Query 042447
Match_columns 355
No_of_seqs 190 out of 1837
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:15:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 1.4E-65 3E-70 508.2 37.9 310 37-349 49-437 (443)
2 PLN03003 Probable polygalactur 100.0 1.1E-63 2.4E-68 491.6 34.6 296 39-337 22-393 (456)
3 PLN03010 polygalacturonase 100.0 2.2E-63 4.7E-68 486.6 33.2 297 38-335 44-405 (409)
4 PLN02155 polygalacturonase 100.0 1.3E-62 2.8E-67 480.0 35.1 291 39-334 26-393 (394)
5 PLN02218 polygalacturonase ADP 100.0 1.4E-62 3.1E-67 484.7 35.4 286 38-329 65-429 (431)
6 PLN02188 polygalacturonase/gly 100.0 1.5E-60 3.3E-65 467.3 35.6 292 36-333 32-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 2E-44 4.4E-49 347.1 21.7 243 71-319 5-321 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 4.3E-34 9.2E-39 285.7 22.4 233 37-279 79-398 (542)
9 PF12708 Pectate_lyase_3: Pect 99.8 8.6E-20 1.9E-24 165.5 16.9 60 40-104 1-61 (225)
10 TIGR03808 RR_plus_rpt_1 twin-a 99.8 4.9E-17 1.1E-21 158.7 22.4 132 36-185 33-167 (455)
11 PF03718 Glyco_hydro_49: Glyco 99.3 1.2E-10 2.6E-15 115.4 20.1 213 72-309 232-517 (582)
12 TIGR03805 beta_helix_1 paralle 99.2 2.9E-09 6.2E-14 102.4 21.7 170 60-257 1-180 (314)
13 PRK10123 wcaM putative colanic 99.2 3.6E-10 7.8E-15 104.1 12.3 266 27-311 22-317 (464)
14 PLN02218 polygalacturonase ADP 99.1 1.3E-09 2.9E-14 108.5 16.0 134 162-310 205-348 (431)
15 PF00295 Glyco_hydro_28: Glyco 99.1 2.9E-09 6.2E-14 103.0 15.8 131 163-308 106-246 (326)
16 PLN02793 Probable polygalactur 99.1 4.7E-09 1E-13 105.0 16.2 134 162-310 190-333 (443)
17 PLN02155 polygalacturonase 99.0 5.4E-09 1.2E-13 103.0 15.9 136 160-310 156-302 (394)
18 PLN02188 polygalacturonase/gly 99.0 6.3E-09 1.4E-13 102.9 16.2 136 160-310 166-313 (404)
19 PLN03003 Probable polygalactur 99.0 6.3E-09 1.4E-13 103.7 15.8 137 159-310 148-294 (456)
20 PLN03010 polygalacturonase 98.9 3.5E-08 7.7E-13 97.6 16.6 139 157-310 165-313 (409)
21 COG5434 PGU1 Endopygalactoruna 98.6 1.1E-06 2.4E-11 89.2 14.7 128 177-308 262-399 (542)
22 TIGR03805 beta_helix_1 paralle 98.4 9.5E-06 2.1E-10 78.1 16.2 114 130-258 32-159 (314)
23 COG3866 PelB Pectate lyase [Ca 98.4 2.5E-05 5.3E-10 73.0 17.1 121 124-251 95-230 (345)
24 smart00656 Amb_all Amb_all dom 98.3 2.7E-05 5.9E-10 69.5 14.9 114 158-275 40-167 (190)
25 PF07602 DUF1565: Protein of u 98.0 0.00017 3.7E-09 66.7 13.3 92 158-257 97-195 (246)
26 PF00544 Pec_lyase_C: Pectate 97.9 3.1E-05 6.8E-10 69.7 7.7 113 158-274 46-180 (200)
27 PF13229 Beta_helix: Right han 97.7 0.00022 4.7E-09 60.2 9.6 128 158-308 9-138 (158)
28 PF13229 Beta_helix: Right han 97.7 0.00028 6.2E-09 59.5 9.8 113 177-310 1-115 (158)
29 PF14592 Chondroitinas_B: Chon 97.5 0.0019 4.1E-08 63.9 14.0 205 56-278 3-239 (425)
30 PLN02773 pectinesterase 97.5 0.022 4.8E-07 54.8 20.5 135 158-306 102-239 (317)
31 PF12541 DUF3737: Protein of u 97.4 0.0012 2.6E-08 60.9 10.1 17 182-198 153-169 (277)
32 PLN02480 Probable pectinestera 97.4 0.043 9.4E-07 53.4 21.3 132 158-305 132-275 (343)
33 PF05048 NosD: Periplasmic cop 97.3 0.0062 1.4E-07 55.9 14.2 126 124-272 16-142 (236)
34 PF05048 NosD: Periplasmic cop 97.3 0.014 3E-07 53.6 16.0 129 124-274 38-168 (236)
35 PF12541 DUF3737: Protein of u 97.2 0.023 4.9E-07 52.6 15.8 120 183-334 116-254 (277)
36 PF12218 End_N_terminal: N ter 97.2 0.0005 1.1E-08 49.0 3.6 39 48-89 1-39 (67)
37 PLN02682 pectinesterase family 97.0 0.12 2.7E-06 50.6 20.2 132 158-306 163-304 (369)
38 PF03718 Glyco_hydro_49: Glyco 97.0 0.073 1.6E-06 54.0 18.9 226 72-306 256-553 (582)
39 PLN02176 putative pectinestera 97.0 0.17 3.6E-06 49.2 20.8 147 57-248 51-207 (340)
40 PLN02432 putative pectinestera 96.9 0.18 4E-06 48.0 19.8 132 158-306 94-229 (293)
41 PLN02665 pectinesterase family 96.9 0.24 5.3E-06 48.6 20.9 134 158-306 154-297 (366)
42 PLN02671 pectinesterase 96.9 0.29 6.3E-06 47.9 21.2 132 158-306 154-294 (359)
43 PLN02933 Probable pectinestera 96.9 0.24 5.2E-06 50.9 21.3 204 57-306 230-453 (530)
44 PF12708 Pectate_lyase_3: Pect 96.8 0.038 8.3E-07 49.5 13.9 45 160-204 94-141 (225)
45 PLN02634 probable pectinestera 96.8 0.28 6E-06 48.0 20.4 132 158-305 149-289 (359)
46 PLN02708 Probable pectinestera 96.8 0.36 7.8E-06 50.1 22.3 135 158-306 330-486 (553)
47 PLN02916 pectinesterase family 96.7 0.39 8.4E-06 49.0 21.3 135 158-306 277-425 (502)
48 PLN02995 Probable pectinestera 96.6 0.31 6.6E-06 50.4 20.1 205 56-306 234-460 (539)
49 TIGR03808 RR_plus_rpt_1 twin-a 96.6 0.15 3.2E-06 51.1 17.0 96 173-277 236-336 (455)
50 PLN02713 Probable pectinestera 96.6 0.45 9.7E-06 49.5 21.3 135 158-306 340-488 (566)
51 PLN02201 probable pectinestera 96.6 0.61 1.3E-05 47.9 21.8 205 56-306 217-441 (520)
52 PLN02170 probable pectinestera 96.6 0.63 1.4E-05 47.8 21.8 202 57-306 237-451 (529)
53 PF01696 Adeno_E1B_55K: Adenov 96.6 0.79 1.7E-05 45.1 21.5 234 41-337 44-307 (386)
54 PLN02990 Probable pectinestera 96.5 0.46 1E-05 49.5 20.9 205 57-306 271-495 (572)
55 PLN02304 probable pectinestera 96.5 0.81 1.7E-05 45.1 21.4 149 57-249 87-247 (379)
56 PF01095 Pectinesterase: Pecti 96.5 0.14 3E-06 49.1 15.8 208 57-306 12-235 (298)
57 PLN02301 pectinesterase/pectin 96.5 0.58 1.3E-05 48.4 21.2 204 57-306 248-471 (548)
58 PRK10531 acyl-CoA thioesterase 96.4 0.39 8.5E-06 47.9 18.9 208 49-279 87-336 (422)
59 PLN02497 probable pectinestera 96.3 0.76 1.7E-05 44.5 19.9 202 57-306 44-263 (331)
60 PLN02488 probable pectinestera 96.3 1.1 2.5E-05 45.6 21.9 204 57-306 209-432 (509)
61 PLN02506 putative pectinestera 96.3 0.23 4.9E-06 51.3 16.9 133 158-306 319-458 (537)
62 PLN02468 putative pectinestera 96.2 0.91 2E-05 47.3 21.1 135 158-306 345-489 (565)
63 PLN02745 Putative pectinestera 96.2 1.2 2.6E-05 46.6 21.7 205 56-306 296-520 (596)
64 PLN02217 probable pectinestera 96.1 0.81 1.8E-05 48.4 20.1 204 57-306 262-485 (670)
65 PLN02484 probable pectinestera 96.1 1.2 2.5E-05 46.7 21.0 205 57-306 284-508 (587)
66 smart00656 Amb_all Amb_all dom 95.9 0.047 1E-06 48.7 8.7 80 178-258 33-122 (190)
67 PLN02416 probable pectinestera 95.9 0.18 4E-06 52.0 13.9 79 158-249 317-397 (541)
68 PLN02197 pectinesterase 95.8 0.55 1.2E-05 49.0 16.9 133 158-305 364-512 (588)
69 PLN03043 Probable pectinestera 95.6 0.83 1.8E-05 47.3 17.7 79 158-249 313-393 (538)
70 PLN02314 pectinesterase 95.6 0.6 1.3E-05 48.8 16.6 135 158-306 365-508 (586)
71 COG3866 PelB Pectate lyase [Ca 95.4 0.11 2.4E-06 49.1 9.5 92 176-275 116-230 (345)
72 PLN02313 Pectinesterase/pectin 95.4 0.76 1.6E-05 48.0 16.5 148 57-249 287-442 (587)
73 PF00544 Pec_lyase_C: Pectate 95.3 0.053 1.1E-06 48.8 6.8 71 178-257 38-135 (200)
74 COG4677 PemB Pectin methyleste 93.9 1.5 3.2E-05 42.1 13.0 81 158-248 189-284 (405)
75 PF03211 Pectate_lyase: Pectat 93.2 4 8.7E-05 37.1 14.1 51 158-214 61-112 (215)
76 COG3420 NosD Nitrous oxidase a 92.2 7.6 0.00016 37.6 15.0 48 158-205 129-179 (408)
77 PRK10123 wcaM putative colanic 89.3 5.4 0.00012 37.8 11.0 136 183-320 149-305 (464)
78 PF09251 PhageP22-tail: Salmon 88.7 3.5 7.6E-05 41.0 9.7 91 208-310 311-401 (549)
79 TIGR03804 para_beta_helix para 87.8 0.87 1.9E-05 30.1 3.6 39 178-217 1-39 (44)
80 PF08480 Disaggr_assoc: Disagg 71.0 30 0.00066 30.7 8.3 67 184-251 33-110 (198)
81 PF01696 Adeno_E1B_55K: Adenov 66.8 31 0.00067 34.2 8.4 85 183-279 119-205 (386)
82 PF07602 DUF1565: Protein of u 64.5 49 0.0011 30.8 8.9 71 184-259 96-172 (246)
83 PLN02698 Probable pectinestera 62.8 1.7E+02 0.0037 30.2 13.3 134 158-306 270-418 (497)
84 PLN02480 Probable pectinestera 58.4 31 0.00067 33.8 6.7 109 185-307 132-252 (343)
85 PF14592 Chondroitinas_B: Chon 50.7 34 0.00074 34.4 5.7 85 187-276 225-319 (425)
86 smart00710 PbH1 Parallel beta- 49.7 22 0.00047 19.4 2.6 20 185-204 2-22 (26)
87 PLN02773 pectinesterase 49.2 2.6E+02 0.0055 27.1 11.7 103 185-308 102-213 (317)
88 PRK10531 acyl-CoA thioesterase 47.1 2.9E+02 0.0062 27.9 11.6 118 184-307 205-336 (422)
89 COG0336 TrmD tRNA-(guanine-N1) 45.7 7.6 0.00016 35.6 0.3 30 54-83 61-92 (240)
90 PLN02713 Probable pectinestera 41.5 3.6E+02 0.0078 28.4 11.8 110 185-308 340-456 (566)
91 PF09251 PhageP22-tail: Salmon 39.7 1.8E+02 0.0039 29.4 8.6 21 238-258 264-285 (549)
92 PLN02201 probable pectinestera 38.7 4.7E+02 0.01 27.2 12.3 111 184-308 292-409 (520)
93 PF01095 Pectinesterase: Pecti 38.6 3.6E+02 0.0078 25.7 11.0 110 184-309 86-204 (298)
94 PLN03043 Probable pectinestera 36.4 4.7E+02 0.01 27.3 11.7 56 185-250 313-374 (538)
95 PLN02933 Probable pectinestera 34.2 5.4E+02 0.012 26.8 11.6 110 185-308 305-421 (530)
96 PLN02698 Probable pectinestera 33.0 5.5E+02 0.012 26.5 11.4 111 184-308 269-386 (497)
97 PLN02301 pectinesterase/pectin 32.3 5.6E+02 0.012 26.8 11.4 111 184-308 322-439 (548)
98 COG3420 NosD Nitrous oxidase a 32.2 3.2E+02 0.007 26.8 8.8 47 178-225 196-244 (408)
99 PLN02217 probable pectinestera 31.3 4.2E+02 0.0091 28.5 10.4 110 185-308 337-453 (670)
100 PLN02313 Pectinesterase/pectin 31.2 5.1E+02 0.011 27.4 11.0 57 184-250 361-423 (587)
101 PLN02468 putative pectinestera 30.5 5.8E+02 0.013 26.8 11.2 110 185-308 345-461 (565)
102 PLN02708 Probable pectinestera 30.4 6.4E+02 0.014 26.4 11.5 110 185-308 330-450 (553)
103 PF10162 G8: G8 domain; Inter 30.0 1.6E+02 0.0034 24.1 5.8 36 71-111 11-46 (125)
104 PLN02745 Putative pectinestera 29.1 7E+02 0.015 26.4 11.6 111 184-308 371-488 (596)
105 PLN02484 probable pectinestera 27.7 6.6E+02 0.014 26.5 11.1 109 184-308 359-476 (587)
106 COG0290 InfC Translation initi 27.6 15 0.00033 32.0 -0.7 37 8-48 33-69 (176)
107 PLN02314 pectinesterase 27.5 6.4E+02 0.014 26.6 11.0 110 185-308 365-481 (586)
108 PLN02995 Probable pectinestera 26.8 7.2E+02 0.016 26.0 11.1 109 185-309 312-429 (539)
109 PLN02990 Probable pectinestera 26.1 7.9E+02 0.017 25.9 11.3 109 184-308 346-463 (572)
110 PLN02416 probable pectinestera 25.9 6.6E+02 0.014 26.2 10.6 56 185-250 317-378 (541)
111 PLN02432 putative pectinestera 25.3 2E+02 0.0044 27.5 6.3 106 185-307 94-205 (293)
112 PLN02916 pectinesterase family 25.1 7.8E+02 0.017 25.5 12.0 108 185-308 282-393 (502)
113 PLN02506 putative pectinestera 23.9 7.4E+02 0.016 25.9 10.5 109 185-307 319-434 (537)
114 PRK13301 putative L-aspartate 22.7 71 0.0015 30.1 2.6 36 40-81 88-123 (267)
115 PLN02197 pectinesterase 22.1 8E+02 0.017 26.0 10.4 56 185-250 364-425 (588)
116 PLN02497 probable pectinestera 20.5 2.8E+02 0.006 27.0 6.3 95 199-307 141-239 (331)
117 PLN02682 pectinesterase family 20.4 2.9E+02 0.0063 27.4 6.4 92 199-307 187-280 (369)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.4e-65 Score=508.23 Aligned_cols=310 Identities=46% Similarity=0.854 Sum_probs=271.4
Q ss_pred CceEEEeeecCCCCCCCcchHHHHHHHHHHhhcC-CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCCCCC
Q 042447 37 GKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACST-PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNW 115 (355)
Q Consensus 37 ~~~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~-gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~~~~ 115 (355)
.+.++||+||||+|||++|||+|||+||++||+. +|++|+||+|.+|+++++.|.+||+++++|+++|+|+++.++.+|
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w 128 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVW 128 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHc
Confidence 4579999999999999999999999999977874 678999999977999999999999999999999999999999999
Q ss_pred CccCcceEEEEEeccCeEEecceEEECcCCccccCCCCC-------CC-------------------------------c
Q 042447 116 DPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKK-------NK-------------------------------S 157 (355)
Q Consensus 116 ~~~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~-------~~-------------------------------~ 157 (355)
+....+.|+++.+.+|++|+|.|+|||+|+.||...+.. .+ +
T Consensus 129 ~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~ 208 (443)
T PLN02793 129 KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNC 208 (443)
T ss_pred cCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEcc
Confidence 866667899999999999999999999999999653210 11 1
Q ss_pred ccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccceE
Q 042447 158 ESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIV 237 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v 237 (355)
+||+|++++|++|...+|+||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|.++|||+|||+|++.+.+.|
T Consensus 209 ~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V 288 (443)
T PLN02793 209 RRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEV 288 (443)
T ss_pred CcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcE
Confidence 78999999999988889999999999999999999999999999999999999999999999999999999987767889
Q ss_pred EEEEEecceecCCceeEEEEEecc---------------------------------------CCeEEeeEEEEeEEEee
Q 042447 238 TKVVLDTAYLRETANGLRIKTWQT---------------------------------------SAVKISQIMYRNISGTT 278 (355)
Q Consensus 238 ~nV~i~n~~~~~~~~gi~Ik~~~~---------------------------------------~~~~i~nItf~NI~g~~ 278 (355)
+||+|+||++.++.+|+|||+|++ +.+.|+||+|+||+++.
T Consensus 289 ~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~ 368 (443)
T PLN02793 289 RDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTS 368 (443)
T ss_pred EEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEE
Confidence 999999999999999999999962 23567777777777776
Q ss_pred cCcccEEEEcCCCCceeCEEEEeEEEEeCCCc-ceeeeeeeEEeeceeccCCCCccCCCCCCccccCCCccc
Q 042447 279 KSSKAMKFACSDTVPCSDIVLSNVNLEKKDGT-VETYCNSAQGIGYGIVHPSADCLTSNDKDAKLAEPTRNE 349 (355)
Q Consensus 279 ~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~g~-~~~~c~n~~g~~~~~~~p~~~c~~~~~~~~~~~~~~~~~ 349 (355)
..+.++.|.|+++.||+||+|+||+|+...|. ..+.|+|++|...+...|+ .|++.+. -.+.+++..+
T Consensus 369 ~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~-~C~~~~~--~~~~~~~~~~ 437 (443)
T PLN02793 369 ATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPP-PCFSDST--SFIKQKVQSG 437 (443)
T ss_pred cccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCC-ccccCCC--cccccccCCc
Confidence 55668999999999999999999999987554 5788999999999976676 5997754 3444444433
No 2
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.1e-63 Score=491.64 Aligned_cols=296 Identities=43% Similarity=0.845 Sum_probs=261.1
Q ss_pred eEEEeeecCCCCCCCcchHHHHHHHHHHhhc-CCCcEEEEcCCeEEEEeeeeeecccccc-EEEEEceEEeecCCCCCCC
Q 042447 39 VLVNVDSFGAAGDGVSDDTQAFLNAWNTACS-TPKSVFLVPAGRHYLVSATRFKGPCADK-LVIQIDGTIVAPAEPDNWD 116 (355)
Q Consensus 39 ~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~-~gg~~V~iP~G~tY~i~~~~l~~p~~~~-~~l~~~g~l~~~~~~~~~~ 116 (355)
.++||++|||+|||++|||+|||+||++||+ .++++|+||+|++|+++++.|++||+.. ++++++|+++++.. ..|.
T Consensus 22 ~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~-~~w~ 100 (456)
T PLN03003 22 NALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-GNWK 100 (456)
T ss_pred eEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-cccc
Confidence 4799999999999999999999999998887 4689999999987999999999998764 88999999998764 4676
Q ss_pred ccCcceEEEEEeccCeEEecceEEECcCCccccCCCCCC-----------------------------CcccEEEEEEEE
Q 042447 117 PKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKN-----------------------------KSESVRVYQVLV 167 (355)
Q Consensus 117 ~~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~~-----------------------------~~~nv~i~~v~I 167 (355)
.. ...||+|.++++++|+|.|+|||+|+.||.....+. .+++|+|++++|
T Consensus 101 ~~-~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I 179 (456)
T PLN03003 101 GD-KDQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRI 179 (456)
T ss_pred CC-CcceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEE
Confidence 43 357999999999999999999999999997421110 128999999999
Q ss_pred eCCCCCCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccceEEEEEEeccee
Q 042447 168 SAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYL 247 (355)
Q Consensus 168 ~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~ 247 (355)
++|...+|+||||+.+|+||+|+||.|.+|||||+||++++||+|+||+|+++|||+|||+|++...+.|+||+|+||++
T Consensus 180 ~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~ 259 (456)
T PLN03003 180 NAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNF 259 (456)
T ss_pred eCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEE
Confidence 99988999999999999999999999999999999999999999999999999999999999876567899999999999
Q ss_pred cCCceeEEEEEec-----------------------------------------cCCeEEeeEEEEeEEEeecCcccEEE
Q 042447 248 RETANGLRIKTWQ-----------------------------------------TSAVKISQIMYRNISGTTKSSKAMKF 286 (355)
Q Consensus 248 ~~~~~gi~Ik~~~-----------------------------------------~~~~~i~nItf~NI~g~~~~~~~i~i 286 (355)
.++.+|+|||+|+ ++.+.|+||+|+||+|+...+.++.|
T Consensus 260 ~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l 339 (456)
T PLN03003 260 RGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDF 339 (456)
T ss_pred ECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEE
Confidence 9999999999996 12367899999999998777788999
Q ss_pred EcCCCCceeCEEEEeEEEEeCC-C---cceeeeeeeEEeeceeccCCCCccCCCC
Q 042447 287 ACSDTVPCSDIVLSNVNLEKKD-G---TVETYCNSAQGIGYGIVHPSADCLTSND 337 (355)
Q Consensus 287 ~~~~~~~~~nI~~~nV~i~~~~-g---~~~~~c~n~~g~~~~~~~p~~~c~~~~~ 337 (355)
.|++..||+||+|+||+|+... | ...++|+|+.|...++.+|+ .||+..+
T Consensus 340 ~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~-~C~~~~~ 393 (456)
T PLN03003 340 RCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGL-ECLELST 393 (456)
T ss_pred EeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCC-CccccCC
Confidence 9999999999999999999873 2 35899999999999876554 5997665
No 3
>PLN03010 polygalacturonase
Probab=100.00 E-value=2.2e-63 Score=486.57 Aligned_cols=297 Identities=41% Similarity=0.797 Sum_probs=264.0
Q ss_pred ceEEEeeecCCCCCCCcchHHHHHHHHHHhhcCCC--cEEEEcCCeEEEEeeeeeecccc-ccEEEEEceEEeecCCCCC
Q 042447 38 KVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPK--SVFLVPAGRHYLVSATRFKGPCA-DKLVIQIDGTIVAPAEPDN 114 (355)
Q Consensus 38 ~~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~gg--~~V~iP~G~tY~i~~~~l~~p~~-~~~~l~~~g~l~~~~~~~~ 114 (355)
+.++||+||||+|||++|||+|||+||++||..+| ++|+||+|++|+++++.|++||+ ++++|+++|+|+++.++.+
T Consensus 44 ~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~~ 123 (409)
T PLN03010 44 GQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIVA 123 (409)
T ss_pred CcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChhh
Confidence 46899999999999999999999999998886543 79999999669999999999986 5799999999999999999
Q ss_pred CCccCcceEEEEEeccCeEEecceEEECcCCccccCC----CCC------------------CCcccEEEEEEEEeCCCC
Q 042447 115 WDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASS----CKK------------------NKSESVRVYQVLVSAPED 172 (355)
Q Consensus 115 ~~~~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~~----~~~------------------~~~~nv~i~~v~I~~~~~ 172 (355)
|+......|+.|.+++|++|+|.|+|||+|+.||... |.+ ..+++|+|++++|++|..
T Consensus 124 w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~ 203 (409)
T PLN03010 124 WSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPET 203 (409)
T ss_pred ccCCCCcceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCC
Confidence 9755456799999999999999999999999999642 211 123899999999999888
Q ss_pred CCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCce
Q 042447 173 SPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETAN 252 (355)
Q Consensus 173 ~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~ 252 (355)
.+|+||||+.+|++|+|+||+|.+|||||++|+++.++.|+++.|.++|||+|||+|+......|+||+|+||++.++.+
T Consensus 204 s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~ 283 (409)
T PLN03010 204 SPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTN 283 (409)
T ss_pred CCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCc
Confidence 89999999999999999999999999999999999999999999999999999999987666789999999999999999
Q ss_pred eEEEEEec---------------------------------------cCCeEEeeEEEEeEEEeecCcccEEEEcCCCCc
Q 042447 253 GLRIKTWQ---------------------------------------TSAVKISQIMYRNISGTTKSSKAMKFACSDTVP 293 (355)
Q Consensus 253 gi~Ik~~~---------------------------------------~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~ 293 (355)
|+|||+|+ ++.+.|+||+|+||+|+.....++.|.|++..|
T Consensus 284 GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~p 363 (409)
T PLN03010 284 GARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITH 363 (409)
T ss_pred ceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCC
Confidence 99999996 234678888888888887777899999999999
Q ss_pred eeCEEEEeEEEEeCCCc-ceeeeeeeEEeeceeccCCCCccCC
Q 042447 294 CSDIVLSNVNLEKKDGT-VETYCNSAQGIGYGIVHPSADCLTS 335 (355)
Q Consensus 294 ~~nI~~~nV~i~~~~g~-~~~~c~n~~g~~~~~~~p~~~c~~~ 335 (355)
|+||+|+||+|+...|. ..+.|.|+.|...++.+|+ .||.+
T Consensus 364 C~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~-~C~~~ 405 (409)
T PLN03010 364 CKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMR-DCFKN 405 (409)
T ss_pred EeceEEEEEEEEecCCCccceEeeCccccccCCCCCC-ccccc
Confidence 99999999999998754 5789999999988875555 59954
No 4
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.3e-62 Score=480.05 Aligned_cols=291 Identities=39% Similarity=0.765 Sum_probs=258.1
Q ss_pred eEEEeeecCCCCCCCcchHHHHHHHHHHhhcC-CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCCCCCCc
Q 042447 39 VLVNVDSFGAAGDGVSDDTQAFLNAWNTACST-PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDP 117 (355)
Q Consensus 39 ~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~-gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~~~~~~ 117 (355)
.++||+||||+|||++|||+|||+||++||++ +|++|+||+|+ |+++++.|++||+++++|+++|+|+++.++..|..
T Consensus 26 ~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~-yl~g~i~l~gpcksnv~l~l~G~l~~~~d~~~~~~ 104 (394)
T PLN02155 26 NVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGT-FLLKVITFGGPCKSKITFQVAGTVVAPEDYRTFGN 104 (394)
T ss_pred cEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCc-EEEEEEEEcccCCCCceEEEeeEEECccccccccc
Confidence 58999999999999999999999999766764 67899999995 99999999999999999999999999888777743
Q ss_pred cCcceEEEEEeccCeEEecceEEECcCCccccCCCCC----C-------------------------------CcccEEE
Q 042447 118 KLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKK----N-------------------------------KSESVRV 162 (355)
Q Consensus 118 ~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~----~-------------------------------~~~nv~i 162 (355)
...|+.+.+.+++.|+| |+|||+|+.||...... . .++||+|
T Consensus 105 --~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i 181 (394)
T PLN02155 105 --SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVV 181 (394)
T ss_pred --cceeEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEE
Confidence 24689999999999999 99999999999753210 0 1189999
Q ss_pred EEEEEeCCCCCCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccceEEEEEE
Q 042447 163 YQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVL 242 (355)
Q Consensus 163 ~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i 242 (355)
++++|++|.+.+|+||||+.+|+||+|+||+|.+|||||++|++++||+|+|++|.++||++|||+|++.+.+.|+||+|
T Consensus 182 ~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v 261 (394)
T PLN02155 182 RNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVENVTV 261 (394)
T ss_pred EEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEEEEE
Confidence 99999999889999999999999999999999999999999999999999999999999999999998866788999999
Q ss_pred ecceecCCceeEEEEEec----------------------------------------cCCeEEeeEEEEeEEEeecCcc
Q 042447 243 DTAYLRETANGLRIKTWQ----------------------------------------TSAVKISQIMYRNISGTTKSSK 282 (355)
Q Consensus 243 ~n~~~~~~~~gi~Ik~~~----------------------------------------~~~~~i~nItf~NI~g~~~~~~ 282 (355)
+||++.++.+|+|||+|. .+.+.|+||+|+||+++.....
T Consensus 262 ~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~ 341 (394)
T PLN02155 262 SSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQE 341 (394)
T ss_pred EeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCc
Confidence 999999999999999984 1125688888888888876667
Q ss_pred cEEEEcCCCCceeCEEEEeEEEEeCCCc-ceeeeeeeEEeeceeccCCCCccC
Q 042447 283 AMKFACSDTVPCSDIVLSNVNLEKKDGT-VETYCNSAQGIGYGIVHPSADCLT 334 (355)
Q Consensus 283 ~i~i~~~~~~~~~nI~~~nV~i~~~~g~-~~~~c~n~~g~~~~~~~p~~~c~~ 334 (355)
++.|.|+++.||+||+|+||+|+.+.|. ..++|+|++|...++.+|+ .|++
T Consensus 342 a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~-~c~~ 393 (394)
T PLN02155 342 AMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPT-SCLN 393 (394)
T ss_pred eEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcc-cccC
Confidence 8999999999999999999999998665 5899999999999986665 5985
No 5
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.4e-62 Score=484.70 Aligned_cols=286 Identities=48% Similarity=0.865 Sum_probs=254.4
Q ss_pred ceEEEeeecCCCCCCCcchHHHHHHHHHHhhcC-CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCCCCCC
Q 042447 38 KVLVNVDSFGAAGDGVSDDTQAFLNAWNTACST-PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWD 116 (355)
Q Consensus 38 ~~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~-gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~~~~~ 116 (355)
+.++||+||||+|||++|||+|||+||++||+. ++++|+||+|++|+++++.|++|++++++|+++|+|++++++.+|+
T Consensus 65 ~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d~~~y~ 144 (431)
T PLN02218 65 PTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQKRSDYK 144 (431)
T ss_pred CcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCChhhcc
Confidence 479999999999999999999999999877875 5679999999779999999999999999999999999999998886
Q ss_pred ccCcceEEEEEeccCeEEecc--eEEECcCCccccCCCCC-------CC-------------------------------
Q 042447 117 PKLARIWLDFSKLNGVLFQGS--GVIDGSGSKWWASSCKK-------NK------------------------------- 156 (355)
Q Consensus 117 ~~~~~~~i~~~~~~ni~I~G~--G~IdG~G~~~~~~~~~~-------~~------------------------------- 156 (355)
. ...|+.+.+.+||+|+|. |+|||+|+.||...++. .+
T Consensus 145 ~--~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~~~~ 222 (431)
T PLN02218 145 D--ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEK 222 (431)
T ss_pred c--cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEEEEc
Confidence 3 357899999999999996 99999999999754311 11
Q ss_pred cccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccce
Q 042447 157 SESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGI 236 (355)
Q Consensus 157 ~~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~ 236 (355)
++||+|++++|++|.+.+|+||||+.+|+||+|+||.|.+|||||+||++++||+|+||+|.++||++|||+|++...+.
