AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>042449
MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRLVANDSISTS
VHSTCRVSHARLVHMNRGPQLLTIFFGSPS
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with GEA6 GEA6 GEA6 AT2G40170	protein from Arabidopsis thaliana	2.8e-11
BLAST match view associations BLAST with EM1 EM1 EM1 AT3G51810	protein from Arabidopsis thaliana	3.5e-11
BLAST match view associations BLAST with EMP1 EMP1 EMP1 Embryonic abundant protein 1	protein from Oryza sativa Japonica Group	9.4e-11
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042449
        (90 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2065041 - symbol:GEA6 "AT2G40170" species:3702...   155  2.8e-11   1
TAIR|locus:2074383 - symbol:EM1 "AT3G51810" species:3702 ...   154  3.5e-11   1
UNIPROTKB|P46520 - symbol:EMP1 "Embryonic abundant protei...   150  9.4e-11   1


>TAIR|locus:2065041 [details] [associations]
            symbol:GEA6 "AT2G40170" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0048316 "seed development"
            evidence=IMP] [GO:0048700 "acquisition of desiccation tolerance in
            seed" evidence=IMP] [GO:0009640 "photomorphogenesis" evidence=RCA]
            [GO:0009737 "response to abscisic acid stimulus" evidence=RCA;TAS]
            [GO:0009793 "embryo development ending in seed dormancy"
            evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
            [GO:0009909 "regulation of flower development" evidence=RCA]
            [GO:0009933 "meristem structural organization" evidence=RCA]
            [GO:0010162 "seed dormancy process" evidence=RCA] [GO:0010182
            "sugar mediated signaling pathway" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016114 "terpenoid biosynthetic process"
            evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
            [GO:0019915 "lipid storage" evidence=RCA] [GO:0050826 "response to
            freezing" evidence=RCA] GO:GO:0009737 EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AF085279 HOGENOM:HOG000201826
            InterPro:IPR022377 InterPro:IPR000389 Pfam:PF00477 PROSITE:PS00431
            EMBL:Z11923 EMBL:Z11924 EMBL:X66023 EMBL:AF360157 EMBL:AY113885
            IPI:IPI00548376 PIR:S34802 RefSeq:NP_181546.1 UniGene:At.25587
            STRING:Q02973 PaxDb:Q02973 PRIDE:Q02973 ProMEX:Q02973
            EnsemblPlants:AT2G40170.1 GeneID:818608 KEGG:ath:AT2G40170
            TAIR:At2g40170 eggNOG:NOG319720 InParanoid:Q02973 OMA:GKSFEAQ
            PhylomeDB:Q02973 ProtClustDB:CLSN2913055 Genevestigator:Q02973
            GermOnline:AT2G40170 GO:GO:0048700 Uniprot:Q02973
        Length = 92

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/41 (73%), Positives = 36/41 (87%)

Query:     1 MASQQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
             MASQQ +++LD R ++GETVVPGGTGGKS EAQ+HLAEG S
Sbjct:     1 MASQQEKKQLDERAKKGETVVPGGTGGKSFEAQQHLAEGRS 41


>TAIR|locus:2074383 [details] [associations]
            symbol:EM1 "AT3G51810" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0009793 "embryo development ending in
            seed dormancy" evidence=RCA;TAS] [GO:0009640 "photomorphogenesis"
            evidence=RCA] [GO:0009737 "response to abscisic acid stimulus"
            evidence=RCA;TAS] [GO:0009845 "seed germination" evidence=RCA]
            [GO:0009909 "regulation of flower development" evidence=RCA]
            [GO:0009933 "meristem structural organization" evidence=RCA]
            [GO:0010162 "seed dormancy process" evidence=RCA] [GO:0010182
            "sugar mediated signaling pathway" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
            [GO:0019915 "lipid storage" evidence=RCA] [GO:0048825 "cotyledon
            development" evidence=RCA] [GO:0050826 "response to freezing"
            evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
            GO:GO:0009737 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AF049236
            EMBL:Z11158 EMBL:Z11921 EMBL:BT004105 EMBL:BT005464 IPI:IPI00526670
            PIR:S34819 RefSeq:NP_190749.1 UniGene:At.35352 STRING:Q07187
            PaxDb:Q07187 PRIDE:Q07187 ProMEX:Q07187 EnsemblPlants:AT3G51810.1
            GeneID:824344 KEGG:ath:AT3G51810 TAIR:At3g51810 eggNOG:COG3729
            HOGENOM:HOG000201826 InParanoid:Q07187 OMA:SEQLGHE PhylomeDB:Q07187
            ProtClustDB:CLSN2683393 Genevestigator:Q07187 GermOnline:AT3G51810
            InterPro:IPR022377 InterPro:IPR000389 Pfam:PF00477 PROSITE:PS00431
            Uniprot:Q07187
        Length = 152

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 37/75 (49%), Positives = 45/75 (60%)

Query:     1 MASQQ-GRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFSGKNHVVAKRLVANDSIST 59
             MAS+Q  R+ELD + +QGETVVPGGTGG SLEAQEHLAEG S K     K  + ++    
Sbjct:     1 MASKQLSREELDEKAKQGETVVPGGTGGHSLEAQEHLAEGRS-KGGQTRKEQLGHEGYQE 59

Query:    60 SVHSTCRVSHARLVH 74
               H        +L H
Sbjct:    60 IGHKGGEARKEQLGH 74


>UNIPROTKB|P46520 [details] [associations]
            symbol:EMP1 "Embryonic abundant protein 1" species:39947
            "Oryza sativa Japonica Group" [GO:0009737 "response to abscisic
            acid stimulus" evidence=IEP] GO:GO:0009737 EMBL:AC136221
            HOGENOM:HOG000201826 InterPro:IPR022377 InterPro:IPR000389
            Pfam:PF00477 PROSITE:PS00431 eggNOG:NOG319720 GO:GO:0048700
            EMBL:X63126 EMBL:U22102 PIR:S22483 RefSeq:NP_001055273.1
            UniGene:Os.12812 STRING:P46520 PRIDE:P46520
            EnsemblPlants:LOC_Os05g28210.1 GeneID:4338499
            KEGG:dosa:Os05t0349800-01 KEGG:osa:4338499 Gramene:P46520
            OMA:DIDESKY Uniprot:P46520
        Length = 95

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/38 (78%), Positives = 33/38 (86%)

Query:     4 QQGRQELDTRPRQGETVVPGGTGGKSLEAQEHLAEGFS 41
             QQGR ELD   R+G+TVVPGGTGGKSLEAQE+LAEG S
Sbjct:     7 QQGRSELDRMAREGQTVVPGGTGGKSLEAQENLAEGRS 44


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        90   0.00091  102 3  11 23  0.36    30
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  497 (53 KB)
  Total size of DFA:  94 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.61u 0.11s 9.72t   Elapsed:  00:00:00
  Total cpu time:  9.61u 0.11s 9.72t   Elapsed:  00:00:00
  Start:  Fri May 10 08:51:40 2013   End:  Fri May 10 08:51:40 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
