BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042451
         (529 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4VSN1|DUSTY_DANRE Dual serine/threonine and tyrosine protein kinase OS=Danio rerio
           GN=dstyk PE=2 SV=1
          Length = 885

 Score = 34.3 bits (77), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 51  MSESDVSLTFSVGLEGFESLEPQKTMWVSDKCLLSSEKPFLPLVLQLLQEIITRSPTVHD 110
           ++E +++L  ++  E    + P + +   ++ L   ++  LP+VL  +      +  + D
Sbjct: 173 LAELEITLHHTLLQEVKIMVLPCRNVQPLEEALEDCKRGILPIVLYAVSRESLSAQQLED 232

Query: 111 SSCPRSQLQKLKPEPISWIMDSHSPES---FSSFFNLLFLTRLFWSCACDAPSVVGSFYF 167
               R  L    P P+ +I  S        F+   +L  ++    +CAC AP+   +   
Sbjct: 233 LQTLRESL----PFPVCFIRVSDGGGGGALFTQLASLQLISASAGNCACGAPAAQSAGRM 288

Query: 168 NSVLSPNIEALTCNHAPVLRTFLENVGVDA 197
             VL  ++E L     P  R  L+N  V+A
Sbjct: 289 QGVLCDSLERLQRVLVPFTRQVLQNQQVEA 318


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,415,742
Number of Sequences: 539616
Number of extensions: 8568477
Number of successful extensions: 16713
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16713
Number of HSP's gapped (non-prelim): 1
length of query: 529
length of database: 191,569,459
effective HSP length: 122
effective length of query: 407
effective length of database: 125,736,307
effective search space: 51174676949
effective search space used: 51174676949
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)