Query 042449
Match_columns 90
No_of_seqs 38 out of 40
Neff 1.5
Searched_HMMs 29240
Date Mon Mar 25 10:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cpt_A Mitogen-activated prote 34.2 31 0.0011 24.2 2.9 35 47-87 80-114 (143)
2 2z83_A Helicase/nucleoside tri 28.9 37 0.0013 24.9 2.7 32 4-35 8-41 (459)
3 3gbl_A BETA2-microglobulin; im 21.5 23 0.00079 20.9 0.3 11 63-73 78-88 (97)
4 3p73_B Beta-2-microglobulin; I 20.8 23 0.00077 21.1 0.2 10 63-72 78-87 (99)
5 4gc0_A D-xylose-proton symport 18.9 42 0.0014 22.8 1.2 21 25-45 466-486 (491)
6 3k6r_A Putative transferase PH 16.4 89 0.003 22.4 2.5 30 4-33 113-144 (278)
7 3jts_B Beta-2-microglobulin; a 14.6 39 0.0013 21.1 0.2 10 63-72 98-107 (119)
8 1k5n_B Beta-2-microglobulin, l 14.5 39 0.0013 19.9 0.2 10 63-72 79-88 (100)
9 2qf4_A Cell shape determining 14.3 68 0.0023 21.5 1.3 19 11-29 106-124 (172)
10 4ex8_A ALNA; alpha/beta/alpha- 14.2 64 0.0022 25.3 1.3 15 24-38 282-296 (316)
No 1
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=34.16 E-value=31 Score=24.23 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=24.7
Q ss_pred hhhhcccccceeeeeecceecccceeeeecCCCeeEEEecc
Q 042449 47 VAKRLVANDSISTSVHSTCRVSHARLVHMNRGPQLLTIFFG 87 (90)
Q Consensus 47 RkeqlG~eg~istsvhstcrvsharlvhmnrgpqlltiffg 87 (90)
-|=.+|.+-+|. |..+.--+||||.-|-.+||+-.
T Consensus 80 sKLglGknksII------~~Y~~yqvVq~n~~Plvit~Ias 114 (143)
T 3cpt_A 80 SKLGLSKNKSII------CYYNTYQVVQFNRLPLVVSFIAS 114 (143)
T ss_dssp HHHTCCCEEEEE------EECSSEEEEEEEETTEEEEEEEE
T ss_pred hhcCCCCCceEE------EEecCeEEEEEecCCEEEEEEec
Confidence 344466666653 66667778999999988887643
No 2
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=28.87 E-value=37 Score=24.92 Aligned_cols=32 Identities=25% Similarity=0.197 Sum_probs=17.0
Q ss_pred hhchhhhhhcccCCC-eeecCCCC-CCchHHHHH
Q 042449 4 QQGRQELDTRPRQGE-TVVPGGTG-GKSLEAQEH 35 (90)
Q Consensus 4 qq~R~ELD~rAr~GE-TVVpGGTG-GkSLeAQe~ 35 (90)
||-.+.-++..+.|+ .||-+-|| ||++-+..-
T Consensus 8 ~q~~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~ 41 (459)
T 2z83_A 8 QQMGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQ 41 (459)
T ss_dssp -------CGGGSTTCEEEECCCTTSCTTTTHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 444444466677766 55677786 899875433
No 3
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I, secreted, immune system; 2.10A {Ctenopharyngodon idella} SCOP: b.1.1.0
Probab=21.53 E-value=23 Score=20.93 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=9.0
Q ss_pred cceecccceee
Q 042449 63 STCRVSHARLV 73 (90)
Q Consensus 63 stcrvsharlv 73 (90)
-+|+|.|..|-
T Consensus 78 ytC~V~H~~l~ 88 (97)
T 3gbl_A 78 YSCSVRHMSKT 88 (97)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEEeCCCC
Confidence 58999998763
No 4
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} SCOP: b.1.1.0 PDB: 3p77_B* 4g43_B 4g42_B 4e0r_B 3bev_B 3bew_B 3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Probab=20.85 E-value=23 Score=21.06 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=8.2
Q ss_pred cceeccccee
Q 042449 63 STCRVSHARL 72 (90)
Q Consensus 63 stcrvsharl 72 (90)
-+|+|.|.-|
T Consensus 78 ytC~V~H~~l 87 (99)
T 3p73_B 78 YACKVEHETL 87 (99)