T Consensus 223 ~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~~~~~ 302 (431)
T PLN02218 223 CSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAF 302 (431)
T ss_pred eeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCCCCce
Confidence 18889999999998889999999999999999999999999999999999999999999999999999999998766788
Q ss_pred EEEEEEecceecCCceeEEEEEecc--------------------------------------CCeEEeeEEEEeEEEee
Q 042447 237 VTKVVLDTAYLRETANGLRIKTWQT--------------------------------------SAVKISQIMYRNISGTT 278 (355)
Q Consensus 237 v~nV~i~n~~~~~~~~gi~Ik~~~~--------------------------------------~~~~i~nItf~NI~g~~ 278 (355)
|+||+|+||++.++.+|+|||+|++ +.+.|+||+|+||+++.
T Consensus 303 V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gts 382 (431)
T PLN02218 303 VSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTS 382 (431)
T ss_pred EEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEe
Confidence 9999999999999999999999972 24567777777777776
Q ss_pred cCcccEEEEcCCCCceeCEEEEeEEEEeCCCcceeeeeeeEEeeceeccCC
Q 042447 279 KSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCNSAQGIGYGIVHPS 329 (355)
Q Consensus 279 ~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~g~~~~~c~n~~g~~~~~~~p~ 329 (355)
....++.|.|+++.||+||+|+||+|+.. ...|+|+.|...++.+|+
T Consensus 383 a~~~ai~l~cs~~~pc~nI~l~nV~i~~~----~~~c~n~~~~~~~~~~p~ 429 (431)
T PLN02218 383 ASDVAITFNCSKNYPCQGIVLDNVNIKGG----KATCTNANVVDKGAVSPQ 429 (431)
T ss_pred cCCcEEEEEECCCCCEeeEEEEeEEEECC----eeeEEEeeEEEcccCCCC
Confidence 65678899999999999999999999852 467999999999987775
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.5e-60 Score=467.31 Aligned_cols=292 Identities=39% Similarity=0.751 Sum_probs=254.2
Q ss_pred CCceEEEeeecCCCCCCCcchHHHHHHHHHHhhcC-CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCCCC
Q 042447 36 GGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACST-PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDN 114 (355)
Q Consensus 36 ~~~~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~-gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~~~ 114 (355)
..+.++||+||||+|||++|||+|||+||++||+. ||++|+||+|+ |+++++.|++||+....|++ +|++++++++
T Consensus 32 ~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~-yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~ 108 (404)
T PLN02188 32 SSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGT-YYIGPVQFHGPCTNVSSLTF--TLKAATDLSR 108 (404)
T ss_pred CCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCe-EEEEeEEeCCCcCcceeEEE--EEEcCCCHHH
Confidence 34579999999999999999999999999877875 46799999995 99999999999876555555 9999999999
Q ss_pred CCccCcceEEEEEeccCeEEecceEEECcCCccccCCC-C-----CCC-------------------------------c
Q 042447 115 WDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSC-K-----KNK-------------------------------S 157 (355)
Q Consensus 115 ~~~~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~~~-~-----~~~-------------------------------~ 157 (355)
|+. ...|+.+..+++|+|+|.|+|||+|+.||.... . ..+ +
T Consensus 109 y~~--~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~ 186 (404)
T PLN02188 109 YGS--GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVEC 186 (404)
T ss_pred CCC--ccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEcc
Confidence 974 356888888999999999999999999996321 0 011 2
Q ss_pred ccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccceE
Q 042447 158 ESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIV 237 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v 237 (355)
++|+|++++|++|.+.+|+||||+.+|++|+|+||+|.+|||||++|++++||+|+|++|.++|||+|||+|++.+.+.|
T Consensus 187 ~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V 266 (404)
T PLN02188 187 RNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDV 266 (404)
T ss_pred ccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcE
Confidence 88999999999988899999999999999999999999999999999999999999999999999999999987667789
Q ss_pred EEEEEecceecCCceeEEEEEec-----------------------------------------cCCeEEeeEEEEeEEE
Q 042447 238 TKVVLDTAYLRETANGLRIKTWQ-----------------------------------------TSAVKISQIMYRNISG 276 (355)
Q Consensus 238 ~nV~i~n~~~~~~~~gi~Ik~~~-----------------------------------------~~~~~i~nItf~NI~g 276 (355)
+||+|+||++.++.+|+|||+|. ++.+.|+||+|+||++
T Consensus 267 ~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~g 346 (404)
T PLN02188 267 TGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRG 346 (404)
T ss_pred EEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEE
Confidence 99999999999999999999984 1235688888888888
Q ss_pred eecCcccEEEEcCCCCceeCEEEEeEEEEeCCCc--ceeeeeeeEEeeceeccCCCCcc
Q 042447 277 TTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGT--VETYCNSAQGIGYGIVHPSADCL 333 (355)
Q Consensus 277 ~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~g~--~~~~c~n~~g~~~~~~~p~~~c~ 333 (355)
+.....++.|.|+++.||+||+|+||+|+...|. .++.|+|+.|...+..+|+ .|+
T Consensus 347 t~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~-~C~ 404 (404)
T PLN02188 347 TSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPP-PCP 404 (404)
T ss_pred EecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCC-CCC
Confidence 7766678899999999999999999999988553 4799999999999876665 586
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=2e-44 Score=347.15 Aligned_cols=243 Identities=35% Similarity=0.639 Sum_probs=191.4
Q ss_pred CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCCCCCCccCcceEEEEEeccCeEEecceEEECcCCccccC
Q 042447 71 PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWAS 150 (355)
Q Consensus 71 gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~ 150 (355)
++++|+||+|+ |+++++.|++|++....++++|.+.++.....|+ . ..||++.++++++|+|.|+|||+|+.||..
T Consensus 5 ~~~~v~vP~g~-~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~--~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~ 80 (326)
T PF00295_consen 5 GGGTVVVPAGT-YLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGP--N-SALIYAENAENITITGKGTIDGNGQAWWDG 80 (326)
T ss_dssp EEESEEESTST-EEEEETSEETECETTCEEEEESEEEEG-EESTSE----SEEEEEESEEEEECTTSSEEE--GGGTCSS
T ss_pred cCCEEEECCCC-eEEceeEEEcccCCCeEEEEEEEEEeCCCcccCC--c-cEEEEEEceEEEEecCCceEcCchhhhhcc
Confidence 45799999996 9999999998877899999999999885444443 2 688999999999999999999999999986
Q ss_pred CCC-----CCCc-------------------------------ccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEE
Q 042447 151 SCK-----KNKS-------------------------------ESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKI 194 (355)
Q Consensus 151 ~~~-----~~~~-------------------------------~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i 194 (355)
.+. ..++ +||++++++|+++...+|+||||+.+|+||+|+||+|
T Consensus 81 ~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i 160 (326)
T PF00295_consen 81 SGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFI 160 (326)
T ss_dssp CTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEE
T ss_pred ccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeec
Confidence 643 1111 7888888888887778999999999999999999999
Q ss_pred ecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCceeEEEEEeccCCe----------
Q 042447 195 GTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAV---------- 264 (355)
Q Consensus 195 ~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~~~~---------- 264 (355)
+++||||++|+++.||+|+||+|.++||++|||++.......|+||+|+||++.++.+|++||+|+..++
T Consensus 161 ~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni 240 (326)
T PF00295_consen 161 DNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITFENI 240 (326)
T ss_dssp ESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEEEEE
T ss_pred ccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEEEEE
Confidence 9999999999999999999999999999999999865444579999999999999999999999874444
Q ss_pred ----------------------------EEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEeCCCcceeeee
Q 042447 265 ----------------------------KISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCN 316 (355)
Q Consensus 265 ----------------------------~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~g~~~~~c~ 316 (355)
.|+||+|+||+++.....++.|.|.+..||+||+|+||+|+. |...+.|+
T Consensus 241 ~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g~~~~~c~ 318 (326)
T PF00295_consen 241 TMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--GKKPAQCK 318 (326)
T ss_dssp EEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--SBSESEEB
T ss_pred EecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--CCcCeEEE
Confidence 455555555555544334666777777777777777777776 45566677
Q ss_pred eeE
Q 042447 317 SAQ 319 (355)
Q Consensus 317 n~~ 319 (355)
|+.
T Consensus 319 nv~ 321 (326)
T PF00295_consen 319 NVP 321 (326)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.3e-34 Score=285.66 Aligned_cols=233 Identities=27% Similarity=0.482 Sum_probs=185.3
Q ss_pred CceEEEeeecCCCCCCCcchHHHHHHHHHHhhcCCCcEEEEcCCeEEEEeeeeeeccccccEEEEE--ceEEeecCCCCC
Q 042447 37 GKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQI--DGTIVAPAEPDN 114 (355)
Q Consensus 37 ~~~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~--~g~l~~~~~~~~ 114 (355)
....++|.+|||+|||.+|+++|||+||+++.+.+|++|+||+| ||+.++|.|| ++++|++ +++|+++.++.+
T Consensus 79 ~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~a~Gg~V~lPaG-tylsg~l~LK----S~~~L~l~egatl~~~~~p~~ 153 (542)
T COG5434 79 TDTAFSVSDDGAVGDGATDNTAAIQAAIDACASAGGGTVLLPAG-TYLSGPLFLK----SNVTLHLAEGATLLASSNPKD 153 (542)
T ss_pred ccceeeeccccccccCCccCHHHHHHHHHhhhhhcCceEEECCc-eeEeeeEEEe----cccEEEecCCceeeCCCChhh
Confidence 45689999999999999999999999999744467999999999 6999999998 5667666 359999999988
Q ss_pred CCc--------cC--------cceEEEE-------------EeccCeE-EecceEEECcC----CccccCCC-------C
Q 042447 115 WDP--------KL--------ARIWLDF-------------SKLNGVL-FQGSGVIDGSG----SKWWASSC-------K 153 (355)
Q Consensus 115 ~~~--------~~--------~~~~i~~-------------~~~~ni~-I~G~G~IdG~G----~~~~~~~~-------~ 153 (355)
|+. .. ....+.. ...++.. |.|.|+++|++ ..||.... .
T Consensus 154 y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i~~ 233 (542)
T COG5434 154 YPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIGG 233 (542)
T ss_pred ccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhcccc
Confidence 873 00 0111211 1234444 88899999974 22664432 0
Q ss_pred ---CC------Cc-----------------------ccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEecCCceE
Q 042447 154 ---KN------KS-----------------------ESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCI 201 (355)
Q Consensus 154 ---~~------~~-----------------------~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I 201 (355)
.. .+ +|++++|++|.+.... |+|||++.+|+||+|++|+|.+|||||
T Consensus 234 ~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I 312 (542)
T COG5434 234 KGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCI 312 (542)
T ss_pred cCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceE
Confidence 10 12 4555555555554434 999999999999999999999999999
Q ss_pred EeecC-----------CccEEEEeeEEcCCce-EEeccCCcccccceEEEEEEecceecCCceeEEEEEeccCCeEEeeE
Q 042447 202 SIVNG-----------SSAIKMKRIFCGPGHG-ISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQI 269 (355)
Q Consensus 202 ~ik~g-----------~~ni~i~n~~~~~~~G-i~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~~~~~i~nI 269 (355)
++|++ ++++.|+||++..+|| +.+||+ +.+.|+||++|||.|.++.+|+|||+....++.++||
T Consensus 313 ~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI 388 (542)
T COG5434 313 AIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNI 388 (542)
T ss_pred EeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecccceeEEEE
Confidence 99987 5789999999999996 889998 6778999999999999999999999999888999999
Q ss_pred EEEeEEEeec
Q 042447 270 MYRNISGTTK 279 (355)
Q Consensus 270 tf~NI~g~~~ 279 (355)
+|+++.+...
T Consensus 389 ~~~~~~~~nv 398 (542)
T COG5434 389 VFEDNKMRNV 398 (542)
T ss_pred EEecccccCc
Confidence 9999987654
No 9
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.84 E-value=8.6e-20 Score=165.52 Aligned_cols=60 Identities=35% Similarity=0.586 Sum_probs=46.9
Q ss_pred EEEeeecCCCCCCCcchHHHHHHHHHHhhcCCCcEEEEcCCeEEEEee-eeeeccccccEEEEEce
Q 042447 40 LVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSA-TRFKGPCADKLVIQIDG 104 (355)
Q Consensus 40 ~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~gg~~V~iP~G~tY~i~~-~~l~~p~~~~~~l~~~g 104 (355)
++||++|||+|||++|||+|||+||+++...++++||||+|+ |++.. +.++ ++++|..+|
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~~~g~~v~~P~G~-Y~i~~~l~~~----s~v~l~G~g 61 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAAAGGGVVYFPPGT-YRISGTLIIP----SNVTLRGAG 61 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCSTTSEEEEE-SEE-EEESS-EEE-----TTEEEEESS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcccCCCeEEEEcCcE-EEEeCCeEcC----CCeEEEccC
Confidence 479999999999999999999999966666779999999995 99887 5554 578888865
No 10
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.77 E-value=4.9e-17 Score=158.67 Aligned_cols=132 Identities=14% Similarity=0.218 Sum_probs=94.2
Q ss_pred CCceEEEeeecCCCCCCCcchHHHHHHHHHHhhcCCCcEEEEcCCeEEEEeeeeeeccccccEEEEEce-EEeecCCCCC
Q 042447 36 GGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDG-TIVAPAEPDN 114 (355)
Q Consensus 36 ~~~~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g-~l~~~~~~~~ 114 (355)
.+.+.+|+++|||++||++|+|+|||+||++ |+.++++|.+|+|+ |+.+++.|+. +++|.... .... .
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAIda-Aa~gG~tV~Lp~G~-Y~~G~L~L~s----pltL~G~~gAt~~-----v 101 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAIDE-AARAQTPLALPPGV-YRTGPLRLPS----GAQLIGVRGATRL-----V 101 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHHH-hhcCCCEEEECCCc-eecccEEECC----CcEEEecCCcEEE-----E
Confidence 4556799999999999999999999999996 45457889999996 9989888874 55665542 2100 0
Q ss_pred CCccCcceEEEEEeccCeEEecceEEECcCCccccCCC--CCCCcccEEEEEEEEeCCCCCCCCceeeecCcc
Q 042447 115 WDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSC--KKNKSESVRVYQVLVSAPEDSPNTDGIHITEST 185 (355)
Q Consensus 115 ~~~~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~~~--~~~~~~nv~i~~v~I~~~~~~~n~DGi~~~~s~ 185 (355)
+.. ...++...+.++|+|+|. +|+|+|..|..... .-..+++++|++++|..... .||.+..|+
T Consensus 102 IdG--~~~lIiai~A~nVTIsGL-tIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~----FGI~L~~~~ 167 (455)
T TIGR03808 102 FTG--GPSLLSSEGADGIGLSGL-TLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGG----NGIWLETVS 167 (455)
T ss_pred EcC--CceEEEEecCCCeEEEee-EEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCc----ceEEEEcCc
Confidence 111 135555667899999997 99999987644321 01345899999999987531 256665555
No 11
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.33 E-value=1.2e-10 Score=115.38 Aligned_cols=213 Identities=16% Similarity=0.251 Sum_probs=118.4
Q ss_pred CcEEEEcCCeEEEEee-eeeecccc-ccEEEEEceEEeecCCCCCCCccCcceEEEEEeccCeEEecceEEECcCCcccc
Q 042447 72 KSVFLVPAGRHYLVSA-TRFKGPCA-DKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLFQGSGVIDGSGSKWWA 149 (355)
Q Consensus 72 g~~V~iP~G~tY~i~~-~~l~~p~~-~~~~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~ 149 (355)
..++||+||. |.++. -.+++|+. .-++|.-++-+++ ++.+.....++.|.|.|++.|.-..|..
T Consensus 232 ~~~lYF~PGV-y~ig~~~~l~L~sn~~~VYlApGAyVkG-------------Af~~~~~~~nv~i~G~GVLSGe~Yvy~A 297 (582)
T PF03718_consen 232 KDTLYFKPGV-YWIGSDYHLRLPSNTKWVYLAPGAYVKG-------------AFEYTDTQQNVKITGRGVLSGEQYVYEA 297 (582)
T ss_dssp SSEEEE-SEE-EEEBCTC-EEE-TT--EEEE-TTEEEES--------------EEE---SSEEEEESSSEEE-TTS-TTB
T ss_pred cceEEeCCce-EEeCCCccEEECCCccEEEEcCCcEEEE-------------EEEEccCCceEEEEeeEEEcCcceeEec
Confidence 4699999995 88876 23444422 2334443333322 2333456789999999999988666532
Q ss_pred CCC------------C-----------CCCcccEEEEEEEEeCCC--------------------------CCCCCceee
Q 042447 150 SSC------------K-----------KNKSESVRVYQVLVSAPE--------------------------DSPNTDGIH 180 (355)
Q Consensus 150 ~~~------------~-----------~~~~~nv~i~~v~I~~~~--------------------------~~~n~DGi~ 180 (355)
... . ....+++.+.+++|.+|+ ...++|||.
T Consensus 298 ~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ 377 (582)
T PF03718_consen 298 DTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIE 377 (582)
T ss_dssp BCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B
T ss_pred cCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEEeccCCcc
Confidence 111 0 011267778888877653 235899999
Q ss_pred ecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCc---eEEeccCCcccccceEEEEEEecceecCC-------
Q 042447 181 ITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGH---GISIGSLGKDNSMGIVTKVVLDTAYLRET------- 250 (355)
Q Consensus 181 ~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~---Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~------- 250 (355)
+. ++-+|+||++++.||+|-+. ..++.++||++|..+ -+.+|-. ...++||.|+|+.+..+
T Consensus 378 ly--~nS~i~dcF~h~nDD~iKlY--hS~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~~~ 448 (582)
T PF03718_consen 378 LY--PNSTIRDCFIHVNDDAIKLY--HSNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWHNN 448 (582)
T ss_dssp ----TT-EEEEEEEEESS-SEE----STTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSGGC
T ss_pred cc--CCCeeeeeEEEecCchhhee--ecCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecccC
Confidence 96 78889999999999999664 489999999998643 3777654 33578999999997544
Q ss_pred --ceeEEEEE--ec--------cCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEeCCC
Q 042447 251 --ANGLRIKT--WQ--------TSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDG 309 (355)
Q Consensus 251 --~~gi~Ik~--~~--------~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~g 309 (355)
..+|..-+ |. ....+|++++|+|++.+....-.+.|.. -....|+.++||++..-.|
T Consensus 449 ~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p--lqn~~nl~ikN~~~~~w~~ 517 (582)
T PF03718_consen 449 YVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYP--LQNYDNLVIKNVHFESWNG 517 (582)
T ss_dssp TTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEECEET-
T ss_pred CCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEee--cCCCcceEEEEeecccccC
Confidence 22332221 10 1234789999999998765444455543 2345678899999885433
No 12
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.21 E-value=2.9e-09 Score=102.39 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=113.7
Q ss_pred HHHHHHHhhcCCCcEEEEcCCeEEEE-eeeeeeccccccEEEEEce---E-EeecCCCCCCCccCcceEEEEEeccCeEE
Q 042447 60 FLNAWNTACSTPKSVFLVPAGRHYLV-SATRFKGPCADKLVIQIDG---T-IVAPAEPDNWDPKLARIWLDFSKLNGVLF 134 (355)
Q Consensus 60 iq~Ai~~a~~~gg~~V~iP~G~tY~i-~~~~l~~p~~~~~~l~~~g---~-l~~~~~~~~~~~~~~~~~i~~~~~~ni~I 134 (355)
||+|+++|. .|.+|+||+|+ |.+ .++.+. +++++|...| + |.+.... .. ...+.. ..++|+|
T Consensus 1 iQ~Ai~~A~--~GDtI~l~~G~-Y~~~~~l~I~---~~~Iti~G~g~~~tvid~~~~~-----~~-~~~i~v-~a~~VtI 67 (314)
T TIGR03805 1 LQEALIAAQ--PGDTIVLPEGV-FQFDRTLSLD---ADGVTIRGAGMDETILDFSGQV-----GG-AEGLLV-TSDDVTL 67 (314)
T ss_pred CHhHHhhCC--CCCEEEECCCE-EEcceeEEEe---CCCeEEEecCCCccEEecccCC-----CC-CceEEE-EeCCeEE
Confidence 699999644 37899999995 886 455554 2578887765 2 2222211 00 112222 3578888
Q ss_pred ecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCC---CCCCCceeeecCcccEEEEeeEEec-CCceEEeecCCccE
Q 042447 135 QGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPE---DSPNTDGIHITESTNVVLQDCKIGT-GDDCISIVNGSSAI 210 (355)
Q Consensus 135 ~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~---~~~n~DGi~~~~s~nv~I~n~~i~~-gDD~I~ik~g~~ni 210 (355)
+|..+.+..+...+.. .+++++|+++++.-.. .....+||.+..|++++|++|.++. .|++|.++ .++++
T Consensus 68 ~~ltI~~~~~~GI~v~-----~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~-~s~~~ 141 (314)
T TIGR03805 68 SDLAVENTKGDGVKVK-----GSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVG-QSQNI 141 (314)
T ss_pred EeeEEEcCCCCeEEEe-----CCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEEC-CCCCe
Confidence 8754433323322222 2389999999996321 1234689999999999999999976 45689984 67899
Q ss_pred EEEeeEEcCC-ceEEeccCCcccccceEEEEEEecceecCCceeEEEE
Q 042447 211 KMKRIFCGPG-HGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 211 ~i~n~~~~~~-~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
+|+|+++... .||-+-. ..++.++++.+.+...|+.+-
T Consensus 142 ~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~ 180 (314)
T TIGR03805 142 VVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVF 180 (314)
T ss_pred EEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEe
Confidence 9999999754 4777632 246788888888877898884
No 13
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=99.16 E-value=3.6e-10 Score=104.08 Aligned_cols=266 Identities=18% Similarity=0.306 Sum_probs=148.2
Q ss_pred CCCcccccCCCceEEEeeecCCCCCCCcchHHHHHHHHHHh----------hcCCCcEEEEcCCeEEEEeeeeeeccccc
Q 042447 27 EEPSWTSERGGKVLVNVDSFGAAGDGVSDDTQAFLNAWNTA----------CSTPKSVFLVPAGRHYLVSATRFKGPCAD 96 (355)
Q Consensus 27 ~~~~~~~~~~~~~~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a----------~~~gg~~V~iP~G~tY~i~~~~l~~p~~~ 96 (355)
+.|.+.+.+ +..++||.||-. .|-.++|.+|+.++ |..-..-+++|+|+|.++.. .|++..+.
T Consensus 22 hsp~~ra~~-~~~~vni~dy~~-----~dwiasfkqaf~e~qtvvvpagl~cenint~ifip~gktl~v~g-~l~gngrg 94 (464)
T PRK10123 22 HTPFARALP-ARQSVNINDYNP-----HDWIASFKQAFSEGQTVVVPAGLVCDNINTGIFIPPGKTLHILG-SLRGNGRG 94 (464)
T ss_pred cCHhhhhcC-CCceeehhhcCc-----ccHHHHHHHHhccCcEEEecCccEecccccceEeCCCCeEEEEE-EeecCCce
Confidence 445444443 346899999964 68889999999863 22222334555555444432 33333222
Q ss_pred cEEEEEceEEeecCCCCCCCccCcceEEEEEe----ccCeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCC
Q 042447 97 KLVIQIDGTIVAPAEPDNWDPKLARIWLDFSK----LNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPED 172 (355)
Q Consensus 97 ~~~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~----~~ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~ 172 (355)
...|+.+..+.+....+.. ..-+...+ ++++..+|.|-+. + .|-.-.+....+|+.|+++++....+
T Consensus 95 rfvlqdg~qv~ge~~g~~h-----nitldvrgsdc~ikgiamsgfgpvt---q-iyiggk~prvmrnl~id~itv~~any 165 (464)
T PRK10123 95 RFVLQDGSQVTGEEGGSMH-----NITLDVRGSDCTIKGLAMSGFGPVT---Q-IYIGGKNKRVMRNLTIDNLTVSHANY 165 (464)
T ss_pred eEEEecCCEeecCCCceee-----eEEEeeccCceEEeeeeecccCcee---E-EEEcCCCchhhhccEEccEEEeeccH
Confidence 2233322222221111000 00011111 1223333333110 1 11111122345899999999986544
Q ss_pred CCCCceeeecCcccEEEEeeEEec-CCceEEeec--CCccE-----EEEeeEEcCC---ceEEeccCCc-----ccccce
Q 042447 173 SPNTDGIHITESTNVVLQDCKIGT-GDDCISIVN--GSSAI-----KMKRIFCGPG---HGISIGSLGK-----DNSMGI 236 (355)
Q Consensus 173 ~~n~DGi~~~~s~nv~I~n~~i~~-gDD~I~ik~--g~~ni-----~i~n~~~~~~---~Gi~iGS~g~-----~~~~~~ 236 (355)
.--..|++-. -+.++|.||.|.. +.|+|...- ..+++ +|+.+.|..+ +||.||-.|. |+....
T Consensus 166 ailrqgfhnq-~dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctngkinwgigiglagstydn~ype~q~ 244 (464)
T PRK10123 166 AILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQA 244 (464)
T ss_pred HHHhhhhhhc-cccceeeccccccccCceEEEEEEecccceeeehheheeecccCCcccceeeeeeccccccCCCchhhh
Confidence 3334566654 4778899999954 556553211 22344 4566667543 5888876553 444567
Q ss_pred EEEEEEecceecCCceeEEEEEeccCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEeCCCcc
Q 042447 237 VTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTV 311 (355)
Q Consensus 237 v~nV~i~n~~~~~~~~gi~Ik~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~g~~ 311 (355)
|+|..+.|++-.+|..-+.+.. +....|+||.-+||+-.-..+.+|.-...+-..|.|+.++||++....|+.
T Consensus 245 vknfvvanitgs~crqlvhven--gkhfvirnvkaknitpdfskkagidnatvaiygcdnfvidni~mvnsagml 317 (464)
T PRK10123 245 VKNFVVANITGSDCRQLIHVEN--GKHFVIRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGML 317 (464)
T ss_pred hhhEEEEeccCcChhheEEecC--CcEEEEEeeeccccCCCchhhcCCCcceEEEEcccceEEeccccccccccE
Confidence 8999999999888877766653 566789999999998654333332221222234779999999999988873
No 14
>PLN02218 polygalacturonase ADPG
Probab=99.13 E-value=1.3e-09 Score=108.46 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=103.8
Q ss_pred EEEEEEeCCCCCCCCceeeecCcccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCC-ceEEeccCCcccccc
Q 042447 162 VYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPG-HGISIGSLGKDNSMG 235 (355)
Q Consensus 162 i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~-~Gi~iGS~g~~~~~~ 235 (355)
|+++++.+++.+ -+.+..|+||+|+|.+|.+ .-|+|.+ ..++||+|+||++..+ ..|+|++-
T Consensus 205 I~gitl~nSp~w----~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi-~ss~nV~I~n~~I~tGDDcIaIksg------- 272 (431)
T PLN02218 205 VKNLRVRNAQQI----QISIEKCSNVQVSNVVVTAPADSPNTDGIHI-TNTQNIRVSNSIIGTGDDCISIESG------- 272 (431)
T ss_pred EeCeEEEcCCCE----EEEEEceeeEEEEEEEEeCCCCCCCCCcEee-cccceEEEEccEEecCCceEEecCC-------
Confidence 455566555443 4788889999999999975 4589999 6789999999999865 58999873
Q ss_pred eEEEEEEecceecCCceeEEEEEecc--CCeEEeeEEEEeEEEeecCcccEEEEcCCC--CceeCEEEEeEEEEeCCCc
Q 042447 236 IVTKVVLDTAYLRETANGLRIKTWQT--SAVKISQIMYRNISGTTKSSKAMKFACSDT--VPCSDIVLSNVNLEKKDGT 310 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~~~gi~Ik~~~~--~~~~i~nItf~NI~g~~~~~~~i~i~~~~~--~~~~nI~~~nV~i~~~~g~ 310 (355)
.+||+|+||++.. ..|+.|.+-.. ....|+||+++|++.... ..++.|....+ +.++||+|+||.|+....+
T Consensus 273 -s~nI~I~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t-~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~p 348 (431)
T PLN02218 273 -SQNVQINDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLSGT-DNGVRIKTYQGGSGTASNIIFQNIQMENVKNP 348 (431)
T ss_pred -CceEEEEeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEecC-CcceEEeecCCCCeEEEEEEEEeEEEEccccc
Confidence 3799999999965 57888875321 235799999999998764 56888876543 5899999999999986554
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.09 E-value=2.9e-09 Score=102.98 Aligned_cols=131 Identities=18% Similarity=0.285 Sum_probs=96.6
Q ss_pred EEEEEeCCCCCCCCceeeecCcccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCC-ceEEeccCCcccccce
Q 042447 163 YQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPG-HGISIGSLGKDNSMGI 236 (355)
Q Consensus 163 ~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~-~Gi~iGS~g~~~~~~~ 236 (355)
+++++.+++.+ .+.+..|++|.|++..|.+ .-|+|.+ .+++||+|+||++..+ .+|++++.
T Consensus 106 ~~i~~~nsp~w----~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~-~~s~nv~I~n~~i~~gDD~Iaiks~-------- 172 (326)
T PF00295_consen 106 EGITIRNSPFW----HIHINDCDNVTISNITINNPANSPNTDGIDI-DSSKNVTIENCFIDNGDDCIAIKSG-------- 172 (326)
T ss_dssp ESEEEES-SSE----SEEEESEEEEEEESEEEEEGGGCTS--SEEE-ESEEEEEEESEEEESSSESEEESSE--------
T ss_pred EeeEecCCCee----EEEEEccCCeEEcceEEEecCCCCCcceEEE-EeeeEEEEEEeecccccCccccccc--------
Confidence 44455554433 4778889999999999975 3589999 5789999999999765 58999774
Q ss_pred EEEEEEecceecCCceeEEEEEeccCC--eEEeeEEEEeEEEeecCcccEEEEcC--CCCceeCEEEEeEEEEeCC
Q 042447 237 VTKVVLDTAYLRETANGLRIKTWQTSA--VKISQIMYRNISGTTKSSKAMKFACS--DTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 237 v~nV~i~n~~~~~~~~gi~Ik~~~~~~--~~i~nItf~NI~g~~~~~~~i~i~~~--~~~~~~nI~~~nV~i~~~~ 308 (355)
-.||+++||++.. ..|+.|.+....+ ..|+||+|+|++.... ..++.|... ..+.++||+|+|+.|+...
T Consensus 173 ~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t-~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~ 246 (326)
T PF00295_consen 173 SGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTIINT-DNGIRIKTWPGGGGYVSNITFENITMENVK 246 (326)
T ss_dssp ECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEESE-SEEEEEEEETTTSEEEEEEEEEEEEEEEES
T ss_pred ccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEeecc-ceEEEEEEecccceEEeceEEEEEEecCCc
Confidence 1399999999976 4779888754332 2699999999998764 467777653 3467888888888887644
No 16
>PLN02793 Probable polygalacturonase
Probab=99.06 E-value=4.7e-09 Score=104.97 Aligned_cols=134 Identities=17% Similarity=0.201 Sum_probs=101.1
Q ss_pred EEEEEEeCCCCCCCCceeeecCcccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCC-ceEEeccCCcccccc
Q 042447 162 VYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPG-HGISIGSLGKDNSMG 235 (355)
Q Consensus 162 i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~-~Gi~iGS~g~~~~~~ 235 (355)
|+++++.+++.+ -+.+..|++|+|++.+|.+ .-|+|.+ ..++||+|+||++..+ .+|+|++.
