KLEGLNE--LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred ce-eccCccc--chhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchh
Confidence 54 2211111 22 27777777777662 2245666777777777777664322 2334445555555555543221
Q ss_pred CCCCcccccccCCCCCcEEEccCCccee
Q 042446 317 SDEMGFINSLANCSKLRVLSFGRNQFRG 344 (445)
Q Consensus 317 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 344 (445)
.. .-.......+.++.+.+..+....
T Consensus 294 ~~--~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 294 AI--SQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hh--hccccccccccccccccccCcccc
Confidence 11 001113455666666666665543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.1e-10 Score=98.42 Aligned_cols=183 Identities=17% Similarity=0.118 Sum_probs=115.5
Q ss_pred CCccEEEccCCcCcc-cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCC
Q 042446 252 PNLKFFQIDQNFFTG-SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCS 330 (445)
Q Consensus 252 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 330 (445)
+++++++++...++- .+..-++.|.+|+.|.+.++++.+.....+++-.+|+.|+++.+.--... +....+..|+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n----~~~ll~~scs 260 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN----ALQLLLSSCS 260 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh----HHHHHHHhhh
Confidence 358888888776653 22334567788888888888887777777777888888888876432211 2334567788
Q ss_pred CCcEEEccCCcceecCC-hhhhhccccCcEEEcccCcc--cc-cCCccccCccCCCeeeCccCccee-cCChhhhCCCCC
Q 042446 331 KLRVLSFGRNQFRGVLP-HSITNLSSQLQVLFLGFNQL--YG-SIPSGIGNLVNLYLLAMEQNQFIG-TIPQEMGKLLNL 405 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~--~~-~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L 405 (445)
.|.+|+++.|....... ..+....++|..|+++++.- .. .+..-...||+|.+|||++|...+ .....+..++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 88888888776543332 22334445788888887742 11 122223467888888888875432 233456677888
Q ss_pred CeEEccCCccc-ccccccccCCCCCCeEEccCCc
Q 042446 406 QGLDFGGNHFS-GKIPSTLGNLSSLSEIVLSNNN 438 (445)
Q Consensus 406 ~~L~l~~n~i~-~~~~~~l~~l~~L~~l~l~~n~ 438 (445)
+.|.++.|.-. -..--.+...|+|.+|++.|+-
T Consensus 341 ~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 88888887632 1111234566788888877663
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.64 E-value=2.8e-09 Score=90.46 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=68.5
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCCh-----hhhhccccCcEEEcccCccccc---
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPH-----SITNLSSQLQVLFLGFNQLYGS--- 370 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~--- 370 (445)
-|.|+.+....|++...+...+ ...+.....|+++.+.+|.+.-+... .++.. .+|+.||+.+|.++-.
T Consensus 156 kp~Le~vicgrNRlengs~~~~--a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~-~~LevLDlqDNtft~~gS~ 232 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELS--AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYS-HSLEVLDLQDNTFTLEGSR 232 (388)
T ss_pred CCCceEEEeccchhccCcHHHH--HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHh-CcceeeeccccchhhhhHH
Confidence 3556666666655544332211 11122234566666666655422111 11222 3666777766666521
Q ss_pred -CCccccCccCCCeeeCccCcceecCChh----h--hCCCCCCeEEccCCccccccccc-----c--cCCCCCCeEEccC
Q 042446 371 -IPSGIGNLVNLYLLAMEQNQFIGTIPQE----M--GKLLNLQGLDFGGNHFSGKIPST-----L--GNLSSLSEIVLSN 436 (445)
Q Consensus 371 -~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~--~~~~~L~~L~l~~n~i~~~~~~~-----l--~~l~~L~~l~l~~ 436 (445)
+...++.++.|+.|.+.+|-+...-... | ...|+|..|-..+|.+.+.+... + .++|-|..+.+.|
T Consensus 233 ~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 233 YLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 2233455566777777777655322211 1 13566677777776654332211 1 2355666666666
Q ss_pred Ccce
Q 042446 437 NNLS 440 (445)
Q Consensus 437 n~~~ 440 (445)
|++.
T Consensus 313 Nr~~ 316 (388)
T COG5238 313 NRIK 316 (388)
T ss_pred Ccch
Confidence 6654
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=8.8e-09 Score=88.65 Aligned_cols=232 Identities=17% Similarity=0.111 Sum_probs=127.9
Q ss_pred cccccCCCCCCEEECCCCccccc--CCccccCCCCCCEEECCCCcCCC--CCCccCcCCCCCCEEEccCCcCcccCCccc
Q 042446 76 SPHIGNLSFLREINLMDNTIQGE--IPPEFGRLFRLEALFLANNSLVG--KIPANLSYCSRLTVLSLGQNKLVGSIPFEF 151 (445)
Q Consensus 76 ~~~l~~l~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~--~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~ 151 (445)
+..++..+-++.|-+.++.+..+ ....-..+..++.+++.+|.|++ .+...+..+|.|++|+++.|++...+. .+
T Consensus 38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~l 116 (418)
T KOG2982|consen 38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SL 116 (418)
T ss_pred eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cC
Confidence 33444444555666666655422 11112346778888888888773 334455678888888888887763322 22
Q ss_pred -cCCCCCCEEecccccCCC-CCCccCCCCCCcceEeeccccccccc--CcccCCC-CCCCEEEccCCCCcc--cCCccCc
Q 042446 152 -VFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNI--PDSLGQL-KELKSLAIGVNNLSG--KIPPSIC 224 (445)
Q Consensus 152 -~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~l-~~L~~L~l~~n~~~~--~~~~~l~ 224 (445)
....+|++|.+.++.+.. .....+..+|.+++|.++.|.+.... ....... +.++++++.+|.... .....-.
