Query 042446
Match_columns 445
No_of_seqs 248 out of 3915
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 10:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.8E-52 9.6E-57 429.3 33.8 424 11-444 6-483 (768)
2 4eco_A Uncharacterized protein 100.0 2.2E-51 7.5E-56 413.5 25.9 417 11-440 24-600 (636)
3 3rgz_A Protein brassinosteroid 100.0 5E-48 1.7E-52 397.7 31.7 380 59-445 269-722 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 3.4E-48 1.2E-52 396.6 28.2 412 11-441 263-841 (876)
5 3t6q_A CD180 antigen; protein- 100.0 5.8E-43 2E-47 352.1 36.7 383 59-444 33-517 (606)
6 3t6q_A CD180 antigen; protein- 100.0 8.3E-42 2.9E-46 343.7 35.2 378 59-444 57-540 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-41 4.5E-46 342.2 35.7 370 59-441 32-535 (606)
8 4eco_A Uncharacterized protein 100.0 1.3E-42 4.3E-47 349.7 25.4 330 75-418 198-602 (636)
9 2z63_A TOLL-like receptor 4, v 100.0 1.9E-41 6.4E-46 338.8 29.4 376 59-444 28-535 (570)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1E-41 3.6E-46 339.0 25.0 368 59-444 26-514 (549)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-40 1.3E-44 331.7 32.8 374 58-443 55-561 (606)
12 1ziw_A TOLL-like receptor 3; i 100.0 9.1E-40 3.1E-44 333.2 35.1 381 59-441 25-518 (680)
13 4ecn_A Leucine-rich repeat pro 100.0 8.2E-41 2.8E-45 342.2 26.5 345 75-437 440-861 (876)
14 3v47_A TOLL-like receptor 5B a 100.0 2.2E-40 7.6E-45 321.7 28.1 355 83-444 30-412 (455)
15 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-40 1.1E-44 343.1 27.2 279 58-343 23-375 (844)
16 1ziw_A TOLL-like receptor 3; i 100.0 6.4E-39 2.2E-43 326.9 32.8 377 59-442 49-551 (680)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-39 7.2E-44 320.1 26.5 366 59-442 21-483 (520)
18 3j0a_A TOLL-like receptor 5; m 100.0 5.3E-39 1.8E-43 333.9 27.7 384 59-445 48-544 (844)
19 2z63_A TOLL-like receptor 4, v 100.0 2E-38 6.8E-43 316.9 30.0 368 64-444 12-511 (570)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-38 1.2E-42 313.9 27.6 367 59-442 52-512 (562)
21 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-39 1.1E-43 296.8 18.6 292 14-311 3-302 (313)
22 2z7x_B TOLL-like receptor 1, v 100.0 3.2E-38 1.1E-42 311.7 26.5 360 62-444 3-460 (520)
23 2z81_A CD282 antigen, TOLL-lik 100.0 7.8E-38 2.7E-42 311.1 26.9 376 46-444 3-490 (549)
24 3v47_A TOLL-like receptor 5B a 100.0 6.3E-37 2.1E-41 297.4 29.0 354 86-444 13-388 (455)
25 1o6v_A Internalin A; bacterial 100.0 9.4E-36 3.2E-40 289.5 33.6 344 59-441 46-389 (466)
26 4g8a_A TOLL-like receptor 4; l 100.0 8E-36 2.8E-40 301.9 30.9 142 59-200 52-194 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5E-36 1.7E-40 298.5 27.5 358 62-442 34-488 (562)
28 3o6n_A APL1; leucine-rich repe 100.0 2.3E-35 7.8E-40 280.4 28.9 351 37-418 3-354 (390)
29 2id5_A Lingo-1, leucine rich r 100.0 1.9E-35 6.6E-40 288.6 28.5 321 86-417 14-334 (477)
30 3oja_B Anopheles plasmodium-re 100.0 6.9E-35 2.4E-39 291.8 30.1 354 31-418 3-360 (597)
31 2id5_A Lingo-1, leucine rich r 100.0 6.6E-35 2.3E-39 284.8 29.3 347 64-423 16-363 (477)
32 1o6v_A Internalin A; bacterial 100.0 7.2E-34 2.5E-38 276.2 30.5 328 80-444 43-370 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 4.6E-34 1.6E-38 275.5 28.0 341 59-445 42-392 (457)
34 4fmz_A Internalin; leucine ric 100.0 2.9E-33 9.8E-38 261.8 28.9 307 79-440 40-346 (347)
35 4fmz_A Internalin; leucine ric 100.0 4.9E-33 1.7E-37 260.2 28.2 303 59-416 44-346 (347)
36 3o6n_A APL1; leucine-rich repe 100.0 3.6E-33 1.2E-37 265.2 27.1 310 59-394 45-354 (390)
37 1jl5_A Outer protein YOPM; leu 100.0 1.3E-33 4.5E-38 272.1 23.7 343 59-444 11-415 (454)
38 3bz5_A Internalin-J, INLJ; leu 100.0 4.1E-32 1.4E-36 261.9 31.2 302 74-416 33-352 (457)
39 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-32 8.8E-37 276.2 30.6 371 59-440 76-580 (635)
40 3oja_B Anopheles plasmodium-re 100.0 2.7E-32 9.1E-37 273.1 27.5 310 59-394 51-360 (597)
41 4fcg_A Uncharacterized protein 100.0 5.2E-33 1.8E-37 257.0 15.3 268 14-311 24-312 (328)
42 2ft3_A Biglycan; proteoglycan, 100.0 4.2E-31 1.5E-35 245.3 25.5 243 84-344 34-278 (332)
43 1xku_A Decorin; proteoglycan, 100.0 1.2E-30 4E-35 242.1 27.8 224 83-344 52-277 (330)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-35 6.1E-40 287.7 -6.5 379 59-441 3-441 (461)
45 1xku_A Decorin; proteoglycan, 100.0 2.5E-30 8.6E-35 239.9 28.3 291 108-438 32-330 (330)
46 1jl5_A Outer protein YOPM; leu 100.0 4.5E-30 1.6E-34 247.4 30.8 325 59-444 91-433 (454)
47 1z7x_W Ribonuclease inhibitor; 100.0 6E-35 2E-39 284.0 -3.4 356 84-441 4-412 (461)
48 1ogq_A PGIP-2, polygalacturona 100.0 8.2E-32 2.8E-36 247.5 17.5 252 180-442 51-307 (313)
49 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-30 8E-35 240.3 26.1 288 108-438 34-331 (332)
50 2z80_A TOLL-like receptor 2, v 100.0 9.8E-29 3.3E-33 231.4 18.8 286 39-345 22-316 (353)
51 2z66_A Variable lymphocyte rec 100.0 3.8E-28 1.3E-32 222.8 18.4 253 45-344 5-262 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 6.4E-28 2.2E-32 225.8 19.1 277 130-442 30-316 (353)
53 2z66_A Variable lymphocyte rec 100.0 2.6E-27 8.9E-32 217.2 20.5 281 86-401 10-296 (306)
54 4fcg_A Uncharacterized protein 100.0 2.8E-27 9.6E-32 218.5 20.2 236 81-343 79-314 (328)
55 3ogk_B Coronatine-insensitive 100.0 8.9E-31 3E-35 262.7 -4.5 327 105-441 162-527 (592)
56 1ozn_A Reticulon 4 receptor; N 99.9 2.8E-26 9.5E-31 208.1 23.4 268 86-389 14-284 (285)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-26 3.7E-31 210.8 19.3 223 62-288 14-237 (285)
58 3zyi_A Leucine-rich repeat-con 99.9 8.7E-26 3E-30 218.4 25.6 245 64-314 59-304 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 1.6E-25 5.6E-30 215.8 26.9 246 63-314 47-293 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 1.6E-25 5.4E-30 216.6 26.8 249 84-344 55-304 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 9.3E-26 3.2E-30 217.5 24.9 229 59-290 64-293 (440)
62 3ogk_B Coronatine-insensitive 99.9 1.8E-29 6E-34 253.3 -3.0 352 81-441 110-502 (592)
63 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-25 1.4E-29 219.3 27.9 268 107-426 40-307 (622)
64 3g06_A SSPH2 (leucine-rich rep 99.9 6.3E-25 2.1E-29 218.0 28.6 269 83-403 40-308 (622)
65 1wwl_A Monocyte differentiatio 99.9 2.2E-28 7.4E-33 224.8 2.9 265 38-312 22-308 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 3.5E-27 1.2E-31 217.2 5.4 243 156-420 35-280 (317)
67 3o53_A Protein LRIM1, AGAP0063 99.9 7.1E-27 2.4E-31 215.2 6.7 259 61-364 12-271 (317)
68 2o6q_A Variable lymphocyte rec 99.9 1.8E-24 6.2E-29 194.4 21.3 193 44-240 2-194 (270)
69 2p1m_B Transport inhibitor res 99.9 1E-28 3.6E-33 247.7 -8.2 369 60-439 106-518 (594)
70 1wwl_A Monocyte differentiatio 99.9 1.2E-26 4.2E-31 213.1 4.9 251 153-441 41-310 (312)
71 2p1m_B Transport inhibitor res 99.9 1.9E-27 6.6E-32 238.5 -6.0 351 81-441 103-495 (594)
72 2z62_A TOLL-like receptor 4, v 99.9 2.3E-23 7.8E-28 187.9 20.5 211 75-289 22-237 (276)
73 2z62_A TOLL-like receptor 4, v 99.9 3.3E-23 1.1E-27 186.9 21.2 224 184-418 12-239 (276)
74 3oja_A Leucine-rich immune mol 99.9 6.4E-25 2.2E-29 213.6 10.1 217 81-312 32-249 (487)
75 3oja_A Leucine-rich immune mol 99.9 5.3E-24 1.8E-28 207.1 14.8 238 176-435 31-270 (487)
76 2o6q_A Variable lymphocyte rec 99.9 6.7E-22 2.3E-26 177.6 24.0 203 84-314 17-219 (270)
77 1p9a_G Platelet glycoprotein I 99.9 3.4E-22 1.2E-26 181.0 20.3 203 199-416 6-208 (290)
78 2ca6_A RAN GTPase-activating p 99.9 5.6E-25 1.9E-29 208.4 0.7 243 171-417 24-317 (386)
79 3rfs_A Internalin B, repeat mo 99.9 4.4E-22 1.5E-26 178.9 18.6 203 59-273 41-243 (272)
80 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.5E-26 177.2 21.7 202 79-288 6-207 (290)
81 3goz_A Leucine-rich repeat-con 99.9 3.2E-24 1.1E-28 201.2 4.3 257 160-418 3-299 (362)
82 2ast_B S-phase kinase-associat 99.9 7.8E-24 2.7E-28 196.8 6.1 231 203-444 70-310 (336)
83 3rfs_A Internalin B, repeat mo 99.9 4.4E-22 1.5E-26 178.9 17.1 180 79-263 37-216 (272)
84 3m19_A Variable lymphocyte rec 99.9 9.9E-22 3.4E-26 174.5 18.9 191 45-241 3-193 (251)
85 2ast_B S-phase kinase-associat 99.9 1.5E-23 5.1E-28 194.9 4.1 254 85-376 49-314 (336)
86 2ca6_A RAN GTPase-activating p 99.9 7.6E-24 2.6E-28 200.6 0.4 86 356-441 217-317 (386)
87 4glp_A Monocyte differentiatio 99.9 5.2E-22 1.8E-26 182.1 12.4 203 83-289 64-285 (310)
88 3goz_A Leucine-rich repeat-con 99.9 1.6E-23 5.6E-28 196.4 2.0 268 64-351 3-305 (362)
89 4glp_A Monocyte differentiatio 99.9 2.4E-22 8.4E-27 184.2 9.6 232 180-441 65-308 (310)
90 2xwt_C Thyrotropin receptor; s 99.9 2.8E-21 9.6E-26 170.3 15.9 197 83-286 31-236 (239)
91 2xwt_C Thyrotropin receptor; s 99.9 6.7E-21 2.3E-25 167.9 16.8 197 107-310 31-236 (239)
92 3m19_A Variable lymphocyte rec 99.9 2.3E-20 7.7E-25 165.7 18.4 180 228-418 15-194 (251)
93 1h6u_A Internalin H; cell adhe 99.9 2.2E-20 7.4E-25 170.9 18.2 195 199-417 37-231 (308)
94 1h6u_A Internalin H; cell adhe 99.8 2.3E-20 8E-25 170.6 16.4 193 80-289 38-230 (308)
95 2o6s_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 156.6 16.5 183 44-248 4-186 (208)
96 2o6s_A Variable lymphocyte rec 99.8 5E-19 1.7E-23 152.3 17.3 181 86-277 10-190 (208)
97 4ay9_X Follicle-stimulating ho 99.8 8.5E-19 2.9E-23 163.4 19.4 240 158-414 12-257 (350)
98 4ay9_X Follicle-stimulating ho 99.8 1.5E-18 5.1E-23 161.8 19.7 234 68-309 18-255 (350)
99 3cvr_A Invasion plasmid antige 99.8 4.4E-19 1.5E-23 174.0 15.0 203 39-272 35-250 (571)
100 3e6j_A Variable lymphocyte rec 99.8 4.2E-18 1.5E-22 148.6 17.1 164 37-216 9-172 (229)
101 1h6t_A Internalin B; cell adhe 99.8 4.2E-18 1.4E-22 154.2 15.4 172 224-417 43-214 (291)
102 3cvr_A Invasion plasmid antige 99.8 1.5E-17 5.2E-22 163.1 18.9 186 84-298 60-252 (571)
103 4ezg_A Putative uncharacterize 99.8 3.8E-18 1.3E-22 145.3 11.4 155 273-441 41-195 (197)
104 2v9t_B SLIT homolog 2 protein 99.8 2.3E-17 8E-22 142.9 16.3 150 64-216 16-165 (220)
105 2v9t_B SLIT homolog 2 protein 99.7 3.3E-17 1.1E-21 141.9 16.7 152 86-240 14-165 (220)
106 1h6t_A Internalin B; cell adhe 99.7 1.8E-17 6.1E-22 150.1 13.8 172 80-290 43-214 (291)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 6E-17 2.1E-21 140.3 16.1 151 63-216 15-166 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 6.5E-17 2.2E-21 140.0 15.8 152 86-240 14-166 (220)
109 3e6j_A Variable lymphocyte rec 99.7 1.5E-16 5E-21 138.8 17.7 153 85-241 21-173 (229)
110 1m9s_A Internalin B; cell inva 99.7 4.8E-17 1.6E-21 161.3 16.2 174 223-418 39-212 (605)
111 2xot_A Amphoterin-induced prot 99.7 3.4E-17 1.2E-21 153.2 14.2 175 230-416 21-202 (361)
112 4ezg_A Putative uncharacterize 99.7 2.1E-17 7E-22 140.8 10.3 104 82-189 43-146 (197)
113 2xot_A Amphoterin-induced prot 99.7 6.1E-17 2.1E-21 151.4 14.5 175 86-265 21-202 (361)
114 4b8c_D Glucose-repressible alc 99.7 1E-18 3.4E-23 177.6 2.1 233 15-262 130-369 (727)
115 1m9s_A Internalin B; cell inva 99.7 9.9E-17 3.4E-21 159.0 15.9 190 181-394 23-212 (605)
116 1xeu_A Internalin C; cellular 99.7 5.7E-17 2E-21 144.4 10.4 170 226-418 18-187 (263)
117 1xeu_A Internalin C; cellular 99.6 1.3E-15 4.3E-20 135.7 12.9 150 103-266 37-186 (263)
118 4fs7_A Uncharacterized protein 99.6 3.2E-14 1.1E-18 134.7 22.6 331 75-432 63-393 (394)
119 1dce_A Protein (RAB geranylger 99.6 1.1E-18 3.6E-23 172.1 -9.5 179 128-314 346-547 (567)
120 3sb4_A Hypothetical leucine ri 99.6 1.1E-15 3.9E-20 141.0 10.5 269 154-434 24-328 (329)
121 4fdw_A Leucine rich hypothetic 99.6 1.1E-13 3.7E-18 130.5 23.4 213 83-307 113-330 (401)
122 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7.2E-20 124.8 10.3 133 82-216 23-160 (168)
123 1w8a_A SLIT protein; signaling 99.6 8.3E-15 2.8E-19 123.9 13.7 125 64-191 13-138 (192)
124 3sb4_A Hypothetical leucine ri 99.6 3.2E-15 1.1E-19 137.9 12.1 245 82-337 48-328 (329)
125 1w8a_A SLIT protein; signaling 99.6 1.7E-14 6E-19 121.9 15.1 128 110-240 11-139 (192)
126 1dce_A Protein (RAB geranylger 99.6 8.2E-18 2.8E-22 165.8 -6.6 210 200-434 346-567 (567)
127 2ell_A Acidic leucine-rich nuc 99.6 3.7E-15 1.3E-19 123.3 10.4 133 275-416 23-160 (168)
128 4b8c_D Glucose-repressible alc 99.6 6E-16 2.1E-20 157.3 6.5 182 218-416 215-404 (727)
129 4fdw_A Leucine rich hypothetic 99.6 2.8E-13 9.5E-18 127.7 23.9 249 76-342 129-382 (401)
130 4fs7_A Uncharacterized protein 99.6 2.4E-13 8.1E-18 128.7 21.8 318 95-437 59-376 (394)
131 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.3E-20 121.4 7.2 127 83-211 17-148 (149)
132 2wfh_A SLIT homolog 2 protein 99.6 3.8E-14 1.3E-18 119.8 14.0 124 64-191 15-138 (193)
133 2je0_A Acidic leucine-rich nuc 99.6 1.6E-14 5.5E-19 116.9 10.5 126 276-410 17-147 (149)
134 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.1E-18 116.7 15.0 126 86-215 13-138 (193)
135 2o6r_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 114.5 15.1 110 83-192 28-137 (177)
136 2o6r_A Variable lymphocyte rec 99.5 2.7E-13 9.1E-18 113.1 14.9 127 86-215 10-136 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 6E-14 2.1E-18 116.9 9.4 133 271-416 14-153 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 1.3E-15 4.5E-20 129.7 -3.2 152 276-441 18-186 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.4E-13 8.1E-18 113.3 10.5 130 251-392 18-153 (176)
140 4gt6_A Cell surface protein; l 99.4 5.5E-11 1.9E-15 112.4 24.1 322 85-440 66-391 (394)
141 3g39_A Variable lymphocyte rec 99.4 1.5E-12 5.3E-17 107.5 9.8 104 333-440 12-115 (170)
142 1ds9_A Outer arm dynein; leuci 99.4 1.3E-14 4.6E-19 123.4 -4.4 143 296-444 14-157 (198)
143 3g39_A Variable lymphocyte rec 99.3 8.1E-12 2.8E-16 103.1 12.2 103 63-168 13-115 (170)
144 3un9_A NLR family member X1; l 99.3 7.6E-14 2.6E-18 130.3 -0.2 187 251-440 71-283 (372)
145 4gt6_A Cell surface protein; l 99.3 4.9E-10 1.7E-14 105.8 25.9 302 95-439 51-369 (394)
146 2r9u_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 102.0 12.1 103 63-168 16-118 (174)
147 3un9_A NLR family member X1; l 99.3 1E-13 3.5E-18 129.4 -1.8 187 227-416 72-283 (372)
148 2r9u_A Variable lymphocyte rec 99.3 2.1E-11 7.2E-16 101.0 12.3 80 86-168 15-94 (174)
149 4h09_A Hypothetical leucine ri 99.2 1.9E-08 6.3E-13 94.5 25.9 315 79-427 42-356 (379)
150 4h09_A Hypothetical leucine ri 99.1 6.3E-08 2.1E-12 90.8 25.5 313 59-405 46-358 (379)
151 2ifg_A High affinity nerve gro 99.0 5.1E-10 1.7E-14 103.8 9.8 103 304-416 12-116 (347)
152 2ifg_A High affinity nerve gro 99.0 8.3E-10 2.8E-14 102.4 10.7 102 65-169 14-117 (347)
153 2ra8_A Uncharacterized protein 99.0 3.1E-10 1.1E-14 104.9 7.0 159 250-414 170-341 (362)
154 2ra8_A Uncharacterized protein 99.0 2.9E-10 1E-14 105.1 5.9 160 268-438 164-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 4.5E-09 1.5E-13 87.7 2.8 121 293-416 29-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 6.5E-09 2.2E-13 86.8 2.5 114 325-439 31-163 (185)
157 3e4g_A ATP synthase subunit S, 98.6 1.8E-08 6.2E-13 81.9 2.2 83 331-414 62-150 (176)
158 3e4g_A ATP synthase subunit S, 98.2 4.1E-07 1.4E-11 73.9 2.6 85 300-390 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 3.4E-07 1.2E-11 80.2 2.2 76 356-433 171-257 (267)
160 3rw6_A Nuclear RNA export fact 98.0 5.4E-06 1.9E-10 72.6 5.7 139 45-185 76-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1E-05 3.6E-10 66.9 3.0 120 295-416 36-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 7.6E-06 2.6E-10 67.7 2.1 70 273-344 38-112 (197)
163 3rfe_A Platelet glycoprotein I 96.3 0.0052 1.8E-07 47.2 5.2 56 359-416 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.7 0.026 8.9E-07 43.2 6.6 36 132-167 32-67 (130)
165 2lz0_A Uncharacterized protein 77.0 3 0.0001 29.8 4.2 46 367-413 8-53 (100)
166 2lz0_A Uncharacterized protein 64.4 21 0.0007 25.3 6.3 41 99-140 12-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.8e-52 Score=429.33 Aligned_cols=424 Identities=29% Similarity=0.436 Sum_probs=280.4
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCCCCCCCCCCCcceeeeEeCCCCCcEEEEEcCCCCCccc---cc-----------
Q 042446 11 VAAFEEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGS---LS----------- 76 (445)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~---~~----------- 76 (445)
.++..+.+++|+.+||+.+. ||. .++.|..+.+||.|.||+|+ ..+|+.++++++.+.+. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 44456688899999999997 888 88999988899999999998 37999999999988775 33
Q ss_pred ------------ccccCCCCCCEEECCCCcccccCCc--cccCCCCCCEEECCCCcCCCCCCccC-cCCCCCCEEEccCC
Q 042446 77 ------------PHIGNLSFLREINLMDNTIQGEIPP--EFGRLFRLEALFLANNSLVGKIPANL-SYCSRLTVLSLGQN 141 (445)
Q Consensus 77 ------------~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~l~~~~i~~~~p~~l-~~l~~L~~L~l~~~ 141 (445)
..+..+++|++|+|++|.+.+.+|. .++.+++|++|++++|.+.+..|..+ .++++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 4677778888888888888877777 78888888888888888876666655 67788888888888
Q ss_pred cCcccCCcc---ccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 142 KLVGSIPFE---FVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 142 ~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
.+.+..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+. ++++++|++|++++|.+.+.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 777655544 5566666666666665554332 24556666666666666544444 56666666666666666555
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCC-CCCCEEECccCcCcccCccccc
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNA-SKLEVIQIANNSFSGKFSVNFG 297 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~ 297 (445)
+|..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+..+..+.
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 5555556666666666666555444433 24555555555555554444444432 5555555555555544455555
Q ss_pred CCCCCCEEEccCCcCCCC-CCC------------------CCcccccccCCC-CCcEEEccCCcceecCChhhhhc-ccc
Q 042446 298 GMKNLSHLILQSSNLGSG-ESD------------------EMGFINSLANCS-KLRVLSFGRNQFRGVLPHSITNL-SSQ 356 (445)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~-~~~------------------~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~-~~~ 356 (445)
.+++|++|++++|.+.+. +.. ...++..+..++ +|++|++++|.+++.++..+... .++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 555555555555544320 000 001223333443 55555555555554444444331 125
Q ss_pred CcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccC
Q 042446 357 LQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSN 436 (445)
Q Consensus 357 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~ 436 (445)
|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 77777777777666777777777788888888877777777777788888888888887777777777788888888888
Q ss_pred CcceecCC
Q 042446 437 NNLSGVIP 444 (445)
Q Consensus 437 n~~~~~~p 444 (445)
|++++.+|
T Consensus 476 N~l~~~~p 483 (768)
T 3rgz_A 476 NDLTGEIP 483 (768)
T ss_dssp SCCCSCCC
T ss_pred CcccCcCC
Confidence 88877766
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-51 Score=413.45 Aligned_cols=417 Identities=20% Similarity=0.263 Sum_probs=275.0
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCCC-------CCCCCCCCcce---eeeEeCCCCCcEEEEEcCCCCCccccccccc
Q 042446 11 VAAFEEGDRAALQAFKSMIAHDPQRILN-------SWNDSRHFCEW---DGVTCGRRHRRVIALDLMSKALSGSLSPHIG 80 (445)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~w~~~~~~c~~---~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~ 80 (445)
.++++..|..|+.+++++...++|.... .|..+.++|.| .||.|+.. .+|+.++++++.+.|.+|+.++
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~ 102 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIG 102 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGG
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHh
Confidence 3455668999999999999877776544 89999999999 99999876 7999999999999999999999
Q ss_pred CCCCCCEEECCCCcc-----------------------------------------------------------------
Q 042446 81 NLSFLREINLMDNTI----------------------------------------------------------------- 95 (445)
Q Consensus 81 ~l~~L~~L~L~~~~~----------------------------------------------------------------- 95 (445)
.+++|++|+|++|.+
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 182 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence 999999999998843
Q ss_pred -------------cccCCccccCCCCCCEEECCCCcCCCC-----------------CCccCc--CCCCCCEEEccCCcC
Q 042446 96 -------------QGEIPPEFGRLFRLEALFLANNSLVGK-----------------IPANLS--YCSRLTVLSLGQNKL 143 (445)
Q Consensus 96 -------------~~~~~~~~~~~~~L~~L~l~~~~i~~~-----------------~p~~l~--~l~~L~~L~l~~~~~ 143 (445)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+
T Consensus 183 l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred hhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence 33 677889999999999999999964 898988 999999999999998
Q ss_pred cccCCccccCCCCCCEEeccccc-CCC-CCCccCCCC------CCcceEeecccccccccCc--ccCCCCCCCEEEccCC
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNN-LTG-GISPFLGNL------TFLELVSLSYNSFEGNIPD--SLGQLKELKSLAIGVN 213 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~n 213 (445)
.+.+|..++++++|++|++++|. +++ .+|..+.++ ++|++|++++|.++ .+|. .++++++|++|++++|
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 88899999999999999999998 776 566666554 77777777777777 6666 6777777777777777
Q ss_pred CCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCC-ccEEEccCCcCcccCcccCcCCC--CCCEEECccCcCcc
Q 042446 214 NLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPN-LKFFQIDQNFFTGSIPVSLSNAS--KLEVIQIANNSFSG 290 (445)
Q Consensus 214 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~ 290 (445)
.+.+.+| .+..+++|+.|++++|.+. .+|..+.. +++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 7765566 5555555555555555554 44444433 444 555555555554 3444443322 45555555555444
Q ss_pred cCccccc-------------------------------CCCCCCEEEccCCcCCCCCCCCCcc-cccccCCCCCcEEEcc
Q 042446 291 KFSVNFG-------------------------------GMKNLSHLILQSSNLGSGESDEMGF-INSLANCSKLRVLSFG 338 (445)
Q Consensus 291 ~~~~~l~-------------------------------~~~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~ 338 (445)
..+..+. .+++|++|++++|.+...+...+.. ...+..+++|++|+++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc
Confidence 4444443 4444555555554444322211100 0001222355555555
Q ss_pred CCcceecCChhhh--hccccCcEEEcccCcccccCCccccCccCCCeeeC------ccCcceecCChhhhCCCCCCeEEc
Q 042446 339 RNQFRGVLPHSIT--NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAM------EQNQFIGTIPQEMGKLLNLQGLDF 410 (445)
Q Consensus 339 ~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~n~~~~~~~~~~~~~~~L~~L~l 410 (445)
+|.++ .+|..+. .++ +|++|++++|++++ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|+.|+|
T Consensus 497 ~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp SSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 55555 4444443 333 55555555555553 4555555555555555 234444455555555555555555
Q ss_pred cCCcccccccccccCCCCCCeEEccCCcce
Q 042446 411 GGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 411 ~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
++|+++ .+|..+. ++|++|++++|++.
T Consensus 574 s~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 574 GSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 555553 4444433 45555555555543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-48 Score=397.69 Aligned_cols=380 Identities=34% Similarity=0.549 Sum_probs=318.7
Q ss_pred CcEEEEEcCCCCCcccccccccCC-CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcc-CcCCCCCCEE
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNL-SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN-LSYCSRLTVL 136 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~-l~~l~~L~~L 136 (445)
+.++.++++++.+++.+|..+... ++|++|++++|.+++..|..++.+++|++|++++|.+.+.+|.. +..+++|++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L 348 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence 455666666666665666666554 77777777777777667777777777777777777776556654 6677777777
Q ss_pred EccCCcCcccCCccccCCC-CCCEEecccccCCCCCCccCCC--CCCcceEeecccccccccCcccCCCCCCCEEEccCC
Q 042446 137 SLGQNKLVGSIPFEFVFLY-KLKGLSLHKNNLTGGISPFLGN--LTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVN 213 (445)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 213 (445)
++++|.+.+..|..+.+++ +|++|++++|.+.+..+..+.. +++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 7777777666676666665 7777777777776666666655 678888888888888888888999999999999999
Q ss_pred CCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCc
Q 042446 214 NLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFS 293 (445)
Q Consensus 214 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 293 (445)
.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+++..|..+.++++|++|++++|.+.+..+
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 998888999999999999999999998888888876 8999999999999998889999999999999999999998889
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc--------------------
Q 042446 294 VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL-------------------- 353 (445)
Q Consensus 294 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-------------------- 353 (445)
.++..+++|++|++++|.+.+ .++..+..+++|+.|++++|.+++.+|..+...
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~------~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSG------NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEE------ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred hHHhcCCCCCEEECCCCcccC------cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 999999999999999998876 466788899999999999999988887665321
Q ss_pred -------------------------------------------------cccCcEEEcccCcccccCCccccCccCCCee
Q 042446 354 -------------------------------------------------SSQLQVLFLGFNQLYGSIPSGIGNLVNLYLL 384 (445)
Q Consensus 354 -------------------------------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 384 (445)
.++|++|++++|.+++.+|..+..+++|+.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 1368999999999999999999999999999
Q ss_pred eCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCCC
Q 042446 385 AMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445 (445)
Q Consensus 385 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 445 (445)
++++|.+++.+|..++.+++|+.|+|++|++++.+|..+.++++|++|++++|+++|.+|.
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999994
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-48 Score=396.65 Aligned_cols=412 Identities=19% Similarity=0.254 Sum_probs=277.3
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCCCCCCCCC-----CC--cce------------eeeEeCCCCCcEEEEEcCCCCC
Q 042446 11 VAAFEEGDRAALQAFKSMIAHDPQRILNSWNDSR-----HF--CEW------------DGVTCGRRHRRVIALDLMSKAL 71 (445)
Q Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~~~~~~~~~~~v~~l~l~~~~~ 71 (445)
.++....|.+|+.++++++. +| .|..+. ++ |.| .||.|+. ..+|+.++|+++.+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred ccccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 45566789999999999985 44 564433 44 999 9999987 37999999999999
Q ss_pred cccccccccCCCCCCEEEC-CCCccccc----------------------------------------------------
Q 042446 72 SGSLSPHIGNLSFLREINL-MDNTIQGE---------------------------------------------------- 98 (445)
Q Consensus 72 ~~~~~~~l~~l~~L~~L~L-~~~~~~~~---------------------------------------------------- 98 (445)
.|.+|+.++.+++|++|+| ++|.+.+.
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 9999999999999999999 66643322
Q ss_pred ------------------------CCccccCCCCCCEEECCCCcCCC-----------------CCCccCc--CCCCCCE
Q 042446 99 ------------------------IPPEFGRLFRLEALFLANNSLVG-----------------KIPANLS--YCSRLTV 135 (445)
Q Consensus 99 ------------------------~~~~~~~~~~L~~L~l~~~~i~~-----------------~~p~~l~--~l~~L~~ 135 (445)
+|..++++++|++|++++|.+++ .+|..++ ++++|++
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 67788999999999999999997 3888887 9999999
Q ss_pred EEccCCcCcccCCccccCCCCCCEEeccccc-CCC-CCCccCC-------CCCCcceEeecccccccccCc--ccCCCCC
Q 042446 136 LSLGQNKLVGSIPFEFVFLYKLKGLSLHKNN-LTG-GISPFLG-------NLTFLELVSLSYNSFEGNIPD--SLGQLKE 204 (445)
Q Consensus 136 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~--~l~~l~~ 204 (445)
|++++|.+.+.+|..+.++++|++|++++|. +.+ .+|..+. .+++|++|++++|.+. .+|. .+.++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999888999999999999999999997 776 5665443 4458888888888888 6777 7888888
Q ss_pred CCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCC-ccEEEccCCcCcccCcccCcCCCC--CCEE
Q 042446 205 LKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPN-LKFFQIDQNFFTGSIPVSLSNASK--LEVI 281 (445)
Q Consensus 205 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~~--L~~L 281 (445)
|++|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+.. +++ |+.|++++|.++ .+|..+..++. |+.|
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 888888888887 777 7777888888888888877 67766655 666 888888877776 45655544432 6666
Q ss_pred ECccCcCcccCc-----------------------------ccccCCCCCCEEEccCCcCCCCCCCCCccc-ccccCCCC
Q 042446 282 QIANNSFSGKFS-----------------------------VNFGGMKNLSHLILQSSNLGSGESDEMGFI-NSLANCSK 331 (445)
Q Consensus 282 ~l~~~~~~~~~~-----------------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~~~~ 331 (445)
++++|.+.+..+ ..+..+++|+.|++++|.+...+...+... ..+..+++
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGG
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCC
Confidence 666666554322 112234444444444444443221111000 00122335
Q ss_pred CcEEEccCCcceecCChhhh--hccccCcEEEcccCcccccCCccccCccCCCeeeCcc------CcceecCChhhhCCC
Q 042446 332 LRVLSFGRNQFRGVLPHSIT--NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQ------NQFIGTIPQEMGKLL 403 (445)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~~~~~~ 403 (445)
|+.|++++|+++ .+|..+. .++ +|++|++++|.+++ +|..+..+++|+.|++++ |.+.+.+|..+..++
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~-~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLP-YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred ccEEECCCCCCc-cchHHhhhccCC-CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 555555555554 4444443 333 55555555555553 444455555555555543 444444555555555
Q ss_pred CCCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 404 NLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 404 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
+|+.|+|++|++ +.+|..+. ++|+.|+|++|++..
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 555555555555 24444432 355555555555443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.8e-43 Score=352.13 Aligned_cols=383 Identities=20% Similarity=0.180 Sum_probs=256.7
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..+++++++++.+++..+..+.++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 67899999999999877889999999999999999999888999999999999999999999888899999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCC--EEEccCCCCc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELK--SLAIGVNNLS 216 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~n~~~ 216 (445)
++|.+.+..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..++.+++|+ +|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999866677789999999999999998864434445588888888888877755555555555555 5555555443
Q ss_pred ccC---------------------------------------------------------------------------Cc
Q 042446 217 GKI---------------------------------------------------------------------------PP 221 (445)
Q Consensus 217 ~~~---------------------------------------------------------------------------~~ 221 (445)
+.. +.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 222 22
Q ss_pred cCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccC-cccccCCC
Q 042446 222 SICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKF-SVNFGGMK 300 (445)
Q Consensus 222 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~ 300 (445)
.+..+++|+.|++++|.+. .+|..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. ...+..++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 2444555666666666555 45554433 556666666666555444444555555555555555443222 22344555
Q ss_pred CCCEEEccCCcCCCCC--CCCC------------------cccccccCCCCCcEEEccCCcceecCChh-hhhccccCcE
Q 042446 301 NLSHLILQSSNLGSGE--SDEM------------------GFINSLANCSKLRVLSFGRNQFRGVLPHS-ITNLSSQLQV 359 (445)
Q Consensus 301 ~L~~L~l~~~~~~~~~--~~~~------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~ 359 (445)
+|++|++++|.+.... ...+ ..+..+..+++|++|++++|.+++..+.. +..++ +|++
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~ 429 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKV 429 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCE
Confidence 5555555555443321 0000 11223445556666666666555443332 33333 6666
Q ss_pred EEcccCcccccCCccccCccCCCeeeCccCcceec---CChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccC
Q 042446 360 LFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGT---IPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSN 436 (445)
Q Consensus 360 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~ 436 (445)
|++++|.+++..+..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|++++..|..+..+++|++|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 66666666655566666677777777777766542 224566777777777777777766677777777777777777
Q ss_pred CcceecCC
Q 042446 437 NNLSGVIP 444 (445)
Q Consensus 437 n~~~~~~p 444 (445)
|++++..|
T Consensus 510 N~l~~~~~ 517 (606)
T 3t6q_A 510 NRLTSSSI 517 (606)
T ss_dssp SCCCGGGG
T ss_pred CccCcCCh
Confidence 77776554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.3e-42 Score=343.68 Aligned_cols=378 Identities=19% Similarity=0.158 Sum_probs=248.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
+++++++++++.+.+..|..+.++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 56777777777777666667777777777777777777666667777777777777777766544555666666666666
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCcc--------------------------------------------
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF-------------------------------------------- 174 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------------------------------------- 174 (445)
++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 666665422223333555555555555443222222
Q ss_pred ---------------------------------------------------------CCCCCCcceEeecccccccccCc
Q 042446 175 ---------------------------------------------------------LGNLTFLELVSLSYNSFEGNIPD 197 (445)
Q Consensus 175 ---------------------------------------------------------l~~~~~L~~L~l~~~~~~~~~~~ 197 (445)
+..+++|++|++++|.++ .+|.