T Consensus 190 v~gitl~nSp~~----~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi-~~s~nV~I~n~~I~~gDDcIaik~~------- 257 (443)
T PLN02793 190 VENLNVIDSQQM----HIAFTNCRRVTISGLKVIAPATSPNTDGIHI-SASRGVVIKDSIVRTGDDCISIVGN------- 257 (443)
T ss_pred EECeEEEcCCCe----EEEEEccCcEEEEEEEEECCCCCCCCCcEee-eccceEEEEeCEEeCCCCeEEecCC-------
Confidence 455555554432 4778889999999999975 4489999 6789999999999765 58999763
Q ss_pred eEEEEEEecceecCCceeEEEEEec--cCCeEEeeEEEEeEEEeecCcccEEEEcCC--CCceeCEEEEeEEEEeCCCc
Q 042447 236 IVTKVVLDTAYLRETANGLRIKTWQ--TSAVKISQIMYRNISGTTKSSKAMKFACSD--TVPCSDIVLSNVNLEKKDGT 310 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~~~gi~Ik~~~--~~~~~i~nItf~NI~g~~~~~~~i~i~~~~--~~~~~nI~~~nV~i~~~~g~ 310 (355)
.+||+|+||++... .|+.|.+-. .....|+||+++|++.... ..++.|.... .+.++||+|+||.++....+
T Consensus 258 -s~nI~I~n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~~~t-~~GirIKt~~g~~G~v~nItf~ni~m~nv~~p 333 (443)
T PLN02793 258 -SSRIKIRNIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFLSNT-DNGVRIKTWQGGSGNASKITFQNIFMENVSNP 333 (443)
T ss_pred -cCCEEEEEeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEEeCC-CceEEEEEeCCCCEEEEEEEEEeEEEecCCce
Confidence 37999999998654 688887632 2335699999999988764 5677776543 35789999999999876654
No 17
>PLN02155 polygalacturonase
Probab=99.05 E-value=5.4e-09 Score=103.03 Aligned_cols=136 Identities=13% Similarity=0.183 Sum_probs=102.0
Q ss_pred EEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCC-ceEEeccCCcccc
Q 042447 160 VRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPG-HGISIGSLGKDNS 233 (355)
Q Consensus 160 v~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~-~Gi~iGS~g~~~~ 233 (355)
++|+++++.+++.+ -+.+..|++|+|++++|.+ .-|+|.+ ..++||+|+||++..+ .+|+|++-
T Consensus 156 v~i~gitl~nSp~w----~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi-~~s~nV~I~~~~I~~gDDcIaik~g----- 225 (394)
T PLN02155 156 VIISGVKSMNSQVS----HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHV-QFSTGVTFTGSTVQTGDDCVAIGPG----- 225 (394)
T ss_pred EEEECeEEEcCCCe----EEEEECeeeEEEEEEEEECCCCCCCCCcccc-ccceeEEEEeeEEecCCceEEcCCC-----
Confidence 44566666655433 4777889999999999965 2388988 5789999999999865 58999763
Q ss_pred cceEEEEEEecceecCCceeEEEEEec--cCCeEEeeEEEEeEEEeecCcccEEEEc---CCCCceeCEEEEeEEEEeCC
Q 042447 234 MGIVTKVVLDTAYLRETANGLRIKTWQ--TSAVKISQIMYRNISGTTKSSKAMKFAC---SDTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 234 ~~~v~nV~i~n~~~~~~~~gi~Ik~~~--~~~~~i~nItf~NI~g~~~~~~~i~i~~---~~~~~~~nI~~~nV~i~~~~ 308 (355)
.+||+|+||++.. ..|+.|.+-. .....|+||+++|++.... ..++.|.. ..++.++||+|+||.|+...
T Consensus 226 ---s~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t-~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~ 300 (394)
T PLN02155 226 ---TRNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFTGS-QNGVRIKSWARPSTGFVRNVFFQDLVMKNVE 300 (394)
T ss_pred ---CceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEeCC-CcEEEEEEecCCCCEEEEEEEEEeEEEcCcc
Confidence 3799999999976 4788887641 1245789999999988764 56777754 24577899999999888765
Q ss_pred Cc
Q 042447 309 GT 310 (355)
Q Consensus 309 g~ 310 (355)
.+
T Consensus 301 ~p 302 (394)
T PLN02155 301 NP 302 (394)
T ss_pred cc
Confidence 44
No 18
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.04 E-value=6.3e-09 Score=102.94 Aligned_cols=136 Identities=16% Similarity=0.209 Sum_probs=102.8
Q ss_pred EEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCC-ceEEeccCCcccc
Q 042447 160 VRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPG-HGISIGSLGKDNS 233 (355)
Q Consensus 160 v~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~-~Gi~iGS~g~~~~ 233 (355)
+.|+++++.+++.+ .+.+..|++|+|++.+|.+ .-|+|.+ ..+++|+|+||++..+ .+|++++-
T Consensus 166 v~i~gitl~nSp~w----~i~~~~~~~v~i~~v~I~~~~~spNtDGidi-~~s~nV~I~n~~I~~GDDcIaiksg----- 235 (404)
T PLN02188 166 TVVRGITSVNSKFF----HIALVECRNFKGSGLKISAPSDSPNTDGIHI-ERSSGVYISDSRIGTGDDCISIGQG----- 235 (404)
T ss_pred EEEeCeEEEcCCCe----EEEEEccccEEEEEEEEeCCCCCCCCCcEee-eCcccEEEEeeEEeCCCcEEEEccC-----
Confidence 56777777776554 5888889999999999975 4589999 5789999999999865 58999763
Q ss_pred cceEEEEEEecceecCCceeEEEEEec--cCCeEEeeEEEEeEEEeecCcccEEEEcC----CCCceeCEEEEeEEEEeC
Q 042447 234 MGIVTKVVLDTAYLRETANGLRIKTWQ--TSAVKISQIMYRNISGTTKSSKAMKFACS----DTVPCSDIVLSNVNLEKK 307 (355)
Q Consensus 234 ~~~v~nV~i~n~~~~~~~~gi~Ik~~~--~~~~~i~nItf~NI~g~~~~~~~i~i~~~----~~~~~~nI~~~nV~i~~~ 307 (355)
-+||+|+|+.+... .|+.|.+-. .....|+||+|+|++.... ..++.|... ..+.++||+|+||.|+..
T Consensus 236 ---~~nI~I~n~~c~~g-hGisiGSlG~~~~~~~V~nV~v~n~~~~~t-~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v 310 (404)
T PLN02188 236 ---NSQVTITRIRCGPG-HGISVGSLGRYPNEGDVTGLVVRDCTFTGT-TNGIRIKTWANSPGKSAATNMTFENIVMNNV 310 (404)
T ss_pred ---CccEEEEEEEEcCC-CcEEeCCCCCCCcCCcEEEEEEEeeEEECC-CcEEEEEEecCCCCceEEEEEEEEeEEecCc
Confidence 26899999998654 788886521 1234689999999988764 567777532 235688899998888875
Q ss_pred CCc
Q 042447 308 DGT 310 (355)
Q Consensus 308 ~g~ 310 (355)
..+
T Consensus 311 ~~p 313 (404)
T PLN02188 311 TNP 313 (404)
T ss_pred cce
Confidence 544
No 19
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.03 E-value=6.3e-09 Score=103.72 Aligned_cols=137 Identities=15% Similarity=0.220 Sum_probs=104.7
Q ss_pred cEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCC-ceEEeccCCccc
Q 042447 159 SVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPG-HGISIGSLGKDN 232 (355)
Q Consensus 159 nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~-~Gi~iGS~g~~~ 232 (355)
|+.|+++++.+++.+ -+.+..|++|+|++..|.+ .-|+|.+ ..++||+|+||++..+ .+|+|++-
T Consensus 148 nv~I~gitl~NSp~w----~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi-~~S~nV~I~n~~I~tGDDCIaiksg---- 218 (456)
T PLN03003 148 NLRLSGLTHLDSPMA----HIHISECNYVTISSLRINAPESSPNTDGIDV-GASSNVVIQDCIIATGDDCIAINSG---- 218 (456)
T ss_pred CcEEeCeEEecCCcE----EEEEeccccEEEEEEEEeCCCCCCCCCcEee-cCcceEEEEecEEecCCCeEEeCCC----
Confidence 566777777765543 4788889999999999976 3489999 6789999999999865 58999773
Q ss_pred ccceEEEEEEecceecCCceeEEEEEecc--CCeEEeeEEEEeEEEeecCcccEEEEcCCC--CceeCEEEEeEEEEeCC
Q 042447 233 SMGIVTKVVLDTAYLRETANGLRIKTWQT--SAVKISQIMYRNISGTTKSSKAMKFACSDT--VPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 233 ~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~--~~~~i~nItf~NI~g~~~~~~~i~i~~~~~--~~~~nI~~~nV~i~~~~ 308 (355)
.+||+|+||++.. ..||.|.+-.. ....|+||+++|++.... ..++.|...++ +.++||+|+||.++...
T Consensus 219 ----s~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T-~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~ 292 (456)
T PLN03003 219 ----TSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFRGT-MNGARIKTWQGGSGYARMITFNGITLDNVE 292 (456)
T ss_pred ----CccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEECC-CcEEEEEEeCCCCeEEEEEEEEeEEecCcc
Confidence 3799999999865 47898876432 124689999999988764 56777765433 47889999999888654
Q ss_pred Cc
Q 042447 309 GT 310 (355)
Q Consensus 309 g~ 310 (355)
-+
T Consensus 293 ~p 294 (456)
T PLN03003 293 NP 294 (456)
T ss_pred ce
Confidence 43
No 20
>PLN03010 polygalacturonase
Probab=98.93 E-value=3.5e-08 Score=97.58 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=104.3
Q ss_pred cccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCC-ceEEeccCCc
Q 042447 157 SESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPG-HGISIGSLGK 230 (355)
Q Consensus 157 ~~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~-~Gi~iGS~g~ 230 (355)
++|++|+++++.+++.+ -+.+..|++|+|++.+|.+ .-|+|.+ ..+++|+|+||++..+ .+|+|++-.
T Consensus 165 ~~nv~v~gitl~nsp~~----~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi-~~s~nV~I~n~~I~~gDDcIaiksgs- 238 (409)
T PLN03010 165 CDNLTINGITSIDSPKN----HISIKTCNYVAISKINILAPETSPNTDGIDI-SYSTNINIFDSTIQTGDDCIAINSGS- 238 (409)
T ss_pred ecCeEEeeeEEEcCCce----EEEEeccccEEEEEEEEeCCCCCCCCCceee-eccceEEEEeeEEecCCCeEEecCCC-
Confidence 49999999999987654 4888899999999999975 4589998 5789999999999865 589998731
Q ss_pred ccccceEEEEEEecceecCCceeEEEEEecc--CCeEEeeEEEEeEEEeecCcccEEEEcCC--CCceeCEEEEeEEEEe
Q 042447 231 DNSMGIVTKVVLDTAYLRETANGLRIKTWQT--SAVKISQIMYRNISGTTKSSKAMKFACSD--TVPCSDIVLSNVNLEK 306 (355)
Q Consensus 231 ~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~--~~~~i~nItf~NI~g~~~~~~~i~i~~~~--~~~~~nI~~~nV~i~~ 306 (355)
.++.|+++++.. ..|+.|.+-.. ....|+||+|+|++.... ..++.|...+ .+.++||+|+||.|+.
T Consensus 239 -------~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t-~~GirIKt~~G~~G~v~nItf~nI~m~~ 309 (409)
T PLN03010 239 -------SNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQT-TNGARIKTWQGGQGYARNISFENITLIN 309 (409)
T ss_pred -------CcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCC-CcceEEEEecCCCEEEEEeEEEeEEEec
Confidence 345555555543 46888876422 224599999999988764 4677765433 4578999999999987
Q ss_pred CCCc
Q 042447 307 KDGT 310 (355)
Q Consensus 307 ~~g~ 310 (355)
..-+
T Consensus 310 v~~p 313 (409)
T PLN03010 310 TKNP 313 (409)
T ss_pred CCcc
Confidence 5544
No 21
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=98.58 E-value=1.1e-06 Score=89.18 Aligned_cols=128 Identities=14% Similarity=0.211 Sum_probs=97.0
Q ss_pred ceeeecCcccEEEEeeEEecCC----ceEEeecCCccEEEEeeEEcCC-ceEEeccCCcc---cccceEEEEEEecceec
Q 042447 177 DGIHITESTNVVLQDCKIGTGD----DCISIVNGSSAIKMKRIFCGPG-HGISIGSLGKD---NSMGIVTKVVLDTAYLR 248 (355)
Q Consensus 177 DGi~~~~s~nv~I~n~~i~~gD----D~I~ik~g~~ni~i~n~~~~~~-~Gi~iGS~g~~---~~~~~v~nV~i~n~~~~ 248 (355)
-++++..|.+++|+|.+|.+.+ |++.+ ..|+|++|++|++..+ ..|.+.|-... .....-++++|+||+|.
T Consensus 262 ~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~-~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~ 340 (542)
T COG5434 262 WTVHPVDCDNLTFRNLTIDANRFDNTDGFDP-GSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFS 340 (542)
T ss_pred EEEeeecccCceecceEEECCCCCCCCcccc-ccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceec
Confidence 4688888999999999997654 48888 5789999999999765 47887763211 12344589999999999
Q ss_pred CCceeEEEEEeccCCeEEeeEEEEeEEEeecCcccEEEEcCC--CCceeCEEEEeEEEEeCC
Q 042447 249 ETANGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSD--TVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 249 ~~~~gi~Ik~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~--~~~~~nI~~~nV~i~~~~ 308 (355)
..-.++.+.+|.. +.|+||+++|+.+.. ..+++.|.-.. ++.++||+|+++.+....
T Consensus 341 ~ghG~~v~Gse~~--ggv~ni~ved~~~~~-~d~GLRikt~~~~gG~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 341 SGHGGLVLGSEMG--GGVQNITVEDCVMDN-TDRGLRIKTNDGRGGGVRNIVFEDNKMRNVK 399 (542)
T ss_pred ccccceEeeeecC--CceeEEEEEeeeecc-CcceeeeeeecccceeEEEEEEecccccCcc
Confidence 7767777777644 469999999998876 36777776543 367888888888877654
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.43 E-value=9.5e-06 Score=78.10 Aligned_cols=114 Identities=20% Similarity=0.360 Sum_probs=85.1
Q ss_pred cCeEEecce----EEECcCCccccCCCCCCCcccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEe--------cC
Q 042447 130 NGVLFQGSG----VIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIG--------TG 197 (355)
Q Consensus 130 ~ni~I~G~G----~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~--------~g 197 (355)
++++|.|.| +||+.++..- ...-....++|+|++++|.... .+||.+..|++++|+++++. ++
T Consensus 32 ~~Iti~G~g~~~tvid~~~~~~~-~~~i~v~a~~VtI~~ltI~~~~----~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~ 106 (314)
T TIGR03805 32 DGVTIRGAGMDETILDFSGQVGG-AEGLLVTSDDVTLSDLAVENTK----GDGVKVKGSDGIIIRRLRVEWTGGPKSSNG 106 (314)
T ss_pred CCeEEEecCCCccEEecccCCCC-CceEEEEeCCeEEEeeEEEcCC----CCeEEEeCCCCEEEEeeEEEeccCccccCC
Confidence 567777755 4776654210 0000112389999999998743 36999999999999999996 56
Q ss_pred CceEEeecCCccEEEEeeEEcCC--ceEEeccCCcccccceEEEEEEecceecCCceeEEEEE
Q 042447 198 DDCISIVNGSSAIKMKRIFCGPG--HGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKT 258 (355)
Q Consensus 198 DD~I~ik~g~~ni~i~n~~~~~~--~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~ 258 (355)
.++|.+ ..+++++|++|++.+. .||.++. .+++.|+|++++...+||.+..
T Consensus 107 ~~GI~~-~~s~~v~I~~n~i~g~~d~GIyv~~---------s~~~~v~nN~~~~n~~GI~i~~ 159 (314)
T TIGR03805 107 AYGIYP-VESTNVLVEDSYVRGASDAGIYVGQ---------SQNIVVRNNVAEENVAGIEIEN 159 (314)
T ss_pred cceEEE-eccCCEEEECCEEECCCcccEEECC---------CCCeEEECCEEccCcceEEEEe
Confidence 688988 4689999999999764 3787744 2688999999999999999863
No 23
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=2.5e-05 Score=73.03 Aligned_cols=121 Identities=19% Similarity=0.231 Sum_probs=92.4
Q ss_pred EEEEeccCeEEecce---EEECcCCccccCCCCCCCcccEEEEEEEEeCCC-CCCCCceeee-cCcccEEEEeeEEec--
Q 042447 124 LDFSKLNGVLFQGSG---VIDGSGSKWWASSCKKNKSESVRVYQVLVSAPE-DSPNTDGIHI-TESTNVVLQDCKIGT-- 196 (355)
Q Consensus 124 i~~~~~~ni~I~G~G---~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~-~~~n~DGi~~-~~s~nv~I~n~~i~~-- 196 (355)
+++....|.+|.|.| ++-|-|..-|+. +||.|+|++|.... ..++-|+|.+ ..++|++|++|+|..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a-------~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s 167 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDA-------GNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGS 167 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeC-------CcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccc
Confidence 556667889998855 777777776654 89999999997543 2344589999 789999999999964
Q ss_pred -------CCceEEeecCCccEEEEeeEEcC-CceEEeccCCcccccceEEEEEEecceecCCc
Q 042447 197 -------GDDCISIVNGSSAIKMKRIFCGP-GHGISIGSLGKDNSMGIVTKVVLDTAYLRETA 251 (355)
Q Consensus 197 -------gDD~I~ik~g~~ni~i~n~~~~~-~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~ 251 (355)
+|..+.||.++..|+|+++++.. .-++-+|+.-.....+.-.+|++.+|+|+++.
T Consensus 168 ~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 168 YNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred ccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 57778899999999999999964 44777777533222344578999999999874
No 24
>smart00656 Amb_all Amb_all domain.
Probab=98.30 E-value=2.7e-05 Score=69.54 Aligned_cols=114 Identities=18% Similarity=0.286 Sum_probs=83.7
Q ss_pred ccEEEEEEEEeCCCC--CCCCceeeecCcccEEEEeeEEecC----------CceEEeecCCccEEEEeeEEcC-CceEE
Q 042447 158 ESVRVYQVLVSAPED--SPNTDGIHITESTNVVLQDCKIGTG----------DDCISIVNGSSAIKMKRIFCGP-GHGIS 224 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~g----------DD~I~ik~g~~ni~i~n~~~~~-~~Gi~ 224 (355)
+||.|++++|+.+.. ..+.|+|.+..+++|+|++|+|..+ |..+.++.++.++++++|.|.. ..+.-
T Consensus 40 ~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~l 119 (190)
T smart00656 40 SNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVML 119 (190)
T ss_pred ceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEE
Confidence 799999999997543 2467999999999999999999775 6667888899999999999964 34777
Q ss_pred eccCCcccccceEEEEEEecceecCCc-eeEEEEEeccCCeEEeeEEEEeEE
Q 042447 225 IGSLGKDNSMGIVTKVVLDTAYLRETA-NGLRIKTWQTSAVKISQIMYRNIS 275 (355)
Q Consensus 225 iGS~g~~~~~~~v~nV~i~n~~~~~~~-~gi~Ik~~~~~~~~i~nItf~NI~ 275 (355)
+|+.-... .....+|++.++.+.++. +..++. ...+.+-|-.|.|..
T Consensus 120 iG~~d~~~-~~~~~~vT~h~N~~~~~~~R~P~~r---~g~~hv~NN~~~n~~ 167 (190)
T smart00656 120 LGHSDSDT-DDGKMRVTIAHNYFGNLRQRAPRVR---FGYVHVYNNYYTGWT 167 (190)
T ss_pred EccCCCcc-ccccceEEEECcEEcCcccCCCccc---CCEEEEEeeEEeCcc
Confidence 87742221 122468999999998753 233443 124566776777764
No 25
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.96 E-value=0.00017 Score=66.67 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=60.4
Q ss_pred ccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEec-CCceEEee-----cCCccEEEEeeEEcC-CceEEeccCCc
Q 042447 158 ESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGT-GDDCISIV-----NGSSAIKMKRIFCGP-GHGISIGSLGK 230 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gDD~I~ik-----~g~~ni~i~n~~~~~-~~Gi~iGS~g~ 230 (355)
.+.+|++++|+++.. ...-|+.+.++ +.+|+||+|.. +.++|.+. +...++.|++..+.. ..||++-..
T Consensus 97 ~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~-- 172 (246)
T PF07602_consen 97 NNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDN-- 172 (246)
T ss_pred CCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEcc--
Confidence 677899999999732 24458999876 99999999964 67788763 234556666666653 457777332
Q ss_pred ccccceEEEEEEecceecCCceeEEEE
Q 042447 231 DNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 231 ~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
... +. ..++|+.+++...|+.+.
T Consensus 173 --~~~-~~-n~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 173 --AAP-VE-NKIENNIIENNNIGIVAI 195 (246)
T ss_pred --cCC-cc-ceeeccEEEeCCcCeEee
Confidence 111 22 255777777666677654
No 26
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.93 E-value=3.1e-05 Score=69.73 Aligned_cols=113 Identities=22% Similarity=0.322 Sum_probs=73.5
Q ss_pred ccEEEEEEEEeCC-----------CCCCCCceeeecCcccEEEEeeEEec---------CCceEEeecCCccEEEEeeEE
Q 042447 158 ESVRVYQVLVSAP-----------EDSPNTDGIHITESTNVVLQDCKIGT---------GDDCISIVNGSSAIKMKRIFC 217 (355)
Q Consensus 158 ~nv~i~~v~I~~~-----------~~~~n~DGi~~~~s~nv~I~n~~i~~---------gDD~I~ik~g~~ni~i~n~~~ 217 (355)
+||-|+|++|+.. ......|+|.+..+++|+|++|+|.. .|..+.++.++.+|+|++|.+
T Consensus 46 ~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f 125 (200)
T PF00544_consen 46 SNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIF 125 (200)
T ss_dssp EEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EE
T ss_pred CeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhc
Confidence 7888888888862 22356799999999999999999954 577789999999999999999
Q ss_pred cCC-ceEEeccCCcccccceEEEEEEecceecCCce-eEEEEEeccCCeEEeeEEEEeE
Q 042447 218 GPG-HGISIGSLGKDNSMGIVTKVVLDTAYLRETAN-GLRIKTWQTSAVKISQIMYRNI 274 (355)
Q Consensus 218 ~~~-~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~-gi~Ik~~~~~~~~i~nItf~NI 274 (355)
... .+.-+|+.-....... .+|++..+.+.++.. .-+++ .....+-|-.|.+.
T Consensus 126 ~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~~~R~P~~r---~G~~Hv~NN~~~~~ 180 (200)
T PF00544_consen 126 DNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANTNSRNPRVR---FGYVHVYNNYYYNW 180 (200)
T ss_dssp EEEEETCEESSCTTCGGGTT-EEEEEES-EEEEEEE-TTEEC---SCEEEEES-EEEEE
T ss_pred cccccccccCCCCCccccCC-ceEEEEeEEECchhhCCCccc---ccEEEEEEeeeECC
Confidence 643 3556776422222333 899999999876532 11332 23345666666555
No 27
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.75 E-value=0.00022 Score=60.23 Aligned_cols=128 Identities=16% Similarity=0.355 Sum_probs=66.9
Q ss_pred ccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccce
Q 042447 158 ESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGI 236 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~ 236 (355)
.+++|++++|... ..+||.+..+..++|+||+|..+..++.+.. ..++.+++|++.... |+.+..
T Consensus 9 ~~~~i~~~~i~~~----~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~-~~~~~i~~~~~~~~~~~i~~~~--------- 74 (158)
T PF13229_consen 9 SNVTIRNCTISNN----GGDGIHVSGSSNITIENCTISNGGYGIYVSG-GSNVTISNNTISDNGSGIYVSG--------- 74 (158)
T ss_dssp EC-EEESEEEESS----SSECEEE-SSCESEEES-EEESSTTSEEEEC-CES-EEES-EEES-SEEEECCS---------
T ss_pred cCeEEeeeEEEeC----CCeEEEEEcCCCeEEECeEEECCCcEEEEec-CCCeEEECeEEEEccceEEEEe---------
Confidence 5577777777653 3467777777777777887777777777743 367777777775433 444421
Q ss_pred EEEEEEecceecCCce-eEEEEEeccCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEeCC
Q 042447 237 VTKVVLDTAYLRETAN-GLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 237 v~nV~i~n~~~~~~~~-gi~Ik~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~ 308 (355)
..++++++|.+.++.. |+.+.. .-+++++++.+.......++.+.... -.+++|++..+....
T Consensus 75 ~~~~~i~~~~i~~~~~~gi~~~~------~~~~~~i~~n~~~~~~~~gi~~~~~~---~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 75 SSNITIENNRIENNGDYGIYISN------SSSNVTIENNTIHNNGGSGIYLEGGS---SPNVTIENNTISNNG 138 (158)
T ss_dssp -CS-EEES-EEECSSS-SCE-TC------EECS-EEES-EEECCTTSSCEEEECC-----S-EEECEEEECES
T ss_pred cCCceecCcEEEcCCCccEEEec------cCCCEEEEeEEEEeCcceeEEEECCC---CCeEEEEEEEEEeCc
Confidence 2445677777766654 666652 23334444444444334555554432 125666666666544
No 28
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.71 E-value=0.00028 Score=59.49 Aligned_cols=113 Identities=23% Similarity=0.451 Sum_probs=73.8
Q ss_pred ceeeecCcccEEEEeeEEec-CCceEEeecCCccEEEEeeEEcC-CceEEeccCCcccccceEEEEEEecceecCCceeE
Q 042447 177 DGIHITESTNVVLQDCKIGT-GDDCISIVNGSSAIKMKRIFCGP-GHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGL 254 (355)
Q Consensus 177 DGi~~~~s~nv~I~n~~i~~-gDD~I~ik~g~~ni~i~n~~~~~-~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi 254 (355)
+||.+..+.+++|++|+|.. +.++|.+. ++..++++||++.. ..|+.+... .++.+++|++.+...|+
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~~~~gi~~~-~~~~~~i~n~~i~~~~~gi~~~~~---------~~~~i~~~~~~~~~~~i 70 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNNGGDGIHVS-GSSNITIENCTISNGGYGIYVSGG---------SNVTISNNTISDNGSGI 70 (158)
T ss_dssp -CEEETTCEC-EEESEEEESSSSECEEE--SSCESEEES-EEESSTTSEEEECC---------ES-EEES-EEES-SEEE
T ss_pred CEEEEECCcCeEEeeeEEEeCCCeEEEEE-cCCCeEEECeEEECCCcEEEEecC---------CCeEEECeEEEEccceE
Confidence 58999999999999999976 78999994 45568999999976 457777332 67889999998887666
Q ss_pred EEEEeccCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEeCCCc
Q 042447 255 RIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGT 310 (355)
Q Consensus 255 ~Ik~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~g~ 310 (355)
.+. ......+++..|.+. ...++.+.. +.++++|++-.+....+.
T Consensus 71 ~~~--~~~~~~i~~~~i~~~-----~~~gi~~~~----~~~~~~i~~n~~~~~~~~ 115 (158)
T PF13229_consen 71 YVS--GSSNITIENNRIENN-----GDYGIYISN----SSSNVTIENNTIHNNGGS 115 (158)
T ss_dssp ECC--S-CS-EEES-EEECS-----SS-SCE-TC----EECS-EEES-EEECCTTS
T ss_pred EEE--ecCCceecCcEEEcC-----CCccEEEec----cCCCEEEEeEEEEeCcce
Confidence 554 345556666666655 334666643 456899999999987643
No 29
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.54 E-value=0.0019 Score=63.93 Aligned_cols=205 Identities=15% Similarity=0.241 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEcCCeEEEEeeeeeecc--ccccEEEEEc--eEEeecCCCCCCCccCcceEEEEEeccC
Q 042447 56 DTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATRFKGP--CADKLVIQID--GTIVAPAEPDNWDPKLARIWLDFSKLNG 131 (355)
Q Consensus 56 dT~Aiq~Ai~~a~~~gg~~V~iP~G~tY~i~~~~l~~p--~~~~~~l~~~--g~l~~~~~~~~~~~~~~~~~i~~~~~~n 131 (355)
+.++||+|+++|. .|.+|+++.|+ |.-..+.++.. ...+++|..+ |....+. ...+.+. .+.
T Consensus 3 s~~~lq~Ai~~a~--pGD~I~L~~Gt-y~~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G----------~s~l~i~-G~y 68 (425)
T PF14592_consen 3 SVAELQSAIDNAK--PGDTIVLADGT-YKDVEIVFKGSGTAAKPITLRAENPGKVVITG----------ESNLRIS-GSY 68 (425)
T ss_dssp SHHHHHHHHHH----TT-EEEE-SEE-EET-EEEE-S--BTTB-EEEEESSTTSEEEEE----------S-EEEE--SSS
T ss_pred CHHHHHHHHHhCC--CCCEEEECCce-eecceEEEEecccCCCCEEEEecCCCeEEEec----------ceeEEEE-eee
Confidence 4678999999644 48899999995 87334444421 1123454443 1111000 0112222 244
Q ss_pred eEEecceEEECcCCc-cccCCCCCC---CcccEEEEEEEEeCCCCCCCCce--eee----cCcccEEEEeeEEec---CC
Q 042447 132 VLFQGSGVIDGSGSK-WWASSCKKN---KSESVRVYQVLVSAPEDSPNTDG--IHI----TESTNVVLQDCKIGT---GD 198 (355)
Q Consensus 132 i~I~G~G~IdG~G~~-~~~~~~~~~---~~~nv~i~~v~I~~~~~~~n~DG--i~~----~~s~nv~I~n~~i~~---gD 198 (355)
++++|.-.-+|.... =|..+.... .+.+.++.++.|+.-. .+..+. ..+ ...++-+|++|.|.. ..
T Consensus 69 l~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn-~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G 147 (425)
T PF14592_consen 69 LVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFN-NPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRG 147 (425)
T ss_dssp EEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES---SS-S-SEEE---TT-----S-EEES-EEE---SSS
T ss_pred EEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccC-CcccccCceEEEEEEeeccCceEEccEeeccccCC
Confidence 555542221222110 000000000 2367788888887521 122222 223 237899999999954 23
Q ss_pred ceEEee---cC----CccEEEEeeEEcC-----C---ceEEeccCCcccccceEEEEEEecceecCCceeEEEEEeccCC
Q 042447 199 DCISIV---NG----SSAIKMKRIFCGP-----G---HGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSA 263 (355)
Q Consensus 199 D~I~ik---~g----~~ni~i~n~~~~~-----~---~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~~~ 263 (355)
--+.+. .+ ....+|++++|.+ + ..|.||...... .-.+.+|+++.|++|..=..|-+...+.
T Consensus 148 ~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~---~~s~t~Ve~NlFe~cdGE~EIISvKS~~ 224 (425)
T PF14592_consen 148 PTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSM---SDSNTTVENNLFERCDGEVEIISVKSSD 224 (425)
T ss_dssp -SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B--------EEES-EEEEE-SSSEEEEEESBT
T ss_pred cEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccccc---cccceeeecchhhhcCCceeEEEeecCC
Confidence 334443 11 2356799999962 2 249998754332 2256788888888776433333333566
Q ss_pred eEEeeEEEEeEEEee
Q 042447 264 VKISQIMYRNISGTT 278 (355)
Q Consensus 264 ~~i~nItf~NI~g~~ 278 (355)
-.+++=||++..|+-
T Consensus 225 N~ir~Ntf~es~G~l 239 (425)
T PF14592_consen 225 NTIRNNTFRESQGSL 239 (425)
T ss_dssp -EEES-EEES-SSEE
T ss_pred ceEeccEEEeccceE
Confidence 688888999887653
No 30
>PLN02773 pectinesterase
Probab=97.51 E-value=0.022 Score=54.77 Aligned_cols=135 Identities=10% Similarity=0.153 Sum_probs=80.3
Q ss_pred ccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
+++..+|++|.|.... ..+-.+.+. ++.+.+.||.|...-|-+.... ..-.++||++.+.-=+-+|+
T Consensus 102 ~~f~a~nlT~~Nt~~~~~gQAvAl~v~-gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~-------- 170 (317)
T PLN02773 102 EDFIAENITFENSAPEGSGQAVAIRVT-ADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN-------- 170 (317)
T ss_pred CCeEEEeeEEEeCCCCCCCcEEEEEec-CccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec--------
Confidence 7888999999875321 123335554 6899999999988778777643 46788999987655555655
Q ss_pred eEEEEEEecceecCCceeEEEEEecc-CCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 236 IVTKVVLDTAYLRETANGLRIKTWQT-SAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~~~gi~Ik~~~~-~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
-...|++|++.....| .|-.... ....-....|.|++.+......-...+.+=.|-..+.|.|..|..