T Consensus 117 p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 356788888888876653 33344667788888888877544211 1112222 345555555543321 1111113
Q ss_pred CCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC-cccCcCCCCCCEEECccCcCcccCcc------ccc
Q 042446 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI-PVSLSNASKLEVIQIANNSFSGKFSV------NFG 297 (445)
Q Consensus 225 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~------~l~ 297 (445)
.++++..+.+..|++...-...-...+|.+..|.+..+++.+.. .+.+.+++.|..|.++++.+.+.... .++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 34666667676666653333333333566666666666665421 24456666677777776666432211 235
Q ss_pred CCCCCCEEEcc
Q 042446 298 GMKNLSHLILQ 308 (445)
Q Consensus 298 ~~~~L~~L~l~ 308 (445)
.+++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 55666655433
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=7.9e-08 Score=82.91 Aligned_cols=203 Identities=12% Similarity=0.135 Sum_probs=101.8
Q ss_pred CCCCcEEEccCCcCCC--CCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCc-ccccCCCCC
Q 042446 226 LSFLVNFSVSQNQIHG--SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFS-VNFGGMKNL 302 (445)
Q Consensus 226 l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L 302 (445)
++.++.+++.+|.++. ++.. +...+|.|+.|+++.|.+.+.+...-....+|++|-+.+..+..... ..+..+|.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4667777777776652 2222 22337777777777776654332211345567777777666543222 234556677
Q ss_pred CEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceec-CChhhhhccccCcEEEcccCccccc-CCccccCccC
Q 042446 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGV-LPHSITNLSSQLQVLFLGFNQLYGS-IPSGIGNLVN 380 (445)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 380 (445)
++|+++.|.+......+-... ..-+.++++++..|..... -...+....+++..+-+..|++... .-++...+|.
T Consensus 149 telHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence 777777764332211110000 0112344444444432210 0111222334666666666655321 1223444556
Q ss_pred CCeeeCccCcceecCC--hhhhCCCCCCeEEccCCcccccccc------cccCCCCCCeEE
Q 042446 381 LYLLAMEQNQFIGTIP--QEMGKLLNLQGLDFGGNHFSGKIPS------TLGNLSSLSEIV 433 (445)
Q Consensus 381 L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~------~l~~l~~L~~l~ 433 (445)
+..|+|..+++. .+. ..+..++.|..|.++++++.+.+-. -+.++++++.|+
T Consensus 226 ~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 226 LSCLNLGANNID-SWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred chhhhhcccccc-cHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 666777666655 222 3456677777777777776543221 134566666544
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=4.6e-08 Score=83.25 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCCccc----ccccccCCCCCCEEECCCCccc---ccC-------CccccCCCCCCEEECCCCcCCCCCC
Q 042446 59 RRVIALDLMSKALSGS----LSPHIGNLSFLREINLMDNTIQ---GEI-------PPEFGRLFRLEALFLANNSLVGKIP 124 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~---~~~-------~~~~~~~~~L~~L~l~~~~i~~~~p 124 (445)
..++.+++++|.+... +...++.-++|+..+++..... ..+ ..++-+|++|+..++++|-+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4567777777776532 2334455566666666654221 112 2234566777777777766654444
Q ss_pred c----cCcCCCCCCEEEccCCcCc
Q 042446 125 A----NLSYCSRLTVLSLGQNKLV 144 (445)
Q Consensus 125 ~----~l~~l~~L~~L~l~~~~~~ 144 (445)
. .+++-..|.+|.+++|.+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC
Confidence 2 2344556666666666443
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.30 E-value=9.6e-09 Score=92.48 Aligned_cols=35 Identities=23% Similarity=0.070 Sum_probs=16.9
Q ss_pred CCCEEEccCCcCcccCC--ccccCCCCCCEEeccccc
Q 042446 132 RLTVLSLGQNKLVGSIP--FEFVFLYKLKGLSLHKNN 166 (445)
Q Consensus 132 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~ 166 (445)
.|+.|.+.+++-.+..+ ..-..++++++|.+.++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence 45666666654332211 112345666666555553
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.23 E-value=1e-08 Score=98.45 Aligned_cols=179 Identities=23% Similarity=0.187 Sum_probs=77.5
Q ss_pred CccccCCCCCCEEECCCCcCCCCCCccCcCC-CCCCEEEccCCcCc---ccCCcc---ccC---CCCCCEEecccccCCC
Q 042446 100 PPEFGRLFRLEALFLANNSLVGKIPANLSYC-SRLTVLSLGQNKLV---GSIPFE---FVF---LYKLKGLSLHKNNLTG 169 (445)
Q Consensus 100 ~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l-~~L~~L~l~~~~~~---~~~~~~---~~~---l~~L~~L~l~~~~~~~ 169 (445)
|-.+..+..|++|.++++.+.. ..++..+ .+|+.|.-.+ ... ..+... +.+ --.|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 5567778888888888887762 2222221 3445443222 111 000000 000 113444555555444
Q ss_pred CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCccccc
Q 042446 170 GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGL 249 (445)
Q Consensus 170 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 249 (445)
.+..++.-++.|+.|++++|++... +.+..++.|++||++.|.+. .+|..-..-..|..|.+++|.+. ++.. +.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL~g-ie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TLRG-IEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hhhh-HHh
Confidence 3333444455555555555555421 24444555555555555554 33322222223555555555443 1111 111
Q ss_pred CCCCccEEEccCCcCcccC-cccCcCCCCCCEEECccCcC
Q 042446 250 NFPNLKFFQIDQNFFTGSI-PVSLSNASKLEVIQIANNSF 288 (445)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~ 288 (445)
+.+|+.|++++|-+.+.- ...+..+..|+.|.|.||.+
T Consensus 253 -LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 253 -LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 444555555554433210 11122333444555555544
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=5.5e-08 Score=93.61 Aligned_cols=126 Identities=25% Similarity=0.244 Sum_probs=62.0
Q ss_pred CCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccC
Q 042446 278 LEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQL 357 (445)
Q Consensus 278 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 357 (445)
|...+.+.|.+. .....+.-++.++.|+++.|++... ..+..|++|++|+|++|.++ .+|.--.... +|
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KL 234 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--------HHHHhcccccccccccchhc-cccccchhhh-hh
