Query 042453
Match_columns 666
No_of_seqs 236 out of 1091
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1737 Oxysterol-binding prot 100.0 1E-114 2E-119 985.5 36.6 628 3-653 90-799 (799)
2 KOG2209 Oxysterol-binding prot 100.0 8E-105 2E-109 810.1 16.6 380 267-653 23-445 (445)
3 PF01237 Oxysterol_BP: Oxyster 100.0 3.1E-96 7E-101 791.5 23.3 343 287-639 1-353 (354)
4 KOG2210 Oxysterol-binding prot 100.0 1E-65 2.2E-70 549.2 20.8 327 286-639 35-378 (392)
5 cd01247 PH_GPBP Goodpasture an 99.5 1.9E-13 4.2E-18 120.6 9.0 75 3-79 12-90 (91)
6 PF15409 PH_8: Pleckstrin homo 99.4 1E-12 2.2E-17 115.3 9.0 78 3-81 11-89 (89)
7 cd01265 PH_PARIS-1 PARIS-1 ple 99.3 4.1E-12 8.9E-17 112.9 9.0 79 3-81 14-94 (95)
8 cd01238 PH_Tec Tec pleckstrin 99.1 3.7E-10 8E-15 102.4 8.5 74 5-80 20-106 (106)
9 cd01246 PH_oxysterol_bp Oxyste 99.0 3.8E-09 8.1E-14 91.2 9.6 76 3-80 12-91 (91)
10 PF15413 PH_11: Pleckstrin hom 98.9 4.1E-09 9E-14 96.5 8.6 77 3-80 13-112 (112)
11 cd01235 PH_SETbf Set binding f 98.9 8.7E-09 1.9E-13 91.4 9.5 79 3-81 12-101 (101)
12 cd01251 PH_centaurin_alpha Cen 98.9 1.1E-08 2.3E-13 92.4 9.5 79 3-83 13-102 (103)
13 cd01244 PH_RasGAP_CG9209 RAS_G 98.9 8.7E-09 1.9E-13 92.4 8.7 75 4-80 19-98 (98)
14 cd01233 Unc104 Unc-104 pleckst 98.8 1.2E-08 2.5E-13 91.5 9.0 76 3-80 15-97 (100)
15 cd01264 PH_melted Melted pleck 98.6 1.1E-07 2.5E-12 85.6 8.8 76 3-80 16-100 (101)
16 cd01250 PH_centaurin Centaurin 98.6 1.3E-07 2.8E-12 82.1 8.3 76 3-80 13-94 (94)
17 cd01257 PH_IRS Insulin recepto 98.6 1.6E-07 3.5E-12 84.7 9.1 75 5-79 13-100 (101)
18 cd01236 PH_outspread Outspread 98.6 3E-07 6.5E-12 83.4 9.0 75 3-79 21-102 (104)
19 cd01260 PH_CNK Connector enhan 98.5 2.7E-07 5.8E-12 81.6 8.0 74 5-80 19-96 (96)
20 cd01219 PH_FGD FGD (faciogenit 98.5 4.8E-07 1E-11 81.3 9.4 77 4-82 16-100 (101)
21 KOG1739 Serine/threonine prote 98.5 1.6E-07 3.5E-12 102.5 6.6 78 3-82 37-117 (611)
22 cd01266 PH_Gab Gab (Grb2-assoc 98.5 7.5E-07 1.6E-11 80.9 9.1 76 4-79 17-106 (108)
23 cd01252 PH_cytohesin Cytohesin 98.4 1.1E-06 2.4E-11 81.6 9.7 81 3-85 13-117 (125)
24 PF00169 PH: PH domain; Inter 98.4 2E-06 4.4E-11 74.3 9.8 76 4-81 15-103 (104)
25 cd01237 Unc112 Unc-112 pleckst 98.3 2.1E-06 4.6E-11 77.8 8.2 76 3-80 17-102 (106)
26 smart00233 PH Pleckstrin homol 98.2 9.3E-06 2E-10 68.7 9.2 76 4-81 16-101 (102)
27 cd01220 PH_CDEP Chondrocyte-de 98.1 1.2E-05 2.7E-10 72.2 9.1 75 6-82 16-98 (99)
28 cd00821 PH Pleckstrin homology 98.1 2.2E-05 4.8E-10 65.8 8.7 75 4-80 14-96 (96)
29 cd01254 PH_PLD Phospholipase D 98.0 1.9E-05 4.1E-10 73.4 8.0 76 3-80 30-121 (121)
30 cd01241 PH_Akt Akt pleckstrin 98.0 2.4E-05 5.1E-10 70.5 7.8 78 3-81 14-102 (102)
31 cd01245 PH_RasGAP_CG5898 RAS G 97.8 5.4E-05 1.2E-09 68.0 7.6 76 3-79 13-97 (98)
32 cd01253 PH_beta_spectrin Beta- 97.8 9.5E-05 2.1E-09 66.2 8.1 75 4-80 21-104 (104)
33 cd01218 PH_phafin2 Phafin2 Pl 97.7 0.00024 5.3E-09 64.5 9.3 78 5-84 17-101 (104)
34 cd01263 PH_anillin Anillin Ple 97.6 0.00012 2.6E-09 68.4 6.7 76 3-80 16-122 (122)
35 cd00900 PH-like Pleckstrin hom 97.6 0.00043 9.3E-09 58.4 9.0 75 4-80 17-99 (99)
36 PF14593 PH_3: PH domain; PDB: 97.4 0.00046 9.9E-09 62.7 7.5 75 7-84 28-102 (104)
37 cd01261 PH_SOS Son of Sevenles 97.3 0.0017 3.6E-08 59.9 9.4 75 7-83 21-111 (112)
38 cd01222 PH_clg Clg (common-sit 97.2 0.0016 3.5E-08 58.5 8.8 72 8-81 18-95 (97)
39 cd01249 PH_oligophrenin Oligop 96.9 0.0026 5.7E-08 57.7 6.9 45 34-78 54-102 (104)
40 cd01230 PH_EFA6 EFA6 Pleckstri 96.5 0.016 3.5E-07 53.8 9.0 79 5-85 25-115 (117)
41 cd01262 PH_PDK1 3-Phosphoinosi 96.4 0.011 2.4E-07 52.2 7.0 73 7-81 16-88 (89)
42 PF15406 PH_6: Pleckstrin homo 96.3 0.0082 1.8E-07 54.7 5.9 63 16-79 47-111 (112)
43 cd01232 PH_TRIO Trio pleckstri 95.4 0.042 9.1E-07 50.9 6.7 71 9-81 27-112 (114)
44 cd01221 PH_ephexin Ephexin Ple 95.1 0.063 1.4E-06 50.5 7.0 65 14-78 33-119 (125)
45 KOG0930 Guanine nucleotide exc 94.4 0.14 3E-06 53.9 7.8 81 5-87 276-381 (395)
46 cd01224 PH_Collybistin Collybi 94.1 0.36 7.8E-06 44.4 9.2 72 7-81 19-107 (109)
47 KOG0521 Putative GTPase activa 93.9 0.054 1.2E-06 65.0 4.4 54 31-84 315-371 (785)
48 cd01248 PH_PLC Phospholipase C 93.5 0.26 5.6E-06 45.2 7.2 35 45-79 76-114 (115)
49 KOG1090 Predicted dual-specifi 93.3 0.044 9.6E-07 65.4 2.1 79 3-81 1647-1731(1732)
50 cd01227 PH_Dbs Dbs (DBL's big 93.2 0.2 4.3E-06 47.7 6.1 66 18-83 39-117 (133)
51 cd01226 PH_exo84 Exocyst compl 91.6 0.44 9.6E-06 43.2 5.8 66 17-82 28-99 (100)
52 PF12814 Mcp5_PH: Meiotic cell 91.3 1.3 2.9E-05 41.2 9.1 77 5-81 29-121 (123)
53 cd01228 PH_BCR-related BCR (br 89.3 0.81 1.8E-05 41.0 5.4 69 5-80 16-93 (96)
54 PTZ00267 NIMA-related protein 88.0 0.72 1.6E-05 52.2 5.4 36 47-82 441-477 (478)
55 cd01223 PH_Vav Vav pleckstrin 87.9 1.7 3.6E-05 40.5 6.6 66 18-83 30-113 (116)
56 KOG0705 GTPase-activating prot 87.6 0.37 8.1E-06 55.1 2.7 39 45-83 442-481 (749)
57 KOG4424 Predicted Rho/Rac guan 86.7 0.62 1.4E-05 53.4 3.8 40 48-87 336-375 (623)
58 KOG0690 Serine/threonine prote 85.8 1.4 3.1E-05 47.9 5.7 82 3-85 28-120 (516)
59 cd01242 PH_ROK Rok (Rho- assoc 84.8 4.9 0.00011 37.2 7.9 76 5-81 19-110 (112)
60 PF15410 PH_9: Pleckstrin homo 83.6 4.3 9.3E-05 37.5 7.3 73 8-80 26-117 (119)
61 cd01256 PH_dynamin Dynamin ple 83.4 5.1 0.00011 36.4 7.2 72 5-78 18-102 (110)
62 cd01243 PH_MRCK MRCK (myotonic 81.8 2.4 5.2E-05 39.7 4.7 36 46-81 77-119 (122)
63 KOG1117 Rho- and Arf-GTPase ac 76.0 2 4.4E-05 51.4 3.0 78 2-82 199-280 (1186)
64 KOG2059 Ras GTPase-activating 72.0 4.7 0.0001 47.6 4.6 77 9-87 587-670 (800)
65 cd01234 PH_CADPS CADPS (Ca2+-d 70.3 9.8 0.00021 34.9 5.3 77 4-80 17-109 (117)
66 PF08458 PH_2: Plant pleckstri 68.7 18 0.00038 33.5 6.7 32 49-80 71-102 (110)
67 PTZ00283 serine/threonine prot 66.0 5.6 0.00012 45.4 3.7 35 48-82 455-490 (496)
68 KOG3723 PH domain protein Melt 65.9 3.7 7.9E-05 47.3 2.1 78 4-83 752-838 (851)
69 PF15405 PH_5: Pleckstrin homo 63.6 13 0.00028 35.5 5.0 37 45-81 94-135 (135)
70 cd01225 PH_Cool_Pix Cool (clon 62.6 28 0.0006 32.3 6.7 64 17-80 37-108 (111)
71 KOG3520 Predicted guanine nucl 59.2 9.4 0.0002 47.6 4.0 59 29-87 665-727 (1167)
72 cd01258 PH_syntrophin Syntroph 54.7 22 0.00048 32.8 4.8 34 46-79 72-107 (108)
73 PF15277 Sec3-PIP2_bind: Exocy 48.5 53 0.0011 29.2 6.1 46 36-82 44-89 (91)
74 PLN00188 enhanced disease resi 48.1 32 0.0007 41.2 5.9 68 15-84 30-112 (719)
75 PF15404 PH_4: Pleckstrin homo 47.6 17 0.00038 36.5 3.2 24 56-79 160-183 (185)
76 PLN02866 phospholipase D 44.1 78 0.0017 39.7 8.4 78 6-85 218-311 (1068)
77 KOG0248 Cytoplasmic protein Ma 39.2 28 0.00061 41.3 3.6 79 6-86 265-346 (936)
78 KOG3531 Rho guanine nucleotide 38.6 24 0.00052 42.7 2.9 77 5-86 763-849 (1036)
79 KOG0689 Guanine nucleotide exc 33.5 37 0.00079 38.8 3.3 50 34-83 306-362 (448)
80 KOG1451 Oligophrenin-1 and rel 32.4 39 0.00084 39.5 3.2 49 33-81 315-367 (812)
81 KOG3727 Mitogen inducible gene 31.0 43 0.00093 39.0 3.3 61 19-80 390-457 (664)
82 PF10504 DUF2452: Protein of u 25.6 1.5E+02 0.0033 29.2 5.5 25 364-388 85-109 (159)
83 KOG0859 Synaptobrevin/VAMP-lik 23.6 1.7E+02 0.0037 29.9 5.6 44 45-88 38-91 (217)
84 PF15411 PH_10: Pleckstrin hom 22.0 2.4E+02 0.0053 26.2 6.0 33 45-77 80-116 (116)
85 PF14254 DUF4348: Domain of un 20.8 1E+02 0.0022 32.9 3.6 41 445-485 224-266 (273)
No 1
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=100.00 E-value=1e-114 Score=985.46 Aligned_cols=628 Identities=38% Similarity=0.592 Sum_probs=503.3
Q ss_pred cccceeeeeeeecCCCceeEEeccCC---ccc------------------------------------------eeEEee
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVGS---LAF------------------------------------------GDLEGI 37 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~~---~~~------------------------------------------G~i~L~ 37 (666)
+.||.=|.||+. .+.|+||.-.+. ..+ +.+||+
T Consensus 90 ~~~~~~r~f~l~--~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 90 SKGPSSRWFVLS--GGLLSYYFDNSFSKTTCGGGINLVTAWIQNGERMDICSVDGSCQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred cCCcccceEEec--CcceeeeccCCccccCCCCcccccccccccCCCcccchhhcccchhhhhhhHHHhhcchhhhhhhc
Confidence 457778888887 888999864441 111 225555
Q ss_pred -eeEEeecCCCCccEEEEeCCcEEEEEcCC---h-hhHHHHHHHHHHHhHhCCccc-cCCCCccCCCcccc---------
Q 042453 38 -ISSFRESKSDDRRFYIFTATKTLHLRTNS---R-RDRVAWIQALVSTRSLYPLRT-LNDGLSIVPKDLSI--------- 102 (666)
Q Consensus 38 -~a~i~~~~~d~~~f~i~~~~~~~~lra~~---~-~~r~~Wi~al~~~~~~~~~~~-~~~~~~~~~~~~~~--------- 102 (666)
..+++.. .+..++.+++.+++.|++... . +.|..|+++|+.++...++.. .+.....+..+...
T Consensus 168 ~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~s~s~~k~ 246 (799)
T KOG1737|consen 168 PLIAVEQT-SEYENENKSVMTKRIPLSIAVISVAQETREINVDVLRLLSSLPNLTGQLLLRELNALLEDKKEQSSSKSKL 246 (799)
T ss_pred cchhhhcc-ccccccccccccccccchhhhhcccccchhhhhhhhhhccccccchhhhhhhhhccccccccccccchhhh
Confidence 5566666 889999999999999999885 3 789999999999999988643 11112211222222
Q ss_pred --cHHHHHHhhhhcccchhhHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHHhHHHhccccCccCCCCCccccccccc
Q 042453 103 --STVRLKKRLVDEGVGENLVKDCEQIMLSEFNEIQGQFKVLCEERSNLLDTIRQLEAANIEADASGTPDGEYQLSKHEF 180 (666)
Q Consensus 103 --s~~~l~~rl~e~~~~~~~ik~~e~~~~~e~~~~~~~~~~~~~~~~~lld~l~~le~~~~~~~~t~~~~~~~~~~~~~~ 180 (666)
.++++..|++..++....+++||+++++++...|.++....+++..|++++++|+..+.+++..+......+......
T Consensus 247 ~~~~e~~~~k~~~s~~s~~a~~~~e~~~~s~~~~~s~~s~~~~~q~~~l~~~l~~le~q~~~le~a~~~~~~~~~~~~~~ 326 (799)
T KOG1737|consen 247 QERTERIALKVLTSLASVFAECDDEAELLSQSRIESDASHSESEQRIRLQEALSALENQNTDLEVALRRAHAAQAALDLS 326 (799)
T ss_pred HHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhHhhhhhhcchhhhhhhhhhHHHHHHhhhhhHHHHHhHhhhhhhccCcc
Confidence 367889999999999999999999999999999999999999999999999999988777655544333222211000
Q ss_pred cccCCCcCCCCCcCCCCccccccccccccCccccccccccCccCC---CCCccc---Cc-cccc-ccchhhhhhcccc-c
Q 042453 181 SNLGRGKYSECSTTESSDDIEKQELEEVSDDDEISFYDTREFFTE---PSVSCR---PV-KEVT-NHAREEEQLGNTF-N 251 (666)
Q Consensus 181 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~e~~f~da~~~~~~---~~~~~~---~~-~~~~-~~~~~~~~~~~~~-~ 251 (666)
. .+. . +.++ .+...+.++++.+||||.+..+. +..+.. .. ++.. .-.+..+..+..- .
T Consensus 327 ~---------~~~-~-~~~~--~~~~~~~~~e~~e~~da~s~~s~~~~~~~s~~~~e~~~s~~~~s~~s~~~~~~~~~~~ 393 (799)
T KOG1737|consen 327 K---------VTR-L-SLLH--EEESFSESDELTEQFDAESSLSDAQESLDSNSESENEGSEDEESYTSDISDNGSSDAL 393 (799)
T ss_pred c---------ccc-c-cccc--cccccccccccccccccccccchhhhccCCcccccccccccccccccccccCCCcccc
Confidence 0 000 0 0010 12233334556789999886531 000100 00 0000 0000000000000 0
Q ss_pred CCcccccc----ccccCCCCCCccccccCCCcccccccchhHHHhhhccCCCCccccccccccccCChhhhhhhcccchH
Q 042453 252 TSEKMYDE----KEKCDSRYPNIERRKKLPDPVEKERGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSY 327 (666)
Q Consensus 252 ~~~~~~~~----~~~~~~~~~~~~~R~~lP~~~e~~~~vslwsilK~~iGkDLtkIslPv~~~EP~S~LQr~~e~~ey~~ 327 (666)
..+..... .......++..+||++||+|..++.+++||+|||++||||||+|+|||.||||+|+|||++|+|||++
T Consensus 394 ~~d~~~~~~~~~~~~~~~~~~~~~rr~~lp~~~~~~~~islw~~~k~~iGkDlskv~~PV~~nEP~S~LQr~~EdlEYs~ 473 (799)
T KOG1737|consen 394 SADGDKSSQALNEKVPSGSGAEVARRTNLPAPSKPSSSISLWSILRNNIGKDLSKVSMPVEFNEPLSLLQRVAEDLEYSE 473 (799)
T ss_pred ccccccccccccccccccccccccccccCCCCcCcCCCccHHHHHhhcccccccccccceecCCcchHHHHhhhhccchh
Confidence 00000000 00001125567999999999889999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcCCCCCHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCCCeEEEEecCCCeEEEeeecccCCceeeEEEeCCcE
Q 042453 328 LLDRAYEYGKAGNSLLRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPEKGVRFFSEKVSHHPTVIACHCEGKGW 407 (666)
Q Consensus 328 lLd~Aa~~~~~~dp~eRm~~V~aF~vS~y~~~~~r~kKPfNPILGETFe~~~~d~g~rfiaEQVSHHPPIsAf~~e~~g~ 407 (666)
|||+|++ .+||++||++|+||++|+|+.+..|.+|||||||||||||+++|+|+|||+|||||||||+|||||+++|
T Consensus 474 LLd~A~~---~~d~~~R~~~vaafavS~Ya~t~~r~~KPFNPlLgETyE~~r~dkg~rf~sEqVSHhPPi~A~h~es~~w 550 (799)
T KOG1737|consen 474 LLDKAAN---YEDPLERMVYVAAFAVSSYSSTSRRTAKPFNPLLGETYEMDRPDKGLRFFSEQVSHHPPISACHAESNNW 550 (799)
T ss_pred hhHHHHh---cCCcHHHHHHHHHHHhhhcchhcccccCCCCcccccceEeeccCCceeeeeeeeccCCCcccccccCCCc
Confidence 9999998 4689999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeeEEEEEeEEEEEEeeEEEEEecC-CcEEEEeeeeeeeeeeeeceeeEeecceEEEEcCCcc--eEEEeeeec
Q 042453 408 KFWGDSNLRTKFWGRSIQLDPVGVLTVEFDD-GEVFQWSKVTTSIYNLILGKIYCDHHGTMEIHGNCQY--SCKLKFKEQ 484 (666)
Q Consensus 408 ~~~G~~~~kskF~G~Si~v~~~G~~~l~f~~-gE~Y~~~~p~~~i~nli~G~~~ie~~G~~~I~~~tg~--~a~i~Fk~k 484 (666)
.|||++.+++||||+||+|.|.|.++|+|++ |++|+|.+|+++|+|||+|++|+|++|.|.|++++.+ .|.|+|++.