T Consensus 171 --g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~~~~~~~yLGRpW~~~a~vVf~~t~l~~ 239 (317)
T PLN02773 171 --STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGNGGSGYMYLGRPWGPFGRVVFAYTYMDA 239 (317)
T ss_pred --cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecCCCCcceeecCCCCCCceEEEEecccCC
Confidence 2458888888654444 2321111 111123467777776653221112235444455566666665553
No 31
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.42 E-value=0.0012 Score=60.85 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=10.8
Q ss_pred cCcccEEEEeeEEecCC
Q 042447 182 TESTNVVLQDCKIGTGD 198 (355)
Q Consensus 182 ~~s~nv~I~n~~i~~gD 198 (355)
+.++||.|+|+++.+.|
T Consensus 153 q~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 153 QYCKNVEIHNSKLDSKD 169 (277)
T ss_pred eceeeEEEEccEEeccc
Confidence 33677777777776554
No 32
>PLN02480 Probable pectinesterase
Probab=97.41 E-value=0.043 Score=53.37 Aligned_cols=132 Identities=7% Similarity=0.089 Sum_probs=74.7
Q ss_pred ccEEEEEEEEeCCCC-----CCCCceeee-cCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcc
Q 042447 158 ESVRVYQVLVSAPED-----SPNTDGIHI-TESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKD 231 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~-----~~n~DGi~~-~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~ 231 (355)
.+++++|++|.+... .....++-+ ..++.+.+.||.|...-|-+... ...-.++||++.+.-=+=+|.
T Consensus 132 ~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~--~gR~yf~~C~IeG~VDFIFG~---- 205 (343)
T PLN02480 132 PHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY--KGRHYYHSCYIQGSIDFIFGR---- 205 (343)
T ss_pred CCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeC--CCCEEEEeCEEEeeeeEEccc----
Confidence 678888999887521 112344554 23799999999998777766543 346778888887654455554
Q ss_pred cccceEEEEEEecceecCCc------eeEEEEEeccCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEE
Q 042447 232 NSMGIVTKVVLDTAYLRETA------NGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLE 305 (355)
Q Consensus 232 ~~~~~v~nV~i~n~~~~~~~------~gi~Ik~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~ 305 (355)
-...|++|++.... .|. |-.+......-....|.|++.+.. ..++| +.+=.+-..+.|-|..|.
T Consensus 206 ------g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r~~~~~~GfvF~~C~i~g~--g~~yL-GRPW~~ya~vVf~~t~l~ 275 (343)
T PLN02480 206 ------GRSIFHNCEIFVIADRRVKIYGS-ITAHNRESEDNSGFVFIKGKVYGI--GEVYL-GRAKGAYSRVIFAKTYLS 275 (343)
T ss_pred ------eeEEEEccEEEEecCCCCCCceE-EEcCCCCCCCCCEEEEECCEEccc--Cceee-ecCCCCcceEEEEecccC
Confidence 23578888876431 122 322211111223456777765542 12333 444444555666655553
No 33
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.34 E-value=0.0062 Score=55.86 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=85.3
Q ss_pred EEEEeccCeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEecCCceEEe
Q 042447 124 LDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISI 203 (355)
Q Consensus 124 i~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~i 203 (355)
+++.+..++.|++.-+.... ...+.. .+.+++|++.+|... ..||.+..+.++.|+++.+.....+|.+
T Consensus 16 i~l~~~~~~~i~~n~i~~~~-~gi~~~-----~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l 84 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISNSR-DGIYVE-----NSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYL 84 (236)
T ss_pred EEEEeCCCCEEEcCEEEeCC-CEEEEE-----EcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEE
Confidence 34555667777664333222 111111 127889999988763 4699999999999999999887799999
Q ss_pred ecCCccEEEEeeEEcC-CceEEeccCCcccccceEEEEEEecceecCCceeEEEEEeccCCeEEeeEEEE
Q 042447 204 VNGSSAIKMKRIFCGP-GHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYR 272 (355)
Q Consensus 204 k~g~~ni~i~n~~~~~-~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~~~~~i~nItf~ 272 (355)
...+.+ +|+++++.. ..||.+.. ..+.+|+++++.+...||.+... ....|++=+|.
T Consensus 85 ~~s~~~-~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s--~~n~I~~N~i~ 142 (236)
T PF05048_consen 85 MGSSNN-TISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS--SNNTITGNTIS 142 (236)
T ss_pred EcCCCc-EEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC--CCCEEECeEEe
Confidence 665544 888888864 45777633 24468889998888899998742 33344443433
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.30 E-value=0.014 Score=53.57 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=85.5
Q ss_pred EEEEeccCeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEecCCceEEe
Q 042447 124 LDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGTGDDCISI 203 (355)
Q Consensus 124 i~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~i 203 (355)
+.+....+++|++. +|.+......-. .+.+++|++.++... ..||.+..+.+.+|+++.|.....+|.+
T Consensus 38 i~~~~s~~~~I~~n-~i~~~~~GI~~~-----~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l 106 (236)
T PF05048_consen 38 IYVENSDNNTISNN-TISNNRYGIHLM-----GSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYL 106 (236)
T ss_pred EEEEEcCCeEEEee-EEECCCeEEEEE-----ccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEE
Confidence 35566778888874 444442211111 126688888888763 2799999998889999999877679998
Q ss_pred ecCCccEEEEeeEEc-CCceEEeccCCcccccceEEEEEEecceecCC-ceeEEEEEeccCCeEEeeEEEEeE
Q 042447 204 VNGSSAIKMKRIFCG-PGHGISIGSLGKDNSMGIVTKVVLDTAYLRET-ANGLRIKTWQTSAVKISQIMYRNI 274 (355)
Q Consensus 204 k~g~~ni~i~n~~~~-~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~-~~gi~Ik~~~~~~~~i~nItf~NI 274 (355)
.. +.+.+|+++++. ...||.+... .+.+|+++++.+. ..|+++... .....|.+=.|.|.
T Consensus 107 ~~-s~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~~~~-s~~n~I~~N~f~N~ 168 (236)
T PF05048_consen 107 YG-SSNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYFLSG-SSGNTIYNNNFNNS 168 (236)
T ss_pred ee-CCceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEEecc-CCCCEEECCCccCE
Confidence 54 566778888775 4568888432 4567888888887 889984322 23344555455333
No 35
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.20 E-value=0.023 Score=52.62 Aligned_cols=120 Identities=18% Similarity=0.308 Sum_probs=63.0
Q ss_pred CcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCc-----------
Q 042447 183 ESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETA----------- 251 (355)
Q Consensus 183 ~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~----------- 251 (355)
.|++|.++|+.+ .| |-+.+ .+.||.++|....+.. ...+++||.|+|+.+..-+
T Consensus 116 ~c~~i~l~nv~~-~g-dYf~m--~s~ni~id~l~~~GnY-----------~Fq~~kNvei~ns~l~sKDAFWn~eNVtVy 180 (277)
T PF12541_consen 116 NCRGIKLKNVQA-NG-DYFFM--NSENIYIDNLVLDGNY-----------SFQYCKNVEIHNSKLDSKDAFWNCENVTVY 180 (277)
T ss_pred EeCCeEEEeEEE-ec-eEeee--eccceEEeceEEeCCE-----------EeeceeeEEEEccEEecccccccCCceEEE
Confidence 467777777777 22 33333 3466666666554322 1234566666666653211
Q ss_pred ----eeEEEEEeccCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEeCCCcceeeeeeeE----Eeec
Q 042447 252 ----NGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKDGTVETYCNSAQ----GIGY 323 (355)
Q Consensus 252 ----~gi~Ik~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~g~~~~~c~n~~----g~~~ 323 (355)
.|-++ .| .-+|++|.|++.... +| .| .|.+++|+|.++....=..+. +++. |.-.
T Consensus 181 DS~i~GEYL-gW-----~SkNltliNC~I~g~--Qp---LC----Y~~~L~l~nC~~~~tdlaFEy--S~v~A~I~~~I~ 243 (277)
T PF12541_consen 181 DSVINGEYL-GW-----NSKNLTLINCTIEGT--QP---LC----YCDNLVLENCTMIDTDLAFEY--SNVDADIKGPID 243 (277)
T ss_pred cceEeeeEE-EE-----EcCCeEEEEeEEecc--Cc---cE----eecceEEeCcEeecceeeeee--ccccEEEEccee
Confidence 11111 12 456888888877654 22 23 467899999988844433333 3333 3344
Q ss_pred eeccCCCCccC
Q 042447 324 GIVHPSADCLT 334 (355)
Q Consensus 324 ~~~~p~~~c~~ 334 (355)
.|-.|.-....
T Consensus 244 SVKNP~SG~I~ 254 (277)
T PF12541_consen 244 SVKNPISGKIR 254 (277)
T ss_pred eecCCCCCEEE
Confidence 44445443433
No 36
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.16 E-value=0.0005 Score=49.00 Aligned_cols=39 Identities=38% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCCCCCcchHHHHHHHHHHhhcCCCcEEEEcCCeEEEEeeee
Q 042447 48 AAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVSATR 89 (355)
Q Consensus 48 A~gDG~tDdT~Aiq~Ai~~a~~~gg~~V~iP~G~tY~i~~~~ 89 (355)
|+|||++|||+||.+|+++ .. .+.++=-.|-||.++++.
T Consensus 1 A~GDGvtdDt~A~~a~l~a-~~--~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEA-SP--VGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHH-S---TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhc-cC--CCeEEecCCceEEEeeCc
Confidence 7899999999999999985 32 344555578899998753
No 37
>PLN02682 pectinesterase family protein
Probab=97.04 E-value=0.12 Score=50.64 Aligned_cols=132 Identities=11% Similarity=0.114 Sum_probs=77.8
Q ss_pred ccEEEEEEEEeCCCC-------CCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCc
Q 042447 158 ESVRVYQVLVSAPED-------SPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGK 230 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~-------~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~ 230 (355)
.++..+|++|.|... ...+-.+.+. ++...+.||.|...-|-+... ...-.++||++.+.-=+-+|.
T Consensus 163 ~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~-gDr~~fy~C~f~G~QDTLy~~--~gRqyf~~C~IeG~VDFIFG~--- 236 (369)
T PLN02682 163 PYFIAKNITFKNTAPVPPPGALGKQAVALRIS-ADTAAFYGCKFLGAQDTLYDH--LGRHYFKDCYIEGSVDFIFGN--- 236 (369)
T ss_pred CCeEEEeeEEEcccccCCCCCCcccEEEEEec-CCcEEEEcceEeccccceEEC--CCCEEEEeeEEcccccEEecC---
Confidence 678888888887531 1122334444 699999999998877766653 346788999997765555654
Q ss_pred ccccceEEEEEEecceecCCc--eeEEEEEec-cCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 231 DNSMGIVTKVVLDTAYLRETA--NGLRIKTWQ-TSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 231 ~~~~~~v~nV~i~n~~~~~~~--~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
-...|++|++.... .| .|-... .....-....|.|++.+.. ..+.| +.+=.+-..+.|-|-.|..
T Consensus 237 -------g~a~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg~--g~~yL-GRpW~~yarvVf~~t~m~~ 304 (369)
T PLN02682 237 -------GLSLYEGCHLHAIARNFG-ALTAQKRQSVLEDTGFSFVNCKVTGS--GALYL-GRAWGTFSRVVFAYTYMDN 304 (369)
T ss_pred -------ceEEEEccEEEEecCCCe-EEecCCCCCCCCCceEEEEeeEecCC--CceEe-ecCCCCcceEEEEeccCCC
Confidence 24578888876422 23 222111 1111234567777776543 22333 5444555566666666554
No 38
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=97.04 E-value=0.073 Score=53.98 Aligned_cols=226 Identities=12% Similarity=0.151 Sum_probs=105.2
Q ss_pred CcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCC------CCCCcc---------CcceEE--EEEeccCeEE
Q 042447 72 KSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEP------DNWDPK---------LARIWL--DFSKLNGVLF 134 (355)
Q Consensus 72 g~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~------~~~~~~---------~~~~~i--~~~~~~ni~I 134 (355)
...|||-||. |.-+++.+.. -..++.+...|+|-..... ..|... ..+.|- ...+..++.+
T Consensus 256 ~~~VYlApGA-yVkGAf~~~~-~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~ 333 (582)
T PF03718_consen 256 TKWVYLAPGA-YVKGAFEYTD-TQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTC 333 (582)
T ss_dssp --EEEE-TTE-EEES-EEE----SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEE
T ss_pred ccEEEEcCCc-EEEEEEEEcc-CCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEE
Confidence 5799999996 9888876652 2468888888998865532 122200 001111 1122234444
Q ss_pred ecce---------EEECcCC--------------ccccCCCCCCCcccEEEEEEEEeCCCCCCCCceeeecCcccEEEEe
Q 042447 135 QGSG---------VIDGSGS--------------KWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQD 191 (355)
Q Consensus 135 ~G~G---------~IdG~G~--------------~~~~~~~~~~~~~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n 191 (355)
.|-- .+.|+-. .||-......-.++-+|+|+.+.+ |-|+|.+.. .++.|+|
T Consensus 334 ~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~-----nDD~iKlYh-S~v~v~~ 407 (582)
T PF03718_consen 334 EGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV-----NDDAIKLYH-SNVSVSN 407 (582)
T ss_dssp ES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE-----SS-SEE--S-TTEEEEE
T ss_pred EeeEecCCCcceEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe-----cCchhheee-cCcceee
Confidence 4411 1111110 121110001112778889999876 448898875 8999999
Q ss_pred eEEecCC--ceEEeec---CCccEEEEeeEEc-C---------CceEEeccCCcc---------cccceEEEEEEeccee
Q 042447 192 CKIGTGD--DCISIVN---GSSAIKMKRIFCG-P---------GHGISIGSLGKD---------NSMGIVTKVVLDTAYL 247 (355)
Q Consensus 192 ~~i~~gD--D~I~ik~---g~~ni~i~n~~~~-~---------~~Gi~iGS~g~~---------~~~~~v~nV~i~n~~~ 247 (355)
|.+...+ -.|-+.- ..+++.++|+.+- . ..+|- ++.-.+ .....+++++|+|.++
T Consensus 408 ~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~-~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~ 486 (582)
T PF03718_consen 408 TVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAIL-GSSPFYDDMASTKTADPSTTIRNMTFSNVRC 486 (582)
T ss_dssp EEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECE-EE--BTTS-SSS--BEEEEEEEEEEEEEEEE
T ss_pred eEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeE-ecccccccccCCCCCCcccceeeEEEEeEEE
Confidence 9997533 2333311 1457888888651 1 12332 221111 0134568999999999
Q ss_pred cCCc-eeEEEEEecc-CCeEEeeEEEEeEEEeecCcccEEEEc---C---CCCceeCEEEEeEEEEe
Q 042447 248 RETA-NGLRIKTWQT-SAVKISQIMYRNISGTTKSSKAMKFAC---S---DTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 248 ~~~~-~gi~Ik~~~~-~~~~i~nItf~NI~g~~~~~~~i~i~~---~---~~~~~~nI~~~nV~i~~ 306 (355)
++.. ..+||..-+. ....|+|+.|....+......-..+.. . ......+|.|+|.+|..
T Consensus 487 EG~~~~l~ri~plqn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 487 EGMCPCLFRIYPLQNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGG 553 (582)
T ss_dssp ECCE-ECEEE--SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETT
T ss_pred ecccceeEEEeecCCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECC
Confidence 9864 4578874321 123455555554433221111122211 1 12346788899888754
No 39
>PLN02176 putative pectinesterase
Probab=97.03 E-value=0.17 Score=49.24 Aligned_cols=147 Identities=10% Similarity=0.075 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhcCC--CcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCCCCCCccCcceEEEEEeccCeEE
Q 042447 57 TQAFLNAWNTACSTP--KSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLF 134 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~g--g~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~ni~I 134 (355)
=.-||+||+++-... .-+|+|.+|+ |.= .+.+.. .+.+++|..+|.- ...|.+.... .-
T Consensus 51 f~TIq~AIdavP~~~~~~~~I~Ik~Gv-Y~E-kV~Ip~-~k~~vtl~G~g~~--------------~TiIt~~~~~--~t 111 (340)
T PLN02176 51 FKTVQSAIDSIPLQNQNWIRILIQNGI-YRE-KVTIPK-EKGYIYMQGKGIE--------------KTIIAYGDHQ--AT 111 (340)
T ss_pred ccCHHHHHhhchhcCCceEEEEECCcE-EEE-EEEECC-CCccEEEEEcCCC--------------ceEEEEeCCc--cc
Confidence 556999999643322 2378999996 874 344421 2457888776520 0111111000 00
Q ss_pred ecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC--------CCCceeeecCcccEEEEeeEEecCCceEEeecC
Q 042447 135 QGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS--------PNTDGIHITESTNVVLQDCKIGTGDDCISIVNG 206 (355)
Q Consensus 135 ~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~--------~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g 206 (355)
.+..++.-. ..++..+|++|.|.... ..+-.+.+. ++...+.||.|...-|-+...
T Consensus 112 ~~saT~~v~-------------a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~-gDr~~f~~C~f~G~QDTLy~~-- 175 (340)
T PLN02176 112 DTSATFTSY-------------ASNIIITGITFKNTYNIASNSSRPTKPAVAARML-GDKYAIIDSSFDGFQDTLFDG-- 175 (340)
T ss_pred ccceEEEEE-------------CCCEEEEeeEEEeCCCccCCCCCCccceEEEEec-CccEEEEccEEecccceeEeC--
Confidence 111111111 16778888888875321 112234444 689999999998777766653
Q ss_pred CccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceec
Q 042447 207 SSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLR 248 (355)
Q Consensus 207 ~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~ 248 (355)
...-.+++|++.+.-=+-+|. ....|+||++.
T Consensus 176 ~gRqyf~~CyIeG~VDFIFG~----------a~a~Fe~C~I~ 207 (340)
T PLN02176 176 KGRHYYKRCVISGGIDFIFGY----------AQSIFEGCTLK 207 (340)
T ss_pred CcCEEEEecEEEecccEEecC----------ceEEEeccEEE
Confidence 346788899887654455554 23578888875
No 40
>PLN02432 putative pectinesterase
Probab=96.92 E-value=0.18 Score=48.00 Aligned_cols=132 Identities=13% Similarity=0.110 Sum_probs=77.0
Q ss_pred ccEEEEEEEEeCCCC-CCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccce
Q 042447 158 ESVRVYQVLVSAPED-SPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGI 236 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~-~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~ 236 (355)
.++.++|++|.|... ...+-.+.+. ++.+.+.+|.|...-|-+.... ..-.++||++.+.-=+-+|.-
T Consensus 94 ~~f~a~nlt~~Nt~g~~~QAvAl~v~-gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~g-------- 162 (293)
T PLN02432 94 SDFVGRFLTIQNTFGSSGKAVALRVA-GDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGNA-------- 162 (293)
T ss_pred CCeEEEeeEEEeCCCCCCceEEEEEc-CCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecCc--------
Confidence 678888899887532 1122334443 6899999999988777776543 457889999976555556552
Q ss_pred EEEEEEecceecCC--ceeEEEEEec-cCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 237 VTKVVLDTAYLRET--ANGLRIKTWQ-TSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 237 v~nV~i~n~~~~~~--~~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
...|++|.+... ..| .|-.+. .....-....|.|++.+... .+. .+.+=.|-..+.|-|-.|..
T Consensus 163 --~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg~g--~~y-LGRpW~~~srvvf~~t~l~~ 229 (293)
T PLN02432 163 --ASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTGAG--TTY-LGRPWGPYSRVVFALSYMSS 229 (293)
T ss_pred --eEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEcccc--hhh-ccCCCCCccEEEEEecccCC
Confidence 357888887532 123 332221 11112235677777765421 222 24444555566666665543
No 41
>PLN02665 pectinesterase family protein
Probab=96.90 E-value=0.24 Score=48.60 Aligned_cols=134 Identities=10% Similarity=0.105 Sum_probs=77.5
Q ss_pred ccEEEEEEEEeCCCCC-------CCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCc
Q 042447 158 ESVRVYQVLVSAPEDS-------PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGK 230 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~-------~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~ 230 (355)
+++..+|++|.|.... ..+-.+.+. ++...+.||.|...-|-+... ...-.+++|++.+.-=+-+|.-
T Consensus 154 ~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~-gDka~f~~C~f~G~QDTL~~~--~gr~yf~~CyIeG~VDFIFG~g-- 228 (366)
T PLN02665 154 DYFMAANIIIKNSAPRPDGKRKGAQAVAMRIS-GDKAAFYNCRFIGFQDTLCDD--KGRHFFKDCYIEGTVDFIFGSG-- 228 (366)
T ss_pred CCeEEEeeEEEeCCCCcCCCCCCcceEEEEEc-CCcEEEEcceeccccceeEeC--CCCEEEEeeEEeeccceecccc--
Confidence 6788888888875311 123335554 689999999998877776643 3467889999876554555551
Q ss_pred ccccceEEEEEEecceecCCcee--EEEEEec-cCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 231 DNSMGIVTKVVLDTAYLRETANG--LRIKTWQ-TSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 231 ~~~~~~v~nV~i~n~~~~~~~~g--i~Ik~~~-~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
...|++|++.....+ -.|-... .....-....|.|++.+... ..+.| +.+=.+-..+.|.+-.|..
T Consensus 229 --------~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~-~~~yL-GRpW~~ysrvVf~~t~m~~ 297 (366)
T PLN02665 229 --------KSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG-TGAYL-GRAWMSRPRVVFAYTEMSS 297 (366)
T ss_pred --------ceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC-Cceee-cCCCCCcceEEEEccccCC
Confidence 347778887644332 1222111 11112234567777766532 12333 5444455566666665554
No 42
>PLN02671 pectinesterase
Probab=96.89 E-value=0.29 Score=47.89 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=73.9
Q ss_pred ccEEEEEEEEeCCCC----C--CCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcc
Q 042447 158 ESVRVYQVLVSAPED----S--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKD 231 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~----~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~ 231 (355)
.++..+|++|.|... . ..+-.+.+. ++.+.+.||.|...-|-+.... ..-.++||++.+.--+-+|.
T Consensus 154 ~~F~a~nitfeNt~~~~~g~~~~QAVALrv~-gDra~f~~c~f~G~QDTLy~~~--gR~yf~~CyIeG~VDFIFG~---- 226 (359)
T PLN02671 154 DYFCATGITFENTVVAEPGGQGMQAVALRIS-GDKAFFYKVRVLGAQDTLLDET--GSHYFYQCYIQGSVDFIFGN---- 226 (359)
T ss_pred CceEEEeeEEEcCCCCCCCCCCccEEEEEEc-CccEEEEcceEeccccccEeCC--CcEEEEecEEEEeccEEecc----
Confidence 567777777776521 1 123334554 6899999999987777666433 45788899987654455554
Q ss_pred cccceEEEEEEecceecCCc--eeEEEEEec-cCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 232 NSMGIVTKVVLDTAYLRETA--NGLRIKTWQ-TSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 232 ~~~~~v~nV~i~n~~~~~~~--~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
-...|++|.+.... .| .|-... .....-....|.|++.+.. ..+.| +.+=.+-..+.|-|-.|..
T Consensus 227 ------g~A~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg~--g~vyL-GRPW~~yarvVf~~t~m~~ 294 (359)
T PLN02671 227 ------AKSLYQDCVIQSTAKRSG-AIAAHHRDSPTEDTGFSFVNCVINGT--GKIYL-GRAWGNYSRTVYSNCFIAD 294 (359)
T ss_pred ------eeEEEeccEEEEecCCCe-EEEeeccCCCCCCccEEEEccEEccC--ccEEE-eCCCCCCceEEEEecccCC
Confidence 23578888876432 23 222111 1111224567777766542 22333 4444444556666555543
No 43
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.86 E-value=0.24 Score=50.90 Aligned_cols=204 Identities=10% Similarity=0.058 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhhcC--CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceE----EeecCCCCCCCccCcceEEEEEecc
Q 042447 57 TQAFLNAWNTACST--PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT----IVAPAEPDNWDPKLARIWLDFSKLN 130 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~--gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~----l~~~~~~~~~~~~~~~~~i~~~~~~ 130 (355)
=.-||+||+++-.. .--+|+|-+|. |.= .+.+.. .+.+++|..+|. |.+....
T Consensus 230 f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv-Y~E-~V~I~~-~k~~itl~G~g~~~TiIt~~~~~------------------ 288 (530)
T PLN02933 230 FTTINEAVSAAPNSSETRFIIYIKGGE-YFE-NVELPK-KKTMIMFIGDGIGKTVIKANRSR------------------ 288 (530)
T ss_pred ccCHHHHHHhchhcCCCcEEEEEcCce-EEE-EEEecC-CCceEEEEEcCCCCcEEEeCCcc------------------
Confidence 45699999964332 23479999996 873 344432 235677776652 1111000
Q ss_pred CeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCCC--CCceeeecCcccEEEEeeEEecCCceEEeecCCc
Q 042447 131 GVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSP--NTDGIHITESTNVVLQDCKIGTGDDCISIVNGSS 208 (355)
Q Consensus 131 ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~~--n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ 208 (355)
..|.++.. ...++ ....++..+|++|.|..... .+-.+.+. ++...+.+|.|...-|-+.... .
T Consensus 289 ---~dg~~T~~--SaT~~------v~a~~F~a~nitf~Ntag~~~~QAVAlrv~-~Dra~fy~C~f~G~QDTLy~~~--~ 354 (530)
T PLN02933 289 ---IDGWSTFQ--TATVG------VKGKGFIAKDISFVNYAGPAKHQAVALRSG-SDHSAFYRCEFDGYQDTLYVHS--A 354 (530)
T ss_pred ---CCCCcccc--ceEEE------EECCCEEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEEeEEEecccccccCC--C
Confidence 01100000 00000 01167788888888753222 22334443 6899999999987777666543 3
Q ss_pred cEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCc----eeEEEEEec-cCCeEEeeEEEEeEEEeecCc--
Q 042447 209 AIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETA----NGLRIKTWQ-TSAVKISQIMYRNISGTTKSS-- 281 (355)
Q Consensus 209 ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~----~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~-- 281 (355)
.-..++|++.+.-=+-||.. ...|+||.+.--. ..-.|-... .....-..+.|.|++.+....
T Consensus 355 Rqyy~~C~IeGtVDFIFG~a----------~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~~~~ 424 (530)
T PLN02933 355 KQFYRECDIYGTIDFIFGNA----------AVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLI 424 (530)
T ss_pred ceEEEeeEEecccceeccCc----------eEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCCccc
Confidence 56889999987655666652 3477888875321 011222111 111123467778877654321
Q ss_pred -----ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 282 -----KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 282 -----~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
..++| |.+=.+-..+.|-+-.|..
T Consensus 425 ~~~~~~~~yL-GRPW~~ysrvVf~~s~l~~ 453 (530)
T PLN02933 425 PVKENFKAYL-GRPWRKYSRTVIIKSFIDD 453 (530)
T ss_pred ccccccceEe-ccCCCCCceEEEEecccCC
Confidence 12333 5555556677777766654
No 44
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.82 E-value=0.038 Score=49.51 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=32.9
Q ss_pred EEEEEEEEeCCCCCC--CCceeeecCcccEEEEeeEEec-CCceEEee
Q 042447 160 VRVYQVLVSAPEDSP--NTDGIHITESTNVVLQDCKIGT-GDDCISIV 204 (355)
Q Consensus 160 v~i~~v~I~~~~~~~--n~DGi~~~~s~nv~I~n~~i~~-gDD~I~ik 204 (355)
+.+++++|+...... ...|+++..+++++|+||++.+ +.+++.+.
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~ 141 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN 141 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence 448888888765433 2478999999999999999965 56777764
No 45
>PLN02634 probable pectinesterase
Probab=96.82 E-value=0.28 Score=48.00 Aligned_cols=132 Identities=8% Similarity=0.054 Sum_probs=73.2
Q ss_pred ccEEEEEEEEeCCCC-------CCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCc
Q 042447 158 ESVRVYQVLVSAPED-------SPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGK 230 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~-------~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~ 230 (355)
.++..+|++|.|... ...+-.+.+. ++...+.+|.|...-|-+... ...-.++||++.+.-=+-+|.-
T Consensus 149 ~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~-gDra~f~~C~f~G~QDTL~~~--~gR~yf~~CyIeG~VDFIFG~g-- 223 (359)
T PLN02634 149 NYFTARNISFKNTAPAPMPGMQGWQAVAFRIS-GDKAFFFGCGFYGAQDTLCDD--AGRHYFKECYIEGSIDFIFGNG-- 223 (359)
T ss_pred CCeEEEeCeEEeCCccCCCCCCCCceEEEEec-CCcEEEEEeEEecccceeeeC--CCCEEEEeeEEcccccEEcCCc--
Confidence 567778888876421 1122234444 688999999998777766643 3467888999876544555541
Q ss_pred ccccceEEEEEEecceecCCceeEEEEEecc--CCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEE
Q 042447 231 DNSMGIVTKVVLDTAYLRETANGLRIKTWQT--SAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLE 305 (355)
Q Consensus 231 ~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~--~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~ 305 (355)
...|+||.+..........+.++ +...-....|.|++.+... .+.| +.+=.+-..+.|.+-.|.
T Consensus 224 --------~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~g--~~yL-GRPW~~yarvVf~~t~l~ 289 (359)
T PLN02634 224 --------RSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTG--PLYV-GRAMGQYSRIVYAYTYFD 289 (359)
T ss_pred --------eEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCCc--ceEe-cCCCCCcceEEEEecccC
Confidence 34678888764321111112221 1112245677777765431 2232 444444445555555444
No 46
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.80 E-value=0.36 Score=50.06 Aligned_cols=135 Identities=11% Similarity=0.098 Sum_probs=78.5
Q ss_pred ccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
+++..+|++|.|.... ..+-.+.+. ++.+.+.||.|...-|-+.... ..-..++|++.+.-=+-||.
T Consensus 330 ~~f~a~~it~~Ntag~~~~QAVAlrv~-~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtVDFIFG~-------- 398 (553)
T PLN02708 330 DGFMARDLTIQNTAGPDAHQAVAFRSD-SDLSVIENCEFLGNQDTLYAHS--LRQFYKSCRIQGNVDFIFGN-------- 398 (553)
T ss_pred CCeEEEeeEEEcCCCCCCCceEEEEec-CCcEEEEeeeeeeccccceeCC--CceEEEeeEEeecCCEEecC--------
Confidence 6778888888875422 233345554 6899999999988777776643 34578999997765566655
Q ss_pred eEEEEEEecceecCC------cee--EEEEEe-ccCCeEEeeEEEEeEEEeecCc-----------ccEEEEcCCCCcee
Q 042447 236 IVTKVVLDTAYLRET------ANG--LRIKTW-QTSAVKISQIMYRNISGTTKSS-----------KAMKFACSDTVPCS 295 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~------~~g--i~Ik~~-~~~~~~i~nItf~NI~g~~~~~-----------~~i~i~~~~~~~~~ 295 (355)
..++|+||.+.-. ..| -.|-.. ......-..+.|.|++.+.... ..++ .|.+=.+-.