Confidence 444455555443 2223334445555666666655442 14555666666666666655 3332211122 46
Q ss_pred cEEEcccCcccccCCccccCccCCCeeeCccCcceecC-ChhhhCCCCCCeEEccCCccc
Q 042446 358 QVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTI-PQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 358 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~ 416 (445)
+.|.+++|.++. --++.++.+|+.||+++|-+.+-- -.-+..+..|+.|+|.+|++-
T Consensus 235 ~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666666666542 124555666666666666444110 112234455666666666553
No 52
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.17 E-value=2.1e-06 Score=52.78 Aligned_cols=40 Identities=50% Similarity=0.974 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhccCCCCCCCCCCCCC--CCCcceeeeEeC
Q 042446 16 EGDRAALQAFKSMIAHDPQRILNSWNDS--RHFCEWDGVTCG 55 (445)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~~~w~~~--~~~c~~~~~~~~ 55 (445)
+.+.++|.+|+.++..+|...+..|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5789999999999998888889999998 799999999995
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.08 E-value=3.4e-08 Score=88.97 Aligned_cols=281 Identities=17% Similarity=0.102 Sum_probs=165.0
Q ss_pred CCCCEEecccccCCC--CCCccCCCCCCcceEeeccccc-ccccCccc-CCCCCCCEEEccCC-CCcccCCc-cCcCCCC
Q 042446 155 YKLKGLSLHKNNLTG--GISPFLGNLTFLELVSLSYNSF-EGNIPDSL-GQLKELKSLAIGVN-NLSGKIPP-SICNLSF 228 (445)
Q Consensus 155 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~l-~~l~~L~~L~l~~n-~~~~~~~~-~l~~l~~ 228 (445)
.-|+.|.+.++.-.+ .+-....+++++++|.+.++.. +......+ ...++|+.+++..+ .+++..-+ ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 347888888875332 2223345788888888877752 22111112 35677888888763 34433333 2235678
Q ss_pred CcEEEccCCc-CCCCCCcccccCCCCccEEEccCCcCcc--cCcccCcCCCCCCEEECccCc-CcccCccc-ccCCCCCC
Q 042446 229 LVNFSVSQNQ-IHGSLPSCLGLNFPNLKFFQIDQNFFTG--SIPVSLSNASKLEVIQIANNS-FSGKFSVN-FGGMKNLS 303 (445)
Q Consensus 229 L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~-l~~~~~L~ 303 (445)
|+++++++|. +.+.-...+..++..++.+...||.=.+ .+...=..++.+.++++..|. +++..... -..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 8888888873 4443444555566667777666653111 011111345556667766663 33332211 23466778
Q ss_pred EEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCc-ceecCChhhhhccccCcEEEcccCcc-c-ccCCccccCccC
Q 042446 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQ-FRGVLPHSITNLSSQLQVLFLGFNQL-Y-GSIPSGIGNLVN 380 (445)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~-~~~~~~~~~~~~ 380 (445)
.+..+++...+.. .+...-.++++|+.+.+..++ +++.-...+....+.|+.+++..+.. + +.+...-.+++.
T Consensus 298 ~l~~s~~t~~~d~----~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 298 VLCYSSCTDITDE----VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hhcccCCCCCchH----HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 8887776543321 122233567888888888875 44333334444444788888887752 2 223333457888
Q ss_pred CCeeeCccCcceecC-----ChhhhCCCCCCeEEccCCcc-cccccccccCCCCCCeEEccCCcc
Q 042446 381 LYLLAMEQNQFIGTI-----PQEMGKLLNLQGLDFGGNHF-SGKIPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 381 L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~l~l~~n~~ 439 (445)
|+.+.++.|...... ...-.....|+.+.+++|+. ++...+.+..+++|+.+++-+|+-
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 888888888665332 22334566788888888884 445567778888999988887763
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=3.3e-06 Score=51.97 Aligned_cols=37 Identities=41% Similarity=0.677 Sum_probs=18.6
Q ss_pred CCCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 404 NLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 404 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555 334445555555555555555543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=2.1e-07 Score=71.01 Aligned_cols=105 Identities=18% Similarity=0.273 Sum_probs=50.1
Q ss_pred CCEEECccCcCccc--CcccccCCCCCCEEEccCCcCCCCCCCCCcccccc-cCCCCCcEEEccCCcceecCChhhhhcc
Q 042446 278 LEVIQIANNSFSGK--FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL-ANCSKLRVLSFGRNQFRGVLPHSITNLS 354 (445)
Q Consensus 278 L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 354 (445)
+..++|+.|++... .+..+....+|+..++++|.+.. ++..+ .+++.++.|++++|.+. .+|..+..++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-------fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~ 100 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-------FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMP 100 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-------CCHHHhhccchhhhhhcchhhhh-hchHHHhhhH
Confidence 34455555544311 11223334445555555555544 22222 23445555555555555 4555555554
Q ss_pred ccCcEEEcccCcccccCCccccCccCCCeeeCccCcce
Q 042446 355 SQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI 392 (445)
Q Consensus 355 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 392 (445)
.|+.|+++.|++. ..|..+..+.++-.|+..+|.+.
T Consensus 101 -aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 101 -ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred -HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 5555555555554 33444444555555555555544
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=7.3e-07 Score=89.44 Aligned_cols=110 Identities=17% Similarity=0.238 Sum_probs=49.2
Q ss_pred CCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcc-cCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccC
Q 042446 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG-KFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLAN 328 (445)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 328 (445)
.+|+|..||+++++++.. ..++++++|+.|.+.+-.+.. .....+-++++|+.|++|...............+.-..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 355555555555554432 345555555555555444332 12223444555555555554433322111112223334
Q ss_pred CCCCcEEEccCCcceecCChhhhhccccCcEEE
Q 042446 329 CSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLF 361 (445)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 361 (445)
+|+|+.|+.++..+.+...+.+....++|+.+.
