BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042458
(649 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE
PE=1 SV=1
Length = 578
Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 152/619 (24%), Positives = 239/619 (38%), Gaps = 102/619 (16%)
Query: 5 AVNLLIQDRHVVLDNGILEVTFSYPGGI--VTGIRYNDIDNLLEVLND-ELNRGYWDLVW 61
AV L + + LDNG+L+V F G V N I L D + NR ++ +
Sbjct: 28 AVKLTLDGMNSTLDNGLLKVRFGADGSAKEVWKGGTNLISRLSGAARDPDKNRSFYLDYY 87
Query: 62 NAPGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRG 121
+ G+ + + VI + DQV +++ ++ + L ++ +M R
Sbjct: 88 SG-------GVNEFVP-ERLEVIKQTPDQVHLAY-------IDDQNGKLRLEYHLIMTRD 132
Query: 122 SSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQ 181
SG Y+Y + + P + E R ++ + + N R RG
Sbjct: 133 VSGLYSYVVAANTGSAP-VTVSELRNVYRFDATRLDTLF---NSIR-----------RGT 177
Query: 182 PLAYPEAVLLVNPVEPDFK---GEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAE 238
PL Y E L + ++ G V KY ++ ++ W G W + S E
Sbjct: 178 PLLYDELEQLPKVQDETWRLPDGSVYSKYDFAGYQRESRY--WGVMGNGYGAWMVPASGE 235
Query: 239 FRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDG 298
+ +G KQ L H L+ +H+ D+V A ++K++GP +Y N D
Sbjct: 236 YYSGDALKQELLVHQDAIILNYLTGSHFGTPDMV----AQPGFEKLYGPWLLYINQGNDR 291
Query: 299 DDPLSLWDDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASG 358
+ L D + E SWPY + +P+ QR VSGRL + A
Sbjct: 292 E----LVADVSRRAEHERASWPYRWLDDARYPR--QRATVSGRLRTE----------APH 335
Query: 359 AYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPG--FIGDYRY 416
A V L A ++ + Y F + DG FS++ V G+Y L A+ G IG
Sbjct: 336 ATVVLN--SSAENFDIQTTGYLFSARTNRDGRFSLSNVPPGEYRLSAYADGGTQIGLLAQ 393
Query: 417 DVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPD 476
V G +G + P P W IG DR A EF + D+P
Sbjct: 394 QTVR--VEGKKTRLGQIDARQP--APLAWAIGQADRRADEFR------------FGDKPR 437
Query: 477 RFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDD 536
++R W+ DL + +G S KDW++ Q Q +W I F
Sbjct: 438 QYR----WQTEVP----ADLTFEIGKSRERKDWYYAQT---------QPGSWHILFNTRT 480
Query: 537 VNQSSTYKLRVAIASANLSELQVRINDP----STNRPLFSSGLIGRDNSIARHGIH-GLY 591
Q Y L +AIA+A+ + + + P N L ++ D SI R + G Y
Sbjct: 481 PEQP--YTLNIAIAAASNNGMTTPASSPQLAVKLNGQLLTTLKYDNDKSIYRGAMQSGRY 538
Query: 592 WLFNVDVPGARLVSGDNTI 610
++ +P L G N I
Sbjct: 539 HEAHIPLPAGALQQGGNRI 557
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB
PE=2 SV=2
Length = 660
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 162/678 (23%), Positives = 264/678 (38%), Gaps = 102/678 (15%)
Query: 12 DRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRG 71
D +VL+N L TF G + + Y D + L + G + + P T G