T Consensus 399 --a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~~~~~y-LGRPW~~ys 475 (553)
T PLN02708 399 --SAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTEEYMKLYRSNPKVHKNF-LGRPWKEYS 475 (553)
T ss_pred --ceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecCCccccccccccccccee-eecCCCCcc
Confidence 2457888887621 111 122211 1121223467777777654321 0122 254444555
Q ss_pred CEEEEeEEEEe
Q 042447 296 DIVLSNVNLEK 306 (355)
Q Consensus 296 nI~~~nV~i~~ 306 (355)
.+.|-+-.|..
T Consensus 476 r~V~~~s~l~~ 486 (553)
T PLN02708 476 RTVFIGCNLEA 486 (553)
T ss_pred eEEEEecccCC
Confidence 56666655543
No 47
>PLN02916 pectinesterase family protein
Probab=96.71 E-value=0.39 Score=49.03 Aligned_cols=135 Identities=10% Similarity=0.041 Sum_probs=80.4
Q ss_pred ccEEEEEEEEeCCCCCC--CCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPEDSP--NTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~~--n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
.++..+|++|.|..... .+-.+.+. ++...+.+|.|...-|-+...+ ..-..++|++.+.-=+-+|.
T Consensus 277 ~~F~A~nitf~Ntag~~~~QAVALrv~-~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 345 (502)
T PLN02916 277 DGFWARDITFENTAGPHKHQAVALRVS-SDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGD-------- 345 (502)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEEc-CCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccC--------
Confidence 67778888888753222 23334454 6899999999988777777643 35678999997765565655
Q ss_pred eEEEEEEecceecCCc----eeEEEEEec-cCCeEEeeEEEEeEEEeecCc-------ccEEEEcCCCCceeCEEEEeEE
Q 042447 236 IVTKVVLDTAYLRETA----NGLRIKTWQ-TSAVKISQIMYRNISGTTKSS-------KAMKFACSDTVPCSDIVLSNVN 303 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~~----~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~-------~~i~i~~~~~~~~~nI~~~nV~ 303 (355)
....|+||.+.-.. ..-.|-... .....-..+.|.|++.+.... ..++ .|.+=.+-+.+.|-+-.
T Consensus 346 --a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~y-LGRPW~~ysrvVf~~t~ 422 (502)
T PLN02916 346 --AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASPEFEAVKGRFKSF-LGRPWKKYSRTVFLKTD 422 (502)
T ss_pred --ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceE-eecCCCCCceEEEEecc
Confidence 24578888875321 111232111 111233567788887665321 1223 35555566667777666
Q ss_pred EEe
Q 042447 304 LEK 306 (355)
Q Consensus 304 i~~ 306 (355)
|..
T Consensus 423 ~~~ 425 (502)
T PLN02916 423 LDG 425 (502)
T ss_pred cCC
Confidence 654
No 48
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.61 E-value=0.31 Score=50.40 Aligned_cols=205 Identities=12% Similarity=0.091 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHhhc----CCCcEEEEcCCeEEEEeeeeeeccccccEEEEEceE---Ee-ecCCCCCCCccCcceEEEEE
Q 042447 56 DTQAFLNAWNTACS----TPKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT---IV-APAEPDNWDPKLARIWLDFS 127 (355)
Q Consensus 56 dT~Aiq~Ai~~a~~----~gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~---l~-~~~~~~~~~~~~~~~~i~~~ 127 (355)
|=.-||+||+++-. .+.-+|+|-+|. |.=. +.+.. .+.+++|..+|. +. +.... . ..+-.+.
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~-Y~E~-V~i~~-~k~~i~l~G~g~~~TvIt~~~~~---~----~~~~T~~ 303 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGI-YQEN-INVRL-NNDDIMLVGDGMRSTIITGGRSV---K----GGYTTYN 303 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCCE-eEEE-EEecC-CCCcEEEEEcCCCCeEEEeCCcc---C----CCCcccc
Confidence 35569999997532 123579999996 8743 33321 246788887762 21 11100 0 0000000
Q ss_pred eccCeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeec
Q 042447 128 KLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVN 205 (355)
Q Consensus 128 ~~~ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~ 205 (355)
..-+.+.| .++..+|++|.|.... ..+-.+.+. ++...+.+|.|...-|-+...
T Consensus 304 -SaT~~v~~---------------------~~F~a~nitf~Ntag~~~~QAVAlrv~-~Dr~~f~~c~~~G~QDTLy~~- 359 (539)
T PLN02995 304 -SATAGIEG---------------------LHFIAKGITFRNTAGPAKGQAVALRSS-SDLSIFYKCSIEGYQDTLMVH- 359 (539)
T ss_pred -eEEEEEEC---------------------CCeEEEeeEEEeCCCCCCCceEEEEEc-CCceeEEcceEecccchhccC-
Confidence 00111222 5667788888765322 223334444 689999999998777766653
Q ss_pred CCccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCce----eEEEEEec-cCCeEEeeEEEEeEEEeecC
Q 042447 206 GSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETAN----GLRIKTWQ-TSAVKISQIMYRNISGTTKS 280 (355)
Q Consensus 206 g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~----gi~Ik~~~-~~~~~i~nItf~NI~g~~~~ 280 (355)
...-..++|++.+.-=+-+|. ....|+||.+..... .-.|-... .....-..+.|.|++.+...
T Consensus 360 -~~Rqyy~~C~I~GtVDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 360 -SQRQFYRECYIYGTVDFIFGN----------AAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAP 428 (539)
T ss_pred -CCceEEEeeEEeeccceEecc----------cceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCC
Confidence 345688999997655455654 234778887754210 11222110 11122356778888766532
Q ss_pred c-------ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 281 S-------KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 281 ~-------~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
. ..++ .|.+=.+-..+.|-+-.|..
T Consensus 429 ~~~~~~~~~~~y-LGRPW~~ysrvv~~~t~~~~ 460 (539)
T PLN02995 429 DLKPVVRTVKTY-MGRPWMKFSRTVVLQTYLDN 460 (539)
T ss_pred ccccccccccee-ccCCCCCCcceEEEeccccC
Confidence 1 0122 35555556667777766644
No 49
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.60 E-value=0.15 Score=51.07 Aligned_cols=96 Identities=13% Similarity=0.145 Sum_probs=64.7
Q ss_pred CCCCceeeecCcccEEEEeeEEecCC-ceEEeecCCccEEEEeeEEcC-Cc-eEEeccCCcccccceEEEEEEecceecC
Q 042447 173 SPNTDGIHITESTNVVLQDCKIGTGD-DCISIVNGSSAIKMKRIFCGP-GH-GISIGSLGKDNSMGIVTKVVLDTAYLRE 249 (355)
Q Consensus 173 ~~n~DGi~~~~s~nv~I~n~~i~~gD-D~I~ik~g~~ni~i~n~~~~~-~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~ 249 (355)
....+||+++.+.+++|++.+|+..+ |+|.+. .+++++|.++.|.. .. |+-. + + ..+--.|+|+++.+
T Consensus 236 ~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~n-sss~~~i~~N~~~~~R~~alhy--m--f----s~~g~~i~~N~~~g 306 (455)
T TIGR03808 236 GQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGN-SASNIQITGNSVSDVREVALYS--E--F----AFEGAVIANNTVDG 306 (455)
T ss_pred CCccccEEEEccCCeEEECCEEeccccceEEEE-cccCcEEECcEeeeeeeeEEEE--E--E----eCCCcEEeccEEec
Confidence 45688999999999999999999999 999984 56788888888853 22 3221 1 1 11213567777777
Q ss_pred CceeEEEEEeccC--CeEEeeEEEEeEEEe
Q 042447 250 TANGLRIKTWQTS--AVKISQIMYRNISGT 277 (355)
Q Consensus 250 ~~~gi~Ik~~~~~--~~~i~nItf~NI~g~ 277 (355)
...|+.+-..... -..++.-.+||++.+
T Consensus 307 ~~~G~av~nf~~ggr~~~~~gn~irn~~~~ 336 (455)
T TIGR03808 307 AAVGVSVCNFNEGGRLAVVQGNIIRNLIPK 336 (455)
T ss_pred CcceEEEEeecCCceEEEEecceeeccccC
Confidence 7778777654322 134555567777643
No 50
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.59 E-value=0.45 Score=49.49 Aligned_cols=135 Identities=8% Similarity=-0.007 Sum_probs=77.6
Q ss_pred ccEEEEEEEEeCCCCCC--CCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPEDSP--NTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~~--n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
+++..+|++|.|..... .+-.+.+. ++...+.+|.|...-|-+...+ ..-.+++|++.+.-=+=||.
T Consensus 340 ~~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 408 (566)
T PLN02713 340 QNFVAVNITFRNTAGPAKHQAVALRSG-ADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGN-------- 408 (566)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceeccc--------
Confidence 67888899988753222 22334444 6889999999988777776543 45688999997655455554
Q ss_pred eEEEEEEecceecCCc----eeEEEEEec-cCCeEEeeEEEEeEEEeecCc-------ccEEEEcCCCCceeCEEEEeEE
Q 042447 236 IVTKVVLDTAYLRETA----NGLRIKTWQ-TSAVKISQIMYRNISGTTKSS-------KAMKFACSDTVPCSDIVLSNVN 303 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~~----~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~-------~~i~i~~~~~~~~~nI~~~nV~ 303 (355)
..+.|+||.+.... ..-.|-... .....-..+.|.|++.+.... ..++ .|.+=.+-..+.|-+-.
T Consensus 409 --a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysr~V~~~s~ 485 (566)
T PLN02713 409 --AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTY-LGRPWKEYSRTVVMQSY 485 (566)
T ss_pred --ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCccccccccccee-eecCCCCcceEEEEecc
Confidence 24578888875321 001222111 111123466777777654321 1122 25444455566666665
Q ss_pred EEe
Q 042447 304 LEK 306 (355)
Q Consensus 304 i~~ 306 (355)
|..
T Consensus 486 ~~~ 488 (566)
T PLN02713 486 IDG 488 (566)
T ss_pred cCC
Confidence 554
No 51
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.57 E-value=0.61 Score=47.92 Aligned_cols=205 Identities=11% Similarity=0.069 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhhcC--CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceE----EeecCCCCCCCccCcceEEEEEec
Q 042447 56 DTQAFLNAWNTACST--PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT----IVAPAEPDNWDPKLARIWLDFSKL 129 (355)
Q Consensus 56 dT~Aiq~Ai~~a~~~--gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~----l~~~~~~~~~~~~~~~~~i~~~~~ 129 (355)
|=.-||+||+++-.. ..-+|+|.+|. |.= .+.+.. .+.+++|..+|. |.+.... . ..+-.+. .
T Consensus 217 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv-Y~E-~V~I~~-~k~~i~l~G~g~~~TiIt~~~~~---~----~g~~T~~-S 285 (520)
T PLN02201 217 NFTTIMDAVLAAPDYSTKRYVIYIKKGV-YLE-NVEIKK-KKWNIMMVGDGIDATVITGNRSF---I----DGWTTFR-S 285 (520)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCce-eEE-EEEecC-CCceEEEEecCCCCcEEEeCCcc---C----CCCcccc-e
Confidence 355799999964332 23579999995 874 344422 135677777652 1111000 0 0000000 0
Q ss_pred cCeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCC
Q 042447 130 NGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGS 207 (355)
Q Consensus 130 ~ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~ 207 (355)
.-+.+.| +++..+|++|.|.... ..+-.+.+. ++...+.+|.|...-|-+....
T Consensus 286 AT~~v~~---------------------~~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~f~G~QDTLy~~~-- 341 (520)
T PLN02201 286 ATFAVSG---------------------RGFIARDITFQNTAGPEKHQAVALRSD-SDLSVFYRCAMRGYQDTLYTHT-- 341 (520)
T ss_pred EEEEEEC---------------------CCeEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEeeeeeccCCeeEeCC--
Confidence 0011122 6777888888875322 223334444 6899999999988777777643
Q ss_pred ccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCc----eeEEEEEec-cCCeEEeeEEEEeEEEeecCc-
Q 042447 208 SAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETA----NGLRIKTWQ-TSAVKISQIMYRNISGTTKSS- 281 (355)
Q Consensus 208 ~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~----~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~- 281 (355)
..-..++|++.+.-=+-+|.- ...|+||.+..-. ..-.|-... .....-....|.|++.+....
T Consensus 342 ~Rqyy~~C~I~GtVDFIFG~a----------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~~~ 411 (520)
T PLN02201 342 MRQFYRECRITGTVDFIFGDA----------TAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADTDL 411 (520)
T ss_pred CCEEEEeeEEeecccEEecCc----------eEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCccc
Confidence 346778999977655666552 3578888875421 011222111 111223456777776654221
Q ss_pred ------ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 282 ------KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 282 ------~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
..++| |.+=.+-..+.|-+-.|..
T Consensus 412 ~~~~~~~~~yL-GRPW~~ysrvv~~~t~l~~ 441 (520)
T PLN02201 412 LPYLNTTATYL-GRPWKLYSRTVFMQNYMSD 441 (520)
T ss_pred cccccccceEe-ecCCCCCceEEEEecCcCC
Confidence 12333 5554555666666665554
No 52
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=96.56 E-value=0.63 Score=47.81 Aligned_cols=202 Identities=11% Similarity=0.123 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhcC---CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceE---Ee-ecCCCCCCCccCcceEEEEEec
Q 042447 57 TQAFLNAWNTACST---PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT---IV-APAEPDNWDPKLARIWLDFSKL 129 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~---gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~---l~-~~~~~~~~~~~~~~~~i~~~~~ 129 (355)
-.-||+||+++... ..-+|+|.+|. |.= .+.+.. .+.+++|..+|. +. +.... . ..+-.+. .
T Consensus 237 f~TIq~AI~a~~~~~~~~r~vI~Ik~Gv-Y~E-~V~I~~-~k~nItl~G~g~~~TiIt~~~~~---~----~g~~T~~-S 305 (529)
T PLN02170 237 HKTIGEALLSTSLESGGGRTVIYLKAGT-YHE-NLNIPT-KQKNVMLVGDGKGKTVIVGSRSN---R----GGWTTYQ-T 305 (529)
T ss_pred hhhHHHHHHhcccccCCceEEEEEeCCe-eEE-EEecCC-CCceEEEEEcCCCCeEEEeCCcC---C----CCCcccc-c
Confidence 56799999964332 23579999996 873 233321 235677777652 11 11000 0 0000000 0
Q ss_pred cCeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCC
Q 042447 130 NGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGS 207 (355)
Q Consensus 130 ~ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~ 207 (355)
.-+.+.| .++..+|++|.|.... ..+-.+.+. ++...+.+|.|...-|-+....
T Consensus 306 aTv~v~~---------------------~~F~a~nitf~Ntag~~~~QAVALrv~-gDr~~fy~C~f~GyQDTLy~~~-- 361 (529)
T PLN02170 306 ATVAAMG---------------------DGFIARDITFVNSAGPNSEQAVALRVG-SDKSVVYRCSVEGYQDSLYTHS-- 361 (529)
T ss_pred eEEEEEc---------------------CCeEEEeeEEEecCCCCCCceEEEEec-CCcEEEEeeeEeccCCcceeCC--
Confidence 0011111 6778888888875322 233345554 6889999999988777776543
Q ss_pred ccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCce---eEEEEEec-cCCeEEeeEEEEeEEEeecCccc
Q 042447 208 SAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETAN---GLRIKTWQ-TSAVKISQIMYRNISGTTKSSKA 283 (355)
Q Consensus 208 ~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~---gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~~~ 283 (355)
..-..++|++.+.--+-+|. ....|+||.+.-... .-.|-... .....-....|.|++.+... .
T Consensus 362 ~Rqyy~~C~I~GtVDFIFG~----------a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~--~ 429 (529)
T PLN02170 362 KRQFYRETDITGTVDFIFGN----------SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES--M 429 (529)
T ss_pred CCEEEEeeEEccccceeccc----------ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC--c
Confidence 45678999997765555654 235788888754321 12232111 11122346778888776532 2
Q ss_pred EEEEcCCCCceeCEEEEeEEEEe
Q 042447 284 MKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 284 i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
++| |.+=.+-..+.|-+-.|..
T Consensus 430 ~yL-GRPW~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 430 TYL-GRPWKEYSRTVVMQSFIDG 451 (529)
T ss_pred eee-eCCCCCCceEEEEecccCC
Confidence 333 5444445556666555543
No 53
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.55 E-value=0.79 Score=45.11 Aligned_cols=234 Identities=16% Similarity=0.224 Sum_probs=123.3
Q ss_pred EEeeecCCCCCCCcchHHHHHHHHHHhhcCCCcEEEEcCCeEEEEe-eeeeeccccccEEEEEceEEeecCCCCCCCccC
Q 042447 41 VNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGRHYLVS-ATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKL 119 (355)
Q Consensus 41 ~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~gg~~V~iP~G~tY~i~-~~~l~~p~~~~~~l~~~g~l~~~~~~~~~~~~~ 119 (355)
-.|+.|=+.++. | ++.||+. -++|.+-||..|.+. ++.++ +..++...|.......+.
T Consensus 44 Eqvkt~~~~P~e--D----le~~I~~-----haKVaL~Pg~~Y~i~~~V~I~----~~cYIiGnGA~V~v~~~~------ 102 (386)
T PF01696_consen 44 EQVKTYWMEPGE--D----LEEAIRQ-----HAKVALRPGAVYVIRKPVNIR----SCCYIIGNGATVRVNGPD------ 102 (386)
T ss_pred EeEEEEEcCCCc--C----HHHHHHh-----cCEEEeCCCCEEEEeeeEEec----ceEEEECCCEEEEEeCCC------
Confidence 367778887753 3 5566664 567999899999986 45555 455677766433221100
Q ss_pred cceEEEEEeccCeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEEec-CC
Q 042447 120 ARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKIGT-GD 198 (355)
Q Consensus 120 ~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gD 198 (355)
+.+ |...... .+.|+ ....+|++.|+.+...+ ...|+-+.+..++++.+|.|.+ ..
T Consensus 103 ~~~-f~v~~~~----~~P~V---------------~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g 159 (386)
T PF01696_consen 103 RVA-FRVCMQS----MGPGV---------------VGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHG 159 (386)
T ss_pred Cce-EEEEcCC----CCCeE---------------eeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcc
Confidence 001 1111000 00010 11156777777776543 1246777777888888888854 34
Q ss_pred ceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEEeccCCeEEeeEEEEeEE--
Q 042447 199 DCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNIS-- 275 (355)
Q Consensus 199 D~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~~~~~i~nItf~NI~-- 275 (355)
-|+... ....++.|+|.+.+ |+. +. ....+.|++|+|+.+.-|+... +...+++-.+.|..
T Consensus 160 ~cl~~~---~~~~VrGC~F~~C~~gi~--~~-------~~~~lsVk~C~FekC~igi~s~----G~~~i~hn~~~ec~Cf 223 (386)
T PF01696_consen 160 TCLESW---AGGEVRGCTFYGCWKGIV--SR-------GKSKLSVKKCVFEKCVIGIVSE----GPARIRHNCASECGCF 223 (386)
T ss_pred eeEEEc---CCcEEeeeEEEEEEEEee--cC-------CcceEEeeheeeeheEEEEEec----CCeEEecceecccceE
Confidence 455443 45677788775432 442 21 1245566777776665555221 22233333333332
Q ss_pred ---------------Eeec--CcccEEEEcCCCCceeCEEEEeEEEEeCCCc-c-------eeeeeeeEEeeceeccCCC
Q 042447 276 ---------------GTTK--SSKAMKFACSDTVPCSDIVLSNVNLEKKDGT-V-------ETYCNSAQGIGYGIVHPSA 330 (355)
Q Consensus 276 ---------------g~~~--~~~~i~i~~~~~~~~~nI~~~nV~i~~~~g~-~-------~~~c~n~~g~~~~~~~p~~ 330 (355)
+... ......+-+..++.| ..|..|+|...... . -..|+=--|.+.|+..|.
T Consensus 224 ~l~~g~g~i~~N~v~~~~~~~~~~~~~m~tC~~g~~--~pL~tiHIvs~~r~~wP~F~~Nvl~r~~m~lG~RrG~f~p~- 300 (386)
T PF01696_consen 224 VLMKGTGSIKHNMVCGPNDLPDSMNFQMVTCAGGHV--QPLSTIHIVSHRRRPWPVFEHNVLMRCRMHLGRRRGVFHPK- 300 (386)
T ss_pred EEEcccEEEeccEEeCCCCCCCcccceEEEeCCCeE--EeeeeEEEeCCCCCCCCcccccEEEEEEEEeccceeeeecC-
Confidence 1111 112234333233444 46888999875432 1 122333338888888887
Q ss_pred CccCCCC
Q 042447 331 DCLTSND 337 (355)
Q Consensus 331 ~c~~~~~ 337 (355)
+|.=+.+
T Consensus 301 qc~~s~s 307 (386)
T PF01696_consen 301 QCNFSHS 307 (386)
T ss_pred cccceeE
Confidence 6876554
No 54
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.53 E-value=0.46 Score=49.46 Aligned_cols=205 Identities=12% Similarity=0.110 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhhcC--CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceE----EeecCCCCCCCccCcceEEEEEecc
Q 042447 57 TQAFLNAWNTACST--PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT----IVAPAEPDNWDPKLARIWLDFSKLN 130 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~--gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~----l~~~~~~~~~~~~~~~~~i~~~~~~ 130 (355)
=.-||+||+++-+. .--+|+|.+|. |.= .+.+.. .+.+++|..+|. |.+...... . .+-.+. ..
T Consensus 271 f~TIq~Av~a~p~~~~~r~vI~Ik~Gv-Y~E-~V~i~~-~k~~i~l~G~g~~~TiIt~~~~~~~--g----~~~T~~-sa 340 (572)
T PLN02990 271 YKTINEALNAVPKANQKPFVIYIKQGV-YNE-KVDVTK-KMTHVTFIGDGPTKTKITGSLNFYI--G----KVKTYL-TA 340 (572)
T ss_pred CcCHHHHHhhCcccCCceEEEEEeCce-eEE-EEEecC-CCCcEEEEecCCCceEEEeccccCC--C----Ccccee-ee
Confidence 44699999965332 13479999995 874 233321 235777777762 111111000 0 000000 00
Q ss_pred CeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCc
Q 042447 131 GVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSS 208 (355)
Q Consensus 131 ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ 208 (355)
-+.+.| +++..+|++|.|.... ..+-.+.+. ++...+.+|.|...-|-+... ..
T Consensus 341 T~~v~~---------------------~~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~f~~c~~~G~QDTLy~~--~~ 396 (572)
T PLN02990 341 TVAING---------------------DHFTAKNIGFENTAGPEGHQAVALRVS-ADYAVFYNCQIDGYQDTLYVH--SH 396 (572)
T ss_pred EEEEEc---------------------CCEEEEeeEEEeCCCCCCCceEEEEEc-CCcEEEEeeeEecccchhccC--CC
Confidence 011111 6777888888875322 222334444 688999999998777766653 34
Q ss_pred cEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCc--e--eEEEEEec-cCCeEEeeEEEEeEEEeecCc--
Q 042447 209 AIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETA--N--GLRIKTWQ-TSAVKISQIMYRNISGTTKSS-- 281 (355)
Q Consensus 209 ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~--~--gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~-- 281 (355)
.-..++|++.+.-=+-||.. ...|+||.+.--. . .-.|-... .....-..+.|.|++.+....
T Consensus 397 Rqyy~~C~I~GtVDFIFG~a----------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~~~~ 466 (572)
T PLN02990 397 RQFFRDCTVSGTVDFIFGDA----------KVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEPAYI 466 (572)
T ss_pred cEEEEeeEEecccceEccCc----------eEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCcccc
Confidence 56788999876655556552 3577888875321 1 12222111 111123457777777665321
Q ss_pred -----ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 282 -----KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 282 -----~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
..++| |.+=.+-..+.|-+-.|..
T Consensus 467 ~~~~~~~~yL-GRpW~~ysrvV~~~s~i~~ 495 (572)
T PLN02990 467 PVKSINKAYL-GRPWKEFSRTIIMGTTIDD 495 (572)
T ss_pred ccccccceEe-ecCCCCCceEEEEecccCC
Confidence 12233 5444455566666655543
No 55
>PLN02304 probable pectinesterase
Probab=96.52 E-value=0.81 Score=45.10 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhcC--CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceE---EeecCCCCCCCccCcceEEEEEeccC
Q 042447 57 TQAFLNAWNTACST--PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT---IVAPAEPDNWDPKLARIWLDFSKLNG 131 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~--gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~---l~~~~~~~~~~~~~~~~~i~~~~~~n 131 (355)
=.-||+||+++-+. ..-+|+|-+|. |.= .+.+.. .+.+++|..+|. ++. |....
T Consensus 87 f~TIQ~AIdavP~~~~~r~vI~Ik~Gv-Y~E-kV~Ip~-~K~~Itl~G~g~~~TiIt------~~~~a------------ 145 (379)
T PLN02304 87 FTTVQSAVDAVGNFSQKRNVIWINSGI-YYE-KVTVPK-TKPNITFQGQGFDSTAIA------WNDTA------------ 145 (379)
T ss_pred ccCHHHHHhhCcccCCCcEEEEEeCeE-eEE-EEEECC-CCCcEEEEecCCCCcEEE------ccCcc------------
Confidence 44699999974332 23479999995 863 333321 246788877652 111 11000
Q ss_pred eEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC-------CCCceeeecCcccEEEEeeEEecCCceEEee
Q 042447 132 VLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS-------PNTDGIHITESTNVVLQDCKIGTGDDCISIV 204 (355)
Q Consensus 132 i~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~-------~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik 204 (355)
..+.|+.. ....+ ....++..+|++|.|.... ..+-.+.+. ++...+.+|.|...-|-+...
T Consensus 146 --~~~~gT~~-SaTv~-------v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~-gDra~fy~C~f~G~QDTLy~~ 214 (379)
T PLN02304 146 --KSANGTFY-SASVQ-------VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIA-GDQAAFWGCGFFGAQDTLHDD 214 (379)
T ss_pred --cCCCCccc-eEEEE-------EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEec-CCcEEEEeceEecccceeEeC
Confidence 00001110 00000 0116677888888764311 112234444 689999999998777766643
Q ss_pred cCCccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecC
Q 042447 205 NGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRE 249 (355)
Q Consensus 205 ~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~ 249 (355)
...-.++||++.+.-=+-+|.- ...|++|.+..
T Consensus 215 --~gR~Yf~~CyIeG~VDFIFG~g----------~A~Fe~C~I~s 247 (379)
T PLN02304 215 --RGRHYFKDCYIQGSIDFIFGDA----------RSLYENCRLIS 247 (379)
T ss_pred --CCCEEEEeeEEcccccEEeccc----------eEEEEccEEEE
Confidence 3457789999976655556552 34777887754
No 56
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.50 E-value=0.14 Score=49.08 Aligned_cols=208 Identities=12% Similarity=0.169 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhhcCC--CcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCCCCCCccCcceEEEEEeccCeEE
Q 042447 57 TQAFLNAWNTACSTP--KSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLF 134 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~g--g~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~ni~I 134 (355)
=.-||+||+++.... .-+|+|.+|+ |.= .+.+.. .+.+++|..++. + ...|... . +. .
T Consensus 12 f~TIq~Aida~p~~~~~~~~I~I~~G~-Y~E-~V~i~~-~k~~v~l~G~~~-----~---------~tiI~~~-~-~~-~ 71 (298)
T PF01095_consen 12 FTTIQAAIDAAPDNNTSRYTIFIKPGT-YRE-KVTIPR-SKPNVTLIGEGR-----D---------KTIITGN-D-NA-A 71 (298)
T ss_dssp BSSHHHHHHHS-SSSSS-EEEEE-SEE-EE---EEE-S-TSTTEEEEES-T-----T---------TEEEEE-----T-T
T ss_pred ccCHHHHHHhchhcCCceEEEEEeCee-Ecc-ccEecc-ccceEEEEecCC-----C---------ceEEEEe-c-cc-c
Confidence 345999999754322 3479999995 873 344432 135677776541 0 0111110 0 00 0
Q ss_pred ecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCC--CCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEE
Q 042447 135 QGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPED--SPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKM 212 (355)
Q Consensus 135 ~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i 212 (355)
.|.|+.. ...++ ...+++.++|++|.|... ...+-.+.+. ++.+.+.+|.|...-|-+.... ....+
T Consensus 72 ~~~~t~~--saT~~------v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~--~r~y~ 140 (298)
T PF01095_consen 72 DGGGTFR--SATFS------VNADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANG--GRQYF 140 (298)
T ss_dssp TB-HCGG--C-SEE------E-STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-S--SEEEE
T ss_pred ccccccc--ccccc------ccccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeecc--ceeEE
Confidence 0101100 00010 112788889999887432 1223445654 5889999999988777776643 46788
Q ss_pred EeeEEcCCceEEeccCCcccccceEEEEEEecceecCCc----eeEEEEEec-cCCeEEeeEEEEeEEEeecCc------
Q 042447 213 KRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETA----NGLRIKTWQ-TSAVKISQIMYRNISGTTKSS------ 281 (355)
Q Consensus 213 ~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~----~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~------ 281 (355)
+||++.+.-=+-+|+- ...|++|++.... ..-.|-... .+...-....|.|++.+....
T Consensus 141 ~~c~IeG~vDFIfG~~----------~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~~~~~~~ 210 (298)
T PF01095_consen 141 KNCYIEGNVDFIFGNG----------TAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDSGVSPSYS 210 (298)
T ss_dssp ES-EEEESEEEEEESS----------EEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEESTTTCGGCC
T ss_pred EeeEEEecCcEEECCe----------eEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCcccccccc
Confidence 9999976655666552 3467888876321 112332211 111234466788888765421
Q ss_pred -ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 282 -KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 282 -~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
....| +.+=.+-..+.|-|-.|..
T Consensus 211 ~~~~yL-GRpW~~~s~vvf~~t~m~~ 235 (298)
T PF01095_consen 211 DGSVYL-GRPWGPYSRVVFINTYMDD 235 (298)
T ss_dssp CSTEEE-E--SSEETEEEEES-EE-T
T ss_pred ceeEEe-cCcccceeeEEEEccccCC
Confidence 23444 5555555677787777765
No 57
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.48 E-value=0.58 Score=48.43 Aligned_cols=204 Identities=12% Similarity=0.126 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhhcCC--CcEEEEcCCeEEEEeeeeeeccccccEEEEEceE----EeecCCCCCCCccCcceEEEEEecc
Q 042447 57 TQAFLNAWNTACSTP--KSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT----IVAPAEPDNWDPKLARIWLDFSKLN 130 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~g--g~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~----l~~~~~~~~~~~~~~~~~i~~~~~~ 130 (355)
=.-||+||+++-+.. --+|+|-+|. |.= .+.+.. .+.+++|..+|. |.+....
T Consensus 248 f~TIq~Ai~a~P~~~~~r~vI~Ik~G~-Y~E-~V~i~~-~k~~i~l~G~g~~~TiIt~~~~~------------------ 306 (548)
T PLN02301 248 YKTVKEAVASAPDNSKTRYVIYVKKGT-YKE-NVEIGK-KKKNLMLVGDGMDSTIITGSLNV------------------ 306 (548)
T ss_pred cccHHHHHHhhhhcCCceEEEEEeCce-eeE-EEEecC-CCceEEEEecCCCCcEEEeCCcc------------------
Confidence 556999999654322 2479999996 874 333321 135677777652 1111100
Q ss_pred CeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCc
Q 042447 131 GVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSS 208 (355)
Q Consensus 131 ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ 208 (355)
..|.+++.. ..+. ...+++..+|++|.|.... ..+-.+.+. ++...+.||.|...-|-+...+ .
