Query 042451
Match_columns 529
No_of_seqs 39 out of 41
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 10:37:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dkm_A E3 ubiquitin-protein li 29.4 16 0.00053 31.3 0.8 35 490-529 55-89 (89)
2 3zx7_A Lysenin; toxin, pore fo 14.1 90 0.0031 30.7 2.6 97 370-481 150-251 (309)
3 1v7l_A 3-isopropylmalate dehyd 10.7 96 0.0033 28.5 1.6 14 458-471 51-64 (163)
4 2pkp_A Homoaconitase small sub 10.4 98 0.0033 28.6 1.5 24 440-471 41-64 (170)
5 1r7c_A Genome polyprotein; mem 10.2 52 0.0018 23.4 -0.3 9 3-11 7-15 (31)
6 1kv9_A Type II quinohemoprotei 9.6 3.3E+02 0.011 28.9 5.4 64 420-496 443-517 (668)
7 4hik_A Protection of telomeres 8.3 2.2E+02 0.0075 25.7 2.9 34 308-344 89-122 (143)
8 3nol_A Glutamine cyclotransfer 8.2 7.3E+02 0.025 24.1 6.9 64 417-498 109-189 (262)
9 1yiq_A Quinohemoprotein alcoho 8.1 3.4E+02 0.012 28.9 4.8 65 420-497 460-535 (689)
10 3e8t_A Takeout 1, takeout-like 8.0 6.4E+02 0.022 22.9 6.1 42 280-321 114-164 (220)
No 1
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1
Probab=29.37 E-value=16 Score=31.34 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=26.9
Q ss_pred eeEEEEEecCCCccceeeeeeeeeecccccccccCCCCCC
Q 042451 490 GGQIWLSYWPNNVKSSYFETRCIDWCDEVDLPLIAGKYPS 529 (529)
Q Consensus 490 ~G~iw~TY~PNk~~t~yfETR~~ef~~~v~lpL~~~~~p~ 529 (529)
+|++.++ |+|..+..| ++-+.+.+||+++|+.+|+
T Consensus 55 ~gwv~V~-Wd~G~~n~Y----R~G~~G~~DL~~a~~~~~~ 89 (89)
T 3dkm_A 55 NGWIDVT-WDAGGSNSY----RMGAEGKFDLKLAPGYDPD 89 (89)
T ss_dssp TTEEEEE-ETTSCEEEE----EBSGGGCBCEEECTTCCC-
T ss_pred CCeEEEE-eCCCCeeeE----eecCCCcEeeEEccccCCC
Confidence 5667776 468878877 4567788899999999986
No 2
>3zx7_A Lysenin; toxin, pore forming toxin; HET: PC; 2.84A {Eisenia fetida} PDB: 3zxd_A* 3zxg_A*
Probab=14.13 E-value=90 Score=30.70 Aligned_cols=97 Identities=20% Similarity=0.387 Sum_probs=62.1
Q ss_pred EEEEEeeecc--CCCCCcceeEEee--eeeeecccCccceeccCCCeeEEEEEEecCCCceeeccccCCCCCCCCCcccc
Q 042451 370 ETQRILKGNY--GNTKIPKVKARAR--MTTKTRMRNWRWDQDVEGNAAVFDAVLCDNTTGQEFPTWKCDNNGDGGSRSFK 445 (529)
Q Consensus 370 ~~e~~v~gs~--~~~~~~gvkas~~--~sst~~~kpWRfEQ~~~G~~a~f~wvL~D~~~g~ev~s~kp~~~~~~pr~~f~ 445 (529)
.-.+++.|.- -+...++||-.-+ -.+-.+-|.|---- -|++-.|+.+||+-..|.++-+-+-.