T Consensus 249 LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 556666666655554444443333333444433
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=3.2e-05 Score=71.83 Aligned_cols=138 Identities=18% Similarity=0.163 Sum_probs=85.9
Q ss_pred CcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccC-cCcccCcccccCCCC
Q 042446 223 ICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN-SFSGKFSVNFGGMKN 301 (445)
Q Consensus 223 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~ 301 (445)
+..+.+++.|++++|.+. .+|. -+++|++|.+++|.--..+|..+ .++|++|.+++| .+. .++ ++
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cc
Confidence 345688999999999776 6672 25679999998865433455444 358999999988 443 222 46
Q ss_pred CCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce--ecCChhhhhccccCcEEEcccCcccccCCccccCcc
Q 042446 302 LSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR--GVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLV 379 (445)
Q Consensus 302 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 379 (445)
|+.|.+..+...... .+| ++|+.|.+..+... ..++ ..+|++|++|++++|... ..|..+. .
T Consensus 114 Le~L~L~~n~~~~L~----~LP------ssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP--~ 177 (426)
T PRK15386 114 VRSLEIKGSATDSIK----NVP------NGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP--E 177 (426)
T ss_pred cceEEeCCCCCcccc----cCc------chHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--c
Confidence 778887665443211 122 34677777543211 0111 135568999999888765 3444433 5
Q ss_pred CCCeeeCccCc
Q 042446 380 NLYLLAMEQNQ 390 (445)
Q Consensus 380 ~L~~L~l~~n~ 390 (445)
+|+.|.++.+.
T Consensus 178 SLk~L~ls~n~ 188 (426)
T PRK15386 178 SLQSITLHIEQ 188 (426)
T ss_pred cCcEEEecccc
Confidence 78888887653
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=2.3e-05 Score=64.21 Aligned_cols=105 Identities=29% Similarity=0.227 Sum_probs=62.0
Q ss_pred CCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCC-CCccCCCCCCcceE
Q 042446 106 LFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGG-ISPFLGNLTFLELV 184 (445)
Q Consensus 106 ~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L 184 (445)
..+...+++++|.+. .-..|..++.|.+|.+++|+++...|.--..+++|++|.+.+|++... ...-+..+|+|++|
T Consensus 41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 345566777777665 223455667777777777777754444334456677777777765521 11235567777777
Q ss_pred eeccccccccc---CcccCCCCCCCEEEccC
Q 042446 185 SLSYNSFEGNI---PDSLGQLKELKSLAIGV 212 (445)
Q Consensus 185 ~l~~~~~~~~~---~~~l~~l~~L~~L~l~~ 212 (445)
.+-+|.++..- ...+.++++|+.||+.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777665211 01344566666666654
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=7.1e-05 Score=69.54 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=90.4
Q ss_pred cCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCC-cCcccCcccCcCCCC
Q 042446 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN-FFTGSIPVSLSNASK 277 (445)
Q Consensus 199 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~ 277 (445)
+..+.+++.|++++|.++ .+|. --.+|++|.+++|.....+|..+ +++|++|++.+| .+. .+| +.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence 445688999999999887 6662 12469999999876555666644 568999999998 443 344 35
Q ss_pred CCEEECccCcCcccCcccccCC-CCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhcccc
Q 042446 278 LEVIQIANNSFSGKFSVNFGGM-KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQ 356 (445)
Q Consensus 278 L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 356 (445)
|+.|++.++.... +..+ ++|+.|.+.+++..... ..+.. -.++|++|++++|... ..|. .+|.+
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~----~lp~~--LPsSLk~L~Is~c~~i-~LP~---~LP~S 178 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQA----RIDNL--ISPSLKTLSLTGCSNI-ILPE---KLPES 178 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheecccccccccc----ccccc--cCCcccEEEecCCCcc-cCcc---ccccc
Confidence 7888887655431 2333 46788887553311100 11111 1267999999998765 3343 24459
Q ss_pred CcEEEcccCc
Q 042446 357 LQVLFLGFNQ 366 (445)
Q Consensus 357 L~~L~l~~~~ 366 (445)
|+.|.++.+.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 9999998763
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.2e-05 Score=48.29 Aligned_cols=36 Identities=36% Similarity=0.551 Sum_probs=19.1
Q ss_pred CCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 380 NLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 380 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
+|+.|++++|++. .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44444555566666666666555
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=2e-06 Score=65.72 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=45.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.+++.+++++|.+....+....+++.++.|++++|.+. ++|..+..++.|+.|++++|.+. ..|..+..+.++-+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 45555666666555322233344455566666666665 55555555666666666666555 44444444555555555
Q ss_pred cCCcCc
Q 042446 139 GQNKLV 144 (445)
Q Consensus 139 ~~~~~~ 144 (445)
.+|...
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 555444
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.3e-05 Score=80.64 Aligned_cols=199 Identities=17% Similarity=0.192 Sum_probs=119.1
Q ss_pred CCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcc-------------cC--cCCCCCCEEECccCcC-
Q 042446 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPV-------------SL--SNASKLEVIQIANNSF- 288 (445)
Q Consensus 225 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------~l--~~~~~L~~L~l~~~~~- 288 (445)
..-++++.++.+............ ...|+++.+.+-......-. .+ ..-.+|++|+++|...
