Query 042451
Match_columns 529
No_of_seqs 39 out of 41
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 06:18:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12473 hypothetical protein; 66.5 6.5 0.00014 39.2 3.6 40 452-500 103-143 (198)
2 COG4792 EscU Type III secretor 57.6 27 0.00058 37.4 6.4 101 97-221 99-217 (349)
3 PF13617 Lipoprotein_19: YnbE- 21.8 64 0.0014 26.8 1.9 22 301-322 28-50 (59)
4 PF01506 HCV_NS5a: Hepatitis C 19.8 24 0.00051 24.4 -0.9 9 3-11 6-14 (23)
5 PF03633 Glyco_hydro_65C: Glyc 19.6 2E+02 0.0043 22.1 4.1 27 293-319 10-36 (54)
6 PF14026 DUF4242: Protein of u 18.3 33 0.00072 28.9 -0.5 9 153-161 49-57 (77)
7 PLN03023 Expansin-like B1; Pro 14.2 1.1E+03 0.024 24.4 9.0 52 289-361 130-183 (247)
8 PF13897 GOLD_2: Golgi-dynamic 12.8 2E+02 0.0043 27.6 3.1 23 468-490 3-25 (136)
9 PF15013 CCSMST1: CCSMST1 fami 12.8 1.3E+02 0.0029 26.1 1.7 35 141-176 35-69 (77)
10 PF14097 SpoVAE: Stage V sporu 12.2 4.5E+02 0.0098 26.3 5.3 58 249-312 51-109 (180)
No 1
>PRK12473 hypothetical protein; Provisional
Probab=66.46 E-value=6.5 Score=39.24 Aligned_cols=40 Identities=18% Similarity=0.463 Sum_probs=34.4
Q ss_pred CCC-cccCCceEEccccCCCeeEEeeCcccCCceEEEEEeeEEEEEecCC
Q 042451 452 NRP-FTKSGGLVFGRDEYGEGVTWRLSREMEGSVLKWRIGGQIWLSYWPN 500 (529)
Q Consensus 452 ~rP-FTk~GGVvFaGdEyge~v~WR~~k~~eGktm~W~I~G~iw~TY~PN 500 (529)
.+| |++++|+.||.+|.- .-..+||+| ..+|.+|+-|.++
T Consensus 103 ~LP~v~ke~~iLFa~ee~K-------~i~l~gKki--~Ye~n~WiG~~R~ 143 (198)
T PRK12473 103 KLPAITDEQGILFAKEEVK-------NATLDGKKM--KYEGNVIIGSGRK 143 (198)
T ss_pred hcccCCCCceeEEeccchh-------ceeECCeEE--EEeccEEEecCCC
Confidence 445 999999999998832 678899999 9999999999965
No 2
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=57.62 E-value=27 Score=37.41 Aligned_cols=101 Identities=15% Similarity=0.300 Sum_probs=61.6
Q ss_pred HHHHHHhcCCCCCCCCCCcccccCCCCCcccccccCCCCCCcchhhH-------------HHHHHHHHHhhhccCCcccc
Q 042451 97 LLQEIITRSPTVHDSSCPRSQLQKLKPEPISWIMDSHSPESFSSFFN-------------LLFLTRLFWSCACDAPSVVG 163 (529)
Q Consensus 97 ll~evl~~sp~~~~s~~~~~~~~kl~~e~v~~~~~~~~~~~~~~~Fn-------------L~flt~lF~lCi~eAP~~~g 163 (529)
++-.|+.+|+-- +.-.-.....|++| . +|++.+|+ .+.|+++||+|.+---..++
T Consensus 99 v~s~v~q~Gfl~-a~eai~p~~~kINP---------~--~~~K~ifS~rS~vEl~KS~lKV~vLslif~f~l~~~~~t~~ 166 (349)
T COG4792 99 VLSGVLQVGFLF-ALEAIKPKAEKINP---------V--QNAKRIFSLRSVVELLKSLLKVVVLSLIFWFMLHGYANTFL 166 (349)
T ss_pred HHHHHhhheeeE-eecccCCcccccCh---------h--hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677622 11113445567776 4 67777665 47899999999874332221