T Consensus 307 ---~dg~~T~~S--aT~~------v~~~~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~~~G~QDTLy~~~--~ 372 (548)
T PLN02301 307 ---IDGSTTFRS--ATVA------AVGDGFIAQDIWFQNTAGPEKHQAVALRVS-ADQAVINRCRIDAYQDTLYAHS--L 372 (548)
T ss_pred ---CCCCCceee--EEEE------EECCceEEEeeEEEECCCCCCCceEEEEec-CCcEEEEeeeeeeccccceecC--C
Confidence 011111100 0000 0116677888888875321 223345554 6899999999988777776643 3
Q ss_pred cEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCce--e--EEEEEec-cCCeEEeeEEEEeEEEeecCc--
Q 042447 209 AIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETAN--G--LRIKTWQ-TSAVKISQIMYRNISGTTKSS-- 281 (355)
Q Consensus 209 ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~--g--i~Ik~~~-~~~~~i~nItf~NI~g~~~~~-- 281 (355)
.-..++|++.+.--+-||. ...+|+||.+.-... + -.|-... .....-..+.|.|++.+....
T Consensus 373 Rqyy~~C~I~GtVDFIFG~----------a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~~~~ 442 (548)
T PLN02301 373 RQFYRDSYITGTVDFIFGN----------AAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASSDLE 442 (548)
T ss_pred cEEEEeeEEEeccceeccc----------ceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCcccc
Confidence 4688999987655455555 245778888754211 0 1222111 111223467777777654321
Q ss_pred -----ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 282 -----KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 282 -----~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
...+ .|.+=.+-..+.|-+-.|..
T Consensus 443 ~~~~~~~~y-LGRPW~~ysr~V~~~s~l~~ 471 (548)
T PLN02301 443 PVKGSFKTY-LGRPWKEYSRTVVMQSYIDD 471 (548)
T ss_pred cccccccee-eecCCCCCceEEEEecccCC
Confidence 1122 25444455556666555543
No 58
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=96.44 E-value=0.39 Score=47.87 Aligned_cols=208 Identities=13% Similarity=0.169 Sum_probs=105.9
Q ss_pred CCCCCcchHHHHHHHHHHhhcCC---CcEEEEcCCeEEEEeeeeeeccccccEEEEEce-----E-EeecC----CCCCC
Q 042447 49 AGDGVSDDTQAFLNAWNTACSTP---KSVFLVPAGRHYLVSATRFKGPCADKLVIQIDG-----T-IVAPA----EPDNW 115 (355)
Q Consensus 49 ~gDG~tDdT~Aiq~Ai~~a~~~g---g~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g-----~-l~~~~----~~~~~ 115 (355)
.+||..| =.-||+||+++.+.. -.+|+|-+|. |.= .+.+.. .+.+++|..+| + |.... ...+|
T Consensus 87 a~dGsGd-f~TIQaAIdAa~~~~~~~r~~I~Ik~Gv-Y~E-kV~Ip~-~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~ 162 (422)
T PRK10531 87 AGTQGVT-HTTVQAAVDAAIAKRTNKRQYIAVMPGT-YQG-TVYVPA-AAPPITLYGTGEKPIDVKIGLALDGEMSPADW 162 (422)
T ss_pred CCCCCCC-ccCHHHHHhhccccCCCceEEEEEeCce-eEE-EEEeCC-CCceEEEEecCCCCCceEEEecCccccccccc
Confidence 4455433 446999999644321 2478999995 873 333321 24678888754 2 22221 01112
Q ss_pred Cc---------cCcceEEEEEeccCeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC------CCCceee
Q 042447 116 DP---------KLARIWLDFSKLNGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS------PNTDGIH 180 (355)
Q Consensus 116 ~~---------~~~~~~i~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~------~n~DGi~ 180 (355)
.. +....|++++...+-.-.+.|+.. ...+|- ..+++..+|++|.|.... ...-.+.
T Consensus 163 ~~~~~~~g~~~~~~p~~y~~d~~~~~~~~~~gT~~--SATv~v------~ad~F~a~NLTf~Ntag~~~~~~~~QAVALr 234 (422)
T PRK10531 163 RANVNPRGKYMPGKPAWYMYDSCQSKRAATIGTLC--SAVFWS------QNNGLQLQNLTIENTLGDSVDAGNHPAVALR 234 (422)
T ss_pred cccccccccccccccccccccccccccCCCcCcee--eEEEEE------ECCCEEEEeeEEEeCCCCCCCCCcceeEEEE
Confidence 11 011245555432110000001110 001111 127889999999875321 1222344
Q ss_pred ecCcccEEEEeeEEecCCceEEeecC----------CccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCC
Q 042447 181 ITESTNVVLQDCKIGTGDDCISIVNG----------SSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRET 250 (355)
Q Consensus 181 ~~~s~nv~I~n~~i~~gDD~I~ik~g----------~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~ 250 (355)
+. .+.+.+.+|.|...-|-+...+. .....+++|++.+.-=+-+|. -...|+||.+...
T Consensus 235 v~-GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFIFG~----------g~AvFenC~I~s~ 303 (422)
T PRK10531 235 TD-GDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFVFGR----------GAVVFDNTEFRVV 303 (422)
T ss_pred Ec-CCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeecccEEccC----------ceEEEEcCEEEEe
Confidence 44 68999999999877776665211 235788899987655455555 2357888887553
Q ss_pred ce----eEEEEEeccCCeEEeeEEEEeEEEeec
Q 042447 251 AN----GLRIKTWQTSAVKISQIMYRNISGTTK 279 (355)
Q Consensus 251 ~~----gi~Ik~~~~~~~~i~nItf~NI~g~~~ 279 (355)
.. .-.|-........-....|.|++.+..
T Consensus 304 ~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 304 NSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred cCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 21 122221111111233466777776653
No 59
>PLN02497 probable pectinesterase
Probab=96.35 E-value=0.76 Score=44.54 Aligned_cols=202 Identities=13% Similarity=0.098 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhcCC--CcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCCCCCCCccCcceEEEEEeccCeEE
Q 042447 57 TQAFLNAWNTACSTP--KSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAEPDNWDPKLARIWLDFSKLNGVLF 134 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~g--g~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~i~~~~~~ni~I 134 (355)
=.-||+||+++-... --+|+|=+|. |.= .+.+.. .+.+++|..+|. + ...|.+.+... -
T Consensus 44 f~TIq~AIdavP~~~~~~~~I~Ik~G~-Y~E-kV~Ip~-~k~~itl~G~g~-----~---------~tiIt~~~~~~--t 104 (331)
T PLN02497 44 FTTIQSAIDSVPSNNKHWFCINVKAGL-YRE-KVKIPY-DKPFIVLVGAGK-----R---------RTRIEWDDHDS--T 104 (331)
T ss_pred ccCHHHHHhhccccCCceEEEEEeCcE-EEE-EEEecC-CCCcEEEEecCC-----C---------CceEEEecccc--c
Confidence 456999999653322 2369999995 874 333321 245677776652 0 00111110000 0
Q ss_pred ecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCCC---------CCceeeecCcccEEEEeeEEecCCceEEeec
Q 042447 135 QGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSP---------NTDGIHITESTNVVLQDCKIGTGDDCISIVN 205 (355)
Q Consensus 135 ~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~~---------n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~ 205 (355)
.+..++. . ...++..+|++|.|....+ .+-.+.+. ++...+.||.|...-|-+...
T Consensus 105 ~~SaT~~-------v------~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~-gDr~~fy~C~f~G~QDTLy~~- 169 (331)
T PLN02497 105 AQSPTFS-------T------LADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIG-GDKSAFYSCGFAGVQDTLWDS- 169 (331)
T ss_pred cCceEEE-------E------ecCCeEEEccEEEeCCCCccccCCCCCcceEEEEec-CCcEEEEeeEEeccccceeeC-
Confidence 0111111 0 1167788888888753211 12233443 689999999998877766543
Q ss_pred CCccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCce------eEEEEEec-cCCeEEeeEEEEeEEEee
Q 042447 206 GSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETAN------GLRIKTWQ-TSAVKISQIMYRNISGTT 278 (355)
Q Consensus 206 g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~------gi~Ik~~~-~~~~~i~nItf~NI~g~~ 278 (355)
...-.++||++.+.-=+-+|. ....|+||.+..... .=.|-... .....-....|.|++.+.
T Consensus 170 -~gRqyf~~C~IeG~VDFIFG~----------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg 238 (331)
T PLN02497 170 -DGRHYFKRCTIQGAVDFIFGS----------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYG 238 (331)
T ss_pred -CCcEEEEeCEEEecccEEccC----------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEcc
Confidence 345788899887654455554 235778888763211 11222111 111123355677776654
Q ss_pred cCcccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 279 KSSKAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 279 ~~~~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
. ..+.| +.+=.+-..+.|.+-.|..
T Consensus 239 ~--g~~yL-GRPW~~ysrvvf~~t~m~~ 263 (331)
T PLN02497 239 T--GSAYL-GRPWRGYSRVLFYNSNLTD 263 (331)
T ss_pred C--CCEEE-eCCCCCCceEEEEecccCC
Confidence 3 22333 5444445556666555543
No 60
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.34 E-value=1.1 Score=45.64 Aligned_cols=204 Identities=14% Similarity=0.094 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhcC--CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceE---Ee-ecCCCCCCCccCcceEEEEEecc
Q 042447 57 TQAFLNAWNTACST--PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT---IV-APAEPDNWDPKLARIWLDFSKLN 130 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~--gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~---l~-~~~~~~~~~~~~~~~~i~~~~~~ 130 (355)
=.-||+||+++-+. .--+|+|-+|. |.= .+.+.. .+.+++|..+|. +. +.....+ . .. .+. ..
T Consensus 209 f~TIq~AI~a~P~~~~~r~vI~Ik~Gv-Y~E-~V~I~~-~k~nItliGdg~~~TiIt~n~~~~~---g-~~---T~~-SA 277 (509)
T PLN02488 209 YNTVNAAIAAAPEHSRKRFVIYIKTGV-YDE-IVRIGS-TKPNLTLIGDGQDSTIITGNLSASN---G-KR---TFY-TA 277 (509)
T ss_pred ccCHHHHHHhchhcCCCcEEEEEeCCe-eEE-EEEecC-CCccEEEEecCCCceEEEEcccccC---C-CC---cee-eE
Confidence 45699999865332 23479999995 874 333321 245777777762 11 1110000 0 00 000 00
Q ss_pred CeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCc
Q 042447 131 GVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSS 208 (355)
Q Consensus 131 ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ 208 (355)
-+.+.| .++..+|++|.|.... ..+-.+.+. ++...+.+|.|...-|-+... +.
T Consensus 278 Tv~v~g---------------------~gF~A~nitf~Ntag~~~~QAVALrv~-~Dra~Fy~C~f~GyQDTLy~~--~~ 333 (509)
T PLN02488 278 TVASNG---------------------DGFIGIDMCFRNTAGPAKGPAVALRVS-GDMSVIYRCRIEGYQDALYPH--RD 333 (509)
T ss_pred EEEEEc---------------------CCeEEEeeEEEECCCCCCCceEEEEec-CCcEEEEcceeeccCcceeeC--CC
Confidence 011122 5667788888765322 122334443 689999999998777766653 34
Q ss_pred cEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCce----eEEEEEecc-CCeEEeeEEEEeEEEeecCc--
Q 042447 209 AIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETAN----GLRIKTWQT-SAVKISQIMYRNISGTTKSS-- 281 (355)
Q Consensus 209 ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~----gi~Ik~~~~-~~~~i~nItf~NI~g~~~~~-- 281 (355)
.-..++|++.+.-=+-||. ..+.|+||.+..-.. .-.|-.... ....-..+.|.|++.+..+.
T Consensus 334 RqyyrdC~I~GtVDFIFG~----------a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~ 403 (509)
T PLN02488 334 RQFYRECFITGTVDFICGN----------AAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLD 403 (509)
T ss_pred CEEEEeeEEeeccceEecc----------eEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCccc
Confidence 5788999987665555655 246788888754211 112322111 11223467788887665421
Q ss_pred -----ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 282 -----KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 282 -----~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
...+ .|.+=.+-+.+.|-+-.|..
T Consensus 404 ~~~~~~~~Y-LGRPW~~ySrvVf~~s~i~~ 432 (509)
T PLN02488 404 PVKATVKTY-LGRPWRKYSTVAVLQSFIGD 432 (509)
T ss_pred cccccccee-ecCCCCCCccEEEEeccCCC
Confidence 1223 35454555566666555543
No 61
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.29 E-value=0.23 Score=51.27 Aligned_cols=133 Identities=8% Similarity=0.028 Sum_probs=76.6
Q ss_pred ccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
+++..+|++|.|.... ..+-.+.+. ++.+.+.||.|...-|-+.... ..-..++|++.+.-=+-||.-
T Consensus 319 ~~F~a~nit~~Ntag~~~~QAVAl~v~-~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~a------- 388 (537)
T PLN02506 319 RGFIARDITFRNTAGPQNHQAVALRVD-SDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGNG------- 388 (537)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccCc-------
Confidence 6788889998875322 233445554 6999999999988777766543 456889999876655666552
Q ss_pred eEEEEEEecceecCCce----eEEEEEec-cCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 236 IVTKVVLDTAYLRETAN----GLRIKTWQ-TSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~~~----gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
...|+||.+..-.. .-.|-... .....-..+.|.|++.+.. ..++| |.+=.+-..+.|-+-.|..
T Consensus 389 ---~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~--~~~yL-GRPW~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 389 ---AAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT--QPTYL-GRPWKQYSRTVFMNTYMSQ 458 (537)
T ss_pred ---eeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC--CceEE-ecCCCCCceEEEEecCCCC
Confidence 35778888753211 11222111 1111234577777776543 22333 4443444455555544443
No 62
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.24 E-value=0.91 Score=47.26 Aligned_cols=135 Identities=9% Similarity=-0.003 Sum_probs=76.6
Q ss_pred ccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
+++..+|++|.|.... +..-.+.+. ++...+.||.|...-|-+.... ..-..++|++.+.-=+-||.
T Consensus 345 ~~f~a~~itf~Ntag~~~~QAVAl~v~-~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~-------- 413 (565)
T PLN02468 345 KGFMARDMGFRNTAGPIKHQAVALMSS-ADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN-------- 413 (565)
T ss_pred CCeEEEEEEEEeCCCCCCCceEEEEEc-CCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc--------
Confidence 6778889998875322 223345544 6899999999987777666543 34568899987665555655
Q ss_pred eEEEEEEecceecCCc----eeEEEEEec-cCCeEEeeEEEEeEEEeecCc---ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 236 IVTKVVLDTAYLRETA----NGLRIKTWQ-TSAVKISQIMYRNISGTTKSS---KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~~----~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~---~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
..+.|+||.+.-.. ..-.|-... .....-..+.|.|++.+.... ...+ .|.+=.+-..+.|-+-.|..
T Consensus 414 --a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~y-LGRPW~~~sr~v~~~s~~~~ 489 (565)
T PLN02468 414 --SAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTF-LGRPWKNYSTTVIMHSMMGS 489 (565)
T ss_pred --ceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCCCcccccee-eecCCCCCceEEEEecccCC
Confidence 24578888875321 011222111 111233457777777665321 1122 25444445556565555543
No 63
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.17 E-value=1.2 Score=46.62 Aligned_cols=205 Identities=9% Similarity=0.089 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHhhcC--CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceE----EeecCCCCCCCccCcceEEEEEec
Q 042447 56 DTQAFLNAWNTACST--PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT----IVAPAEPDNWDPKLARIWLDFSKL 129 (355)
Q Consensus 56 dT~Aiq~Ai~~a~~~--gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~----l~~~~~~~~~~~~~~~~~i~~~~~ 129 (355)
|=.-||+||+++-.. ..-+|+|.+|. |.=. +.+.. .+.+++|..+|. |.+... +... +-.+. .
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~Gv-Y~E~-V~I~~-~k~~i~l~G~g~~~TiIt~~~~---~~~g----~~T~~-s 364 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGI-YDET-VTVDK-KMVNVTMYGDGSQKTIVTGNKN---FADG----VRTFR-T 364 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCe-eEEE-EEEcC-CCceEEEEecCCCceEEEECCc---ccCC----Cccee-e
Confidence 355799999964332 23479999995 8743 33321 135677777752 111110 0000 00000 0
Q ss_pred cCeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCC--CCCCceeeecCcccEEEEeeEEecCCceEEeecCC
Q 042447 130 NGVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPED--SPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGS 207 (355)
Q Consensus 130 ~ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~ 207 (355)
.-+.+.| .++..+|++|.|... ...+-.+.+. ++...+.||.|...-|-+... .
T Consensus 365 aT~~v~~---------------------~~F~a~nitf~Ntag~~~~QAVAl~v~-~Dr~~f~~c~~~G~QDTLy~~--~ 420 (596)
T PLN02745 365 ATFVALG---------------------EGFMAKSMGFRNTAGPEKHQAVAIRVQ-SDRSIFLNCRFEGYQDTLYAQ--T 420 (596)
T ss_pred EEEEEEc---------------------CCEEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEeeEEeecccccccC--C
Confidence 0011111 677788888887532 1233345554 699999999998777766653 3
Q ss_pred ccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCc----eeEEEEEec-cCCeEEeeEEEEeEEEeecCcc
Q 042447 208 SAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETA----NGLRIKTWQ-TSAVKISQIMYRNISGTTKSSK 282 (355)
Q Consensus 208 ~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~----~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~~ 282 (355)
..-.+++|++.+.-=+-||. ....|+||.+.-.. ..-.|-... .....-..+.|.|++.+.....
T Consensus 421 ~Rqyy~~C~I~GtVDFIFG~----------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~~~ 490 (596)
T PLN02745 421 HRQFYRSCVITGTIDFIFGD----------AAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDEDL 490 (596)
T ss_pred CcEEEEeeEEEeeccEEecc----------eeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCccc
Confidence 45788999987654455655 24578888875321 001222111 1112235677777776643210
Q ss_pred -------cEEEEcCCCCceeCEEEEeEEEEe
Q 042447 283 -------AMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 283 -------~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
..+ .|.+=.+-..+.|-+-.|..
T Consensus 491 ~~~~~~~~~y-LGRPW~~ysrvv~~~s~l~~ 520 (596)
T PLN02745 491 KPVKTEVKSY-LGRPWKEFSRTIVMESTIED 520 (596)
T ss_pred ccccccccee-ccCCCCCCccEEEEecccCC
Confidence 122 35444555566666665554
No 64
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.12 E-value=0.81 Score=48.37 Aligned_cols=204 Identities=12% Similarity=0.108 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhhcC--CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceE----EeecCCCCCCCccCcceEEEEEecc
Q 042447 57 TQAFLNAWNTACST--PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT----IVAPAEPDNWDPKLARIWLDFSKLN 130 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~--gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~----l~~~~~~~~~~~~~~~~~i~~~~~~ 130 (355)
=.-||+||+++-.. .--+|+|-+|. |.= .+.+.. .+.++.|..+|. |.+.. .+... +-.+. ..
T Consensus 262 f~TIq~Av~a~P~~~~~r~vI~Ik~Gv-Y~E-~V~I~~-~k~~i~l~Gdg~~~TiIt~~~---~~~dg----~~T~~-SA 330 (670)
T PLN02217 262 YKTINEALNFVPKKKNTTFVVHIKAGI-YKE-YVQVNR-SMTHLVFIGDGPDKTVISGSK---SYKDG----ITTYK-TA 330 (670)
T ss_pred ccCHHHHHHhccccCCceEEEEEeCCc-eEE-EEEEcC-CCCcEEEEecCCCCeEEEcCC---ccCCC----CCccc-eE
Confidence 45699999964332 23479999995 874 344422 135667766651 11111 00000 00000 00
Q ss_pred CeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCCC--CCceeeecCcccEEEEeeEEecCCceEEeecCCc
Q 042447 131 GVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDSP--NTDGIHITESTNVVLQDCKIGTGDDCISIVNGSS 208 (355)
Q Consensus 131 ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~~--n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ 208 (355)
-+.+.| .++..+|++|.|..... .+-.+.+. ++...+.||.|...-|-+... ..
T Consensus 331 T~~v~g---------------------~~F~a~nitf~Ntag~~~~QAVAlrv~-~Dra~fy~C~f~G~QDTLy~~--~~ 386 (670)
T PLN02217 331 TVAIVG---------------------DHFIAKNIGFENTAGAIKHQAVAIRVL-SDESIFYNCKFDGYQDTLYAH--SH 386 (670)
T ss_pred EEEEEC---------------------CCeEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEcceeeeccchhccC--CC
Confidence 122222 67778888888753222 22334444 688999999997766666553 34
Q ss_pred cEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCc----eeEEEEEec-cCCeEEeeEEEEeEEEeecCc--
Q 042447 209 AIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETA----NGLRIKTWQ-TSAVKISQIMYRNISGTTKSS-- 281 (355)
Q Consensus 209 ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~----~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~-- 281 (355)
.-.+++|++.+.--+-||. ...+|+||.+..-. ..-.|-... .....-..+.|.|++.+....
T Consensus 387 Rqyy~~C~I~GtVDFIFG~----------a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~ 456 (670)
T PLN02217 387 RQFYRDCTISGTIDFLFGD----------AAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYL 456 (670)
T ss_pred cEEEEeCEEEEeccEEecC----------ceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCcccc
Confidence 5678888887654455554 23577777775321 112222111 111223456777777655321
Q ss_pred -----ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 282 -----KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 282 -----~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
..++| |.+=.+-..+.|-+-.|..
T Consensus 457 ~~~~~~~~yL-GRPW~~ysrvVf~~t~l~~ 485 (670)
T PLN02217 457 AVKETSKAYL-GRPWKEYSRTIIMNTFIPD 485 (670)
T ss_pred ccccccceee-ccCCCCCceEEEEecccCC
Confidence 12233 5444455556665555443
No 65
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.07 E-value=1.2 Score=46.66 Aligned_cols=205 Identities=13% Similarity=0.065 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhhcC--CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceE----EeecCCCCCCCccCcceEEEEEecc
Q 042447 57 TQAFLNAWNTACST--PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT----IVAPAEPDNWDPKLARIWLDFSKLN 130 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~--gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~----l~~~~~~~~~~~~~~~~~i~~~~~~ 130 (355)
=.-||+||+++-.. ..-+|+|-+|. |.=..+.+.. .+.+++|..+|. |.+.....+ .+-.+.. .
T Consensus 284 f~TIq~Ai~a~P~~~~~r~vI~Ik~G~-Y~E~~v~i~~-~k~ni~l~G~g~~~TiIt~~~~~~~-------~~~t~~s-a 353 (587)
T PLN02484 284 FKTISEAIKKAPEHSSRRTIIYVKAGR-YEENNLKVGR-KKTNLMFIGDGKGKTVITGGKSIFD-------NLTTFHT-A 353 (587)
T ss_pred cccHHHHHHhccccCCCcEEEEEeCCE-EEEEEEEECC-CCceEEEEecCCCCeEEecCCcccC-------CCcccce-E
Confidence 45699999964332 23479999996 8742233321 235777777652 211111000 0000000 0
Q ss_pred CeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCc
Q 042447 131 GVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSS 208 (355)
Q Consensus 131 ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ 208 (355)
-+.+.| .++..+|++|.|.... ..+-.+.+. ++...+.||.|...-|-+...+ .
T Consensus 354 T~~v~~---------------------~~F~a~~itf~Ntag~~~~QAvAlrv~-~D~~~fy~C~~~G~QDTLy~~~--~ 409 (587)
T PLN02484 354 SFAATG---------------------AGFIARDMTFENWAGPAKHQAVALRVG-ADHAVVYRCNIIGYQDTLYVHS--N 409 (587)
T ss_pred EEEEEc---------------------CCEEEEeeEEEECCCCCCCceEEEEec-CCcEEEEeeeEeccCcccccCC--C
Confidence 022222 5677788888765321 223345554 6899999999988777666533 4
Q ss_pred cEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCc----eeEEEEEec-cCCeEEeeEEEEeEEEeecCc--
Q 042447 209 AIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETA----NGLRIKTWQ-TSAVKISQIMYRNISGTTKSS-- 281 (355)
Q Consensus 209 ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~----~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~-- 281 (355)
.-.+++|++.+.-=+-||. ....|+||.+.--. ..-.|-... .....-..+.|.|++.+....
T Consensus 410 Rqyy~~C~I~GtVDFIFG~----------a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~ 479 (587)
T PLN02484 410 RQFFRECDIYGTVDFIFGN----------AAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLA 479 (587)
T ss_pred cEEEEecEEEeccceeccc----------ceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccc
Confidence 5678899987655455555 23578888875321 111222111 111234567788887654321
Q ss_pred -----ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 282 -----KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 282 -----~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
..++ .|.+=.+-..+.|-+-.|..
T Consensus 480 ~~~~~~~~y-LGRPW~~ysrvV~~~s~i~~ 508 (587)
T PLN02484 480 ASKGSFPTY-LGRPWKLYSRTVYMMSYMGD 508 (587)
T ss_pred cccCcccee-ccCCCCCCceEEEEecccCC
Confidence 1122 25444455566666655544
No 66
>smart00656 Amb_all Amb_all domain.
Probab=95.89 E-value=0.047 Score=48.72 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=55.5
Q ss_pred eeeecCcccEEEEeeEEec-------CCceEEeecCCccEEEEeeEEcCCceEEeccCCccc---ccceEEEEEEeccee
Q 042447 178 GIHITESTNVVLQDCKIGT-------GDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDN---SMGIVTKVVLDTAYL 247 (355)
Q Consensus 178 Gi~~~~s~nv~I~n~~i~~-------gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~---~~~~v~nV~i~n~~~ 247 (355)
||.+..++||.|+|.+|+. +.|+|.+ .++.+|.|++|++..+.....+....+. ......+|++.+|.+
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~-~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISI-DGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEE-eCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 5666667899999999975 4589999 5689999999999765212111110000 012347899999999
Q ss_pred cCCceeEEEEE
Q 042447 248 RETANGLRIKT 258 (355)
Q Consensus 248 ~~~~~gi~Ik~ 258 (355)
.+-..+..+..
T Consensus 112 ~~h~~~~liG~ 122 (190)
T smart00656 112 HNHWKVMLLGH 122 (190)
T ss_pred ecCCEEEEEcc
Confidence 98888877764
No 67
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=95.86 E-value=0.18 Score=52.02 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=53.1
Q ss_pred ccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
.++..+|++|.|.... ..+-.+.+. ++.+.+.+|.|...-|-+... +..-..++|++.+.-=+=+|.
T Consensus 317 ~~F~a~nitf~Ntag~~~~QAVAl~v~-~D~~~fy~c~~~G~QDTLy~~--~~Rqyy~~C~I~GtVDFIFG~-------- 385 (541)
T PLN02416 317 EGFLARDITIENTAGPEKHQAVALRVN-ADLVALYRCTINGYQDTLYVH--SFRQFYRECDIYGTIDYIFGN-------- 385 (541)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEEc-CccEEEEcceEecccchhccC--CCceEEEeeEEeeccceeecc--------
Confidence 6777888888875332 233345554 688999999998777766653 345688899987655455555
Q ss_pred eEEEEEEecceecC
Q 042447 236 IVTKVVLDTAYLRE 249 (355)
Q Consensus 236 ~v~nV~i~n~~~~~ 249 (355)
....|+||.+..
T Consensus 386 --a~avfq~c~i~~ 397 (541)
T PLN02416 386 --AAVVFQACNIVS 397 (541)
T ss_pred --ceEEEeccEEEE
Confidence 235777887754
No 68
>PLN02197 pectinesterase
Probab=95.75 E-value=0.55 Score=48.99 Aligned_cols=133 Identities=12% Similarity=0.105 Sum_probs=76.2
Q ss_pred ccEEEEEEEEeCCCC--CCCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPED--SPNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
.++..+|++|.|... ...+-.+.+. ++...+.+|.|...-|-+.... ..-.+++|++.+.-=+-||..
T Consensus 364 ~~F~a~nitf~Ntag~~~~QAVAlrv~-~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------- 433 (588)
T PLN02197 364 EGFMAKWIGFKNTAGPMGHQAVAIRVN-GDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGKS------- 433 (588)
T ss_pred CcEEEEEeEEEeCCCCCCCceEEEEec-CCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccce-------
Confidence 677788888887532 2233445554 6999999999988777777643 356788999876544555442
Q ss_pred eEEEEEEecceecCCc--ee--EEEEEeccC---CeEEeeEEEEeEEEeecCc-------ccEEEEcCCCCceeCEEEEe
Q 042447 236 IVTKVVLDTAYLRETA--NG--LRIKTWQTS---AVKISQIMYRNISGTTKSS-------KAMKFACSDTVPCSDIVLSN 301 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~~--~g--i~Ik~~~~~---~~~i~nItf~NI~g~~~~~-------~~i~i~~~~~~~~~nI~~~n 301 (355)
...|+||.+.-.. .| -.| +.++. ...-..+.|.|++.+.... ...+ .|.+=.+-..+.|-+
T Consensus 434 ---~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~y-LGRPW~~ysrvV~~~ 508 (588)
T PLN02197 434 ---ATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASY-LGRPWKKFSTTVIIS 508 (588)
T ss_pred ---eeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccEEecCCcccccccccccc-cCCCCCCCceEEEEe
Confidence 3578888765221 11 122 22221 1123457777777655321 1122 354444555666666
Q ss_pred EEEE
Q 042447 302 VNLE 305 (355)
Q Consensus 302 V~i~ 305 (355)
-.|.
T Consensus 509 s~~~ 512 (588)
T PLN02197 509 TEIG 512 (588)
T ss_pred cccC
Confidence 5554
No 69
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=95.65 E-value=0.83 Score=47.27 Aligned_cols=79 Identities=8% Similarity=0.044 Sum_probs=52.2
Q ss_pred ccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
+++..+|++|.|.... ..+-.+.+. ++...+.+|.|...-|-+...+ ..-..+||++.+.-=+-||.
T Consensus 313 ~~F~a~~it~~Ntag~~~~QAvAlrv~-~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~-------- 381 (538)
T PLN03043 313 ERFVAVDVTFRNTAGPEKHQAVALRNN-ADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGN-------- 381 (538)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEEc-CCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeec--------
Confidence 6788889998875322 222334444 6889999999987777666533 34678888887655455554
Q ss_pred eEEEEEEecceecC
Q 042447 236 IVTKVVLDTAYLRE 249 (355)
Q Consensus 236 ~v~nV~i~n~~~~~ 249 (355)
....|+||.+.-
T Consensus 382 --a~avfq~c~i~~ 393 (538)
T PLN03043 382 --AAAIFQNCNLYA 393 (538)
T ss_pred --ceeeeeccEEEE
Confidence 235777777643
No 70
>PLN02314 pectinesterase
Probab=95.60 E-value=0.6 Score=48.83 Aligned_cols=135 Identities=8% Similarity=0.002 Sum_probs=73.4
Q ss_pred ccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
+++..+|++|.|.... ..+-.+.+. ++...+.||.|...-|-+...+ ..-..++|++.+.-=+-||.