T Consensus 58 ~~f~ltki~l~~~~~~~~~~~~l~--~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~ 135 (699)
T KOG3665|consen 58 RKFNLTKIDLKNVTLQHQTLEMLR--KQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELF 135 (699)
T ss_pred hhheeEEeeccceecchhHHHHHh--hccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchh
Confidence 334677777777655433333332 23377777766432211000 00 1225788888888643
Q ss_pred cccCccccc-CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcc
Q 042446 289 SGKFSVNFG-GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQL 367 (445)
Q Consensus 289 ~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 367 (445)
....+..++ .+|+|+.|.+.+-.+... ++......+|+|..||+++..++.. .++..+. +|+.|.+.+-.+
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~-----dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk-nLq~L~mrnLe~ 207 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDND-----DFSQLCASFPNLRSLDISGTNISNL--SGISRLK-NLQVLSMRNLEF 207 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecch-----hHHHHhhccCccceeecCCCCccCc--HHHhccc-cHHHHhccCCCC
Confidence 333333333 478889988888766553 2455667888889999988887632 5566665 888888888777
Q ss_pred cc-cCCccccCccCCCeeeCccCcceecC--C----hhhhCCCCCCeEEccCCcccccccccc-cCCCCCCeEE
Q 042446 368 YG-SIPSGIGNLVNLYLLAMEQNQFIGTI--P----QEMGKLLNLQGLDFGGNHFSGKIPSTL-GNLSSLSEIV 433 (445)
Q Consensus 368 ~~-~~~~~~~~~~~L~~L~l~~n~~~~~~--~----~~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~l~ 433 (445)
.. ..-..+.++++|+.||++.......- . ++-..+|.|+.||.+++++.+.+.+.+ ..=|+|+.+-
T Consensus 208 e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 208 ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 53 12234567888888888876544211 1 233457888888888888775544333 2335555543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.62 E-value=0.0001 Score=60.55 Aligned_cols=124 Identities=21% Similarity=0.193 Sum_probs=81.3
Q ss_pred CEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCC
Q 042446 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLY 382 (445)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 382 (445)
+++++.+.++..++. .-....+...+++++|.+... ..+..++ .|.+|.+++|.|+..-|.--..+|+|.
T Consensus 22 ~e~~LR~lkip~ien-------lg~~~d~~d~iDLtdNdl~~l--~~lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-------LGATLDQFDAIDLTDNDLRKL--DNLPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLK 91 (233)
T ss_pred cccccccccccchhh-------ccccccccceecccccchhhc--ccCCCcc-ccceEEecCCcceeeccchhhhccccc
Confidence 455555555544321 112234577888888877522 1233344 899999999998866565555678899
Q ss_pred eeeCccCcceecC-ChhhhCCCCCCeEEccCCccccccc---ccccCCCCCCeEEccC
Q 042446 383 LLAMEQNQFIGTI-PQEMGKLLNLQGLDFGGNHFSGKIP---STLGNLSSLSEIVLSN 436 (445)
Q Consensus 383 ~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~l~l~~ 436 (445)
.|.+.+|++.... ...+..||.|++|.+-+|+++..-- -.+..+|+|+.||..+
T Consensus 92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9999888776221 2346678899999999998874421 2456788888887654
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.39 E-value=0.00077 Score=53.06 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=4.9
Q ss_pred CcCCCCCCEEEccC
Q 042446 127 LSYCSRLTVLSLGQ 140 (445)
Q Consensus 127 l~~l~~L~~L~l~~ 140 (445)
|.++.+|+.+.+.+
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 33444444444433
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.31 E-value=0.00072 Score=53.22 Aligned_cols=106 Identities=22% Similarity=0.191 Sum_probs=55.7
Q ss_pred cccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 042446 78 HIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKL 157 (445)
Q Consensus 78 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (445)
.+.++++|+.+.+.. .+......+|..+.+|+.+.+..+ +.......+.+++.++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456677888888875 455455667888888888888774 6545556677777888888865 3332334456667777
Q ss_pred CEEecccccCCCCCCccCCCCCCcceEeecc
Q 042446 158 KGLSLHKNNLTGGISPFLGNLTFLELVSLSY 188 (445)
Q Consensus 158 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (445)
+.+.+..+ +.......+.++ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 77777553 332333345554 666665543
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.25 E-value=4.1e-05 Score=75.40 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=32.0
Q ss_pred ccCccCCCeeeCccCcceecC-ChhhhCCCC--------------CCeEEccCCcc-cccccccccC-CCCCCeEEccCC
Q 042446 375 IGNLVNLYLLAMEQNQFIGTI-PQEMGKLLN--------------LQGLDFGGNHF-SGKIPSTLGN-LSSLSEIVLSNN 437 (445)
Q Consensus 375 ~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~--------------L~~L~l~~n~i-~~~~~~~l~~-l~~L~~l~l~~n 437 (445)
+..++.++.+.+..+...... ...+.+|+. ++.|+++.|.. +...-..... +.+++.+++.++
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~ 437 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGC 437 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCc
Confidence 345666666666666532211 123333443 36666666653 3223333333 555666666665
Q ss_pred cc
Q 042446 438 NL 439 (445)
Q Consensus 438 ~~ 439 (445)
+.
T Consensus 438 ~~ 439 (482)
T KOG1947|consen 438 RV 439 (482)
T ss_pred cc
Confidence 53
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=3.8e-05 Score=75.61 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=34.4
Q ss_pred cCcEEEcccCcccccC-CccccCccC--------------CCeeeCccCcceecC-ChhhhC-CCCCCeEEccCCccc
Q 042446 356 QLQVLFLGFNQLYGSI-PSGIGNLVN--------------LYLLAMEQNQFIGTI-PQEMGK-LLNLQGLDFGGNHFS 416 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~~-~~~~~~~~~--------------L~~L~l~~n~~~~~~-~~~~~~-~~~L~~L~l~~n~i~ 416 (445)
+++.+.+..+...... ...+..|+. ++.|+++.|...... -..... +.+++.+++.++...