T Consensus 551 ~~~~ds~~~sKF~Gksi~v~P~G~l~l~~~~~G~~~~w~kvtt~v~nii~Gk~~~D~~ge~~i~n~~~~~~~c~L~F~~~ 630 (799)
T KOG1737|consen 551 TFWGDSKVKSKFWGKSIEVPPLGILHVTLKNIGEHYSWAKVTTTVHNIILGKLWVDHYGEMEITNHTTGSDKCKLKFVKA 630 (799)
T ss_pred eeeccccccccccccceeecCCceEEEEEcCCCccccccCccceecceeeccccccccccEEEecCCCCcceeEEEEeee
Confidence 9999999999999999999999999999997 9999999999999999999999999999999998544 599999999
Q ss_pred ccccCCCceEEEEEEccCCcEEEEEEeEECceEEEEeCCCCCcccCCCCCCCCeeEeecCCCCccccccccccceeeccc
Q 042453 485 SILDRNPHQVNGFVEDVLGKKVATLFGKWDNSMYYISGDGSGKLKDGNVSPDASLLWKSNKAPLNLTRYNLTSFAITLNE 564 (666)
Q Consensus 485 ~~~g~~~~~V~G~I~d~~gk~~~~i~G~Wd~~i~~~~~~~~~k~k~~~~~~~~~~lW~~~~~~~~~~~y~~t~fa~~LNe 564 (666)
|||+++.++|.|.|+|.+|++++++.|+|++.|++..++..+ ...+.....++|++++.|++ .+|+||.||++||+
T Consensus 631 ~~~~~~~~ev~g~V~~~s~~~~~~l~GkW~e~~~~~~~~~~~---~~~~~~~~~~iWk~~~~Pkn-~~y~ft~fai~LNe 706 (799)
T KOG1737|consen 631 GYFSRNAREVEGSVRNKSGKKVEVLTGKWDESLYYFKVDKVG---LPEPETSEKLIWKANDLPKN-NKYNFTGFAIELNE 706 (799)
T ss_pred cccCCCcceeEEEEeCCCCceeEEEeeeehhhhhhccccccc---cccCCccceeeeecCCCCCC-cccccchhheeccc
Confidence 999999999999999999999999999999999997665432 22334567899999999998 89999999999999
Q ss_pred CCccccCCCCCCCCCChhhhhhhhcCChhHHHHHHHHHHHHHHHHHHhhc---CCCCcceeEecCCCC-eeEEcCChhhh
Q 042453 565 LTPGLQEKLPPTDSRLRPDQRHLENGEYEKANAEKQRLERRQRMSRKLQE---NGWKPRWFRREGENG-SFRYVGGYWEA 640 (666)
Q Consensus 565 l~p~l~~~l~PTDSR~RpD~raLe~Gd~d~A~~eK~rLEekQR~~RK~re---~~w~Pr~F~~~~~~~-~w~y~g~Ywe~ 640 (666)
++|.+.+.|||||||+|||||+||+|+|++|+.||.||||+||++|+.|+ ..|+||||.+..+.. .|+|+|+|||+
T Consensus 707 l~p~l~~~lpPTDSRlRPDqr~lE~G~~~~a~~EK~rlEe~QR~~r~~re~~~~~~~prwF~~~~~~~~~~~~ng~Ywe~ 786 (799)
T KOG1737|consen 707 LTPHLKKLLPPTDSRLRPDQRALENGEYDEANAEKLRLEEKQRARRRKREENGEEYEPRWFEKVKDPSTYWVYNGGYWEA 786 (799)
T ss_pred CCchhhccCCCCCcccCcchhhhhccChhhhhhhhHhHHHHHHHHHHHHHhhccccccccccccCCCcceEEecCchhee
Confidence 99999999999999999999999999999999999999999999988765 359999999998765 79999999999
Q ss_pred hhcCCCCCCCCcc
Q 042453 641 REQLKWDECPNIF 653 (666)
Q Consensus 641 r~~~~w~~~~dif 653 (666)
|++++|..|+|||
T Consensus 787 r~~~d~~~~~~if 799 (799)
T KOG1737|consen 787 REKQDWKDCPDIF 799 (799)
T ss_pred ecccCccccccCC
Confidence 9999999999998
No 2
>KOG2209 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-105 Score=810.05 Aligned_cols=380 Identities=40% Similarity=0.776 Sum_probs=350.7
Q ss_pred CCCccccccCCCcccccccchhHHHhhhccCCCCccccccccccccCChhhhhhhcccchHhHHHHhhcCCCCCHHHHHH
Q 042453 267 YPNIERRKKLPDPVEKERGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEYGKAGNSLLRIL 346 (666)
Q Consensus 267 ~~~~~~R~~lP~~~e~~~~vslwsilK~~iGkDLtkIslPv~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~~~~dp~eRm~ 346 (666)
..-.+.|++||+|+-....+|||+|||+||||||++|+|||+||||+|+|||++|.|+|.+||.+|+. ..||++||.
T Consensus 23 ~~~hk~RT~LPa~m~sr~d~SIW~Ilr~ciGkelSkiTmPV~~NEPLSFLQRltEyme~~yLi~kAs~---~~~p~eRmq 99 (445)
T KOG2209|consen 23 NGIHKHRTSLPAPMFSRNDFSIWSILRKCIGKELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASS---QSDPVERMQ 99 (445)
T ss_pred hhhhhhcccCCccccccccccHHHHHHhhhchhhhheeeeeeeCCcHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHH
Confidence 34457999999999999999999999999999999999999999999999999999999999999997 579999999
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCCCCCeEEEEecCCCeEEEeeecccCCceeeEEEe--CCcEEEEEEeeeeEEEEEeEE
Q 042453 347 NVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPEKGVRFFSEKVSHHPTVIACHCE--GKGWKFWGDSNLRTKFWGRSI 424 (666)
Q Consensus 347 ~V~aF~vS~y~~~~~r~kKPfNPILGETFe~~~~d~g~rfiaEQVSHHPPIsAf~~e--~~g~~~~G~~~~kskF~G~Si 424 (666)
+|+|||||+.++...|.-|||||||||||++.+.|-|+|||||||||||||||||+| ++.+.|.|.+.++-||||+||
T Consensus 100 yVAAFAvsavas~weR~gKPFNPLl~et~el~r~dlg~R~i~EQVSHHPPiSAfhaEgl~~dF~fhGsi~PklkFWgksv 179 (445)
T KOG2209|consen 100 YVAAFAVSAVASQWERTGKPFNPLLGETYELEREDLGFRFISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSV 179 (445)
T ss_pred HHHHHHHHHHHHhHHHhcCCCcchhhhhhhheecccceEEeehhhccCCChhHhhhcccCcceEEeeeecccceecccee
Confidence 999999999999888999999999999999999999999999999999999999999 578999999999999999999
Q ss_pred EEEEeeEEEEEecC-CcEEEEeeeeeeeeeeeeceeeEeecceEEEEcC-CcceEEEeeeecccccCCCceEEEEEEccC
Q 042453 425 QLDPVGVLTVEFDD-GEVFQWSKVTTSIYNLILGKIYCDHHGTMEIHGN-CQYSCKLKFKEQSILDRNPHQVNGFVEDVL 502 (666)
Q Consensus 425 ~v~~~G~~~l~f~~-gE~Y~~~~p~~~i~nli~G~~~ie~~G~~~I~~~-tg~~a~i~Fk~k~~~g~~~~~V~G~I~d~~ 502 (666)
++.|.|.++|+|.. ||.|+|+.|+++|||||+|++|||.+|+|.|.++ +|+.|++.|+++|+||++.|+|+|.|+|++
T Consensus 180 ea~Pkgtitle~~k~nEaYtWtnp~CcvhNiIvGklwieqyg~~eI~nh~Tg~~~vl~Fk~~G~~gk~lHkVEG~i~d~~ 259 (445)
T KOG2209|consen 180 EAEPKGTITLELLKHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGHKCVLNFKPCGLFGKELHKVEGHIQDKS 259 (445)
T ss_pred ecCCCceEEEEecccCcceeccCCcceeeeehhhhhhHhhcCcEEEEecCccceeEEecccccccccchhheeehhhccc
Confidence 99999999999974 9999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred CcEEEEEEeEECceEEEEeCCC-----------C-----Cc------ccC---------CCCCCCCeeEeecCCCCccc-
Q 042453 503 GKKVATLFGKWDNSMYYISGDG-----------S-----GK------LKD---------GNVSPDASLLWKSNKAPLNL- 550 (666)
Q Consensus 503 gk~~~~i~G~Wd~~i~~~~~~~-----------~-----~k------~k~---------~~~~~~~~~lW~~~~~~~~~- 550 (666)
.++++.|.|+|++.++.+...+ . ++ ..+ +...++..+||..++.|++.
T Consensus 260 k~kl~~lYGkWTe~l~~cd~esf~~~~Kq~~r~~~~r~~s~~~~~see~dd~P~~ds~~v~~iPgSk~LW~~n~rP~n~~ 339 (445)
T KOG2209|consen 260 KKKLCALYGKWTECLYSCDPESFDAFKKQDKRNTEERKNSKQMSTSEELDDMPVPDSESVFIIPGSKLLWRINPRPPNSA 339 (445)
T ss_pred cccchhhhccHHHHHhcCCHHHHHHHHHhhhhcchhhhhhccCCchhhccCCCCCCcceeEecCCCeEEEEecCCCCCHH
Confidence 9999999999999988764321 0 00 000 01135778999999988876
Q ss_pred cccccccceeecccCCccccCCCCCCCCCChhhhhhhhcCChhHHHHHHHHHHHHHHHHHHhh---cCCCCcceeEecCC
Q 042453 551 TRYNLTSFAITLNELTPGLQEKLPPTDSRLRPDQRHLENGEYEKANAEKQRLERRQRMSRKLQ---ENGWKPRWFRREGE 627 (666)
Q Consensus 551 ~~y~~t~fa~~LNel~p~l~~~l~PTDSR~RpD~raLe~Gd~d~A~~eK~rLEekQR~~RK~r---e~~w~Pr~F~~~~~ 627 (666)
.+|+||.|+++|||+.++++..+||||||+|||++|||+|++|.|.++|+||||+||++||.| +..|+||||++.++
T Consensus 340 ~~y~FT~FalsLNem~~~M~~tl~pTD~RlRpDi~~mE~G~~D~AseeK~rlEEkQRe~Rk~rs~~~~dw~~rWF~~~~n 419 (445)
T KOG2209|consen 340 QMYNFTSFALSLNEMDKGMESTLPPTDCRLRPDIRAMENGNIDQASEEKKRLEEKQREARKNRSKSEEDWKTRWFHQGPN 419 (445)
T ss_pred HhhchhhheeehhhhccCcccccCCcccccCchhhhhhcCCcchhHHHHHHHHHHHHHHHhhcccccccCcchhcccCCC
Confidence 589999999999999999999999999999999999999999999999999999999999988 45799999999764
Q ss_pred C----CeeEEcCChhhhhhcCCCCCCCCcc
Q 042453 628 N----GSFRYVGGYWEAREQLKWDECPNIF 653 (666)
Q Consensus 628 ~----~~w~y~g~Ywe~r~~~~w~~~~dif 653 (666)
. ..|.|.||||+ +++++|||||
T Consensus 420 p~t~~~dWlYsGgYwd----R~ysn~~~i~ 445 (445)
T KOG2209|consen 420 PYTGAQDWLYSGGYWD----RNYSNCPDIY 445 (445)
T ss_pred CCCCcccceeecCccc----cccccCcccC
Confidence 3 35999999998 7899999998
No 3
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=100.00 E-value=3.1e-96 Score=791.51 Aligned_cols=343 Identities=48% Similarity=0.902 Sum_probs=266.6
Q ss_pred hhHHHhhhccCCCCccccccccccccCChhhhhhhcccchHhHHHHhhcCCCCCHHHHHHHHHHHHHhhhcccCCCCCCC
Q 042453 287 SLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEYGKAGNSLLRILNVAAFAVSGYASSEGRHCKP 366 (666)
Q Consensus 287 slwsilK~~iGkDLtkIslPv~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~~~~dp~eRm~~V~aF~vS~y~~~~~r~kKP 366 (666)
|||++||+++|||||+|+|||+||||+|+||+++++|+|++||++|++ .+||++||++|++|+||+|+.+..|++||
T Consensus 1 s~w~~lK~~~G~dLs~islPv~~~eP~S~Lqr~~~~~~y~~lL~~Aa~---~~d~~eR~~~V~~f~~S~~~~~~~~~~KP 77 (354)
T PF01237_consen 1 SIWSFLKQKIGKDLSRISLPVFFNEPRSFLQRLAEDFEYPDLLDKAAE---EDDPLERMLYVAAFALSSYSSTPGRTKKP 77 (354)
T ss_dssp HHHHHHHHT--S-GGGS---GGGEEEEEGGGGGGGGSSSHHHHHGGGG---S-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHhhhcCCCChhcCccCceecCCCcHHHhhhhhhhChHHHhccCC---CCCHHHHHHHHHHHHHhhhhhhcCCCCcC
Confidence 699999999999999999999999999999999999999999999987 68999999999999999999987788999
Q ss_pred CCCCCCCeEEEEecCCCeEEEeeecccCCceeeEEEeCCcEEEEEEeeeeEEEEEeEEEEEEeeEEEEEecC-CcEEEEe
Q 042453 367 FNPLLGETYEADYPEKGVRFFSEKVSHHPTVIACHCEGKGWKFWGDSNLRTKFWGRSIQLDPVGVLTVEFDD-GEVFQWS 445 (666)
Q Consensus 367 fNPILGETFe~~~~d~g~rfiaEQVSHHPPIsAf~~e~~g~~~~G~~~~kskF~G~Si~v~~~G~~~l~f~~-gE~Y~~~ 445 (666)
|||||||||++.++ +|++|+||||||||||||||++++||+++|+..+++||+|+||++.+.|.++|+|++ ||+|+|+
T Consensus 78 fNPiLGETfe~~~~-~~~~~~aEQVSHHPPisa~~~~~~~~~~~g~~~~~~kf~g~sv~~~~~G~~~i~f~~~~e~Y~~~ 156 (354)
T PF01237_consen 78 FNPILGETFELVRP-DGTRFIAEQVSHHPPISAFHAEGRGWKFYGHIEPKSKFWGNSVEVNPIGKVTITFPDGGETYTWT 156 (354)
T ss_dssp E---TT-EE--TT--T-EEEEEEEEETTTTEEEEEEEETTEEEEEEEEEEEEE-TT-EEEEEEEEEEEEET--TEEEEEE
T ss_pred cCCCCcceeeeccC-ceEEEEEecccCCCCceEEEEEcCCEEEEEEEeeeEEEeceEEEEEECCcEEEEEcCCceEEEEe
Confidence 99999999999888 799999999999999999999999999999999999999999999999999999997 6999999
Q ss_pred eeeeeeeeeeeceeeEeecceEEEEcC-CcceEEEeeeecccccCCCceEEEEEEccCCcEEEEEEeEECceEEEEeCCC
Q 042453 446 KVTTSIYNLILGKIYCDHHGTMEIHGN-CQYSCKLKFKEQSILDRNPHQVNGFVEDVLGKKVATLFGKWDNSMYYISGDG 524 (666)
Q Consensus 446 ~p~~~i~nli~G~~~ie~~G~~~I~~~-tg~~a~i~Fk~k~~~g~~~~~V~G~I~d~~gk~~~~i~G~Wd~~i~~~~~~~ 524 (666)
+|++.|+||++|++|+|++|+|+|+|. +|++|+|.|+++|+|+++.|.|+|.|++.+|+++++|.|+||+.|+++....