T Consensus 150 srakilvgrqi~lg~t~irikhaerkeymtvi~rk~wpaat--lg~s~lfkfvl~ed~~g~riktlntm----------- 216 (309)
T 3zx7_A 150 SRAKIIVGRQIILGKTEIRIKHAERKEYMTVVSRKSWPAAT--LGHSKLFKFVLYEDWGGFRIKTLNTM----------- 216 (309)
T ss_dssp EEEEEEEECBCCTTTCEEEEEETTTTEEEEEEEETTEEEEE--EESCSCCCEEEEEETTEEEEEESCCS-----------
T ss_pred hhheEEeeeEEeecceeEEeechhhceeeEEEecccCchhh--cccCcceEEEEEecCCCcEEEEeccc-----------
Confidence 4456666654 2233466665433 23445667775433 57888899999999999999887654
Q ss_pred ccCCCCCCCcc-cCCceEEccccCCCeeEEeeCcccC
Q 042451 446 NRYSGANRPFT-KSGGLVFGRDEYGEGVTWRLSREME 481 (529)
Q Consensus 446 ~Ry~~~~rPFT-k~GGVvFaGdEyge~v~WR~~k~~e 481 (529)
|+|-+-+++ -+||+-|--.--...--|-+.|.+-
T Consensus 217 --y~gye~ayssdqggiyfde~sdnpkqrwal~kalp 251 (309)
T 3zx7_A 217 --YSGYEYAYSSDQGGIYFDQGTDNPKQRWAINKSLP 251 (309)
T ss_dssp --STTCCEEEECTTCBEEEECCCSCGGGCEEESSCSS
T ss_pred --cCCceeeeecCCCceEeccCCCChHHhhhhcccCc
Confidence 444444443 4899999543333456788888764
No 3
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=10.73 E-value=96 Score=28.51 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=12.5
Q ss_pred CCceEEccccCCCe
Q 042451 458 SGGLVFGRDEYGEG 471 (529)
Q Consensus 458 ~GGVvFaGdEyge~ 471 (529)
.|.|++||+.||.+
T Consensus 51 ~g~iivag~nfG~G 64 (163)
T 1v7l_A 51 PGDVVVAGKNFGIG 64 (163)
T ss_dssp TTCEEECCSSBTBS
T ss_pred CCCEEEecCcCCCC
Confidence 48999999999975
No 4
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=10.41 E-value=98 Score=28.61 Aligned_cols=24 Identities=17% Similarity=0.508 Sum_probs=17.5
Q ss_pred CCccccccCCCCCCCcccCCceEEccccCCCe
Q 042451 440 GSRSFKNRYSGANRPFTKSGGLVFGRDEYGEG 471 (529)
Q Consensus 440 pr~~f~~Ry~~~~rPFTk~GGVvFaGdEyge~ 471 (529)
++.-|-.|+. .|.||+||++||.+
T Consensus 41 ~~p~f~~~~~--------~~~iivaG~nfG~G 64 (170)
T 2pkp_A 41 IDENFPKKVK--------EGDVIVAGENFGCG 64 (170)
T ss_dssp TCTTHHHHCC--------TTCEEEECTTBTBS
T ss_pred CCCchHHhCC--------CCCEEEecCCCCCC
Confidence 3333766653 48999999999975
No 5
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=10.20 E-value=52 Score=23.38 Aligned_cols=9 Identities=78% Similarity=2.162 Sum_probs=6.8
Q ss_pred ccchhhhcC
Q 042451 3 DIWSWICEL 11 (529)
Q Consensus 3 Dvw~Wi~~L 11 (529)
|||.|+|..
T Consensus 7 ~iwdWvctv 15 (31)
T 1r7c_A 7 DIWDWICEV 15 (31)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788888863
No 6
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=9.64 E-value=3.3e+02 Score=28.85 Aligned_cols=64 Identities=13% Similarity=0.282 Sum_probs=39.7
Q ss_pred ecCCCceeeccccCCCCCCCCCccccccCCCCCCCcccCCceEEccccCCC---------eeEEee--CcccCCceEEEE
Q 042451 420 CDNTTGQEFPTWKCDNNGDGGSRSFKNRYSGANRPFTKSGGLVFGRDEYGE---------GVTWRL--SREMEGSVLKWR 488 (529)
Q Consensus 420 ~D~~~g~ev~s~kp~~~~~~pr~~f~~Ry~~~~rPFTk~GGVvFaGdEyge---------~v~WR~--~k~~eGktm~W~ 488 (529)
+|..||+++-+.+-. .+...-+++..||+||.|+.-|+ .+.|++ +....+.-+-+.
T Consensus 443 ~D~~tG~~~W~~~~~-------------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~ 509 (668)
T 1kv9_A 443 WDPVKQKAAWKVPYP-------------THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE 509 (668)
T ss_dssp EETTTTEEEEEEEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred EeCCCCcEEEEccCC-------------CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEE
Confidence 688899877544311 11123578889999999975443 455665 333344566667
Q ss_pred EeeEEEEE
Q 042451 489 IGGQIWLS 496 (529)
Q Consensus 489 I~G~iw~T 496 (529)
+.|+.++.