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh
Confidence 333344444444444444 3444
Q ss_pred ccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC--cccCcCC
Q 042446 198 SLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI--PVSLSNA 275 (445)
Q Consensus 198 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~ 275 (445)
.+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++......+++|++|++++|.+.+.. +..+..+
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 44444455555555554443334444445555555555554444444433334666666666666665443 4556667
Q ss_pred CCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccc
Q 042446 276 SKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS 355 (445)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 355 (445)
++|++|++++|.+.+..+..+..+++|++|++++|.+.... ....+..+++|++|++++|.+.+..+..+..++
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 449 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-----AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP- 449 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT-----TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc-----cchhhhCcccCCEEECCCCccCCcCHHHHhCCC-
Confidence 77777777777766666666777777777777777665422 122367788899999999988876777777766
Q ss_pred cCcEEEcccCccccc---CCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeE
Q 042446 356 QLQVLFLGFNQLYGS---IPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l 432 (445)
+|++|++++|.+++. .+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+.++++| +|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 899999999888752 23567788889999999988887778888888889999999998888888888888888 88
Q ss_pred EccCCcceecCC
Q 042446 433 VLSNNNLSGVIP 444 (445)
Q Consensus 433 ~l~~n~~~~~~p 444 (445)
++++|++++.+|
T Consensus 529 ~L~~N~l~~~~~ 540 (606)
T 3t6q_A 529 NLASNHISIILP 540 (606)
T ss_dssp ECCSSCCCCCCG
T ss_pred ECcCCcccccCH
Confidence 888888887665
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-41 Score=342.22 Aligned_cols=370 Identities=23% Similarity=0.217 Sum_probs=254.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
+++++++++++.+++..+..+.++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67889999999998777778899999999999999998777888899999999999999998777888999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCCCC--------------
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLK-------------- 203 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~-------------- 203 (445)
++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9998886666778889999999999998875 5688888888888888888877654333222111
Q ss_pred -------------CCCEEEccC----------------------------------------------------------
Q 042446 204 -------------ELKSLAIGV---------------------------------------------------------- 212 (445)
Q Consensus 204 -------------~L~~L~l~~---------------------------------------------------------- 212 (445)
+|++|++++
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 233333333
Q ss_pred -----------------------CCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCC-------
Q 042446 213 -----------------------NNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN------- 262 (445)
Q Consensus 213 -----------------------n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~------- 262 (445)
+.+. .++ .+..+++|++|++++|.+ +.+|.. .+++|++|++++|
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~~ 345 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISFK 345 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEECC
T ss_pred ccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccchh
Confidence 3322 222 455566777777777777 466632 2555555555554
Q ss_pred ---------------cCccc--CcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccc
Q 042446 263 ---------------FFTGS--IPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINS 325 (445)
Q Consensus 263 ---------------~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 325 (445)
.+++. .+..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+..... ...
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~ 419 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTE-----FSA 419 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTT-----TTT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccC-----hhh
Confidence 43322 133344445555555555544432 2445555556666666555544211 124
Q ss_pred ccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccc-cCCccccCccCCCeeeCccCcceecCChhhhCCCC
Q 042446 326 LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYG-SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLN 404 (445)
Q Consensus 326 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 404 (445)
+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++ ..|..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 56677777777777777766666666665 77777777777765 35666777777777777777777666777777777
Q ss_pred CCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 405 LQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 405 L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
|+.|++++|++++.+|..+..+++|++|++++|++++
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence 7777777777776667777777777777777777764
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-42 Score=349.75 Aligned_cols=330 Identities=19% Similarity=0.220 Sum_probs=235.0
Q ss_pred ccccccCCCCCCEEECCCCccccc-----------------CCcccc--CCCCCCEEECCCCcCCCCCCccCcCCCCCCE
Q 042446 75 LSPHIGNLSFLREINLMDNTIQGE-----------------IPPEFG--RLFRLEALFLANNSLVGKIPANLSYCSRLTV 135 (445)
Q Consensus 75 ~~~~l~~l~~L~~L~L~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~ 135 (445)
+|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 666777788888888888887764 777777 7888888888888777777777777788888
Q ss_pred EEccCCc-Ccc-cCCccccCC------CCCCEEecccccCCCCCCc--cCCCCCCcceEeecccccccccC---------
Q 042446 136 LSLGQNK-LVG-SIPFEFVFL------YKLKGLSLHKNNLTGGISP--FLGNLTFLELVSLSYNSFEGNIP--------- 196 (445)
Q Consensus 136 L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~--------- 196 (445)
|++++|+ +++ .+|..++++ ++|++|++++|.+. .+|. .+.++++|++|++++|.+.+.+|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 8888776 665 566555554 66666666666666 5555 56666666666666666654444
Q ss_pred -------------cccCCCCC-CCEEEccCCCCcccCCccCcCCC--CCcEEEccCCcCCCCCCccccc------CCCCc
Q 042446 197 -------------DSLGQLKE-LKSLAIGVNNLSGKIPPSICNLS--FLVNFSVSQNQIHGSLPSCLGL------NFPNL 254 (445)
Q Consensus 197 -------------~~l~~l~~-L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~------~~~~L 254 (445)
..+.++++ |++|++++|.++ .+|..+.... +|+.|++++|.+.+..|..+.. .+++|
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 33444444 555555555555 4444444332 5555555555555544444430 24567
Q ss_pred cEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCC-------CCCCEEEccCCcCCCCCCCCCccccccc
Q 042446 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGM-------KNLSHLILQSSNLGSGESDEMGFINSLA 327 (445)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 327 (445)
++|++++|.+++..+..+..+++|++|++++|.++......+... ++|++|++++|.+.. ++..+.
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~~~ 508 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-------LSDDFR 508 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-------CCGGGS
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-------cChhhh
Confidence 777777777763323334557888888888888874443344333 399999999999875 344565
Q ss_pred --CCCCCcEEEccCCcceecCChhhhhccccCcEEEc------ccCcccccCCccccCccCCCeeeCccCcceecCChhh
Q 042446 328 --NCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL------GFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEM 399 (445)
Q Consensus 328 --~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 399 (445)
.+++|++|++++|++++ +|..+..++ +|++|++ ++|.+.+.+|..+..+++|+.|++++|.+ +.+|..+
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~-~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSS-TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCS-SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCC-CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 89999999999999996 888888877 9999999 45777888999999999999999999999 4888876
Q ss_pred hCCCCCCeEEccCCccccc
Q 042446 400 GKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 400 ~~~~~L~~L~l~~n~i~~~ 418 (445)
. ++|+.|++++|++...
T Consensus 586 ~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 586 T--PNISVLDIKDNPNISI 602 (636)
T ss_dssp C--TTCCEEECCSCTTCEE
T ss_pred h--CcCCEEECcCCCCccc
Confidence 5 8999999999987643
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=338.81 Aligned_cols=376 Identities=22% Similarity=0.235 Sum_probs=262.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..++.++++++.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45777777777777666667777777777777777777666667777777777777777777666667777777777777
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCC----------------
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQ---------------- 201 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---------------- 201 (445)
++|.+....+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7777764444456777777777777777665 35666777777777777776655333222222
Q ss_pred --------------------------------------------------------------------------------
Q 042446 202 -------------------------------------------------------------------------------- 201 (445)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (445)
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence
Q ss_pred -------------CCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccc-------------------c
Q 042446 202 -------------LKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLG-------------------L 249 (445)
Q Consensus 202 -------------l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-------------------~ 249 (445)
+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.... .
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccc
Confidence 344444444444444 344444444 4555555554443 3322110 1
Q ss_pred CCCCccEEEccCCcCcccC--cccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccccc
Q 042446 250 NFPNLKFFQIDQNFFTGSI--PVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLA 327 (445)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 327 (445)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+..... ...+.
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-----~~~~~ 418 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE-----FSVFL 418 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT-----SCTTT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc-----hhhhh
Confidence 2455556666555555322 44455666666677666666544333 6677777777777777655321 13567
Q ss_pred CCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCccc-ccCCccccCccCCCeeeCccCcceecCChhhhCCCCCC
Q 042446 328 NCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLY-GSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQ 406 (445)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 406 (445)
.+++|++|++++|.+.+..+..+..++ +|++|++++|.++ +.+|..+..+++|+.|++++|++.+..|..+..+++|+
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCC-cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 889999999999998877777777776 8999999999987 46788889999999999999999988788999999999
Q ss_pred eEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 407 GLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 407 ~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
.|++++|++++..+..+.++++|++|++++|++++..|
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99999999997777888999999999999999998776
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-41 Score=338.99 Aligned_cols=368 Identities=20% Similarity=0.189 Sum_probs=268.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
+.+++++++++.+++..+..+..+++|++|++++|.+++..+.+++.+++|++|++++|.+.+..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57999999999999888888999999999999999999888889999999999999999999777777999999999999
Q ss_pred cCCcCcc-cCCccccCCCCCCEEecccccCCCCC-CccCCCCCCcceEeecccccccccCcccCCCC-------------
Q 042446 139 GQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGI-SPFLGNLTFLELVSLSYNSFEGNIPDSLGQLK------------- 203 (445)
Q Consensus 139 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~------------- 203 (445)
++|.+.+ ..|..++++++|++|++++|...+.+ +..+..+++|++|++++|.+.+..+..+++++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999875 35678899999999999999844444 46788999999999999999877777776544
Q ss_pred -----------CCCEEEccCCCCcccC--Ccc-CcCC-------------------------------------------
Q 042446 204 -----------ELKSLAIGVNNLSGKI--PPS-ICNL------------------------------------------- 226 (445)
Q Consensus 204 -----------~L~~L~l~~n~~~~~~--~~~-l~~l------------------------------------------- 226 (445)
+|++|++++|.+.+.. +.. ...+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 5555555555554310 000 0001
Q ss_pred --------------------------------------------CCCcEEEccCCcCCCCCCcccccCCCCccEEEccCC
Q 042446 227 --------------------------------------------SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN 262 (445)
Q Consensus 227 --------------------------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (445)
++|+.+++++|.+. .+|..+...+++|++|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 12233333333332 333333223666666666666
Q ss_pred cCcccCc---ccCcCCCCCCEEECccCcCcccCc--ccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEc
Q 042446 263 FFTGSIP---VSLSNASKLEVIQIANNSFSGKFS--VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337 (445)
Q Consensus 263 ~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 337 (445)
.+.+..+ ..+..+++|++|++++|.+++... ..+..+++|++|++++|++.. ++..+..+++|++|++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-------MPDSCQWPEKMRFLNL 417 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-------CCSCCCCCTTCCEEEC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-------CChhhcccccccEEEC
Confidence 6665442 235566677777777776654322 345666777777777776654 3334566677777777
Q ss_pred cCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccc
Q 042446 338 GRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417 (445)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 417 (445)
++|.++ .++..+ +++|++|++++|++++. ...+++|+.|++++|++. .+|. ...+++|+.|++++|++++
T Consensus 418 s~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 418 SSTGIR-VVKTCI---PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TTSCCS-CCCTTS---CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred CCCCcc-cccchh---cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 777765 333322 23778888888877642 247889999999999988 6776 4578999999999999998
Q ss_pred cccccccCCCCCCeEEccCCcceecCC
Q 042446 418 KIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 418 ~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
..+..+..+++|+.|++++|++.+..|
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCcccCEEEecCCCccCCCc
Confidence 888889999999999999999887543
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.7e-40 Score=331.69 Aligned_cols=374 Identities=20% Similarity=0.169 Sum_probs=298.6
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEE
Q 042446 58 HRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLS 137 (445)
Q Consensus 58 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~ 137 (445)
.+++++++++++.+++..|..+.++++|++|++++|.+++..|..++++++|++|++++|.+.+..+..++++++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 37889999999999877788889999999999999999877788899999999999999999876667889999999999
Q ss_pred ccCCcCcc-cCCccccCCCCCCEEecccccCCCCCCccCCCCC---------------------------CcceEeeccc
Q 042446 138 LGQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLT---------------------------FLELVSLSYN 189 (445)
Q Consensus 138 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~---------------------------~L~~L~l~~~ 189 (445)
+++|.+.+ .+|..++++++|++|++++|.+.+..+..+..+. +|+.|++++|
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n 214 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN 214 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC
Confidence 99998875 4688889999999999988877654333222111 3334444333
Q ss_pred ccc-----------------------------------------------------------------------------
Q 042446 190 SFE----------------------------------------------------------------------------- 192 (445)
Q Consensus 190 ~~~----------------------------------------------------------------------------- 192 (445)
.+.
T Consensus 215 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294 (606)
T ss_dssp CSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEES
T ss_pred ccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecC
Confidence 221
Q ss_pred ---cccCcccCCCCCCCEEEccCCCCcccCCc--------------------cCcCCCCCcEEEccCCcCCCC--CCccc
Q 042446 193 ---GNIPDSLGQLKELKSLAIGVNNLSGKIPP--------------------SICNLSFLVNFSVSQNQIHGS--LPSCL 247 (445)
Q Consensus 193 ---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--------------------~l~~l~~L~~L~l~~~~~~~~--~~~~~ 247 (445)
..++ .+..+++|++|++++|.+. .+|. .+..+++|+.|++++|.+.+. ++..+
T Consensus 295 ~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 372 (606)
T 3vq2_A 295 VSIKYLE-DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372 (606)
T ss_dssp CCCCCCC-CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHH
T ss_pred ccchhhh-hccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhh
Confidence 0112 3455566777777777663 4442 233456666666666665532 24444
Q ss_pred ccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCc-ccccCCCCCCEEEccCCcCCCCCCCCCcccccc
Q 042446 248 GLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFS-VNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326 (445)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 326 (445)
.. +++|++|++++|.+.+ ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+... .+..+
T Consensus 373 ~~-~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~ 444 (606)
T 3vq2_A 373 LG-TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID------FDGIF 444 (606)
T ss_dssp HC-CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC------CTTTT
T ss_pred cc-CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc------chhhh
Confidence 44 8999999999999885 56889999999999999999987766 6789999999999999998773 44568
Q ss_pred cCCCCCcEEEccCCcceec-CChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCC
Q 042446 327 ANCSKLRVLSFGRNQFRGV-LPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNL 405 (445)
Q Consensus 327 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 405 (445)
..+++|++|++++|.+.+. +|..+..++ +|++|++++|.+++..|..+..+++|+.|++++|++.+..|..+..+++|
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTT-NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred cCCCCCCEEECCCCcCCCcchHHhhccCC-CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 8999999999999999863 677777776 99999999999998888889999999999999999998889999999999
Q ss_pred CeEEccCCcccccccccccCCC-CCCeEEccCCcceecC
Q 042446 406 QGLDFGGNHFSGKIPSTLGNLS-SLSEIVLSNNNLSGVI 443 (445)
Q Consensus 406 ~~L~l~~n~i~~~~~~~l~~l~-~L~~l~l~~n~~~~~~ 443 (445)
+.|++++|+++ .+|..+..++ +|+++++++|++....
T Consensus 524 ~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 524 STLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 99999999999 7777788887 5999999999987643
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.1e-40 Score=333.17 Aligned_cols=381 Identities=22% Similarity=0.246 Sum_probs=229.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
+++++++++++.+++..+..+.++++|++|++++|.+++..+.+++++++|++|++++|.+.+..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57899999999998777777899999999999999998888888999999999999999998655557889999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccC--CCCCCCEEEccCCCCc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLG--QLKELKSLAIGVNNLS 216 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~n~~~ 216 (445)
++|.+.+..|..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99998866667888999999999999988887788888888899999888887754444332 3466667777666665
Q ss_pred ccCCcc---------------------------------------------------CcCCC--CCcEEEccCCcCCCCC
Q 042446 217 GKIPPS---------------------------------------------------ICNLS--FLVNFSVSQNQIHGSL 243 (445)
Q Consensus 217 ~~~~~~---------------------------------------------------l~~l~--~L~~L~l~~~~~~~~~ 243 (445)
+..+.. +..++ +|+.|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 444433 33322 2555555555554333
Q ss_pred CcccccCCCCccEEEccCCcCcccCcccCcCCCCCC---------------------------------EEECccCcCcc
Q 042446 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLE---------------------------------VIQIANNSFSG 290 (445)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---------------------------------~L~l~~~~~~~ 290 (445)
+..+.. +++|++|++++|.+.+..+..+..+++|+ +|++++|.+.+
T Consensus 265 ~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 265 NDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred cccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 333332 56666666666655544433333333333 33333333333
Q ss_pred cCcccccCCCCCCEEEccCCcCCCCCCCC--C--------------------cccccccCCCCCcEEEccCCcceecCC-
Q 042446 291 KFSVNFGGMKNLSHLILQSSNLGSGESDE--M--------------------GFINSLANCSKLRVLSFGRNQFRGVLP- 347 (445)
Q Consensus 291 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~--------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~- 347 (445)
..+..+..+++|++|++++|.+....... + -.+..+..+++|+.|++++|.+.+.++
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 33333333344444443333211000000 0 001122333444444444444433332
Q ss_pred hhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcce--ecCChhhhCCCCCCeEEccCCcccccccccccC
Q 042446 348 HSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI--GTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGN 425 (445)
Q Consensus 348 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 425 (445)
..+..+. +|++|++++|.+++..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..+..+.+
T Consensus 424 ~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 424 QEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp GGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 2222222 4444444444443333334444444444444444443 234556666677777777777776555556667
Q ss_pred CCCCCeEEccCCccee
Q 042446 426 LSSLSEIVLSNNNLSG 441 (445)
Q Consensus 426 l~~L~~l~l~~n~~~~ 441 (445)
+++|++|++++|++++
T Consensus 503 l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 503 LEKLEILDLQHNNLAR 518 (680)
T ss_dssp CTTCCEEECCSSCCGG
T ss_pred ccccCEEeCCCCCccc
Confidence 7777777777777665
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.2e-41 Score=342.21 Aligned_cols=345 Identities=19% Similarity=0.246 Sum_probs=249.1
Q ss_pred ccccccCCCCCCEEECCCCcccc-----------------cCCcccc--CCCCCCEEECCCCcCCCCCCccCcCCCCCCE
Q 042446 75 LSPHIGNLSFLREINLMDNTIQG-----------------EIPPEFG--RLFRLEALFLANNSLVGKIPANLSYCSRLTV 135 (445)
Q Consensus 75 ~~~~l~~l~~L~~L~L~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~ 135 (445)
+|..++++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66677788888888888888876 2777766 8888888888888877778888888888888
Q ss_pred EEccCCc-Ccc-cCCccccCC-------CCCCEEecccccCCCCCCc--cCCCCCCcceEeecccccccccCcccCCCCC
Q 042446 136 LSLGQNK-LVG-SIPFEFVFL-------YKLKGLSLHKNNLTGGISP--FLGNLTFLELVSLSYNSFEGNIPDSLGQLKE 204 (445)
Q Consensus 136 L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 204 (445)
|++++|+ +++ .+|..++++ ++|++|++++|.+. .+|. .+.++++|+.|++++|.+. .+| .++++++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 8888886 665 555544433 37777777777776 5666 6666777777777777666 555 6666666
Q ss_pred CCEEEccCCCCcccCCccCcCCCC-CcEEEccCCcCCCCCCccccc------------------------------CCCC
Q 042446 205 LKSLAIGVNNLSGKIPPSICNLSF-LVNFSVSQNQIHGSLPSCLGL------------------------------NFPN 253 (445)
Q Consensus 205 L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~------------------------------~~~~ 253 (445)
|++|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+.. ..++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 666666666666 56666666666 666666666555 44433221 1235
Q ss_pred ccEEEccCCcCcccCcccC-cCCCCCCEEECccCcCcccCccccc-------CCCCCCEEEccCCcCCCCCCCCCccccc
Q 042446 254 LKFFQIDQNFFTGSIPVSL-SNASKLEVIQIANNSFSGKFSVNFG-------GMKNLSHLILQSSNLGSGESDEMGFINS 325 (445)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 325 (445)
|+.|++++|.+. .+|..+ ..+++|+.|++++|.+.......+. ++++|++|++++|++.. ++..
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-------lp~~ 746 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-------LSDD 746 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-------CCGG
T ss_pred cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-------chHH
Confidence 666666666666 344333 4788999999999998844333333 23499999999999875 3445
Q ss_pred cc--CCCCCcEEEccCCcceecCChhhhhccccCcEEEccc------CcccccCCccccCccCCCeeeCccCcceecCCh
Q 042446 326 LA--NCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGF------NQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQ 397 (445)
Q Consensus 326 l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 397 (445)
+. .+++|+.|++++|.+++ +|..+..++ +|++|++++ |.+.+.+|..+..+++|+.|++++|.+ +.+|.
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 65 89999999999999985 788888877 999999976 777788999999999999999999999 58888
Q ss_pred hhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCC
Q 042446 398 EMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNN 437 (445)
Q Consensus 398 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n 437 (445)
.+. ++|+.|+|++|++....+..+.....+..+.+.+|
T Consensus 824 ~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n 861 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861 (876)
T ss_dssp CCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECC
T ss_pred hhc--CCCCEEECCCCCCCccChHHccccccchheeecCC
Confidence 765 69999999999988665555544333334444433
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.2e-40 Score=321.71 Aligned_cols=355 Identities=20% Similarity=0.209 Sum_probs=256.4
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCC-CCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGK-IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLS 161 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (445)
++|++|++++|.+++..+..++++++|++|++++|.+.+. .+..+.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5677777777777766677777777777777777776533 355677777777777777777766677777777777777
Q ss_pred cccccCCCCCCcc--CCCCCCcceEeecccccccccCcc-cCCCCCCCEEEccCCCCcccCCccCcCC--CCCcEEEccC
Q 042446 162 LHKNNLTGGISPF--LGNLTFLELVSLSYNSFEGNIPDS-LGQLKELKSLAIGVNNLSGKIPPSICNL--SFLVNFSVSQ 236 (445)
Q Consensus 162 l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~ 236 (445)
+++|.+.+..+.. +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+ ..|+.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777776533333 667777777777777777555554 6677777777777777776666666554 5677777777
Q ss_pred CcCCCCCCcccc-------cCCCCccEEEccCCcCcccCcccCcC---CCCCCEEECccCcCcccC----------cccc
Q 042446 237 NQIHGSLPSCLG-------LNFPNLKFFQIDQNFFTGSIPVSLSN---ASKLEVIQIANNSFSGKF----------SVNF 296 (445)
Q Consensus 237 ~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~----------~~~l 296 (445)
|.+.+..+..+. ..+++|++|++++|.+++..+..+.. .++|+.|++++|...+.. ...+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 776632222110 12467888888888777655554432 367778887777543221 1111
Q ss_pred c--CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCcc
Q 042446 297 G--GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG 374 (445)
Q Consensus 297 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 374 (445)
. ..++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+..
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFAL------LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEE------CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGG
T ss_pred ccccccCceEEEecCcccccc------chhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhH
Confidence 1 236888899988888763 344677888899999999888877777777776 8999999999888777778
Q ss_pred ccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 375 IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 375 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888899999999998887778888888999999999999886666677888999999999999888776
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-40 Score=343.12 Aligned_cols=279 Identities=19% Similarity=0.186 Sum_probs=191.5
Q ss_pred CCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccC-CccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEE
Q 042446 58 HRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEI-PPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVL 136 (445)
Q Consensus 58 ~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L 136 (445)
..+++.+++++|.+++..+..+..+++|++|++++|...+.+ +.++.++++|++|++++|.+.+..|..+.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 368889999999998877888999999999999998554444 7788999999999999999987788899999999999
Q ss_pred EccCCcCcccCCcc--ccCCCCCCEEecccccCCCCCC-ccCCCCCCcceEeecccccccccCcccCCC--CCCCEEEcc
Q 042446 137 SLGQNKLVGSIPFE--FVFLYKLKGLSLHKNNLTGGIS-PFLGNLTFLELVSLSYNSFEGNIPDSLGQL--KELKSLAIG 211 (445)
Q Consensus 137 ~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~ 211 (445)
++++|.+.+..|.. +.++++|++|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999888655554 8889999999999998876544 568889999999999888876555555544 555555555
Q ss_pred CCCCcccCCccCcCC-----------------------------------------------------------------
Q 042446 212 VNNLSGKIPPSICNL----------------------------------------------------------------- 226 (445)
Q Consensus 212 ~n~~~~~~~~~l~~l----------------------------------------------------------------- 226 (445)
+|.+.+..+..+..+
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 555544444333333
Q ss_pred ---CCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCC
Q 042446 227 ---SFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303 (445)
Q Consensus 227 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 303 (445)
++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred cccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 3344444444444422223232 255566666666655555555555666666666666665555555566666666
Q ss_pred EEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce
Q 042446 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343 (445)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 343 (445)
+|++++|.+..... ..+..+++|+.|++++|.++
T Consensus 342 ~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 342 YIDLQKNHIAIIQD------QTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EEECCSCCCCCCCS------SCSCSCCCCCEEEEETCCSC
T ss_pred EEECCCCCCCccCh------hhhcCCCCCCEEECCCCCCC
Confidence 66666665544322 24556677777777776654
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.4e-39 Score=326.93 Aligned_cols=377 Identities=22% Similarity=0.191 Sum_probs=281.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
+++++++++++.+.+..|..++++++|++|++++|.++...+.+|+.+++|++|++++|.+.+..|..++++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 56777777777777666666777777777777777776444445777777777777777777555566777777777777
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCC--CCCCcceEeecc----------------------------
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLG--NLTFLELVSLSY---------------------------- 188 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~---------------------------- 188 (445)
++|.+.+..+..+.++++|++|++++|.+.+..+..+. .+++|++|++++
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 208 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC
Confidence 77777666666666677777777776665543332221 234444444444
Q ss_pred -----------------------cccccccCcccCCCC--CCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCC
Q 042446 189 -----------------------NSFEGNIPDSLGQLK--ELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243 (445)
Q Consensus 189 -----------------------~~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 243 (445)
|.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|.+.+..
T Consensus 209 ~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp HHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC
T ss_pred hhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC
Confidence 444444444555553 4999999999998778888999999999999999876433
Q ss_pred Cccc--------------------------------ccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcC---
Q 042446 244 PSCL--------------------------------GLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF--- 288 (445)
Q Consensus 244 ~~~~--------------------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--- 288 (445)
+..+ ...+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh
Confidence 3221 22367888888888988887788899999999999987642
Q ss_pred -------------------------cccCcccccCCCCCCEEEccCCcCCCCCCCCCccc-ccccCCCCCcEEEccCCcc
Q 042446 289 -------------------------SGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFI-NSLANCSKLRVLSFGRNQF 342 (445)
Q Consensus 289 -------------------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~ 342 (445)
.+..+..+..+++|++|++++|.+.. .++ ..+.++++|++|++++|++
T Consensus 369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ------ELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE------ECCSGGGTTCTTCCEEECCSCSE
T ss_pred hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc------ccCcccccCcccccEEecCCCCc
Confidence 22334456677888888888887754 122 4678899999999999999
Q ss_pred eecCChhhhhccccCcEEEcccCccc--ccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccccc
Q 042446 343 RGVLPHSITNLSSQLQVLFLGFNQLY--GSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP 420 (445)
Q Consensus 343 ~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 420 (445)
.+..+..+...+ +|++|++++|.++ +..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+
T Consensus 443 ~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 521 (680)
T 1ziw_A 443 LQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521 (680)
T ss_dssp EECCTTTTTTCT-TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGS
T ss_pred ceeChhhhhcCc-ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccch
Confidence 877777777776 9999999999876 4678889999999999999999997777789999999999999999985422
Q ss_pred --------ccccCCCCCCeEEccCCcceec
Q 042446 421 --------STLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 421 --------~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
..+.++++|++|++++|++++.
T Consensus 522 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 522 HANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp TTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred hhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 2378899999999999999853
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=320.13 Aligned_cols=366 Identities=23% Similarity=0.236 Sum_probs=276.6
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.++++++.+.+..+..+..+++|++|++++|.+++..|..++++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57888888888888766677888888888888888888777788888888888888888888 45555 7888888888
Q ss_pred cCCcCcc-cCCccccCCCCCCEEecccccCCCCCCccCCCCCCc--ceEeeccccc--ccccCcccCCCC----------
Q 042446 139 GQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL--ELVSLSYNSF--EGNIPDSLGQLK---------- 203 (445)
Q Consensus 139 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~~l~---------- 203 (445)
++|.+.+ ..|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 8888875 367788888888888888888764 334556666 7777777776 434444433321
Q ss_pred -------------------------------------------------------------------------CCCEEEc
Q 042446 204 -------------------------------------------------------------------------ELKSLAI 210 (445)
Q Consensus 204 -------------------------------------------------------------------------~L~~L~l 210 (445)
+|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 4445555
Q ss_pred cCCCCcccCCccC-----cCCCCCcEEEccCCcCCCCCC-ccccc--CCCCccEEEccCCcCcccCcccCcCCCCCCEEE
Q 042446 211 GVNNLSGKIPPSI-----CNLSFLVNFSVSQNQIHGSLP-SCLGL--NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQ 282 (445)
Q Consensus 211 ~~n~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~-~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 282 (445)
++|.+.+.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..++|+.|++++|.+.+.. ....+++|++|+
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 5555554555555 5555555555555554 333 11111 0145777777777765321 126889999999
Q ss_pred CccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEc
Q 042446 283 IANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFL 362 (445)
Q Consensus 283 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 362 (445)
+++|.+++..+..+..+++|++|++++|++.... .++..+..+++|++|++++|.+.+.+|.......++|++|++
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELS----KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH----HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccc----cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 9999999888889999999999999999987532 244568899999999999999986566653333349999999
Q ss_pred ccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccc-cccCCCCCCeEEccCCccee
Q 042446 363 GFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPS-TLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~l~l~~n~~~~ 441 (445)
++|.+++..|..+. ++|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|. .+..+++|++|++++|++.+
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 99999877666554 79999999999998 88888889999999999999999 5665 48999999999999999876
Q ss_pred c
Q 042446 442 V 442 (445)
Q Consensus 442 ~ 442 (445)
.
T Consensus 483 ~ 483 (520)
T 2z7x_B 483 S 483 (520)
T ss_dssp C
T ss_pred c
Confidence 4
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-39 Score=333.88 Aligned_cols=384 Identities=20% Similarity=0.205 Sum_probs=272.5
Q ss_pred CcEEEEEcCCCCCcccc-cccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCcc--CcCCCCCCE
Q 042446 59 RRVIALDLMSKALSGSL-SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPAN--LSYCSRLTV 135 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~--l~~l~~L~~ 135 (445)
.+++.++++++...+.+ +..+.++++|++|+|++|.+.+..|..++++++|++|++++|.+.+..|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 67888888888655555 667888888888888888888777888888888888888888887655544 788888888
Q ss_pred EEccCCcCcccCC-ccccCCCCCCEEecccccCCCCCCccCCCC--CC------------------------------cc
Q 042446 136 LSLGQNKLVGSIP-FEFVFLYKLKGLSLHKNNLTGGISPFLGNL--TF------------------------------LE 182 (445)
Q Consensus 136 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~--~~------------------------------L~ 182 (445)
|++++|.+.+..+ ..|+++++|++|++++|.+.+..+..+..+ ++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 8888888875543 467888888888888887765444333222 22 66
Q ss_pred eEeecccccccccCcccC------------------------------------C--CCCCCEEEccCCCCcccCCccCc
Q 042446 183 LVSLSYNSFEGNIPDSLG------------------------------------Q--LKELKSLAIGVNNLSGKIPPSIC 224 (445)
Q Consensus 183 ~L~l~~~~~~~~~~~~l~------------------------------------~--l~~L~~L~l~~n~~~~~~~~~l~ 224 (445)
.|++++|.+.+..+..+. . .++|++|++++|.+.+..+..+.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 666666644332222111 1 25678888888888777777888
Q ss_pred CCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCE
Q 042446 225 NLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSH 304 (445)
Q Consensus 225 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 304 (445)
.+++|+.|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred cCCCCCEEECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 8888888888888887555555544 888888888888888777778888888888888888887777777888888888
Q ss_pred EEccCCcCCCCCCCC----------------------------------CcccccccCCCCCcEEEccCCcceecCChhh
Q 042446 305 LILQSSNLGSGESDE----------------------------------MGFINSLANCSKLRVLSFGRNQFRGVLPHSI 350 (445)
Q Consensus 305 L~l~~~~~~~~~~~~----------------------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 350 (445)
|++++|.+....... .+....+..+++|+.|++++|.+++..+...
T Consensus 367 L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp EEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred EECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 888888776532100 0001112356777777777777664332222
Q ss_pred hhccccCcEEEcccCcccc-----cCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccC
Q 042446 351 TNLSSQLQVLFLGFNQLYG-----SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGN 425 (445)
Q Consensus 351 ~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 425 (445)
....++|++|++++|.++. ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|++++..+..+.
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~- 525 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP- 525 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-
T ss_pred cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-
Confidence 2222377777777777652 2334566778888888888888877777788888888888888888865555554
Q ss_pred CCCCCeEEccCCcceecCCC
Q 042446 426 LSSLSEIVLSNNNLSGVIPS 445 (445)
Q Consensus 426 l~~L~~l~l~~n~~~~~~p~ 445 (445)
++|+.|++++|++++.+|.
T Consensus 526 -~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 526 -ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp -SCCCEEEEEEECCCCCCSC
T ss_pred -ccccEEECCCCcCCCCChh
Confidence 7888888888888887663
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=316.88 Aligned_cols=368 Identities=19% Similarity=0.195 Sum_probs=274.5
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
++-++..++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 444555554 3554443 5799999999999988888999999999999999999987788899999999999999999
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccccccc-ccCcccCCCCCCCEEEccCCCCcccCCcc
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEG-NIPDSLGQLKELKSLAIGVNNLSGKIPPS 222 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 222 (445)
.+..|..|.++++|++|++++|.+....+..+.++++|++|++++|.+.. .+|..++++++|++|++++|.+.+..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 97777899999999999999999987666578999999999999999886 46889999999999999999887555554
Q ss_pred CcCCCCC----cEEEccCCcCCCCCC------------------------------------------------------
Q 042446 223 ICNLSFL----VNFSVSQNQIHGSLP------------------------------------------------------ 244 (445)
Q Consensus 223 l~~l~~L----~~L~l~~~~~~~~~~------------------------------------------------------ 244 (445)
+..+++| ..+++++|.+.+..+
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 248 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence 5444444 445554443321111
Q ss_pred ---------------------------cccccCCCCccEEEccCCcCcccCcccCc------------------------
Q 042446 245 ---------------------------SCLGLNFPNLKFFQIDQNFFTGSIPVSLS------------------------ 273 (445)
Q Consensus 245 ---------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~------------------------ 273 (445)
..+. .+++|++|++++|.+. .+|..+.