T Consensus 363 ~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 363 KLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred CcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 6777777666533211 122333443 578888887654222 222222 677888888888744
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=3.9e-05 Score=66.07 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=71.5
Q ss_pred CCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCC--hhhhCCCCCC
Q 042446 329 CSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP--QEMGKLLNLQ 406 (445)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~ 406 (445)
+.+.+.|++++|.+.+. .....++ .|++|.|+-|+|+.. ..+..|..|++|+|..|.+. .+. +.+.++|+|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp-~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMP-LLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcc-cceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 45678899999988632 2234455 899999999998742 44678889999999999887 333 4567889999
Q ss_pred eEEccCCccccccc-----ccccCCCCCCeEE
Q 042446 407 GLDFGGNHFSGKIP-----STLGNLSSLSEIV 433 (445)
Q Consensus 407 ~L~l~~n~i~~~~~-----~~l~~l~~L~~l~ 433 (445)
.|+|..|+-.+.-+ ..+..+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999988654433 2355678888764
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00048 Score=59.09 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCCCCCEEECccC--cCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce
Q 042446 274 NASKLEVIQIANN--SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343 (445)
Q Consensus 274 ~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 343 (445)
.+++|++|.++.| .+...+......+|+|+++++++|++... +-...+..+.+|..|++.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-----stl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-----STLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-----cccchhhhhcchhhhhcccCCcc
Confidence 3445555555555 23222222223335555555555554431 11223444555566666655544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=7.4e-05 Score=64.39 Aligned_cols=99 Identities=24% Similarity=0.289 Sum_probs=64.0
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCC--cccc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIP--SGIG 376 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~ 376 (445)
+.+.++|++.++.+.++. ...+++.|++|.|+-|+++.. ..+.... +|++|.|+.|.|.+ +. .-+.
T Consensus 18 l~~vkKLNcwg~~L~DIs--------ic~kMp~lEVLsLSvNkIssL--~pl~rCt-rLkElYLRkN~I~s-ldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--------ICEKMPLLEVLSLSVNKISSL--APLQRCT-RLKELYLRKNCIES-LDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHHH--------HHHhcccceeEEeeccccccc--hhHHHHH-HHHHHHHHhccccc-HHHHHHHh
Confidence 456677888888776642 456778888888888877632 2334444 78888888887753 21 2346
Q ss_pred CccCCCeeeCccCcceecCCh-----hhhCCCCCCeEE
Q 042446 377 NLVNLYLLAMEQNQFIGTIPQ-----EMGKLLNLQGLD 409 (445)
Q Consensus 377 ~~~~L~~L~l~~n~~~~~~~~-----~~~~~~~L~~L~ 409 (445)
++|+|+.|.|..|.-.+..+. .+..+|+|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 778888888887765544432 345566676664
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.0014 Score=56.35 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=68.9
Q ss_pred ccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccC--cccccCCccccCccCCCeeeCccCcceec-CChhhhCC
Q 042446 326 LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFN--QLYGSIPSGIGNLVNLYLLAMEQNQFIGT-IPQEMGKL 402 (445)
Q Consensus 326 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~ 402 (445)
...+..|+.+++.+..++.. ..+-.++ +|++|.++.| .+++.+..-...+|+|+++++++|++... -...+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 34556677777777666521 1233344 8999999999 45544444455679999999999987621 11345567
Q ss_pred CCCCeEEccCCcccccc---cccccCCCCCCeEEc
Q 042446 403 LNLQGLDFGGNHFSGKI---PSTLGNLSSLSEIVL 434 (445)
Q Consensus 403 ~~L~~L~l~~n~i~~~~---~~~l~~l~~L~~l~l 434 (445)
.+|..|++.+|..+... ...|.-+++|++++-
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 78889999999876432 134555677777554
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.0021 Score=53.01 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=46.3
Q ss_pred cCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCC-hhh-hCCCCCCeEEccCCc-ccccccccccCCCCCCeE
Q 042446 356 QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP-QEM-GKLLNLQGLDFGGNH-FSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~-~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~l 432 (445)
.++.++-+++.|..+..+.+..+++++.|.+.+|.-.+... +-+ +-.++|+.|+|++|+ |++....++.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45666666666655445555566666666666665432211 011 134567777777665 665555666666666666
Q ss_pred EccC
Q 042446 433 VLSN 436 (445)
Q Consensus 433 ~l~~ 436 (445)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6553
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.92 E-value=0.013 Score=29.81 Aligned_cols=18 Identities=44% Similarity=0.839 Sum_probs=9.1
Q ss_pred CCeEEccCCcccccccccc
Q 042446 405 LQGLDFGGNHFSGKIPSTL 423 (445)
Q Consensus 405 L~~L~l~~n~i~~~~~~~l 423 (445)
|+.|+|++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444434
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.85 E-value=0.00015 Score=69.92 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=115.3
Q ss_pred CCcEEEccCCcCCCCCCcccc---cCCCCccEEEccCCcCcccCc----ccCcCC-CCCCEEECccCcCcccC----ccc
Q 042446 228 FLVNFSVSQNQIHGSLPSCLG---LNFPNLKFFQIDQNFFTGSIP----VSLSNA-SKLEVIQIANNSFSGKF----SVN 295 (445)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~~~~~----~~~ 295 (445)
.+.++.+.+|.+.......+. ...+.|..|++++|.+.+... ..+... ..+++|++..|.+++.. ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 377888888877654333322 236788889999988874222 223333 56777888888776543 334
Q ss_pred ccCCCCCCEEEccCCcCCCCCCCCCccccccc----CCCCCcEEEccCCcceecCChh----hhhccccCcEEEcccCcc
Q 042446 296 FGGMKNLSHLILQSSNLGSGESDEMGFINSLA----NCSKLRVLSFGRNQFRGVLPHS----ITNLSSQLQVLFLGFNQL 367 (445)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~ 367 (445)
+.....++.++++.|.+..... ..+...+. ...++++|++.+|.++...... +......+.++++.+|.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~--~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGL--LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HhcccchhHHHHHhcccchhhh--HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 5567788888888887753211 12223333 3667888888888765322211 222332366688888876
Q ss_pred ccc----CCccccCc-cCCCeeeCccCcceec----CChhhhCCCCCCeEEccCCccccc
Q 042446 368 YGS----IPSGIGNL-VNLYLLAMEQNQFIGT----IPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 368 ~~~----~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
.+. ....+..+ +.++.+++..|+++.. +.+.+..++.++.+.+++|++.+.