T Consensus 157 ~p~~~i~gi~~G~~~~e~~G~~~i~~~~tg~~~~i~f~~~~~f~~~~~~v~G~I~~~~~~~~~~i~G~W~~~i~~~~~~~ 236 (354)
T PF01237_consen 157 KPTTYIRGIIFGKRYIEHVGKMVITCHKTGLKAEIEFKPKGWFSGKSNEVEGKIYDSKGKPIYKISGKWDEEIYIKDVKN 236 (354)
T ss_dssp --SEEEESTTTTS-EEEEESEEEEEET-TS-EEEEEEETSSSTSSSTTEEEEEEESSGGG-SEEEEEETTSEEEEEETT-
T ss_pred cCcEEEeeeecccEEEEecCCEEEEcCCcceEEEEEEecCCcccccceeeEEEEEEccCceeEEeeeeeCCeEEEEeccc
Confidence 999999999999999999999999998 8999999999999999999999999999889999999999999999987552
Q ss_pred CCcccCCCCCCCCeeEeecCCCCccc-cccccccceeecccCCccccCCCCCCCCCChhhhhhhhcCChhHHHHHHHHHH
Q 042453 525 SGKLKDGNVSPDASLLWKSNKAPLNL-TRYNLTSFAITLNELTPGLQEKLPPTDSRLRPDQRHLENGEYEKANAEKQRLE 603 (666)
Q Consensus 525 ~~k~k~~~~~~~~~~lW~~~~~~~~~-~~y~~t~fa~~LNel~p~l~~~l~PTDSR~RpD~raLe~Gd~d~A~~eK~rLE 603 (666)
.. ..++..++|++++.+... .+|+||.|+++||++++.+.+.++|||||+|||++||++||+++|+++|.+||
T Consensus 237 ~~------~~~~~~~lw~~~~~~~~~~~~~~ft~fa~~LNe~~~~~~~~~~ptDSr~R~d~~al~~gd~~~A~~eK~~lE 310 (354)
T PF01237_consen 237 DS------DTGESKLLWDANPLPPNPKKYYGFTQFAIPLNELTPELEEKLPPTDSRWRPDQRALENGDIDKAQEEKKRLE 310 (354)
T ss_dssp ---------GGGEEEEEETTTS-SS--B----------G-------G-GS-TTBHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred cc------cCCCceEEEECCCCcccccceecccccccccccccccccccCCchhccchHHHHHHHcCCHHHHHHHHHHHH
Confidence 10 013568999999877655 57899999999999999887799999999999999999999999999999999
Q ss_pred HHHHHHHHhhc---CCCCcceeEecCC----CCeeEEcCChhh
Q 042453 604 RRQRMSRKLQE---NGWKPRWFRREGE----NGSFRYVGGYWE 639 (666)
Q Consensus 604 ekQR~~RK~re---~~w~Pr~F~~~~~----~~~w~y~g~Ywe 639 (666)
++||++||+|+ ..|+||||.++.+ ...|+|+|+||+
T Consensus 311 e~QR~~rk~R~~~~~~w~Pr~F~~~~d~~~~~~~w~~~g~YW~ 353 (354)
T PF01237_consen 311 EKQRADRKERKEKGEEWKPRWFEKVEDPSTEEEEWVYKGGYWE 353 (354)
T ss_dssp HHHHHHHHHHHHCT--GGGSSEEEEE-SSS--T----------
T ss_pred HHHHHHHHHHHHcCCCccCCeEEECCCCCCccccccccccccC
Confidence 99999999875 5799999998743 347999999998
No 4
>KOG2210 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-65 Score=549.21 Aligned_cols=327 Identities=26% Similarity=0.389 Sum_probs=281.6
Q ss_pred chhHHHhhh-ccCCCCccccccccccccCChhhhhhhcccchHhHHHHhhcCCCCCHHHHHHHHHHHHHhhhcccCCCCC
Q 042453 286 VSLWSMIKD-NVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYEYGKAGNSLLRILNVAAFAVSGYASSEGRHC 364 (666)
Q Consensus 286 vslwsilK~-~iGkDLtkIslPv~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~~~~dp~eRm~~V~aF~vS~y~~~~~r~k 364 (666)
..+|.++++ .+|+|||+|+||+|++||+|+||++++.+.+++||-.|.. .+||++||+.|++||+|+|+..+...+
T Consensus 35 s~i~~L~sq~rpg~DLs~v~LPtfile~rs~Le~~~~~~~~~dll~~~~~---~~~p~~R~~~VvkwylS~~~~~~~~~~ 111 (392)
T KOG2210|consen 35 SIILDLLSQLRPGMDLSRVVLPTFILEPRSLLEKYTDFSYHPDLLLEASS---EADPLERMLAVVKWYLSGFHAGPKGRK 111 (392)
T ss_pred ceeecHhhhccCCCCcccccchhhhhhhHHHHHHhhhhhhccchhccccc---CCCHHHHhhhheeeeehhccccccccc
Confidence 347888877 9999999999999999999999999999988998887775 789999999999999999999988888
Q ss_pred CCCCCCCCCeEEEEec-----C-CCeEEEeeecccCCceeeEEEeC--CcEEEEEEeeeeEEEEEeEEEEEEeeEEEEEe
Q 042453 365 KPFNPLLGETYEADYP-----E-KGVRFFSEKVSHHPTVIACHCEG--KGWKFWGDSNLRTKFWGRSIQLDPVGVLTVEF 436 (666)
Q Consensus 365 KPfNPILGETFe~~~~-----d-~g~rfiaEQVSHHPPIsAf~~e~--~g~~~~G~~~~kskF~G~Si~v~~~G~~~l~f 436 (666)
|||||||||||.|+|. + ..+.|+||||||||||||||++. +|+++.|++.++++|.|+||.|.+.|..+|+|
T Consensus 112 ~PyNPILGEtF~~~w~~~~~p~~~~~~~iAEQVSHHPPvSAf~~~~~~~~i~v~g~v~~kSkF~G~s~~V~~~G~~~l~l 191 (392)
T KOG2210|consen 112 KPYNPILGETFTCHWKYPPHPSKGDTVFVAEQVSHHPPVSAFYVTCPKKGIQVDGHVWAKSKFLGNSIAVAMIGKGVLKL 191 (392)
T ss_pred CCCCccchhhcccccccCCCCCCceEEEEeecccCCCCcceeeEEccccCeEEEEEEeecccccccceeEEEcCCcEEEE
Confidence 8999999999999982 2 34789999999999999999864 69999999999999999999999999999998
Q ss_pred cC-CcEEEEeeeeeeeeeeeeceeeEeecceEEEEcC-CcceEEEeeeecccccCCCceEEEEEEccC-CcEEEEEEeEE
Q 042453 437 DD-GEVFQWSKVTTSIYNLILGKIYCDHHGTMEIHGN-CQYSCKLKFKEQSILDRNPHQVNGFVEDVL-GKKVATLFGKW 513 (666)
Q Consensus 437 ~~-gE~Y~~~~p~~~i~nli~G~~~ie~~G~~~I~~~-tg~~a~i~Fk~k~~~g~~~~~V~G~I~d~~-gk~~~~i~G~W 513 (666)
.+ +|+|.+++|.++++|+++|.+|+|++|.+.|.|+ +++++.+.|+.++|+|+..+.+.|.|+... .+..+.|+|+|
T Consensus 192 l~~~E~Y~~t~P~~~~rg~~~~~p~velggkv~I~c~kt~~~a~~~~~~~~f~g~~~s~~~~~ik~~~~~~~~~~i~G~W 271 (392)
T KOG2210|consen 192 LDHDETYLITFPNAYARGILLGAPWVELGGKVVIECPKTGLSAILESILKPFLGGKNSFNARSIKGPIDKKDFCSISGEW 271 (392)
T ss_pred EecCcceeeccCCceeeeeeeccceEecCceEEEEcCCcceeeeEeeccCcccccccccceEEEEcccccccccccceee
Confidence 75 9999999999999999999999999999999997 799999999999999999999999999654 34567799999
Q ss_pred CceEEEEeCCCCCcccCCCCCCCCeeEeecCCCCccccccccccceeecccCCccccCCCCCCCCCC--hhhhhhhhcCC
Q 042453 514 DNSMYYISGDGSGKLKDGNVSPDASLLWKSNKAPLNLTRYNLTSFAITLNELTPGLQEKLPPTDSRL--RPDQRHLENGE 591 (666)
Q Consensus 514 d~~i~~~~~~~~~k~k~~~~~~~~~~lW~~~~~~~~~~~y~~t~fa~~LNel~p~l~~~l~PTDSR~--RpD~raLe~Gd 591 (666)
|+.|+++..++. +...+-+....+... ...+.| +.+-|.+||+ +++++||..||
T Consensus 272 ~~~~~~k~~~~~----------~~~~~~d~~~~~~~~-------------~~v~pL-eEQ~e~ESrrlWk~Vt~ai~~~d 327 (392)
T KOG2210|consen 272 DGVMYAKYAKSG----------ESRNFVDCKKLPVTK-------------PKVRPL-EEQGEYESRRLWKEVTEAILAGD 327 (392)
T ss_pred cccEEEEEcCCC----------ceeecccccccCcCC-------------CCcCCh-HHcCcHHHHHHHHHHHHHHHhcc
Confidence 999999876541 112222222222110 012223 4567899997 68999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc---CCCCcceeEecCCCCeeEEcCChhh
Q 042453 592 YEKANAEKQRLERRQRMSRKLQE---NGWKPRWFRREGENGSFRYVGGYWE 639 (666)
Q Consensus 592 ~d~A~~eK~rLEekQR~~RK~re---~~w~Pr~F~~~~~~~~w~y~g~Ywe 639 (666)
++.|+++|..||++||++||.|+ ..|+||||+.+..++.|.|...-|.
T Consensus 328 ~~~Ate~K~~iEe~QR~~ak~ree~g~~W~pk~F~~~~~~~~~~~~~~~~~ 378 (392)
T KOG2210|consen 328 IEQATEEKFELEEKQRELAKKREESGEEWKPKLFKVDEDGGDWDYRNYLPK 378 (392)
T ss_pred HHHHhHHHhHHHHHHHHHHHHHHHhCCcceecceeEcCCCCCccccccccC
Confidence 99999999999999999988775 4699999999988888999865443
No 5
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.46 E-value=1.9e-13 Score=120.57 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=68.8
Q ss_pred cccceeeeeeeecCCCceeEEeccCC---ccceeEEeeeeEEeecCCCCccEEEEeCC-cEEEEEcCChhhHHHHHHHHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVGS---LAFGDLEGIISSFRESKSDDRRFYIFTAT-KTLHLRTNSRRDRVAWIQALV 78 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~~---~~~G~i~L~~a~i~~~~~d~~~f~i~~~~-~~~~lra~~~~~r~~Wi~al~ 78 (666)
|-+||-|-||| ..+.|+||++++. .++|.|.|+.|.|..++.|..+|.|.+++ +||||+|+|++||++||+||+
T Consensus 12 ~k~Wk~RwFvL--~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~ 89 (91)
T cd01247 12 INGWQDRYFVL--KEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHEFDENRFDISVNENVVWYLRAENSQSRLLWMDSVV 89 (91)
T ss_pred cCCCceEEEEE--ECCEEEEEecCccCcCCCcEEEECcccEEEcCCCCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHh
Confidence 67999999999 4799999999885 36899999999999999999999998776 999999999999999999997
Q ss_pred H
Q 042453 79 S 79 (666)
Q Consensus 79 ~ 79 (666)
.
T Consensus 90 ~ 90 (91)
T cd01247 90 R 90 (91)
T ss_pred h
Confidence 4
No 6
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.40 E-value=1e-12 Score=115.26 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=72.0
Q ss_pred cccceeeeeeeecCCCceeEEeccCC-ccceeEEeeeeEEeecCCCCccEEEEeCCcEEEEEcCChhhHHHHHHHHHHHh
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVGS-LAFGDLEGIISSFRESKSDDRRFYIFTATKTLHLRTNSRRDRVAWIQALVSTR 81 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~~-~~~G~i~L~~a~i~~~~~d~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~~~ 81 (666)
.-||+-|-|||++..+.|+||.++.+ ..+|+|.|..|+|-.++ +.++|.|.+|+.+|||+|.|.++.++||.||+.|+
T Consensus 11 lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~-~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a~ 89 (89)
T PF15409_consen 11 LQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK-KSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKAK 89 (89)
T ss_pred CCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC-CCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhcC
Confidence 45899999999999999999997765 89999999999887765 78999999999999999999999999999999885
No 7
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.34 E-value=4.1e-12 Score=112.87 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=72.3
Q ss_pred cccceeeeeeeecCCCceeEEeccC-CccceeEEeeeeEEeecCCC-CccEEEEeCCcEEEEEcCChhhHHHHHHHHHHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVG-SLAFGDLEGIISSFRESKSD-DRRFYIFTATKTLHLRTNSRRDRVAWIQALVST 80 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~-~~~~G~i~L~~a~i~~~~~d-~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~~ 80 (666)
+.+||=|-|||....+.|.||+.+. ..|.|.|.|..|++..+..+ +..|.|.|+++++||+|+|++||+.||+||+.+
T Consensus 14 ~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 14 LRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPREEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCCCCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence 5689999999987778999999875 59999999999999888777 899999999999999999999999999999987
Q ss_pred h
Q 042453 81 R 81 (666)
Q Consensus 81 ~ 81 (666)
+
T Consensus 94 ~ 94 (95)
T cd01265 94 R 94 (95)
T ss_pred c
Confidence 4
No 8
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.08 E-value=3.7e-10 Score=102.38 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=63.6
Q ss_pred cceeeeeeeecCCCceeEEeccCC---ccceeEEeeeeEEeecC----------CCCccEEEEeCCcEEEEEcCChhhHH
Q 042453 5 DEKLRIFFELLTLPGSHFLSSVGS---LAFGDLEGIISSFRESK----------SDDRRFYIFTATKTLHLRTNSRRDRV 71 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~l~y~~~~~~---~~~G~i~L~~a~i~~~~----------~d~~~f~i~~~~~~~~lra~~~~~r~ 71 (666)
.||-|-||| +.+.|+||+++.+ .++|+|.|..+.+.+.. .+...|.|.+.++++||+|+|.+||+
T Consensus 20 nwKkRwFvL--~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~ 97 (106)
T cd01238 20 NYKERLFVL--TKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRK 97 (106)
T ss_pred CceeEEEEE--cCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHH
Confidence 799999999 4778999998864 79999999988776532 23567999999999999999999999
Q ss_pred HHHHHHHHH
Q 042453 72 AWIQALVST 80 (666)
Q Consensus 72 ~Wi~al~~~ 80 (666)
+||+||+.+
T Consensus 98 ~WI~ai~~~ 106 (106)
T cd01238 98 RWIKALKQV 106 (106)
T ss_pred HHHHHHHhC
Confidence 999999863
No 9
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.96 E-value=3.8e-09 Score=91.20 Aligned_cols=76 Identities=30% Similarity=0.315 Sum_probs=68.8
Q ss_pred cccceeeeeeeecCCCceeEEeccCC---ccceeEEeeeeEEeecCCCCccEEEEeCC-cEEEEEcCChhhHHHHHHHHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVGS---LAFGDLEGIISSFRESKSDDRRFYIFTAT-KTLHLRTNSRRDRVAWIQALV 78 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~~---~~~G~i~L~~a~i~~~~~d~~~f~i~~~~-~~~~lra~~~~~r~~Wi~al~ 78 (666)
..+|+=|-||+. .+.|.||.++.. .+.|.|.|..+.|..++.++..|.|.+.. ++++|+|+|.+|+.+||.||+
T Consensus 12 ~~~W~~r~~vl~--~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~ 89 (91)
T cd01246 12 LKGWQKRWFVLD--NGLLSYYKNKSSMRGKPRGTILLSGAVISEDDSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALE 89 (91)
T ss_pred CCCceeeEEEEE--CCEEEEEecCccCCCCceEEEEeceEEEEECCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHH
Confidence 357888999986 789999999874 79999999999999988889999999887 999999999999999999998
Q ss_pred HH
Q 042453 79 ST 80 (666)
Q Consensus 79 ~~ 80 (666)
+|
T Consensus 90 ~a 91 (91)
T cd01246 90 LA 91 (91)
T ss_pred hC
Confidence 75
No 10
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.91 E-value=4.1e-09 Score=96.53 Aligned_cols=77 Identities=29% Similarity=0.268 Sum_probs=51.6
Q ss_pred cccceeeeeeeecCCCceeEEec--------------cCCccceeEEeee-----eE----EeecCCCCccEEEEeCCcE
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSS--------------VGSLAFGDLEGII-----SS----FRESKSDDRRFYIFTATKT 59 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~--------------~~~~~~G~i~L~~-----a~----i~~~~~d~~~f~i~~~~~~ 59 (666)
..|||=|-|+|+- .+.|+||+. ..--+.|.+.... +. -.....+.+.|+|+|++||
T Consensus 13 ~kgWk~RwFiL~k-~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~T~~kt 91 (112)
T PF15413_consen 13 GKGWKKRWFILRK-DGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKVFSIFTPTKT 91 (112)
T ss_dssp -S--EEEEEEEE--TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEEEEEE-SS-E
T ss_pred CcCccccEEEEEe-CCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCCcEEECCCcE
Confidence 5799999999998 899999998 2223333332111 11 1245678899999999999
Q ss_pred EEEEcCChhhHHHHHHHHHHH
Q 042453 60 LHLRTNSRRDRVAWIQALVST 80 (666)
Q Consensus 60 ~~lra~~~~~r~~Wi~al~~~ 80 (666)
|||+|++.+||.+||+||++|
T Consensus 92 ~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 92 FHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHH-
T ss_pred EEEEECCHHHHHHHHHHHHhC
Confidence 999999999999999999986
No 11
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.88 E-value=8.7e-09 Score=91.38 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=65.7
Q ss_pred cccceeeeeeeecCCCceeEEeccC-CccceeEEeeeeEEeecCC----------CCccEEEEeCCcEEEEEcCChhhHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVG-SLAFGDLEGIISSFRESKS----------DDRRFYIFTATKTLHLRTNSRRDRV 71 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~-~~~~G~i~L~~a~i~~~~~----------d~~~f~i~~~~~~~~lra~~~~~r~ 71 (666)
+..||=|-|||..+.+.|.||++.. ..++|.|.|+.+....... ....|.|.+.++++||.|++.+|++
T Consensus 12 ~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~ 91 (101)
T cd01235 12 LKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQ 91 (101)
T ss_pred CCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHH
Confidence 4579999999998888999999766 6999999999765544321 2345888899999999999999999
Q ss_pred HHHHHHHHHh
Q 042453 72 AWIQALVSTR 81 (666)
Q Consensus 72 ~Wi~al~~~~ 81 (666)
.||+||++++
T Consensus 92 ~Wi~ai~~~i 101 (101)
T cd01235 92 RWKEKIQQCI 101 (101)
T ss_pred HHHHHHHhhC
Confidence 9999999874
No 12
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.87 E-value=1.1e-08 Score=92.41 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=64.4
Q ss_pred cccceeeeeeeecCCCceeEEeccC-CccceeEEeeee----EEeecC-----CCC-ccEEEEeCCcEEEEEcCChhhHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVG-SLAFGDLEGIIS----SFRESK-----SDD-RRFYIFTATKTLHLRTNSRRDRV 71 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~-~~~~G~i~L~~a----~i~~~~-----~d~-~~f~i~~~~~~~~lra~~~~~r~ 71 (666)
+..||-|-|||. .+.|.||+++. ..+.|.|-|..+ +|.+.. .+. ..|.|.|..+|++|.|+|.+||.