T Consensus 249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~ 326 (570)
T 2z63_A 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326 (570)
T ss_dssp TTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSS
T ss_pred hhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccc
Confidence 1111 1344555555554443 2333332
Q ss_pred ------------------CCCCCCEEECccCcCcccC--cccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCc
Q 042446 274 ------------------NASKLEVIQIANNSFSGKF--SVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLR 333 (445)
Q Consensus 274 ------------------~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 333 (445)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+.. ++..+..+++|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~l~~L~ 399 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------MSSNFLGLEQLE 399 (570)
T ss_dssp CCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-------EEEEEETCTTCC
T ss_pred cCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-------ccccccccCCCC
Confidence 3344555555555444322 3344455555555555555433 233467788888
Q ss_pred EEEccCCcceecCC-hhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcce-ecCChhhhCCCCCCeEEcc
Q 042446 334 VLSFGRNQFRGVLP-HSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI-GTIPQEMGKLLNLQGLDFG 411 (445)
Q Consensus 334 ~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~ 411 (445)
+|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|+++
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred EEEccCCccccccchhhhhcCC-CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 88888888876555 3344555 8999999999988778888888999999999999887 4688889999999999999
Q ss_pred CCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 412 GNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 412 ~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
+|++++..|..+..+++|++|++++|++++.+|
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 999998888899999999999999999988765
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.6e-38 Score=313.89 Aligned_cols=367 Identities=24% Similarity=0.214 Sum_probs=238.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.+++++|.+++..+..+..+++|++|++++|.+++..++++.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 34555555555555444455555555666666665555555555555556666666655555 34433 4555666666
Q ss_pred cCCcCccc-CCccccCCCCCCEEecccccCCCCCCccCCCCCCc--ceEeeccccc--ccccCcccCC------------
Q 042446 139 GQNKLVGS-IPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL--ELVSLSYNSF--EGNIPDSLGQ------------ 201 (445)
Q Consensus 139 ~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~~------------ 201 (445)
++|.+.+. .|..|+++++|++|++++|.+.... +..+++| ++|++++|.+ .+..+..+..
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 65555531 2345555556666666555554322 2223333 5555555554 3222222222
Q ss_pred --------------CCCCCEEEccCCCC----------------------------cc----cCCccCcCCCCCcEEEcc
Q 042446 202 --------------LKELKSLAIGVNNL----------------------------SG----KIPPSICNLSFLVNFSVS 235 (445)
Q Consensus 202 --------------l~~L~~L~l~~n~~----------------------------~~----~~~~~l~~l~~L~~L~l~ 235 (445)
+++|+.+++++|.. .+ ..+.. ...++|++|+++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~ 284 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIY 284 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEe
Confidence 12222222222210 00 00000 011256667777
Q ss_pred CCcCCCCCCccccc----C--------------------------CCCccEEEccCCcCcccCcccCcCCCCCCEEECcc
Q 042446 236 QNQIHGSLPSCLGL----N--------------------------FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIAN 285 (445)
Q Consensus 236 ~~~~~~~~~~~~~~----~--------------------------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 285 (445)
+|.+.+.+|..+.. . .++|++|++++|.+.... ....+++|++|++++
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCC
Confidence 77666666654411 0 145777777777765321 126789999999999
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccC
Q 042446 286 NSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFN 365 (445)
Q Consensus 286 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 365 (445)
|.+++..+..+..+++|++|++++|++.... .++..+..+++|++|++++|.+++.+|.......++|++|++++|
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFF----KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTT----HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcc----cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 9999888889999999999999999987643 344567899999999999999987566654433349999999999
Q ss_pred cccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccccccc-ccCCCCCCeEEccCCcceec
Q 042446 366 QLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPST-LGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 366 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~l~l~~n~~~~~ 442 (445)
.+++..|..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+.
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 99876665544 79999999999988 78887779999999999999999 56655 89999999999999998864
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.3e-39 Score=296.84 Aligned_cols=292 Identities=24% Similarity=0.442 Sum_probs=235.6
Q ss_pred cChhhHHHHHHHHHhccCCCCCCCCCCCCCCCCcc--eeeeEeCCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCE
Q 042446 14 FEEGDRAALQAFKSMIAHDPQRILNSWNDSRHFCE--WDGVTCGRRH--RRVIALDLMSKALSG--SLSPHIGNLSFLRE 87 (445)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~w~~~~~~c~--~~~~~~~~~~--~~v~~l~l~~~~~~~--~~~~~l~~l~~L~~ 87 (445)
+.+.+.+|+.+|++++. +|. .+..|..+.++|. |.||.|.... .+|+.++++++.+.+ .+|..+..+++|++
T Consensus 3 c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp SCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 45678899999999985 666 7889988889998 9999998754 789999999999998 88999999999999
Q ss_pred EECCC-CcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccccc
Q 042446 88 INLMD-NTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNN 166 (445)
Q Consensus 88 L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (445)
|++++ +.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 88888899999999999999999999988889999999999999999999988888889999999999999999
Q ss_pred CCCCCCccCCCCC-CcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc
Q 042446 167 LTGGISPFLGNLT-FLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245 (445)
Q Consensus 167 ~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 245 (445)
+.+.+|..+..++ +|++|++++|.+.+..|..+..+. |++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 8878888888887 889999998888888888888776 88888888888877777788888888888888877644443
Q ss_pred ccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCc
Q 042446 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSN 311 (445)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 311 (445)
+. .+++|++|++++|.+++.+|..+..+++|++|++++|.+++..+.. ..+++|+.+++++|.
T Consensus 240 -~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 -VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp -CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred -cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 22 2566666666666666666666666666666666666665544433 444555555555543
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=311.67 Aligned_cols=360 Identities=19% Similarity=0.231 Sum_probs=278.1
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCC
Q 042446 62 IALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQN 141 (445)
Q Consensus 62 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~ 141 (445)
++++++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 36899999998 5777665 89999999999999777789999999999999999999877899999999999999999
Q ss_pred cCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCCCCCC--CEEEccCCCC--c
Q 042446 142 KLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKEL--KSLAIGVNNL--S 216 (445)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~n~~--~ 216 (445)
.++ .+|.. .+++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56655 89999999999999987 467899999999999999999885 456667777 9999999988 5
Q ss_pred ccCCccCcCC--------------------------CCCcEEEccCCc-------CCCCCCccccc--------------
Q 042446 217 GKIPPSICNL--------------------------SFLVNFSVSQNQ-------IHGSLPSCLGL-------------- 249 (445)
Q Consensus 217 ~~~~~~l~~l--------------------------~~L~~L~l~~~~-------~~~~~~~~~~~-------------- 249 (445)
+..|..+..+ ++|+.+++++|. +.+.++ .+..
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 5566555542 333333333332 000000 0000
Q ss_pred ------------CCCCccEEEccCCcCcccCcccC-----cCCCC--------------------------CCEEECccC
Q 042446 250 ------------NFPNLKFFQIDQNFFTGSIPVSL-----SNASK--------------------------LEVIQIANN 286 (445)
Q Consensus 250 ------------~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~--------------------------L~~L~l~~~ 286 (445)
..++|++|++++|.+.+.+|..+ .++++ |+.|++++|
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 02356666666666655555555 44544 455555555
Q ss_pred cCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCccee--cCChhhhhccccCcEEEccc
Q 042446 287 SFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG--VLPHSITNLSSQLQVLFLGF 364 (445)
Q Consensus 287 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~ 364 (445)
.+.... .+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+++ .+|..+..++ +|++|++++
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~ 383 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTD------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQ 383 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCT------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCS
T ss_pred cccccc--chhhCCcccEEEeECCccCh------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCC
Confidence 443221 12678999999999999877 345567889999999999999985 4556667776 999999999
Q ss_pred CcccccCCcc-ccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecC
Q 042446 365 NQLYGSIPSG-IGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVI 443 (445)
Q Consensus 365 ~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~ 443 (445)
|.+++.+|.. +..+++|+.|++++|.+.+..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l 459 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-V 459 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-c
Confidence 9998646654 77889999999999999877776664 79999999999999 888877899999999999999986 4
Q ss_pred C
Q 042446 444 P 444 (445)
Q Consensus 444 p 444 (445)
|
T Consensus 460 ~ 460 (520)
T 2z7x_B 460 P 460 (520)
T ss_dssp C
T ss_pred C
Confidence 4
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.8e-38 Score=311.08 Aligned_cols=376 Identities=18% Similarity=0.173 Sum_probs=242.2
Q ss_pred CcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCc
Q 042446 46 FCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPA 125 (445)
Q Consensus 46 ~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~ 125 (445)
.|.|.++ | +.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c----------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-C----------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-E----------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-E----------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 3777665 5 44455665 4565553 7899999999999988888999999999999999999988888
Q ss_pred cCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccC-cccCCCC
Q 042446 126 NLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIP-DSLGQLK 203 (445)
Q Consensus 126 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~ 203 (445)
.+.++++|++|++++|.+.+..+..++++++|++|++++|.+.+ ..+..+.++++|++|++++|...+.++ ..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 99999999999999999997667679999999999999999886 356788999999999999998443444 6899999
Q ss_pred CCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC--c-ccC--------
Q 042446 204 ELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI--P-VSL-------- 272 (445)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~-~~l-------- 272 (445)
+|++|++++|.+.+..|..+..+++|++|+++.|.+. .++..+...+++|++|++++|.+.+.. + ...
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 9999999999999888888877666666666555543 333333223444444444444443210 0 000
Q ss_pred --------------------cC----------------------------------------------------------
Q 042446 273 --------------------SN---------------------------------------------------------- 274 (445)
Q Consensus 273 --------------------~~---------------------------------------------------------- 274 (445)
..
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 00
Q ss_pred -CCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCC--hhhh
Q 042446 275 -ASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLP--HSIT 351 (445)
Q Consensus 275 -~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~ 351 (445)
.++|++|++++|.+.......+..+++|++|++++|.+.+... .....+..+++|++|++++|.+++..+ ..+.
T Consensus 308 ~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 384 (549)
T 2z81_A 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL---KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384 (549)
T ss_dssp HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHH---HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred hcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccc---cchhhhhccccCcEEEccCCcccccccchhhhh
Confidence 0122233333332221111111235555555555555433100 001123444555555555555542211 1223
Q ss_pred hccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChh------------------hhCCCCCCeEEccCC
Q 042446 352 NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE------------------MGKLLNLQGLDFGGN 413 (445)
Q Consensus 352 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~------------------~~~~~~L~~L~l~~n 413 (445)
.++ +|++|++++|+++ .+|..+..+++|+.|++++|.+. .++.. ...+++|+.|++++|
T Consensus 385 ~l~-~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 385 TLK-NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN 461 (549)
T ss_dssp GCT-TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred cCC-CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCC
Confidence 333 5555555555554 34444444445555555554443 11111 136788888888888
Q ss_pred cccccccccccCCCCCCeEEccCCcceecCC
Q 042446 414 HFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 414 ~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
+++ .+|. ...+++|++|++++|++++.+|
T Consensus 462 ~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 462 KLK-TLPD-ASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CCS-SCCC-GGGCTTCCEEECCSSCCCCCCT
T ss_pred ccC-cCCC-cccCccCCEEecCCCccCCcCH
Confidence 888 6665 4568899999999999988765
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.3e-37 Score=297.44 Aligned_cols=354 Identities=17% Similarity=0.176 Sum_probs=295.4
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCccc-CCccccCCCCCCEEeccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGS-IPFEFVFLYKLKGLSLHK 164 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~ 164 (445)
+.++.+++.++ .+|. -.++|++|++++|.+.+..|..+.++++|++|++++|.+.+. .+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 35666666665 5554 237899999999999988899999999999999999988644 466799999999999999
Q ss_pred ccCCCCCCccCCCCCCcceEeecccccccccCcc--cCCCCCCCEEEccCCCCcccCCcc-CcCCCCCcEEEccCCcCCC
Q 042446 165 NNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDS--LGQLKELKSLAIGVNNLSGKIPPS-ICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 165 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~~~~~~ 241 (445)
|.+.+..+..+.++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9999888899999999999999999998644444 899999999999999999776765 7899999999999999987
Q ss_pred CCCccccc-CCCCccEEEccCCcCcccCccc--------CcCCCCCCEEECccCcCcccCcccccC---CCCCCEEEccC
Q 042446 242 SLPSCLGL-NFPNLKFFQIDQNFFTGSIPVS--------LSNASKLEVIQIANNSFSGKFSVNFGG---MKNLSHLILQS 309 (445)
Q Consensus 242 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~ 309 (445)
..+..+.. ..++|+.+++++|.+.+..+.. +..+++|++|++++|.+.+..+..+.. .++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 66666543 1378999999999988644433 346789999999999998776666544 38999999999
Q ss_pred CcCCCCCCCCCccc----ccc--cCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCe
Q 042446 310 SNLGSGESDEMGFI----NSL--ANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYL 383 (445)
Q Consensus 310 ~~~~~~~~~~~~~~----~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 383 (445)
+...........+. ..+ ..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCE
Confidence 87654322111110 111 1347899999999999988888888877 9999999999999888889999999999
Q ss_pred eeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 384 LAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 384 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
|++++|.+.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 9999999998788999999999999999999998889999999999999999999998544
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.4e-36 Score=289.50 Aligned_cols=344 Identities=27% Similarity=0.394 Sum_probs=290.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.+++.++++++.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 578899999998874 44 48889999999999999984 444 8999999999999999985444 899999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+. +. +..+++|++|++++|.+.+. + .+..+++|++|++. +.+... ..+.++++|++|++++|.+.+
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~- 191 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSD- 191 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCC-
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCC-
Confidence 99999844 43 89999999999999998853 3 48899999999996 444422 348899999999999999873
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
+ ..+..+++|++|++++|.+.+..+ +.. +++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..
T Consensus 192 ~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 I-SVLAKLTNLESLIATNNQISDITP--LGI-LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C-hhhccCCCCCEEEecCCccccccc--ccc-cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 3 457889999999999999885544 333 89999999999998853 467889999999999999976554 889
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+++|++|++++|.+.... .+..+++|+.|++++|++.+..+ +..++ +|++|++++|++++..| +..+
T Consensus 264 l~~L~~L~l~~n~l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS--------PLAGLTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp CTTCSEEECCSSCCCCCG--------GGTTCTTCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGC
T ss_pred CCCCCEEECCCCccCccc--------cccCCCccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccC
Confidence 999999999999987632 27789999999999999985433 55555 99999999999986544 7789
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
++|+.|++++|.+.+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999999998853 468899999999999999997776 8899999999999999998
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8e-36 Score=301.87 Aligned_cols=142 Identities=24% Similarity=0.192 Sum_probs=125.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..++++++++|.+++..+..+.++++|++|+|++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47899999999999777778999999999999999999777888999999999999999999766678999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccC
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLG 200 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 200 (445)
++|.+++..+..|+++++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 9999986666779999999999999999875 4677888999999999999988765554443
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5e-36 Score=298.47 Aligned_cols=358 Identities=18% Similarity=0.225 Sum_probs=281.7
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCC
Q 042446 62 IALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQN 141 (445)
Q Consensus 62 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~ 141 (445)
+.++++++.+++ +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999985 776654 89999999999999777789999999999999999999888999999999999999999
Q ss_pred cCcccCCccccCCCCCCEEecccccCCC-CCCccCCCCCCcceEeecccccccccCcccCCCCCC--CEEEccCCCC--c
Q 042446 142 KLVGSIPFEFVFLYKLKGLSLHKNNLTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKEL--KSLAIGVNNL--S 216 (445)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~n~~--~ 216 (445)
.++ .+|.. .+++|++|++++|.+.+ ..|..+.++++|++|++++|.+... .+..+++| ++|++++|.+ .
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 56655 89999999999999986 3467899999999999999998853 34455555 9999999988 6
Q ss_pred ccCCccCcCC--------------------------CCCcEEEccCCcC----------------------------CC-
Q 042446 217 GKIPPSICNL--------------------------SFLVNFSVSQNQI----------------------------HG- 241 (445)
Q Consensus 217 ~~~~~~l~~l--------------------------~~L~~L~l~~~~~----------------------------~~- 241 (445)
+..+..+..+ ++|+.+++++|.. .+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 5666555543 3455555554420 00
Q ss_pred ---CCCcccccCCCCccEEEccCCcCcccCcccC-----cCC--------------------------CCCCEEECccCc
Q 042446 242 ---SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSL-----SNA--------------------------SKLEVIQIANNS 287 (445)
Q Consensus 242 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~~~ 287 (445)
.++... ..++|++|++++|.+.+.+|..+ .++ .+|++|++++|.
T Consensus 265 ~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 265 CSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 000001 13478899999998887777665 333 346666666666
Q ss_pred CcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCccee--cCChhhhhccccCcEEEcccC
Q 042446 288 FSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG--VLPHSITNLSSQLQVLFLGFN 365 (445)
Q Consensus 288 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 365 (445)
+.... ....+++|++|++++|.+.+ ..+..+..+++|++|++++|++++ .+|..+..++ +|++|++++|
T Consensus 343 ~~~~~--~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N 413 (562)
T 3a79_B 343 FIHMV--CPPSPSSFTFLNFTQNVFTD------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLN 413 (562)
T ss_dssp CCCCC--CCSSCCCCCEEECCSSCCCT------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTS
T ss_pred ccccc--CccCCCCceEEECCCCcccc------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCC
Confidence 54221 12678999999999999877 345577899999999999999985 2234456666 9999999999
Q ss_pred cccccCCc-cccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceec
Q 042446 366 QLYGSIPS-GIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGV 442 (445)
Q Consensus 366 ~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~ 442 (445)
.+++.+|. .+..+++|+.|++++|.+.+..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCC
Confidence 99874555 477889999999999999876666553 79999999999999 7787777999999999999999963
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-35 Score=280.39 Aligned_cols=351 Identities=16% Similarity=0.167 Sum_probs=249.3
Q ss_pred CCCCCCCCCCcc-eeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECC
Q 042446 37 LNSWNDSRHFCE-WDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLA 115 (445)
Q Consensus 37 ~~~w~~~~~~c~-~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 115 (445)
++.|....+||. |.+..|.....+ ++...... .....-..++++++|+++++.++...+..+..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~---i~~~~~~~--~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVH---IDMQTQDV--YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEEESCE---ECSSCCCC--EESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccceeeee---eecccccc--cccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 457877766665 444444221111 12212111 111222346889999999999985555567899999999999
Q ss_pred CCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccccccccc
Q 042446 116 NNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNI 195 (445)
Q Consensus 116 ~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 195 (445)
+|.+.+..+..+..+++|++|++++|.+.+..|..++++++|++|++++|.+....+..+.++++|++|++++|.+.+..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99999777778999999999999999999777778899999999999999998555555688999999999999998777
Q ss_pred CcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCC
Q 042446 196 PDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNA 275 (445)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 275 (445)
+..+.++++|++|++++|.+++. .+..+++|+.+++++|.+.+ + . ..+.|++|++++|.+... +. ...
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-~----~-~~~~L~~L~l~~n~l~~~-~~--~~~ 225 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-L----A-IPIAVEELDASHNSINVV-RG--PVN 225 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-E----E-CCSSCSEEECCSSCCCEE-EC--CCC
T ss_pred hhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-c----C-CCCcceEEECCCCeeeec-cc--ccc
Confidence 77888999999999999988743 34567888888888887652 1 1 256788888888887743 22 224
Q ss_pred CCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccc
Q 042446 276 SKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSS 355 (445)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 355 (445)
++|++|++++|.+++. ..+..+++|++|++++|.+... .+..+..+++|++|++++|++++ ++.....++
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~- 295 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI------MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP- 295 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE------ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT-
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc------ChhHccccccCCEEECCCCcCcc-cCcccCCCC-
Confidence 6788888888877643 4667778888888888777652 34456777778888888777763 343334444
Q ss_pred cCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 356 QLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 356 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
+|++|++++|.++ .+|..+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|++...
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccch
Confidence 7777777777776 456666677777777777777763 33 55667777777777777643
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=288.56 Aligned_cols=321 Identities=20% Similarity=0.177 Sum_probs=265.0
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
+.+++++..++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 57888888887 666644 368999999999999877889999999999999999999778889999999999999999
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 245 (445)
.+....+..+.++++|++|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+. .++.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccCh
Confidence 998766667889999999999999999888888999999999999999998778888999999999999999887 4444
Q ss_pred ccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccc
Q 042446 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINS 325 (445)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 325 (445)
.....+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+.......+|++|++++|.+.... ...
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~ 243 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP------YLA 243 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC------HHH
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC------HHH
Confidence 43344889999999999988777778888999999999988766565555555668888888888876532 235
Q ss_pred ccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCC
Q 042446 326 LANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNL 405 (445)
Q Consensus 326 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 405 (445)
+..+++|+.|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCT-TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred hcCccccCeeECCCCcCCccChhhccccc-cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 67788888888888888766665566665 78888888888887777788888888888888888876555667778888
Q ss_pred CeEEccCCcccc
Q 042446 406 QGLDFGGNHFSG 417 (445)
Q Consensus 406 ~~L~l~~n~i~~ 417 (445)
+.|++++|++..
T Consensus 323 ~~L~l~~N~l~c 334 (477)
T 2id5_A 323 ETLILDSNPLAC 334 (477)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEccCCCccC
Confidence 888888888763
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-35 Score=291.77 Aligned_cols=354 Identities=16% Similarity=0.178 Sum_probs=250.6
Q ss_pred CCCCCCCCCCCCCCCCcc----eeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCC
Q 042446 31 HDPQRILNSWNDSRHFCE----WDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRL 106 (445)
Q Consensus 31 ~~~~~~~~~w~~~~~~c~----~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 106 (445)
++.+...+.|..+..||. |..+.|.. .++....... ....-..+.+++.++++++.+....+..+..+
T Consensus 3 g~~~~~l~~~~~~~~C~~~~~~~~c~~~~~------~i~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l 74 (597)
T 3oja_B 3 GQQRYNVKPRQPEYKCIDSNLQYDCVFYDV------HIDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74 (597)
T ss_dssp --------CCCSEECCCCC--CCSEEECSC------EECSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHC
T ss_pred CcccccccCCCCCCcCcccCcCceeEecCc------eecccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccC
Confidence 455666788988877774 54444421 1222222111 11112246789999999999986666668889
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEee
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 186 (445)
++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..|+.+++|++|++++|.+....+..+..+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 99999999999999877889999999999999999999777778899999999999999998666666788999999999
Q ss_pred cccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc
Q 042446 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
++|.+.+..+..+.++++|++|++++|.+.+. .+..+++|+.+++++|.+.+ + . .+++|+.|++++|.+..
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-l----~-~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-L----A-IPIAVEELDASHNSINV 225 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-E----E-CCTTCSEEECCSSCCCE
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-c----c-CCchhheeeccCCcccc
Confidence 99999877777889999999999999988743 24567888888888886652 1 1 25678888888887764
Q ss_pred cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC
Q 042446 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346 (445)
Q Consensus 267 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 346 (445)
..+ .+ .++|+.|++++|.+++. ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+++ +
T Consensus 226 ~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~-l 293 (597)
T 3oja_B 226 VRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNRLVA-L 293 (597)
T ss_dssp EEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECTTSCCCE-E
T ss_pred ccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCC------CCHHHhcCccCCCEEECCCCCCCC-C
Confidence 322 22 25788888888877643 556777777777777777765 234456677777777777777764 3
Q ss_pred ChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 347 PHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 347 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
|..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|++.+.
T Consensus 294 ~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 294 NLYGQPIP-TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECSSSCCT-TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred CcccccCC-CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCCh
Confidence 44444444 7777777777776 466666667777777777777663 22 45566777777777776543
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.6e-35 Score=284.76 Aligned_cols=347 Identities=18% Similarity=0.144 Sum_probs=289.0
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+
T Consensus 16 v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 16 VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 445555554 4555443 6899999999999988888999999999999999999988899999999999999999999
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccC
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSI 223 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 223 (445)
....+..|.++++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 86666678999999999999999998888889999999999999999998888899999999999999999986656678
Q ss_pred cCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCC
Q 042446 224 CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303 (445)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 303 (445)
..+++|+.|++++|.+.+..+..+. .+++|++|++++|...+.++.......+|++|++++|.+++.....+..+++|+
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred cccCCCcEEeCCCCcCcEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence 8999999999999998854444444 499999999999988777777777777999999999999877667889999999
Q ss_pred EEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCe
Q 042446 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYL 383 (445)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 383 (445)
+|++++|.+.... ...+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++|+.
T Consensus 252 ~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 252 FLNLSYNPISTIE------GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN-YLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp EEECCSSCCCEEC------TTSCTTCTTCCEEECCSSCCSEECTTTBTTCT-TCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred eeECCCCcCCccC------hhhccccccCCEEECCCCccceECHHHhcCcc-cCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 9999999987643 23578899999999999999988788888777 9999999999999766667889999999
Q ss_pred eeCccCcceecCC-hhhhCCCCCCeEEccCCcccccccccc
Q 042446 384 LAMEQNQFIGTIP-QEMGKLLNLQGLDFGGNHFSGKIPSTL 423 (445)
Q Consensus 384 L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~l 423 (445)
|++++|++...-. .++. .....+.+.++...-..|..+
T Consensus 325 L~l~~N~l~c~c~~~~~~--~~~~~~~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 325 LILDSNPLACDCRLLWVF--RRRWRLNFNRQQPTCATPEFV 363 (477)
T ss_dssp EECCSSCEECSGGGHHHH--TTTTSSCCTTCCCBEEESGGG
T ss_pred EEccCCCccCccchHhHH--hhhhccccCccCceeCCchHH
Confidence 9999999874322 2221 223344555554443334433
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.2e-34 Score=276.24 Aligned_cols=328 Identities=27% Similarity=0.394 Sum_probs=275.0
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKG 159 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (445)
..+++++.|++.++.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34678999999999987 455 478899999999999999854 44 8999999999999999984443 899999999
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcC
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 239 (445)
|++++|.+.+.. . +..+++|++|++++|.+.. + ..+.++++|++|+++ +.+. .. ..+..+++|+.|++++|.+
T Consensus 117 L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~-~~~~-~~-~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDID-P-LKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFG-NQVT-DL-KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEE-ESCC-CC-GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCh-H-HcCCCCCCEEECCCCccCC-C-hhhccCCcccEeecC-Cccc-Cc-hhhccCCCCCEEECcCCcC
Confidence 999999988543 3 8899999999999999884 3 358899999999997 4444 22 3488999999999999998
Q ss_pred CCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCC
Q 042446 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDE 319 (445)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 319 (445)
. .++. +. .+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+....
T Consensus 190 ~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--- 259 (466)
T 1o6v_A 190 S-DISV-LA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--- 259 (466)
T ss_dssp C-CCGG-GG-GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG---
T ss_pred C-CChh-hc-cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch---
Confidence 7 3433 44 38999999999999986544 77799999999999998754 46788999999999999987632
Q ss_pred CcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhh
Q 042446 320 MGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEM 399 (445)
Q Consensus 320 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 399 (445)
.+..+++|++|++++|.+++..+ +..++ +|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +
T Consensus 260 -----~~~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~ 327 (466)
T 1o6v_A 260 -----PLSGLTKLTELKLGANQISNISP--LAGLT-ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V 327 (466)
T ss_dssp -----GGTTCTTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G
T ss_pred -----hhhcCCCCCEEECCCCccCcccc--ccCCC-ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h
Confidence 27889999999999999985433 55555 99999999999985433 7889999999999999986555 7
Q ss_pred hCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCC
Q 042446 400 GKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 400 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
..+++|+.|++++|++++. ..+..+++|++|++++|++++..|
T Consensus 328 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 7899999999999999854 468899999999999999998765
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.6e-34 Score=275.51 Aligned_cols=341 Identities=18% Similarity=0.203 Sum_probs=255.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.++++++.+++. | .+..+++|++|++++|.+++ ++ ++.+++|++|++++|.+++ ++ ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 6789999999999864 4 68899999999999999985 33 8899999999999999985 34 889999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+ ++ ++.+++|++|++++|.+.+. .+..+++|++|++++|...+.+ .+..+++|++|++++|.+++
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 9999985 44 88999999999999999864 2788999999999999655444 47889999999999999984
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
++ +..+++|+.|++++|.+.+. + +. .+++|++|++++|.+++ +| +..+++|++|++++|.+++.. +..
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~-~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL-D--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC-C--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred ec--cccCCCCCEEECcCCcCCee-c--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 55 78889999999999998753 2 33 48999999999999986 45 888999999999999998654 456
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcc--cccccCCCCCcEEEccCCcceecCChh--------hhhccccCcEEEcccCccc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGF--INSLANCSKLRVLSFGRNQFRGVLPHS--------ITNLSSQLQVLFLGFNQLY 368 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~ 368 (445)
+++|+.|+++.+.+.......-.. ......+++|+.|++++|...+.+|.. +...+ +|++|++++|+++
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~-~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNP-KLVYLYLNNTELT 331 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCT-TCCEEECTTCCCS
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcc-cCCEEECCCCccc
Confidence 777777777776655433221110 011356788888888888765554432 12222 5666666666666
Q ss_pred ccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcceecCCC
Q 042446 369 GSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSGVIPS 445 (445)
Q Consensus 369 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~~~p~ 445 (445)
+ + .+..+++|+.|++++|++.+ ++.|..|++++|.+.+. ..+..|+.+++++|+++|.+|+
T Consensus 332 ~-l--~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 332 E-L--DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp C-C--CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred c-c--ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 4 2 25566666666666666552 23444455555555533 2345677888899999988874
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.9e-33 Score=261.77 Aligned_cols=307 Identities=26% Similarity=0.353 Sum_probs=192.0
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 79 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.. ++ .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 345677777777777776 333 36677777777777777763 333 6777777777777776653 32 466677777
Q ss_pred EEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCc
Q 042446 159 GLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 159 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 238 (445)
+|++++|.+.+.. . +..+++|++|++++|..... ...+..+++|++|++++|.+.+. +. +..
T Consensus 114 ~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~------------- 175 (347)
T 4fmz_A 114 ELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDV-TP-IAN------------- 175 (347)
T ss_dssp EEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCC-GG-GGG-------------
T ss_pred EEECcCCcccCch-h-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCc-hh-hcc-------------
Confidence 7777776665322 2 55566666666666543322 22355555555555555554421 11 334
Q ss_pred CCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCC
Q 042446 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318 (445)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 318 (445)
+++|++|++++|.+.+..+ +..+++|+++++++|.+.+..+ +..+++|++|++++|.+....
T Consensus 176 ------------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-- 237 (347)
T 4fmz_A 176 ------------LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-- 237 (347)
T ss_dssp ------------CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--
T ss_pred ------------CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc--
Confidence 4455555555555443211 4555666666666665553332 555666666666666654421
Q ss_pred CCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChh
Q 042446 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE 398 (445)
Q Consensus 319 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 398 (445)
.+..+++|++|++++|.+++ + ..+..++ +|++|++++|.+++ + ..+..+++|+.|++++|.+.+..+..
T Consensus 238 ------~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~-~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 238 ------PLANLSQLTWLEIGTNQISD-I-NAVKDLT-KLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp ------GGTTCTTCCEEECCSSCCCC-C-GGGTTCT-TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred ------chhcCCCCCEEECCCCccCC-C-hhHhcCC-CcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 15566677777777776653 2 2344444 78888888887764 2 34677888888888888888777788
Q ss_pred hhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcce
Q 042446 399 MGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 399 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
+..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888888888886555 777888889988888875
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.9e-33 Score=260.17 Aligned_cols=303 Identities=28% Similarity=0.394 Sum_probs=209.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.++++++.+.. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ ++ .+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence 789999999999874 33 4888999999999999998 4444 8999999999999999984 44 6899999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+ .+. +..+++|++|++++|......+ .+..+++|++|++++|.+....+ +..+++|++|++++|.+. .
T Consensus 118 ~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~ 191 (347)
T 4fmz_A 118 NEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-D 191 (347)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-C
T ss_pred cCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-c
Confidence 9999984 443 8899999999999997664444 48899999999999999874332 888999999999999987 3
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
++. +..+++|+.+++++|.+.+..+ +. .+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..
T Consensus 192 ~~~-~~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 192 ISP-LASLTSLHYFTAYVNQITDITP--VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc-ccCCCccceeecccCCCCCCch--hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 333 6777888888888877763222 22 26666666666666653222 55566666666666655432 23444
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+++|++|++++|.+... ..+..++ +|++|++++|.+++..+..+..+
T Consensus 264 l~~L~~L~l~~n~l~~~--------~~~~~l~-------------------------~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--------SVLNNLS-------------------------QLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp CTTCCEEECCSSCCCCC--------GGGGGCT-------------------------TCSEEECCSSCCCGGGHHHHHTC
T ss_pred CCCcCEEEccCCccCCC--------hhhcCCC-------------------------CCCEEECcCCcCCCcChhHhhcc
Confidence 55555555555544331 1233334 55555555555554444555555
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
++|+.|++++|.+.+..| +..+++|+.|++++|+++
T Consensus 311 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 666666666666553333 555666666666666554
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-33 Score=265.25 Aligned_cols=310 Identities=19% Similarity=0.191 Sum_probs=267.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.+++.++++++.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 67888999999887544445788999999999999999777789999999999999999999888888999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.+++++|.+.+
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-
Confidence 99999844444578999999999999999987788899999999999999998853 36678999999999998873
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
+...+.|+.|++++|.+. .++... .++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..
T Consensus 201 ----~~~~~~L~~L~l~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp ----EECCSSCSEEECCSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ----cCCCCcceEEECCCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 334568999999999887 444332 67999999999999863 57889999999999999999888899999
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+++|++|++++|++.. ++.....+++|++|++++|.++ .+|..+..++ +|++|++++|+++. ++ +..+
T Consensus 271 l~~L~~L~L~~n~l~~-------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~L~L~~N~i~~-~~--~~~~ 338 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIVT-LK--LSTH 338 (390)
T ss_dssp CSSCCEEECCSSCCCE-------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCCCC-CC--CCTT
T ss_pred cccCCEEECCCCcCcc-------cCcccCCCCCCCEEECCCCcce-ecCccccccC-cCCEEECCCCccce-eC--chhh
Confidence 9999999999999876 3334577899999999999998 6777777776 99999999999984 33 6778
Q ss_pred cCCCeeeCccCcceec
Q 042446 379 VNLYLLAMEQNQFIGT 394 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~ 394 (445)
++|+.|++++|++...
T Consensus 339 ~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCCSEEECCSSCEEHH
T ss_pred ccCCEEEcCCCCccch
Confidence 9999999999998743
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-33 Score=272.14 Aligned_cols=343 Identities=24% Similarity=0.284 Sum_probs=173.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCC-------------CEEECCCCcCCCCCCc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRL-------------EALFLANNSLVGKIPA 125 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~i~~~~p~ 125 (445)
.+++.++++++.+ +.+|..++++++|++|++++|.+.+.+|.+++.+.+| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4566677777777 5667677777777777777766666666666555432 555555555552 232
Q ss_pred cCcCCCCCCEEEccCCcCcccCCccc----------------cCC-CCCCEEecccccCCCCCCccCCCCCCcceEeecc
Q 042446 126 NLSYCSRLTVLSLGQNKLVGSIPFEF----------------VFL-YKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSY 188 (445)
Q Consensus 126 ~l~~l~~L~~L~l~~~~~~~~~~~~~----------------~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (445)
. .++|++|++++|.+++ +|..+ ... ++|++|++++|.+.+ +| .+.++++|++|++++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred C---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 1 1344444444444442 22211 011 456666666666653 44 366666666666666
Q ss_pred cccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC
Q 042446 189 NSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI 268 (445)
Q Consensus 189 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 268 (445)
|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|+.|++++|.+.+ +|.. .++|++|++++|.+. .+
T Consensus 163 N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 163 NSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-EL 230 (454)
T ss_dssp SCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SC
T ss_pred CcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-cc
Confidence 66653 33322 366666666666663 44 46666677777777766652 3322 346777777777666 34
Q ss_pred cccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCccee--cC
Q 042446 269 PVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG--VL 346 (445)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~ 346 (445)
| .+..+++|++|++++|.+.+. +. .+++|++|++++|.+...+. ..++|++|++++|.+++ .+
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l~~----------~~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLPE----------LPQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSEESCC
T ss_pred c-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccccCc----------ccCcCCEEECcCCccCcccCc
Confidence 4 366777777777777766542 21 23566666666666554221 11344455555444443 11
Q ss_pred Chh-------------hhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCC
Q 042446 347 PHS-------------ITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGN 413 (445)
Q Consensus 347 ~~~-------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 413 (445)
|.. +...+++|++|++++|++++ +|.. +++|+.|++++|.+. .+|. .+++|+.|++++|
T Consensus 296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence 110 11222367777777777764 4433 477888888888877 5665 4678888888888
Q ss_pred cccc--cccccccCC-------------CCCCeEEccCCccee--cCC
Q 042446 414 HFSG--KIPSTLGNL-------------SSLSEIVLSNNNLSG--VIP 444 (445)
Q Consensus 414 ~i~~--~~~~~l~~l-------------~~L~~l~l~~n~~~~--~~p 444 (445)
++++ .+|..+..+ ++|++|++++|++++ .+|
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 8887 577777666 788888888888887 566
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.1e-32 Score=261.94 Aligned_cols=302 Identities=18% Similarity=0.197 Sum_probs=223.3
Q ss_pred cccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccC
Q 042446 74 SLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVF 153 (445)
Q Consensus 74 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 153 (445)
..+..++.+++|++|+++++.+++ +| .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++. + ++.