Sbjct: 26 DTSIVLENDRLRATFDKGRGSIIDL-YLDGQDFLGPQSGSTGIGPYLDCYCTPSGFYTAG 84
Query: 72 IFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNID-KRFVMLR-GSSGFYTYS 129
S N + E + + T+ L P + +++ LR G +GF+ +S
Sbjct: 85 --------STNPVTELVQGTDSTGTKYAGIILNDTYTPTGQEFQQYWFLRDGETGFHMFS 136
Query: 130 IYEHLEEWPGF--NLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPE 187
+ E F NL E R F+ D + ++ +D + PLP D + + +
Sbjct: 137 RLAYYNETTPFLRNLQELRTLFRPNTDLWTHLTSSD--LQTAPLPSDEAI--AEQIVVQD 192
Query: 188 AVLLVNPVEPDFK----GEVDDKYQYSCDNKDINVHGW-----ICTDPPVGFWHITPSAE 238
A +N D E KY +S +D +VHG G W + + +
Sbjct: 193 ATWRLNNTPDDAYYQQFSEYFTKYTFSNHWRDNDVHGLYADGSTSDGTTYGAWLVMNTKD 252
Query: 239 FRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDG 298
GGP +LT V + VS H+ GE P G + + FGP F F+G
Sbjct: 253 TYYGGPLHSDLT--VDGIIYNYIVSNHH-GEG-TPNITNG--FDRTFGPQFYL----FNG 302
Query: 299 DDPLSLWDDAKMQMSVETESWPYSFPASD-----DFPKSDQRGNVSGRL-LVQDEYISDD 352
SL + S+ + SW F S + S QRG+V G + L ++
Sbjct: 303 GGSSSLEELRDEARSLASPSWNADFYDSIAKHVIGYVPSSQRGSVKGTIKLPKNAKSPIA 362
Query: 353 YISASGAYV--GLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGF 410
++ G Y A P +Q+W D++G FSI V AG Y L + G
Sbjct: 363 VLTVDGHYFQDNSAVP----------SSHQYWADIDKNGRFSIDRVVAGKYRLTVYADGI 412
Query: 411 IGDYRYD-VVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEF---YVPDP-NPK 465
GD+ D +VV I ++P G +W +G PD+S+ EF DP +P+
Sbjct: 413 FGDFTRDGIVVKARKSTSIKE---TWKPESAGTEIWRLGTPDKSSGEFRHGAARDPTHPR 469
Query: 466 YINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQ---VTRKKDNNT 522
+ P+ +G ++ ++ G + Y +G SD D+ V DN
Sbjct: 470 H-------PPEYLIYWGAYDWQSDF--PGGIDYMIGESDPATDFNTVHWAVFGPTPDNPV 520
Query: 523 YQGST---WQIKFELD----DVNQSSTYKLRVAIASANLSELQV-RINDPSTNRPLFS-- 572
+ +T W+I+F+L +++T +++A A A V ++P N PL S
Sbjct: 521 AESNTTHDWRIRFDLSAKQLHARKTATLTIQLAGAKAASGNTDVYNASEPYANLPLRSYI 580
Query: 573 -------SGLIGRDNS---IARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRSTSPFQ 622
+ +IG D S I R + + P + L G N + P + + ++
Sbjct: 581 NEQEEPLTMVIGYDQSSSCIVRSAVSCYQVREKWEFPASWLKEGSNLLRLSLPTNGTNYE 640
Query: 623 G--------IMYDYIRFE 632
+ YD +R E
Sbjct: 641 SAVLPTSVYVQYDALRLE 658
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1
Length = 660
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 167/699 (23%), Positives = 262/699 (37%), Gaps = 131/699 (18%)
Query: 5 AVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAP 64
A+N+ + + L N L FS G +V Y D +LL + G + + P
Sbjct: 20 ALNVSQTNSSITLANDRLTAIFSNAGKVVD--LYLDGQDLLGPASGSTGVGPYLDCYCTP 77
Query: 65 ------GSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNID-KRFV 117