Q ss_pred cccccccchhhhhhhccCChh---HHHHHHHHhccchHHHHHH--HHhHHHHHHHHHhhhhcC
Q 042451 164 SFYFNSVLSPNIEALTCNHAP---VLRTFLENVGVDAELSFMR--TLGYITAKWLILREVGVG 221 (529)
Q Consensus 164 ~~~~~s~L~~~l~~~~~~~r~---a~~~lm~~lG~d~Ee~~MR--sl~yaltkW~i~rE~~~~ 221 (529)
+| ..|..++ +...+++.|+..+--+|.= =+-|+.-+--++||++-+
T Consensus 167 ----------~l--p~CG~~C~~~Vv~~~~~~L~~g~~~~ylv~sv~Dy~fqr~~~~K~lkMS 217 (349)
T COG4792 167 ----------YL--PGCGLYCALPVVSFLLRLLWVGVAVGYLVFSVADYAFQRYQILKELKMS 217 (349)
T ss_pred ----------hc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 23 6666544 5667777777765555542 356777788888887655
No 3
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=21.76 E-value=64 Score=26.75 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=14.7
Q ss_pred cCeEEEEEeeee-EEEEEeeecc
Q 042451 301 DGYIQVNARVDN-LRFHVAKLGF 322 (529)
Q Consensus 301 ~~~i~V~V~Vdn-vR~~V~~l~~ 322 (529)
+=.|.++|+||| ||++|++-..
T Consensus 28 PI~InlNVkI~heI~vkvDkel~ 50 (59)
T PF13617_consen 28 PITINLNVKIEHEIRVKVDKELD 50 (59)
T ss_pred CEEEEEEEEEeEEEEEEhHHHHH
Confidence 334566677764 8999887543
No 4
>PF01506 HCV_NS5a: Hepatitis C virus non-structural 5a protein membrane anchor; InterPro: IPR002868 The molecular function of the non-structural 5a viral protein is uncertain. The NS5a protein is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA-dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ].; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1R7F_A 1R7E_A 1R7C_A 1R7G_A 1R7D_A.
Probab=19.77 E-value=24 Score=24.40 Aligned_cols=9 Identities=56% Similarity=2.011 Sum_probs=7.3
Q ss_pred ccchhhhcC
Q 042451 3 DIWSWICEL 11 (529)
Q Consensus 3 Dvw~Wi~~L 11 (529)
|+|.|+|++
T Consensus 6 diWdWvc~~ 14 (23)
T PF01506_consen 6 DIWDWVCRV 14 (23)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 889999864
No 5
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=19.56 E-value=2e+02 Score=22.14 Aligned_cols=27 Identities=7% Similarity=0.357 Sum_probs=21.9
Q ss_pred EEEEEEEecCeEEEEEeeeeEEEEEee
Q 042451 293 LEYSVVFHDGYIQVNARVDNLRFHVAK 319 (529)
Q Consensus 293 l~y~V~~~~~~i~V~V~VdnvR~~V~~ 319 (529)
+.|++..|..+|+|.|.=+.|++....
T Consensus 10 l~F~~~~rg~~l~v~i~~~~v~v~~~~ 36 (54)
T PF03633_consen 10 LSFRLRYRGHWLEVEITHEKVTVTLLS 36 (54)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEECCEEEEEEEECCEEEEEEcc
Confidence 677888899999998888888777653
No 6
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=18.34 E-value=33 Score=28.94 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=8.2
Q ss_pred hhhccCCcc
Q 042451 153 SCACDAPSV 161 (529)
Q Consensus 153 lCi~eAP~~ 161 (529)
+|+||||+.