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 334567789999999999999985 45 68999999999999999995 44 88999999999999999853 3 889
Q ss_pred CCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEE
Q 042446 154 LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFS 233 (445)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 233 (445)
+++|++|++++|.+.+. + +..+++|++|++++|.+++ + .++++++|++|++++|...+.+ .+..+++|+.|+
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 99999999999999863 3 8899999999999999986 3 3888999999999999654454 477899999999
Q ss_pred ccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCC
Q 042446 234 VSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLG 313 (445)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 313 (445)
+++|.+.+ ++ +. .+++|+.|++++|.+++. .+..+++|++|++++|.+++. + +..+++|++|++++|.+.
T Consensus 177 ls~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 177 CSFNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CCSSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS
T ss_pred CCCCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCC
Confidence 99999984 55 33 489999999999999864 488899999999999999874 3 788999999999999987
Q ss_pred CCCCCCCcccccccCCCCCcEEEccC----------CcceecCChhhhhccccCcEEEcccCcccccCCc--------cc
Q 042446 314 SGESDEMGFINSLANCSKLRVLSFGR----------NQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPS--------GI 375 (445)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~ 375 (445)
... ...+++|+.|+++. |.+.+.+|. ..++ +|++|++++|...+.+|. .+
T Consensus 247 ~~~---------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l~-~L~~L~Ls~n~~l~~l~~~~~~L~~L~l 314 (457)
T 3bz5_A 247 ELD---------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGCR-KIKELDVTHNTQLYLLDCQAAGITELDL 314 (457)
T ss_dssp CCC---------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTCT-TCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred CcC---------HHHCCCCCEEeccCCCCCEEECCCCccCCcccc--cccc-cCCEEECCCCcccceeccCCCcceEech
Confidence 743 23455555555544 433333331 2222 566666666654333322 12
Q ss_pred cCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 376 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
..+++|+.|++++|++++ ++ +..+++|+.|++++|+++
T Consensus 315 ~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred hhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence 333444445554444443 21 444445555555555444
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.6e-32 Score=276.19 Aligned_cols=371 Identities=22% Similarity=0.223 Sum_probs=241.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.+++++|.+++..+.++.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 68999999999998777778999999999999999999777778999999999999999999777778999999999999
Q ss_pred cCCcCcc-cCCccccCCCCCCEEecccccCCCCCCccCCCCCCc----ceEeecccccccccCc----------------
Q 042446 139 GQNKLVG-SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFL----ELVSLSYNSFEGNIPD---------------- 197 (445)
Q Consensus 139 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~~~~~---------------- 197 (445)
++|.+.. ..|..+..+++|++|++++|.+.+..+..+..+.++ ..++++.|.+....+.
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 9999874 357788999999999999998876544433322211 1222332222211000
Q ss_pred -----------------------------------------------------------------ccCCCCCCCEEEccC
Q 042446 198 -----------------------------------------------------------------SLGQLKELKSLAIGV 212 (445)
Q Consensus 198 -----------------------------------------------------------------~l~~l~~L~~L~l~~ 212 (445)
.+....+++.+.+.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 000111122222222
Q ss_pred CCCcccCCccCcCCCCCcEEEccCCcCCC--------------------CCCcccccCCCCccEEEccCCcCcc--cCc-
Q 042446 213 NNLSGKIPPSICNLSFLVNFSVSQNQIHG--------------------SLPSCLGLNFPNLKFFQIDQNFFTG--SIP- 269 (445)
Q Consensus 213 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~--------------------~~~~~~~~~~~~L~~L~l~~~~~~~--~~~- 269 (445)
+.+.. ...+.....++.|++.++.+.+ ..+. .. .+++|+.+++++|.+.. ..+
T Consensus 316 ~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~-~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 316 VTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-EV-DLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp CEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC-CC-BCTTCCEEECCSSCCBEEEECCH
T ss_pred ccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc-cc-cccccccchhhcccccccccccc
Confidence 21110 0111222334444444333221 1111 11 25666666666665532 122
Q ss_pred ----------------------ccCcCCCCCCEEECccCcCccc-CcccccCCCCCCEEEccCCcCCCCCCCCCcccccc
Q 042446 270 ----------------------VSLSNASKLEVIQIANNSFSGK-FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL 326 (445)
Q Consensus 270 ----------------------~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 326 (445)
..+..+++|+.+++..+..... ....+..+++++.++++.|.+... .+..+
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~------~~~~~ 465 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA------FNGIF 465 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC------CTTTT
T ss_pred chhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccc------ccccc
Confidence 2334455555555555543322 223455566666666666665542 23345
Q ss_pred cCCCCCcEEEccCCccee-cCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCC
Q 042446 327 ANCSKLRVLSFGRNQFRG-VLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNL 405 (445)
Q Consensus 327 ~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 405 (445)
..++.|+.|++++|.+.+ ..|..+..+. +|++|++++|++++..|..+..+++|+.|+|++|++.+..+..+..+++|
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~-~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhcc-ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 667788888888876433 3455555555 78888888888887777778888888888888888886667778888888
Q ss_pred CeEEccCCcccccccccccCC-CCCCeEEccCCcce
Q 042446 406 QGLDFGGNHFSGKIPSTLGNL-SSLSEIVLSNNNLS 440 (445)
Q Consensus 406 ~~L~l~~n~i~~~~~~~l~~l-~~L~~l~l~~n~~~ 440 (445)
+.|+|++|++++..|..+.++ ++|+.|++++|++.
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 888888888887777777777 57888888888765
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-32 Score=273.07 Aligned_cols=310 Identities=19% Similarity=0.184 Sum_probs=269.2
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..++.++++++.+....+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..++++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 56788999999887655555788999999999999999888889999999999999999999888888999999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+....+..|+.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-
Confidence 99999955555679999999999999999988888899999999999999998853 35678999999999998873
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
+...+.|+.|++++|.+. .++... .++|+.|++++|.+++ +..+..+++|++|++++|.+.+..+..+..
T Consensus 207 ----l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp ----EECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ----ccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 345578999999999886 444332 5789999999999986 467899999999999999999888999999
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+++|+.|++++|.+.. ++.....+++|+.|++++|.++ .+|..+..++ +|++|++++|.+++. + +..+
T Consensus 277 l~~L~~L~Ls~N~l~~-------l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~-~L~~L~L~~N~l~~~-~--~~~~ 344 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIVTL-K--LSTH 344 (597)
T ss_dssp CSSCCEEECTTSCCCE-------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCCCCC-C--CCTT
T ss_pred ccCCCEEECCCCCCCC-------CCcccccCCCCcEEECCCCCCC-ccCcccccCC-CCCEEECCCCCCCCc-C--hhhc
Confidence 9999999999999876 3445577899999999999998 6787787776 999999999999843 3 6678
Q ss_pred cCCCeeeCccCcceec
Q 042446 379 VNLYLLAMEQNQFIGT 394 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~ 394 (445)
++|+.|++++|++...
T Consensus 345 ~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCCSEEECCSSCEEHH
T ss_pred CCCCEEEeeCCCCCCh
Confidence 9999999999998743
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5.2e-33 Score=256.95 Aligned_cols=268 Identities=17% Similarity=0.245 Sum_probs=170.8
Q ss_pred cChhhHHHHHHHHHhccCCCCCCCCCC----CCCCCCcceeeeEeCC--------CCCcEEEEEcCCCCCcccccccccC
Q 042446 14 FEEGDRAALQAFKSMIAHDPQRILNSW----NDSRHFCEWDGVTCGR--------RHRRVIALDLMSKALSGSLSPHIGN 81 (445)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~~~w----~~~~~~c~~~~~~~~~--------~~~~v~~l~l~~~~~~~~~~~~l~~ 81 (445)
....+++++.+|++....|+..+...| ....++|.|.|+.|.. ...+|+.++++++.++ .+|..+.+
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 445788999999999988998888899 5667899999998842 2357777888887776 56777777
Q ss_pred CCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccC--------
Q 042446 82 LSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVF-------- 153 (445)
Q Consensus 82 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-------- 153 (445)
+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|...+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 788888888888777 77777777778888888877777 66777777777888877777666666655443
Q ss_pred -CCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEE
Q 042446 154 -LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNF 232 (445)
Q Consensus 154 -l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 232 (445)
+++|++|++++|.+. .+|..+.++++|++|++++|.+. .++..+.++++|++|++++|.+.+.+|..+..+
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l------ 252 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR------ 252 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC------
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCC------
Confidence 555555555555544 44444444555555555555444 233344444455555555444444444444444
Q ss_pred EccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCc
Q 042446 233 SVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSN 311 (445)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 311 (445)
++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.+.+..+.
T Consensus 253 -------------------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 253 -------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp -------------------CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred -------------------CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 455555555544444445555555555555555555555555555555555555555443
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.2e-31 Score=245.28 Aligned_cols=243 Identities=22% Similarity=0.222 Sum_probs=147.8
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (445)
++++++++++.++ .+|..+ .++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4566666666655 444433 2466666666666665555566666666666666666665555666666666666666
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcc--cCCccCcCCCCCcEEEccCCcCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG--KIPPSICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~~ 241 (445)
+|.+. .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.++. ..+..+..+ +|+.|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 66665 3333332 566677777666664444456667777777777776642 445555555 6777777777665
Q ss_pred CCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCc
Q 042446 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMG 321 (445)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 321 (445)
.+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 186 ~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------- 255 (332)
T 2ft3_A 186 GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR------- 255 (332)
T ss_dssp SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-------
T ss_pred ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-------
Confidence 344433 2566666777766665555666667777777777776665555556666666666666665543
Q ss_pred ccccccCCCCCcEEEccCCccee
Q 042446 322 FINSLANCSKLRVLSFGRNQFRG 344 (445)
Q Consensus 322 ~~~~l~~~~~L~~L~l~~~~~~~ 344 (445)
++..+..+++|++|++++|.+++
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCB
T ss_pred cChhhhcCccCCEEECCCCCCCc
Confidence 23345555666666666665553
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.2e-30 Score=242.13 Aligned_cols=224 Identities=21% Similarity=0.253 Sum_probs=128.0
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (445)
+.+++|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|..+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---------- 120 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---------- 120 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC----------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc----------
Confidence 44555555555555444444555555555555555555444555555555555555555544 2332221
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcc--cCCccCcCCCCCcEEEccCCcCC
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG--KIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|+.|++++|.+.
T Consensus 121 ----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 121 ----------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp ----------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred ----------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 345555555555544333445555566666665555532 34455555666666666666655
Q ss_pred CCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCC
Q 042446 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEM 320 (445)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 320 (445)
.+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 185 -~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------ 254 (330)
T 1xku_A 185 -TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK------ 254 (330)
T ss_dssp -SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS------
T ss_pred -cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc------
Confidence 344333 3567777777777666656667777777777777777766655566666777777777766653
Q ss_pred cccccccCCCCCcEEEccCCccee
Q 042446 321 GFINSLANCSKLRVLSFGRNQFRG 344 (445)
Q Consensus 321 ~~~~~l~~~~~L~~L~l~~~~~~~ 344 (445)
++..+..+++|++|++++|.+++
T Consensus 255 -lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 255 -VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp -CCTTTTTCSSCCEEECCSSCCCC
T ss_pred -CChhhccCCCcCEEECCCCcCCc
Confidence 33345566666666666666653
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.8e-35 Score=287.71 Aligned_cols=379 Identities=18% Similarity=0.158 Sum_probs=283.3
Q ss_pred CcEEEEEcCCCCCccccccc-ccCCCCCCEEECCCCccccc----CCccccCCCCCCEEECCCCcCCCCCCccC-cCCC-
Q 042446 59 RRVIALDLMSKALSGSLSPH-IGNLSFLREINLMDNTIQGE----IPPEFGRLFRLEALFLANNSLVGKIPANL-SYCS- 131 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~-l~~l~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~p~~l-~~l~- 131 (445)
+++++++++++.+++..... +..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999987654333 67889999999999998743 46678889999999999999875333333 2344
Q ss_pred ---CCCEEEccCCcCcc----cCCccccCCCCCCEEecccccCCCCCCcc-----CCCCCCcceEeecccccccc----c
Q 042446 132 ---RLTVLSLGQNKLVG----SIPFEFVFLYKLKGLSLHKNNLTGGISPF-----LGNLTFLELVSLSYNSFEGN----I 195 (445)
Q Consensus 132 ---~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----l~~~~~L~~L~l~~~~~~~~----~ 195 (445)
+|++|++++|.+.. .++..+..+++|++|++++|.++...+.. ....++|++|++++|.++.. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 79999999999884 45778899999999999999876432222 22356899999999988853 3
Q ss_pred CcccCCCCCCCEEEccCCCCcccCCccCc-----CCCCCcEEEccCCcCCCC----CCcccccCCCCccEEEccCCcCcc
Q 042446 196 PDSLGQLKELKSLAIGVNNLSGKIPPSIC-----NLSFLVNFSVSQNQIHGS----LPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+.+. ++..+.. +++|++|++++|.+++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS-KASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh-CCCccEEeccCCcCCh
Confidence 45666789999999999998754444433 356999999999988753 3444544 8999999999998875
Q ss_pred cC-----cccCcCCCCCCEEECccCcCccc----CcccccCCCCCCEEEccCCcCCCCCCCCCccccccc-CCCCCcEEE
Q 042446 267 SI-----PVSLSNASKLEVIQIANNSFSGK----FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLA-NCSKLRVLS 336 (445)
Q Consensus 267 ~~-----~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~ 336 (445)
.. +.....+++|++|++++|.+++. .+..+..+++|++|++++|.+.+.... .+...+. ..++|++|+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR--LLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH--HHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH--HHHHHhccCCccceeeE
Confidence 32 22334689999999999998764 455567799999999999987542111 1122222 236999999
Q ss_pred ccCCcceec----CChhhhhccccCcEEEcccCcccccCCccccC-----ccCCCeeeCccCccee----cCChhhhCCC
Q 042446 337 FGRNQFRGV----LPHSITNLSSQLQVLFLGFNQLYGSIPSGIGN-----LVNLYLLAMEQNQFIG----TIPQEMGKLL 403 (445)
Q Consensus 337 l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~----~~~~~~~~~~ 403 (445)
+++|.+++. ++..+...+ +|++|++++|.+++..+..+.. .++|+.|++++|.+++ .++..+..++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNR-FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCS-SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred cCCCCCchHHHHHHHHHHhhCC-CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 999998765 334444445 8999999999988654444432 6799999999999885 6788888899
Q ss_pred CCCeEEccCCcccccccccc----c-CCCCCCeEEccCCccee
Q 042446 404 NLQGLDFGGNHFSGKIPSTL----G-NLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 404 ~L~~L~l~~n~i~~~~~~~l----~-~l~~L~~l~l~~n~~~~ 441 (445)
+|+.|++++|++++.....+ . ...+|+.|++.++.+..
T Consensus 399 ~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 99999999999886533222 2 24578999888877654
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.5e-30 Score=239.90 Aligned_cols=291 Identities=21% Similarity=0.262 Sum_probs=172.7
Q ss_pred CCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeec
Q 042446 108 RLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLS 187 (445)
Q Consensus 108 ~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 187 (445)
++++++++++.+. .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5677777777766 4555443 567777777777765555566677777777777777665556666666666666666
Q ss_pred ccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCccc
Q 042446 188 YNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGS 267 (445)
Q Consensus 188 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (445)
+|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .+.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~ 162 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-----------------------SGI 162 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-----------------------GGB
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-----------------------cCc
Confidence 66665 3443332 556666666666554444445555555555555554431 012
Q ss_pred CcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCC
Q 042446 268 IPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLP 347 (445)
Q Consensus 268 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 347 (445)
.+..+..+++|++|++++|.+... +..+ .++|++|++++|.+... .+..+..+++|++|++++|.+++..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITKV------DAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCEE------CTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred ChhhccCCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCcc------CHHHhcCCCCCCEEECCCCcCceeCh
Confidence 333444555555555555554432 1111 14555666665555442 12345556666666666666665444
Q ss_pred hhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhC------CCCCCeEEccCCcccc--cc
Q 042446 348 HSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGK------LLNLQGLDFGGNHFSG--KI 419 (445)
Q Consensus 348 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~i~~--~~ 419 (445)
..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+.. .++++.+++++|++.. ..
T Consensus 234 ~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 234 GSLANTP-HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp TTGGGST-TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred hhccCCC-CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence 4555554 6777777777766 56666667777777777777776444444432 3678888888888753 44
Q ss_pred cccccCCCCCCeEEccCCc
Q 042446 420 PSTLGNLSSLSEIVLSNNN 438 (445)
Q Consensus 420 ~~~l~~l~~L~~l~l~~n~ 438 (445)
|..+..+++++.+++++|+
T Consensus 312 ~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGGGTTCCCGGGEEC----
T ss_pred ccccccccceeEEEecccC
Confidence 5677778888888888875
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=4.5e-30 Score=247.43 Aligned_cols=325 Identities=26% Similarity=0.358 Sum_probs=206.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.++++++.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++.+++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 467777777777765 4432 3677778887777763 2221 2578888888888774 66 4777888888888
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+ +|..+ .+|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|... ++|++|++++|.+. .
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-E 229 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-S
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-c
Confidence 8887763 44332 478888888887775 44 47778888888888887763 33322 47888888888777 6
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
+| .+..+++|+.|++++|.+. .+|. .+++|++|++++|.+.+ +|.. .++|++|++++|.+++... -
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~----~ 295 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE----L 295 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC----C
T ss_pred cc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC----c
Confidence 66 3777888888888888776 3443 25678888888888775 4433 3678888888888765321 1
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCC-CCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccC
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANC-SKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGN 377 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 377 (445)
.++|++|++++|.+... ... ++|++|++++|++++ +|.. .++|++|++++|.++ .+|. .
T Consensus 296 ~~~L~~L~l~~N~l~~i-----------~~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~ 355 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSL-----------CDLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---L 355 (454)
T ss_dssp CTTCCEEECCSSCCSEE-----------CCCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---C
T ss_pred CCcCCEEECcCCcCCcc-----------cCCcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---h
Confidence 26788888888877552 122 589999999999984 5543 248999999999998 4666 4
Q ss_pred ccCCCeeeCccCccee--cCChhhhCC-------------CCCCeEEccCCcccc--cccccccCCCCCCeEEccCCcce
Q 042446 378 LVNLYLLAMEQNQFIG--TIPQEMGKL-------------LNLQGLDFGGNHFSG--KIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 378 ~~~L~~L~l~~n~~~~--~~~~~~~~~-------------~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
+++|+.|++++|++.+ .+|..+..+ ++|+.|++++|++++ .+|. +++.|.+.+|.+.
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVV 429 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------------
T ss_pred hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccC
Confidence 7899999999999997 678888777 899999999999986 4443 5677788888887
Q ss_pred ecCC
Q 042446 441 GVIP 444 (445)
Q Consensus 441 ~~~p 444 (445)
+.+|
T Consensus 430 ~~~~ 433 (454)
T 1jl5_A 430 DPYE 433 (454)
T ss_dssp ----
T ss_pred Cccc
Confidence 7654
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=6e-35 Score=284.01 Aligned_cols=356 Identities=19% Similarity=0.146 Sum_probs=184.9
Q ss_pred CCCEEECCCCcccccCCcc-ccCCCCCCEEECCCCcCCC----CCCccCcCCCCCCEEEccCCcCcccCCccc-cCCC--
Q 042446 84 FLREINLMDNTIQGEIPPE-FGRLFRLEALFLANNSLVG----KIPANLSYCSRLTVLSLGQNKLVGSIPFEF-VFLY-- 155 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~-- 155 (445)
+|++|+++++.++...... +..+++|++|++++|.+.+ .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4556666666654332222 4556666666666666552 234445555666666666666553322222 1233
Q ss_pred --CCCEEecccccCCC----CCCccCCCCCCcceEeecccccccccCccc-----CCCCCCCEEEccCCCCccc----CC
Q 042446 156 --KLKGLSLHKNNLTG----GISPFLGNLTFLELVSLSYNSFEGNIPDSL-----GQLKELKSLAIGVNNLSGK----IP 220 (445)
Q Consensus 156 --~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~----~~ 220 (445)
+|++|++++|.++. .++..+..+++|++|++++|.+....+..+ ...++|++|++++|.+++. ++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 46666666666552 234555566666666666666543222211 2234566666666665532 23
Q ss_pred ccCcCCCCCcEEEccCCcCCCCCCcccc----cCCCCccEEEccCCcCccc----CcccCcCCCCCCEEECccCcCcccC
Q 042446 221 PSICNLSFLVNFSVSQNQIHGSLPSCLG----LNFPNLKFFQIDQNFFTGS----IPVSLSNASKLEVIQIANNSFSGKF 292 (445)
Q Consensus 221 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~ 292 (445)
..+..+++|++|++++|.+.+..+..+. ...++|++|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 3344456666666666655432222221 1234666666666665542 2444555666666666666654432
Q ss_pred c-----ccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc----cccCcEEEcc
Q 042446 293 S-----VNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL----SSQLQVLFLG 363 (445)
Q Consensus 293 ~-----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~ 363 (445)
. ..+..+++|++|++++|.++..... .++..+..+++|++|++++|.+.+..+..+... .++|++|+++
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCG--DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHH--HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 1 1122456666666666655442110 133344556666666666666554333333322 1256666666
Q ss_pred cCccccc----CCccccCccCCCeeeCccCcceecCChhhhC-----CCCCCeEEccCCcccc----cccccccCCCCCC
Q 042446 364 FNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGTIPQEMGK-----LLNLQGLDFGGNHFSG----KIPSTLGNLSSLS 430 (445)
Q Consensus 364 ~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~i~~----~~~~~l~~l~~L~ 430 (445)
+|.+++. ++..+..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.+++ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 6666543 2334445566666666666655433333321 4566666666666654 4555555566666
Q ss_pred eEEccCCccee
Q 042446 431 EIVLSNNNLSG 441 (445)
Q Consensus 431 ~l~l~~n~~~~ 441 (445)
+|++++|++++
T Consensus 402 ~L~l~~N~i~~ 412 (461)
T 1z7x_W 402 ELDLSNNCLGD 412 (461)
T ss_dssp EEECCSSSCCH
T ss_pred EEECCCCCCCH
Confidence 66666666543
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=8.2e-32 Score=247.51 Aligned_cols=252 Identities=28% Similarity=0.414 Sum_probs=157.1
Q ss_pred CcceEeeccccccc--ccCcccCCCCCCCEEEccC-CCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccE
Q 042446 180 FLELVSLSYNSFEG--NIPDSLGQLKELKSLAIGV-NNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKF 256 (445)
Q Consensus 180 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 256 (445)
+++.|+++++.+.+ .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+.. +++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCE
Confidence 34444444444443 3444444444444444442 4444444444444455555555555444444444433 455555
Q ss_pred EEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCC-CCCEEEccCCcCCCCCCCCCcccccccCCCCCcEE
Q 042446 257 FQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMK-NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVL 335 (445)
Q Consensus 257 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 335 (445)
|++++|.+.+..|..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+.. .++..+..++ |++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~------~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG------KIPPTFANLN-LAFV 202 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE------ECCGGGGGCC-CSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec------cCChHHhCCc-ccEE
Confidence 55555555545555555556666666666666555555555555 66666666665543 2333444454 7777
Q ss_pred EccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcc
Q 042446 336 SFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHF 415 (445)
Q Consensus 336 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i 415 (445)
++++|.+++..+..+..++ +|++|++++|.+++..+. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp ECCSSEEEECCGGGCCTTS-CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred ECcCCcccCcCCHHHhcCC-CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 7777777766666666665 788888888877754444 66778888888888888888888888888888888888888
Q ss_pred cccccccccCCCCCCeEEccCCc-ceec
Q 042446 416 SGKIPSTLGNLSSLSEIVLSNNN-LSGV 442 (445)
Q Consensus 416 ~~~~~~~l~~l~~L~~l~l~~n~-~~~~ 442 (445)
++.+|.. ..+++|+.+++++|+ ++|.
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred cccCCCC-ccccccChHHhcCCCCccCC
Confidence 8777775 778888888888888 6654
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.3e-30 Score=240.28 Aligned_cols=288 Identities=22% Similarity=0.276 Sum_probs=168.0
Q ss_pred CCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeec
Q 042446 108 RLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLS 187 (445)
Q Consensus 108 ~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 187 (445)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666665 4454432 466666666666654445555666666666666665554445555555555555555
Q ss_pred ccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc-
Q 042446 188 YNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG- 266 (445)
Q Consensus 188 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 266 (445)
+|.+. .+|..+. ++|++|++++|.+.+..+..+.. +++|++|++++|.++.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~-------------------------l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSG-------------------------LRNMNCIEMGGNPLENS 162 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSS-------------------------CSSCCEEECCSCCCBGG
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCC-------------------------CccCCEEECCCCccccC
Confidence 55554 3333322 44555555555544333333444 4455555555554432
Q ss_pred -cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceec
Q 042446 267 -SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGV 345 (445)
Q Consensus 267 -~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 345 (445)
..+..+..+ +|++|++++|.+++. +..+. ++|++|++++|.+.... +..+..+++|++|++++|.+.+.
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~------~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIE------LEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCC------TTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CCCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccC------HHHhcCCCCCCEEECCCCcCCcC
Confidence 334444444 666666666665532 22222 56666666666665532 23456667777777777777655
Q ss_pred CChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhC------CCCCCeEEccCCccc--c
Q 042446 346 LPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGK------LLNLQGLDFGGNHFS--G 417 (445)
Q Consensus 346 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~i~--~ 417 (445)
.+..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|++. +
T Consensus 233 ~~~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 233 ENGSLSFLP-TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CTTGGGGCT-TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred ChhHhhCCC-CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 555555555 7777777777776 56667777777888888877777544444443 356888888888876 4
Q ss_pred cccccccCCCCCCeEEccCCc
Q 042446 418 KIPSTLGNLSSLSEIVLSNNN 438 (445)
Q Consensus 418 ~~~~~l~~l~~L~~l~l~~n~ 438 (445)
..+..+..+++|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 566778888888888888875
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.8e-29 Score=231.37 Aligned_cols=286 Identities=18% Similarity=0.179 Sum_probs=215.6
Q ss_pred CCCCCCCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCc
Q 042446 39 SWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNS 118 (445)
Q Consensus 39 ~w~~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 118 (445)
.|......|.|.++ | +.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 22 ~~~~~~~~C~~~~~-c----------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-C----------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-E----------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-e----------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 45666677777654 3 44566665 4565544 589999999999997767789999999999999999
Q ss_pred CCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCC-ccCCCCCCcceEeeccc-ccccccC
Q 042446 119 LVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGIS-PFLGNLTFLELVSLSYN-SFEGNIP 196 (445)
Q Consensus 119 i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~-~~~~~~~ 196 (445)
+++..|..+.++++|++|++++|.+++..+..+.++++|++|++++|.+..... ..+..+++|++|++++| .+....+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 998778889999999999999999985444558999999999999999885444 47889999999999998 4665667
Q ss_pred cccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccC---c
Q 042446 197 DSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSL---S 273 (445)
Q Consensus 197 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~ 273 (445)
..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..+...+++|++|++++|.+++..+..+ .
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 78999999999999999999888899999999999999999885 6666555558899999999998886444333 3
Q ss_pred CCCCCCEEECccCcCccc----CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceec
Q 042446 274 NASKLEVIQIANNSFSGK----FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGV 345 (445)
Q Consensus 274 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 345 (445)
..+.++.+++.++.+.+. .+..+..+++|++|++++|++...+.. .+..+++|++|++++|.+.+.
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~------~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG------IFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSSCBCCC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH------HHhcCCCCCEEEeeCCCccCc
Confidence 456677777777766542 344556677777777777766543211 235666677777777666543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.8e-28 Score=222.82 Aligned_cols=253 Identities=22% Similarity=0.261 Sum_probs=157.8
Q ss_pred CCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCC--
Q 042446 45 HFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGK-- 122 (445)
Q Consensus 45 ~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-- 122 (445)
..|.|.++.|.. +.++ .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.+...
T Consensus 5 C~C~~~~l~c~~------------~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 69 (306)
T 2z66_A 5 CSCSGTEIRCNS------------KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69 (306)
T ss_dssp CEEETTEEECCS------------SCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred CeeCCCEEEcCC------------CCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence 446776666644 3343 344333 26788999999888844444578888999999988887732
Q ss_pred CCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCC-ccCCCCCCcceEeecccccccccCcccCC
Q 042446 123 IPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGIS-PFLGNLTFLELVSLSYNSFEGNIPDSLGQ 201 (445)
Q Consensus 123 ~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 201 (445)
.+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 70 ~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp EEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred cccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence 2556667888888888888877 566667788888888888887765443 45667777777777777776666666666
Q ss_pred CCCCCEEEccCCCCcc-cCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCE
Q 042446 202 LKELKSLAIGVNNLSG-KIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEV 280 (445)
Q Consensus 202 l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (445)
+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+. +..+..+..+++|++
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------------~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-------------------------QLSPTAFNSLSSLQV 203 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-------------------------EECTTTTTTCTTCCE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC-------------------------CcCHHHhcCCCCCCE
Confidence 7777777777776654 34555555555555555555554 333444444455555
Q ss_pred EECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCC-CCCcEEEccCCccee
Q 042446 281 IQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANC-SKLRVLSFGRNQFRG 344 (445)
Q Consensus 281 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 344 (445)
|++++|.+.+..+..+..+++|++|++++|.+... .+..+..+ ++|++|++++|.+..
T Consensus 204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS------KKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC------SSSSCCCCCTTCCEEECTTCCEEC
T ss_pred EECCCCccCccChhhccCcccCCEeECCCCCCccc------CHHHHHhhhccCCEEEccCCCeec
Confidence 55555555444444445555555555555555442 12233344 256666666665543
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.4e-28 Score=225.83 Aligned_cols=277 Identities=19% Similarity=0.205 Sum_probs=139.2
Q ss_pred CCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEE
Q 042446 130 CSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLA 209 (445)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 209 (445)
|+.....+.+++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344445566666555 4444333 3566666666666544444555666666666666666554455555666666666
Q ss_pred ccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc-ccccCCCCccEEEccCCc-CcccCcccCcCCCCCCEEECccCc
Q 042446 210 IGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS-CLGLNFPNLKFFQIDQNF-FTGSIPVSLSNASKLEVIQIANNS 287 (445)
Q Consensus 210 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~ 287 (445)
+++|.+++..+..+..+++|++|++++|.+. .++. .....+++|++|++++|. +.+..+..+..+++|++|++++|.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 6666555322223455555555555555554 3333 222225555555555542 333333444445555555555555
Q ss_pred CcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcc
Q 042446 288 FSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQL 367 (445)
Q Consensus 288 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 367 (445)
+.+..+..+..+ ++|++|++++|.+. .++..+....++|++|++++|.+
T Consensus 186 l~~~~~~~l~~l------------------------------~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 186 LQSYEPKSLKSI------------------------------QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp CCEECTTTTTTC------------------------------SEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBC
T ss_pred cCccCHHHHhcc------------------------------ccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcc
Confidence 444444444444 44555555554443 22322222222555555555555
Q ss_pred cccCCccc---cCccCCCeeeCccCccee----cCChhhhCCCCCCeEEccCCccccccccc-ccCCCCCCeEEccCCcc
Q 042446 368 YGSIPSGI---GNLVNLYLLAMEQNQFIG----TIPQEMGKLLNLQGLDFGGNHFSGKIPST-LGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 368 ~~~~~~~~---~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~l~l~~n~~ 439 (445)
++..+..+ .....++.++++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. +.++++|++|++++|++
T Consensus 235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 43222221 123344555555544432 34555566666666666666666 34433 45666666666666666
Q ss_pred eec
Q 042446 440 SGV 442 (445)
Q Consensus 440 ~~~ 442 (445)
.+.
T Consensus 314 ~~~ 316 (353)
T 2z80_A 314 DCS 316 (353)
T ss_dssp CCC
T ss_pred cCc
Confidence 554
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.6e-27 Score=217.23 Aligned_cols=281 Identities=18% Similarity=0.175 Sum_probs=186.3
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCccc--CCccccCCCCCCEEecc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGS--IPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~ 163 (445)
+.++++++.++ .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666665 444433 25677777777777643334456677777777777766522 13444455666666666
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCC-ccCcCCCCCcEEEccCCcCCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIP-PSICNLSFLVNFSVSQNQIHGS 242 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~ 242 (445)
+|.+. .++..+..+++| ++|++++|.+.+..+ ..+..+++|+.|++++|.+.+.
T Consensus 87 ~n~i~-~l~~~~~~l~~L------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQL------------------------EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp SCSEE-EEEEEEETCTTC------------------------CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCccc-cChhhcCCCCCC------------------------CEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 65544 233334444444 444444444442222 3444555555555555555433
Q ss_pred CCcccccCCCCccEEEccCCcCcc-cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCc
Q 042446 243 LPSCLGLNFPNLKFFQIDQNFFTG-SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMG 321 (445)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 321 (445)
.+..+.. +++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.....
T Consensus 142 ~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---- 216 (306)
T 2z66_A 142 FNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT---- 216 (306)
T ss_dssp STTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS----
T ss_pred chhhccc-CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh----
Confidence 3333333 6667777777777665 467788899999999999999998888899999999999999999877432
Q ss_pred ccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccC--CccccCccCCCeeeCccCcceecCChhh
Q 042446 322 FINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSI--PSGIGNLVNLYLLAMEQNQFIGTIPQEM 399 (445)
Q Consensus 322 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 399 (445)
..+..+++|++|++++|.+++..+..+...+++|++|++++|++++.- ......+...+.+.+..+.+....|..+
T Consensus 217 --~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 217 --FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp --GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred --hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 256789999999999999998888888887668999999999997532 1223344556666777777766667766
Q ss_pred hC
Q 042446 400 GK 401 (445)
Q Consensus 400 ~~ 401 (445)
.+
T Consensus 295 ~g 296 (306)
T 2z66_A 295 QG 296 (306)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.8e-27 Score=218.54 Aligned_cols=236 Identities=17% Similarity=0.216 Sum_probs=198.2
Q ss_pred CCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 042446 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGL 160 (445)
Q Consensus 81 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (445)
...++++|+++++.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 78888888999999999999998 78888899999999999999888 778888899999999
Q ss_pred ecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 161 SLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 161 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
++++|...+.+|..+.. . .....+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 99998777777765432 0 12233556778888888888877 77777888888888888888887
Q ss_pred CCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCC
Q 042446 241 GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEM 320 (445)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 320 (445)
.++..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 220 -~l~~~l~~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~------ 291 (328)
T 4fcg_A 220 -ALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS------ 291 (328)
T ss_dssp -CCCGGGGG-CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC------
T ss_pred -cCchhhcc-CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh------
Confidence 46665554 8889999999988888889999999999999999999988899899999999999999999877
Q ss_pred cccccccCCCCCcEEEccCCcce
Q 042446 321 GFINSLANCSKLRVLSFGRNQFR 343 (445)
Q Consensus 321 ~~~~~l~~~~~L~~L~l~~~~~~ 343 (445)
.+|..+..+++|+.+.+..+.+.
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGGGSC
T ss_pred hccHHHhhccCceEEeCCHHHHH
Confidence 67889999999999999987654
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=8.9e-31 Score=262.68 Aligned_cols=327 Identities=14% Similarity=0.100 Sum_probs=157.3
Q ss_pred CCCCCCEEECCCCcCCCC----CCccCcCCCCCCEEEccCCcCc----ccCCccccCCCCCCEEecccccCCCCCCccCC
Q 042446 105 RLFRLEALFLANNSLVGK----IPANLSYCSRLTVLSLGQNKLV----GSIPFEFVFLYKLKGLSLHKNNLTGGISPFLG 176 (445)
Q Consensus 105 ~~~~L~~L~l~~~~i~~~----~p~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 176 (445)
.+++|++|++++|.+.+. ++..+..+++|++|++++|.+. ..++..+.++++|++|++++|.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 445555555555544432 1112234455555555555443 1122223445555555555554442 333444
Q ss_pred CCCCcceEeecccccc---cccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCC
Q 042446 177 NLTFLELVSLSYNSFE---GNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPN 253 (445)
Q Consensus 177 ~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 253 (445)
.+++|++|+++..... ...+..+..+++|+.++++++... .++..+..+++|++|++++|.+.+.....+...+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 4455555555432111 112233444455555555443222 344444555566666666655432222222233556
Q ss_pred ccEEEccCCcCcc-cCcccCcCCCCCCEEECcc-----------CcCcccCccc-ccCCCCCCEEEccCCcCCCCCCCCC
Q 042446 254 LKFFQIDQNFFTG-SIPVSLSNASKLEVIQIAN-----------NSFSGKFSVN-FGGMKNLSHLILQSSNLGSGESDEM 320 (445)
Q Consensus 254 L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~ 320 (445)
|++|++. +.+.+ .++.....+++|++|++++ +.+++..... ...+++|++|+++.+.+++
T Consensus 320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~------ 392 (592)
T 3ogk_B 320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN------ 392 (592)
T ss_dssp CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH------
T ss_pred CCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH------
Confidence 6666655 22221 1222224455566666662 2333222111 2345666666665555443
Q ss_pred ccccccc-CCCCCcEEEcc----CCcceec-----CChhhhhccccCcEEEcccCc--ccccCCccc-cCccCCCeeeCc
Q 042446 321 GFINSLA-NCSKLRVLSFG----RNQFRGV-----LPHSITNLSSQLQVLFLGFNQ--LYGSIPSGI-GNLVNLYLLAME 387 (445)
Q Consensus 321 ~~~~~l~-~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~ 387 (445)
..+..+. .+++|++|+++ .+.+++. ++..+...+ +|++|++++|. +++..+..+ ..+++|+.|+++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 1222232 26666666664 3444432 111122233 66666665443 443333333 236677777777
Q ss_pred cCccee-cCChhhhCCCCCCeEEccCCccccc-ccccccCCCCCCeEEccCCccee
Q 042446 388 QNQFIG-TIPQEMGKLLNLQGLDFGGNHFSGK-IPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 388 ~n~~~~-~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
+|.+++ .++..+..+++|+.|+|++|++++. ++..+..+++|++|++++|+++.