T Consensus 13 ~k~wkkRwFvL~--~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~ 90 (103)
T cd01251 13 TEGFKKRWFTLD--DRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRR 90 (103)
T ss_pred CCCceeEEEEEe--CCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHH
Confidence 467999999997 78999999875 589999999743 343321 122 28999999999999999999999
Q ss_pred HHHHHHHHHhHh
Q 042453 72 AWIQALVSTRSL 83 (666)
Q Consensus 72 ~Wi~al~~~~~~ 83 (666)
.||+||+.|+..
T Consensus 91 ~Wi~ai~~v~~~ 102 (103)
T cd01251 91 EWIAAFQNVLSR 102 (103)
T ss_pred HHHHHHHHHhcC
Confidence 999999999753
No 13
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.86 E-value=8.7e-09 Score=92.38 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=64.5
Q ss_pred ccceeeeeeeecCCCceeEEeccCCccceeEEeeeeEEeecCCCC-----ccEEEEeCCcEEEEEcCChhhHHHHHHHHH
Q 042453 4 EDEKLRIFFELLTLPGSHFLSSVGSLAFGDLEGIISSFRESKSDD-----RRFYIFTATKTLHLRTNSRRDRVAWIQALV 78 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~y~~~~~~~~~G~i~L~~a~i~~~~~d~-----~~f~i~~~~~~~~lra~~~~~r~~Wi~al~ 78 (666)
..||=|-|+|. ...|+||++++..+.|+|.|..+...+.-.++ --|.|-+..+||+|+|+|.+||.+||+||+
T Consensus 19 ~n~KkRwF~Lt--~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~ 96 (98)
T cd01244 19 LHFKKRYFQLT--TTHLSWAKDVQCKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALE 96 (98)
T ss_pred cCCceeEEEEC--CCEEEEECCCCCceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHh
Confidence 57999999987 77899999999999999999988776543332 258999999999999999999999999997
Q ss_pred HH
Q 042453 79 ST 80 (666)
Q Consensus 79 ~~ 80 (666)
.+
T Consensus 97 k~ 98 (98)
T cd01244 97 KQ 98 (98)
T ss_pred cC
Confidence 53
No 14
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.85 E-value=1.2e-08 Score=91.51 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=66.7
Q ss_pred cccceeeeeeeecCCCceeEEeccC-CccceeEEeeeeEEeecCCC------CccEEEEeCCcEEEEEcCChhhHHHHHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVG-SLAFGDLEGIISSFRESKSD------DRRFYIFTATKTLHLRTNSRRDRVAWIQ 75 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~-~~~~G~i~L~~a~i~~~~~d------~~~f~i~~~~~~~~lra~~~~~r~~Wi~ 75 (666)
+..||=|-|||. .+.|+||+++. ..+.|.|.|..+.|..++++ +..|.|.++.+|++|+|+|.+|+..||+
T Consensus 15 ~k~WkkRwfvL~--~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ 92 (100)
T cd01233 15 NSGWTRRFVVVR--RPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLY 92 (100)
T ss_pred CCCcEEEEEEEE--CCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHH
Confidence 356999999998 47999999987 58899999998888766553 5789999999999999999999999999
Q ss_pred HHHHH
Q 042453 76 ALVST 80 (666)
Q Consensus 76 al~~~ 80 (666)
||++.
T Consensus 93 ai~~~ 97 (100)
T cd01233 93 ALNPL 97 (100)
T ss_pred Hhhhh
Confidence 99875
No 15
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.64 E-value=1.1e-07 Score=85.61 Aligned_cols=76 Identities=21% Similarity=0.192 Sum_probs=64.1
Q ss_pred cccceeeeeeeecCCCceeEEeccCC--ccceeEEeeeeEEeecCCC-------CccEEEEeCCcEEEEEcCChhhHHHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVGS--LAFGDLEGIISSFRESKSD-------DRRFYIFTATKTLHLRTNSRRDRVAW 73 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~~--~~~G~i~L~~a~i~~~~~d-------~~~f~i~~~~~~~~lra~~~~~r~~W 73 (666)
+..|+=|-|+|. .+.|.||+.++. ++.|.|.|..+.......+ +..|.|.|..+|++|+|+|.++|++|
T Consensus 16 ~K~WkrRwF~L~--~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~W 93 (101)
T cd01264 16 IKRWKTRYFTLS--GAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEW 93 (101)
T ss_pred eecceeEEEEEe--CCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeCCHHHHHHH
Confidence 456888999987 677999988764 4569999999887766554 35799999999999999999999999
Q ss_pred HHHHHHH
Q 042453 74 IQALVST 80 (666)
Q Consensus 74 i~al~~~ 80 (666)
|++|+.|
T Consensus 94 I~~i~~a 100 (101)
T cd01264 94 LQCLNIA 100 (101)
T ss_pred HHHHHhh
Confidence 9999976
No 16
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.62 E-value=1.3e-07 Score=82.06 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=64.2
Q ss_pred cccceeeeeeeecCCCceeEEeccC---CccceeEEeeeeEEeecCCC---CccEEEEeCCcEEEEEcCChhhHHHHHHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVG---SLAFGDLEGIISSFRESKSD---DRRFYIFTATKTLHLRTNSRRDRVAWIQA 76 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~---~~~~G~i~L~~a~i~~~~~d---~~~f~i~~~~~~~~lra~~~~~r~~Wi~a 76 (666)
...|+=|-|+|. .+.|+||..+. ..+.|.|.|..++|.....+ ...|.|.+.+++++|+|+|.+|+++||.|
T Consensus 13 ~~~W~kr~~~L~--~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~a 90 (94)
T cd01250 13 NKEWKKRWFVLK--NGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISA 90 (94)
T ss_pred CCCceEEEEEEe--CCeEEEEcCCcccccccceEEeccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHH
Confidence 357999999987 77899998665 46789999998887766654 56899999999999999999999999999
Q ss_pred HHHH
Q 042453 77 LVST 80 (666)
Q Consensus 77 l~~~ 80 (666)
|+.+
T Consensus 91 l~~~ 94 (94)
T cd01250 91 IQES 94 (94)
T ss_pred HhcC
Confidence 9753
No 17
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.62 E-value=1.6e-07 Score=84.71 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=64.5
Q ss_pred cceeeeeeeecC----CCceeEEeccC------CccceeEEeeeeEEeecCCCCc---cEEEEeCCcEEEEEcCChhhHH
Q 042453 5 DEKLRIFFELLT----LPGSHFLSSVG------SLAFGDLEGIISSFRESKSDDR---RFYIFTATKTLHLRTNSRRDRV 71 (666)
Q Consensus 5 ~~~~~~~~~~~~----~~~l~y~~~~~------~~~~G~i~L~~a~i~~~~~d~~---~f~i~~~~~~~~lra~~~~~r~ 71 (666)
-|+=|-|||+-. +..|.||+++. ..|+|.|.|..|..+....|.+ .|.|.|...+|.|.|+|++|++
T Consensus 13 ~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~ 92 (101)
T cd01257 13 SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQD 92 (101)
T ss_pred CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHH
Confidence 477899999977 55799999874 6899999999998776655554 6999999999999999999999
Q ss_pred HHHHHHHH
Q 042453 72 AWIQALVS 79 (666)
Q Consensus 72 ~Wi~al~~ 79 (666)
.||+||.+
T Consensus 93 ~Wi~~i~~ 100 (101)
T cd01257 93 SWYQALLE 100 (101)
T ss_pred HHHHHHhh
Confidence 99999964
No 18
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.56 E-value=3e-07 Score=83.37 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=60.1
Q ss_pred cccceeeeeeeecCCCceeEE-ecc--CCccceeEEeeeeEEeecCCCC----ccEEEEeCCcEEEEEcCChhhHHHHHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFL-SSV--GSLAFGDLEGIISSFRESKSDD----RRFYIFTATKTLHLRTNSRRDRVAWIQ 75 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~-~~~--~~~~~G~i~L~~a~i~~~~~d~----~~f~i~~~~~~~~lra~~~~~r~~Wi~ 75 (666)
...||=|-|||. .+++.|| ..+ +..|.|+|.|..|....+..|. ..|.|.|...++||.|+|++|++.||+
T Consensus 21 ~K~WkrRWFvL~--~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~ 98 (104)
T cd01236 21 SKRWQRRWFILY--DHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLN 98 (104)
T ss_pred eccccceEEEEe--CCCEEEEeeCCCCCcccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHH
Confidence 357999999987 2345555 333 4589999999999988766542 469999999999999999999999999
Q ss_pred HHHH
Q 042453 76 ALVS 79 (666)
Q Consensus 76 al~~ 79 (666)
+|..
T Consensus 99 ~l~~ 102 (104)
T cd01236 99 MLMV 102 (104)
T ss_pred HHHh
Confidence 9864
No 19
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.54 E-value=2.7e-07 Score=81.57 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=62.2
Q ss_pred cceeeeeeeecCCCceeEEeccC-CccceeEEeeeeEEeecCC--CCccEEEEeCC-cEEEEEcCChhhHHHHHHHHHHH
Q 042453 5 DEKLRIFFELLTLPGSHFLSSVG-SLAFGDLEGIISSFRESKS--DDRRFYIFTAT-KTLHLRTNSRRDRVAWIQALVST 80 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~l~y~~~~~-~~~~G~i~L~~a~i~~~~~--d~~~f~i~~~~-~~~~lra~~~~~r~~Wi~al~~~ 80 (666)
-|+=|-|||. .+.|.||+.+. ..+.|.|.|..+.|....+ .+..|.|.+.. ++++|+|+|.+|+++||+||+.|
T Consensus 19 ~WkkrwfvL~--~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 19 KWARRWFVLK--GTTLYWYRSKQDEKAEGLIFLSGFTIESAKEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CceeEEEEEE--CCEEEEECCCCCCccceEEEccCCEEEEchhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 5999999987 57999998877 6899999999887765433 34468888777 99999999999999999999875
No 20
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.52 E-value=4.8e-07 Score=81.31 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=64.9
Q ss_pred ccceeeeeeeecCCCceeEEeccC---C---ccceeEEeeeeEEeecC--CCCccEEEEeCCcEEEEEcCChhhHHHHHH
Q 042453 4 EDEKLRIFFELLTLPGSHFLSSVG---S---LAFGDLEGIISSFRESK--SDDRRFYIFTATKTLHLRTNSRRDRVAWIQ 75 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~y~~~~~---~---~~~G~i~L~~a~i~~~~--~d~~~f~i~~~~~~~~lra~~~~~r~~Wi~ 75 (666)
..||-|-|||-.+ .|.||+++. + ..++.|.|....|...+ ..+..|.|.+.+++|+|.|+|++||.+||+
T Consensus 16 ~~~k~RyffLFnd--~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ 93 (101)
T cd01219 16 EKTEERYLFLFND--LLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQ 93 (101)
T ss_pred CCceeEEEEEeCC--EEEEEEcccccCCCcEEEEEEEecccEEEEeCCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHH
Confidence 4678899998655 999999652 2 56788999999888753 457889999999999999999999999999
Q ss_pred HHHHHhH
Q 042453 76 ALVSTRS 82 (666)
Q Consensus 76 al~~~~~ 82 (666)
||+.|++
T Consensus 94 ai~~~i~ 100 (101)
T cd01219 94 AIFSIID 100 (101)
T ss_pred HHHHHhh
Confidence 9999975
No 21
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=98.50 E-value=1.6e-07 Score=102.53 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=73.5
Q ss_pred cccceeeeeeeecCCCceeEEeccCCcccee---EEeeeeEEeecCCCCccEEEEeCCcEEEEEcCChhhHHHHHHHHHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVGSLAFGD---LEGIISSFRESKSDDRRFYIFTATKTLHLRTNSRRDRVAWIQALVS 79 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~~~~~G~---i~L~~a~i~~~~~d~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~ 79 (666)
|-||+=|.|++ ..++|.||.+..++-.|| |.|+.|.|..+++|.+||.|.++...|.|||.+.+.|+.|+++|+-
T Consensus 37 i~gwqdRyv~l--k~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEfDe~rfdIsvn~nv~~lra~~~~hr~~w~d~L~w 114 (611)
T KOG1739|consen 37 IHGWQDRYVVL--KNGALSYYKSEDETEHGCRGSICLSKAVITAHEFDECRFDISVNDNVWYLRAQDPDHRQQWIDALEW 114 (611)
T ss_pred cccccceEEEE--cccchhhhhhhhhhhcccceeeEeccCCcccccchhheeeeEeccceeeehhcCcHHHHHHHHHHHH
Confidence 67999999986 678999999999988888 9999999999999999999999999999999999999999999998
Q ss_pred HhH
Q 042453 80 TRS 82 (666)
Q Consensus 80 ~~~ 82 (666)
.+.
T Consensus 115 mk~ 117 (611)
T KOG1739|consen 115 MKT 117 (611)
T ss_pred Hhh
Confidence 876
No 22
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=98.46 E-value=7.5e-07 Score=80.86 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=61.3
Q ss_pred ccceeeeeeeecC-----CCceeEEeccC-CccceeEEeeeeEEeecC----CCCcc----EEEEeCCcEEEEEcCChhh
Q 042453 4 EDEKLRIFFELLT-----LPGSHFLSSVG-SLAFGDLEGIISSFRESK----SDDRR----FYIFTATKTLHLRTNSRRD 69 (666)
Q Consensus 4 ~~~~~~~~~~~~~-----~~~l~y~~~~~-~~~~G~i~L~~a~i~~~~----~d~~~----f~i~~~~~~~~lra~~~~~ 69 (666)
..||=|-|||.-. ...|.||+.+. ..+.|.|-|..+++.... ..+++ |.|.+..+++||.|+|.+|
T Consensus 17 ~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee 96 (108)
T cd01266 17 TKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEE 96 (108)
T ss_pred cCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHH
Confidence 4799999998732 23479999876 699999999998765432 22334 9999999999999999999
Q ss_pred HHHHHHHHHH
Q 042453 70 RVAWIQALVS 79 (666)
Q Consensus 70 r~~Wi~al~~ 79 (666)
++.||.||..
T Consensus 97 ~~~Wi~~I~~ 106 (108)
T cd01266 97 MTLWVNCICK 106 (108)
T ss_pred HHHHHHHHHh
Confidence 9999999965
No 23
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.43 E-value=1.1e-06 Score=81.65 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=65.2
Q ss_pred cccceeeeeeeecCCCceeEEeccC-CccceeEEeeeeEEeecCC--CCccEEEEeCC---------------------c
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVG-SLAFGDLEGIISSFRESKS--DDRRFYIFTAT---------------------K 58 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~-~~~~G~i~L~~a~i~~~~~--d~~~f~i~~~~---------------------~ 58 (666)
...||-|-|||. ...|.||+++. ..+.|.|.|..+.|...+. .+..|.|.+.+ .
T Consensus 13 ~~~WkkRwfvL~--~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 90 (125)
T cd01252 13 VKTWKRRWFILT--DNCLYYFEYTTDKEPRGIIPLENVSIREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHS 90 (125)
T ss_pred CCCeEeEEEEEE--CCEEEEEcCCCCCCceEEEECCCcEEEEcccCCCCeeEEEECCccccccccccccccccccccCce
Confidence 357999999985 56899999765 6899999999988877644 33447776644 4
Q ss_pred EEEEEcCChhhHHHHHHHHHHHhHhCC
Q 042453 59 TLHLRTNSRRDRVAWIQALVSTRSLYP 85 (666)
Q Consensus 59 ~~~lra~~~~~r~~Wi~al~~~~~~~~ 85 (666)
+++|.|+|.+|+.+||+||+.++..-+
T Consensus 91 ~~~~~A~s~~e~~~Wi~al~~~~~~~~ 117 (125)
T cd01252 91 VYRISAANDEEMDEWIKSIKASISPNP 117 (125)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence 788999999999999999999976554
No 24
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.39 E-value=2e-06 Score=74.27 Aligned_cols=76 Identities=22% Similarity=0.183 Sum_probs=66.7
Q ss_pred ccceeeeeeeecCCCceeEEeccC----CccceeEEeeeeEEeecCC--------CCccEEEEeCCc-EEEEEcCChhhH
Q 042453 4 EDEKLRIFFELLTLPGSHFLSSVG----SLAFGDLEGIISSFRESKS--------DDRRFYIFTATK-TLHLRTNSRRDR 70 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~y~~~~~----~~~~G~i~L~~a~i~~~~~--------d~~~f~i~~~~~-~~~lra~~~~~r 70 (666)
..||-|-|||.- +.|.||++.. ..+.|.|.|..+.|..... .+..|.|.+.+. +++|+|+|.+++
T Consensus 15 ~~wk~r~~vL~~--~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~ 92 (104)
T PF00169_consen 15 KKWKKRYFVLRD--SYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEER 92 (104)
T ss_dssp SSEEEEEEEEET--TEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHH
T ss_pred CCeEEEEEEEEC--CEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHH
Confidence 468888888855 8899999887 5999999999999888655 467899999986 999999999999
Q ss_pred HHHHHHHHHHh
Q 042453 71 VAWIQALVSTR 81 (666)
Q Consensus 71 ~~Wi~al~~~~ 81 (666)
..||+||+.|.