GST R +V+QGT + + T+ L P +++
Sbjct: 78 KGFYTAGSTTPR--MEVVQGT------------DATGTQYAGVILNDTYTPTGQQFQQYW 123
Query: 118 MLR-GSSGFYTYSIYEHLEEWPGF--NLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDD 174
LR G +G + +S + E F NL E R F+ D + ++ ++ + PLP D
Sbjct: 124 FLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLFRPNTDLWTHLTSSE--LQTAPLPSD 181
Query: 175 RVPPRGQPLAYPEAVLLVNPVEPDFK----GEVDDKYQYSCDNKDINVHGW-----ICTD 225
G+ + +A N D E KY +S +D NVHG
Sbjct: 182 EA--VGKQVVVQDATWRFNNTPNDAYYTQFSEYFTKYTFSNAWRDNNVHGLYADGSTSNG 239
Query: 226 PPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVF 285
G W + + + GGP +LT V + VS H+ GE P G + + F
Sbjct: 240 TTFGAWLVMNTKDTYYGGPLHSDLT--VDGIVYNYIVSNHH-GEG-TPNITNG--FDRTF 293
Query: 286 GPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASD-----DFPKSDQRGNVSG 340
GP F F+G SL + S+ SW F S + S +RG+V G
Sbjct: 294 GPQFYL----FNGGGSSSLNELRSEAESLADPSWNVEFYDSIAKHVVGYVPSSKRGSVQG 349
Query: 341 R-------------LLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADE 387
+ L V +Y D+ + + + YQ+W D
Sbjct: 350 QIKLPRGATRPIAILTVDGQYFQDNSV--------------------DPRSYQYWVEMDA 389
Query: 388 DGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEI 447
+G F + V G Y L + G GDY D V G + ++P G +W +
Sbjct: 390 NGKFQLDHVVEGKYRLTVYADGIFGDYVRDGVQ--VRGRKTTRINDSWQPESAGVEVWRL 447
Query: 448 GIPDRSAAEFY---VPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSD 504
G PD+S+ EF DP L P+ +G ++ + + +P+G + YT+GSSD
Sbjct: 448 GTPDKSSGEFLHGVARDPTHP------LHPPEYLIYWGAYD-WQQDFPNG-VNYTIGSSD 499
Query: 505 YTKDWFFVQVTR---KKDNNTYQGST---WQIKFEL--DDVNQSSTYKLRVAIASANLSE 556
D+ V + DN + T W I F L + + T L + +A A +
Sbjct: 500 PATDFNTVHWSVFGPTPDNPDVEYDTTHDWAINFSLTKKQLQKRKTATLTIQLAGAKTAS 559
Query: 557 LQVRI---NDPSTNRPLFS---------SGLIGRDNS---IARHGIHGLYWLFNVDVPGA 601
+ ++P TN L S + LIG + S I R + + P
Sbjct: 560 GNTDVYKPDEPYTNLALESYINQQEEPLTMLIGFNQSSSCIVRSAVSCYQVRSRMTFPAD 619
Query: 602 RLVSGDNTIFFIQPRSTSPFQG--------IMYDYIRFE 632
L G NT+ PR+ + + + YD +R E
Sbjct: 620 WLQVGSNTLTLHLPRNATDVEDAILPGTVYVQYDALRLE 658
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=rglB PE=3 SV=1
Length = 663
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 135/586 (23%), Positives = 222/586 (37%), Gaps = 112/586 (19%)
Query: 114 KRFVMLR-GSSGFYTYSIYEHLEEWPGF--NLGETRIAFKLRKDKFHYMAIADNRQRYMP 170
+++ LR G +G +T+S + E F NL E R F+ + + ++ ++ + P
Sbjct: 121 QQYWFLRDGETGLHTFSRLAYYNETTPFLRNLQEFRTLFRPNTELWTHLTSSEAQT--AP 178
Query: 171 LPDDRVPPRGQPLAYPEAVLLVNPVEPDFK----GEVDDKYQYSCDNKDINVHGWIC--- 223
LP + +A N D E KY +S +D +VHG
Sbjct: 179 LPSKEAI--ANEVVVQDATWRFNNTPNDAYYTQFSEYFTKYTFSNLWRDNSVHGLYADGT 236