T Consensus 365 ~~F~a~~itf~Ntag~~~~QAvAlrv~-~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~-------- 433 (586)
T PLN02314 365 KGFIAKDMGFINTAGAAKHQAVAFRSG-SDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGN-------- 433 (586)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEec-CCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccC--------
Confidence 6677888888775322 222334444 6888999999987777666533 34678889887654455554
Q ss_pred eEEEEEEecceecCCc----eeEEEEEec-cCCeEEeeEEEEeEEEeecCc--ccEEEEcCCCCceeCEEEEeEEEEe
Q 042447 236 IVTKVVLDTAYLRETA----NGLRIKTWQ-TSAVKISQIMYRNISGTTKSS--KAMKFACSDTVPCSDIVLSNVNLEK 306 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~~----~gi~Ik~~~-~~~~~i~nItf~NI~g~~~~~--~~i~i~~~~~~~~~nI~~~nV~i~~ 306 (355)
....|+||.+.--. ..-.|-... .....-..+.|.|++.+.... ...+| |.+=.+-..+.|-+-.|..
T Consensus 434 --a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~yL-GRpW~~ysr~v~~~s~i~~ 508 (586)
T PLN02314 434 --AAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFGNLTAPTYL-GRPWKDFSTTVIMQSYIGS 508 (586)
T ss_pred --ceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCCcccccccc-cCCCCCCceEEEEecccCC
Confidence 23577788775321 001222111 111233456777777655321 11222 4333344445555554443
No 71
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=95.45 E-value=0.11 Score=49.13 Aligned_cols=92 Identities=16% Similarity=0.258 Sum_probs=67.0
Q ss_pred CceeeecCcccEEEEeeEEec-C-----CceEEeecCCccEEEEeeEEcCC-c--------e-EEeccCCcccccceEEE
Q 042447 176 TDGIHITESTNVVLQDCKIGT-G-----DDCISIVNGSSAIKMKRIFCGPG-H--------G-ISIGSLGKDNSMGIVTK 239 (355)
Q Consensus 176 ~DGi~~~~s~nv~I~n~~i~~-g-----DD~I~ik~g~~ni~i~n~~~~~~-~--------G-i~iGS~g~~~~~~~v~n 239 (355)
.-|+.+..++||.|+|.+|.- . +|+|.|..++.||.|.+|++..+ . | +.|+- ....
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~--------~Any 187 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKK--------DANY 187 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEecc--------CCcE
Confidence 357888889999999999953 2 59999988899999999999642 1 2 33321 2357
Q ss_pred EEEecceecCCceeEEEEEecc-------CCeEEeeEEEEeEE
Q 042447 240 VVLDTAYLRETANGLRIKTWQT-------SAVKISQIMYRNIS 275 (355)
Q Consensus 240 V~i~n~~~~~~~~gi~Ik~~~~-------~~~~i~nItf~NI~ 275 (355)
|+|.+|.+++...+..+..... -.+++.+-.|+|+.
T Consensus 188 ITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 188 ITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred EEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 8999999999988877754321 12566666777764
No 72
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=95.39 E-value=0.76 Score=48.05 Aligned_cols=148 Identities=13% Similarity=0.125 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhcCC--CcEEEEcCCeEEEEeeeeeeccccccEEEEEceE----EeecCCCCCCCccCcceEEEEEecc
Q 042447 57 TQAFLNAWNTACSTP--KSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGT----IVAPAEPDNWDPKLARIWLDFSKLN 130 (355)
Q Consensus 57 T~Aiq~Ai~~a~~~g--g~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~----l~~~~~~~~~~~~~~~~~i~~~~~~ 130 (355)
=.-||+||+++-... --+|+|-+|. |.=. +.+.. .+.++.|..+|. +.+..... ... . .+.. .
T Consensus 287 f~TI~~Av~a~p~~~~~r~vI~ik~Gv-Y~E~-V~i~~-~k~ni~l~Gdg~~~TiIt~~~~~~---~g~-~---t~~s-a 355 (587)
T PLN02313 287 FTTVAAAVAAAPEKSNKRFVIHIKAGV-YREN-VEVTK-KKKNIMFLGDGRGKTIITGSRNVV---DGS-T---TFHS-A 355 (587)
T ss_pred CccHHHHHHhccccCCceEEEEEeCce-eEEE-EEeCC-CCCeEEEEecCCCccEEEeCCccc---CCC-C---ceee-E
Confidence 557999999653322 2489999995 8743 33321 135677777652 11111000 000 0 0000 0
Q ss_pred CeEEecceEEECcCCccccCCCCCCCcccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCc
Q 042447 131 GVLFQGSGVIDGSGSKWWASSCKKNKSESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSS 208 (355)
Q Consensus 131 ni~I~G~G~IdG~G~~~~~~~~~~~~~~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ 208 (355)
-+.+.| +++..+|++|.|.... ..+-.+.+. ++...+.+|.|...-|-+...+ .
T Consensus 356 t~~v~~---------------------~~F~a~~itf~Ntag~~~~QAvAlrv~-~D~~~fy~C~~~g~QDTLy~~~--~ 411 (587)
T PLN02313 356 TVAAVG---------------------ERFLARDITFQNTAGPSKHQAVALRVG-SDFSAFYQCDMFAYQDTLYVHS--N 411 (587)
T ss_pred EEEEEC---------------------CCeEEEeeEEEeCCCCCCCceEEEEec-CCcEEEEeeeEecccchhccCC--C
Confidence 011111 6677888888775322 233345554 6888999999987777666533 3
Q ss_pred cEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecC
Q 042447 209 AIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRE 249 (355)
Q Consensus 209 ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~ 249 (355)
.-..++|++.+.--+-||. ..++|+||.+.-
T Consensus 412 rq~y~~c~I~GtvDFIFG~----------a~avfq~c~i~~ 442 (587)
T PLN02313 412 RQFFVKCHITGTVDFIFGN----------AAAVLQDCDINA 442 (587)
T ss_pred cEEEEeeEEeeccceeccc----------eeEEEEccEEEE
Confidence 4578888887654455544 245778888753
No 73
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.30 E-value=0.053 Score=48.81 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=47.8
Q ss_pred eeeec-CcccEEEEeeEEec----------------CCceEEeecCCccEEEEeeEEcCC---------ce-EEeccCCc
Q 042447 178 GIHIT-ESTNVVLQDCKIGT----------------GDDCISIVNGSSAIKMKRIFCGPG---------HG-ISIGSLGK 230 (355)
Q Consensus 178 Gi~~~-~s~nv~I~n~~i~~----------------gDD~I~ik~g~~ni~i~n~~~~~~---------~G-i~iGS~g~ 230 (355)
|+.+. .++||.|+|.+|+. +.|+|.+. ++++|.|.+|++..+ .| +.+..
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~-~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~--- 113 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID-NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKK--- 113 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-STEEEEEES-EEEETTS-GGGSSSSSSEEEES---
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-ecccEEEeccEEeccccccccccCCceEEEEe---
Confidence 66665 68999999999976 56999996 667999999998543 22 33321
Q ss_pred ccccceEEEEEEecceecCCceeEEEE
Q 042447 231 DNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 231 ~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
...+|+|++|.|.+...+..+.
T Consensus 114 -----~s~~vTiS~n~f~~~~k~~l~G 135 (200)
T PF00544_consen 114 -----GSDNVTISNNIFDNHNKTMLIG 135 (200)
T ss_dssp -----STEEEEEES-EEEEEEETCEES
T ss_pred -----CCceEEEEchhccccccccccC
Confidence 2378999999998876554443
No 74
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=93.94 E-value=1.5 Score=42.05 Aligned_cols=81 Identities=9% Similarity=0.197 Sum_probs=45.7
Q ss_pred ccEEEEEEEEeCCCC-CC---CCceeeec-CcccEEEEeeEEecCCceEEeecC----------CccEEEEeeEEcCCce
Q 042447 158 ESVRVYQVLVSAPED-SP---NTDGIHIT-ESTNVVLQDCKIGTGDDCISIVNG----------SSAIKMKRIFCGPGHG 222 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~-~~---n~DGi~~~-~s~nv~I~n~~i~~gDD~I~ik~g----------~~ni~i~n~~~~~~~G 222 (355)
.++.+++++|.+... .. |.-.+-+. .++.+.++||.+--..|-+.++.+ .-.-+++||++.+.--
T Consensus 189 ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~GdvD 268 (405)
T COG4677 189 NDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDVD 268 (405)
T ss_pred CCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccce
Confidence 456666666665321 11 11122221 257888899988666666665543 1134578888876555
Q ss_pred EEeccCCcccccceEEEEEEecceec
Q 042447 223 ISIGSLGKDNSMGIVTKVVLDTAYLR 248 (355)
Q Consensus 223 i~iGS~g~~~~~~~v~nV~i~n~~~~ 248 (355)
+-+|+- -.+|.+|.|.
T Consensus 269 fIfGsg----------taVFd~c~i~ 284 (405)
T COG4677 269 FIFGSG----------TAVFDNCEIQ 284 (405)
T ss_pred EEeccc----------eEEeccceEE
Confidence 666662 2366666654
No 75
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=93.20 E-value=4 Score=37.07 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=37.9
Q ss_pred ccEEEEEEEEeCCCCCCCCceeeecCcccEEEEeeEE-ecCCceEEeecCCccEEEEe
Q 042447 158 ESVRVYQVLVSAPEDSPNTDGIHITESTNVVLQDCKI-GTGDDCISIVNGSSAIKMKR 214 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~~n~DGi~~~~s~nv~I~n~~i-~~gDD~I~ik~g~~ni~i~n 214 (355)
...+|+|+.|-. +..|||+... +.+|+|+++ ..++|++++|..+..+.|.+
T Consensus 61 ~GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~g 112 (215)
T PF03211_consen 61 DGATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIG 112 (215)
T ss_dssp TTEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEES
T ss_pred CCCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeC
Confidence 788899998854 3458999986 889999999 46999999988755444443
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=92.20 E-value=7.6 Score=37.62 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=38.4
Q ss_pred ccEEEEEEEEeCCC---CCCCCceeeecCcccEEEEeeEEecCCceEEeec
Q 042447 158 ESVRVYQVLVSAPE---DSPNTDGIHITESTNVVLQDCKIGTGDDCISIVN 205 (355)
Q Consensus 158 ~nv~i~~v~I~~~~---~~~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~ 205 (355)
.++.+++.+|..-. ......||.+++++...|....|.-+.|||..+.
T Consensus 129 ~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~ 179 (408)
T COG3420 129 ADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT 179 (408)
T ss_pred CceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc
Confidence 67778888876432 1345789999999999999999999999999854
No 77
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=89.34 E-value=5.4 Score=37.79 Aligned_cols=136 Identities=12% Similarity=0.135 Sum_probs=69.7
Q ss_pred CcccEEEEeeEEecCCceEEe---ecCCccEEEEeeEEcC--CceEEeccCCcccccceEEEEEEecceecC--CceeEE
Q 042447 183 ESTNVVLQDCKIGTGDDCISI---VNGSSAIKMKRIFCGP--GHGISIGSLGKDNSMGIVTKVVLDTAYLRE--TANGLR 255 (355)
Q Consensus 183 ~s~nv~I~n~~i~~gDD~I~i---k~g~~ni~i~n~~~~~--~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~--~~~gi~ 255 (355)
.-+|.+|++.++.-..-+|-- ..-....+|.||.+.. +.+|...-. -....--+++-.++.+...+ ..+||.
T Consensus 149 vmrnl~id~itv~~anyailrqgfhnq~dgaritn~rfs~lqgdaiewnva-indr~ilisdhvie~inctngkinwgig 227 (464)
T PRK10123 149 VMRNLTIDNLTVSHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVA-INDRDILISDHVIERINCTNGKINWGIG 227 (464)
T ss_pred hhhccEEccEEEeeccHHHHhhhhhhccccceeeccccccccCceEEEEEE-ecccceeeehheheeecccCCcccceee
Confidence 357788888777533332221 1124567788888753 333322110 00011223333444333333 346777
Q ss_pred EEEe-------ccCCeEEeeEEEEeEEEeecCcccEEEEcCCCCceeCEEEEeEEEEeCC--Cc----ce-eeeeeeEE
Q 042447 256 IKTW-------QTSAVKISQIMYRNISGTTKSSKAMKFACSDTVPCSDIVLSNVNLEKKD--GT----VE-TYCNSAQG 320 (355)
Q Consensus 256 Ik~~-------~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~~~~~~nI~~~nV~i~~~~--g~----~~-~~c~n~~g 320 (355)
|.-. .+....++|...-||+|+.- +.-+.+...+-.-++|++-.|++=...+ |- .+ +-|+|..-
T Consensus 228 iglagstydn~ype~q~vknfvvanitgs~c-rqlvhvengkhfvirnvkaknitpdfskkagidnatvaiygcdnfvi 305 (464)
T PRK10123 228 IGLAGSTYDNNYPEDQAVKNFVVANITGSDC-RQLIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVI 305 (464)
T ss_pred eeeccccccCCCchhhhhhhEEEEeccCcCh-hheEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEcccceEE
Confidence 7521 13445799999999998753 4456665544334566666666544432 21 22 34887653
No 78
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=88.73 E-value=3.5 Score=40.95 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=48.2
Q ss_pred ccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCceeEEEEEeccCCeEEeeEEEEeEEEeecCcccEEEE
Q 042447 208 SAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFA 287 (355)
Q Consensus 208 ~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~~~~~i~nItf~NI~g~~~~~~~i~i~ 287 (355)
.|-.|+|+.....+|+.+|-.|+ .+.|+||++++|. ..|+.+++ ..-.++||+.-+..-..- .+-+|.
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG~---~~yvsni~~~d~~----g~G~~~~~---~~~~ftNitvId~N~~n~--~~nQI~ 378 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDGK---GGYVSNITVQDCA----GAGIFIRG---TNKVFTNITVIDTNTDNF--NANQIY 378 (549)
T ss_dssp ---EEEEEEEES-SSESCEEECC---S-EEEEEEEES-S----SESEEEEC---CS-EEEEEEEES-STT-S--SSECEE
T ss_pred hhhhhhhhheeccceeeeeecCC---CceEeeEEeeccc----CCceEEee---cCCceeeeEEEeccccCC--CCceEE
Confidence 57889999988888888877653 5688999999887 46677763 334566666554432221 223333
Q ss_pred cCCCCceeCEEEEeEEEEeCCCc
Q 042447 288 CSDTVPCSDIVLSNVNLEKKDGT 310 (355)
Q Consensus 288 ~~~~~~~~nI~~~nV~i~~~~g~ 310 (355)
|....-+..|++-+|+-+...|.
T Consensus 379 i~G~~~vnGir~igi~~~~~~Gl 401 (549)
T PF09251_consen 379 IEGACIVNGIRLIGIKPTPSQGL 401 (549)
T ss_dssp E-SS-EEEEEEE-ECC-STSSSE
T ss_pred EecceEEcceeEeeeeccCCCce
Confidence 33334445555555555555554
No 79
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=87.76 E-value=0.87 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=27.9
Q ss_pred eeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEE
Q 042447 178 GIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFC 217 (355)
Q Consensus 178 Gi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~ 217 (355)
||.++.|.+.+|++++|....++|.+... .+-+++++++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~s-~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTDS-SNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEeC-CCCEeECCEE
Confidence 67788888888999999877778888544 4444444444
No 80
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=70.98 E-value=30 Score=30.67 Aligned_cols=67 Identities=12% Similarity=0.055 Sum_probs=37.2
Q ss_pred cccEEEEeeEEec-CC-------ceEEeecCCccEEEEeeEEcCCceEEeccC---CcccccceEEEEEEecceecCCc
Q 042447 184 STNVVLQDCKIGT-GD-------DCISIVNGSSAIKMKRIFCGPGHGISIGSL---GKDNSMGIVTKVVLDTAYLRETA 251 (355)
Q Consensus 184 s~nv~I~n~~i~~-gD-------D~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~---g~~~~~~~v~nV~i~n~~~~~~~ 251 (355)
.++|+|++..|.. |- .+|.. +|-.+.+|||+.+.+.++..|... +.....+.-.-.+++|+.+.++.
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~-sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVT-SGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEe-ccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 3588888888743 21 44554 566688899999887654333221 10001111123567777776654
No 81
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=66.79 E-value=31 Score=34.17 Aligned_cols=85 Identities=8% Similarity=0.055 Sum_probs=61.3
Q ss_pred CcccEEEEeeEEecCC--ceEEeecCCccEEEEeeEEcCCceEEeccCCcccccceEEEEEEecceecCCceeEEEEEec
Q 042447 183 ESTNVVLQDCKIGTGD--DCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQ 260 (355)
Q Consensus 183 ~s~nv~I~n~~i~~gD--D~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~ 260 (355)
.-.+|++.||.|...| -++.+ ...+++++-+|.|.+-+|..+.+- ....++.|+|.++..|+.-+ .
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f-~~~t~~~~hgC~F~gf~g~cl~~~---------~~~~VrGC~F~~C~~gi~~~--~ 186 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVF-HANTNTLFHGCSFFGFHGTCLESW---------AGGEVRGCTFYGCWKGIVSR--G 186 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEE-EecceEEEEeeEEecCcceeEEEc---------CCcEEeeeEEEEEEEEeecC--C
Confidence 3468999999997655 44554 456899999999988778777443 23478888888887776443 2
Q ss_pred cCCeEEeeEEEEeEEEeec
Q 042447 261 TSAVKISQIMYRNISGTTK 279 (355)
Q Consensus 261 ~~~~~i~nItf~NI~g~~~ 279 (355)
.....|++-+|+.+..-..
T Consensus 187 ~~~lsVk~C~FekC~igi~ 205 (386)
T PF01696_consen 187 KSKLSVKKCVFEKCVIGIV 205 (386)
T ss_pred cceEEeeheeeeheEEEEE
Confidence 3457889999998875443
No 82
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=64.53 E-value=49 Score=30.80 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=47.7
Q ss_pred cccEEEEeeEEecCC----ceEEeecCCccEEEEeeEEcC--CceEEeccCCcccccceEEEEEEecceecCCceeEEEE
Q 042447 184 STNVVLQDCKIGTGD----DCISIVNGSSAIKMKRIFCGP--GHGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 184 s~nv~I~n~~i~~gD----D~I~ik~g~~ni~i~n~~~~~--~~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
..+.+|+..+|.+.+ -+|.|++. +.+|+||+|.. .+|+.+-... ....+.+++|++..+.....|+.+.
T Consensus 96 ~~~~~i~GvtItN~n~~~g~Gi~Iess--~~tI~Nntf~~~~~~GI~v~g~~---~~~~i~~~vI~GN~~~~~~~Gi~i~ 170 (246)
T PF07602_consen 96 ANNATISGVTITNPNIARGTGIWIESS--SPTIANNTFTNNGREGIFVTGTS---ANPGINGNVISGNSIYFNKTGISIS 170 (246)
T ss_pred cCCCEEEEEEEEcCCCCcceEEEEecC--CcEEEeeEEECCccccEEEEeee---cCCcccceEeecceEEecCcCeEEE
Confidence 345566666666553 36777553 89999999965 4587662211 0235678889999988888899886
Q ss_pred Ee
Q 042447 258 TW 259 (355)
Q Consensus 258 ~~ 259 (355)
..
T Consensus 171 ~~ 172 (246)
T PF07602_consen 171 DN 172 (246)
T ss_pred cc
Confidence 43
No 83
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=62.82 E-value=1.7e+02 Score=30.18 Aligned_cols=134 Identities=12% Similarity=0.029 Sum_probs=75.9
Q ss_pred ccEEEEEEEEeCCCCC--CCCceeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCceEEeccCCcccccc
Q 042447 158 ESVRVYQVLVSAPEDS--PNTDGIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGHGISIGSLGKDNSMG 235 (355)
Q Consensus 158 ~nv~i~~v~I~~~~~~--~n~DGi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~Gi~iGS~g~~~~~~ 235 (355)
+++..+|++|.|.... ..+-.+.+. ++...+.+|.|...-|-+.... ..-.+++|++.+.-=+-||.-
T Consensus 270 ~~F~a~nitf~Ntag~~~~QAvAl~v~-~D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG~a------- 339 (497)
T PLN02698 270 DGFIARDIGFKNAAGPKGEQAIALSIT-SDHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFGNA------- 339 (497)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEec-CCcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEeccc-------
Confidence 6677888888775321 233345554 6899999999987777666543 346788999876555556552
Q ss_pred eEEEEEEecceecCCce--e--EEEEEecc--CCeEEeeEEEEeEEEeecCcc-------cEEEEcCCCCceeCEEEEeE
Q 042447 236 IVTKVVLDTAYLRETAN--G--LRIKTWQT--SAVKISQIMYRNISGTTKSSK-------AMKFACSDTVPCSDIVLSNV 302 (355)
Q Consensus 236 ~v~nV~i~n~~~~~~~~--g--i~Ik~~~~--~~~~i~nItf~NI~g~~~~~~-------~i~i~~~~~~~~~nI~~~nV 302 (355)
...|+||.+..... + -.| +.++ ....-..+.|.|++.+..+.. ..+ .|.+=.+-..+.|-+-
T Consensus 340 ---~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysr~vf~~s 414 (497)
T PLN02698 340 ---AAVFQNCYLFLRRPHGKSYNVI-LANGRSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSY-LGRPWKKYSRAIVMES 414 (497)
T ss_pred ---ceeecccEEEEecCCCCCceEE-EecCCCCCCCCceEEEEeeEEecCCccccccccccee-ccCCCCCCceEEEEec
Confidence 34788888753211 1 012 1111 111234677777776653210 122 2444445556666666
Q ss_pred EEEe
Q 042447 303 NLEK 306 (355)
Q Consensus 303 ~i~~ 306 (355)
.|..
T Consensus 415 ~l~~ 418 (497)
T PLN02698 415 YIDD 418 (497)
T ss_pred ccCC
Confidence 5544
No 84
>PLN02480 Probable pectinesterase
Probab=58.43 E-value=31 Score=33.76 Aligned_cols=109 Identities=8% Similarity=0.033 Sum_probs=57.3
Q ss_pred ccEEEEeeEEecC----------CceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCcee
Q 042447 185 TNVVLQDCKIGTG----------DDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANG 253 (355)
Q Consensus 185 ~nv~I~n~~i~~g----------DD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~g 253 (355)
++++++|++|.|. +-+|++...+..+.+.||.+.+-. =+--. . ..-.|+||+|++.-.=
T Consensus 132 ~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~-~---------gR~yf~~C~IeG~VDF 201 (343)
T PLN02480 132 PHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDY-K---------GRHYYHSCYIQGSIDF 201 (343)
T ss_pred CCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeC-C---------CCEEEEeCEEEeeeeE
Confidence 5666666666553 468888778899999999996532 22211 1 2347889998876211
Q ss_pred EEEEEeccCCeEEeeEEEEeEEEeecCc-ccEEEEcCCCCceeCEEEEeEEEEeC
Q 042447 254 LRIKTWQTSAVKISQIMYRNISGTTKSS-KAMKFACSDTVPCSDIVLSNVNLEKK 307 (355)
Q Consensus 254 i~Ik~~~~~~~~i~nItf~NI~g~~~~~-~~i~i~~~~~~~~~nI~~~nV~i~~~ 307 (355)
| +......++|.++.......... ..|.-.......-....|.|.+|...
T Consensus 202 --I--FG~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 202 --I--FGRGRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --E--ccceeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEccc
Confidence 0 11122345555444331100000 11222222112234678888888763
No 85
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=50.73 E-value=34 Score=34.37 Aligned_cols=85 Identities=11% Similarity=0.130 Sum_probs=31.4
Q ss_pred EEEEeeEEecCCceEEeecCCccEEEEeeEEcCC-----ceEEeccCCcccccceEEEEEEecceecCCceeEE-EEEec
Q 042447 187 VVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPG-----HGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLR-IKTWQ 260 (355)
Q Consensus 187 v~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~-----~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~-Ik~~~ 260 (355)
-+|++.+|+.....+++..|..+++-.|.+++.+ -||.|=.+ .-.|.|-+|+++.-.....++. +...+
T Consensus 225 N~ir~Ntf~es~G~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~-----~H~I~nNY~~gl~g~~~~~~~~v~ng~p 299 (425)
T PF14592_consen 225 NTIRNNTFRESQGSLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGE-----GHTIYNNYFEGLTGTRFRGALAVMNGVP 299 (425)
T ss_dssp -EEES-EEES-SSEEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SB-----S-EEES-EEEESSB-TTTTSEE-EEE--
T ss_pred ceEeccEEEeccceEEEecCCCceEeccEEecCCCcCCCCceEEecC-----CcEEEcceeeccccceeecceeeccCCC
Confidence 3445555555555555555555555555555322 15665322 2234555555554333344454 22222
Q ss_pred c----CCeEEeeEEEEeEEE
Q 042447 261 T----SAVKISQIMYRNISG 276 (355)
Q Consensus 261 ~----~~~~i~nItf~NI~g 276 (355)
. ..-.++|+++.|-+.
T Consensus 300 ~s~ln~y~qv~nv~I~~NT~ 319 (425)
T PF14592_consen 300 NSPLNRYDQVKNVLIANNTF 319 (425)
T ss_dssp BSTTSTT---BSEEEES-EE
T ss_pred CCCcccccccceeEEecceE
Confidence 1 122455555554443
No 86
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=49.70 E-value=22 Score=19.44 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=11.5
Q ss_pred ccEEEEeeEEecCC-ceEEee
Q 042447 185 TNVVLQDCKIGTGD-DCISIV 204 (355)
Q Consensus 185 ~nv~I~n~~i~~gD-D~I~ik 204 (355)
.+++|++|.|.... +||.+.
T Consensus 2 ~~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 2 SNVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CCEEEECCEEEeCCCCcEEEe
Confidence 45667777775433 366653
No 87
>PLN02773 pectinesterase
Probab=49.20 E-value=2.6e+02 Score=27.10 Aligned_cols=103 Identities=8% Similarity=0.082 Sum_probs=57.6
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEE
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKT 258 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~ 258 (355)
+++..+|++|.| ..-+++|...+..+.+.||.+.+.. =+.... ..-.|+||+|+++-.=|
T Consensus 102 ~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~----------gr~yf~~c~IeG~VDFI---- 167 (317)
T PLN02773 102 EDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY----------GKQYLRDCYIEGSVDFI---- 167 (317)
T ss_pred CCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC----------CCEEEEeeEEeecccEE----
Confidence 455555666654 2468888888899999999986532 233211 23578899988763211
Q ss_pred eccCCeEEeeEEEEeEEEeecCcccEEEEcCC---CCceeCEEEEeEEEEeCC
Q 042447 259 WQTSAVKISQIMYRNISGTTKSSKAMKFACSD---TVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 259 ~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~---~~~~~nI~~~nV~i~~~~ 308 (355)
+......+++.++. .... ..|.... ...-....|.|.+|+..+
T Consensus 168 FG~g~a~Fe~c~i~-----s~~~--g~ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 168 FGNSTALLEHCHIH-----CKSA--GFITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred eeccEEEEEeeEEE-----EccC--cEEECCCCCCCCCCceEEEEccEEecCC
Confidence 11222344444443 3222 2332211 112347889999988754
No 88
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=47.09 E-value=2.9e+02 Score=27.90 Aligned_cols=118 Identities=8% Similarity=0.141 Sum_probs=65.8
Q ss_pred cccEEEEeeEEecC---------CceEEeecCCccEEEEeeEEcCC-ceEEeccCCccc--ccceEEEEEEecceecCCc
Q 042447 184 STNVVLQDCKIGTG---------DDCISIVNGSSAIKMKRIFCGPG-HGISIGSLGKDN--SMGIVTKVVLDTAYLRETA 251 (355)
Q Consensus 184 s~nv~I~n~~i~~g---------DD~I~ik~g~~ni~i~n~~~~~~-~Gi~iGS~g~~~--~~~~v~nV~i~n~~~~~~~ 251 (355)
++++..+|++|.|. .-+++|......+.+.||.+.+. .=+-.++.+... .......-.|+||+|++.-
T Consensus 205 ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~V 284 (422)
T PRK10531 205 NNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDV 284 (422)
T ss_pred CCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeecc
Confidence 46677777777653 35888888889999999998653 234443221000 0011235689999998763
Q ss_pred eeEEEEEeccCCeEEeeEEEEeEEEeecCcccEEEEcC--CCCceeCEEEEeEEEEeC
Q 042447 252 NGLRIKTWQTSAVKISQIMYRNISGTTKSSKAMKFACS--DTVPCSDIVLSNVNLEKK 307 (355)
Q Consensus 252 ~gi~Ik~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~--~~~~~~nI~~~nV~i~~~ 307 (355)
.=| +......++|.+|...... ......|... ....-.++.|.|.+|+..
T Consensus 285 DFI----FG~g~AvFenC~I~s~~~~--~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 285 DFV----FGRGAVVFDNTEFRVVNSR--TQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred cEE----ccCceEEEEcCEEEEecCC--CCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 211 1123335666666554321 1122333322 223345789999999874
No 89
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=45.71 E-value=7.6 Score=35.57 Aligned_cols=30 Identities=13% Similarity=0.408 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHhhcCCCcEEEE--cCCeEE
Q 042447 54 SDDTQAFLNAWNTACSTPKSVFLV--PAGRHY 83 (355)
Q Consensus 54 tDdT~Aiq~Ai~~a~~~gg~~V~i--P~G~tY 83 (355)
--..+-|-+||+++++..+..|++ |.|+.|
T Consensus 61 vmk~epi~~Al~~~~~~~~~~vi~lsP~G~~f 92 (240)
T COG0336 61 VMKPEPLFDALDSVKAAKKAKVILLSPQGKPF 92 (240)
T ss_pred EeccHHHHHHHHHHHhccCCeEEEECCCCCcc
Confidence 344456999999877654455665 788744
No 90
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=41.51 E-value=3.6e+02 Score=28.35 Aligned_cols=110 Identities=9% Similarity=0.060 Sum_probs=59.9
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEE
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKT 258 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~ 258 (355)
+++..+|..|.| +.-++++...+....+.||.+.+-. =+...+. .-.++||+|+++-.=|
T Consensus 340 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~----------Rqyy~~C~I~GtVDFI---- 405 (566)
T PLN02713 340 QNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL----------RQFYRECDIYGTVDFI---- 405 (566)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC----------CEEEEeeEEeccccee----
Confidence 455555666654 3568999888999999999996533 2333221 2378899998762211
Q ss_pred eccCCeEEeeEEEEeEEEeecCcccEEEEcCC-CCceeCEEEEeEEEEeCC
Q 042447 259 WQTSAVKISQIMYRNISGTTKSSKAMKFACSD-TVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 259 ~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~-~~~~~nI~~~nV~i~~~~ 308 (355)
+......++|.++.-..........|.-++.. ...-.++.|.|.+|+..+
T Consensus 406 FG~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 456 (566)
T PLN02713 406 FGNAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAAD 456 (566)
T ss_pred cccceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCC
Confidence 01222344554443221100001123333321 233467888988888643
No 91
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=39.66 E-value=1.8e+02 Score=29.37 Aligned_cols=21 Identities=5% Similarity=0.109 Sum_probs=9.2
Q ss_pred EEEEEecceecCC-ceeEEEEE
Q 042447 238 TKVVLDTAYLRET-ANGLRIKT 258 (355)
Q Consensus 238 ~nV~i~n~~~~~~-~~gi~Ik~ 258 (355)
.|+.|+|++...+ ..|+.+..