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 777654 2344456677777777777776644 23334567777777777777654
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.8e-26 Score=208.08 Aligned_cols=268 Identities=19% Similarity=0.170 Sum_probs=142.4
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
++++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45666666665 344322 346666666666666554555666666666666666666555555666666666666666
Q ss_pred c-CCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCC
Q 042446 166 N-LTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLP 244 (445)
Q Consensus 166 ~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 244 (445)
. +....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 151 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------- 151 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence 4 44443444555555555555555555444444444555555555555444332233333
Q ss_pred cccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccc
Q 042446 245 SCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFIN 324 (445)
Q Consensus 245 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 324 (445)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+.
T Consensus 152 ------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~ 219 (285)
T 1ozn_A 152 ------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL------PTE 219 (285)
T ss_dssp ------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC------CHH
T ss_pred ------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC------CHH
Confidence 45555555555555544444455666666666666666655556666666666666666665542 122
Q ss_pred cccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccC--ccCCCeeeCccC
Q 042446 325 SLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGN--LVNLYLLAMEQN 389 (445)
Q Consensus 325 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n 389 (445)
.+..+++|+.|++++|.+....+.. .....++.+..+.+.+....|..+.. +..++..++.+|
T Consensus 220 ~~~~l~~L~~L~l~~N~~~c~~~~~--~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWVCDCRAR--PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHTTCTTCCEEECCSSCEECSGGGH--HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HcccCcccCEEeccCCCccCCCCcH--HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 4556666666677666665322211 11112333344455555445554432 334444455444
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.1e-26 Score=210.77 Aligned_cols=223 Identities=20% Similarity=0.192 Sum_probs=170.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCC
Q 042446 62 IALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQN 141 (445)
Q Consensus 62 ~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~ 141 (445)
+.++.+++.++ .+|..+ .++|++|+++++.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777776 455433 578999999999999777788999999999999999999877899999999999999999
Q ss_pred c-CcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCC
Q 042446 142 K-LVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIP 220 (445)
Q Consensus 142 ~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 220 (445)
. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+.++++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 775667889999999999999999998888889999999999999999997666778999999999999999985555
Q ss_pred ccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcC
Q 042446 221 PSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288 (445)
Q Consensus 221 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (445)
..+..+++|+.|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 56767777777777776665333333332 44444444444444433333344444444444444443
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.7e-26 Score=218.45 Aligned_cols=245 Identities=23% Similarity=0.206 Sum_probs=178.9
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus 59 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 444444554 3454443 6788888888888877778888888888888888888877778888888888888888888
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccc-ccccccCcccCCCCCCCEEEccCCCCcccCCcc
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYN-SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPS 222 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 222 (445)
+...+..|..+++|++|++++|.+....+..+.++++|+.|++++| .+....+..+.++++|++|++++|.+. .+| .
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-N 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-c
Confidence 8666666888888888888888887666667788888888888874 344333346777888888888888877 333 4
Q ss_pred CcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCC
Q 042446 223 ICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNL 302 (445)
Q Consensus 223 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 302 (445)
+..+++|+.|++++|.+.+..+..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+++.....+..+++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ccccccccEEECcCCcCcccCcccccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 667777777777777776444544443 7777777777777776666677777777777777777776666666777777
Q ss_pred CEEEccCCcCCC
Q 042446 303 SHLILQSSNLGS 314 (445)
Q Consensus 303 ~~L~l~~~~~~~ 314 (445)
+.|++++|.+..
T Consensus 293 ~~L~L~~Np~~C 304 (452)
T 3zyi_A 293 VELHLHHNPWNC 304 (452)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEccCCCcCC
Confidence 777777776544
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.6e-25 Score=215.76 Aligned_cols=246 Identities=22% Similarity=0.201 Sum_probs=190.7
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 63 ALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 63 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
.++.++..++ .+|..+. ++++.|+|++|.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4555566665 4565554 688999999999997788889999999999999999987777889999999999999999
Q ss_pred CcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccc-cccccCcccCCCCCCCEEEccCCCCcccCCc
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNS-FEGNIPDSLGQLKELKSLAIGVNNLSGKIPP 221 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 221 (445)
++...+..|..+++|++|++++|.+....+..+..+++|++|++++|. +....+..|.++++|++|++++|.++ .+|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-
Confidence 986666678889999999999998887666778888999999998854 44334446788888888888888887 444
Q ss_pred cCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCC
Q 042446 222 SICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKN 301 (445)
Q Consensus 222 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 301 (445)
.+..+++|+.|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred ccCCCcccCEEECCCCccCccChhhhcc-CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 4667778888888888777444444443 777777777777777766777777777777777777777666666777777
Q ss_pred CCEEEccCCcCCC
Q 042446 302 LSHLILQSSNLGS 314 (445)
Q Consensus 302 L~~L~l~~~~~~~ 314 (445)
|+.|++++|.+..
T Consensus 281 L~~L~L~~Np~~C 293 (440)
T 3zyj_A 281 LERIHLHHNPWNC 293 (440)
T ss_dssp CCEEECCSSCEEC
T ss_pred CCEEEcCCCCccC
Confidence 7777777776644
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.6e-25 Score=216.63 Aligned_cols=249 Identities=22% Similarity=0.184 Sum_probs=215.3
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (445)
..+.++.++..++ .+|..+. +++++|++++|.+.+..|..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3568888888887 6666443 689999999999998888999999999999999999998888899999999999999
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCC-CCcccCCccCcCCCCCcEEEccCCcCCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVN-NLSGKIPPSICNLSFLVNFSVSQNQIHGS 242 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 242 (445)
+|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++| .+....+..+..+++|+.|++++|.+. .
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-S
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-c
Confidence 99999777777899999999999999999766678999999999999984 455344456888999999999999987 4
Q ss_pred CCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcc
Q 042446 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGF 322 (445)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 322 (445)
++. +. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|++.....
T Consensus 211 ~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 283 (452)
T 3zyi_A 211 MPN-LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH----- 283 (452)
T ss_dssp CCC-CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-----
T ss_pred ccc-cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-----
Confidence 554 33 48999999999999998888999999999999999999998888889999999999999999887443
Q ss_pred cccccCCCCCcEEEccCCccee
Q 042446 323 INSLANCSKLRVLSFGRNQFRG 344 (445)
Q Consensus 323 ~~~l~~~~~L~~L~l~~~~~~~ 344 (445)
..+..+++|+.|++++|.+..
T Consensus 284 -~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 284 -DLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp -TSSTTCTTCCEEECCSSCEEC
T ss_pred -HHhccccCCCEEEccCCCcCC
Confidence 356778999999999998763
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.3e-26 Score=217.46 Aligned_cols=229 Identities=23% Similarity=0.220 Sum_probs=174.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
..++.++++++.+.+..+..+..+++|++|+|++|.+....+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45677888888887766677888888888888888887666677888888888888888888655667788888888888
Q ss_pred cCCcCcccCCccccCCCCCCEEeccccc-CCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNN-LTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSG 217 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 217 (445)
++|.+....+..|.++++|++|++++|+ +....+..+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 8888876666677888888888888754 33334446777888888888888877 344 46777888888888888887
Q ss_pred cCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcc
Q 042446 218 KIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG 290 (445)
Q Consensus 218 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (445)
..+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 7777888888888888888887744444444 37888888888888886666667778888888888887643
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.8e-29 Score=253.26 Aligned_cols=352 Identities=13% Similarity=0.088 Sum_probs=254.5
Q ss_pred CCCCCCEEECCCCcccccCCccccC-CCC-CCEEECCCCcC-CC-CCCccCcCCCCCCEEEccCCcCccc----CCcccc
Q 042446 81 NLSFLREINLMDNTIQGEIPPEFGR-LFR-LEALFLANNSL-VG-KIPANLSYCSRLTVLSLGQNKLVGS----IPFEFV 152 (445)
Q Consensus 81 ~l~~L~~L~L~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~i-~~-~~p~~l~~l~~L~~L~l~~~~~~~~----~~~~~~ 152 (445)
.+++|++|+|+++.+++..+..+.. ++. |++|++++|.. .. .++.....+++|++|++++|.+.+. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6788999999998887665555555 344 99999988762 11 1222334788999999999987644 223446
Q ss_pred CCCCCCEEecccccCCC----CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc---ccCCccCcC
Q 042446 153 FLYKLKGLSLHKNNLTG----GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS---GKIPPSICN 225 (445)
Q Consensus 153 ~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~ 225 (445)
.+++|++|++++|.+.+ .++..+.++++|++|++++|.+.+ ++..+.++++|++|+++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 78899999999888762 333445678899999999988874 5677888899999999753322 234456677
Q ss_pred CCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCc-ccCcCCCCCCEEECccCcCccc-CcccccCCCCCC
Q 042446 226 LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIP-VSLSNASKLEVIQIANNSFSGK-FSVNFGGMKNLS 303 (445)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~ 303 (445)
+++|+.+.++.+.. +.++..+.. +++|++|++++|.+++... ..+..+++|++|+++ +.+.+. .......+++|+
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~-~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPF-AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGG-GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred cccccccCccccch-hHHHHHHhh-cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 88999999987643 356665554 8999999999999765433 346889999999999 444333 333446789999
Q ss_pred EEEccC-----------CcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcc----cCccc
Q 042446 304 HLILQS-----------SNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG----FNQLY 368 (445)
Q Consensus 304 ~L~l~~-----------~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~~~ 368 (445)
+|++++ +.++.. ++......+++|++|+++.+.+++..+..+....++|++|+++ .+.++
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQR-----GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHH-----HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred EEEeecCccccccccccCccCHH-----HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 999993 333321 2233345689999999998888877777776634499999997 55676
Q ss_pred cc-----CCccccCccCCCeeeCccCc--ceecCChhhh-CCCCCCeEEccCCccccc-ccccccCCCCCCeEEccCCcc
Q 042446 369 GS-----IPSGIGNLVNLYLLAMEQNQ--FIGTIPQEMG-KLLNLQGLDFGGNHFSGK-IPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 369 ~~-----~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~-~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~l~l~~n~~ 439 (445)
+. ++..+..+++|+.|+++.|. +++..+..+. .+++|+.|++++|++++. ++..+..+++|++|++++|++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 42 33346679999999998654 5544444443 589999999999999864 455668899999999999997
Q ss_pred ee
Q 042446 440 SG 441 (445)
Q Consensus 440 ~~ 441 (445)
+.
T Consensus 501 ~~ 502 (592)
T 3ogk_B 501 SE 502 (592)
T ss_dssp BH
T ss_pred cH
Confidence 64
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4.1e-25 Score=219.31 Aligned_cols=268 Identities=26% Similarity=0.284 Sum_probs=217.2
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEee
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSL 186 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 186 (445)
.++++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999999 7777665 89999999999998 5665 5789999999999988 4554 6789999999
Q ss_pred cccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcc
Q 042446 187 SYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTG 266 (445)
Q Consensus 187 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (445)
++|.+.+ ++. .+++|++|++++|.++ .+|.. +++|++|++++|.+. .++. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC
Confidence 9999884 444 5789999999999998 56654 488999999999887 4543 36789999999999885
Q ss_pred cCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC
Q 042446 267 SIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL 346 (445)
Q Consensus 267 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 346 (445)
+| ..+++|+.|++++|.+++... .+++|+.|++++|.+...+ ..+++|+.|++++|.+++ +
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----------~~~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP----------ALPSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC----------CCCTTCCEEECCSSCCSC-C
T ss_pred -Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccC----------CCCCCCCEEEccCCccCc-C
Confidence 44 457899999999999875322 3578999999999887632 124789999999998874 5
Q ss_pred ChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCC
Q 042446 347 PHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNL 426 (445)
Q Consensus 347 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l 426 (445)
| ..+++|++|++++|.++ .+|. .+++|+.|++++|.+. .+|..+..+++|+.|+|++|++++..+..+..+
T Consensus 237 p----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 237 P----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp C----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred C----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 5 22348999999999988 4555 5788999999999988 788889999999999999999988777766543
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.3e-25 Score=217.97 Aligned_cols=269 Identities=24% Similarity=0.269 Sum_probs=222.2
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (445)
..+++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 34899999999998 7777665 89999999999998 5665 5799999999999998 5665 6799999999
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCC
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS 242 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 242 (445)
++|.+.+ ++. .+++|+.|++++|.++. +|.. +++|++|++++|.++ .+|. ..++|+.|++++|.+. .
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~ 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT-S 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-C
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCC-C
Confidence 9999885 443 57899999999999884 5553 489999999999998 4554 3478999999999998 5
Q ss_pred CCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcc
Q 042446 243 LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGF 322 (445)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 322 (445)
+| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++... . .+++|++|++++|.+...+
T Consensus 176 l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~lp------ 237 (622)
T 3g06_A 176 LP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLP------ 237 (622)
T ss_dssp CC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSCCC------
T ss_pred Cc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCcCC------
Confidence 66 337899999999999985 4432 478999999999987433 2 3589999999999887632
Q ss_pred cccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCC
Q 042446 323 INSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKL 402 (445)
Q Consensus 323 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 402 (445)
..+++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+
T Consensus 238 ----~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 238 ----VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ----CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred ----CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 45689999999999998 5665 3348999999999999 788899999999999999999998877766544
Q ss_pred C
Q 042446 403 L 403 (445)
Q Consensus 403 ~ 403 (445)
+
T Consensus 308 ~ 308 (622)
T 3g06_A 308 T 308 (622)
T ss_dssp H
T ss_pred c
Confidence 3
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.2e-28 Score=224.76 Aligned_cols=265 Identities=17% Similarity=0.158 Sum_probs=147.0
Q ss_pred CCCCCCCCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCccc-ccCCcccc-------CCCCC
Q 042446 38 NSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQ-GEIPPEFG-------RLFRL 109 (445)
Q Consensus 38 ~~w~~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~-------~~~~L 109 (445)
+.|.....|+.+..+......++++.++++++.+ .+|..+... |++|+++++.+. ..++..+. ++++|
T Consensus 22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L 97 (312)
T 1wwl_A 22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97 (312)
T ss_dssp CCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCC
T ss_pred cchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCc
Confidence 4555544555554443332234566666666666 455544433 677777777763 34555444 67777
Q ss_pred CEEECCCCcCCCCCCccC--cCCCCCCEEEccCCcCcccCCccccCC-----CCCCEEecccccCCCCCCccCCCCCCcc
Q 042446 110 EALFLANNSLVGKIPANL--SYCSRLTVLSLGQNKLVGSIPFEFVFL-----YKLKGLSLHKNNLTGGISPFLGNLTFLE 182 (445)
Q Consensus 110 ~~L~l~~~~i~~~~p~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 182 (445)
++|++++|.+.+..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 777777777776666665 6777777777777777744 5555555 6777777777777666656666777777
Q ss_pred eEeecccccccc--cCccc--CCCCCCCEEEccCCCCcc--cCC-ccCcCCCCCcEEEccCCcCCCCCCcccccCCCCcc
Q 042446 183 LVSLSYNSFEGN--IPDSL--GQLKELKSLAIGVNNLSG--KIP-PSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255 (445)
Q Consensus 183 ~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 255 (445)
+|++++|.+.+. .+..+ .++++|++|++++|.+++ .++ ..+..+++|+.|++++|.+.+..+......+++|+
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence 777777665432 12222 556666666666666551 111 22234455555555555555433222222244555
Q ss_pred EEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcC
Q 042446 256 FFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNL 312 (445)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 312 (445)
+|++++|.++ .+|..+. ++|++|++++|++++. +. +..+++|++|++++|.+
T Consensus 257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 5555555544 3333333 4455555555544433 22 44444444444444443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.5e-27 Score=217.22 Aligned_cols=243 Identities=19% Similarity=0.171 Sum_probs=139.2
Q ss_pred CCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEcc
Q 042446 156 KLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVS 235 (445)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (445)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECC
Confidence 34444444444433333333444444444444444432221 4444555555555554441 11 22455555555
Q ss_pred CCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccc-cCCCCCCEEEccCCcCCC
Q 042446 236 QNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNF-GGMKNLSHLILQSSNLGS 314 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~ 314 (445)
+|.+.+. +. ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+..
T Consensus 108 ~n~l~~~-~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 108 NNNISRV-SC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SSCCSEE-EE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCccCCc-Cc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 5554421 11 124566666666666665555566667777777777777766555444 356777777777777655
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcce-e
Q 042446 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFI-G 393 (445)
Q Consensus 315 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~ 393 (445)
.. ....+++|++|++++|.+++ ++..+..++ +|++|++++|.++ .+|..+..+++|+.|++++|.+. +
T Consensus 184 ~~--------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 184 VK--------GQVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp EE--------CCCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred cc--------cccccccCCEEECCCCcCCc-chhhhcccC-cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 31 22346777777777777763 444455555 7777777777777 45666777777777887777776 5
Q ss_pred cCChhhhCCCCCCeEEccCCc-cccccc
Q 042446 394 TIPQEMGKLLNLQGLDFGGNH-FSGKIP 420 (445)
Q Consensus 394 ~~~~~~~~~~~L~~L~l~~n~-i~~~~~ 420 (445)
..+..+..+++|+.++++++. +++..+
T Consensus 253 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CHHHHHhccccceEEECCCchhccCCch
Confidence 566777777777777777543 443333
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.1e-27 Score=215.15 Aligned_cols=259 Identities=16% Similarity=0.152 Sum_probs=122.2
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccC
Q 042446 61 VIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQ 140 (445)
Q Consensus 61 v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~ 140 (445)
+...+++.+.+..........+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3334444444433333333344555555555555554444455555555555555555543222 45555555555555
Q ss_pred CcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCC
Q 042446 141 NKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIP 220 (445)
Q Consensus 141 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 220 (445)
|.+++. ...++|++|++++|.+ .+..+. .+++|++|++++|.+++..+
T Consensus 90 n~l~~l-----~~~~~L~~L~l~~n~l------------------------~~~~~~---~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQEL-----LVGPSIETLHAANNNI------------------------SRVSCS---RGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEEEE-----EECTTCCEEECCSSCC------------------------SEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred Cccccc-----cCCCCcCEEECCCCcc------------------------CCcCcc---ccCCCCEEECCCCCCCCccc
Confidence 554421 1224444444444444 322211 13445555555555543333
Q ss_pred ccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCC
Q 042446 221 PSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMK 300 (445)
Q Consensus 221 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 300 (445)
..+..+++|+.|++++|.+.+..+..+...+++|++|++++|.+++. + ....+++|++|++++|.+++..+ .+..++
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~ 214 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAA 214 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccC
Confidence 34444455555555555544333333322245555555555555432 1 12235556666666665553322 245555
Q ss_pred CCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce-ecCChhhhhccccCcEEEccc
Q 042446 301 NLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR-GVLPHSITNLSSQLQVLFLGF 364 (445)
Q Consensus 301 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~ 364 (445)
+|++|++++|.+.. ++..+..+++|+.|++++|.+. +.++..+..++ +|+++++++
T Consensus 215 ~L~~L~L~~N~l~~-------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~-~L~~l~l~~ 271 (317)
T 3o53_A 215 GVTWISLRNNKLVL-------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQT 271 (317)
T ss_dssp TCSEEECTTSCCCE-------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH-HHHHHHHHH
T ss_pred cccEEECcCCcccc-------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc-cceEEECCC
Confidence 55555555555543 2223445555555555555554 33344444443 455555553
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.8e-24 Score=194.37 Aligned_cols=193 Identities=25% Similarity=0.300 Sum_probs=141.0
Q ss_pred CCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCC
Q 042446 44 RHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123 (445)
Q Consensus 44 ~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 123 (445)
.++|.|.|+.|... ...+.++++++.++ .+|..+. +++++|++++|.++...+..+..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 46899999888653 34668999999887 4665554 67899999999988666667888999999999999888655
Q ss_pred CccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCC
Q 042446 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLK 203 (445)
Q Consensus 124 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 203 (445)
+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55668888999999998888765556677788888888888887766666667777777777777777654444566667
Q ss_pred CCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 204 ELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
+|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 7777777776666444444555555555555555554
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1e-28 Score=247.75 Aligned_cols=369 Identities=13% Similarity=0.092 Sum_probs=163.0
Q ss_pred cEEEEEcCCCCCccccccccc-CCCCCCEEECCCC-ccccc-CCccccCCCCCCEEECCCCcCCCCCCccC----cCCCC
Q 042446 60 RVIALDLMSKALSGSLSPHIG-NLSFLREINLMDN-TIQGE-IPPEFGRLFRLEALFLANNSLVGKIPANL----SYCSR 132 (445)
Q Consensus 60 ~v~~l~l~~~~~~~~~~~~l~-~l~~L~~L~L~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~p~~l----~~l~~ 132 (445)
++++++++++.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 445555555544443333333 3455555555555 22211 22222345555555555555443222222 23445
Q ss_pred CCEEEccCCc--Cccc-CCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccc-------cccccCcccCCC
Q 042446 133 LTVLSLGQNK--LVGS-IPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNS-------FEGNIPDSLGQL 202 (445)
Q Consensus 133 L~~L~l~~~~--~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~l~~l 202 (445)
|++|++++|. +... ++..+..+++|++|++++|.....++..+..+++|++|++..+. +. .++..+.++
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~ 264 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGC 264 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTC
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcC
Confidence 5555555543 1100 11111234555555555541111133333344445554433221 11 111123333
Q ss_pred CCCCEE-EccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccC-cccCcCCCCCCE
Q 042446 203 KELKSL-AIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSI-PVSLSNASKLEV 280 (445)
Q Consensus 203 ~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~ 280 (445)
++|+.+ .+.+... ..++..+..+++|++|++++|.+.+.....+...+++|++|++.+| +++.. +.....+++|++
T Consensus 265 ~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 265 KELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 333333 1211111 1222223345666666666665443222222233666666666665 32211 111223566666
Q ss_pred EECcc---------CcCcccCccccc-CCCCCCEEEccCCcCCCCCCCCCcccccc-cCCCCCcEEEcc--C----Ccce
Q 042446 281 IQIAN---------NSFSGKFSVNFG-GMKNLSHLILQSSNLGSGESDEMGFINSL-ANCSKLRVLSFG--R----NQFR 343 (445)
Q Consensus 281 L~l~~---------~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~--~----~~~~ 343 (445)
|++.+ +.+++.....+. .+++|++|.+..+.++. .....+ ..+++|++|+++ + +.++
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN------AALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH------HHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH------HHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 66622 233332222222 35666666555555543 111122 245666666666 2 2333
Q ss_pred ecC-----ChhhhhccccCcEEEcccCcccccCCccccC-ccCCCeeeCccCcceecCChhh-hCCCCCCeEEccCCccc
Q 042446 344 GVL-----PHSITNLSSQLQVLFLGFNQLYGSIPSGIGN-LVNLYLLAMEQNQFIGTIPQEM-GKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 344 ~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i~ 416 (445)
+.. +..+...+ +|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|+++
T Consensus 417 ~~~~~~~~~~l~~~~~-~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCK-DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp CCCTHHHHHHHHHHCT-TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred CCchhhHHHHHHhhCC-CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 110 11122223 666666655 444333333333 5667777777666654333333 45667777777777765
Q ss_pred ccccc-cccCCCCCCeEEccCCcc
Q 042446 417 GKIPS-TLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 417 ~~~~~-~l~~l~~L~~l~l~~n~~ 439 (445)
+.... .+..+++|++|++++|++
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhCCCCCEEeeeCCCC
Confidence 44332 334466777777777765
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.2e-26 Score=213.06 Aligned_cols=251 Identities=17% Similarity=0.171 Sum_probs=142.6
Q ss_pred CCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccc-cccCcccC-------CCCCCCEEEccCCCCcccCCccC-
Q 042446 153 FLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFE-GNIPDSLG-------QLKELKSLAIGVNNLSGKIPPSI- 223 (445)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~l- 223 (445)
..++|+.+++++|.+ .+|..+... |+.|++++|.+. ..++..+. ++++|++|++++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344555666666655 344433322 666666666653 22333332 46677777777777766666654
Q ss_pred -cCCCCCcEEEccCCcCCCCCCcccccC----CCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCccc--Ccccc
Q 042446 224 -CNLSFLVNFSVSQNQIHGSLPSCLGLN----FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGK--FSVNF 296 (445)
Q Consensus 224 -~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l 296 (445)
..+++|++|++++|.+.+. |..+..- +++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5666777777777766643 4433320 15566666666665554445555556666666665554322 11111
Q ss_pred cCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCccee--cCChhhhhccccCcEEEcccCcccccCC-c
Q 042446 297 GGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG--VLPHSITNLSSQLQVLFLGFNQLYGSIP-S 373 (445)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~ 373 (445)
.+..+++|++|++++|.+++ .++..+....++|++|++++|.+++..| .
T Consensus 196 ----------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 196 ----------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp ----------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred ----------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 11444555555555555541 1122222122367777777776665443 3
Q ss_pred cccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 374 GIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 374 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
.+..+++|+.|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 3445677777777777776 6666554 6778888888887744 55 7777888888888887765
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.9e-27 Score=238.55 Aligned_cols=351 Identities=13% Similarity=0.110 Sum_probs=225.0
Q ss_pred CCCCCCEEECCCCcccccCCcccc-CCCCCCEEECCCC-cCCCC-CCccCcCCCCCCEEEccCCcCcccCCccc----cC
Q 042446 81 NLSFLREINLMDNTIQGEIPPEFG-RLFRLEALFLANN-SLVGK-IPANLSYCSRLTVLSLGQNKLVGSIPFEF----VF 153 (445)
Q Consensus 81 ~l~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~i~~~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~ 153 (445)
.+++|++|+++++.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 466777777777776655554554 5677777777777 33321 33334467777777777776654333222 35
Q ss_pred CCCCCEEeccccc--CCC-CCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCC-------CcccCCccC
Q 042446 154 LYKLKGLSLHKNN--LTG-GISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNN-------LSGKIPPSI 223 (445)
Q Consensus 154 l~~L~~L~l~~~~--~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-------~~~~~~~~l 223 (445)
+++|++|++++|. +.. .+......+++|++|++++|.....++..+.++++|++|+++.+. +. .++..+
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence 5677777777765 111 111112345777777777763222355556667777777755432 22 233355
Q ss_pred cCCCCCcEE-EccCCcCCCCCCcccccCCCCccEEEccCCcCcccCc-ccCcCCCCCCEEECccCcCcccCccc-ccCCC
Q 042446 224 CNLSFLVNF-SVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIP-VSLSNASKLEVIQIANNSFSGKFSVN-FGGMK 300 (445)
Q Consensus 224 ~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~ 300 (445)
..+++|+.+ .+..... +.++.... .+++|++|++++|.+++... ..+..+++|++|++++| +.+..... ...++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred hcCCCcccccCCcccch-hhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 677777777 3332221 13333333 37899999999998765332 33568899999999998 54333332 34589
Q ss_pred CCCEEEccCC---------cCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcc--c----C
Q 042446 301 NLSHLILQSS---------NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLG--F----N 365 (445)
Q Consensus 301 ~L~~L~l~~~---------~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~ 365 (445)
+|++|+++++ .++.. .+......+++|++|.+.++.+++.....+....++|++|+++ + +
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~-----~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQ-----GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHH-----HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred CCCEEEEecCcccccccCCCCCHH-----HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 9999999553 22221 1222234589999999988888866666665433499999999 3 4
Q ss_pred cccc-----cCCccccCccCCCeeeCccCcceecCChhhhC-CCCCCeEEccCCcccccccccc-cCCCCCCeEEccCCc
Q 042446 366 QLYG-----SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGK-LLNLQGLDFGGNHFSGKIPSTL-GNLSSLSEIVLSNNN 438 (445)
Q Consensus 366 ~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~l~l~~n~ 438 (445)
.+++ .++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|+
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 5552 1222356789999999987 555455555554 8999999999999987666555 679999999999999
Q ss_pred cee
Q 042446 439 LSG 441 (445)
Q Consensus 439 ~~~ 441 (445)
++.
T Consensus 493 ~~~ 495 (594)
T 2p1m_B 493 FGD 495 (594)
T ss_dssp CCH
T ss_pred CcH
Confidence 853
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.3e-23 Score=187.94 Aligned_cols=211 Identities=17% Similarity=0.144 Sum_probs=142.1
Q ss_pred ccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCC
Q 042446 75 LSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFL 154 (445)
Q Consensus 75 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 154 (445)
+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 444443 568889998888886666678888888889888888886666678888888888888888886666778888
Q ss_pred CCCCEEecccccCCCCCCccCCCCCCcceEeecccccccc-cCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCc---
Q 042446 155 YKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGN-IPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLV--- 230 (445)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--- 230 (445)
++|++|++++|.+.+..+..+..+++|++|++++|.+... +|..+.++++|++|++++|.+++..+..+..++.|+
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 8888888888887766665677778888888888777642 466777777777777777777655555555444444
Q ss_pred -EEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCc
Q 042446 231 -NFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFS 289 (445)
Q Consensus 231 -~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (445)
.+++++|.+. .++..... ..+|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 180 l~L~ls~n~l~-~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 180 LSLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEEECCSSCCC-EECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred eeeecCCCccc-ccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 5666666554 22222222 234555555555554333333444555555555555443
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.3e-23 Score=186.85 Aligned_cols=224 Identities=19% Similarity=0.179 Sum_probs=151.9
Q ss_pred EeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCc
Q 042446 184 VSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNF 263 (445)
Q Consensus 184 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (445)
++..+..+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHcc-CCcCCCEEECCCCc
Confidence 344444444 4555443 5788888888888866666778888888888888877633333343 37788888888888
Q ss_pred CcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcce
Q 042446 264 FTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFR 343 (445)
Q Consensus 264 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 343 (445)
+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+... .++..+..+++|++|++++|+++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-----cCchhhccCCCCCEEECCCCCCC
Confidence 8776667777888888888888877766666677778888888888777553 23456677777888888877777
Q ss_pred ecCChhhhhccccCc----EEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 344 GVLPHSITNLSSQLQ----VLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 344 ~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
+..+..+..+. +|+ +|++++|.+++..+. .....+|+.|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 163 ~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 163 SIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp EECGGGGHHHH-TCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cCCHHHhhhhh-hccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 55555555544 555 677777777643333 33334677777777777644445566677777777777776643
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.4e-25 Score=213.58 Aligned_cols=217 Identities=18% Similarity=0.151 Sum_probs=120.8
Q ss_pred CCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 042446 81 NLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGL 160 (445)
Q Consensus 81 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (445)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..| +..+++|++|++++|.+++. + ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEE
Confidence 34478888888888776666777778888888888887775444 77777788888887777632 2 22667777
Q ss_pred ecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCc-CCCCCcEEEccCCcC
Q 042446 161 SLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSIC-NLSFLVNFSVSQNQI 239 (445)
Q Consensus 161 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~~~~ 239 (445)
++++|.+.+..+. .+++|+.|++++|.+++..+..++.+++|++|++++|.+.+..|..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 7777766644332 245566666666666655555555556666666666665544444443 455555555555554
Q ss_pred CCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcC
Q 042446 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNL 312 (445)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 312 (445)
.+. +... .+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ .+..+..+++|+.|++++|.+
T Consensus 182 ~~~-~~~~--~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 182 YDV-KGQV--VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEE-ECCC--CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred ccc-cccc--cCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 421 1111 144444444444444432 2224444444444444444432 222333344444444444433
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.3e-24 Score=207.09 Aligned_cols=238 Identities=18% Similarity=0.205 Sum_probs=170.8
Q ss_pred CCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCcc
Q 042446 176 GNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLK 255 (445)
Q Consensus 176 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 255 (445)
..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ +..+++|+.|++++|.+. .++ . .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~----~-~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL----V-GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE----E-CTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC----C-CCCcC
Confidence 345578888888888887666788888888888888888875444 777888888888888775 222 1 47788
Q ss_pred EEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCccccccc-CCCCCcE
Q 042446 256 FFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLA-NCSKLRV 334 (445)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~ 334 (445)
.|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+... .+..+. .+++|+.
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV------NFAELAASSDTLEH 173 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE------EGGGGGGGTTTCCE
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc------ChHHHhhhCCcccE
Confidence 888888887754433 356788888888888777777777788888888888877662 233333 5778888
Q ss_pred EEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCc
Q 042446 335 LSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNH 414 (445)
Q Consensus 335 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 414 (445)
|++++|.+++..+. ..++ +|++|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 174 L~Ls~N~l~~~~~~--~~l~-~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 174 LNLQYNFIYDVKGQ--VVFA-KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EECTTSCCCEEECC--CCCT-TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred EecCCCcccccccc--ccCC-CCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCC
Confidence 88888877654222 2233 78888888888774 4444777778888888888777 466667777788888888887
Q ss_pred cc-ccccccccCCCCCCeEEcc
Q 042446 415 FS-GKIPSTLGNLSSLSEIVLS 435 (445)
Q Consensus 415 i~-~~~~~~l~~l~~L~~l~l~ 435 (445)
+. +.+|..+..++.|+.++++
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 76 5566667777777776664
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=6.7e-22 Score=177.55 Aligned_cols=203 Identities=20% Similarity=0.206 Sum_probs=116.9
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (445)
..+.++++++.++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+....+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3567777777766 4454332 467777777777765555566677777777777776664444445666666666666
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 243 (445)
+|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~---------- 163 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR---------- 163 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE----------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE----------
Confidence 6666654444555566666666666655544444455555555555555555533333344444454444
Q ss_pred CcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCC
Q 042446 244 PSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314 (445)
Q Consensus 244 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 314 (445)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 164 ---------------L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 164 ---------------LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp ---------------CCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ---------------ecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 44444444333445555566666666665554444455556666666666665543
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.4e-22 Score=181.04 Aligned_cols=203 Identities=19% Similarity=0.177 Sum_probs=118.5
Q ss_pred cCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCC
Q 042446 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKL 278 (445)
Q Consensus 199 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 278 (445)
+++++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..+.. +++|++|++++|.+++..+ ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTT-CTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhc-CCCCCEEECCCCccCcccC--CCCCCcC
Confidence 445667777777777766 4554443 46667777777665333333333 6666677776666664322 2556666
Q ss_pred CEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCc
Q 042446 279 EVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQ 358 (445)
Q Consensus 279 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 358 (445)
++|++++|.+. ..+..+..+++|++|++++|++..... ..+..+++|++|++++|++++..+..+..++ +|+
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~ 151 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPL------GALRGLGELQELYLKGNELKTLPPGLLTPTP-KLE 151 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCS------STTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCC
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCH------HHHcCCCCCCEEECCCCCCCccChhhccccc-CCC
Confidence 66666666665 334455666666666666666655321 2455566666666666666533333333443 666
Q ss_pred EEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 359 VLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 359 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
+|++++|++++..+..+..+++|+.|++++|++. .+|..+...++|+.+++++|++.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 6666666666433334455666666666666665 55555555666666666666554
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=5.6e-25 Score=208.44 Aligned_cols=243 Identities=19% Similarity=0.234 Sum_probs=113.6
Q ss_pred CCccCCCCCCcceEeecccccccc----cCcccCCCCCCCEEEccCCCC---cccCCccC-------cCCCCCcEEEccC
Q 042446 171 ISPFLGNLTFLELVSLSYNSFEGN----IPDSLGQLKELKSLAIGVNNL---SGKIPPSI-------CNLSFLVNFSVSQ 236 (445)
Q Consensus 171 ~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~---~~~~~~~l-------~~l~~L~~L~l~~ 236 (445)
++..+..+++|++|++++|.+... ++..+.++++|++|++++|.+ .+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 444555666777777777766643 223355667777777766433 22333333 4556666666666
Q ss_pred CcCCCC----CCcccccCCCCccEEEccCCcCcccCccc----CcCC---------CCCCEEECccCcCccc-Cc---cc
Q 042446 237 NQIHGS----LPSCLGLNFPNLKFFQIDQNFFTGSIPVS----LSNA---------SKLEVIQIANNSFSGK-FS---VN 295 (445)
Q Consensus 237 ~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~---------~~L~~L~l~~~~~~~~-~~---~~ 295 (445)
|.+.+. ++..+.. +++|++|++++|.+++..+.. +..+ ++|++|++++|.+++. .+ ..