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 532 22233444 5678888888887743 345556677888888888887644
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.15 E-value=0.024 Score=28.77 Aligned_cols=12 Identities=42% Similarity=0.276 Sum_probs=5.1
Q ss_pred CcEEEcccCccc
Q 042446 357 LQVLFLGFNQLY 368 (445)
Q Consensus 357 L~~L~l~~~~~~ 368 (445)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444443
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.82 E-value=0.00028 Score=68.06 Aligned_cols=209 Identities=19% Similarity=0.184 Sum_probs=131.9
Q ss_pred CCCEEEccCCCCcccC----CccCcCCCCCcEEEccCCcCCCCCCcccccCC----CCccEEEccCCcCccc----Cccc
Q 042446 204 ELKSLAIGVNNLSGKI----PPSICNLSFLVNFSVSQNQIHGSLPSCLGLNF----PNLKFFQIDQNFFTGS----IPVS 271 (445)
Q Consensus 204 ~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~----~~~~ 271 (445)
.+..+.+.+|.+.... ...+...+.|+.|++++|.+.+.-...+.... ..++.|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3777888888876433 34455678899999999988743322222212 3467778888877643 3455
Q ss_pred CcCCCCCCEEECccCcCccc----Cccccc----CCCCCCEEEccCCcCCCCCCCCCcccccccCCCC-CcEEEccCCcc
Q 042446 272 LSNASKLEVIQIANNSFSGK----FSVNFG----GMKNLSHLILQSSNLGSGESDEMGFINSLANCSK-LRVLSFGRNQF 342 (445)
Q Consensus 272 l~~~~~L~~L~l~~~~~~~~----~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~ 342 (445)
+.....++.+++..|.+... ....+. ...++++|++.++.++..... .+...+...+. +.++++.+|.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--LLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--HHHHHHhccchhhHHHHHHhcCc
Confidence 66688899999999877421 122233 467889999999988753332 22334455555 77799999887
Q ss_pred eecCChhhh----hccccCcEEEcccCcccccC----CccccCccCCCeeeCccCcceecCC----hhhhCCCCCCeEEc
Q 042446 343 RGVLPHSIT----NLSSQLQVLFLGFNQLYGSI----PSGIGNLVNLYLLAMEQNQFIGTIP----QEMGKLLNLQGLDF 410 (445)
Q Consensus 343 ~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l 410 (445)
-+.....+. .....++++++..|.+++.. ...+..++.++.+.+++|.+..... +.......+..+.+
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l 325 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVL 325 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhc
Confidence 644222222 22136789999999987543 3345667899999999998764322 22333445555666
Q ss_pred cCCc
Q 042446 411 GGNH 414 (445)
Q Consensus 411 ~~n~ 414 (445)
.++.
T Consensus 326 ~~~~ 329 (478)
T KOG4308|consen 326 GGTG 329 (478)
T ss_pred cccC
Confidence 5444
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.86 E-value=0.07 Score=25.08 Aligned_cols=12 Identities=50% Similarity=0.628 Sum_probs=4.2
Q ss_pred CCCeEEccCCcc
Q 042446 428 SLSEIVLSNNNL 439 (445)
Q Consensus 428 ~L~~l~l~~n~~ 439 (445)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 344444444443
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.07 E-value=0.046 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=8.1
Q ss_pred CCCCeEEccCCcccccc
Q 042446 403 LNLQGLDFGGNHFSGKI 419 (445)
Q Consensus 403 ~~L~~L~l~~n~i~~~~ 419 (445)
++|+.|+|++|+|++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45555666666555443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.59 E-value=0.01 Score=50.25 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=56.5
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEE
Q 042446 58 HRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137 (445)
Q Consensus 58 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~ 137 (445)
+++++.+|++.+.+.. .-..++.++.+..|+++.+.+. -.|..++....++.++...|+.. ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3677777777776542 3334555666777777777665 56666666667777777777766 6677777777777777
Q ss_pred ccCCcCc
Q 042446 138 LGQNKLV 144 (445)
Q Consensus 138 l~~~~~~ 144 (445)
..++.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7776654
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.13 E-value=0.096 Score=43.57 Aligned_cols=33 Identities=24% Similarity=0.059 Sum_probs=17.1
Q ss_pred cCcEEEcccC-cccccCCccccCccCCCeeeCcc
Q 042446 356 QLQVLFLGFN-QLYGSIPSGIGNLVNLYLLAMEQ 388 (445)
Q Consensus 356 ~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~ 388 (445)
+|+.|++++| .||+..-.++..+++|+.|.+++
T Consensus 152 ~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 152 SLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred chheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 5555555555 25544444445555555555544
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.54 E-value=0.84 Score=24.00 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=8.8
Q ss_pred CCCCeEEccCCccc
Q 042446 403 LNLQGLDFGGNHFS 416 (445)
Q Consensus 403 ~~L~~L~l~~n~i~ 416 (445)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.54 E-value=0.84 Score=24.00 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=8.8
Q ss_pred CCCCeEEccCCccc
Q 042446 403 LNLQGLDFGGNHFS 416 (445)
Q Consensus 403 ~~L~~L~l~~n~i~ 416 (445)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666666
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.83 E-value=0.015 Score=49.24 Aligned_cols=86 Identities=17% Similarity=0.133 Sum_probs=50.3
Q ss_pred cccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 042446 78 HIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKL 157 (445)
Q Consensus 78 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (445)
.+..+...+.||++.+.+- .+..-++.+..|..|+++.+.+. ..|..+.....++.++...|... ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4555666677777766654 33344555555666666666665 55665555555555555555554 555556666666
Q ss_pred CEEeccccc
Q 042446 158 KGLSLHKNN 166 (445)
Q Consensus 158 ~~L~l~~~~ 166 (445)
+++++-++.