T Consensus 264 YnLqF~d~~~i~~~~DG~Dl~a 285 (549)
T PF09251_consen 264 YNLQFRDSVTISPVWDGFDLGA 285 (549)
T ss_dssp BS-EEEEEEEES-SSESEEE-S
T ss_pred eeEEEeccceEEEeecceeccC
Confidence 3455666664433 34555543
No 92
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=38.72 E-value=4.7e+02 Score=27.18 Aligned_cols=111 Identities=7% Similarity=0.065 Sum_probs=59.7
Q ss_pred cccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEE
Q 042447 184 STNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 184 s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
+++...+|..|.| +.-++++...+....+.||.+.+-. =+...+ ..-.++||+|+++-.= |
T Consensus 292 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~----------~Rqyy~~C~I~GtVDF--I- 358 (520)
T PLN02201 292 GRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT----------MRQFYRECRITGTVDF--I- 358 (520)
T ss_pred CCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC----------CCEEEEeeEEeecccE--E-
Confidence 3566666666655 3467888888888999999886532 233322 1237788888776211 0
Q ss_pred EeccCCeEEeeEEEEeEEEeecCcccEEEEcC-CCCceeCEEEEeEEEEeCC
Q 042447 258 TWQTSAVKISQIMYRNISGTTKSSKAMKFACS-DTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 258 ~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~-~~~~~~nI~~~nV~i~~~~ 308 (355)
+......++|.++.-..........|.-++. +...-+++.|.|.+|+...
T Consensus 359 -FG~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~ 409 (520)
T PLN02201 359 -FGDATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADT 409 (520)
T ss_pred -ecCceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 1122234555544433211111122333332 2233457888888887643
No 93
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=38.59 E-value=3.6e+02 Score=25.74 Aligned_cols=110 Identities=6% Similarity=0.085 Sum_probs=54.2
Q ss_pred cccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCC-ceEEeccCCcccccceEEEEEEecceecCCceeEEEE
Q 042447 184 STNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPG-HGISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 184 s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~-~Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
++++..+|..|.| ..-+++|...+....+.||.+.+. .-+-..+ ....|+||++++.-.= |
T Consensus 86 a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~QDTL~~~~----------~r~y~~~c~IeG~vDF--I- 152 (298)
T PF01095_consen 86 ADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGYQDTLYANG----------GRQYFKNCYIEGNVDF--I- 152 (298)
T ss_dssp STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-STT-EEE-S----------SEEEEES-EEEESEEE--E-
T ss_pred ccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEccccceeeecc----------ceeEEEeeEEEecCcE--E-
Confidence 4666667776654 234677777778899999998653 3333321 1458899999876321 1
Q ss_pred EeccCCeEEeeEEEEeEEEeecCcccEEE--EcC-CCCceeCEEEEeEEEEeCCC
Q 042447 258 TWQTSAVKISQIMYRNISGTTKSSKAMKF--ACS-DTVPCSDIVLSNVNLEKKDG 309 (355)
Q Consensus 258 ~~~~~~~~i~nItf~NI~g~~~~~~~i~i--~~~-~~~~~~nI~~~nV~i~~~~g 309 (355)
|......+++.++....... .....| .+. +...-..+.|.|.+|+...+
T Consensus 153 -fG~~~a~f~~c~i~~~~~~~--~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~ 204 (298)
T PF01095_consen 153 -FGNGTAVFENCTIHSRRPGG--GQGGYITAQGRTSPSQKSGFVFDNCTITGDSG 204 (298)
T ss_dssp -EESSEEEEES-EEEE--SST--SSTEEEEEE---CTTSS-EEEEES-EEEESTT
T ss_pred -ECCeeEEeeeeEEEEecccc--ccceeEEeCCccccCCCeEEEEEEeEEecCcc
Confidence 11233456666665533211 122233 222 12334578999999998644
No 94
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=36.45 E-value=4.7e+02 Score=27.28 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=37.2
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCC
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRET 250 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~ 250 (355)
++...+|..|.| +.-++++...+....+.||.+.+-. =+...+. .-.++||+|+++
T Consensus 313 ~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~----------rq~y~~c~I~Gt 374 (538)
T PLN03043 313 ERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL----------RQFYRECDIYGT 374 (538)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC----------cEEEEeeEEeec
Confidence 445555555654 3578999888899999999986532 2333221 237888888776
No 95
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=34.20 E-value=5.4e+02 Score=26.81 Aligned_cols=110 Identities=10% Similarity=0.066 Sum_probs=58.5
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEE
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKT 258 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~ 258 (355)
++...+|..|.| +.-++++...+....+.||.+.+-. =+...+ ..-.+++|+|+++-.=|
T Consensus 305 ~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~----------~Rqyy~~C~IeGtVDFI---- 370 (530)
T PLN02933 305 KGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS----------AKQFYRECDIYGTIDFI---- 370 (530)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC----------CceEEEeeEEeccccee----
Confidence 555666666654 3468999888899999999986532 122211 12388899988762110
Q ss_pred eccCCeEEeeEEEEeEEEeecCcccEEEEcC-CCCceeCEEEEeEEEEeCC
Q 042447 259 WQTSAVKISQIMYRNISGTTKSSKAMKFACS-DTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 259 ~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~-~~~~~~nI~~~nV~i~~~~ 308 (355)
+......++|.++.-..........|.-++. +...-+++.|.|.+|....
T Consensus 371 FG~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~ 421 (530)
T PLN02933 371 FGNAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAP 421 (530)
T ss_pred ccCceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 0112234444444322110000112222332 1223457888888888743
No 96
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=33.03 E-value=5.5e+02 Score=26.50 Aligned_cols=111 Identities=11% Similarity=0.057 Sum_probs=60.6
Q ss_pred cccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEE
Q 042447 184 STNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 184 s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
.++...+|+.|.| ++-++++...+....+.||.+.+-. =+...+. .-.|++|+|+++-.=|.
T Consensus 269 ~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~----------rqyy~~C~I~G~vDFIF-- 336 (497)
T PLN02698 269 GDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL----------RQFYRECDIYGTIDFIF-- 336 (497)
T ss_pred CCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC----------cEEEEeeEEEeccceEe--
Confidence 3566666666654 3568999888999999999886532 2333221 23788899887632111
Q ss_pred EeccCCeEEeeEEEEeEEEeecCcccEEEEcC-CCCceeCEEEEeEEEEeCC
Q 042447 258 TWQTSAVKISQIMYRNISGTTKSSKAMKFACS-DTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 258 ~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~-~~~~~~nI~~~nV~i~~~~ 308 (355)
......++|.++............|.-++. +...-+++.|.|.+|+..+
T Consensus 337 --G~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 337 --GNAAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred --cccceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 122234555544322110000111222332 1233468899999998754
No 97
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=32.28 E-value=5.6e+02 Score=26.85 Aligned_cols=111 Identities=9% Similarity=0.093 Sum_probs=59.6
Q ss_pred cccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEE
Q 042447 184 STNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 184 s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
.++...+|..|.| +.-++++...+....+.||.+.+-. =+...+ ..-.++||+|+++-.=|
T Consensus 322 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFI--- 388 (548)
T PLN02301 322 GDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS----------LRQFYRDSYITGTVDFI--- 388 (548)
T ss_pred CCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC----------CcEEEEeeEEEecccee---
Confidence 3556666666654 3577899888899999999986532 233322 12378888888762110
Q ss_pred EeccCCeEEeeEEEEeEEEeecCcccEEEEcC-CCCceeCEEEEeEEEEeCC
Q 042447 258 TWQTSAVKISQIMYRNISGTTKSSKAMKFACS-DTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 258 ~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~-~~~~~~nI~~~nV~i~~~~ 308 (355)
+......++|.++.-..........|.-++. +...-.++.|.|.+|...+
T Consensus 389 -FG~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 389 -FGNAAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASS 439 (548)
T ss_pred -cccceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCc
Confidence 0012234444444332110001122333332 1233457888988888653
No 98
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=32.19 E-value=3.2e+02 Score=26.82 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=21.6
Q ss_pred eeeecCcccEEEEeeEEecCCceEEeecCCccEEEEeeEEcC--CceEEe
Q 042447 178 GIHITESTNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGP--GHGISI 225 (355)
Q Consensus 178 Gi~~~~s~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~--~~Gi~i 225 (355)
|.+...+.+..|++...+..--+++| --++.++|.++...+ .|||-+
T Consensus 196 gvHyM~t~~s~i~dn~s~~N~vG~AL-Mys~~l~V~~nrS~Gnrd~Gill 244 (408)
T COG3420 196 GVHYMYTNDSRISDNSSRDNRVGYAL-MYSDRLKVSDNRSSGNRDHGILL 244 (408)
T ss_pred eEEEEeccCcEeecccccCCcceEEE-EEeccEEEEcCcccCccccceee
Confidence 33333344444444444333344444 224566666665543 345544
No 99
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=31.34 E-value=4.2e+02 Score=28.50 Aligned_cols=110 Identities=7% Similarity=-0.001 Sum_probs=59.1
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEE
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKT 258 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~ 258 (355)
.+...+|..|.| +.-++++...+....+.||.+.+-. =+...+ ..-.|++|+|+++-.=|
T Consensus 337 ~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFI---- 402 (670)
T PLN02217 337 DHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS----------HRQFYRDCTISGTIDFL---- 402 (670)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC----------CcEEEEeCEEEEeccEE----
Confidence 555666666654 3578999888899999999886432 122211 23478899987762111
Q ss_pred eccCCeEEeeEEEEeEEEeecCcccEEEEcCC-CCceeCEEEEeEEEEeCC
Q 042447 259 WQTSAVKISQIMYRNISGTTKSSKAMKFACSD-TVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 259 ~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~-~~~~~nI~~~nV~i~~~~ 308 (355)
+......++|.++............|.-++.. ...-.++.|.|.+|....
T Consensus 403 FG~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 403 FGDAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred ecCceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCc
Confidence 01122344444443221100001122323321 233468999999998753
No 100
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=31.23 E-value=5.1e+02 Score=27.38 Aligned_cols=57 Identities=9% Similarity=0.057 Sum_probs=37.4
Q ss_pred cccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCC
Q 042447 184 STNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRET 250 (355)
Q Consensus 184 s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~ 250 (355)
.++...+|..|.| ++-++++...+....+.||.+.+-. =+...+ ..-.+++|++.++
T Consensus 361 ~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~----------~rq~y~~c~I~Gt 423 (587)
T PLN02313 361 GERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS----------NRQFFVKCHITGT 423 (587)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC----------CcEEEEeeEEeec
Confidence 3566666666655 3568888888889999999886432 232222 1237888888776
No 101
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=30.50 E-value=5.8e+02 Score=26.81 Aligned_cols=110 Identities=8% Similarity=0.060 Sum_probs=58.6
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEE
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKT 258 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~ 258 (355)
+++..+|..|.| +.-++++...+....+.||.+.+-. =+...+ ..-.++||+|+++-.=|
T Consensus 345 ~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~----------~rq~y~~C~I~GtvDFI---- 410 (565)
T PLN02468 345 KGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA----------QRQFYRECNIYGTVDFI---- 410 (565)
T ss_pred CCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC----------CceEEEeeEEeccccee----
Confidence 444555555543 4578999888999999999985422 122211 12378999998762211
Q ss_pred eccCCeEEeeEEEEeEEEeecCcccEEEEcC-CCCceeCEEEEeEEEEeCC
Q 042447 259 WQTSAVKISQIMYRNISGTTKSSKAMKFACS-DTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 259 ~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~-~~~~~~nI~~~nV~i~~~~ 308 (355)
+......++|.++.-..........|.-++. +...-+++.|.|.+|+..+
T Consensus 411 FG~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 411 FGNSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred eccceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCC
Confidence 1122234444444322110000112333332 2234567889999888643
No 102
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=30.37 E-value=6.4e+02 Score=26.43 Aligned_cols=110 Identities=9% Similarity=0.088 Sum_probs=58.5
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEE
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKT 258 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~ 258 (355)
+++..+|..|.| +.-++++...+..+.+.||.+.+-. =+...+ ..-.+++|+|+++-.=|
T Consensus 330 ~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~----------~rq~y~~C~I~GtVDFI---- 395 (553)
T PLN02708 330 DGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS----------LRQFYKSCRIQGNVDFI---- 395 (553)
T ss_pred CCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC----------CceEEEeeEEeecCCEE----
Confidence 344555555544 3568999888999999999986532 232221 12378999998763211
Q ss_pred eccCCeEEeeEEEEeEEEeec----CcccEEEEcCC-CCceeCEEEEeEEEEeCC
Q 042447 259 WQTSAVKISQIMYRNISGTTK----SSKAMKFACSD-TVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 259 ~~~~~~~i~nItf~NI~g~~~----~~~~i~i~~~~-~~~~~nI~~~nV~i~~~~ 308 (355)
+......++|.++.-...... ....|.-++.. ...-.++.|.|.+|+..+
T Consensus 396 FG~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~~ 450 (553)
T PLN02708 396 FGNSAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTE 450 (553)
T ss_pred ecCceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecCC
Confidence 111223344443331100000 01223333322 233468999999998754
No 103
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=30.03 E-value=1.6e+02 Score=24.10 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=23.0
Q ss_pred CCcEEEEcCCeEEEEeeeeeeccccccEEEEEceEEeecCC
Q 042447 71 PKSVFLVPAGRHYLVSATRFKGPCADKLVIQIDGTIVAPAE 111 (355)
Q Consensus 71 gg~~V~iP~G~tY~i~~~~l~~p~~~~~~l~~~g~l~~~~~ 111 (355)
.+..|+||+|.+.++..- .|. --.|.++|+|.+.++
T Consensus 11 ~g~~V~I~~g~~v~lD~~---~~~--l~~l~I~G~L~f~~~ 46 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVS---TPK--LGSLIIGGTLIFDDD 46 (125)
T ss_pred CCCEEEECCCCEEEEcCC---Chh--eeEEEEEEEEEEccC
Confidence 378999999975555431 111 123445999998775
No 104
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=29.14 E-value=7e+02 Score=26.41 Aligned_cols=111 Identities=9% Similarity=0.046 Sum_probs=59.5
Q ss_pred cccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEE
Q 042447 184 STNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 184 s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
++++..+|..|.| +.-++++...+....+.||.+.+-. =+...+ ..-.|+||+|+++-.= |-
T Consensus 371 ~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDF--IF 438 (596)
T PLN02745 371 GEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT----------HRQFYRSCVITGTIDF--IF 438 (596)
T ss_pred cCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC----------CcEEEEeeEEEeeccE--Ee
Confidence 3566666666665 3467999888899999999986532 122211 1347889998876321 11
Q ss_pred EeccCCeEEeeEEEEeEEEeecCcccEEEEcC-CCCceeCEEEEeEEEEeCC
Q 042447 258 TWQTSAVKISQIMYRNISGTTKSSKAMKFACS-DTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 258 ~~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~-~~~~~~nI~~~nV~i~~~~ 308 (355)
......++|.++.-..........|.-++. +...-.++.|.|.+|+...
T Consensus 439 --G~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 439 --GDAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred --cceeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCc
Confidence 012223444433321100000112223332 2233468999999998754
No 105
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=27.68 E-value=6.6e+02 Score=26.54 Aligned_cols=109 Identities=8% Similarity=0.078 Sum_probs=58.9
Q ss_pred cccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEE
Q 042447 184 STNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 184 s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
.++...+|+.|.| +.-++++...+....+.||.+.+-. =+...+ ..-.|+||+|+++-.=|
T Consensus 359 ~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFI--- 425 (587)
T PLN02484 359 GAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS----------NRQFFRECDIYGTVDFI--- 425 (587)
T ss_pred cCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC----------CcEEEEecEEEecccee---
Confidence 3566666666655 3468888888888999999886532 222211 12378889888762110
Q ss_pred EeccCCeEEeeEEEEeEEEeecCcccEEEE--cC-CCCceeCEEEEeEEEEeCC
Q 042447 258 TWQTSAVKISQIMYRNISGTTKSSKAMKFA--CS-DTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 258 ~~~~~~~~i~nItf~NI~g~~~~~~~i~i~--~~-~~~~~~nI~~~nV~i~~~~ 308 (355)
+......++|.++.-.... ......|. +. +...-+++.|.|.+|+..+
T Consensus 426 -FG~a~avfq~C~i~~~~~~--~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 426 -FGNAAVVLQNCSIYARKPM--AQQKNTITAQNRKDPNQNTGISIHACRILAAS 476 (587)
T ss_pred -cccceeEEeccEEEEecCC--CCCceEEEecCCCCCCCCcEEEEEeeEEecCC
Confidence 0012234444444322110 01112332 22 2233468999999997643
No 106
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=27.62 E-value=15 Score=32.04 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=27.4
Q ss_pred HHhhhcccccccccceeccCCCcccccCCCceEEEeeecCC
Q 042447 8 LLGELENLNVEEENEVELFEEPSWTSERGGKVLVNVDSFGA 48 (355)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~dyGA 48 (355)
+++--+.|..+++..+.++..++-+.|+ +|-|.|||=
T Consensus 33 iv~~~eAL~lA~e~~LDLV~Ispna~PP----VcKImDYGK 69 (176)
T COG0290 33 IVSIEEALKLAEEAGLDLVEISPNAKPP----VCKIMDYGK 69 (176)
T ss_pred ceeHHHHHHHHHHcCCCEEEECCCCCCC----eeEeeeccc
Confidence 4444566777888888888888666554 899999983
No 107
>PLN02314 pectinesterase
Probab=27.48 E-value=6.4e+02 Score=26.65 Aligned_cols=110 Identities=7% Similarity=0.040 Sum_probs=57.6
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEE
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKT 258 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~ 258 (355)
++...+|..|.| +.-++++..++....+.||.+.+-. =+...+ ..-.++||+|+++-.=|
T Consensus 365 ~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~----------~rq~y~~C~I~GtvDFI---- 430 (586)
T PLN02314 365 KGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS----------NRQFYRDCDITGTIDFI---- 430 (586)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC----------CCEEEEeeEEEecccee----
Confidence 334444445543 3568999888999999999986532 232211 12378899998762211
Q ss_pred eccCCeEEeeEEEEeEEEeecCcccEEEEcCC-CCceeCEEEEeEEEEeCC
Q 042447 259 WQTSAVKISQIMYRNISGTTKSSKAMKFACSD-TVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 259 ~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~~-~~~~~nI~~~nV~i~~~~ 308 (355)
+......++|.++.-..........|.-++.. ...-+++.|.|.+|+..+
T Consensus 431 FG~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 431 FGNAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ccCceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 00122344444442211000001122223321 234468899999988754
No 108
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=26.76 E-value=7.2e+02 Score=25.97 Aligned_cols=109 Identities=8% Similarity=0.081 Sum_probs=58.5
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEE
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKT 258 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~ 258 (355)
.+...+|..|.| +.-++++...+....+.||.+.+-. =+...+ ..-.++||+|+++-.=|
T Consensus 312 ~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFI---- 377 (539)
T PLN02995 312 LHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS----------QRQFYRECYIYGTVDFI---- 377 (539)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC----------CceEEEeeEEeeccceE----
Confidence 455555555544 3578999888899999999886432 122211 12378899988762211
Q ss_pred eccCCeEEeeEEEEeEEEeecCcccEEEE--cC-CCCceeCEEEEeEEEEeCCC
Q 042447 259 WQTSAVKISQIMYRNISGTTKSSKAMKFA--CS-DTVPCSDIVLSNVNLEKKDG 309 (355)
Q Consensus 259 ~~~~~~~i~nItf~NI~g~~~~~~~i~i~--~~-~~~~~~nI~~~nV~i~~~~g 309 (355)
+......++|.++.-.... ......|. +. +...-.++.|.|.+|+...+
T Consensus 378 FG~a~avf~~C~i~~~~~~--~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~ 429 (539)
T PLN02995 378 FGNAAAVFQNCIILPRRPL--KGQANVITAQGRADPFQNTGISIHNSRILPAPD 429 (539)
T ss_pred ecccceEEeccEEEEecCC--CCCcceEecCCCCCCCCCceEEEEeeEEecCCc
Confidence 1122234555444332110 01122332 21 12234688899998887543
No 109
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=26.05 E-value=7.9e+02 Score=25.88 Aligned_cols=109 Identities=7% Similarity=0.087 Sum_probs=58.8
Q ss_pred cccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCce-EEeccCCcccccceEEEEEEecceecCCceeEEEE
Q 042447 184 STNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGHG-ISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIK 257 (355)
Q Consensus 184 s~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~G-i~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik 257 (355)
.++...+|..|.| +.-++++...+....+.||.+.+..- +...+ ..-.|++|+|+++-.=|
T Consensus 346 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~----------~Rqyy~~C~I~GtVDFI--- 412 (572)
T PLN02990 346 GDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS----------HRQFFRDCTVSGTVDFI--- 412 (572)
T ss_pred cCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC----------CcEEEEeeEEecccceE---
Confidence 3556666666654 35688888888889999998865321 22211 12478889988763211
Q ss_pred EeccCCeEEeeEEEEeEEEeecCcccEEEE--cCC-CCceeCEEEEeEEEEeCC
Q 042447 258 TWQTSAVKISQIMYRNISGTTKSSKAMKFA--CSD-TVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 258 ~~~~~~~~i~nItf~NI~g~~~~~~~i~i~--~~~-~~~~~nI~~~nV~i~~~~ 308 (355)
+......++|.++.-.... . .....|. +.. ...-+++.|.|.+|+...
T Consensus 413 -FG~a~avf~~C~i~~~~~~-~-~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 413 -FGDAKVVLQNCNIVVRKPM-K-GQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred -ccCceEEEEccEEEEecCC-C-CCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 0112234455444322110 0 1112332 221 123457889999888754
No 110
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=25.93 E-value=6.6e+02 Score=26.25 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=36.3
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCC
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRET 250 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~ 250 (355)
+++..+|..|.| +.-++++...+....+.||.+.+-. =+...+ ..-.++||+|+++
T Consensus 317 ~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~----------~Rqyy~~C~I~Gt 378 (541)
T PLN02416 317 EGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS----------FRQFYRECDIYGT 378 (541)
T ss_pred CCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC----------CceEEEeeEEeec
Confidence 344444555543 4678999888899999999986532 232222 1337888888875
No 111
>PLN02432 putative pectinesterase
Probab=25.34 E-value=2e+02 Score=27.47 Aligned_cols=106 Identities=7% Similarity=0.029 Sum_probs=57.1
Q ss_pred ccEEEEeeEEec----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEEe
Q 042447 185 TNVVLQDCKIGT----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTW 259 (355)
Q Consensus 185 ~nv~I~n~~i~~----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~ 259 (355)
+++..+|..|.| +.-+++|...+....+.||.+.+-. -+-... ..-.|+||+|+++-.=| +
T Consensus 94 ~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~----------gr~yf~~c~I~G~VDFI----F 159 (293)
T PLN02432 94 SDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT----------GRHYYRNCYIEGATDFI----C 159 (293)
T ss_pred CCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEECC----------CCEEEEeCEEEecccEE----e
Confidence 344445555543 3578888888899999999986533 232211 13488999988763211 1
Q ss_pred ccCCeEEeeEEEEeEEEeecCcccEEEEcC-CCCceeCEEEEeEEEEeC
Q 042447 260 QTSAVKISQIMYRNISGTTKSSKAMKFACS-DTVPCSDIVLSNVNLEKK 307 (355)
Q Consensus 260 ~~~~~~i~nItf~NI~g~~~~~~~i~i~~~-~~~~~~nI~~~nV~i~~~ 307 (355)
......+++.++..... ....|.-... ....-....|.|.+|+..
T Consensus 160 G~g~a~Fe~c~i~s~~~---~~g~itA~~r~~~~~~~Gfvf~~c~itg~ 205 (293)
T PLN02432 160 GNAASLFEKCHLHSLSP---NNGAITAQQRTSASENTGFTFLGCKLTGA 205 (293)
T ss_pred cCceEEEEeeEEEEecC---CCCeEEecCCCCCCCCceEEEEeeEEccc
Confidence 12223455555543211 0111222221 112234788999998853
No 112
>PLN02916 pectinesterase family protein
Probab=25.14 E-value=7.8e+02 Score=25.48 Aligned_cols=108 Identities=8% Similarity=0.033 Sum_probs=57.1
Q ss_pred ccEEEEeeEEecCCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEEeccCC
Q 042447 185 TNVVLQDCKIGTGDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSA 263 (355)
Q Consensus 185 ~nv~I~n~~i~~gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~~~ 263 (355)
+|++|+|..=..+.-++++...+....+.||.+.+-. =+...+. .-.++||+|+++-.=| +....
T Consensus 282 ~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~----------Rqyy~~C~I~GtVDFI----FG~a~ 347 (502)
T PLN02916 282 RDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL----------RQFYRDCHIYGTIDFI----FGDAA 347 (502)
T ss_pred EeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC----------CEEEEecEEeccccee----ccCce
Confidence 3444444322224578999888899999999986532 2333221 2378999998762210 11122
Q ss_pred eEEeeEEEEeEEEeecCcccEEEE--cC-CCCceeCEEEEeEEEEeCC
Q 042447 264 VKISQIMYRNISGTTKSSKAMKFA--CS-DTVPCSDIVLSNVNLEKKD 308 (355)
Q Consensus 264 ~~i~nItf~NI~g~~~~~~~i~i~--~~-~~~~~~nI~~~nV~i~~~~ 308 (355)
..++|.++.-.... ......|. +. +...-+++.|.|.+|+...
T Consensus 348 avFq~C~I~~~~~~--~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 348 VVFQNCDIFVRRPM--DHQGNMITAQGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred EEEecCEEEEecCC--CCCcceEEecCCCCCCCCcEEEEEeeEEecCc
Confidence 34444444322110 00112332 22 1233468889999988754
No 113
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=23.85 E-value=7.4e+02 Score=25.87 Aligned_cols=109 Identities=6% Similarity=0.007 Sum_probs=57.0
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEE
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKT 258 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~ 258 (355)
++...+|..|.| +.-++++...+....+.||.+.+.. =+...+ ..-.++||+|+++-.= |
T Consensus 319 ~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~----------~rqyy~~C~I~GtVDF--I-- 384 (537)
T PLN02506 319 RGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS----------LRQFYRECEIYGTIDF--I-- 384 (537)
T ss_pred CCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC----------CceEEEeeEEecccce--E--
Confidence 444455555544 3578999888999999999986532 232222 1247889998876221 0
Q ss_pred eccCCeEEeeEEEEeEEEeecCcccEEEEcC-CCCceeCEEEEeEEEEeC
Q 042447 259 WQTSAVKISQIMYRNISGTTKSSKAMKFACS-DTVPCSDIVLSNVNLEKK 307 (355)
Q Consensus 259 ~~~~~~~i~nItf~NI~g~~~~~~~i~i~~~-~~~~~~nI~~~nV~i~~~ 307 (355)
+......++|.++............|.-++. +...-.++.|.|.+|+..
T Consensus 385 FG~a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 385 FGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred ccCceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 0112234444444332110000111222222 112345788888888763
No 114
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=22.70 E-value=71 Score=30.12 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=24.3
Q ss_pred EEEeeecCCCCCCCcchHHHHHHHHHHhhcCCCcEEEEcCCe
Q 042447 40 LVNVDSFGAAGDGVSDDTQAFLNAWNTACSTPKSVFLVPAGR 81 (355)
Q Consensus 40 ~~nV~dyGA~gDG~tDdT~Aiq~Ai~~a~~~gg~~V~iP~G~ 81 (355)
.+=|.+-||=.|. ++.+.+.++|.++|++||+|+|-
T Consensus 88 dlvv~SvGALaD~------~~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 88 DMIICSAGALADD------ALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred CEEEEChhHhcCH------HHHHHHHHHHHhCCCEEEEeChH
Confidence 3445666765542 35555555666678999999997
No 115
>PLN02197 pectinesterase
Probab=22.10 E-value=8e+02 Score=25.98 Aligned_cols=56 Identities=5% Similarity=0.014 Sum_probs=36.9
Q ss_pred ccEEEEeeEEec-----CCceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCC
Q 042447 185 TNVVLQDCKIGT-----GDDCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRET 250 (355)
Q Consensus 185 ~nv~I~n~~i~~-----gDD~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~ 250 (355)
++...+|..|.| ++-++++...+....+.||.+.+-. =+...+ ..-.|+||+|+++
T Consensus 364 ~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~----------~Rqyy~~C~I~Gt 425 (588)
T PLN02197 364 EGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN----------GRQFYRNIVVSGT 425 (588)
T ss_pred CcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC----------CCEEEEeeEEEec
Confidence 344444444443 5679999989999999999986532 233222 1237889998876
No 116
>PLN02497 probable pectinesterase
Probab=20.49 E-value=2.8e+02 Score=27.04 Aligned_cols=95 Identities=6% Similarity=0.023 Sum_probs=50.4
Q ss_pred ceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEEeccCCeEEeeEEEEeEEEe
Q 042447 199 DCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGT 277 (355)
Q Consensus 199 D~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~~~~~i~nItf~NI~g~ 277 (355)
-++++....+...+.||.+.+.. =+-. .. ..-.++||+++++-.=| +......++|.++......
T Consensus 141 QAVAl~v~gDr~~fy~C~f~G~QDTLy~-~~---------gRqyf~~C~IeG~VDFI----FG~g~a~Fe~C~I~s~~~~ 206 (331)
T PLN02497 141 PAVAAMIGGDKSAFYSCGFAGVQDTLWD-SD---------GRHYFKRCTIQGAVDFI----FGSGQSIYESCVIQVLGGQ 206 (331)
T ss_pred ceEEEEecCCcEEEEeeEEeccccceee-CC---------CcEEEEeCEEEecccEE----ccCceEEEEccEEEEecCc
Confidence 48888888899999999986532 2221 11 13478899988762210 1122234555555443210
Q ss_pred ecCcccEEEEcC---CCCceeCEEEEeEEEEeC
Q 042447 278 TKSSKAMKFACS---DTVPCSDIVLSNVNLEKK 307 (355)
Q Consensus 278 ~~~~~~i~i~~~---~~~~~~nI~~~nV~i~~~ 307 (355)
........|... ....-....|.|.+|+..
T Consensus 207 ~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 207 LEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred CCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 001111233221 122335788888888763
No 117
>PLN02682 pectinesterase family protein
Probab=20.35 E-value=2.9e+02 Score=27.37 Aligned_cols=92 Identities=4% Similarity=0.026 Sum_probs=49.9
Q ss_pred ceEEeecCCccEEEEeeEEcCCc-eEEeccCCcccccceEEEEEEecceecCCceeEEEEEeccCCeEEeeEEEEeEEEe
Q 042447 199 DCISIVNGSSAIKMKRIFCGPGH-GISIGSLGKDNSMGIVTKVVLDTAYLRETANGLRIKTWQTSAVKISQIMYRNISGT 277 (355)
Q Consensus 199 D~I~ik~g~~ni~i~n~~~~~~~-Gi~iGS~g~~~~~~~v~nV~i~n~~~~~~~~gi~Ik~~~~~~~~i~nItf~NI~g~ 277 (355)
-++++...++...+.||.+.+.. =+-.. ...-.++||+|+++-.=| +......+++.++..+..
T Consensus 187 QAVAL~v~gDr~~fy~C~f~G~QDTLy~~----------~gRqyf~~C~IeG~VDFI----FG~g~a~Fe~C~I~s~~~- 251 (369)
T PLN02682 187 QAVALRISADTAAFYGCKFLGAQDTLYDH----------LGRHYFKDCYIEGSVDFI----FGNGLSLYEGCHLHAIAR- 251 (369)
T ss_pred cEEEEEecCCcEEEEcceEeccccceEEC----------CCCEEEEeeEEcccccEE----ecCceEEEEccEEEEecC-
Confidence 48899888899999999986532 22211 123488999998863211 112233455555543311
Q ss_pred ecCcccEEEEcC-CCCceeCEEEEeEEEEeC
Q 042447 278 TKSSKAMKFACS-DTVPCSDIVLSNVNLEKK 307 (355)
Q Consensus 278 ~~~~~~i~i~~~-~~~~~~nI~~~nV~i~~~ 307 (355)
....|.-+.. ....-.+..|.|.+|+..
T Consensus 252 --~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 252 --NFGALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred --CCeEEecCCCCCCCCCceEEEEeeEecCC
Confidence 0111222221 112235788888888763
Done!