T Consensus 104 n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 665531 3333333 555555555555554322222 2222 5555555555555421 11 23
Q ss_pred ccCCCCCCEEEccCCcCCCCCCCCCcccc-cccCCCCCcEEEccCCcce----ecCChhhhhccccCcEEEcccCccccc
Q 042446 296 FGGMKNLSHLILQSSNLGSGESDEMGFIN-SLANCSKLRVLSFGRNQFR----GVLPHSITNLSSQLQVLFLGFNQLYGS 370 (445)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~ 370 (445)
+..+++|++|++++|.+...... .+.. .+..+++|++|++++|.++ ..++..+...+ +|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~--~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIE--HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHH--HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHH--HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEEECCCCCCchh
Confidence 34455555555555544321000 0111 3444555555555555543 22333333333 455555555554432
Q ss_pred ----CCcccc--CccCCCeeeCccCccee----cCChhh-hCCCCCCeEEccCCcccc
Q 042446 371 ----IPSGIG--NLVNLYLLAMEQNQFIG----TIPQEM-GKLLNLQGLDFGGNHFSG 417 (445)
Q Consensus 371 ----~~~~~~--~~~~L~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~l~~n~i~~ 417 (445)
++..+. .+++|+.|++++|.+.+ .++..+ .++++|+.|++++|++++
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 222331 14445555555554443 234333 334455555555555443
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.4e-22 Score=178.93 Aligned_cols=203 Identities=22% Similarity=0.192 Sum_probs=105.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
++++.++++++.+.. ...+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 445555555555542 1235555556666666555542 2 24555555666666655555444444555555555555
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 55555544444455555555555555555544444445555555555555555544444445555555555555555544
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCc
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLS 273 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 273 (445)
.+..+..+++|+.|++++|.+.+ .++.|+.+++..|.+.+.+|.+++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred CHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCccc
Confidence 44444555555555555554431 133444444444444444444443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.3e-21 Score=177.19 Aligned_cols=202 Identities=23% Similarity=0.261 Sum_probs=100.5
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 79 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
+.++++++.++++++.++ .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 344555555555555555 3333322 455555555555554444555555555555555555542221 14455555
Q ss_pred EEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCc
Q 042446 159 GLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 159 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 238 (445)
+|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555554 344444555555555555555554333445555555555555555553333344445555555555555
Q ss_pred CCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcC
Q 042446 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSF 288 (445)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 288 (445)
+. .++......+++|++|++++|.++ .+|..+...++|+.+++++|.+
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 44 333333223445555555555444 3344444444555555555544
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.2e-24 Score=201.24 Aligned_cols=257 Identities=16% Similarity=0.160 Sum_probs=174.7
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccC----cccCCCC-CCCEEEccCCCCcccCCccCcCC-----CCC
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP----DSLGQLK-ELKSLAIGVNNLSGKIPPSICNL-----SFL 229 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~L 229 (445)
+.++.|.+.+.++..+...++|++|++++|.+....+ ..+.+++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677788877777766666679999999888875554 5677777 88899998888886666666554 888
Q ss_pred cEEEccCCcCCCCCCccccc---CC-CCccEEEccCCcCcccCcccC----cC-CCCCCEEECccCcCcccCcc----cc
Q 042446 230 VNFSVSQNQIHGSLPSCLGL---NF-PNLKFFQIDQNFFTGSIPVSL----SN-ASKLEVIQIANNSFSGKFSV----NF 296 (445)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~---~~-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~~~----~l 296 (445)
++|++++|.+.+..+..+.. .. ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888887555443322 13 788888888888876554333 33 35888888888888754433 33
Q ss_pred cCCC-CCCEEEccCCcCCCCCCCCCcccccccCC-CCCcEEEccCCcceec----CChhhhhccccCcEEEcccCccccc
Q 042446 297 GGMK-NLSHLILQSSNLGSGESDEMGFINSLANC-SKLRVLSFGRNQFRGV----LPHSITNLSSQLQVLFLGFNQLYGS 370 (445)
Q Consensus 297 ~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~ 370 (445)
..++ +|++|++++|.+...... .+...+..+ ++|++|++++|.+.+. ++..+...+++|++|++++|.+++.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred hcCCccccEeeecCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 4554 888888888887653321 223344555 4888888888887753 3334444344788888888887754
Q ss_pred CC----ccccCccCCCeeeCccCccee-------cCChhhhCCCCCCeEEccCCccccc
Q 042446 371 IP----SGIGNLVNLYLLAMEQNQFIG-------TIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 371 ~~----~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
.+ ..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|++.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33 234556788888888887332 2334556677788888888887755
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7.8e-24 Score=196.77 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=113.5
Q ss_pred CCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCC-CCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEE
Q 042446 203 KELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS-LPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVI 281 (445)
Q Consensus 203 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (445)
+.++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+. .+++|++|++++|.+++..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4455555555554433222 33455555555555554422 233232 25555555555555554445555555666666
Q ss_pred ECccC-cCccc-CcccccCCCCCCEEEccCC-cCCCCCCCCCcccccccCCC-CCcEEEccCC--cce-ecCChhhhhcc
Q 042446 282 QIANN-SFSGK-FSVNFGGMKNLSHLILQSS-NLGSGESDEMGFINSLANCS-KLRVLSFGRN--QFR-GVLPHSITNLS 354 (445)
Q Consensus 282 ~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~--~~~-~~~~~~~~~~~ 354 (445)
++++| .+++. .+..+..+++|++|++++| .+... .++..+..++ +|++|++++| .++ +.++..+..++
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 66665 34432 3333455566666666665 44331 1233445555 6666666665 233 12333333443
Q ss_pred ccCcEEEcccCc-ccccCCccccCccCCCeeeCccCc-ceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeE
Q 042446 355 SQLQVLFLGFNQ-LYGSIPSGIGNLVNLYLLAMEQNQ-FIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 355 ~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l 432 (445)
+|++|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +.+.....+. ..++.|
T Consensus 223 -~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L 298 (336)
T 2ast_B 223 -NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHL 298 (336)
T ss_dssp -TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTS
T ss_pred -CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcce
Confidence 56666666665 444445555556666666666663 22111224555666666666666 3322211121 124444
Q ss_pred EccCCcceecCC
Q 042446 433 VLSNNNLSGVIP 444 (445)
Q Consensus 433 ~l~~n~~~~~~p 444 (445)
++++|++++..|
T Consensus 299 ~l~~n~l~~~~~ 310 (336)
T 2ast_B 299 QINCSHFTTIAR 310 (336)
T ss_dssp EESCCCSCCTTC
T ss_pred EEecccCccccC
Confidence 566666666555
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.4e-22 Score=178.89 Aligned_cols=180 Identities=23% Similarity=0.236 Sum_probs=97.6
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 79 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
...+++|+.|++.++.++ .++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 344566666666666655 222 35566666666666666653 2 3455666666666666666644444456666666
Q ss_pred EEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCc
Q 042446 159 GLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 159 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 238 (445)
+|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 66666666655444445555666666666665554444445555555555555555554334444455555555555555
Q ss_pred CCCCCCcccccCCCCccEEEccCCc
Q 042446 239 IHGSLPSCLGLNFPNLKFFQIDQNF 263 (445)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (445)
+.+..+..+. .+++|+.|++++|.
T Consensus 193 l~~~~~~~~~-~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 LKSVPDGVFD-RLTSLQYIWLHDNP 216 (272)
T ss_dssp CSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred CCccCHHHHh-CCcCCCEEEccCCC
Confidence 5432222222 24444444444443
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=9.9e-22 Score=174.46 Aligned_cols=191 Identities=23% Similarity=0.213 Sum_probs=159.2
Q ss_pred CCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCC
Q 042446 45 HFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIP 124 (445)
Q Consensus 45 ~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p 124 (445)
.|+.|.|..|... .+.++++++.++ .+|..+. +.++.|++++|.+.+..+..+.++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~~---~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNEG---KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEGG---GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCCC---CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 4778989999542 446889999887 5666554 689999999999998778889999999999999999998778
Q ss_pred ccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCC
Q 042446 125 ANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKE 204 (445)
Q Consensus 125 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 204 (445)
..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88899999999999999998666677888999999999999988766666788889999999999888665567888888
Q ss_pred CCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCC
Q 042446 205 LKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 205 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 241 (445)
|++|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8889988888886666677788888888888887763
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.5e-23 Score=194.90 Aligned_cols=254 Identities=15% Similarity=0.139 Sum_probs=135.3
Q ss_pred CCEEECCCCcccccCCccccCC--CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCccc-CCccccCCCCCCEEe
Q 042446 85 LREINLMDNTIQGEIPPEFGRL--FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGS-IPFEFVFLYKLKGLS 161 (445)
Q Consensus 85 L~~L~L~~~~~~~~~~~~~~~~--~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 161 (445)
++.++++++.+. +..+..+ +++++|+++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 567777777665 2344555 6777777777777654443 44567777777777766533 455555666666666
Q ss_pred cccccCCCCCCccCCCCCCcceEeeccc-ccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCC-cC
Q 042446 162 LHKNNLTGGISPFLGNLTFLELVSLSYN-SFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQN-QI 239 (445)
Q Consensus 162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~-~~ 239 (445)
+++|.+.+..+..+..+++|++|++++| .+++. .++..+..+++|++|++++| .+
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------------------~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------------------ALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------------HHHHHHHHCTTCCEEECCCCTTC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------------HHHHHHhcCCCCCEEcCCCCCCc
Confidence 6666555444444444555555555554 23321 12223333444444444444 33
Q ss_pred CCC-CCcccccCCC-CccEEEccCC--cCc-ccCcccCcCCCCCCEEECccCc-CcccCcccccCCCCCCEEEccCCc-C
Q 042446 240 HGS-LPSCLGLNFP-NLKFFQIDQN--FFT-GSIPVSLSNASKLEVIQIANNS-FSGKFSVNFGGMKNLSHLILQSSN-L 312 (445)
Q Consensus 240 ~~~-~~~~~~~~~~-~L~~L~l~~~--~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~ 312 (445)
.+. ++..+.. ++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +
T Consensus 182 ~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 182 TEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred ChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 321 2222222 44 5555555555 233 2334445556667777777766 555555566666777777776664 2
Q ss_pred CCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCcccc
Q 042446 313 GSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIG 376 (445)
Q Consensus 313 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 376 (445)
.. .....+..+++|++|++++| +++. .+......+..|++++|.+++..|..+.
T Consensus 261 ~~------~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 261 IP------ETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CG------GGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CH------HHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 11 11224556677777777766 3322 1222222455566666666655554443
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=7.6e-24 Score=200.61 Aligned_cols=86 Identities=20% Similarity=0.243 Sum_probs=37.1
Q ss_pred cCcEEEcccCccc----ccCCccccCccCCCeeeCccCcceec----CChhhhC--CCCCCeEEccCCcccc----cccc
Q 042446 356 QLQVLFLGFNQLY----GSIPSGIGNLVNLYLLAMEQNQFIGT----IPQEMGK--LLNLQGLDFGGNHFSG----KIPS 421 (445)
Q Consensus 356 ~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~--~~~L~~L~l~~n~i~~----~~~~ 421 (445)
+|++|++++|.++ ..+|..+..+++|+.|++++|.+.+. ++..+.. +++|+.|+|++|.+++ .+|.
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 4444444444443 22333444444444444444444422 2233321 4444444444444443 2333
Q ss_pred cc-cCCCCCCeEEccCCccee
Q 042446 422 TL-GNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 422 ~l-~~l~~L~~l~l~~n~~~~ 441 (445)
.+ .++++|++|++++|++++
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCT
T ss_pred HHHhcCCCceEEEccCCcCCc
Confidence 33 334444444444444443
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=5.2e-22 Score=182.06 Aligned_cols=203 Identities=15% Similarity=0.143 Sum_probs=109.1
Q ss_pred CCCCEEECCCCcccccCCc---cccCCCCCCEEECCCCcCCCCCCccC--cCCCCCCEEEccCCcCcccCC----ccccC
Q 042446 83 SFLREINLMDNTIQGEIPP---EFGRLFRLEALFLANNSLVGKIPANL--SYCSRLTVLSLGQNKLVGSIP----FEFVF 153 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~---~~~~~~~L~~L~l~~~~i~~~~p~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 153 (445)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4467777777666432111 11234557777777777776677666 677777777777777764333 23345
Q ss_pred CCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccc--c--CcccCCCCCCCEEEccCCCCcccCCc----cCcC
Q 042446 154 LYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGN--I--PDSLGQLKELKSLAIGVNNLSGKIPP----SICN 225 (445)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~ 225 (445)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . +..+.++++|++|++++|.++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 66777777777776666566666666666666666665421 1 122345566666666666554 2221 1234
Q ss_pred CCCCcEEEccCCcCCCCCCcccccC--CCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCc
Q 042446 226 LSFLVNFSVSQNQIHGSLPSCLGLN--FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFS 289 (445)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (445)
+++|++|++++|.+.+..|..+... +++|++|++++|.++ .+|..+. ++|++|++++|.++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 4555555555555554334333221 134444444444444 2333332 34444444444443
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.6e-23 Score=196.40 Aligned_cols=268 Identities=14% Similarity=0.134 Sum_probs=153.2
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCC----ccccCCC-CCCEEECCCCcCCCCCCccCcCC-----CCC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIP----PEFGRLF-RLEALFLANNSLVGKIPANLSYC-----SRL 133 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~i~~~~p~~l~~l-----~~L 133 (445)
+.++.+.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677777777777666666668888888888875555 5667777 78888888888776656555553 778
Q ss_pred CEEEccCCcCcccCCcc----ccCC-CCCCEEecccccCCCCCCcc----CCC-CCCcceEeecccccccccCcccCCCC
Q 042446 134 TVLSLGQNKLVGSIPFE----FVFL-YKLKGLSLHKNNLTGGISPF----LGN-LTFLELVSLSYNSFEGNIPDSLGQLK 203 (445)
Q Consensus 134 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~~~~l~~l~ 203 (445)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+.......
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----- 157 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE----- 157 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-----
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-----
Confidence 88888888776544443 3333 66777777777665433322 122 235555555555544211111
Q ss_pred CCCEEEccCCCCcccCCccCcCCC-CCcEEEccCCcCCCCCCccccc---CC-CCccEEEccCCcCccc----CcccCcC
Q 042446 204 ELKSLAIGVNNLSGKIPPSICNLS-FLVNFSVSQNQIHGSLPSCLGL---NF-PNLKFFQIDQNFFTGS----IPVSLSN 274 (445)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~---~~-~~L~~L~l~~~~~~~~----~~~~l~~ 274 (445)
++..+..++ +|++|++++|.+.+..+..+.. .. ++|++|++++|.+++. ++..+..
T Consensus 158 ---------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 158 ---------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp ---------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ---------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 111122222 4455555554444322221111 12 3555666665555532 2333333
Q ss_pred -CCCCCEEECccCcCcccCc----ccccCCCCCCEEEccCCcCCCCCCCC-CcccccccCCCCCcEEEccCCcceecCCh
Q 042446 275 -ASKLEVIQIANNSFSGKFS----VNFGGMKNLSHLILQSSNLGSGESDE-MGFINSLANCSKLRVLSFGRNQFRGVLPH 348 (445)
Q Consensus 275 -~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 348 (445)
.++|++|++++|.+++... ..+..+++|+.|++++|.+....... ..+...+..+++|+.|++++|.+.+..+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 3477777777777765433 33456677777777777744332210 12334566778888888888888765454
Q ss_pred hhh
Q 042446 349 SIT 351 (445)
Q Consensus 349 ~~~ 351 (445)
.+.
T Consensus 303 ~~~ 305 (362)
T 3goz_A 303 PIS 305 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=184.25 Aligned_cols=232 Identities=13% Similarity=0.110 Sum_probs=136.1
Q ss_pred CcceEeecccccccccCc---ccCCCCCCCEEEccCCCCcccCCccC--cCCCCCcEEEccCCcCCCCCCcccccCCCCc
Q 042446 180 FLELVSLSYNSFEGNIPD---SLGQLKELKSLAIGVNNLSGKIPPSI--CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNL 254 (445)
Q Consensus 180 ~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 254 (445)
.++.+.+.++.+...... .+...++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------- 137 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------- 137 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-------
Confidence 455666665554321100 01123457777777777766666665 566666666666666654322100
Q ss_pred cEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcE
Q 042446 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRV 334 (445)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 334 (445)
...+..+++|++|++++|.+.+..+..+..+++|++|++++|++...... .....+..+++|++
T Consensus 138 --------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 138 --------------ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL--MAALCPHKFPAIQN 201 (310)
T ss_dssp --------------HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH--HTTSCTTSSCCCCS
T ss_pred --------------HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh--hHHHhhhcCCCCCE
Confidence 01222344555555555555444444555555555555555544321000 00112345667777
Q ss_pred EEccCCcceecCCh---hh-hhccccCcEEEcccCcccccCCccccCc---cCCCeeeCccCcceecCChhhhCCCCCCe
Q 042446 335 LSFGRNQFRGVLPH---SI-TNLSSQLQVLFLGFNQLYGSIPSGIGNL---VNLYLLAMEQNQFIGTIPQEMGKLLNLQG 407 (445)
Q Consensus 335 L~l~~~~~~~~~~~---~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 407 (445)
|++++|.++ .++. .+ ..+. +|++|++++|.+++..|..+..+ ++|+.|++++|.+. .+|..+. ++|+.
T Consensus 202 L~Ls~N~l~-~l~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~ 276 (310)
T 4glp_A 202 LALRNTGME-TPTGVCAALAAAGV-QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRV 276 (310)
T ss_dssp CBCCSSCCC-CHHHHHHHHHHHTC-CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSC
T ss_pred EECCCCCCC-chHHHHHHHHhcCC-CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCE
Confidence 777777765 2222 12 2334 78888888888876656666555 68888888888888 6676664 78899
Q ss_pred EEccCCcccccccccccCCCCCCeEEccCCccee
Q 042446 408 LDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 408 L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~~ 441 (445)
|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 277 L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 277 LDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99999988843 33 5677889999999998864
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2.8e-21 Score=170.28 Aligned_cols=197 Identities=13% Similarity=0.136 Sum_probs=162.2
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCc-CCCCCCccCcCCCCCCEEEccC-CcCcccCCccccCCCCCCEE
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNS-LVGKIPANLSYCSRLTVLSLGQ-NKLVGSIPFEFVFLYKLKGL 160 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~p~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 160 (445)
++|++|++++|.+++..+..+..+++|++|++++|. +++..+..+.++++|++|++++ |.+....+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999987777788999999999999997 8766666888999999999998 88886666788999999999
Q ss_pred ecccccCCCCCCccCCCCCCcc---eEeeccc-ccccccCcccCCCCCCC-EEEccCCCCcccCCccCcCCCCCcEEEcc
Q 042446 161 SLHKNNLTGGISPFLGNLTFLE---LVSLSYN-SFEGNIPDSLGQLKELK-SLAIGVNNLSGKIPPSICNLSFLVNFSVS 235 (445)
Q Consensus 161 ~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (445)
++++|.+.+ +|. +..+++|+ +|++++| .+....+..|.++++|+ +|++++|.++ .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999885 555 78888888 9999999 88866666789999999 9999999998 555544444889999999
Q ss_pred CCc-CCCCCCcccccCC-CCccEEEccCCcCcccCcccCcCCCCCCEEECccC
Q 042446 236 QNQ-IHGSLPSCLGLNF-PNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANN 286 (445)
Q Consensus 236 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (445)
+|+ +. .++......+ ++|+.|++++|.+++ +|.. .+++|+.|++.++
T Consensus 188 ~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCC-EECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcc-cCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 995 76 5554444447 899999999999885 4433 6788999998876
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=6.7e-21 Score=167.86 Aligned_cols=197 Identities=17% Similarity=0.154 Sum_probs=137.1
Q ss_pred CCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc-CcccCCccccCCCCCCEEeccc-ccCCCCCCccCCCCCCcceE
Q 042446 107 FRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK-LVGSIPFEFVFLYKLKGLSLHK-NNLTGGISPFLGNLTFLELV 184 (445)
Q Consensus 107 ~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L 184 (445)
.+|++|++++|.+++..+..+.++++|++|++++|. +....+..|.++++|++|++++ |.+....+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378899999998886666678888999999999886 7755566788888888888888 78876666677788888888
Q ss_pred eecccccccccCcccCCCCCCC---EEEccCC-CCcccCCccCcCCCCCc-EEEccCCcCCCCCCcccccCCCCccEEEc
Q 042446 185 SLSYNSFEGNIPDSLGQLKELK---SLAIGVN-NLSGKIPPSICNLSFLV-NFSVSQNQIHGSLPSCLGLNFPNLKFFQI 259 (445)
Q Consensus 185 ~l~~~~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 259 (445)
++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ .+++++|.+. .++...... ++|++|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEc
Confidence 888888774 554 77777777 8888887 77755555677777777 7777777765 555544442 56666666
Q ss_pred cCCc-CcccCcccCcCC-CCCCEEECccCcCcccCcccccCCCCCCEEEccCC
Q 042446 260 DQNF-FTGSIPVSLSNA-SKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSS 310 (445)
Q Consensus 260 ~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 310 (445)
++|. +++..+..+..+ ++|++|++++|.++..... .+++|+.|.++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6663 554444555555 6666666666665533222 3455555555443
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.3e-20 Score=165.68 Aligned_cols=180 Identities=20% Similarity=0.239 Sum_probs=122.3
Q ss_pred CCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEc
Q 042446 228 FLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLIL 307 (445)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (445)
..+.++++++.+. .+|..+ .+.++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567777777766 566554 357778888888777666667777778888888887777666666777777777777
Q ss_pred cCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCc
Q 042446 308 QSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAME 387 (445)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 387 (445)
++|.+..... ..+..+++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..+..+++|+.|+++
T Consensus 91 ~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQLASLPL------GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TTSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcccccCh------hHhcccCCCCEEEcCCCcCCCcChhHhccCC-cccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 7777765322 2456667777777777777644333344444 67777777777765444456667777777777
Q ss_pred cCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 388 QNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 388 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
+|.+.+..+..+..+++|+.|++++|++...
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777655555666677777777777776543
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.2e-20 Score=170.86 Aligned_cols=195 Identities=19% Similarity=0.299 Sum_probs=151.4
Q ss_pred cCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCC
Q 042446 199 LGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKL 278 (445)
Q Consensus 199 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 278 (445)
...+++|++|+++++.+. .++ .+..+++|+.|++++|.+. .++. +. .+++|++|++++|.+++. ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 345788999999999887 444 5788899999999999887 4444 43 488999999999988753 368888999
Q ss_pred CEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCc
Q 042446 279 EVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQ 358 (445)
Q Consensus 279 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 358 (445)
++|++++|.+++.. .+..+++|++|++++|.+.... .+..+++|+.|++++|.+++ ++. +..++ +|+
T Consensus 110 ~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L~ 176 (308)
T 1h6u_A 110 KTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--------PLAGLTNLQYLSIGNAQVSD-LTP-LANLS-KLT 176 (308)
T ss_dssp CEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEECCSSCCCC-CGG-GTTCT-TCC
T ss_pred CEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCc--------cccCCCCccEEEccCCcCCC-Chh-hcCCC-CCC
Confidence 99999999887543 3788899999999998886632 26778889999999988874 333 55555 889
Q ss_pred EEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccc
Q 042446 359 VLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417 (445)
Q Consensus 359 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 417 (445)
+|++++|.+++. +. +..+++|+.|++++|.+.+.. .+..+++|+.|++++|++++
T Consensus 177 ~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 177 TLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred EEECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 999999888743 32 777888999999988887433 37788889999999888874
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.3e-20 Score=170.63 Aligned_cols=193 Identities=24% Similarity=0.370 Sum_probs=106.4
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKG 159 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (445)
..+++|++|+++++.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+ ++ .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCE
Confidence 34566667777766665 333 45666677777777766663 333 6666677777777666652 22 4566666666
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcC
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 239 (445)
|++++|.+.+. + .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS-P-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc-c-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 66666666532 2 2555666666666666655322 1 5555666666666666552 222 55555555565555555
Q ss_pred CCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCc
Q 042446 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFS 289 (445)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (445)
.+ ++. +. .+++|++|++++|.+.+.. .+..+++|++|++++|.++
T Consensus 186 ~~-~~~-l~-~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SD-ISP-LA-SLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CC-CGG-GG-GCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred Cc-Chh-hc-CCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 42 222 22 2455555555555554322 2444555555555555443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1e-19 Score=156.63 Aligned_cols=183 Identities=23% Similarity=0.231 Sum_probs=125.7
Q ss_pred CCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCC
Q 042446 44 RHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKI 123 (445)
Q Consensus 44 ~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 123 (445)
...|.|.++.|... .++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 4 ~C~C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 45678887777543 232 233322 457889999999888666666788888999999888888665
Q ss_pred CccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCC
Q 042446 124 PANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLK 203 (445)
Q Consensus 124 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 203 (445)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 66678888888888888888755555577788888888888877765555566777777777777777654444566666
Q ss_pred CCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccc
Q 042446 204 ELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLG 248 (445)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 248 (445)
+|++|++++|.+. +.++.|+.|+++.|.+.+.+|..+.
T Consensus 149 ~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 149 SLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 7777777666544 3344556666666655555555443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=5e-19 Score=152.32 Aligned_cols=181 Identities=22% Similarity=0.178 Sum_probs=136.1
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56777777776 445433 458889999999888666667788889999999988888555556788888888888888
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCc
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPS 245 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 245 (445)
.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 8886666667788888888888888886555567788888888888888875555557778888888888886542
Q ss_pred ccccCCCCccEEEccCCcCcccCcccCcCCCC
Q 042446 246 CLGLNFPNLKFFQIDQNFFTGSIPVSLSNASK 277 (445)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 277 (445)
.++.|+.|++..|.+++.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 2566777777777777777776665544
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=8.5e-19 Score=163.41 Aligned_cols=240 Identities=18% Similarity=0.169 Sum_probs=155.7
Q ss_pred CEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCC-ccCcCCCCCcE-EEcc
Q 042446 158 KGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIP-PSICNLSFLVN-FSVS 235 (445)
Q Consensus 158 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~-L~l~ 235 (445)
++++.+++.++ .+|..+ .+++++|++++|.++...+.+|.++++|++|++++|.+.+.++ ..|..++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777777777 556554 3578888888888885444578888888888888888765444 45667777665 4455
Q ss_pred CCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECcc-CcCcccCcccccCCC-CCCEEEccCCcCC
Q 042446 236 QNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIAN-NSFSGKFSVNFGGMK-NLSHLILQSSNLG 313 (445)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~~~~~ 313 (445)
.|++. .++......+++|++|++++|.+....+..+....++..+++.+ +.+.......|..++ .++.|++++|++.
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 56666 44333333478888888888887765555555666777777765 355555555555553 5777888888776
Q ss_pred CCCCCCCcccccccCCCCCcEEEccC-CcceecCChh-hhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcc
Q 042446 314 SGESDEMGFINSLANCSKLRVLSFGR-NQFRGVLPHS-ITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQF 391 (445)
Q Consensus 314 ~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 391 (445)
.+.. ......+|+++.+.+ |.++ .+|.. +..+. +|++|++++|+++ .+|.. .+.+|+.|.+.++..
T Consensus 168 ~i~~-------~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~-~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 168 EIHN-------SAFNGTQLDELNLSDNNNLE-ELPNDVFHGAS-GPVILDISRTRIH-SLPSY--GLENLKKLRARSTYN 235 (350)
T ss_dssp EECT-------TSSTTEEEEEEECTTCTTCC-CCCTTTTTTEE-CCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTT
T ss_pred CCCh-------hhccccchhHHhhccCCccc-CCCHHHhccCc-ccchhhcCCCCcC-ccChh--hhccchHhhhccCCC
Confidence 5332 333455678888865 4444 55544 34444 7888888888877 34432 244566666655554
Q ss_pred eecCChhhhCCCCCCeEEccCCc
Q 042446 392 IGTIPQEMGKLLNLQGLDFGGNH 414 (445)
Q Consensus 392 ~~~~~~~~~~~~~L~~L~l~~n~ 414 (445)
.+.+|. +..+++|+.+++.++.
T Consensus 236 l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 236 LKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCCCC-TTTCCSCCEEECSCHH
T ss_pred cCcCCC-chhCcChhhCcCCCCc
Confidence 446663 6677788888877643
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.5e-18 Score=161.77 Aligned_cols=234 Identities=15% Similarity=0.067 Sum_probs=157.3
Q ss_pred CCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCC-ccCcCCCCCCE-EEccCCcCcc
Q 042446 68 SKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIP-ANLSYCSRLTV-LSLGQNKLVG 145 (445)
Q Consensus 68 ~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p-~~l~~l~~L~~-L~l~~~~~~~ 145 (445)
++.++ .+|..+ .+++++|+|++|.++...+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.+.+|++..
T Consensus 18 ~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 18 ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 34454 455544 3678999999999986666678999999999999999865554 46788888775 5566788886
Q ss_pred cCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecc-cccccccCcccCCC-CCCCEEEccCCCCcccCCccC
Q 042446 146 SIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSY-NSFEGNIPDSLGQL-KELKSLAIGVNNLSGKIPPSI 223 (445)
Q Consensus 146 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l 223 (445)
..|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+ ..++.|++++|.++ .++...
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~ 173 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA 173 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTS
T ss_pred cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhh
Confidence 7778889999999999999988866666666677788888865 44554444455555 35778888888887 455555
Q ss_pred cCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCC
Q 042446 224 CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303 (445)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 303 (445)
....+|+++++..+...+.+|...+..+++|+.|++++|.++...+.. +.+|+.|.+.++.-....+ .+..+++|+
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~ 249 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALM 249 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCC
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChh
Confidence 555677777776543334666655455777777777777776432222 3445555554443222333 245566666
Q ss_pred EEEccC
Q 042446 304 HLILQS 309 (445)
Q Consensus 304 ~L~l~~ 309 (445)
.+++.+
T Consensus 250 ~l~l~~ 255 (350)
T 4ay9_X 250 EASLTY 255 (350)
T ss_dssp EEECSC
T ss_pred hCcCCC
Confidence 666544
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=4.4e-19 Score=173.97 Aligned_cols=203 Identities=22% Similarity=0.285 Sum_probs=144.0
Q ss_pred CCCCCCCCc-----ceeee-EeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEE
Q 042446 39 SWNDSRHFC-----EWDGV-TCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEAL 112 (445)
Q Consensus 39 ~w~~~~~~c-----~~~~~-~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 112 (445)
.|......| .|.++ .|.. .+++.++++++.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 455555556 68887 6654 478899999999876 66655 378999999999988 666 457889999
Q ss_pred ECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccc
Q 042446 113 FLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFE 192 (445)
Q Consensus 113 ~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 192 (445)
++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|.++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 999999885 666 554 89999999998885 554 57888888888888875 444 4678888888888877
Q ss_pred cccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCC-------cEEEccCCcCCCCCCcccccCCCCccEEEccCCcCc
Q 042446 193 GNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFL-------VNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT 265 (445)
Q Consensus 193 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (445)
+ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.+. .+|..+.. +++|+.|++++|.++
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLS 243 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCC
T ss_pred C-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCC
Confidence 4 555 54 78888888888877 5555 433 45 66666666665 45555554 666666666666665
Q ss_pred ccCcccC
Q 042446 266 GSIPVSL 272 (445)
Q Consensus 266 ~~~~~~l 272 (445)
+..|..+
T Consensus 244 ~~~p~~l 250 (571)
T 3cvr_A 244 SRIRESL 250 (571)
T ss_dssp HHHHHHH
T ss_pred CcCHHHH
Confidence 5444443
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=4.2e-18 Score=148.58 Aligned_cols=164 Identities=26% Similarity=0.259 Sum_probs=120.1
Q ss_pred CCCCCCCCCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCC
Q 042446 37 LNSWNDSRHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLAN 116 (445)
Q Consensus 37 ~~~w~~~~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 116 (445)
...|..+...|.|.++.|... .+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS 73 (229)
T ss_dssp --CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hhccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC
Confidence 345666778999999888653 232 3444333 7889999999999877788888899999999999
Q ss_pred CcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccC
Q 042446 117 NSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIP 196 (445)
Q Consensus 117 ~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 196 (445)
|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+
T Consensus 74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 74 NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 9988655566788888999999888888555556777888888888888777 556666677777777777777664444
Q ss_pred cccCCCCCCCEEEccCCCCc
Q 042446 197 DSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 197 ~~l~~l~~L~~L~l~~n~~~ 216 (445)
..+..+++|++|++++|.+.
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBC
T ss_pred HHHhCCCCCCEEEeeCCCcc
Confidence 55666666666666666654
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=4.2e-18 Score=154.25 Aligned_cols=172 Identities=22% Similarity=0.333 Sum_probs=130.9
Q ss_pred cCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCC
Q 042446 224 CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLS 303 (445)
Q Consensus 224 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 303 (445)
..+++|+.|++++|.+. .++. +.. +++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhcCcccEEEccCCCcc-cChh-Hhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 45678889999988876 4443 333 8889999999988886433 78888899999998888653 3478888888
Q ss_pred EEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCe
Q 042446 304 HLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYL 383 (445)
Q Consensus 304 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 383 (445)
+|++++|.+... ..+..+++|+.|++++|.+++. ..+..++ +|++|++++|.+++..+ +..+++|+.
T Consensus 116 ~L~L~~n~i~~~--------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 116 SLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp EEECTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred EEECCCCcCCCC--------hhhcCCCCCCEEEccCCcCCcc--hhhccCC-CCCEEEccCCccccchh--hcCCCccCE
Confidence 888888887663 2567788888888888888743 4555555 88888888888875433 777888888
Q ss_pred eeCccCcceecCChhhhCCCCCCeEEccCCcccc
Q 042446 384 LAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSG 417 (445)
Q Consensus 384 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~ 417 (445)
|++++|.+. .++ .+..+++|+.|++++|+++.
T Consensus 183 L~L~~N~i~-~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCC-BCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCC-CCh-hhccCCCCCEEECcCCcccC
Confidence 888888877 344 37788888888888888774
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.5e-17 Score=163.06 Aligned_cols=186 Identities=23% Similarity=0.351 Sum_probs=144.2
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecc
Q 042446 84 FLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLH 163 (445)
Q Consensus 84 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (445)
+|++|+++++.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78999999999884 66655 378999999999988 566 457899999999998885 665 554 89999999
Q ss_pred cccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCC
Q 042446 164 KNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSL 243 (445)
Q Consensus 164 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 243 (445)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.+. .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 998886 554 57889999999998884 555 56889999999998884 666 54 88999999998887 66
Q ss_pred CcccccCCCCc-------cEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 244 PSCLGLNFPNL-------KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 244 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
|. +. .+| +.|++++|.++ .+|..+..+++|++|++++|.+++..+..+..