T Consensus 93 ~~W~~~i~~~~ 103 (104)
T PF00169_consen 93 KRWIQAIQKAI 103 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999985
No 25
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.32 E-value=2.1e-06 Score=77.77 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=61.2
Q ss_pred cccceeeeeeeecCCCceeEEeccCC---ccceeEEeeeeEEeecC-CCCccEEEEeC--C----cEEEEEcCChhhHHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVGS---LAFGDLEGIISSFRESK-SDDRRFYIFTA--T----KTLHLRTNSRRDRVA 72 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~~---~~~G~i~L~~a~i~~~~-~d~~~f~i~~~--~----~~~~lra~~~~~r~~ 72 (666)
..+||=|.|++. -+-|+||++++. .+.|.|.|+++.|..+. -+..+|.|--- . ++++|+|+|++++++
T Consensus 17 ~K~~KrrwF~lk--~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~ 94 (106)
T cd01237 17 LKGYKQYWFTFR--DTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAK 94 (106)
T ss_pred hhhheeEEEEEe--CCEEEEEccchhcCCCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHHH
Confidence 568999999988 678999999885 67777888888876553 13556777654 3 789999999999999
Q ss_pred HHHHHHHH
Q 042453 73 WIQALVST 80 (666)
Q Consensus 73 Wi~al~~~ 80 (666)
||.|++-|
T Consensus 95 Wmaa~rla 102 (106)
T cd01237 95 WMAACRLA 102 (106)
T ss_pred HHHHHHHh
Confidence 99999877
No 26
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.19 E-value=9.3e-06 Score=68.72 Aligned_cols=76 Identities=22% Similarity=0.249 Sum_probs=63.8
Q ss_pred ccceeeeeeeecCCCceeEEeccC----CccceeEEeeeeEEeecCC-----CCccEEEEeCCc-EEEEEcCChhhHHHH
Q 042453 4 EDEKLRIFFELLTLPGSHFLSSVG----SLAFGDLEGIISSFRESKS-----DDRRFYIFTATK-TLHLRTNSRRDRVAW 73 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~y~~~~~----~~~~G~i~L~~a~i~~~~~-----d~~~f~i~~~~~-~~~lra~~~~~r~~W 73 (666)
..|+=|.|+|. .+.|+||+.+. ..+.++|.|..+.|...+. .+..|.|.++++ +++|+|+|.+|+..|
T Consensus 16 ~~~~~~~~~L~--~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W 93 (102)
T smart00233 16 KSWKKRYFVLF--NSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEW 93 (102)
T ss_pred CCceEEEEEEE--CCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHH
Confidence 34666666654 48999999776 4678999999998888876 478999999988 999999999999999
Q ss_pred HHHHHHHh
Q 042453 74 IQALVSTR 81 (666)
Q Consensus 74 i~al~~~~ 81 (666)
+.+|+.+.
T Consensus 94 ~~~i~~~~ 101 (102)
T smart00233 94 VDALRKAI 101 (102)
T ss_pred HHHHHHhh
Confidence 99999874
No 27
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.13 E-value=1.2e-05 Score=72.22 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=61.7
Q ss_pred ceeeeeeeecCCCceeEEeccC--C---ccceeEEeeeeEEeecCCC---CccEEEEeCCcEEEEEcCChhhHHHHHHHH
Q 042453 6 EKLRIFFELLTLPGSHFLSSVG--S---LAFGDLEGIISSFRESKSD---DRRFYIFTATKTLHLRTNSRRDRVAWIQAL 77 (666)
Q Consensus 6 ~~~~~~~~~~~~~~l~y~~~~~--~---~~~G~i~L~~a~i~~~~~d---~~~f~i~~~~~~~~lra~~~~~r~~Wi~al 77 (666)
-|-|.|||. .+.|.||...- . ..+|.|.|....|...+.+ +..|.|.+..+.|.|.|.|.+||.+||++|
T Consensus 16 ~~~R~~FLF--nD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i 93 (99)
T cd01220 16 LQQRMFFLF--SDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADL 93 (99)
T ss_pred CceEEEEEc--cceEEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHH
Confidence 355778874 45899987432 2 5789999999998876553 579999999999999999999999999999
Q ss_pred HHHhH
Q 042453 78 VSTRS 82 (666)
Q Consensus 78 ~~~~~ 82 (666)
+.|++
T Consensus 94 ~~aI~ 98 (99)
T cd01220 94 SKAIA 98 (99)
T ss_pred HHHhh
Confidence 99975
No 28
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.05 E-value=2.2e-05 Score=65.79 Aligned_cols=75 Identities=24% Similarity=0.246 Sum_probs=62.7
Q ss_pred ccceeeeeeeecCCCceeEEeccC----CccceeEEeeeeEEeecCCC---CccEEEEeCC-cEEEEEcCChhhHHHHHH
Q 042453 4 EDEKLRIFFELLTLPGSHFLSSVG----SLAFGDLEGIISSFRESKSD---DRRFYIFTAT-KTLHLRTNSRRDRVAWIQ 75 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~y~~~~~----~~~~G~i~L~~a~i~~~~~d---~~~f~i~~~~-~~~~lra~~~~~r~~Wi~ 75 (666)
..|+-|.|+|. ...|.||+... ..+.|.|.|..+.|.....+ +..|.|.+.+ +.++|+|+|.+|+..|+.
T Consensus 14 ~~w~~~~~~L~--~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~ 91 (96)
T cd00821 14 KGWKRRWFVLF--NDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIE 91 (96)
T ss_pred CCccEEEEEEE--CCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHH
Confidence 35777777765 56777777654 47899999999999888875 7899999998 999999999999999999
Q ss_pred HHHHH
Q 042453 76 ALVST 80 (666)
Q Consensus 76 al~~~ 80 (666)
+|+.+
T Consensus 92 ~l~~~ 96 (96)
T cd00821 92 ALQSA 96 (96)
T ss_pred HHhcC
Confidence 99864
No 29
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.01 E-value=1.9e-05 Score=73.40 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=61.4
Q ss_pred cccceeeeeeeecCCCceeEEeccCC-ccceeEEeeeeEEeecC---------------CCCccEEEEeCCcEEEEEcCC
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVGS-LAFGDLEGIISSFRESK---------------SDDRRFYIFTATKTLHLRTNS 66 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~~-~~~G~i~L~~a~i~~~~---------------~d~~~f~i~~~~~~~~lra~~ 66 (666)
++.|+=|=||++ ...|.||+...+ .++|.|-|...--.... .-...|.|.+...+++|+|+|
T Consensus 30 ~~~w~kRWFvlr--~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s 107 (121)
T cd01254 30 CDRWQKRWFIVK--ESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKS 107 (121)
T ss_pred ccCCcceeEEEe--CCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCC
Confidence 457888999977 789999999987 99999888543322211 223469999999999999999
Q ss_pred hhhHHHHHHHHHHH
Q 042453 67 RRDRVAWIQALVST 80 (666)
Q Consensus 67 ~~~r~~Wi~al~~~ 80 (666)
.+++++||+||+.|
T Consensus 108 ~~~~~~Wi~~i~~a 121 (121)
T cd01254 108 SRKLKQWMASIEDA 121 (121)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999875
No 30
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.98 E-value=2.4e-05 Score=70.51 Aligned_cols=78 Identities=15% Similarity=0.025 Sum_probs=52.5
Q ss_pred cccceeeeeeeecCCCceeEEeccCC-ccceeEEeeeeEE-----ee-cCCCCccEEEEeC--CcEE--EEEcCChhhHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVGS-LAFGDLEGIISSF-----RE-SKSDDRRFYIFTA--TKTL--HLRTNSRRDRV 71 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~~-~~~G~i~L~~a~i-----~~-~~~d~~~f~i~~~--~~~~--~lra~~~~~r~ 71 (666)
+..|+-|-|+|.- .+.|.||..+.. ...|.|.|.++.+ .. ++..+..|.|.+. +.+. +|.|+|.+||+
T Consensus 14 ~~~Wk~R~f~L~~-~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~~~r~f~a~s~ee~~ 92 (102)
T cd01241 14 IKTWRPRYFLLKS-DGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWTTVIERTFHVESPEERE 92 (102)
T ss_pred CCCCeeEEEEEeC-CCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccCCcccCEEEEeCCHHHHH
Confidence 5679999999875 355777766543 3346666666553 22 2333457999732 2233 66799999999
Q ss_pred HHHHHHHHHh
Q 042453 72 AWIQALVSTR 81 (666)
Q Consensus 72 ~Wi~al~~~~ 81 (666)
+||+||++++
T Consensus 93 eWi~ai~~v~ 102 (102)
T cd01241 93 EWIHAIQTVA 102 (102)
T ss_pred HHHHHHHhhC
Confidence 9999998863
No 31
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.84 E-value=5.4e-05 Score=68.04 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=60.7
Q ss_pred cccceeeeeeeec--CCCceeEEeccC-CccceeEEeeeeEEeecCCC----CccEEEEeCCc--EEEEEcCChhhHHHH
Q 042453 3 IEDEKLRIFFELL--TLPGSHFLSSVG-SLAFGDLEGIISSFRESKSD----DRRFYIFTATK--TLHLRTNSRRDRVAW 73 (666)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~l~y~~~~~-~~~~G~i~L~~a~i~~~~~d----~~~f~i~~~~~--~~~lra~~~~~r~~W 73 (666)
+.-||=|-|++.. +-+-|.|++.+. ..|.|.|.|..++|+...+. +--|-|.+... ++++-|.+ +||++|
T Consensus 13 ~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~W 91 (98)
T cd01245 13 TKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKW 91 (98)
T ss_pred ccccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHH
Confidence 3458889899863 447888988777 48999999999999986554 46688988876 56777777 999999
Q ss_pred HHHHHH
Q 042453 74 IQALVS 79 (666)
Q Consensus 74 i~al~~ 79 (666)
|++|+.
T Consensus 92 i~~l~~ 97 (98)
T cd01245 92 IESLQA 97 (98)
T ss_pred HHHHhc
Confidence 999985
No 32
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.77 E-value=9.5e-05 Score=66.21 Aligned_cols=75 Identities=9% Similarity=0.041 Sum_probs=57.0
Q ss_pred ccceeeeeeeecCCCceeEEeccCC---ccce--eEEeeeeEEeecCCC---CccEEEE-eCCcEEEEEcCChhhHHHHH
Q 042453 4 EDEKLRIFFELLTLPGSHFLSSVGS---LAFG--DLEGIISSFRESKSD---DRRFYIF-TATKTLHLRTNSRRDRVAWI 74 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~y~~~~~~---~~~G--~i~L~~a~i~~~~~d---~~~f~i~-~~~~~~~lra~~~~~r~~Wi 74 (666)
..||-|-|||. ...|.||+.++. ...| .|.|..+.|...++. +..|.|. .+++++.|+|+|.++...||
T Consensus 21 ~~Wk~r~~vL~--~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi 98 (104)
T cd01253 21 RSWDNVYGVLC--GQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWV 98 (104)
T ss_pred CCcceEEEEEe--CCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHH
Confidence 46888888875 567888886653 3334 788888877666543 3568885 45689999999999999999
Q ss_pred HHHHHH
Q 042453 75 QALVST 80 (666)
Q Consensus 75 ~al~~~ 80 (666)
.||+++
T Consensus 99 ~aL~~~ 104 (104)
T cd01253 99 RALKSA 104 (104)
T ss_pred HHHhcC
Confidence 999864
No 33
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.68 E-value=0.00024 Score=64.53 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=61.2
Q ss_pred cceeeeeeeecCCCceeEEecc-CC---ccceeEEeeeeEEeecCCC---CccEEEEeCCcEEEEEcCChhhHHHHHHHH
Q 042453 5 DEKLRIFFELLTLPGSHFLSSV-GS---LAFGDLEGIISSFRESKSD---DRRFYIFTATKTLHLRTNSRRDRVAWIQAL 77 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~l~y~~~~-~~---~~~G~i~L~~a~i~~~~~d---~~~f~i~~~~~~~~lra~~~~~r~~Wi~al 77 (666)
+-|-|-|||- .+.|.|.+-. ++ ...+.|.|....|.....+ +..|.|.+..|+|-+.|+|++||.+|+++|
T Consensus 17 ~~~~R~ffLF--nD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i 94 (104)
T cd01218 17 KPKQRQFFLF--NDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHI 94 (104)
T ss_pred CCceEEEEEe--cCEEEEEEeecCCceeeEeeEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHH
Confidence 3466888874 4589997642 22 3457789988877655433 479999999999999999999999999999
Q ss_pred HHHhHhC
Q 042453 78 VSTRSLY 84 (666)
Q Consensus 78 ~~~~~~~ 84 (666)
+.|++..
T Consensus 95 ~~ai~~~ 101 (104)
T cd01218 95 NKCVTDL 101 (104)
T ss_pred HHHHHHH
Confidence 9998763
No 34
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.63 E-value=0.00012 Score=68.38 Aligned_cols=76 Identities=13% Similarity=0.070 Sum_probs=56.7
Q ss_pred cccceeeeeeeecCCCceeEEeccC----CccceeEEeeeeEEeecC-------CCCccEEEEeC---------------
Q 042453 3 IEDEKLRIFFELLTLPGSHFLSSVG----SLAFGDLEGIISSFRESK-------SDDRRFYIFTA--------------- 56 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~~~~----~~~~G~i~L~~a~i~~~~-------~d~~~f~i~~~--------------- 56 (666)
|..|+=|-|||. -+.|.|++..+ ..|.|.|.|..+.+...+ .-+.+|.|-+-
T Consensus 16 ~k~W~RRWFvL~--g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~ 93 (122)
T cd01263 16 FGAWHRRWCALE--GGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQC 93 (122)
T ss_pred CCCceEEEEEEe--CCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeecc
Confidence 557999999998 56666766444 378899999999886663 34556888431
Q ss_pred ----CcEEE-EEcCChhhHHHHHHHHHHH
Q 042453 57 ----TKTLH-LRTNSRRDRVAWIQALVST 80 (666)
Q Consensus 57 ----~~~~~-lra~~~~~r~~Wi~al~~~ 80 (666)
.+++| |-|++.+||+.||.||+.|
T Consensus 94 ~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 94 RRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred CCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 24444 7799999999999999865
No 35
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=97.58 E-value=0.00043 Score=58.36 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=60.8
Q ss_pred ccceeeeeeeecCCCceeEEeccCCccc--eeEEeeeeEEeecCC---CCccEEEEeC---CcEEEEEcCChhhHHHHHH
Q 042453 4 EDEKLRIFFELLTLPGSHFLSSVGSLAF--GDLEGIISSFRESKS---DDRRFYIFTA---TKTLHLRTNSRRDRVAWIQ 75 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~y~~~~~~~~~--G~i~L~~a~i~~~~~---d~~~f~i~~~---~~~~~lra~~~~~r~~Wi~ 75 (666)
..|+-|-|++. ...|.||+.+..+.. +.+.|....|..+.. .+..|.|.+. +..++|+|++.+|+..|+.
T Consensus 17 ~~w~~~~~~l~--~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~ 94 (99)
T cd00900 17 KRWKRRWFFLF--DDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVE 94 (99)
T ss_pred cCceeeEEEEE--CCEEEEEEcCCCCcCCCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHH
Confidence 35777777764 678999998876544 589998888666654 4789999998 7889999999999999999
Q ss_pred HHHHH
Q 042453 76 ALVST 80 (666)
Q Consensus 76 al~~~ 80 (666)
||+.|
T Consensus 95 al~~~ 99 (99)
T cd00900 95 ALQQA 99 (99)
T ss_pred HHhcC
Confidence 99864
No 36
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=97.43 E-value=0.00046 Score=62.75 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=56.2
Q ss_pred eeeeeeeecCCCceeEEeccCCccceeEEeeeeEEeecCCCCccEEEEeCCcEEEEEcCChhhHHHHHHHHHHHhHhC
Q 042453 7 KLRIFFELLTLPGSHFLSSVGSLAFGDLEGIISSFRESKSDDRRFYIFTATKTLHLRTNSRRDRVAWIQALVSTRSLY 84 (666)
Q Consensus 7 ~~~~~~~~~~~~~l~y~~~~~~~~~G~i~L~~a~i~~~~~d~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~~~~~~ 84 (666)
|-|.|+|-.. |-|.|+++.+...+|+|.+.-. +...--+.++|.|.|.++|+||...+... ..|++|+++++..+
T Consensus 28 kkR~liLTd~-PrL~Yvdp~~~~~KGeI~~~~~-l~v~~k~~~~F~I~tp~RtY~l~d~~~~A-~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 28 KKRQLILTDG-PRLFYVDPKKMVLKGEIPWSKE-LSVEVKSFKTFFIHTPKRTYYLEDPEGNA-QQWVEAIEEVKKQY 102 (104)
T ss_dssp EEEEEEEETT-TEEEEEETTTTEEEEEE--STT--EEEECSSSEEEEEETTEEEEEE-TTS-H-HHHHHHHHHHHHHH
T ss_pred EEEEEEEccC-CEEEEEECCCCeECcEEecCCc-eEEEEccCCEEEEECCCcEEEEECCCCCH-HHHHHHHHHHHHHh
Confidence 4566666644 8999999999999999999843 33344677899999999999999866664 56999999997653
No 37
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.28 E-value=0.0017 Score=59.90 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=53.9
Q ss_pred eeeeeeeecCCCceeEEeccCCcc------------ceeEEeeeeEEeecCC---CCccEEEEeC-CcEEEEEcCChhhH
Q 042453 7 KLRIFFELLTLPGSHFLSSVGSLA------------FGDLEGIISSFRESKS---DDRRFYIFTA-TKTLHLRTNSRRDR 70 (666)
Q Consensus 7 ~~~~~~~~~~~~~l~y~~~~~~~~------------~G~i~L~~a~i~~~~~---d~~~f~i~~~-~~~~~lra~~~~~r 70 (666)
|=|.|||- .+.|.||+..+.++ ++.+-|....|.-.+. -...|.|.+. ++.+.|.|.+++||
T Consensus 21 q~R~~FLF--d~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK 98 (112)
T cd01261 21 HERHVFLF--DGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEK 98 (112)
T ss_pred ceEEEEEe--cCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHH
Confidence 44777774 46789999866422 2335555545543222 2578999985 67899999999999
Q ss_pred HHHHHHHHHHhHh
Q 042453 71 VAWIQALVSTRSL 83 (666)
Q Consensus 71 ~~Wi~al~~~~~~ 83 (666)
.+||+||..++.+
T Consensus 99 ~~Wm~~l~~~~~~ 111 (112)
T cd01261 99 NNWMAALISVQTK 111 (112)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998754
No 38
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.25 E-value=0.0016 Score=58.48 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=51.8
Q ss_pred eeeeeeecCCCceeEEeccCC--ccceeEEeeeeEEeec-CCCCccEEEEeCC---cEEEEEcCChhhHHHHHHHHHHHh
Q 042453 8 LRIFFELLTLPGSHFLSSVGS--LAFGDLEGIISSFRES-KSDDRRFYIFTAT---KTLHLRTNSRRDRVAWIQALVSTR 81 (666)
Q Consensus 8 ~~~~~~~~~~~~l~y~~~~~~--~~~G~i~L~~a~i~~~-~~d~~~f~i~~~~---~~~~lra~~~~~r~~Wi~al~~~~ 81 (666)
-|-.|| -...|.||+..|. .-+.-|.+..-.|.++ +.|+++|.|...+ .++.|+|.|.++|..||++|+.+.