T Consensus 114 k~~e~k~~~ 122 (326)
T KOG0473|consen 114 KKNEQKKTE 122 (326)
T ss_pred chhhhccCc
Confidence 665555554
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.63 E-value=1.4 Score=23.26 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=7.0
Q ss_pred CCCeEEccCCccee
Q 042446 428 SLSEIVLSNNNLSG 441 (445)
Q Consensus 428 ~L~~l~l~~n~~~~ 441 (445)
+|++|++++|++++
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 44555555555443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.27 E-value=3.2 Score=21.99 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=7.7
Q ss_pred CCCCeEEccCCccc
Q 042446 403 LNLQGLDFGGNHFS 416 (445)
Q Consensus 403 ~~L~~L~l~~n~i~ 416 (445)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.97 E-value=1.6 Score=23.52 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=9.7
Q ss_pred CCCCeEEccCCccccc
Q 042446 403 LNLQGLDFGGNHFSGK 418 (445)
Q Consensus 403 ~~L~~L~l~~n~i~~~ 418 (445)
++|+.|+|++|.+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4566666666666543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.86 E-value=2.3 Score=41.29 Aligned_cols=62 Identities=26% Similarity=0.237 Sum_probs=37.4
Q ss_pred cCcEEEcccCcccc--cCCccccCccCCCeeeCccCcceecCChhhh--CCCCCCeEEccCCcccc
Q 042446 356 QLQVLFLGFNQLYG--SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMG--KLLNLQGLDFGGNHFSG 417 (445)
Q Consensus 356 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~i~~ 417 (445)
.+..+.+++|++-. .+...-...|+|..|+|++|...-....++. ...-|++|.+.+|++..
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 77788888887642 1222223467888999988822111112222 23457888889988763
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.76 E-value=2.5 Score=41.04 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=20.2
Q ss_pred CCCCCCEEECccCcCcccC--cccccCCCCCCEEEccCC
Q 042446 274 NASKLEVIQIANNSFSGKF--SVNFGGMKNLSHLILQSS 310 (445)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~ 310 (445)
+.+.+..+.+++|++.... ...-...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3456667777777664221 111223466666666666
No 89
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=63.70 E-value=9.1 Score=32.44 Aligned_cols=11 Identities=0% Similarity=-0.001 Sum_probs=4.8
Q ss_pred cEEEccCCcCc
Q 042446 255 KFFQIDQNFFT 265 (445)
Q Consensus 255 ~~L~l~~~~~~ 265 (445)
+++++.+-++.
T Consensus 129 ~elRfqGvNlS 139 (302)
T KOG1665|consen 129 EELRFQGVNLS 139 (302)
T ss_pred hheeeeccccc
Confidence 34444444444
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.42 E-value=7.3 Score=20.37 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=11.8
Q ss_pred CCCCCeEEccCCc-cccc
Q 042446 402 LLNLQGLDFGGNH-FSGK 418 (445)
Q Consensus 402 ~~~L~~L~l~~n~-i~~~ 418 (445)
+++|+.|+|++|. +++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 4678888888875 5543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.32 E-value=73 Score=30.82 Aligned_cols=280 Identities=15% Similarity=0.051 Sum_probs=0.0
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccc---cCCCCCCEEecccccCCCCCCccCCCCCC---
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEF---VFLYKLKGLSLHKNNLTGGISPFLGNLTF--- 180 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~l~~~~~--- 180 (445)
+.+++++++.|.+....|..+..-..= +.+..|..+...-..+ ..-..+.+++++.|.....++..+..+..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Q ss_pred cceEeecccccc---cccCcccCCCCCCCEEEccCCCCc--------ccCCccCcCCCCCcEEEccCCcCCCCCCccc--
Q 042446 181 LELVSLSYNSFE---GNIPDSLGQLKELKSLAIGVNNLS--------GKIPPSICNLSFLVNFSVSQNQIHGSLPSCL-- 247 (445)
Q Consensus 181 L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~n~~~--------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-- 247 (445)
++.++.+...++ ...+-..+..+++...+++.|... +..-..++.-+++ +|++..+....+-+..+
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Q ss_pred ---ccCCCCccEEEccCCcCcc-cCcccCcCCCCCCEEECccCcC--cccCcccccCCCCCCEEEccCCcC---CCCCCC
Q 042446 248 ---GLNFPNLKFFQIDQNFFTG-SIPVSLSNASKLEVIQIANNSF--SGKFSVNFGGMKNLSHLILQSSNL---GSGESD 318 (445)
Q Consensus 248 ---~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~---~~~~~~ 318 (445)
.+....=-++++..|...+ .....=..-..++++...+|.. .+........-++.+.++..+... -.....
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~ 401 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTE 401 (553)
T ss_pred ccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceecccccc
Q ss_pred CCcccccccCCCCCcEEEccCCcceecCChhhhhcc--ccCcEEEcccCcccc----cCCccccCccCCCeeeCccC
Q 042446 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLS--SQLQVLFLGFNQLYG----SIPSGIGNLVNLYLLAMEQN 389 (445)
Q Consensus 319 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~n 389 (445)
.-.+...-...--+..+.++.+......-..+.... +.+..|++++|.... .+|........++.+..+.|
T Consensus 402 a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 402 APPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred chhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC
Done!