Query: 224 --TDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAW 281
G W + + + GGP +LT V + VS H+ GE P G +
Sbjct: 237 NSNGTTYGAWLVMNTKDTYYGGPLHSDLT--VDGIVYNYLVSNHH-GEG-TPNITNG--F 290
Query: 282 KKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASD-----DFPKSDQRG 336
+ FGP + N SL D ++ W F S + S +RG
Sbjct: 291 DRTFGPQYYLFNGGKGSKS--SLEDLRSEAETLADPGWNADFYDSIAKHVIGYAPSSKRG 348
Query: 337 NVSGR-------------LLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWT 383
+V G+ L V +Y D+ + AS +Q+W
Sbjct: 349 SVQGQVKLPKGSTRPIAILTVDGQYFQDNSVEAS--------------------SHQYWA 388
Query: 384 SADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDL-----VYEPP 438
+DG F + V+ G Y L + G GD+ +D G ++ G + +E
Sbjct: 389 EMGQDGTFQLDHVKEGKYRLTVFADGIFGDFVHD-------GVEVQAGKVTKVQETWEQE 441
Query: 439 RNGPTLWEIGIPDRSAAEFYVPD-PNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLV 497
G +W +G PD+S+ EF D P+P + L P F +G ++ + + +P+G +
Sbjct: 442 SAGVEVWRLGTPDKSSGEFLHGDAPDPTHP----LHPPQHFIYWGAYD-WQQDFPNG-VN 495
Query: 498 YTVGSSD-----YTKDWFFVQVTRKKDNNTYQGST-WQIKFELD--DVNQSSTYKLRVAI 549
YT+GSSD T W T + Y + W I F LD + Q T L + +
Sbjct: 496 YTIGSSDPAVDFNTVHWSVYGPTPANPDVEYDTTHDWTINFSLDKKQLQQRKTATLTIQL 555
Query: 550 ASANLSELQVRI---NDPSTNRPLFS---------SGLIGRDNS---IARHGIHGLYWLF 594
A A + + +P N L S + L+G + S I R +
Sbjct: 556 AGAKTAAGNTDVYNATEPYANLALESYINEQKEPLTLLVGFNQSSSCIVRSAVSCYQVRS 615
Query: 595 NVDVPGARLVSGDNTIFFIQPRSTSPFQG--------IMYDYIRFE 632
++ P L G+N + PR+ + ++ + YD +R E
Sbjct: 616 RMEFPADWLNVGNNVLTLHLPRNATDYETAVLPGTVYVQYDALRLE 661
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1
Length = 706
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 133/559 (23%), Positives = 221/559 (39%), Gaps = 100/559 (17%)
Query: 114 KRFVMLR-GSSGFYTYSIYEHLEEWPGF--NLGETRIAFKLRKDKFHYMAIADNRQRYMP 170
+++ LR G +G +T+S + E + NL E R F+ + + +++ ++ + P
Sbjct: 121 QQYWFLRDGETGLHTFSRLAYYNETTPYLRNLQEFRTLFRPNTELWTHLSSSEVQT--AP 178
Query: 171 LPDDRVPPRGQPLAYPEAVLLVN--PVEPDFKGEVD--DKYQYSCDNKDINVHGW----- 221
LP + + + +A N P + + D KY +S +D +VHG
Sbjct: 179 LPSKKA--VEEEVVVQDATWTFNNTPTDEYYVQFADYFTKYTFSNAWRDNSVHGMYADGS 236
Query: 222 ICTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAW 281
G W + + + GGP +LT V + VS H+ GE P G +
Sbjct: 237 TSNGSTFGAWLVMNTKDTYYGGPLHSDLT--VDGIVYNYLVSNHH-GEG-TPNITYG--F 290
Query: 282 KKVFGPVFVYCNSAFDGDDPLS-LWDDAKMQMSVETESWPYSFPASD-----DFPKSDQR 335
+ FGP + + N L L DA+ ++ SW F S + S QR
Sbjct: 291 DRTFGPQYYHFNGGKGSTASLQELKSDAE---TLADPSWNVDFYDSIAKHVVGYTPSSQR 347
Query: 336 GNVSGR-------------LLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFW 382