T Consensus 18 eR~vFL--Fe~~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 18 PRLLFL--FQTMLLIAKPRGDKYQFKAYIPCKNLMLVEHLPGEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred ceEEEE--ecccEEEEEecCCeeEEEEEEEecceEEecCCCCCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 344443 2467999998876 2333344444444444 2489999997664 589999999999999999999885
No 39
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.92 E-value=0.0026 Score=57.70 Aligned_cols=45 Identities=31% Similarity=0.434 Sum_probs=40.3
Q ss_pred EEeeeeEEeecCCCCcc--EEEEeCCc--EEEEEcCChhhHHHHHHHHH
Q 042453 34 LEGIISSFRESKSDDRR--FYIFTATK--TLHLRTNSRRDRVAWIQALV 78 (666)
Q Consensus 34 i~L~~a~i~~~~~d~~~--f~i~~~~~--~~~lra~~~~~r~~Wi~al~ 78 (666)
|.|+-++++..++.|+| |.|.+.++ ++-|||.|..+|..||+|+.
T Consensus 54 ~~l~sc~~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 54 LTLKSCSRRKTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred EeeeeccccccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 78899999999999999 57766766 89999999999999999974
No 40
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.47 E-value=0.016 Score=53.81 Aligned_cols=79 Identities=10% Similarity=-0.003 Sum_probs=56.1
Q ss_pred cceeeeeeeecCCCceeEEeccCC--------ccceeEEeeeeEEeecCCCC---ccEEEEeC-CcEEEEEcCChhhHHH
Q 042453 5 DEKLRIFFELLTLPGSHFLSSVGS--------LAFGDLEGIISSFRESKSDD---RRFYIFTA-TKTLHLRTNSRRDRVA 72 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~l~y~~~~~~--------~~~G~i~L~~a~i~~~~~d~---~~f~i~~~-~~~~~lra~~~~~r~~ 72 (666)
.|+-+--|| ....|..|+.+.. ...-.|.|..|...+.-... ..|.|.+. ++.+.|+|.|.+|.+.
T Consensus 25 ~Wk~~y~vL--~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~ 102 (117)
T cd01230 25 SWKMFYGIL--RGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQS 102 (117)
T ss_pred cceEEEEEE--ECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHH
Confidence 344444343 5567777776653 22345888888754444443 35888886 5889999999999999
Q ss_pred HHHHHHHHhHhCC
Q 042453 73 WIQALVSTRSLYP 85 (666)
Q Consensus 73 Wi~al~~~~~~~~ 85 (666)
||++|..+...++
T Consensus 103 Wi~~I~~~~~~~s 115 (117)
T cd01230 103 WIERINVVAAAFS 115 (117)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988775
No 41
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.40 E-value=0.011 Score=52.18 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=58.0
Q ss_pred eeeeeeeecCCCceeEEeccCCccceeEEeeeeEEeecCCCCccEEEEeCCcEEEEEcCChhhHHHHHHHHHHHh
Q 042453 7 KLRIFFELLTLPGSHFLSSVGSLAFGDLEGIISSFRESKSDDRRFYIFTATKTLHLRTNSRRDRVAWIQALVSTR 81 (666)
Q Consensus 7 ~~~~~~~~~~~~~l~y~~~~~~~~~G~i~L~~a~i~~~~~d~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~~~ 81 (666)
|-|.|+|- +.|-|.|+++.....+|+|-+.-..++.---+..+|.|.|.++|+||--. .-.=.+|++|++++.
T Consensus 16 kkR~LiLT-d~PrL~yvdp~~~~~KgeIp~s~~~l~v~~~~~~~F~I~Tp~rty~leD~-~~~a~~W~~~I~~~~ 88 (89)
T cd01262 16 KKRQLILT-NGPRLIYVDPVKKVVKGEIPWSDVELRVEVKNSSHFFVHTPNKVYSFEDP-KGRASQWKKAIEDLQ 88 (89)
T ss_pred ceeeEEEe-cCceEEEEcCCcCeEEeEecccccceEEEEecCccEEEECCCceEEEECC-CCCHHHHHHHHHHHh
Confidence 34555544 48899999999999999998887556666667799999999999999533 456678999999874
No 42
>PF15406 PH_6: Pleckstrin homology domain
Probab=96.33 E-value=0.0082 Score=54.67 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=50.3
Q ss_pred CCCceeEEec-cC-CccceeEEeeeeEEeecCCCCccEEEEeCCcEEEEEcCChhhHHHHHHHHHH
Q 042453 16 TLPGSHFLSS-VG-SLAFGDLEGIISSFRESKSDDRRFYIFTATKTLHLRTNSRRDRVAWIQALVS 79 (666)
Q Consensus 16 ~~~~l~y~~~-~~-~~~~G~i~L~~a~i~~~~~d~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~ 79 (666)
|--||.||.- ++ ..|-|.|+|.-++=. ..+-+..|.+.+.++.-.|+|.|..||..||-+|+.
T Consensus 47 TGKGLLF~~K~~dka~P~GiinLadase~-~~~g~~kF~f~~~G~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 47 TGKGLLFFSKAEDKASPSGIINLADASEP-EKDGSNKFHFKIKGHKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred cCceEEEEeccccccCCcceEehhhcccc-ccCCCceEEEEeCCceeeeecCCHHHhccHHHHhhc
Confidence 3456777763 33 489999999766643 445567899999999999999999999999999874
No 43
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.44 E-value=0.042 Score=50.88 Aligned_cols=71 Identities=20% Similarity=0.350 Sum_probs=49.1
Q ss_pred eeeeeecCCCceeEEeccCCcc-cee------EEeeeeEEee---cCCCCccEEEEeCC-----cEEEEEcCChhhHHHH
Q 042453 9 RIFFELLTLPGSHFLSSVGSLA-FGD------LEGIISSFRE---SKSDDRRFYIFTAT-----KTLHLRTNSRRDRVAW 73 (666)
Q Consensus 9 ~~~~~~~~~~~l~y~~~~~~~~-~G~------i~L~~a~i~~---~~~d~~~f~i~~~~-----~~~~lra~~~~~r~~W 73 (666)
|-+||- ...|.|++...... .|. =+|+.+.++. .+.|+++|.|.+.+ +++-|+|.|.+.|++|
T Consensus 27 R~vFLF--e~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W 104 (114)
T cd01232 27 RRVFLF--EQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEW 104 (114)
T ss_pred eEEEEe--eceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHH
Confidence 444443 35688888754322 122 2444454444 45899999997764 5799999999999999
Q ss_pred HHHHHHHh
Q 042453 74 IQALVSTR 81 (666)
Q Consensus 74 i~al~~~~ 81 (666)
|..|....
T Consensus 105 ~~~I~~il 112 (114)
T cd01232 105 VKKIREIL 112 (114)
T ss_pred HHHHHHHh
Confidence 99998764
No 44
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.13 E-value=0.063 Score=50.46 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=45.7
Q ss_pred ecCCCceeEEeccCCccceeE------EeeeeEEeecC----------CCCccEEEE-----eC-CcEEEEEcCChhhHH
Q 042453 14 LLTLPGSHFLSSVGSLAFGDL------EGIISSFRESK----------SDDRRFYIF-----TA-TKTLHLRTNSRRDRV 71 (666)
Q Consensus 14 ~~~~~~l~y~~~~~~~~~G~i------~L~~a~i~~~~----------~d~~~f~i~-----~~-~~~~~lra~~~~~r~ 71 (666)
-|-++.|.||+.+++..+-+. +|.+..+-... ..+-.|.|+ -| +.++-|+|+|..||+
T Consensus 33 fLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~ 112 (125)
T cd01221 33 FLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRE 112 (125)
T ss_pred EEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHH
Confidence 345788999998887666551 34444443222 356789996 33 344999999999999
Q ss_pred HHHHHHH
Q 042453 72 AWIQALV 78 (666)
Q Consensus 72 ~Wi~al~ 78 (666)
+||+||.
T Consensus 113 rWi~Al~ 119 (125)
T cd01221 113 RWLSALA 119 (125)
T ss_pred HHHHhcC
Confidence 9999984
No 45
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.14 Score=53.86 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=62.6
Q ss_pred cceeeeeeeecCCCceeEEe-ccCCccceeEEeeeeEEeecCC--CCccEEEEeC----------------------CcE
Q 042453 5 DEKLRIFFELLTLPGSHFLS-SVGSLAFGDLEGIISSFRESKS--DDRRFYIFTA----------------------TKT 59 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~l~y~~-~~~~~~~G~i~L~~a~i~~~~~--d~~~f~i~~~----------------------~~~ 59 (666)
-||-|-|+| +.+.|-|++ .-+-.|+|-|.|..-+|+.++. -+--|.|+.. +..
T Consensus 276 tWKrRWFiL--tdNCLYYFe~tTDKEPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~v 353 (395)
T KOG0930|consen 276 TWKRRWFIL--TDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSV 353 (395)
T ss_pred chhheeEEe--ecceeeeeeeccCCCCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceE
Confidence 488888886 567787766 4456999999999999998753 3334555542 235
Q ss_pred EEEEcCChhhHHHHHHHHHHHhHhCCcc
Q 042453 60 LHLRTNSRRDRVAWIQALVSTRSLYPLR 87 (666)
Q Consensus 60 ~~lra~~~~~r~~Wi~al~~~~~~~~~~ 87 (666)
+.+-|.+.+|+..||+++++++.+-|.+
T Consensus 354 YrIsA~~~Ee~~~Wi~sI~a~is~~Pfy 381 (395)
T KOG0930|consen 354 YRISAPTPEEKDEWIKSIKAAISRDPFY 381 (395)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhccCcHH
Confidence 7899999999999999999999887753
No 46
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.13 E-value=0.36 Score=44.40 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=49.4
Q ss_pred eeeeeeeecCCCceeEEecc---CC--ccceeEEeeeeEEeecCCCCc----------cEEEEeCC--cEEEEEcCChhh
Q 042453 7 KLRIFFELLTLPGSHFLSSV---GS--LAFGDLEGIISSFRESKSDDR----------RFYIFTAT--KTLHLRTNSRRD 69 (666)
Q Consensus 7 ~~~~~~~~~~~~~l~y~~~~---~~--~~~G~i~L~~a~i~~~~~d~~----------~f~i~~~~--~~~~lra~~~~~ 69 (666)
|=|.|||-+ ..|.||+.. +. .-+|.|-|....|.-. +|.. -|.|...+ +.+.|-|.++++
T Consensus 19 q~R~~FLFD--~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~-~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~ 95 (109)
T cd01224 19 SSRVLFLFD--HQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNI-RDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAER 95 (109)
T ss_pred ccEEEEEec--ceEEEEecccccCCcEEEEEEEEcccEEEEEC-CCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHH
Confidence 347777654 579999954 32 4457777777766543 3332 24455444 669999999999
Q ss_pred HHHHHHHHHHHh
Q 042453 70 RVAWIQALVSTR 81 (666)
Q Consensus 70 r~~Wi~al~~~~ 81 (666)
+..|++||..-+
T Consensus 96 K~~Wm~a~~~er 107 (109)
T cd01224 96 KHRWLSAFALER 107 (109)
T ss_pred HHHHHHHHHHhh
Confidence 999999997643
No 47
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=93.92 E-value=0.054 Score=65.00 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=47.2
Q ss_pred ceeEEeeeeEEeecCCC-Ccc--EEEEeCCcEEEEEcCChhhHHHHHHHHHHHhHhC
Q 042453 31 FGDLEGIISSFRESKSD-DRR--FYIFTATKTLHLRTNSRRDRVAWIQALVSTRSLY 84 (666)
Q Consensus 31 ~G~i~L~~a~i~~~~~d-~~~--f~i~~~~~~~~lra~~~~~r~~Wi~al~~~~~~~ 84 (666)
...+-|..++|...++. |+| |.|.+++|++||||+|+.++++||.+|+..+...
T Consensus 315 ~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 315 VLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred cccccchhccccCCcccccceeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 55688899999998886 554 7899999999999999999999999999997764
No 48
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.50 E-value=0.26 Score=45.20 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCCCccEEEEeCCc----EEEEEcCChhhHHHHHHHHHH
Q 042453 45 KSDDRRFYIFTATK----TLHLRTNSRRDRVAWIQALVS 79 (666)
Q Consensus 45 ~~d~~~f~i~~~~~----~~~lra~~~~~r~~Wi~al~~ 79 (666)
...++.|+|..++. ++||=|.|+++.+.|+++|..
T Consensus 76 ~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 76 SLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred CccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 36678999999875 799999999999999999974
No 49
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=93.26 E-value=0.044 Score=65.36 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=66.5
Q ss_pred cccceeeeeeeecCCCceeEEe-ccCCccceeEEee----eeEEeecCCCCc-cEEEEeCCcEEEEEcCChhhHHHHHHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLS-SVGSLAFGDLEGI----ISSFRESKSDDR-RFYIFTATKTLHLRTNSRRDRVAWIQA 76 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~-~~~~~~~G~i~L~----~a~i~~~~~d~~-~f~i~~~~~~~~lra~~~~~r~~Wi~a 76 (666)
..+||-|-|||+-+-.-|-||+ +.+.+++|||.|. ++-|+.-.-|.+ -|.+.|-.+++-|=|.+...-++||+.
T Consensus 1647 lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~ 1726 (1732)
T KOG1090|consen 1647 LKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVEC 1726 (1732)
T ss_pred hcccccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccccCccceeeeehhhHHHHHHhccchHHHHHHHH
Confidence 4589999999999999999998 5567999999985 445555555655 467888888999999999999999999
Q ss_pred HHHHh
Q 042453 77 LVSTR 81 (666)
Q Consensus 77 l~~~~ 81 (666)
||++.
T Consensus 1727 iqscl 1731 (1732)
T KOG1090|consen 1727 IQSCL 1731 (1732)
T ss_pred HHHhh
Confidence 99874
No 50
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.25 E-value=0.2 Score=47.71 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=47.1
Q ss_pred CceeEEeccCCc--ccee------EEeeeeEEeec---CCCCccEEEEeCC--cEEEEEcCChhhHHHHHHHHHHHhHh
Q 042453 18 PGSHFLSSVGSL--AFGD------LEGIISSFRES---KSDDRRFYIFTAT--KTLHLRTNSRRDRVAWIQALVSTRSL 83 (666)
Q Consensus 18 ~~l~y~~~~~~~--~~G~------i~L~~a~i~~~---~~d~~~f~i~~~~--~~~~lra~~~~~r~~Wi~al~~~~~~ 83 (666)
.++.+|+..... ..+. =+++.+.++.. +.|+++|.|-+.+ .++-|+|.|.+.|++|++.|......
T Consensus 39 ~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~ 117 (133)
T cd01227 39 KAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTS 117 (133)
T ss_pred ceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 567888866421 1121 24555555554 3789999999875 46999999999999999999877544
No 51
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.56 E-value=0.44 Score=43.18 Aligned_cols=66 Identities=8% Similarity=0.063 Sum_probs=45.7
Q ss_pred CCceeEEec--cCC-ccceeEEeeeeEE-eecC--CCCccEEEEeCCcEEEEEcCChhhHHHHHHHHHHHhH
Q 042453 17 LPGSHFLSS--VGS-LAFGDLEGIISSF-RESK--SDDRRFYIFTATKTLHLRTNSRRDRVAWIQALVSTRS 82 (666)
Q Consensus 17 ~~~l~y~~~--~~~-~~~G~i~L~~a~i-~~~~--~d~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~~~~ 82 (666)
.+.|.|-.- ++. .-..|+.|..-.+ -+.| -=..-|-|-|..+++=+||+++++|.+|++.|+.|+.
T Consensus 28 ND~Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~~ 99 (100)
T cd01226 28 NDRLIVGNINAAGKYVMESTYSLNSVAVVNVKDRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAKR 99 (100)
T ss_pred ccEEEEEEecccceEEEEEEEehHHeEEEecCCCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHhc
Confidence 345666543 221 3336666654333 2222 2346799999999999999999999999999999973
No 52
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=91.34 E-value=1.3 Score=41.23 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=52.8
Q ss_pred cceeeeeeeecCCCceeEEeccCC--c----cceeEEeeeeEEeecCC----------CCccEEEEeCCcEEEEEcCChh
Q 042453 5 DEKLRIFFELLTLPGSHFLSSVGS--L----AFGDLEGIISSFRESKS----------DDRRFYIFTATKTLHLRTNSRR 68 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~l~y~~~~~~--~----~~G~i~L~~a~i~~~~~----------d~~~f~i~~~~~~~~lra~~~~ 68 (666)
....|-|.+......|..+.++.. . ..++|+|.......+.. -...|.|.++..++.|-|.+.+
T Consensus 29 ~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~R~L~l~a~s~~ 108 (123)
T PF12814_consen 29 KPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPDRSLDLTAPSRE 108 (123)
T ss_pred CcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEEEcCCeEEEEEeCCHH
Confidence 345788888888778777775421 1 22445554443333321 1355778889999999999999
Q ss_pred hHHHHHHHHHHHh
Q 042453 69 DRVAWIQALVSTR 81 (666)
Q Consensus 69 ~r~~Wi~al~~~~ 81 (666)
+...|++||+--.