T Consensus 49 ~Cly~Ap~~ 57 (77)
T PF14026_consen 49 FCLYEAPDE 57 (77)
T ss_pred EEEEECCCH
Confidence 699999997
No 7
>PLN03023 Expansin-like B1; Provisional
Probab=14.24 E-value=1.1e+03 Score=24.44 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=37.6
Q ss_pred EEEEEEEEEEEecCeEEEEEee-e-eEEEEEeeeccccCCcccccccCCCcceeEEEeeeeeCceeeeeEEeecc
Q 042451 289 AVIQLEYSVVFHDGYIQVNARV-D-NLRFHVAKLGFKRNDDMEFNEERHFPSRVRVWVGPEVGSTYVAGMTLGRS 361 (529)
Q Consensus 289 ~vIQl~y~V~~~~~~i~V~V~V-d-nvR~~V~~l~~~~~~~g~~~eE~HFPSRI~L~vtP~~~~t~v~svSlgrS 361 (529)
++|+++|+ .|--+- . ||||+|..- ..||.-..|-|.=+-+.++|.+|.+-.+
T Consensus 130 Giv~v~Yr--------RVpC~~~G~~i~F~V~~~-------------s~~p~yl~vlv~~vgG~GdI~~V~Ik~~ 183 (247)
T PLN03023 130 GVVDVEYR--------RIPCRYAGYNLFFKVHEH-------------SRFPDYLAIVMLYQAGQNDILAVEIWQE 183 (247)
T ss_pred cEEEeEEE--------EEecccCCCceEEEEecC-------------CCCCceEEEEEEEcCCCccEEEEEEEec
Confidence 77888887 333332 2 799997543 3478888888888877889999998774
No 8
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=12.82 E-value=2e+02 Score=27.56 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.2
Q ss_pred CCCeeEEeeCcccCCceEEEEEe
Q 042451 468 YGEGVTWRLSREMEGSVLKWRIG 490 (529)
Q Consensus 468 yge~v~WR~~k~~eGktm~W~I~ 490 (529)
.||+|.=|||.+-+|+.+-|++.
T Consensus 3 ~Ge~~tvrVpt~~~G~~l~WeFa 25 (136)
T PF13897_consen 3 RGETVTVRVPTHPEGKCLFWEFA 25 (136)
T ss_pred cCcEEEEEcccCCCCCEEEEEEe
Confidence 48999999999999999999974
No 9
>PF15013 CCSMST1: CCSMST1 family
Probab=12.75 E-value=1.3e+02 Score=26.15 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHhhhccCCcccccccccccchhhhh
Q 042451 141 FFNLLFLTRLFWSCACDAPSVVGSFYFNSVLSPNIE 176 (529)
Q Consensus 141 ~FnL~flt~lF~lCi~eAP~~~g~~~~~s~L~~~l~ 176 (529)
.+++.+..++.|+|+.--..|+-...-++ |..+++
T Consensus 35 ~is~sl~~fliyFC~lReEnDiD~~L~~~-L~e~~~ 69 (77)
T PF15013_consen 35 PISLSLAAFLIYFCFLREENDIDRWLDKN-LYERVP 69 (77)
T ss_pred hhHHHHHHHHHHHhhccccccHHHHHHhh-HHhhcc
Confidence 67888888999999999999987665555 766663
No 10
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=12.22 E-value=4.5e+02 Score=26.34 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=44.0
Q ss_pred eeeeeeEeeecccccCCCCCCccchhhhhhhhccccceeeEEEEEEEEEEEe-cCeEEEEEeeee
Q 042451 249 GYAPVSAMKVTRSNEHNGKFPIIEAKESVLRYALAHQQLEAVIQLEYSVVFH-DGYIQVNARVDN 312 (529)
Q Consensus 249 ly~PVlaM~ve~s~~~~~~~~~~~~~d~~l~y~L~~QqlE~vIQl~y~V~~~-~~~i~V~V~Vdn 312 (529)
-|=||+.|--.... ..+.+-|..|+|=+.|.+.|+-==+..+=.-+ -+|+.|.|-||+
T Consensus 51 ~~DPV~VMfDD~G~------~g~G~GE~Al~~v~~h~~IeVLG~iAVASnT~~~~g~~VD~sidr 109 (180)
T PF14097_consen 51 PHDPVLVMFDDKGF------IGEGPGEQALEYVANHPDIEVLGAIAVASNTHGAEGTKVDVSIDR 109 (180)
T ss_pred CCCCEEEEEeCCCC------CCCCccHHHHHHHHcCCCceEEEEEEEEecCCCCCceEeEEEEcC
Confidence 46799999865533 34577899999999999999865554444444 689999999886
Done!