BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042458
(649 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XHN|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|2XHN|B Chain B, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|3NJV|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Substrate Complex
Length = 508
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 98/266 (36%), Gaps = 43/266 (16%)
Query: 353 YISASG--AYVGLAPPGDAG-----SWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYA 405
Y++ASG G A D+ W + Q+WT G F+ A++ G Y +
Sbjct: 251 YVAASGRGKVAGTASGADSSMDWVVHWYNDAA--QYWTYTSSSGSFTSPAMKPGTYTMVY 308
Query: 406 WVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPK 465
+ G+Y ++T + + G T+++IG D F
Sbjct: 309 YQ----GEYAV-ATSSVTVSAGSTTTKNISGSVKTGTTIFKIGEWDGQPTGF------RN 357
Query: 466 YINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQG 525
N+L + D + W G L YTVGSS T F K NN
Sbjct: 358 AANQLRMHPSDS--RMSSW---------GPLTYTVGSSALTD---FPMAVFKSVNNPVT- 402
Query: 526 STWQIKFELDDVNQSSTYKLRVAIA-SANLSELQVRINDPSTNRPLFSSGLIGRDNSIAR 584
IKF Q+ LR+ S Q IN + + P + L R + R
Sbjct: 403 ----IKFTATSA-QTGAATLRIGTTLSFAGGRPQATINSYTGSAPAAPTNLDSRG--VTR 455
Query: 585 HGIHGLYWLFNVDVPGARLVSGDNTI 610
GL +++V +P +V+G NTI
Sbjct: 456 GAYRGLGEVYDVSIPSGTIVAGTNTI 481
>pdb|3NJX|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant
H210a
Length = 508
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 98/266 (36%), Gaps = 43/266 (16%)
Query: 353 YISASG--AYVGLAPPGDAG-----SWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYA 405
Y++ASG G A D+ W + Q+WT G F+ A++ G Y +
Sbjct: 251 YVAASGRGKVAGTASGADSSMDWVVHWYNDAA--QYWTYTSSSGSFTSPAMKPGTYTMVY 308
Query: 406 WVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPK 465
+ G+Y ++T + + G T+++IG D F
Sbjct: 309 YQ----GEYAV-ATSSVTVSAGSTTTKNISGSVKTGTTIFKIGEWDGQPTGF------RN 357
Query: 466 YINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQG 525
N+L + D + W G L YTVGSS T F K NN
Sbjct: 358 AANQLRMHPSDS--RMSSW---------GPLTYTVGSSALTD---FPMAVFKSVNNPVT- 402
Query: 526 STWQIKFELDDVNQSSTYKLRVAIA-SANLSELQVRINDPSTNRPLFSSGLIGRDNSIAR 584
IKF Q+ LR+ S Q IN + + P + L R + R
Sbjct: 403 ----IKFTATSA-QTGAATLRIGTTLSFAGGRPQATINSYTGSAPAAPTNLDSRG--VTR 455
Query: 585 HGIHGLYWLFNVDVPGARLVSGDNTI 610
GL +++V +P +V+G NTI
Sbjct: 456 GAYRGLGEVYDVSIPSGTIVAGTNTI 481
>pdb|1NKG|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus
Length = 508
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 98/266 (36%), Gaps = 43/266 (16%)
Query: 353 YISASG--AYVGLAPPGDAG-----SWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYA 405
Y++ASG G A D+ W + Q+WT G F+ A++ G Y +
Sbjct: 251 YVAASGRGKVAGTASGADSSMDWVVHWYNDAA--QYWTYTSSSGSFTSPAMKPGTYTMVY 308
Query: 406 WVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPK 465
+ G+Y ++T + + G T+++IG D F
Sbjct: 309 YQ----GEYAV-ATSSVTVSAGSTTTKNISGSVKTGTTIFKIGEWDGQPTGF------RN 357
Query: 466 YINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQG 525
N+L + D + W G L YTVGSS T F K NN
Sbjct: 358 AANQLRMHPSDS--RMSSW---------GPLTYTVGSSALTD---FPMAVFKSVNNPVT- 402
Query: 526 STWQIKFELDDVNQSSTYKLRVAIA-SANLSELQVRINDPSTNRPLFSSGLIGRDNSIAR 584
IKF Q+ LR+ S Q IN + + P + L R + R
Sbjct: 403 ----IKFTATSA-QTGAATLRIGTTLSFAGGRPQATINSYTGSAPAAPTNLDSRG--VTR 455
Query: 585 HGIHGLYWLFNVDVPGARLVSGDNTI 610
GL +++V +P +V+G NTI
Sbjct: 456 GAYRGLGEVYDVSIPSGTIVAGTNTI 481
>pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
Length = 340
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 175 RVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHIT 234
+V + + L E ++PVEP + GEV Y++ KD V + T F
Sbjct: 209 KVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRH----KDNGVQFGLITSVSQSFCSTC 264
Query: 235 PSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNA 277
+A + G L + V + F+ + + E+L +F A
Sbjct: 265 TAAALSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKA 307
>pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV7|B Chain B, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp
pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp
Length = 340
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 175 RVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHIT 234
+V + + L E ++PVEP + GEV Y++ KD V + T F
Sbjct: 209 KVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRH----KDNGVQFGLITSVSQSFCSTC 264
Query: 235 PSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNA 277
A + G L + V + F+ + + E+L +F A
Sbjct: 265 TRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKA 307
>pdb|1JZN|A Chain A, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|B Chain B, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|C Chain C, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|D Chain D, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1JZN|E Chain E, Crystal Structure Of A Galactose-Specific C-Type Lectin
pdb|1MUQ|A Chain A, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|B Chain B, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|C Chain C, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|D Chain D, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
pdb|1MUQ|E Chain E, X-Ray Crystal Structure Of Rattlesnake Venom Complexed
With Thiodigalactoside
Length = 135
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 347 EYISDDYISASGAYVGLAPPGDAGSWQ---RECKDYQFWTSADEDGY----FSITAVRAG 399
EYISD + ++GL SW+ R C DY W D Y F + V
Sbjct: 54 EYISDYHKGQENVWIGLRDKKKDFSWEWTDRSCTDYLTWDKNQPDHYQNKEFCVELVSLT 113
Query: 400 DYNLY 404
Y L+
Sbjct: 114 GYRLW 118
>pdb|3H05|A Chain A, The Crystal Structure Of A Putative Nicotinate-Nucleotide
Adenylyltransferase From Vibrio Parahaemolyticus
pdb|3H05|B Chain B, The Crystal Structure Of A Putative Nicotinate-Nucleotide
Adenylyltransferase From Vibrio Parahaemolyticus
Length = 177
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 481 YGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQS 540
Y L E+ E+YP D+ + +G ++ K F + + T ++K D+ +
Sbjct: 86 YALLEKIQEIYPTADITFVIGPDNFFKFAKFYKAEEITERWTVMACPEKVKIRSTDIRNA 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,548,566
Number of Sequences: 62578
Number of extensions: 1066146
Number of successful extensions: 1911
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1904
Number of HSP's gapped (non-prelim): 7
length of query: 649
length of database: 14,973,337
effective HSP length: 105
effective length of query: 544
effective length of database: 8,402,647
effective search space: 4571039968
effective search space used: 4571039968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)