T Consensus 109 ~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 109 RHEIWFNALRYLL 121 (123)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998643
No 53
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=89.31 E-value=0.81 Score=41.03 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=46.9
Q ss_pred cceeeeeeeecCCCceeE--EeccCC-c--ccee---EEeeeeEEeecCCCCccEEE-EeCCcEEEEEcCChhhHHHHHH
Q 042453 5 DEKLRIFFELLTLPGSHF--LSSVGS-L--AFGD---LEGIISSFRESKSDDRRFYI-FTATKTLHLRTNSRRDRVAWIQ 75 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~l~y--~~~~~~-~--~~G~---i~L~~a~i~~~~~d~~~f~i-~~~~~~~~lra~~~~~r~~Wi~ 75 (666)
.-|+|-|||--+ .|.| +..+++ + ..-| |-|..-.|...+ |-| ++.+|+|-+=|.|..||.+|++
T Consensus 16 ~rK~R~~FLFnD--lLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~-----~~~~~~~~KSf~~~asS~~Er~eW~~ 88 (96)
T cd01228 16 SRKLRHLFLFTD--VLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP-----FRIHNKNGKSYTFLLSSDYERSEWRE 88 (96)
T ss_pred CCcceEEEeecc--EEEEEEeeeccCccccccceeEEEEhHHheecchh-----hhccccCCceEEEEecCHHHHHHHHH
Confidence 458899987543 4565 333332 2 2222 777766665443 333 5689999999999999999999
Q ss_pred HHHHH
Q 042453 76 ALVST 80 (666)
Q Consensus 76 al~~~ 80 (666)
+++.-
T Consensus 89 hI~~~ 93 (96)
T cd01228 89 SIQKL 93 (96)
T ss_pred HHHHH
Confidence 99754
No 54
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=87.97 E-value=0.72 Score=52.21 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=30.7
Q ss_pred CCccEEEEe-CCcEEEEEcCChhhHHHHHHHHHHHhH
Q 042453 47 DDRRFYIFT-ATKTLHLRTNSRRDRVAWIQALVSTRS 82 (666)
Q Consensus 47 d~~~f~i~~-~~~~~~lra~~~~~r~~Wi~al~~~~~ 82 (666)
.+..|.|.+ +++.+.++|+|.+||..||+||+.|..
T Consensus 441 ~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 441 HPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred CCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 467788865 678899999999999999999999853
No 55
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.88 E-value=1.7 Score=40.55 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=43.4
Q ss_pred CceeEEeccCCccc-------eeEEeeeeEEeecC---CC--CccEE----EEeCC--cEEEEEcCChhhHHHHHHHHHH
Q 042453 18 PGSHFLSSVGSLAF-------GDLEGIISSFRESK---SD--DRRFY----IFTAT--KTLHLRTNSRRDRVAWIQALVS 79 (666)
Q Consensus 18 ~~l~y~~~~~~~~~-------G~i~L~~a~i~~~~---~d--~~~f~----i~~~~--~~~~lra~~~~~r~~Wi~al~~ 79 (666)
.++..|+..++... -++-|.--.|.+.+ .+ +.++. |...+ .-|.|-|-++++|.+|++||+.
T Consensus 30 k~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~ 109 (116)
T cd01223 30 KAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEM 109 (116)
T ss_pred ceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHH
Confidence 57889998776421 22333333355543 23 22444 55543 3499999999999999999999
Q ss_pred HhHh
Q 042453 80 TRSL 83 (666)
Q Consensus 80 ~~~~ 83 (666)
|+.-
T Consensus 110 a~sn 113 (116)
T cd01223 110 AMSN 113 (116)
T ss_pred HHhc
Confidence 9753
No 56
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=87.64 E-value=0.37 Score=55.08 Aligned_cols=39 Identities=31% Similarity=0.500 Sum_probs=32.7
Q ss_pred CCCCccEEEEeCC-cEEEEEcCChhhHHHHHHHHHHHhHh
Q 042453 45 KSDDRRFYIFTAT-KTLHLRTNSRRDRVAWIQALVSTRSL 83 (666)
Q Consensus 45 ~~d~~~f~i~~~~-~~~~lra~~~~~r~~Wi~al~~~~~~ 83 (666)
||.|--|.|-..| -||||-|.+.+||.+||+|+++-+..
T Consensus 442 dEEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIla 481 (749)
T KOG0705|consen 442 DEEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILA 481 (749)
T ss_pred ccccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHH
Confidence 4555678888775 56999999999999999999988765
No 57
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=86.73 E-value=0.62 Score=53.40 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=36.6
Q ss_pred CccEEEEeCCcEEEEEcCChhhHHHHHHHHHHHhHhCCcc
Q 042453 48 DRRFYIFTATKTLHLRTNSRRDRVAWIQALVSTRSLYPLR 87 (666)
Q Consensus 48 ~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~~~~~~~~~ 87 (666)
+.+|+++.-...+.|+|.|..++..||+++++|++.|-+.
T Consensus 336 ~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~ 375 (623)
T KOG4424|consen 336 PHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQC 375 (623)
T ss_pred CceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHH
Confidence 7899998878889999999999999999999999998754
No 58
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.85 E-value=1.4 Score=47.87 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=52.2
Q ss_pred cccceeeeeeeecCCCceeEEe--ccCCccc----eeEEeeeeE-EeecCCCCccEEEEeCCcE----EEEEcCChhhHH
Q 042453 3 IEDEKLRIFFELLTLPGSHFLS--SVGSLAF----GDLEGIISS-FRESKSDDRRFYIFTATKT----LHLRTNSRRDRV 71 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~y~~--~~~~~~~----G~i~L~~a~-i~~~~~d~~~f~i~~~~~~----~~lra~~~~~r~ 71 (666)
|..|.-|-|+|- .-+.|.=|+ ++..++. --...+.|. ...++--+.+|.|-+=+=| =.|-++++++|+
T Consensus 28 IknWRpRYF~l~-~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTTVIERTF~ves~~eRq 106 (516)
T KOG0690|consen 28 IKNWRPRYFLLF-NDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTTVIERTFYVESAEERQ 106 (516)
T ss_pred hhcccceEEEEe-eCCceEeeccCCccCCCCcccccchhhhhhhhhhccCCCCceEEEEeeeeeeeeeeeeecCCHHHHH
Confidence 566788877654 445555555 4444333 223333333 3446677899999875322 234589999999
Q ss_pred HHHHHHHHHhHhCC
Q 042453 72 AWIQALVSTRSLYP 85 (666)
Q Consensus 72 ~Wi~al~~~~~~~~ 85 (666)
+|++|++++-.+.+
T Consensus 107 ~W~~AIq~vsn~l~ 120 (516)
T KOG0690|consen 107 EWIEAIQAVSNRLK 120 (516)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999965544
No 59
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.82 E-value=4.9 Score=37.16 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=50.9
Q ss_pred cceeeeeeeecCCCceeEEeccC---CccceeEEeee----------eEEeecC-CCCccEEEEeCC--cEEEEEcCChh
Q 042453 5 DEKLRIFFELLTLPGSHFLSSVG---SLAFGDLEGII----------SSFRESK-SDDRRFYIFTAT--KTLHLRTNSRR 68 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~l~y~~~~~---~~~~G~i~L~~----------a~i~~~~-~d~~~f~i~~~~--~~~~lra~~~~ 68 (666)
||+ |.||-+-+---+.|=..++ ..|.-.+.|.. -+|+.++ +=||-|-|.++. .+++|=|++..
T Consensus 19 gW~-r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ 97 (112)
T cd01242 19 GWK-KQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQILYANEARDLLLLAPQTD 97 (112)
T ss_pred Cce-EEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEEeCCccceEEEEeCCch
Confidence 454 6677666666666654443 34555555543 1223333 347889999985 78999999999
Q ss_pred hHHHHHHHHHHHh
Q 042453 69 DRVAWIQALVSTR 81 (666)
Q Consensus 69 ~r~~Wi~al~~~~ 81 (666)
||++||.||..-+
T Consensus 98 ek~kWV~~L~~~~ 110 (112)
T cd01242 98 EQNKWVSRLVKKI 110 (112)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999997543
No 60
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=83.59 E-value=4.3 Score=37.53 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=47.7
Q ss_pred eeeeeeecCCCceeEEeccC---------------CccceeEEeeeeEEeecCC---CCccEEEEeC-CcEEEEEcCChh
Q 042453 8 LRIFFELLTLPGSHFLSSVG---------------SLAFGDLEGIISSFRESKS---DDRRFYIFTA-TKTLHLRTNSRR 68 (666)
Q Consensus 8 ~~~~~~~~~~~~l~y~~~~~---------------~~~~G~i~L~~a~i~~~~~---d~~~f~i~~~-~~~~~lra~~~~ 68 (666)
-+.++.-|....|..|+.+. .++-+.|.|..|...+..+ -+.-|.+.+. +..+=|||.|.+
T Consensus 26 Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~ 105 (119)
T PF15410_consen 26 WKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEE 105 (119)
T ss_dssp EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHH
T ss_pred ccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHH
Confidence 34566667778888888632 1233558898887777322 2556999987 688999999999
Q ss_pred hHHHHHHHHHHH
Q 042453 69 DRVAWIQALVST 80 (666)
Q Consensus 69 ~r~~Wi~al~~~ 80 (666)
|=..||++|..+
T Consensus 106 ~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 106 EMNEWIDAINYA 117 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999999865
No 61
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.41 E-value=5.1 Score=36.42 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=55.6
Q ss_pred cceeeeeeeecCCCceeEEeccC-CccceeEEeeeeEEeecCC----CCccEEEE--------eCCcEEEEEcCChhhHH
Q 042453 5 DEKLRIFFELLTLPGSHFLSSVG-SLAFGDLEGIISSFRESKS----DDRRFYIF--------TATKTLHLRTNSRRDRV 71 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~l~y~~~~~-~~~~G~i~L~~a~i~~~~~----d~~~f~i~--------~~~~~~~lra~~~~~r~ 71 (666)
|-|=|-||| +.+.|.||+-.. -.++|-|-|-+-.++..+. -+-.|.++ -+.||+.|-|++.+|=.
T Consensus 18 gsK~~WFVL--t~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vd 95 (110)
T cd01256 18 GSKDYWFVL--TSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVD 95 (110)
T ss_pred CCcceEEEE--ecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHH
Confidence 456677775 788999998665 5899999999998887764 23445555 46789999999999999
Q ss_pred HHHHHHH
Q 042453 72 AWIQALV 78 (666)
Q Consensus 72 ~Wi~al~ 78 (666)
.|--.+-
T Consensus 96 swkasfl 102 (110)
T cd01256 96 SWKASFL 102 (110)
T ss_pred HHHHHHH
Confidence 9975543
No 62
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.81 E-value=2.4 Score=39.72 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCCccEEEEeCC-------cEEEEEcCChhhHHHHHHHHHHHh
Q 042453 46 SDDRRFYIFTAT-------KTLHLRTNSRRDRVAWIQALVSTR 81 (666)
Q Consensus 46 ~d~~~f~i~~~~-------~~~~lra~~~~~r~~Wi~al~~~~ 81 (666)
+=|+-|-|++.. -+++|=|++..||++||.||+.-+
T Consensus 77 DiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~ 119 (122)
T cd01243 77 DIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELH 119 (122)
T ss_pred cCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHH
Confidence 346788888843 679999999999999999999864
No 63
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=76.05 E-value=2 Score=51.35 Aligned_cols=78 Identities=18% Similarity=0.306 Sum_probs=65.0
Q ss_pred ccccceeeeeeeecCCCceeEEeccCCcccee----EEeeeeEEeecCCCCccEEEEeCCcEEEEEcCChhhHHHHHHHH
Q 042453 2 EIEDEKLRIFFELLTLPGSHFLSSVGSLAFGD----LEGIISSFRESKSDDRRFYIFTATKTLHLRTNSRRDRVAWIQAL 77 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~y~~~~~~~~~G~----i~L~~a~i~~~~~d~~~f~i~~~~~~~~lra~~~~~r~~Wi~al 77 (666)
|.-|-|-.+|+. ++++-+..|++-..-+.|- |-+.++++.+++. |-|.++|.-..|-|-|++..+|+.|++|+
T Consensus 199 elrg~kak~f~~-vsp~~vqL~knlq~f~lgigit~I~m~~~nvk~vdr--~sfdl~Tp~r~fsftaese~erq~w~ea~ 275 (1186)
T KOG1117|consen 199 ELRGFKAKLFVA-VSPERVQLYKNLQSFPLGIGITFIYMEVSNVKEVDR--RSFDLNTPYREFSFTAESETERQIWGEAP 275 (1186)
T ss_pred hccccccceeEE-ecCceeeeecccccccCCceeEEEeccccccccccc--ceeccCCceeeeeeeeccchhhhhhhhcc
Confidence 445677778775 5677788888877766665 8899999987776 99999999999999999999999999999
Q ss_pred HHHhH
Q 042453 78 VSTRS 82 (666)
Q Consensus 78 ~~~~~ 82 (666)
+.++.
T Consensus 276 q~siA 280 (1186)
T KOG1117|consen 276 QPSIA 280 (1186)
T ss_pred Ccccc
Confidence 87754
No 64
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=71.95 E-value=4.7 Score=47.56 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=61.2
Q ss_pred eeeeeecCCCceeEEeccCCccceeEEeeeeEEeecC------C-CCccEEEEeCCcEEEEEcCChhhHHHHHHHHHHHh
Q 042453 9 RIFFELLTLPGSHFLSSVGSLAFGDLEGIISSFRESK------S-DDRRFYIFTATKTLHLRTNSRRDRVAWIQALVSTR 81 (666)
Q Consensus 9 ~~~~~~~~~~~l~y~~~~~~~~~G~i~L~~a~i~~~~------~-d~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~~~ 81 (666)
.+-.-.||...|+|-++.|.++.+.|-|. .|+... . -..-|.|.+.++|++|||.+-.|=..|++||.-+.
T Consensus 587 KKryf~LT~~~Ls~~Ksp~~q~~~~Ipl~--nI~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs 664 (800)
T KOG2059|consen 587 KKRYFRLTTEELSYAKSPGKQPIYTIPLS--NIRAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVS 664 (800)
T ss_pred hheEEEeccceeEEecCCccCcccceeHH--HHHHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHh
Confidence 33345789999999999999999998775 444443 2 23458888888999999999999999999999887
Q ss_pred HhCCcc
Q 042453 82 SLYPLR 87 (666)
Q Consensus 82 ~~~~~~ 87 (666)
.+-+.+
T Consensus 665 ~~N~~r 670 (800)
T KOG2059|consen 665 CCNQNR 670 (800)
T ss_pred ccCcch
Confidence 665554
No 65
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=70.27 E-value=9.8 Score=34.92 Aligned_cols=77 Identities=14% Similarity=0.130 Sum_probs=51.7
Q ss_pred ccceeeeeeeecCCC---ceeEEeccCCccceeEEeeeeEEeecCCCC-----------ccEE--EEeCCcEEEEEcCCh
Q 042453 4 EDEKLRIFFELLTLP---GSHFLSSVGSLAFGDLEGIISSFRESKSDD-----------RRFY--IFTATKTLHLRTNSR 67 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~---~l~y~~~~~~~~~G~i~L~~a~i~~~~~d~-----------~~f~--i~~~~~~~~lra~~~ 67 (666)
.-||=|-|||.-.-- +|+=|.-+-+.|.--|.|.+-.|---+..+ .||- ---.+.++.|-.+++
T Consensus 17 KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkegd~~~fa~~de 96 (117)
T cd01234 17 KKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEGDELKFATDDE 96 (117)
T ss_pred hhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccccchhhhheeccCcEEEEeccch
Confidence 458889999872211 122255666777777888877664433333 3332 223478899999999
Q ss_pred hhHHHHHHHHHHH
Q 042453 68 RDRVAWIQALVST 80 (666)
Q Consensus 68 ~~r~~Wi~al~~~ 80 (666)
.||.-||+||=.|
T Consensus 97 ~~r~lwvqa~yra 109 (117)
T cd01234 97 NERHLWVQAMYRA 109 (117)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999766
No 66
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=68.71 E-value=18 Score=33.53 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=28.2
Q ss_pred ccEEEEeCCcEEEEEcCChhhHHHHHHHHHHH
Q 042453 49 RRFYIFTATKTLHLRTNSRRDRVAWIQALVST 80 (666)
Q Consensus 49 ~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~~ 80 (666)
+-|-|.|+...+.|.++|..+.+.|+++++.-
T Consensus 71 ~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~m 102 (110)
T PF08458_consen 71 RYFGLKTAQGVVEFECDSQREYKRWVQGIQHM 102 (110)
T ss_pred EEEEEEecCcEEEEEeCChhhHHHHHHHHHHH
Confidence 45778888899999999999999999998765
No 67
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=66.04 E-value=5.6 Score=45.44 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.8
Q ss_pred CccEEEEe-CCcEEEEEcCChhhHHHHHHHHHHHhH
Q 042453 48 DRRFYIFT-ATKTLHLRTNSRRDRVAWIQALVSTRS 82 (666)
Q Consensus 48 ~~~f~i~~-~~~~~~lra~~~~~r~~Wi~al~~~~~ 82 (666)
+--|.+.+ ++|.+-|+|.+.+||..||.+||.+..