G+V G+ L V +Y D+ +++S YQ+W
Sbjct: 348 GSVQGKIKLPKGATRPIAVLTVDGQYFQDNSVNSS--------------------SYQYW 387
Query: 383 TSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGP 442
D+ G+FS+ V+ G Y L + G GD+ D V + G + + +E G
Sbjct: 388 AEIDDSGHFSVDHVKEGPYRLTVYADGIFGDFVRD-GVQVKAGKKTTIQE-TWEAESAGT 445
Query: 443 TLWEIGIPDRSAAEF---YVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYT 499
+W +G PD+S+ EF DP L P+ +G ++ ++ +PDG + YT
Sbjct: 446 EIWRLGTPDKSSGEFRHGVARDPTHP------LHPPEYLIYWGAYDWQSD-FPDG-INYT 497
Query: 500 VGSSDYTKD-----WFFVQVTRKKDNNTYQGST-WQIKFEL--DDVNQSSTYKLRVAIAS 551
+G+SD D W T Y + W I F L DD+ + S L + +A
Sbjct: 498 IGTSDPATDLNTVHWSVFGPTPNDPRVEYDTTHDWTINFPLSEDDLAERSKATLTIQLAG 557
Query: 552 ANLSELQVRI---NDPSTNRPLFS---------SGLIGRDNS---IARHGIHGLYWLFNV 596
A + + ++P TN L S + LIG + S I R + +
Sbjct: 558 AKAASGNTDVYNASEPYTNLALESYINDQAEPLTLLIGFNQSSSCIVRSAVSCYQVRSRM 617
Query: 597 DVPGARLVSGDNTIFFIQP 615
+ P L G+N + P
Sbjct: 618 EFPADWLKVGNNVLTLHLP 636
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=rglB PE=3 SV=1
Length = 658
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 138/585 (23%), Positives = 207/585 (35%), Gaps = 115/585 (19%)
Query: 114 KRFVMLR-GSSGFYTYSIYEHLEEWPGF--NLGETRIAFKLRKDKFHYMAIADNRQRYMP 170
+++ LR G +G + +S + E F NL E R F R + + + + + P
Sbjct: 121 QQYWFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLF--RPNTQLWTHLTSSELQTAP 178
Query: 171 LPDDRVPPRGQPLAYPEAVLLVNPVEPDFK----GEVDDKYQYSCDNKDINVHGWI---- 222
LP + + +A N D E KY +S +D +VHG
Sbjct: 179 LPSKNAVSK--QVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGT 236
Query: 223 -CTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAW 281
G W + T GP +LT V + VS H+ GE P G +
Sbjct: 237 NSNGSTYGAWLV-----MNTKGPLHSDLT--VDGIVYNYIVSNHH-GEG-TPNITNG--F 285
Query: 282 KKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASD-----DFPKSDQRG 336
+ FGP F N SL D + SW F S + S +RG
Sbjct: 286 DRTFGPQFYLFNGGKGSTS--SLQDLRSEAAKLADPSWNAEFYDSIAKHVVGYVPSSKRG 343
Query: 337 NVSGR-------------LLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWT 383
+V GR L V +Y D+ + S YQ+WT
Sbjct: 344 SVDGRIKLPKGASNPIAILTVDGQYFQDNSVVPS--------------------SYQYWT 383
Query: 384 SADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPT 443
D G F I V G Y L + G GD+ D V + G + + ++ G
Sbjct: 384 DIDTSGRFRIDRVVEGKYRLTVYADGIFGDFVRDGVT-VRAGKTTTVKE-KWDAESAGKE 441
Query: 444 LWEIGIPDRSAAEF---YVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTV 500
+W +G PD+S+ EF DP L P+ +G ++ ++ +P G + YT+
Sbjct: 442 IWRLGTPDKSSGEFRHGVARDPTHP------LHPPEYLIYWGAYDWQSD-FPKG-IDYTI 493