T Consensus 196 p~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 66 32 256 88888888887 46777777888888888888887766655544
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.8e-18 Score=145.35 Aligned_cols=155 Identities=16% Similarity=0.214 Sum_probs=108.1
Q ss_pred cCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhh
Q 042446 273 SNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITN 352 (445)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 352 (445)
..+++|++|++++|.+.+. + .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~--------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN--------YNPISGLSNLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC--------CGGGTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc--------chhhhcCCCCCEEEeECCccCcccChhhcC
Confidence 3455666666666666522 2 45666677777777664433 224566777777777777777656666666
Q ss_pred ccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeE
Q 042446 353 LSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 353 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l 432 (445)
++ +|++|++++|.+++..+..+..+++|+.|++++|...+.++ .+..+++|+.|++++|++++ ++ .+..+++|++|
T Consensus 111 l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp CT-TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred CC-CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 65 78888888888876667777888888888888887333555 57788889999999988884 33 67788899999
Q ss_pred EccCCccee
Q 042446 433 VLSNNNLSG 441 (445)
Q Consensus 433 ~l~~n~~~~ 441 (445)
++++|++.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999998865
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.3e-17 Score=142.86 Aligned_cols=150 Identities=23% Similarity=0.266 Sum_probs=113.3
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
++.+++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 445555554 3454443 6788999999888876667788888888888888888877788888888888888888888
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 216 (445)
+...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8555555677888888888888887776777777777777777777777655556777777777777777664
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=3.3e-17 Score=141.90 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=111.5
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56778777776 5555443 57888888888888666667788888888888888887666777888888888888888
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 877555555677777777777777777666667777777777777777777555555666777777777776553
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.8e-17 Score=150.12 Aligned_cols=172 Identities=25% Similarity=0.333 Sum_probs=85.9
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 042446 80 GNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKG 159 (445)
Q Consensus 80 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (445)
..+++|++|+++++.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 34555666666666554 222 25556666666666666553222 5555666666666665542 22 2555555555
Q ss_pred EecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcC
Q 042446 160 LSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQI 239 (445)
Q Consensus 160 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 239 (445)
|++++|.+.+. ..+..+++|++|++++|.+.+ . ..+..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~------------------------~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITD------------------------I--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC------------------------C--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc------------------------c--hhhccCCCCCEEEccCCcc
Confidence 55555554421 223444444444444444432 1 3344444444444444444
Q ss_pred CCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcc
Q 042446 240 HGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG 290 (445)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 290 (445)
.+..+ +. .+++|++|++++|.+++ ++ .+..+++|+.|++++|.+.+
T Consensus 169 ~~~~~--l~-~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LA-GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GT-TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hc-CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 42211 22 25555555555555543 22 35556666666666666543
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=6e-17 Score=140.27 Aligned_cols=151 Identities=23% Similarity=0.237 Sum_probs=115.4
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCcccccCC-ccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCC
Q 042446 63 ALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIP-PEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQN 141 (445)
Q Consensus 63 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~ 141 (445)
.++++++.++ .+|..+. ..+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5677777776 3565443 456889999998886644 45788888888888888888766777888888888888888
Q ss_pred cCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCc
Q 042446 142 KLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 216 (445)
.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888666666888888888888888888777777777777888888777777666677777777777777777665
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=6.5e-17 Score=140.04 Aligned_cols=152 Identities=17% Similarity=0.159 Sum_probs=112.5
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCC-ccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIP-ANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHK 164 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (445)
+.++++++.++ .+|..+ ...+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57888888876 456544 3456788888888875544 3467788888888888888766666777888888888888
Q ss_pred ccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 165 NNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 165 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8877666666777778888888888777666777777777788888777777666777777777777777777665
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=1.5e-16 Score=138.79 Aligned_cols=153 Identities=22% Similarity=0.214 Sum_probs=112.3
Q ss_pred CCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccc
Q 042446 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHK 164 (445)
Q Consensus 85 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (445)
-+.++++++.++ .+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467788777776 5555443 7788888888888877777788888888888888888754555667788888888888
Q ss_pred ccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCC
Q 042446 165 NNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 165 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 241 (445)
|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 8877666666677777888888777777 566777777777777777777774444556667777777777776653
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=4.8e-17 Score=161.28 Aligned_cols=174 Identities=22% Similarity=0.339 Sum_probs=139.2
Q ss_pred CcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCC
Q 042446 223 ICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNL 302 (445)
Q Consensus 223 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 302 (445)
+..+++|+.|++++|.+. .++. +.. +++|+.|++++|.+.+..+ +..+++|+.|+|++|.+.+. ..+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-~l~~-l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-CCTT-GGG-CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred hhcCCCCCEEECcCCCCC-CChH-Hcc-CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence 356788999999999886 4543 443 8999999999999886443 88899999999999988753 368889999
Q ss_pred CEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCC
Q 042446 303 SHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLY 382 (445)
Q Consensus 303 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 382 (445)
+.|++++|.+... ..+..+++|+.|+|++|.+.+. ..+..++ +|++|+|++|.+++..| +..+++|+
T Consensus 112 ~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 112 KSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSRLT-KLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp CEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCCCC--GGGGSCT-TCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred CEEEecCCCCCCC--------ccccCCCccCEEECCCCccCCc--hhhcccC-CCCEEECcCCcCCCchh--hccCCCCC
Confidence 9999999988663 2577889999999999988743 4556665 89999999999886544 78889999
Q ss_pred eeeCccCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 383 LLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 383 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
.|+|++|.+.+ + ..+..+++|+.|+|++|++.+.
T Consensus 179 ~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 179 NLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred EEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 99999998874 3 3578889999999999988754
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=3.4e-17 Score=153.17 Aligned_cols=175 Identities=23% Similarity=0.258 Sum_probs=119.5
Q ss_pred cEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCc-CCCCCCEEECccCcCcccCcccccCCCCCCEEEcc
Q 042446 230 VNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLS-NASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQ 308 (445)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 308 (445)
+.++++++.+. .+|..+ .+.++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56777777776 566654 45678888888888766666666 77888888888888877766777778888888888
Q ss_pred CCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCcc-c---cCccCCCee
Q 042446 309 SSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSG-I---GNLVNLYLL 384 (445)
Q Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~---~~~~~L~~L 384 (445)
+|++..... ..+..+++|+.|++++|.+++..+..+..+. +|++|++++|.++. +|.. + ..+++|+.|
T Consensus 97 ~N~l~~~~~------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 97 SNHLHTLDE------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQNQISR-FPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp SSCCCEECT------TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCS-CCGGGTC----CTTCCEE
T ss_pred CCcCCcCCH------HHhCCCcCCCEEECCCCcccEECHHHhCCcc-cCCEEECCCCcCCe-eCHHHhcCcccCCcCCEE
Confidence 887765322 2456677777777777777765566666665 77777777777763 3333 3 456777777
Q ss_pred eCccCcceecCChhhhCCCC--CCeEEccCCccc
Q 042446 385 AMEQNQFIGTIPQEMGKLLN--LQGLDFGGNHFS 416 (445)
Q Consensus 385 ~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~i~ 416 (445)
++++|.+.+..+..+..++. ++.|+|++|++.
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 77777776433355666665 366777777665
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.1e-17 Score=140.78 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=41.1
Q ss_pred CCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 042446 82 LSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLS 161 (445)
Q Consensus 82 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (445)
+++|++|+++++.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444443 222 3444444444444444332 112333444444444444444333333333444444444
Q ss_pred cccccCCCCCCccCCCCCCcceEeeccc
Q 042446 162 LHKNNLTGGISPFLGNLTFLELVSLSYN 189 (445)
Q Consensus 162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 189 (445)
+++|.+.+..+..+..+++|++|++++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 146 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYN 146 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence 4444333322333333333333333333
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=6.1e-17 Score=151.45 Aligned_cols=175 Identities=21% Similarity=0.203 Sum_probs=115.8
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCc-CCCCCCEEEccCCcCcccCCccccCCCCCCEEeccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLS-YCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHK 164 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (445)
+.++++++.++ .+|..+. ..++.|++++|.+++..+..+. ++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57788887776 5555433 4577888888888766666666 778888888888888766666777788888888888
Q ss_pred ccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCcc-C---cCCCCCcEEEccCCcCC
Q 042446 165 NNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPS-I---CNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 165 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l---~~l~~L~~L~l~~~~~~ 240 (445)
|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.++ .+|.. + ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 8777665666777777777777777777666667777777777777777776 33333 2 34666666666666665
Q ss_pred CCCCcccccCCCC--ccEEEccCCcCc
Q 042446 241 GSLPSCLGLNFPN--LKFFQIDQNFFT 265 (445)
Q Consensus 241 ~~~~~~~~~~~~~--L~~L~l~~~~~~ 265 (445)
.++......++. ++.|++.+|.+.
T Consensus 177 -~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 -KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -ccCHHHhhhccHhhcceEEecCCCcc
Confidence 333222222443 245555555443
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=1e-18 Score=177.61 Aligned_cols=233 Identities=19% Similarity=0.183 Sum_probs=122.8
Q ss_pred ChhhHHHHHHHHHhccCCCCCCCCCCCCC-CCCcceeeeEeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEEC---
Q 042446 15 EEGDRAALQAFKSMIAHDPQRILNSWNDS-RHFCEWDGVTCGRRHRRVIALDLMSKALSGSLSPHIGNLSFLREINL--- 90 (445)
Q Consensus 15 ~~~~~~~~~~l~~~~~~~~~~~~~~w~~~-~~~c~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L--- 90 (445)
...+++++.++..+...+.+.....|... .....|.+..+.. .+++.+++.++.+.. .+..+.....|+.+.+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~ 206 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDED 206 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccCc
Confidence 34666777888777766666666667443 4566787777666 679999998888864 3433333333333332
Q ss_pred --CCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCC
Q 042446 91 --MDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLT 168 (445)
Q Consensus 91 --~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (445)
..+.+. ..++.+..+..|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..|.++++|++|++++|.+.
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 223333 45667788888999999998888 67777778888999999988888 77888888888999999888888
Q ss_pred CCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCC-CcEEEccCCcCCCCCCccc
Q 042446 169 GGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSF-LVNFSVSQNQIHGSLPSCL 247 (445)
Q Consensus 169 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~ 247 (445)
.+|..+..+++|++|++++|.+. .+|..|+++++|++|++++|.+.+.+|..+..+.. ...+++++|.+.+.+|.
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 66888888888888888888887 67777888888888888888888666666544321 22366777777655543
Q ss_pred ccCCCCccEEEccCC
Q 042446 248 GLNFPNLKFFQIDQN 262 (445)
Q Consensus 248 ~~~~~~L~~L~l~~~ 262 (445)
.|+.|+++.|
T Consensus 360 -----~l~~l~l~~n 369 (727)
T 4b8c_D 360 -----ERRFIEINTD 369 (727)
T ss_dssp -----C---------
T ss_pred -----ccceeEeecc
Confidence 4555666655
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=9.9e-17 Score=159.02 Aligned_cols=190 Identities=21% Similarity=0.344 Sum_probs=154.0
Q ss_pred cceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEcc
Q 042446 181 LELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQID 260 (445)
Q Consensus 181 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (445)
+..+.+..+.+.... .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+ ++. +. .+++|+.|+++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~-~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LT-NLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GG-GCTTCCEEECC
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hc-cCCCCCEEECc
Confidence 344444544444222 2456789999999999987 444 58889999999999999984 443 44 49999999999
Q ss_pred CCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCC
Q 042446 261 QNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRN 340 (445)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 340 (445)
+|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|
T Consensus 96 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 96 ENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp SSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECCSS
T ss_pred CCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECcCC
Confidence 999985 3 3789999999999999999764 4688999999999999998763 36789999999999999
Q ss_pred cceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceec
Q 042446 341 QFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGT 394 (445)
Q Consensus 341 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 394 (445)
.+.+..+ +..++ +|++|+|++|.+++ + ..+..+++|+.|+|++|.+.+.
T Consensus 164 ~l~~~~~--l~~l~-~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 164 QISDIVP--LAGLT-KLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCCCGG--GTTCT-TCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCchh--hccCC-CCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 9986555 66666 99999999999985 3 4588899999999999998843
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.7e-17 Score=144.45 Aligned_cols=170 Identities=18% Similarity=0.285 Sum_probs=117.8
Q ss_pred CCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEE
Q 042446 226 LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHL 305 (445)
Q Consensus 226 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 305 (445)
+..+..++++.+.+. .++ .+.. +++|++|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~~-l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQKE-LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHHH-HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcc-ccc-chhh-cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 344566667777665 333 2333 7788888888888774 33 57778888888888888775544 7788888888
Q ss_pred EccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeee
Q 042446 306 ILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLA 385 (445)
Q Consensus 306 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 385 (445)
++++|++...+. +.. ++|++|++++|.+++ ++ .+..++ +|++|++++|++++ ++ .+..+++|+.|+
T Consensus 91 ~L~~N~l~~l~~--------~~~-~~L~~L~L~~N~l~~-~~-~l~~l~-~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 91 SVNRNRLKNLNG--------IPS-ACLSRLFLDNNELRD-TD-SLIHLK-NLEILSIRNNKLKS-IV-MLGFLSKLEVLD 156 (263)
T ss_dssp ECCSSCCSCCTT--------CCC-SSCCEEECCSSCCSB-SG-GGTTCT-TCCEEECTTSCCCB-CG-GGGGCTTCCEEE
T ss_pred ECCCCccCCcCc--------ccc-CcccEEEccCCccCC-Ch-hhcCcc-cccEEECCCCcCCC-Ch-HHccCCCCCEEE
Confidence 888887766431 122 778888888887764 32 355555 78888888888774 33 567777888888
Q ss_pred CccCcceecCChhhhCCCCCCeEEccCCccccc
Q 042446 386 MEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGK 418 (445)
Q Consensus 386 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 418 (445)
+++|.+.+. ..+..+++|+.|++++|++.+.
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 888877744 5567777888888888877644
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=1.3e-15 Score=135.74 Aligned_cols=150 Identities=22% Similarity=0.285 Sum_probs=70.7
Q ss_pred ccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcc
Q 042446 103 FGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLE 182 (445)
Q Consensus 103 ~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 182 (445)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ ++. +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCC
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCc-ccc-Cccc
Confidence 344444444444444444 222 344444444444444444422 21 4444445555555444442 111 111 4555
Q ss_pred eEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCC
Q 042446 183 LVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQN 262 (445)
Q Consensus 183 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (445)
+|++++|.+++ + ..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+.+. ..+. .+++|+.|++++|
T Consensus 110 ~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~-~l~~L~~L~l~~N 182 (263)
T 1xeu_A 110 RLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLT-RLKKVNWIDLTGQ 182 (263)
T ss_dssp EEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTST-TCCCCCEEEEEEE
T ss_pred EEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhc-cCCCCCEEeCCCC
Confidence 55555555542 1 235555555555555555552 22 445555555666655555432 2222 2566666666666
Q ss_pred cCcc
Q 042446 263 FFTG 266 (445)
Q Consensus 263 ~~~~ 266 (445)
.+..
T Consensus 183 ~~~~ 186 (263)
T 1xeu_A 183 KCVN 186 (263)
T ss_dssp EEEC
T ss_pred cccC
Confidence 5553
No 118
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=3.2e-14 Score=134.66 Aligned_cols=331 Identities=15% Similarity=0.044 Sum_probs=204.6
Q ss_pred ccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCC
Q 042446 75 LSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFL 154 (445)
Q Consensus 75 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 154 (445)
-..++.++.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....++.++.+|+.+.+..+ +......+|..+
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 3446677888888888643 55456667888888888888654 55455567778888887766554 332444456555
Q ss_pred CCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEc
Q 042446 155 YKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSV 234 (445)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 234 (445)
..++....... .......|.++.+|+.+.+..+. ......+|..+.+|+.+.+..+ ++......+..+..|+.+.+
T Consensus 140 ~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 140 DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 44333322222 11234557778888888886543 2244566777788888877654 43344556667777777766
Q ss_pred cCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCC
Q 042446 235 SQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGS 314 (445)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 314 (445)
..+.. .+...... ...|+.+.+... ++......+..+..++.+.+..+.. ......|..++.++.+......+..
T Consensus 216 ~~~~~--~i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~ 290 (394)
T 4fs7_A 216 PNSLY--YLGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE 290 (394)
T ss_dssp CTTCC--EECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT
T ss_pred CCCce--Eeehhhcc-cCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecc
Confidence 55432 12222222 567777777543 2323345567778888888876643 3555667778888877776554322
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceec
Q 042446 315 GESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGT 394 (445)
Q Consensus 315 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 394 (445)
..+..|.+|+.+.+..+ ++.....++.... +|+.+++..+ ++.....+|.+|.+|+.+.+..+ +...
T Consensus 291 ---------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 291 ---------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp ---------TTTTTCTTCCEEEECTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred ---------ccccccccccccccccc-cceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence 14567788888888654 3322233344444 7888877543 44344566777888888888665 5544
Q ss_pred CChhhhCCCCCCeEEccCCcccccccccccCCCCCCeE
Q 042446 395 IPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEI 432 (445)
Q Consensus 395 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l 432 (445)
-..+|.+|++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 358 ~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 5567778888888888654 22 234567777777664
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.1e-18 Score=172.14 Aligned_cols=179 Identities=17% Similarity=0.201 Sum_probs=88.3
Q ss_pred cCCCCCCEEEccCCcCcccCCccccCCCCCCEEeccccc-------------CCCCCCccCCCCCCcceEe-eccccccc
Q 042446 128 SYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNN-------------LTGGISPFLGNLTFLELVS-LSYNSFEG 193 (445)
Q Consensus 128 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~~ 193 (445)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34556666666666655 555556666666666654442 2233444455555555555 33332210
Q ss_pred ccCc------ccCC--CCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCc
Q 042446 194 NIPD------SLGQ--LKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFT 265 (445)
Q Consensus 194 ~~~~------~l~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (445)
++. .+.. ...|+.|++++|.++ .+|. +..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhc-CCCCCEEECCCCCCC
Confidence 000 0000 013566666666665 3443 555555666666655555 45544443 555555555555555
Q ss_pred ccCcccCcCCCCCCEEECccCcCcccC-cccccCCCCCCEEEccCCcCCC
Q 042446 266 GSIPVSLSNASKLEVIQIANNSFSGKF-SVNFGGMKNLSHLILQSSNLGS 314 (445)
Q Consensus 266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~ 314 (445)
+ +| .+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+..
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 3 33 4555555555555555554443 4444445555555555444433
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1.1e-15 Score=140.95 Aligned_cols=269 Identities=14% Similarity=0.047 Sum_probs=160.6
Q ss_pred CCCCCEEecccccCCCCCCccCCC-CCCcceEeecccccc--cccCcccCCCCCCCEEEccCCCCcccCCccCcC-----
Q 042446 154 LYKLKGLSLHKNNLTGGISPFLGN-LTFLELVSLSYNSFE--GNIPDSLGQLKELKSLAIGVNNLSGKIPPSICN----- 225 (445)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~----- 225 (445)
+.+++.|.++++--. .....+.. +++|+.|++++|.+. ..... .++.++.+.+..+.+. ...|..
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhccccccc
Confidence 456788887764211 11112222 677888888888776 22211 1222344444444332 344555
Q ss_pred ---CCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCc----CcccCcccccC
Q 042446 226 ---LSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNS----FSGKFSVNFGG 298 (445)
Q Consensus 226 ---l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~l~~ 298 (445)
+++|+.+++.. .+. .++...+.++++|+.+++.+|.+....+..+..+.++..+...... ........|..
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 78888888877 555 5665555568888888888887776666677777777766665521 11222334455
Q ss_pred CCCCC-EEEccCCcCCCC-------CCC------------CCcccccccCCCCCcEEEccCCcceecCChhhhhccccCc
Q 042446 299 MKNLS-HLILQSSNLGSG-------ESD------------EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQ 358 (445)
Q Consensus 299 ~~~L~-~L~l~~~~~~~~-------~~~------------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 358 (445)
+..|+ .+.+........ ... ...+......|++|+.+++++|.++......+..+. +|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~-~L~ 253 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK-YLL 253 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-TCC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-CCC
Confidence 55555 333322110000 000 000000011378888888888877733334444454 888
Q ss_pred EEEcccCcccccCCccccCccCCC-eeeCccCcceecCChhhhCCCCCCeEEccCCcccccccccccCCCCCCeEEc
Q 042446 359 VLFLGFNQLYGSIPSGIGNLVNLY-LLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVL 434 (445)
Q Consensus 359 ~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l 434 (445)
++++.+| ++.....+|.+|++|+ .+.+.+ .+....+.+|.+|++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8888877 6545566778888888 888877 566555678888888888888888888666678888888888764
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=1.1e-13 Score=130.50 Aligned_cols=213 Identities=17% Similarity=0.134 Sum_probs=92.0
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (445)
..++.+.+.+. ++.....+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+......+|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 44555555442 332333444443 4556655443 443344445442 455555554 333334445555555555555
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCC
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGS 242 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 242 (445)
.+|.+.......|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++......|.. .+|+.+.+..+ +. .
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~-~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VT-N 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CC-E
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-cc-E
Confidence 55555433333333 355555555432 33333445555555555555432 22122223333 44555444221 22 2
Q ss_pred CCcccccCCCCccEEEccCCcCc-----ccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEc
Q 042446 243 LPSCLGLNFPNLKFFQIDQNFFT-----GSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLIL 307 (445)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 307 (445)
++...+..+++|+.+.+.++.+. ......+..|++|+.+.+.. .+.......|..|++|+.+.+
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 32333333444444444443322 12223344444444444442 233333334444444444444
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.1e-15 Score=124.81 Aligned_cols=133 Identities=23% Similarity=0.184 Sum_probs=80.3
Q ss_pred CCCCCEEECCCCccc-ccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEE
Q 042446 82 LSFLREINLMDNTIQ-GEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGL 160 (445)
Q Consensus 82 l~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 160 (445)
.++|++|++++|.++ +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356677777777665 45566666666777777777766633 556666677777777776664455555556666666
Q ss_pred ecccccCCCCC-CccCCCCCCcceEeecccccccccC---cccCCCCCCCEEEccCCCCc
Q 042446 161 SLHKNNLTGGI-SPFLGNLTFLELVSLSYNSFEGNIP---DSLGQLKELKSLAIGVNNLS 216 (445)
Q Consensus 161 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~n~~~ 216 (445)
++++|.+.+.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666665321 1445556666666666666553322 24555666666666655554
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=8.3e-15 Score=123.90 Aligned_cols=125 Identities=29% Similarity=0.329 Sum_probs=60.3
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCc-cccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPP-EFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
++++++.+. .+|..+.. ++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 13 l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 13 VDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 444444443 33433322 555555555555533332 24555555555555555554445555555555555555555
Q ss_pred CcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccccc
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSF 191 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 191 (445)
+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 5544444444444454444444444444444444444444444444433
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=3.2e-15 Score=137.94 Aligned_cols=245 Identities=14% Similarity=0.100 Sum_probs=136.3
Q ss_pred CCCCCEEECCCCccc--c------------------cCCccccC--------CCCCCEEECCCCcCCCCCCccCcCCCCC
Q 042446 82 LSFLREINLMDNTIQ--G------------------EIPPEFGR--------LFRLEALFLANNSLVGKIPANLSYCSRL 133 (445)
Q Consensus 82 l~~L~~L~L~~~~~~--~------------------~~~~~~~~--------~~~L~~L~l~~~~i~~~~p~~l~~l~~L 133 (445)
+++|++|+|++|.+. . ....+|.+ +++|+.+++.+ .++...+.+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 677888888877766 1 11223344 55555555555 4443444445555555
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEeccccc----CCCCCCccCCCCCCcc-eEeeccccc-ccccCcccCCCCCCCE
Q 042446 134 TVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNN----LTGGISPFLGNLTFLE-LVSLSYNSF-EGNIPDSLGQLKELKS 207 (445)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~~~~L~-~L~l~~~~~-~~~~~~~l~~l~~L~~ 207 (445)
+.+++++|.+....+.+|..+.++..+...... ........+.++..|+ .+.+..... .......-....+++.
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 555555555443444445544444444433311 1111112223333333 222221110 0000000112334445
Q ss_pred EEccCCCCcccCCccC-cCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCC-EEECcc
Q 042446 208 LAIGVNNLSGKIPPSI-CNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLE-VIQIAN 285 (445)
Q Consensus 208 L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~ 285 (445)
+.+.++-.. .....+ ..+++|+.+++..|.+. .++...+.++++|+++++.++ +.......+..+++|+ .+.+.+
T Consensus 207 l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 207 LTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred EEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 554443211 111111 13678888888888776 677766667888888888876 6666667788888888 888887
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEc
Q 042446 286 NSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSF 337 (445)
Q Consensus 286 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 337 (445)
.++.+...+|..|++|++++++.+.+..+... ++.+|++|+.+..
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~------aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE------LFGNGVPSKLIYK 328 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTT------TTCTTCCCCEEEC
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchh------hhcCCcchhhhcc
Confidence 66667778888888888888888887765433 6778888888753
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=1.7e-14 Score=121.91 Aligned_cols=128 Identities=23% Similarity=0.239 Sum_probs=65.7
Q ss_pred CEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCc-cccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecc
Q 042446 110 EALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPF-EFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSY 188 (445)
Q Consensus 110 ~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 188 (445)
++++++++.++ .+|..+. .+|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34444444443 3333322 1445555555544433222 244555555555555555544445555555555555555
Q ss_pred cccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCC
Q 042446 189 NSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIH 240 (445)
Q Consensus 189 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 240 (445)
|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5555444445555566666666666665555555555666666666666554
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=8.2e-18 Score=165.77 Aligned_cols=210 Identities=18% Similarity=0.124 Sum_probs=136.5
Q ss_pred CCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCC
Q 042446 200 GQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLE 279 (445)
Q Consensus 200 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (445)
...+.|+.|++++|.+. .+|..+..+++|+.|++++|.....++... ..+...+..|..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll------------~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM------------RALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------HHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH------------HhcccccCCHHHHHHHHhcc
Confidence 45677777777777776 667777777777777765543100000000 00112223444555555555
Q ss_pred EEE-CccCcCcccCcc-----ccc--CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhh
Q 042446 280 VIQ-IANNSFSGKFSV-----NFG--GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSIT 351 (445)
Q Consensus 280 ~L~-l~~~~~~~~~~~-----~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 351 (445)
.|+ ++.|.+.+.... .+. ....|+.|++++|.+... +. +..+++|+.|++++|.++ .+|..+.
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-------p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-------CH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-------CC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred cCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-------cC-ccccccCcEeecCccccc-ccchhhh
Confidence 555 343322211000 000 012588888888887652 33 677888888888888887 7788787
Q ss_pred hccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecC-ChhhhCCCCCCeEEccCCcccccccc---cccCCC
Q 042446 352 NLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTI-PQEMGKLLNLQGLDFGGNHFSGKIPS---TLGNLS 427 (445)
Q Consensus 352 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~---~l~~l~ 427 (445)
.++ +|++|++++|.+++ +| .+..+++|+.|++++|.+.+.. |..+..+++|+.|+|++|++++..+. .+..+|
T Consensus 484 ~l~-~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 484 ALR-CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp GCT-TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred cCC-CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 776 88999999888885 56 7888888999999998888665 88888889999999999988855442 234478
Q ss_pred CCCeEEc
Q 042446 428 SLSEIVL 434 (445)
Q Consensus 428 ~L~~l~l 434 (445)
+|+.|++
T Consensus 561 ~L~~L~l 567 (567)
T 1dce_A 561 SVSSILT 567 (567)
T ss_dssp TCSEEEC
T ss_pred ccCccCC
Confidence 8888764
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.7e-15 Score=123.34 Aligned_cols=133 Identities=22% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCCCCEEECccCcCc-ccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc
Q 042446 275 ASKLEVIQIANNSFS-GKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL 353 (445)
Q Consensus 275 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 353 (445)
.++|++|++++|.+. +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+++.+|..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 356777777776665 34444456666666666666665442 234555566666666665554344433334
Q ss_pred cccCcEEEcccCccccc-CCccccCccCCCeeeCccCcceecCC---hhhhCCCCCCeEEccCCccc
Q 042446 354 SSQLQVLFLGFNQLYGS-IPSGIGNLVNLYLLAMEQNQFIGTIP---QEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 354 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~i~ 416 (445)
+ +|++|++++|.+++. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 95 ~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 95 P-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp T-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred C-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 3 555555555555431 11344444555555555554442222 23444444555544444443
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=6e-16 Score=157.25 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=94.3
Q ss_pred cCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCccccc
Q 042446 218 KIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFG 297 (445)
Q Consensus 218 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 297 (445)
..+..+..++.|+.|++++|.+. .++..++. +++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .++..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 34555566666667777666665 55555553 677777777777766 56666777777777777777776 4466677
Q ss_pred CCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccC
Q 042446 298 GMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGN 377 (445)
Q Consensus 298 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 377 (445)
.+++|++|++++|.+.. ++..+..+++|+.|+|++|.+++.+|..+......+..+++++|.+++..|.
T Consensus 291 ~l~~L~~L~L~~N~l~~-------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---- 359 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTT-------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---- 359 (727)
T ss_dssp GGTTCSEEECCSSCCCC-------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----
T ss_pred CCCCCCEEECCCCCCCc-------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc----
Confidence 77777777777777654 3445677777888888888777666666654332334466777777765554
Q ss_pred ccCCCeeeCccC--------cceecCChhhhCCCCCCeEEccCCccc
Q 042446 378 LVNLYLLAMEQN--------QFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 378 ~~~L~~L~l~~n--------~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
.|+.|+++.| .+.+..+..+..+..+....+++|-+.
T Consensus 360 --~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 --ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --C-----------------------------------------CCC
T ss_pred --ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3444555554 222222233334444455555555543
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=2.8e-13 Score=127.72 Aligned_cols=249 Identities=11% Similarity=0.094 Sum_probs=192.5
Q ss_pred cccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCC
Q 042446 76 SPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLY 155 (445)
Q Consensus 76 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 155 (445)
..++..+ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+....+.+|.+|++|+.+++.+|.+.......|. +.
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 3455554 7999999876 665666778775 799999987 67766778899999999999999988855555565 68
Q ss_pred CCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEcc
Q 042446 156 KLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVS 235 (445)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (445)
+|+.+.+..+ +.......|.++++|+.+.+..+ +......+|.+ .+|+.+.+. +.++......|..+++|+.+.+.
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 9999999854 55566778999999999999875 55455667777 899999995 55665667888999999999998
Q ss_pred CCcCC----CCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCc
Q 042446 236 QNQIH----GSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSN 311 (445)
Q Consensus 236 ~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 311 (445)
.+.+. ..++...+.++++|+.+.+.. .+.......+..|++|+.+.+..+ +......+|..+ +|+++.+.++.
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 87653 135666666799999999984 477666778899999999999665 666777889999 99999999987
Q ss_pred CCCCCCCCCcccccccCCC-CCcEEEccCCcc
Q 042446 312 LGSGESDEMGFINSLANCS-KLRVLSFGRNQF 342 (445)
Q Consensus 312 ~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~ 342 (445)
....... .+.+++ +++.|.+..+..
T Consensus 357 ~~~l~~~------~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 357 PPQVFEK------VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCBCCCS------SCCCSCTTCCEEEECGGGH
T ss_pred Ccccccc------cccCCCCCccEEEeCHHHH
Confidence 7654332 344553 677888776654
No 130
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=2.4e-13 Score=128.66 Aligned_cols=318 Identities=12% Similarity=0.068 Sum_probs=224.1
Q ss_pred ccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccccCCCCCCcc
Q 042446 95 IQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPF 174 (445)
Q Consensus 95 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 174 (445)
++.....+|.++.+|+.+.+.. .++.....+|.+|.+|+.+++.++ +......+|.++.+|+.+.+..+ +.......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 4545667899999999999975 476566778999999999999765 44355667889999998877654 23233445
Q ss_pred CCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCc
Q 042446 175 LGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNL 254 (445)
Q Consensus 175 l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 254 (445)
+..+..+....... .......+|.++++|+.+.+..+. .......+..+.+|+.+.+..+ +. .+....+..+..|
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L 210 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILL 210 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTC
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhcccccc
Confidence 55555433333222 222345678899999999997654 3255667788899999988765 22 4555555568888
Q ss_pred cEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcE
Q 042446 255 KFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRV 334 (445)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 334 (445)
+.+.+..+... +.........|+.+.+... +.......+..+..++.+.+..+...- . ...+..+..++.
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i-~------~~~F~~~~~l~~ 280 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRI-G------GSLFYNCSGLKK 280 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEE-C------SCTTTTCTTCCE
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCccee-e------ccccccccccce
Confidence 88887665432 2334455678999988754 334556678899999999987764321 1 125678888999
Q ss_pred EEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCc
Q 042446 335 LSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNH 414 (445)
Q Consensus 335 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 414 (445)
+......+. ...+... .+|+++.+..+ ++.....++.+|.+|+.+.+.++ +...-..+|.+|++|+.+++..+
T Consensus 281 ~~~~~~~i~---~~~F~~~-~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 281 VIYGSVIVP---EKTFYGC-SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS- 353 (394)
T ss_dssp EEECSSEEC---TTTTTTC-TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred eccCceeec---ccccccc-ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-
Confidence 888765432 1223334 48999999765 44345667889999999999754 55455688999999999999877
Q ss_pred ccccccccccCCCCCCeEEccCC
Q 042446 415 FSGKIPSTLGNLSSLSEIVLSNN 437 (445)
Q Consensus 415 i~~~~~~~l~~l~~L~~l~l~~n 437 (445)
++.....+|.+|++|+++++..+
T Consensus 354 l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEehHHHhhCCCCCCEEEECCC
Confidence 66456689999999999999654
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=2.7e-15 Score=121.44 Aligned_cols=127 Identities=22% Similarity=0.152 Sum_probs=73.6
Q ss_pred CCCCEEECCCCccc-ccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 042446 83 SFLREINLMDNTIQ-GEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLS 161 (445)
Q Consensus 83 ~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (445)
++|++|++++|.++ +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 45555566666666666666666633 4556666666666666666644555555566666666
Q ss_pred cccccCCCC-CCccCCCCCCcceEeecccccccccC---cccCCCCCCCEEEcc
Q 042446 162 LHKNNLTGG-ISPFLGNLTFLELVSLSYNSFEGNIP---DSLGQLKELKSLAIG 211 (445)
Q Consensus 162 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 211 (445)
+++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666665532 22445555556666665555553322 244555555555543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.8e-14 Score=119.78 Aligned_cols=124 Identities=25% Similarity=0.256 Sum_probs=70.8
Q ss_pred EEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcC
Q 042446 64 LDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKL 143 (445)
Q Consensus 64 l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~ 143 (445)
++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 455555554 3443332 45666666666665 5556666666666666666666655555566666666666666666
Q ss_pred cccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeeccccc
Q 042446 144 VGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSF 191 (445)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 191 (445)
+...+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 654445555556666666666555533333444444555555444443
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=1.6e-14 Score=116.86 Aligned_cols=126 Identities=21% Similarity=0.158 Sum_probs=57.1
Q ss_pred CCCCEEECccCcCc-ccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhcc
Q 042446 276 SKLEVIQIANNSFS-GKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLS 354 (445)
Q Consensus 276 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 354 (445)
++|++|++++|.+. +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+++.+|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 34555555555554 33344444555555555555544332 2344455555555555555433333333333
Q ss_pred ccCcEEEcccCccccc-CCccccCccCCCeeeCccCcceecCC---hhhhCCCCCCeEEc
Q 042446 355 SQLQVLFLGFNQLYGS-IPSGIGNLVNLYLLAMEQNQFIGTIP---QEMGKLLNLQGLDF 410 (445)
Q Consensus 355 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l 410 (445)
+|++|++++|.+++. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++
T Consensus 89 -~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 -NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp -TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred -CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 455555555554431 12334444444444444444442222 23444444444444
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=1.2e-13 Score=116.74 Aligned_cols=126 Identities=25% Similarity=0.303 Sum_probs=66.8
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
++++++++.++ .+|..+ .++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666655 444332 245666666666655 45555555666666666666555444445555555555555555
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCC
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNL 215 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 215 (445)
.+.+..+..+..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55544444455555555555555555533333344445555555544444
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=1.6e-13 Score=114.49 Aligned_cols=110 Identities=27% Similarity=0.269 Sum_probs=64.6
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEec
Q 042446 83 SFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSL 162 (445)
Q Consensus 83 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (445)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 56677777777666444445566666777777766666544455566666666666666666444444555666666666
Q ss_pred ccccCCCCCCccCCCCCCcceEeecccccc
Q 042446 163 HKNNLTGGISPFLGNLTFLELVSLSYNSFE 192 (445)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 192 (445)
++|.+.+..+..+..+++|++|++++|.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 666555433333444555555555555444
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=2.7e-13 Score=113.09 Aligned_cols=127 Identities=24% Similarity=0.216 Sum_probs=59.0
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
+.++++++.++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555555554 333222 245555555555555444444455555555555555555333333445555555555555
Q ss_pred cCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCC
Q 042446 166 NLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNL 215 (445)
Q Consensus 166 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 215 (445)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 54433333344444444444444444422222233344444444444433
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=6e-14 Score=116.89 Aligned_cols=133 Identities=15% Similarity=0.183 Sum_probs=94.1
Q ss_pred cCcCCCCCCEEECccCcCcccCcccccCC-CCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChh
Q 042446 271 SLSNASKLEVIQIANNSFSGKFSVNFGGM-KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHS 349 (445)
Q Consensus 271 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 349 (445)
.+..+++|++|++++|.+... +. +..+ ++|++|++++|.+... ..+..+++|++|++++|.+++..+..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--------DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--------CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--------cccccCCCCCEEECCCCcccccCcch
Confidence 345677888888888888744 33 4444 4888888888887652 35677788888888888887443333
Q ss_pred hhhccccCcEEEcccCcccccCCc--cccCccCCCeeeCccCcceecCCh----hhhCCCCCCeEEccCCccc
Q 042446 350 ITNLSSQLQVLFLGFNQLYGSIPS--GIGNLVNLYLLAMEQNQFIGTIPQ----EMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 350 ~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~i~ 416 (445)
+..++ +|++|++++|.++ .+|. .+..+++|+.|++++|.+. .+|. .+..+++|+.|++++|...