T ss_dssp EEEEEECTTC
T ss_pred EEEEEEeCCC
Confidence 4899999765
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=18.95 E-value=42 Score=22.78 Aligned_cols=21 Identities=43% Similarity=0.403 Sum_probs=12.3
Q ss_pred CCCCchHHHHHHhhccCCCch
Q 042449 25 TGGKSLEAQEHLAEGFSGKNH 45 (90)
Q Consensus 25 TGGkSLeAQe~LAEGRskGGq 45 (90)
|-||+||.=+.+=|.|+|--+
T Consensus 466 Tkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 466 TKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp CTTCCHHHHGGGTC-------
T ss_pred CCCCCHHHHHHHhCCCCcccc
Confidence 789999988888888776433
No 6
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=16.44 E-value=89 Score=22.37 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=23.7
Q ss_pred hhchhhhhhcccCCCeeec--CCCCCCchHHH
Q 042449 4 QQGRQELDTRPRQGETVVP--GGTGGKSLEAQ 33 (90)
Q Consensus 4 qq~R~ELD~rAr~GETVVp--GGTGGkSLeAQ 33 (90)
..+|..+-+..++|++|+= .|+|+.++.|=
T Consensus 113 ~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a 144 (278)
T 3k6r_A 113 VKERVRMAKVAKPDELVVDMFAGIGHLSLPIA 144 (278)
T ss_dssp HHHHHHHHHHCCTTCEEEETTCTTTTTTHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEecCcCcHHHHHHH
Confidence 3457778888899999975 78899998763
No 7
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune response, MHC I membrane, transmembrane, disease mutation; 2.80A {Homo sapiens}
Probab=14.59 E-value=39 Score=21.09 Aligned_cols=10 Identities=50% Similarity=0.969 Sum_probs=8.3
Q ss_pred cceeccccee
Q 042449 63 STCRVSHARL 72 (90)
Q Consensus 63 stcrvsharl 72 (90)
-+|+|.|..|
T Consensus 98 ytC~V~H~~l 107 (119)
T 3jts_B 98 YACRVNHVTL 107 (119)
T ss_dssp EEEEEECTTC
T ss_pred EEEEEEeCCC
Confidence 5899999765
No 8
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility complex), HLA(human leukocyte A immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B 1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B 1duz_B* ...
Probab=14.46 E-value=39 Score=19.91 Aligned_cols=10 Identities=50% Similarity=0.969 Sum_probs=8.1
Q ss_pred cceeccccee
Q 042449 63 STCRVSHARL 72 (90)
Q Consensus 63 stcrvsharl 72 (90)
-+|+|.|.-|
T Consensus 79 ytC~V~H~~l 88 (100)
T 1k5n_B 79 YACRVNHVTL 88 (100)
T ss_dssp EEEEEECTTC
T ss_pred EEEEEEcCCC
Confidence 4799999765
No 9
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=14.25 E-value=68 Score=21.52 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=15.8
Q ss_pred hhcccCCCeeecCCCCCCc
Q 042449 11 DTRPRQGETVVPGGTGGKS 29 (90)
Q Consensus 11 D~rAr~GETVVpGGTGGkS 29 (90)
+...+.|++||-.|.||.-
T Consensus 106 ~~~i~~GD~vvTSGl~g~f 124 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNFN 124 (172)
T ss_dssp CCCCCTTCEEEEECCSSSC
T ss_pred CCCCCCCCEEEECCCCCcC
Confidence 4568899999999999854
No 10
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=14.23 E-value=64 Score=25.31 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=12.5
Q ss_pred CCCCCchHHHHHHhh
Q 042449 24 GTGGKSLEAQEHLAE 38 (90)
Q Consensus 24 GTGGkSLeAQe~LAE 38 (90)
=|+|+||+|+..|-+
T Consensus 282 lT~G~Sl~aNiaLv~ 296 (316)
T 4ex8_A 282 ASGGMLPKAGRSLLL 296 (316)
T ss_dssp HTTTCHHHHHHHHHH
T ss_pred HcCCccHHHHHHHHH
Confidence 389999999988754
Done!