Query: 501 GSSDYTKD-----WFFVQVTRKKDNNTYQGST-WQIKFELDDVNQSSTYKLRVAI----- 549
GSSD D W T N Y + W+I F L ++ K + I
Sbjct: 494 GSSDPATDFNTVHWSVFGPTPDNPNVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGA 553
Query: 550 --ASANLSELQVR-----------INDPSTNRPL-FSSGLIGRDNSIARHGIHGLYWLFN 595
AS N E + IND PL F G + I R +
Sbjct: 554 KTASGNTDEYKASEPYINLIHESYIND--QKEPLSFVIGFNQSSSCIVRSAVSCYQVRSR 611
Query: 596 VDVPGARLVSGDNTIFFIQPRSTSPFQG--------IMYDYIRFE 632
++ P L G+NT+ P + + + + YD +R E
Sbjct: 612 MEFPADWLKVGENTLTLHLPYNATDTETAILPATVYVQYDALRLE 656
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3
SV=1
Length = 658
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 138/585 (23%), Positives = 207/585 (35%), Gaps = 115/585 (19%)
Query: 114 KRFVMLR-GSSGFYTYSIYEHLEEWPGF--NLGETRIAFKLRKDKFHYMAIADNRQRYMP 170
+++ LR G +G + +S + E F NL E R F R + + + + + P
Sbjct: 121 QQYWFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLF--RPNTQLWTHLTSSELQTAP 178
Query: 171 LPDDRVPPRGQPLAYPEAVLLVNPVEPDFK----GEVDDKYQYSCDNKDINVHGWI---- 222
LP + + +A N D E KY +S +D +VHG
Sbjct: 179 LPSKNAVSK--QVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGT 236
Query: 223 -CTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAW 281
G W + T GP +LT V + VS H+ GE P G +
Sbjct: 237 NSNGSTYGAWLV-----MNTKGPLHSDLT--VDGIVYNYIVSNHH-GEG-TPNITNG--F 285
Query: 282 KKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASD-----DFPKSDQRG 336
+ FGP F N SL D + SW F S + S +RG
Sbjct: 286 DRTFGPQFYLFNGGKGSTS--SLQDLRSEAAKLADPSWNAEFYDSIAKHVVGYVPSSKRG 343
Query: 337 NVSGR-------------LLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWT 383
+V GR L V +Y D+ + S YQ+WT
Sbjct: 344 SVDGRIKLPKGASNPIAILTVDGQYFQDNSVVPS--------------------SYQYWT 383
Query: 384 SADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPT 443
D G F I V G Y L + G GD+ D V + G + + ++ G
Sbjct: 384 DIDTSGRFRIDRVVEGKYRLTVYADGIFGDFVRDGVT-VRAGKTTTVKE-KWDAESAGKE 441
Query: 444 LWEIGIPDRSAAEF---YVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTV 500
+W +G PD+S+ EF DP L P+ +G ++ ++ +P G + YT+
Sbjct: 442 IWRLGTPDKSSGEFRHGVARDPTHP------LHPPEYLIYWGAYDWQSD-FPKG-IDYTI 493
Query: 501 GSSDYTKD-----WFFVQVTRKKDNNTYQGST-WQIKFELDDVNQSSTYKLRVAI----- 549
GSSD D W T N Y + W+I F L ++ K + I
Sbjct: 494 GSSDPATDFNTVHWSVFGPTPDNPNVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGA 553
Query: 550 --ASANLSELQVR-----------INDPSTNRPL-FSSGLIGRDNSIARHGIHGLYWLFN 595
AS N E + IND PL F G + I R +
Sbjct: 554 KTASGNTDEYKASEPYINLIHESYIND--QKEPLSFVIGFNQSSSCIVRSAVSCYQVRSR 611
Query: 596 VDVPGARLVSGDNTIFFIQPRSTSPFQG--------IMYDYIRFE 632
