BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042453
(666 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 47/307 (15%)
Query: 342 LLRILNVAAFAVSGYAS-------SEGRHCKPFNPLLGETY-----EADYPEKG-VRFFS 388
L R+L V + +S S S G KP NP LGE + ++PE G S
Sbjct: 81 LARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLS 140
Query: 389 EKVSHHPTVIACHC--EGKGWKFWGDSNLRTKFWGRSIQL--DPVGVLTVEFDDGEVFQW 444
E+VSHHP V A + K G + ++ F +S+ L G ++ D E +
Sbjct: 141 EQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTVKQFGHTMLDIKD-ESYLV 198
Query: 445 SKVTTSIYNLILGKIYCDHHGTMEIHGNCQYSCKLKFKEQSILD--RNPHQVNGFVEDVL 502
+ I +++ + + G I + C ++F + +N + + +
Sbjct: 199 TPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGKKNSFKARIYKDSKD 258
Query: 503 GKKVATLFGKWDNSMYYISGD--GSGKLKDGNVSPDASLLWKSNKAPLNLTRYNLTSFAI 560
K + ++Y ISG GS K+ N ++ L + + + P A
Sbjct: 259 SKDK-------EKALYTISGQWSGSSKIIKANKKEESRLFYDAARIP-----------AE 300
Query: 561 TLNELTPGLQEKLPPTDSRLRPD-QRHLENGEYEKANAEKQRLERRQRMSRKLQEN---G 616
LN L+E+ P + D ++ G++ K LE QR RK +E
Sbjct: 301 HLN--VKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGIS 358
Query: 617 WKPRWFR 623
W+ RWF+
Sbjct: 359 WQRRWFK 365
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 47/307 (15%)
Query: 342 LLRILNVAAFAVSGYAS-------SEGRHCKPFNPLLGETY-----EADYPEKG-VRFFS 388
L R+L V + +S S S G KP NP LGE + ++PE G S
Sbjct: 83 LARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLS 142
Query: 389 EKVSHHPTVIACHC--EGKGWKFWGDSNLRTKFWGRSIQL--DPVGVLTVEFDDGEVFQW 444
E+VSHHP V A + K G + ++ F +S+ L G ++ D E +
Sbjct: 143 EQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTVKQFGHTMLDIKD-ESYLV 200
Query: 445 SKVTTSIYNLILGKIYCDHHGTMEIHGNCQYSCKLKFKEQSILD--RNPHQVNGFVEDVL 502
+ I +++ + + G I + C ++F + +N + + +
Sbjct: 201 TPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEFSGRGYFSGKKNSFKARIYKDSKD 260
Query: 503 GKKVATLFGKWDNSMYYISG--DGSGKLKDGNVSPDASLLWKSNKAPLNLTRYNLTSFAI 560
K + ++Y ISG GS K+ N ++ L + + + P A
Sbjct: 261 SKDK-------EKALYTISGQWSGSSKIIKANKKEESRLFYDAARIP-----------AE 302
Query: 561 TLNELTPGLQEKLPPTDSRLRPD-QRHLENGEYEKANAEKQRLERRQRMSRKLQEN---G 616
LN L+E+ P + D ++ G++ K LE QR RK +E
Sbjct: 303 HLN--VKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGIS 360
Query: 617 WKPRWFR 623
W+ RWF+
Sbjct: 361 WQRRWFK 367
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 123/307 (40%), Gaps = 50/307 (16%)
Query: 342 LLRILNVAAFAVSGYAS-------SEGRHCKPFNPLLGETY-----EADYPEKG-VRFFS 388
L R+L V + +S S S G KP NP LGE + ++PE G S
Sbjct: 54 LARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLLS 113
Query: 389 EKVSHHPTVIACHC--EGKGWKFWGDSNLRTKFWGRSIQL--DPVGVLTVEFDDGEVFQW 444
E+VSHHP V A + K G + ++ F +S+ L G ++ D E +
Sbjct: 114 EQVSHHPPVTAFSIFNDKNKVKLQGYNQIKASF-TKSLMLTVKQFGHTMLDIKD-ESYLV 171
Query: 445 SKVTTSIYNLILGKIYCDHHGTMEIHGNCQYSCKLKFKEQSILD--RNPHQVNGFVEDVL 502
+ I +++ + + G I + C ++F S +D +N + + +
Sbjct: 172 TPPPLHIEGILVASPFVELEGKSYIQSSTGLLCVIEF---SGVDGKKNSFKARIYKDSKD 228
Query: 503 GKKVATLFGKWDNSMYYISGD--GSGKLKDGNVSPDASLLWKSNKAPLNLTRYNLTSFAI 560
K + ++Y ISG GS K+ N ++ L + + + P A
Sbjct: 229 SKDK-------EKALYTISGQWSGSSKIIKANKKEESRLFYDAARIP-----------AE 270
Query: 561 TLNELTPGLQEKLPPTDSRLRPD-QRHLENGEYEKANAEKQRLERRQRMSRKLQEN---G 616
LN L+E+ P + D ++ G++ K LE QR RK +E
Sbjct: 271 HLN--VKPLEEQHPLESRKAWYDVAGAIKLGDFNLIAKTKTELEETQRELRKEEEAKGIS 328
Query: 617 WKPRWFR 623
W+ RWF+
Sbjct: 329 WQRRWFK 335
>pdb|3FDJ|A Chain A, The Structure Of A Degv Family Protein From Eubacterium
Eligens
Length = 278
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 464 HGTMEIHGNCQYSCKLKFKEQSILD---------RNPHQVNGFVEDVLGKKVATLFGKWD 514
HGT+E G C+ KL K Q++LD R H N + D + + +G D
Sbjct: 193 HGTLEAIGKCRGDKKLLVKLQALLDDAGYEGGKLRICHVENEALADKIADXIKQAYGTTD 252
Query: 515 NSMYYISG 522
+Y G
Sbjct: 253 VCVYKAGG 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,363,218
Number of Sequences: 62578
Number of extensions: 940784
Number of successful extensions: 2392
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2383
Number of HSP's gapped (non-prelim): 9
length of query: 666
length of database: 14,973,337
effective HSP length: 105
effective length of query: 561
effective length of database: 8,402,647
effective search space: 4713884967
effective search space used: 4713884967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)