T Consensus 510 ~~G~~yva 517 (668)
T 1kv9_A 510 LAGRQYVA 517 (668)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 77777654
No 7
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=8.26 E-value=2.2e+02 Score=25.73 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=24.3
Q ss_pred EeeeeEEEEEeeeccccCCcccccccCCCcceeEEEe
Q 042451 308 ARVDNLRFHVAKLGFKRNDDMEFNEERHFPSRVRVWV 344 (529)
Q Consensus 308 V~VdnvR~~V~~l~~~~~~~g~~~eE~HFPSRI~L~v 344 (529)
|++.|||++..+.+ .+| |...+.+.||.+|.+.+
T Consensus 89 v~L~Nv~iK~~~~g--~LE-G~l~~dr~~~~ki~v~~ 122 (143)
T 4hik_A 89 VVMKNVRTKIDHLG--YLE-CILHGDSAKRYNMSIEK 122 (143)
T ss_dssp EEEEEEEEEECTTS--CEE-EEECCCTTCCSCCEEEE
T ss_pred EEEEeEEEeecCCc--eEE-EEEcCCCCCCCcceEEE
Confidence 68899999988853 333 34555678898887765
No 8
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=8.21 E-value=7.3e+02 Score=24.09 Aligned_cols=64 Identities=20% Similarity=0.387 Sum_probs=44.3
Q ss_pred EEEecCCCceeeccccCCCCCCCCCccccccCCCCCCCcccCCceEEccccCCCeeEEeeCccc-----------CCce-
Q 042451 417 AVLCDNTTGQEFPTWKCDNNGDGGSRSFKNRYSGANRPFTKSGGLVFGRDEYGEGVTWRLSREM-----------EGSV- 484 (529)
Q Consensus 417 wvL~D~~~g~ev~s~kp~~~~~~pr~~f~~Ry~~~~rPFTk~GGVvFaGdEyge~v~WR~~k~~-----------eGkt- 484 (529)
.+.||..+++.+.+-+-. +-+--++..|+.++..|+ ....|.++-+. .|+.
T Consensus 109 v~v~D~~t~~~~~ti~~~---------------~eG~glt~dg~~L~~SdG--s~~i~~iDp~T~~v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYD---------------GEGWGLTHNDQYLIMSDG--TPVLRFLDPESLTPVRTITVTAHGEEL 171 (262)
T ss_dssp EEEEETTTCCEEEEEECS---------------SCCCCEEECSSCEEECCS--SSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred EEEEECccCcEEEEEECC---------------CCceEEecCCCEEEEECC--CCeEEEEcCCCCeEEEEEEeccCCccc
Confidence 567899999888776432 233456777899999984 44556565442 3444
Q ss_pred -----EEEEEeeEEEEEec
Q 042451 485 -----LKWRIGGQIWLSYW 498 (529)
Q Consensus 485 -----m~W~I~G~iw~TY~ 498 (529)
|+|- +|+||+.=|
T Consensus 172 ~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 172 PELNELEWV-DGEIFANVW 189 (262)
T ss_dssp CCEEEEEEE-TTEEEEEET
T ss_pred cccceeEEE-CCEEEEEEc
Confidence 7884 999999988
No 9
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=8.05 E-value=3.4e+02 Score=28.95 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=42.3
Q ss_pred ecCCCceeeccccCCCCCCCCCccccccCCCCCCCcccCCceEEccccCC---------CeeEEee--CcccCCceEEEE
Q 042451 420 CDNTTGQEFPTWKCDNNGDGGSRSFKNRYSGANRPFTKSGGLVFGRDEYG---------EGVTWRL--SREMEGSVLKWR 488 (529)
Q Consensus 420 ~D~~~g~ev~s~kp~~~~~~pr~~f~~Ry~~~~rPFTk~GGVvFaGdEyg---------e~v~WR~--~k~~eGktm~W~ 488 (529)
.|..||+++-+.+-. .+...-+++..||+||.|+.-| -.+.|++ +....+.-|-|+
T Consensus 460 ~D~~tG~~~W~~~~~-------------~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~ 526 (689)
T 1yiq_A 460 WDPVKQQAAWEVPYV-------------TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYS 526 (689)
T ss_dssp EETTTTEEEEEEEES-------------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred EECCCCCeEeEccCC-------------CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEE
Confidence 688888876554211 1122348999999999997432 2345665 445556778888
Q ss_pred EeeEEEEEe
Q 042451 489 IGGQIWLSY 497 (529)
Q Consensus 489 I~G~iw~TY 497 (529)
+.|+.++.-
T Consensus 527 ~~G~qyv~~ 535 (689)
T 1yiq_A 527 VDGEQYVTF 535 (689)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 888877663
No 10
>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*
Probab=8.02 E-value=6.4e+02 Score=22.86 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=27.0
Q ss_pred hccccceeeEEEEEEEEEEEe-cC--eE-----EEEEee-eeEEEEEeeec
Q 042451 280 YALAHQQLEAVIQLEYSVVFH-DG--YI-----QVNARV-DNLRFHVAKLG 321 (529)
Q Consensus 280 y~L~~QqlE~vIQl~y~V~~~-~~--~i-----~V~V~V-dnvR~~V~~l~ 321 (529)
+.+..+-+.+.+.+.+.+.-+ ++ |+ ++.+.| ++++++.++|-
T Consensus 114 ~~~~l~n~~~~~~~~~~~~~~~~G~~yl~i~~~~~~~~~~~~~~~~~~nLf 164 (220)
T 3e8t_A 114 MKLKLKNIHIHLVVSYEMEKDAEGVDHVIFKKYTVTFDVKDNAQFGLTNLF 164 (220)
T ss_dssp EEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEESSBG
T ss_pred EEEEEeeeEEEEEEEEEEEEecCCCEEEEEEEEEEEEEECCcEEEEEEcCC
Confidence 445556666666777776665 33 55 346777 77777777774
Done!