T Consensus 84 ~~~l~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 84 DQALP-DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHCT-TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhcCC-CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 35555 7888888888876 4454 5677788888888888776 4554 3777788888888877765
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.3e-15 Score=129.67 Aligned_cols=152 Identities=23% Similarity=0.348 Sum_probs=103.8
Q ss_pred CCCCEEECccCcCcccCcc------cccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChh
Q 042446 276 SKLEVIQIANNSFSGKFSV------NFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHS 349 (445)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 349 (445)
+.++.++++++.+.+..+. .+..+++|++|++++|.+... + .+..+++|+.|++++|.++ .+|..
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-------~-~~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-------S-SLSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-------C-CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-------c-ccccCCCCCEEECCCCCcc-cccch
Confidence 3444444444444433333 566777777777777776552 2 5667788888888888777 56665
Q ss_pred hhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCC-hhhhCCCCCCeEEccCCcccccccc-------
Q 042446 350 ITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIP-QEMGKLLNLQGLDFGGNHFSGKIPS------- 421 (445)
Q Consensus 350 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~------- 421 (445)
+..++ +|++|++++|.+++ +| .+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++.+.+|.
T Consensus 89 ~~~~~-~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 89 DAVAD-TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHH-HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hhcCC-cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 55555 78888888888874 34 57778888888888888773222 4677888888888888888765443
Q ss_pred ---cccCCCCCCeEEccCCccee
Q 042446 422 ---TLGNLSSLSEIVLSNNNLSG 441 (445)
Q Consensus 422 ---~l~~l~~L~~l~l~~n~~~~ 441 (445)
.+..+++|+.|+ +|+++.
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHhCCCcEEEC--CcccCH
Confidence 367788888875 666653
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=2.4e-13 Score=113.25 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCC
Q 042446 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCS 330 (445)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 330 (445)
+++|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+..... ..+..++
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~ 88 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE------GLDQALP 88 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS------CHHHHCT
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc------chhhcCC
Confidence 5556666666665553 232222223566666666665543 445556666666666665544211 1224555
Q ss_pred CCcEEEccCCcceecCCh--hhhhccccCcEEEcccCcccccCCcc----ccCccCCCeeeCccCcce
Q 042446 331 KLRVLSFGRNQFRGVLPH--SITNLSSQLQVLFLGFNQLYGSIPSG----IGNLVNLYLLAMEQNQFI 392 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~ 392 (445)
+|++|++++|.+. .++. .+..++ +|++|++++|+++ ..|.. +..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~-~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLK-SLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCT-TCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCC-CCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666666554 3333 344443 5666666666655 33332 555566666666655443
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=5.5e-11 Score=112.39 Aligned_cols=322 Identities=11% Similarity=0.126 Sum_probs=155.4
Q ss_pred CCEEECCCCcccccCCccccCCCCCCEEECCCC---cCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEe
Q 042446 85 LREINLMDNTIQGEIPPEFGRLFRLEALFLANN---SLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLS 161 (445)
Q Consensus 85 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~---~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (445)
|+.+.+... ++.....+|.++.+|+.+.+..+ .++.....+|..+.+|+.+.+..+ ++......|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 556665543 33344455566666666655443 233333445555555555554433 2223333455555555555
Q ss_pred cccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCC
Q 042446 162 LHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHG 241 (445)
Q Consensus 162 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 241 (445)
+..+. .......+..+..|+.+.+..+ +......+|. ...|+.+.+..+... .....+..+..++..........
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~- 218 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYP- 218 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC-
T ss_pred cccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccc-
Confidence 54321 1122334455555555555433 2212223332 234555555432221 33334444445544443332221
Q ss_pred CCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCc
Q 042446 242 SLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMG 321 (445)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 321 (445)
.....+.. .+...............+..+.+... +......+|..+.+|+.+.+...... +.
T Consensus 219 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~----- 280 (394)
T 4gt6_A 219 AIDNVLYE-----------KSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IG----- 280 (394)
T ss_dssp BSSSCEEE-----------ECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-EC-----
T ss_pred cccceeec-----------ccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce-ec-----
Confidence 11111100 00000000011122334445554332 33344556777778887777554221 11
Q ss_pred ccccccCCCCCcEEEccCCcceecCCh-hhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhh
Q 042446 322 FINSLANCSKLRVLSFGRNQFRGVLPH-SITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMG 400 (445)
Q Consensus 322 ~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 400 (445)
..++..|++|+.+.+... ++ .++. ++.... +|+.+.+..+ ++.....+|.+|.+|+.+.+..+ +...-..+|.
T Consensus 281 -~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~ 354 (394)
T 4gt6_A 281 -TGAFMNCPALQDIEFSSR-IT-ELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS 354 (394)
T ss_dssp -TTTTTTCTTCCEEECCTT-CC-EECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred -CcccccccccccccCCCc-cc-ccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence 124667778888887643 33 2333 333333 7888888654 44344567888899999998654 5544467888
Q ss_pred CCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcce
Q 042446 401 KLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 401 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
+|++|+.+++.++.... .++..+..|+.+++..+.+.
T Consensus 355 ~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred CCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 99999999998876541 35667788999888776553
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.5e-12 Score=107.49 Aligned_cols=104 Identities=26% Similarity=0.309 Sum_probs=52.0
Q ss_pred cEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccC
Q 042446 333 RVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGG 412 (445)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 412 (445)
++++++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+|++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44555555444 3333221 2455555555555544444455555555555555555533334445555555555555
Q ss_pred CcccccccccccCCCCCCeEEccCCcce
Q 042446 413 NHFSGKIPSTLGNLSSLSEIVLSNNNLS 440 (445)
Q Consensus 413 n~i~~~~~~~l~~l~~L~~l~l~~n~~~ 440 (445)
|++++..+..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555333344555555555555555544
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1.3e-14 Score=123.38 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=113.8
Q ss_pred ccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccc
Q 042446 296 FGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGI 375 (445)
Q Consensus 296 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 375 (445)
+...+.++.++++.+.+.........++..+..+++|++|++++|.+++ +| .+..++ +|++|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchh
Confidence 3445566666666666655322222345578899999999999999985 66 677776 9999999999998 678777
Q ss_pred cCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccccccc-ccccCCCCCCeEEccCCcceecCC
Q 042446 376 GNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFSGKIP-STLGNLSSLSEIVLSNNNLSGVIP 444 (445)
Q Consensus 376 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~l~l~~n~~~~~~p 444 (445)
..+++|+.|++++|.+.+ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++.+.+|
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 888999999999999984 55 68889999999999999985432 578899999999999999977543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=8.1e-12 Score=103.12 Aligned_cols=103 Identities=30% Similarity=0.266 Sum_probs=66.4
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 63 ALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 63 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 13 ~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4566666665 345444 2667777777777775556666777777777777777765555556667777777777777
Q ss_pred CcccCCccccCCCCCCEEecccccCC
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLT 168 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (445)
+.+..+..|..+++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66444445666666666666666655
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=7.6e-14 Score=130.29 Aligned_cols=187 Identities=15% Similarity=0.118 Sum_probs=123.9
Q ss_pred CCCccEEEccCCcCcccCccc----Cc-CCCCCCEEECccCcCcccCcccc-cCCCCCCEEEccCCcCCCCCCCCCcccc
Q 042446 251 FPNLKFFQIDQNFFTGSIPVS----LS-NASKLEVIQIANNSFSGKFSVNF-GGMKNLSHLILQSSNLGSGESDEMGFIN 324 (445)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~----l~-~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 324 (445)
.+.|++|++++|.++...... +. ..++|++|++++|.+++.....+ ..+++|++|++++|.+++.... .+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~--~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK--DLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH--HHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH--HHHH
Confidence 567999999999887533322 22 33689999999998875444333 3456889999999988653211 1222
Q ss_pred cc-cCCCCCcEEEccCCcceecCC----hhhhhccccCcEEEcccCccccc----CCccccCccCCCeeeCccCcceec-
Q 042446 325 SL-ANCSKLRVLSFGRNQFRGVLP----HSITNLSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGT- 394 (445)
Q Consensus 325 ~l-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~- 394 (445)
.+ ..+++|++|++++|.+++... ..+...+ +|++|++++|.+++. ++..+..+++|+.|++++|.++..
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 23 346889999999998865322 2334444 799999999988753 244566778899999999988743
Q ss_pred ---CChhhhCCCCCCeEEccCCcccccccccccCCC--C---CCeEE--ccCCcce
Q 042446 395 ---IPQEMGKLLNLQGLDFGGNHFSGKIPSTLGNLS--S---LSEIV--LSNNNLS 440 (445)
Q Consensus 395 ---~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~--~---L~~l~--l~~n~~~ 440 (445)
+...+..+++|+.|+|++|+|++.....+..+. . |+.+. +.++.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 345556678899999999998866555543331 1 66666 5555543
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=4.9e-10 Score=105.83 Aligned_cols=302 Identities=11% Similarity=0.120 Sum_probs=176.8
Q ss_pred ccccCCccccCCC-CCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc---CcccCCccccCCCCCCEEecccccCCCC
Q 042446 95 IQGEIPPEFGRLF-RLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK---LVGSIPFEFVFLYKLKGLSLHKNNLTGG 170 (445)
Q Consensus 95 ~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (445)
++.....+|.++. .|+++.+..+ ++.....+|.+|.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ +...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4444556677774 5888888764 665667788888888888887653 44344456677777777666543 2223
Q ss_pred CCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCcCCCCCCcccccC
Q 042446 171 ISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQIHGSLPSCLGLN 250 (445)
Q Consensus 171 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 250 (445)
....+..+.+|+.+.+..+ +.......|.....|+.+.+..+ +.......+ ....|+.+.+..+.
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~~~------------ 193 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPAKV------------ 193 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECTTC------------
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccc-cccceeEEEECCcc------------
Confidence 3344566666666666543 22233445555666666665433 221112222 22345555443321
Q ss_pred CCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcc-------------cCcccccCCCCCCEEEccCCcCCCCCC
Q 042446 251 FPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSG-------------KFSVNFGGMKNLSHLILQSSNLGSGES 317 (445)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------------~~~~~l~~~~~L~~L~l~~~~~~~~~~ 317 (445)
.......+..+..++........... .....+.....+..+.+... +..+.
T Consensus 194 --------------~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~- 257 (394)
T 4gt6_A 194 --------------TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIE- 257 (394)
T ss_dssp --------------CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEEC-
T ss_pred --------------cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcc-
Confidence 11122233344444444333322111 01111223334445544321 11111
Q ss_pred CCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCCh
Q 042446 318 DEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQ 397 (445)
Q Consensus 318 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 397 (445)
..++..|..|+.+.+..+... ....++.... +|+.+.+.. .++......|.+|.+|+.+.+.++ ++..-..
T Consensus 258 -----~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 258 -----THAFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp -----TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred -----cceeeecccccEEecccccce-ecCccccccc-ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 125788999999999876432 3333444444 899999964 444345567889999999999765 5545568
Q ss_pred hhhCCCCCCeEEccCCcccccccccccCCCCCCeEEccCCcc
Q 042446 398 EMGKLLNLQGLDFGGNHFSGKIPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 398 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~l~l~~n~~ 439 (445)
+|.+|++|+.+.|..+ ++.....+|.+|++|+.+++.++..
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 8999999999999765 6645567999999999999988753
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=1.4e-11 Score=102.03 Aligned_cols=103 Identities=23% Similarity=0.231 Sum_probs=68.4
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 63 ALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 63 ~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
.++++++.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4666676664 4555443 667777777777776666667777777777777777775444455677777777777777
Q ss_pred CcccCCccccCCCCCCEEecccccCC
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLT 168 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (445)
+.+..+..|..+++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 76444444666777777777776655
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1e-13 Score=129.38 Aligned_cols=187 Identities=15% Similarity=0.091 Sum_probs=118.2
Q ss_pred CCCcEEEccCCcCCCCCCcc----cccCCCCccEEEccCCcCcccCcccC-cCCCCCCEEECccCcCcccCcccc-----
Q 042446 227 SFLVNFSVSQNQIHGSLPSC----LGLNFPNLKFFQIDQNFFTGSIPVSL-SNASKLEVIQIANNSFSGKFSVNF----- 296 (445)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l----- 296 (445)
+.|+.|++++|.+....... +....++|++|++++|.+++.....+ ..+++|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 57888888888876322222 22224688899998888865433333 234678888999888876544444
Q ss_pred cCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecC----ChhhhhccccCcEEEcccCccccc--
Q 042446 297 GGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVL----PHSITNLSSQLQVLFLGFNQLYGS-- 370 (445)
Q Consensus 297 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-- 370 (445)
...++|++|++++|.++..... .+...+..+++|++|++++|.+.+.. ...+.... +|++|++++|.+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAA 228 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCHHHH
T ss_pred hcCCccceeeCCCCCCChHHHH--HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCHHHH
Confidence 3567888999988887552211 24445567888899999888876533 23333444 788999998888753
Q ss_pred --CCccccCccCCCeeeCccCcceecCChhhhCCC-----CCCeEE--ccCCccc
Q 042446 371 --IPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLL-----NLQGLD--FGGNHFS 416 (445)
Q Consensus 371 --~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-----~L~~L~--l~~n~i~ 416 (445)
++..+..+++|+.|+|++|.+...-...+.... .|+.+. +..+.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 233445668889999988888754444443321 155665 5566554
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=2.1e-11 Score=100.96 Aligned_cols=80 Identities=24% Similarity=0.267 Sum_probs=32.7
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCCEEecccc
Q 042446 86 REINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKN 165 (445)
Q Consensus 86 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (445)
+.++++++.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444444443 3333222 34444444444444333444444444444444444444222222333344444444444
Q ss_pred cCC
Q 042446 166 NLT 168 (445)
Q Consensus 166 ~~~ 168 (445)
.+.
T Consensus 92 ~l~ 94 (174)
T 2r9u_A 92 HLK 94 (174)
T ss_dssp CCC
T ss_pred ccc
Confidence 333
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=1.9e-08 Score=94.48 Aligned_cols=315 Identities=12% Similarity=0.070 Sum_probs=157.4
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 042446 79 IGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLYKLK 158 (445)
Q Consensus 79 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (445)
.....+|+.+.+.. .++.....+|.+|.+|+.+.+..+ ++.....+|.++ +|+.+.+..+ +......+|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 34456788888864 355456677888888888888653 554555667776 6777766543 33233334544 3677
Q ss_pred EEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCcccCCccCcCCCCCcEEEccCCc
Q 042446 159 GLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGKIPPSICNLSFLVNFSVSQNQ 238 (445)
Q Consensus 159 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 238 (445)
.+.+..+... .....+.++ +++.+.+..+ +.......+.....++.+.+.......... .......
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~-~~~~~~~---------- 182 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAE-NYVLYNK---------- 182 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEE-TTEEEET----------
T ss_pred cccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecc-cceeccc----------
Confidence 7777654211 222233333 4555554432 222334455566666666655432210000 0000000
Q ss_pred CCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCC
Q 042446 239 IHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESD 318 (445)
Q Consensus 239 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 318 (445)
.......+. ....+..+.+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +..+..
T Consensus 183 -~~~~~~~~~-~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~- 256 (379)
T 4h09_A 183 -NKTILESYP-AAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS- 256 (379)
T ss_dssp -TSSEEEECC-TTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT-
T ss_pred -ccceecccc-ccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc-
Confidence 000001111 12333343333221 1122334455566666666543 23344455566666666666543 222111
Q ss_pred CCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCccCCCeeeCccCcceecCChh
Q 042446 319 EMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQE 398 (445)
Q Consensus 319 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 398 (445)
.++..|.+|+.+.+..+ +.......+.... +|+.+.+.++.++......|.+|.+|+.+.|.++ +...-..+
T Consensus 257 -----~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 328 (379)
T 4h09_A 257 -----FLLQNCTALKTLNFYAK-VKTVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA 328 (379)
T ss_dssp -----TTTTTCTTCCEEEECCC-CSEECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred -----cccceeehhcccccccc-ceecccccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH
Confidence 14555666666666543 2212222233333 6777777666655444556667777777777543 44344566
Q ss_pred hhCCCCCCeEEccCCcccccccccccCCC
Q 042446 399 MGKLLNLQGLDFGGNHFSGKIPSTLGNLS 427 (445)
Q Consensus 399 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 427 (445)
|.+|++|+.+.+..+ ++.....+|.++.
T Consensus 329 F~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 329 FKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred hhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 777777777777554 4433345565553
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=6.3e-08 Score=90.85 Aligned_cols=313 Identities=12% Similarity=0.022 Sum_probs=167.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEc
Q 042446 59 RRVIALDLMSKALSGSLSPHIGNLSFLREINLMDNTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSL 138 (445)
Q Consensus 59 ~~v~~l~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l 138 (445)
.+++.+.+.. +++..-..++.++.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +......+|.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 4566676653 355445567889999999999764 655666778887 6888887654 55344555665 48999999
Q ss_pred cCCcCcccCCccccCCCCCCEEecccccCCCCCCccCCCCCCcceEeecccccccccCcccCCCCCCCEEEccCCCCccc
Q 042446 139 GQNKLVGSIPFEFVFLYKLKGLSLHKNNLTGGISPFLGNLTFLELVSLSYNSFEGNIPDSLGQLKELKSLAIGVNNLSGK 218 (445)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 218 (445)
..+... .....|..+ +|+.+.+..+ +.......+..+..++.+.+............+. ..... .
T Consensus 121 p~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~-----------~ 185 (379)
T 4h09_A 121 PGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNK-----------T 185 (379)
T ss_dssp CTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTS-----------S
T ss_pred CCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccccc-----------c
Confidence 875332 344455554 5777666543 2323445567788888887765432211000000 00000 0
Q ss_pred CCccCcCCCCCcEEEccCCcCCCCCCcccccCCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCcccccC
Q 042446 219 IPPSICNLSFLVNFSVSQNQIHGSLPSCLGLNFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFGG 298 (445)
Q Consensus 219 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 298 (445)
....+.....+..+.+..... .+.......+..|+.+.+..+ +.......+..+..|+.+.+..+ ++......|..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~ 261 (379)
T 4h09_A 186 ILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN 261 (379)
T ss_dssp EEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTT
T ss_pred eecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccce
Confidence 111112222333333222110 111111112444555554332 22223344555666666666554 33444555666
Q ss_pred CCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhccccCcEEEcccCcccccCCccccCc
Q 042446 299 MKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNL 378 (445)
Q Consensus 299 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 378 (445)
+.+|+.+.+..+ +..+. ..++.+|++|+.+.+.++.++.....++.... +|+.+.+..+ ++.....+|.+|
T Consensus 262 ~~~l~~i~l~~~-i~~i~------~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVP------YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV-KLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp CTTCCEEEECCC-CSEEC------TTTTTTCTTCCEEEECCTTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTC
T ss_pred eehhcccccccc-ceecc------ccccccccccccccccccccceehhhhhcCCC-CCCEEEcCcc-ccEEHHHHhhCC
Confidence 666666666432 22211 12456667777777766655532333344444 6777777543 333345567788
Q ss_pred cCCCeeeCccCcceecCChhhhCCCCC
Q 042446 379 VNLYLLAMEQNQFIGTIPQEMGKLLNL 405 (445)
Q Consensus 379 ~~L~~L~l~~n~~~~~~~~~~~~~~~L 405 (445)
.+|+.+.+..+ +...-..+|.+++.+
T Consensus 333 ~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 333 KALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred CCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 88888888654 443445677666443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=5.1e-10 Score=103.84 Aligned_cols=103 Identities=19% Similarity=0.160 Sum_probs=60.4
Q ss_pred EEEccCC-cCCCCCCCCCcccccccCCCCCcEEEccC-CcceecCChhhhhccccCcEEEcccCcccccCCccccCccCC
Q 042446 304 HLILQSS-NLGSGESDEMGFINSLANCSKLRVLSFGR-NQFRGVLPHSITNLSSQLQVLFLGFNQLYGSIPSGIGNLVNL 381 (445)
Q Consensus 304 ~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 381 (445)
.++.+++ .+.. +|. +..+++|++|+|++ |.+.+..+..+..+. +|++|+|++|.+++..|..|..+++|
T Consensus 12 ~v~~~~~n~l~~-------ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 12 GLRCTRDGALDS-------LHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRL 82 (347)
T ss_dssp CEECCSSCCCTT-------TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred EEEcCCCCCCCc-------cCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCC
Confidence 3455555 4443 334 55666666777764 666644445555554 66666666666666555566666666
Q ss_pred CeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 382 YLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 382 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
+.|+|++|++.+..+..+..++ |+.|+|.+|++.
T Consensus 83 ~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 83 SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666666666633333443333 666666666655
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=8.3e-10 Score=102.41 Aligned_cols=102 Identities=24% Similarity=0.181 Sum_probs=83.6
Q ss_pred EcCCC-CCcccccccccCCCCCCEEECCC-CcccccCCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccCCc
Q 042446 65 DLMSK-ALSGSLSPHIGNLSFLREINLMD-NTIQGEIPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQNK 142 (445)
Q Consensus 65 ~l~~~-~~~~~~~~~l~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~~~ 142 (445)
+.+++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|+|++|.
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44455 565 4677 88899999999996 99987777889999999999999999998888888999999999999999
Q ss_pred CcccCCccccCCCCCCEEecccccCCC
Q 042446 143 LVGSIPFEFVFLYKLKGLSLHKNNLTG 169 (445)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (445)
+.+..+..+..++ |+.|++.+|.+..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9855555555555 9999999888763
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=3.1e-10 Score=104.93 Aligned_cols=159 Identities=17% Similarity=0.225 Sum_probs=87.5
Q ss_pred CCCCccEEEccCCcCcccCcccCcCCCCCCEEECccCcCcccCccccc--CCCCCCEEEccCC--cCCCCCCCCCccccc
Q 042446 250 NFPNLKFFQIDQNFFTGSIPVSLSNASKLEVIQIANNSFSGKFSVNFG--GMKNLSHLILQSS--NLGSGESDEMGFINS 325 (445)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~~~~~~~~~~~ 325 (445)
.+|+|++|.++++.-. .++. +. +++|++|++..+.++......+. .+|+|+.|+++.+ ...... ....+...
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-DMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-CGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-hHHHHHHH
Confidence 3677888888776311 1222 32 67888888887777654444443 6788888887532 211110 00011112
Q ss_pred c--cCCCCCcEEEccCCcceecCChhhhh--ccccCcEEEcccCccccc----CCccccCccCCCeeeCccCcceecCCh
Q 042446 326 L--ANCSKLRVLSFGRNQFRGVLPHSITN--LSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGTIPQ 397 (445)
Q Consensus 326 l--~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~ 397 (445)
+ ..+|+|++|.+.+|.+.+..+..+.. ..++|++|+++.|.+++. ++..+..+++|+.|++++|.++.....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 2 34778888888777776444333332 123677777777776643 233334566777777777766543333
Q ss_pred hhhC-CCCCCeEEccCCc
Q 042446 398 EMGK-LLNLQGLDFGGNH 414 (445)
Q Consensus 398 ~~~~-~~~L~~L~l~~n~ 414 (445)
.+.. + ...++++.++
T Consensus 326 ~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC--CSEEECCSBC
T ss_pred HHHHHc--CCEEEecCCc
Confidence 3332 1 2446666554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=2.9e-10 Score=105.15 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=95.5
Q ss_pred CcccCcCCCCCCEEECccCcCcccCcccccCCCCCCEEEccCCcCCCCCCCCCcccccc--cCCCCCcEEEccCC--cce
Q 042446 268 IPVSLSNASKLEVIQIANNSFSGKFSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSL--ANCSKLRVLSFGRN--QFR 343 (445)
Q Consensus 268 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~--~~~ 343 (445)
+...+..+|+|+.|.+.++.-... + .+ .+++|+.|.+..+.+.. .....+ ..+|+|++|+|+.+ ...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l-~-~~-~~~~L~~L~L~~~~l~~------~~l~~l~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSI-G-KK-PRPNLKSLEIISGGLPD------SVVEDILGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBC-C-SC-BCTTCSEEEEECSBCCH------HHHHHHHHSBCTTCCEEEEECBCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCcee-c-cc-cCCCCcEEEEecCCCCh------HHHHHHHHccCCCCcEEEEeccccccc
Confidence 334556778899999887731111 1 13 37888888888777644 222223 36788888888532 111
Q ss_pred ec-----CChhhh-hccccCcEEEcccCcccccCCccc---cCccCCCeeeCccCcceec----CChhhhCCCCCCeEEc
Q 042446 344 GV-----LPHSIT-NLSSQLQVLFLGFNQLYGSIPSGI---GNLVNLYLLAMEQNQFIGT----IPQEMGKLLNLQGLDF 410 (445)
Q Consensus 344 ~~-----~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l 410 (445)
+. +...+. ...++|++|++++|.+++..+..+ ..+++|+.|+|+.|.+.+. ++..+..+++|+.|+|
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 11 111111 112488888888888764332222 2477888888888877643 3334456788888888
Q ss_pred cCCcccccccccccC-CCCCCeEEccCCc
Q 042446 411 GGNHFSGKIPSTLGN-LSSLSEIVLSNNN 438 (445)
Q Consensus 411 ~~n~i~~~~~~~l~~-l~~L~~l~l~~n~ 438 (445)
++|.+++.....+.. + ..++++++++
T Consensus 315 ~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 315 KYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 888887655444443 2 3556666654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=4.5e-09 Score=87.74 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=66.1
Q ss_pred cccccCCCCCCEEEccCC-cCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhh----hhccccCcEEEcccCcc
Q 042446 293 SVNFGGMKNLSHLILQSS-NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSI----TNLSSQLQVLFLGFNQL 367 (445)
Q Consensus 293 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~ 367 (445)
...+...+.|++|++++| .+...... .+...+..+++|++|+|++|.+.+.....+ .... +|++|++++|.+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~--~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i 105 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLK--ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFI 105 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHH--HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHH--HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcC
Confidence 344566777777777777 66542211 234455566777777777776654322222 2222 566666666666
Q ss_pred ccc----CCccccCccCCCeeeC--ccCcceec----CChhhhCCCCCCeEEccCCccc
Q 042446 368 YGS----IPSGIGNLVNLYLLAM--EQNQFIGT----IPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 368 ~~~----~~~~~~~~~~L~~L~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
++. +...+...++|+.|++ ++|.+... +...+...++|++|+|++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 532 2334444556666666 55655432 2334444556666666666554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=6.5e-09 Score=86.76 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=55.5
Q ss_pred cccCCCCCcEEEccCC-cceecCChhh----hhccccCcEEEcccCccccc----CCccccCccCCCeeeCccCcceec-
Q 042446 325 SLANCSKLRVLSFGRN-QFRGVLPHSI----TNLSSQLQVLFLGFNQLYGS----IPSGIGNLVNLYLLAMEQNQFIGT- 394 (445)
Q Consensus 325 ~l~~~~~L~~L~l~~~-~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~- 394 (445)
.+..++.|++|++++| .+.+.....+ ... ++|++|++++|.+.+. +...+...++|+.|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3445555666666655 5543222222 222 2566666666655432 122233345566666666655422
Q ss_pred ---CChhhhCCCCCCeEEc--cCCccccc----ccccccCCCCCCeEEccCCcc
Q 042446 395 ---IPQEMGKLLNLQGLDF--GGNHFSGK----IPSTLGNLSSLSEIVLSNNNL 439 (445)
Q Consensus 395 ---~~~~~~~~~~L~~L~l--~~n~i~~~----~~~~l~~l~~L~~l~l~~n~~ 439 (445)
+...+...++|+.|+| ++|.+++. +.+.+...++|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2344445555666666 55555533 223344445566666665554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.56 E-value=1.8e-08 Score=81.86 Aligned_cols=83 Identities=7% Similarity=-0.002 Sum_probs=37.4
Q ss_pred CCcEEEccCCcceecCChhhhhccccCcEEEcccCc-ccccCCccccC----ccCCCeeeCccCc-ceecCChhhhCCCC
Q 042446 331 KLRVLSFGRNQFRGVLPHSITNLSSQLQVLFLGFNQ-LYGSIPSGIGN----LVNLYLLAMEQNQ-FIGTIPQEMGKLLN 404 (445)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~n~-~~~~~~~~~~~~~~ 404 (445)
+|++|+++++.+++.....+..++ +|++|++++|. +++..-..+.. +++|++|++++|. ++..-...+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 455555555555443333333333 55555555553 44332222332 1345555555553 33222233444555
Q ss_pred CCeEEccCCc
Q 042446 405 LQGLDFGGNH 414 (445)
Q Consensus 405 L~~L~l~~n~ 414 (445)
|+.|+|++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=4.1e-07 Score=73.87 Aligned_cols=85 Identities=7% Similarity=-0.010 Sum_probs=48.0
Q ss_pred CCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCc-ceecCChhhhhc---cccCcEEEcccCc-ccccCCcc
Q 042446 300 KNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQ-FRGVLPHSITNL---SSQLQVLFLGFNQ-LYGSIPSG 374 (445)
Q Consensus 300 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~~~~~~ 374 (445)
.+|+.|+++++.+++. -...+..|++|++|+|++|. +++.....+... .++|++|++++|. +++..-..
T Consensus 61 ~~L~~LDLs~~~Itd~------GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI------GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGG------GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHH------HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 3566677766665442 12234566667777776663 554433334332 1256677776664 66544444
Q ss_pred ccCccCCCeeeCccCc
Q 042446 375 IGNLVNLYLLAMEQNQ 390 (445)
Q Consensus 375 ~~~~~~L~~L~l~~n~ 390 (445)
+..+++|+.|++++|.
T Consensus 135 L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGGCTTCCEEEEESCT
T ss_pred HhcCCCCCEEECCCCC
Confidence 5566667777776665
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=3.4e-07 Score=80.25 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=52.7
Q ss_pred cCcEEEcccCcccc--cCCccccCccCCCeeeCccCcceecCChhhhCCC--CCCeEEccCCccccccc-------cccc
Q 042446 356 QLQVLFLGFNQLYG--SIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLL--NLQGLDFGGNHFSGKIP-------STLG 424 (445)
Q Consensus 356 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~-------~~l~ 424 (445)
+|++|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.+| ..+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 78888888888775 3445566788888888888887743 2233333 88888888888876544 2356
Q ss_pred CCCCCCeEE
Q 042446 425 NLSSLSEIV 433 (445)
Q Consensus 425 ~l~~L~~l~ 433 (445)
.+|+|+.|+
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 778888754
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=5.4e-06 Score=72.57 Aligned_cols=139 Identities=19% Similarity=0.147 Sum_probs=88.4
Q ss_pred CCcceeeeEeCCCCCcEEEEEcCCC---CCccccc---------------------cc---ccCCCCCCE--EECCCCcc
Q 042446 45 HFCEWDGVTCGRRHRRVIALDLMSK---ALSGSLS---------------------PH---IGNLSFLRE--INLMDNTI 95 (445)
Q Consensus 45 ~~c~~~~~~~~~~~~~v~~l~l~~~---~~~~~~~---------------------~~---l~~l~~L~~--L~L~~~~~ 95 (445)
..|.|.|+.|...+.+|..+...+. .+.+.+. -. +...+.|+. +++..|..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 4678899999877667765555431 1111111 01 222333443 56666633
Q ss_pred c---ccCCccccCCCCCCEEECCCCcCCC--CCCccCcCCCCCCEEEccCCcCcccCCccccCCC--CCCEEecccccCC
Q 042446 96 Q---GEIPPEFGRLFRLEALFLANNSLVG--KIPANLSYCSRLTVLSLGQNKLVGSIPFEFVFLY--KLKGLSLHKNNLT 168 (445)
Q Consensus 96 ~---~~~~~~~~~~~~L~~L~l~~~~i~~--~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~ 168 (445)
. ..+.....++++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+. ..+..+. +|++|++.+|.+.
T Consensus 156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 2 1111122468899999999999986 3456667889999999999998743 2233333 8999999999987
Q ss_pred CCCCc-------cCCCCCCcceEe
Q 042446 169 GGISP-------FLGNLTFLELVS 185 (445)
Q Consensus 169 ~~~~~-------~l~~~~~L~~L~ 185 (445)
+.++. .+..+++|+.|+
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCcchhHHHHHHHHCcccCeEC
Confidence 65542 356788888886
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=1e-05 Score=66.91 Aligned_cols=120 Identities=10% Similarity=0.076 Sum_probs=67.8
Q ss_pred cccCCCCCCEEEccCC-cCCCCCCCCCcccccccCCCCCcEEEccCCcceecCChhhhhc---cccCcEEEcccCccccc
Q 042446 295 NFGGMKNLSHLILQSS-NLGSGESDEMGFINSLANCSKLRVLSFGRNQFRGVLPHSITNL---SSQLQVLFLGFNQLYGS 370 (445)
Q Consensus 295 ~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~ 370 (445)
.+..-+.|++|+++++ .+.+... ..+..++...+.|++|+|++|.+.+.....+... .+.|++|+|++|.|.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga--~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERI--RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHH--HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHH--HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 3455677888888774 5543221 1344556667777777777777765433333221 13677777777777642
Q ss_pred ----CCccccCccCCCeeeCccC---ccee----cCChhhhCCCCCCeEEccCCccc
Q 042446 371 ----IPSGIGNLVNLYLLAMEQN---QFIG----TIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 371 ----~~~~~~~~~~L~~L~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
+...+....+|+.|+|++| .+.. .+.+.+...++|+.|+++.|.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2223444556777777654 2221 23445556666777777666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=7.6e-06 Score=67.74 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=33.6
Q ss_pred cCCCCCCEEECccC-cCccc----CcccccCCCCCCEEEccCCcCCCCCCCCCcccccccCCCCCcEEEccCCccee
Q 042446 273 SNASKLEVIQIANN-SFSGK----FSVNFGGMKNLSHLILQSSNLGSGESDEMGFINSLANCSKLRVLSFGRNQFRG 344 (445)
Q Consensus 273 ~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 344 (445)
.+.+.|++|+|+++ .+.+. +...+..-+.|+.|+|++|.+.+.... .+...+...+.|++|+|+.|.+.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~--alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR--GLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT--THHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH--HHHHHHhcCCccCeEecCCCcCCH
Confidence 34455555555553 44322 222334445555555555555442221 333444455555555555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.0052 Score=47.25 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=40.1
Q ss_pred EEEcccCccc-ccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCCccc
Q 042446 359 VLFLGFNQLY-GSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGNHFS 416 (445)
Q Consensus 359 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 416 (445)
.++.+++.++ ..+|..+. ++|+.|+|++|.+...-+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6777777775 24554332 46888888888888555566778888888888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.69 E-value=0.026 Score=43.24 Aligned_cols=36 Identities=28% Similarity=0.130 Sum_probs=16.4
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEecccccC
Q 042446 132 RLTVLSLGQNKLVGSIPFEFVFLYKLKGLSLHKNNL 167 (445)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (445)
+|++|+|++|.++...+..|..+++|++|++++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344555555544433333344444455555444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.02 E-value=3 Score=29.81 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=32.4
Q ss_pred ccccCCccccCccCCCeeeCccCcceecCChhhhCCCCCCeEEccCC
Q 042446 367 LYGSIPSGIGNLVNLYLLAMEQNQFIGTIPQEMGKLLNLQGLDFGGN 413 (445)
Q Consensus 367 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 413 (445)
++......|.+|.+|+.+.|-.+ ++..-..+|.+|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44344556778888888888765 34355677888888888888764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.37 E-value=21 Score=25.35 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=20.0
Q ss_pred CCccccCCCCCCEEECCCCcCCCCCCccCcCCCCCCEEEccC
Q 042446 99 IPPEFGRLFRLEALFLANNSLVGKIPANLSYCSRLTVLSLGQ 140 (445)
Q Consensus 99 ~~~~~~~~~~L~~L~l~~~~i~~~~p~~l~~l~~L~~L~l~~ 140 (445)
...+|.+|..|+.+.|..+ ++.....+|.+|.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344555555555555442 3333444555555555555543
Done!