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 455 AHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 44466544 579999999999999999999999843
No 68
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=65.91 E-value=3.7 Score=47.32 Aligned_cols=78 Identities=24% Similarity=0.247 Sum_probs=53.3
Q ss_pred ccceeeeeeeecCCCceeEEe-ccCCcccee-EEeee-eEE------eecCCCCccEEEEeCCcEEEEEcCChhhHHHHH
Q 042453 4 EDEKLRIFFELLTLPGSHFLS-SVGSLAFGD-LEGII-SSF------RESKSDDRRFYIFTATKTLHLRTNSRRDRVAWI 74 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~y~~-~~~~~~~G~-i~L~~-a~i------~~~~~d~~~f~i~~~~~~~~lra~~~~~r~~Wi 74 (666)
.-|+-|-|- |+-+.|.|.+ +.++.-+.| |.|.. -|+ +-.++=++-|.|+|+++|+-|.|.|...-++|+
T Consensus 752 kRW~TrYFT--LSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWl 829 (851)
T KOG3723|consen 752 KRWKTRYFT--LSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWL 829 (851)
T ss_pred hhhccceEE--ecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcccchhhheeecCceEEeecccccCHHHHH
Confidence 346667664 3556677744 222333344 55431 111 334577889999999999999999999999999
Q ss_pred HHHHHHhHh
Q 042453 75 QALVSTRSL 83 (666)
Q Consensus 75 ~al~~~~~~ 83 (666)
+-|+-|..-
T Consensus 830 qCL~IavAH 838 (851)
T KOG3723|consen 830 QCLNIAVAH 838 (851)
T ss_pred HHHHHHHHH
Confidence 999877543
No 69
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=63.65 E-value=13 Score=35.49 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=25.9
Q ss_pred CCCCccEEEEe---C--CcEEEEEcCChhhHHHHHHHHHHHh
Q 042453 45 KSDDRRFYIFT---A--TKTLHLRTNSRRDRVAWIQALVSTR 81 (666)
Q Consensus 45 ~~d~~~f~i~~---~--~~~~~lra~~~~~r~~Wi~al~~~~ 81 (666)
.++...|-|+. | +-++-|-|.|..+|+.|+++++.++
T Consensus 94 ~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~qq 135 (135)
T PF15405_consen 94 SDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQQ 135 (135)
T ss_dssp --TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhcC
Confidence 45566666665 3 2357899999999999999999874
No 70
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=62.58 E-value=28 Score=32.29 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=48.7
Q ss_pred CCceeEEec----cCCccceeEEeeeeEEee-cCCCC--ccEEEEeCC-cEEEEEcCChhhHHHHHHHHHHH
Q 042453 17 LPGSHFLSS----VGSLAFGDLEGIISSFRE-SKSDD--RRFYIFTAT-KTLHLRTNSRRDRVAWIQALVST 80 (666)
Q Consensus 17 ~~~l~y~~~----~~~~~~G~i~L~~a~i~~-~~~d~--~~f~i~~~~-~~~~lra~~~~~r~~Wi~al~~~ 80 (666)
+..|+.... .|-.-.|.+-|++.+|.- .+.+. ..|-|+-.. .++.+-+.+.+|-++|+.-|+.-
T Consensus 37 p~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 37 PNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred CceEEEEEcCCCccceEEeeeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhh
Confidence 444555442 334667999999999983 44444 789998765 78999999999999999999864
No 71
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=59.19 E-value=9.4 Score=47.60 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=52.1
Q ss_pred ccceeEEeeeeEEeecCCCCccEEEEeC----CcEEEEEcCChhhHHHHHHHHHHHhHhCCcc
Q 042453 29 LAFGDLEGIISSFRESKSDDRRFYIFTA----TKTLHLRTNSRRDRVAWIQALVSTRSLYPLR 87 (666)
Q Consensus 29 ~~~G~i~L~~a~i~~~~~d~~~f~i~~~----~~~~~lra~~~~~r~~Wi~al~~~~~~~~~~ 87 (666)
+..+.|.|....|++..-|.+-|.|.+. --++.|.|.+++||..||+-+++|...++..
T Consensus 665 ~~spVisL~~livRevAtd~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 665 KKSPVISLQKLIVREVATDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred cCCCceehHHHHHHHHhccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 3678899999999999999998887764 3569999999999999999999999999964
No 72
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=54.65 E-value=22 Score=32.78 Aligned_cols=34 Identities=38% Similarity=0.556 Sum_probs=29.5
Q ss_pred CCCccEEEEeCCc--EEEEEcCChhhHHHHHHHHHH
Q 042453 46 SDDRRFYIFTATK--TLHLRTNSRRDRVAWIQALVS 79 (666)
Q Consensus 46 ~d~~~f~i~~~~~--~~~lra~~~~~r~~Wi~al~~ 79 (666)
..+-.|.|-||+. +-.||.++.+|...|.+||+.
T Consensus 72 ~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 72 QRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 4456799999985 689999999999999999974
No 73
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=48.48 E-value=53 Score=29.18 Aligned_cols=46 Identities=13% Similarity=0.087 Sum_probs=32.8
Q ss_pred eeeeEEeecCCCCccEEEEeCCcEEEEEcCChhhHHHHHHHHHHHhH
Q 042453 36 GIISSFRESKSDDRRFYIFTATKTLHLRTNSRRDRVAWIQALVSTRS 82 (666)
Q Consensus 36 L~~a~i~~~~~d~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~~~~ 82 (666)
|+.......+.|+.-|+++- +|+++..|.+..||...|..|-..-.
T Consensus 44 L~~I~~~~~~~~~~~F~l~~-~k~y~W~a~s~~Ek~~Fi~~L~k~~~ 89 (91)
T PF15277_consen 44 LKAIDGINPDKDTPEFDLTF-DKPYYWEASSAKEKNTFIRSLWKLYQ 89 (91)
T ss_dssp --EEEE-SSS--TTEEEEES-SSEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ceeeeeecCCCCCcCEEEEE-CCCcEEEeCCHHHHHHHHHHHHHHhc
Confidence 44444444444678999999 56999999999999999999876533
No 74
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=48.06 E-value=32 Score=41.19 Aligned_cols=68 Identities=6% Similarity=0.043 Sum_probs=48.6
Q ss_pred cCCCceeEEeccCCccceeEEeeeeEEe---------ecCCCCccEEEEe------CCcEEEEEcCChhhHHHHHHHHHH
Q 042453 15 LTLPGSHFLSSVGSLAFGDLEGIISSFR---------ESKSDDRRFYIFT------ATKTLHLRTNSRRDRVAWIQALVS 79 (666)
Q Consensus 15 ~~~~~l~y~~~~~~~~~G~i~L~~a~i~---------~~~~d~~~f~i~~------~~~~~~lra~~~~~r~~Wi~al~~ 79 (666)
|....|.||+.+-... .|.||-..|. --.-..+.|+|.+ ..+.+.|-|.+.+|=.+|++|++.
T Consensus 30 l~~~~~~~yK~~P~~~--~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~ 107 (719)
T PLN00188 30 LESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIES 107 (719)
T ss_pred EecchhhhcccCCccc--cccceeeccCCCceEeecCceEEcCceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHHH
Confidence 4567899999755333 4555555443 2233445666665 356799999999999999999999
Q ss_pred HhHhC
Q 042453 80 TRSLY 84 (666)
Q Consensus 80 ~~~~~ 84 (666)
|++..
T Consensus 108 a~~q~ 112 (719)
T PLN00188 108 VIDQH 112 (719)
T ss_pred HHhhh
Confidence 99964
No 75
>PF15404 PH_4: Pleckstrin homology domain
Probab=47.65 E-value=17 Score=36.54 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=20.9
Q ss_pred CCcEEEEEcCChhhHHHHHHHHHH
Q 042453 56 ATKTLHLRTNSRRDRVAWIQALVS 79 (666)
Q Consensus 56 ~~~~~~lra~~~~~r~~Wi~al~~ 79 (666)
-+|.+=|+|+|+.||..||-||..
T Consensus 160 ~gks~VF~ARSRqERD~WV~~I~~ 183 (185)
T PF15404_consen 160 SGKSMVFMARSRQERDLWVLAINT 183 (185)
T ss_pred CCcEEEEEeccHHHHHHHHHHHHh
Confidence 367789999999999999999864
No 76
>PLN02866 phospholipase D
Probab=44.08 E-value=78 Score=39.71 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=53.2
Q ss_pred ceeeeeeeecCCCceeEE-eccCCccceeEEeee--------------eEE-eecCCCCccEEEEeCCcEEEEEcCChhh
Q 042453 6 EKLRIFFELLTLPGSHFL-SSVGSLAFGDLEGII--------------SSF-RESKSDDRRFYIFTATKTLHLRTNSRRD 69 (666)
Q Consensus 6 ~~~~~~~~~~~~~~l~y~-~~~~~~~~G~i~L~~--------------a~i-~~~~~d~~~f~i~~~~~~~~lra~~~~~ 69 (666)
|+=|-|| +..+.|.|+ +.-+++++-+|-... |.- .+...=.-.|.|.+++.++.|++.|...
T Consensus 218 w~k~w~v--~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~~~s~~~ 295 (1068)
T PLN02866 218 WQKVWAV--LKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGNRSIRLRTKSSAK 295 (1068)
T ss_pred hheeEEE--EeccEEEEEecCCCCceeEEEEEecccccccCCCcceeecccccccCCCcceEEEecCceEEEEEECCHHH
Confidence 5555555 567889998 555566655443331 110 1111224478899999999999999999
Q ss_pred HHHHHHHHHHHhHhCC
Q 042453 70 RVAWIQALVSTRSLYP 85 (666)
Q Consensus 70 r~~Wi~al~~~~~~~~ 85 (666)
=..|+.|++.+..+.+
T Consensus 296 ~~~w~~ai~~~~~~~~ 311 (1068)
T PLN02866 296 VKDWVAAINDAGLRPP 311 (1068)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999986544
No 77
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=39.25 E-value=28 Score=41.25 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=58.6
Q ss_pred ceeeeeeeecCCCceeEEeccCC---ccceeEEeeeeEEeecCCCCccEEEEeCCcEEEEEcCChhhHHHHHHHHHHHhH
Q 042453 6 EKLRIFFELLTLPGSHFLSSVGS---LAFGDLEGIISSFRESKSDDRRFYIFTATKTLHLRTNSRRDRVAWIQALVSTRS 82 (666)
Q Consensus 6 ~~~~~~~~~~~~~~l~y~~~~~~---~~~G~i~L~~a~i~~~~~d~~~f~i~~~~~~~~lra~~~~~r~~Wi~al~~~~~ 82 (666)
||-|-||+. .+-..||.+.++ .+.|.|++.---+....+-.-.|-.++.|+++.|-+++..--..||+-|++++.
T Consensus 265 lkrr~~v~k--~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 265 LKRRYVVFK--NGQISFYRKHNNRDEEPASKIDIRSVTKLEQQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred HHhHheeec--cceEEEEEcCCCccccccCcccccccceeeccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHH
Confidence 444445433 344566666654 555666666666666777788999999999999999999999999999999977
Q ss_pred hCCc
Q 042453 83 LYPL 86 (666)
Q Consensus 83 ~~~~ 86 (666)
--..
T Consensus 343 v~~~ 346 (936)
T KOG0248|consen 343 ATTL 346 (936)
T ss_pred HHhc
Confidence 6544
No 78
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=38.58 E-value=24 Score=42.67 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=57.3
Q ss_pred cceeeeeeeecCCCceeEEeccCC------ccceeEEeeeeEEeecCCC----CccEEEEeCCcEEEEEcCChhhHHHHH
Q 042453 5 DEKLRIFFELLTLPGSHFLSSVGS------LAFGDLEGIISSFRESKSD----DRRFYIFTATKTLHLRTNSRRDRVAWI 74 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~l~y~~~~~~------~~~G~i~L~~a~i~~~~~d----~~~f~i~~~~~~~~lra~~~~~r~~Wi 74 (666)
|.|=|.|||- .-+..|.++|- ...|.|-|. -..+..|+ +-.|+|.++.|+++.-|.++++..+|+
T Consensus 763 gLqqrmfFLf---sdillytsk~~~~~~~fri~g~lP~~--l~~en~en~~s~p~~~ti~~~qk~i~vsast~~~sk~~~ 837 (1036)
T KOG3531|consen 763 GLQQRMFFLF---SDILLYTSKGPDVQKCFRINGDLPLT--LTMENSENEWSVPHCFTISGAQKQIYVSASTRRESKKWE 837 (1036)
T ss_pred cchhhhhhhh---hhhheeccCCCChhheeEeccCCceE--eeeecccccccCCceEEEeccceEEEEeccchhhhhhhh
Confidence 4566777763 33556777772 455777777 22233333 488999999999999999999999999
Q ss_pred HHHHHHhHhCCc
Q 042453 75 QALVSTRSLYPL 86 (666)
Q Consensus 75 ~al~~~~~~~~~ 86 (666)
..++.+++..++
T Consensus 838 ~~r~~~i~~~~k 849 (1036)
T KOG3531|consen 838 FDRRKAIDLAPK 849 (1036)
T ss_pred hccchhhhhccc
Confidence 999988887764
No 79
>KOG0689 consensus Guanine nucleotide exchange factor for Rho and Rac GTPases [Signal transduction mechanisms]
Probab=33.55 E-value=37 Score=38.76 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=39.4
Q ss_pred EEeeeeEEeec---CCCCccEEEEeCCc----EEEEEcCChhhHHHHHHHHHHHhHh
Q 042453 34 LEGIISSFRES---KSDDRRFYIFTATK----TLHLRTNSRRDRVAWIQALVSTRSL 83 (666)
Q Consensus 34 i~L~~a~i~~~---~~d~~~f~i~~~~~----~~~lra~~~~~r~~Wi~al~~~~~~ 83 (666)
-|.|++.++.. +.+++||-|..... ++-|+|.|.+++++|++++-....+
T Consensus 306 ~~ik~~~lgle~n~~~s~~rF~i~~r~~~~~~~~vlqa~s~~~k~~W~~~i~~~l~~ 362 (448)
T KOG0689|consen 306 QHIKVNDLGLEENNDNSASRFEIWFRGRKKREAYVLQAGSKEIKYAWTRAISSLLWQ 362 (448)
T ss_pred cchhhhheeeeccCCCCCcchhhhhhcccccceeEEeeCCHHHHHHHHHHHHHHHHH
Confidence 45666666654 78999999988643 5999999999999999988666444
No 80
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=32.37 E-value=39 Score=39.53 Aligned_cols=49 Identities=22% Similarity=0.376 Sum_probs=42.2
Q ss_pred eEEeeeeEEeecCCCCccEE--EEeC--CcEEEEEcCChhhHHHHHHHHHHHh
Q 042453 33 DLEGIISSFRESKSDDRRFY--IFTA--TKTLHLRTNSRRDRVAWIQALVSTR 81 (666)
Q Consensus 33 ~i~L~~a~i~~~~~d~~~f~--i~~~--~~~~~lra~~~~~r~~Wi~al~~~~ 81 (666)
.+.||-|+=|.-++=|+||- |.+. ..++.+||=++++|-.||+|+--+.
T Consensus 315 ~~~lKsC~RRktdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~e 367 (812)
T KOG1451|consen 315 TFKLKSCSRRKTDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAE 367 (812)
T ss_pred eEEehhhccCcccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCC
Confidence 38999999999999999975 4444 4679999999999999999998773
No 81
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.01 E-value=43 Score=38.96 Aligned_cols=61 Identities=10% Similarity=0.040 Sum_probs=48.1
Q ss_pred ceeEEeccCCccceeEEeeeeEEeecCCCC-ccEEEEe------CCcEEEEEcCChhhHHHHHHHHHHH
Q 042453 19 GSHFLSSVGSLAFGDLEGIISSFRESKSDD-RRFYIFT------ATKTLHLRTNSRRDRVAWIQALVST 80 (666)
Q Consensus 19 ~l~y~~~~~~~~~G~i~L~~a~i~~~~~d~-~~f~i~~------~~~~~~lra~~~~~r~~Wi~al~~~ 80 (666)
+++|++++ +.|-+.|.|+++-+.++=.|. -.|-|+. +...++||++++..=.+|+-|-+-|
T Consensus 390 ~~s~~~s~-~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCrLA 457 (664)
T KOG3727|consen 390 YKSSEDSR-GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACRLA 457 (664)
T ss_pred HhhHhhhc-CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhhHh
Confidence 56788899 899999999999998875553 3455543 4677999999999999999766555
No 82
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=25.64 E-value=1.5e+02 Score=29.25 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=19.1
Q ss_pred CCCCCCCCCCeEEEEecCCCeEEEe
Q 042453 364 CKPFNPLLGETYEADYPEKGVRFFS 388 (666)
Q Consensus 364 kKPfNPILGETFe~~~~d~g~rfia 388 (666)
+==|.|+.|+||.+..-++|..|++
T Consensus 85 ~cnF~pipG~iYhLY~r~~G~~ylS 109 (159)
T PF10504_consen 85 KCNFEPIPGQIYHLYRRENGQDYLS 109 (159)
T ss_pred ccCceecCCCEEEEEECCCCCEEEE
Confidence 3458999999999987666766654
No 83
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.61 E-value=1.7e+02 Score=29.94 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=36.1
Q ss_pred CCCCccEEEEeCCcEEEEE----------cCChhhHHHHHHHHHHHhHhCCccc
Q 042453 45 KSDDRRFYIFTATKTLHLR----------TNSRRDRVAWIQALVSTRSLYPLRT 88 (666)
Q Consensus 45 ~~d~~~f~i~~~~~~~~lr----------a~~~~~r~~Wi~al~~~~~~~~~~~ 88 (666)
.+.+.+|+-++|+-+||.- |.+...|+.=+--|+..+++|-+++
T Consensus 38 ~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFLe~Ik~~F~k~Y 91 (217)
T KOG0859|consen 38 SSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFLERIKEDFKKRY 91 (217)
T ss_pred CCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHHHHHHHHHHHHh
Confidence 3457799999999999976 5567888888899999999998765
No 84
>PF15411 PH_10: Pleckstrin homology domain
Probab=22.02 E-value=2.4e+02 Score=26.18 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=25.3
Q ss_pred CCCCccEEEEe----CCcEEEEEcCChhhHHHHHHHH
Q 042453 45 KSDDRRFYIFT----ATKTLHLRTNSRRDRVAWIQAL 77 (666)
Q Consensus 45 ~~d~~~f~i~~----~~~~~~lra~~~~~r~~Wi~al 77 (666)
..+.-.-+|+- +...|+||-++++.+..|-.||
T Consensus 80 ~~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 80 KPGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CCCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 34455667776 2355999999999999998875
No 85
>PF14254 DUF4348: Domain of unknown function (DUF4348); PDB: 3SBU_A.
Probab=20.76 E-value=1e+02 Score=32.86 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=24.0
Q ss_pred eeeeeeeeeeeeceeeEeecce-EEEEcC-CcceEEEeeeecc
Q 042453 445 SKVTTSIYNLILGKIYCDHHGT-MEIHGN-CQYSCKLKFKEQS 485 (666)
Q Consensus 445 ~~p~~~i~nli~G~~~ie~~G~-~~I~~~-tg~~a~i~Fk~k~ 485 (666)
..|...|.||+.|..|.+-... +.|+|- +|+..+|.|+.+|
T Consensus 224 ~lP~~~i~NI~YGQky~~s~~KIl~~rGi~NG~e~~l~Fk~~~ 266 (273)
T PF14254_consen 224 ELPKGKIYNINYGQKYTESNQKILVFRGIANGLETELYFKKRG 266 (273)
T ss_dssp ---SSEEEEEESS----T-SEEEEEEEESSS--EEEEEEEEET
T ss_pred cCCccceeeeecccccCCCCceEEEEEeecCceeEEEEEEEcC
Confidence 4578889999999999994433 344674 7999999999764
Done!