++ P L G+NT+ P + + + + YD +R E
Sbjct: 612 MEFPADWLKVGENTLTLHLPYNATDTETAILPATVYVQYDALRLE 656
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rglC PE=3 SV=1
Length = 1041
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 109/465 (23%), Positives = 174/465 (37%), Gaps = 61/465 (13%)
Query: 115 RFVMLRGS-SGFYTYSIYEHLEEWPGF--NLGETRIAFKLRKDKFHYMAIADNRQRYMPL 171
+++ LRG +G + +S + E F LGE R F+ + + + + ++ MPL
Sbjct: 121 QYLFLRGEETGLHAFSRVTYYNESDYFLRGLGELRTLFRPNTNLWTHFSGSEGNYGPMPL 180
Query: 172 PDDRVPPRGQPLAYPEAVLLVNPVEPD-FKGEVDD---KYQYSCDNKDINVHGWICTDPP 227
+ + +A + D + + D KY + +D +VHG
Sbjct: 181 SST------EKITVQDATTYLGDTTDDPYVSQYSDYFTKYTLTESWRDHDVHGHFSNGST 234
Query: 228 ------VGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAW 281
G W + + E GGP +L V + VS HY P N +
Sbjct: 235 SGDGNTYGAWLVHNTRETYYGGPLHADLV--VDGIVYNYIVSGHYG----APNPNLTHGF 288
Query: 282 KKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASD--DFPKSDQRGNVS 339
+ FGP + + NS G L DA S E + Y A ++ S R
Sbjct: 289 DRTFGPQYYHFNSGGPGTTLEELRADAAQYASPEWNAEFYDSIAKHIPNYVPSTGRTTFR 348
Query: 340 GRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKD-YQFWTSADEDGYFSITAVRA 398
G++ + A + L+ KD Q+W D G F+I V
Sbjct: 349 GKVNLPK--------GAKKPIIVLSENEQDFQLNVFKKDSLQYWAEIDGSGAFTIPRVVK 400
Query: 399 GDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEF- 457
G Y + + G + D V I + ++ G +W IG+PD+S+ EF
Sbjct: 401 GTYRVTIYADEIFGWFIKDNVKVIGS----NAHTFTWKEETAGKEIWRIGVPDKSSGEFL 456
Query: 458 --YVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKD-----WF 510
Y PD + QP+++R Y Y +P+G + Y VG SD KD W
Sbjct: 457 HGYAPDTSKPL-------QPEQYRIYWGKYDYPSDFPEG-VNYHVGKSDPAKDLNYIHWS 508
Query: 511 FV--QVTRKKDNNTYQG-STWQIKFEL--DDVNQSSTYKLRVAIA 550
F Q ++ YQ + W I F+L + + T V +A
Sbjct: 509 FFPSQGNHLRNEPYYQNVNNWTITFDLTASQLRNTKTATFTVQLA 553
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=rglB PE=3 SV=1
Length = 658
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 137/583 (23%), Positives = 210/583 (36%), Gaps = 111/583 (19%)
Query: 114 KRFVMLR-GSSGFYTYSIYEHLEEWPGF--NLGETRIAFKLRKDKFHYMAIADNRQRYMP 170
+++ LR G +G + +S + E F NL E R F R + + + + + P
Sbjct: 121 QQYWFLRDGETGLHMFSRLAYYNETTPFLRNLQEFRTLF--RPNTQLWTHLTSSELQTAP 178
Query: 171 LPDDRVPPRGQPLAYPEAVLLVNPVEPDFK----GEVDDKYQYSCDNKDINVHGWI---- 222
LP + + +A N D E KY +S +D +VHG
Sbjct: 179 LPSKNAVSK--QVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGT 236
Query: 223 -CTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAW 281
G W + T GP +LT V + VS H+ GE P G +
Sbjct: 237 NSNGSTYGAWLV-----MNTKGPLHSDLT--VDGIVYNYIVSNHH-GEG-TPNITNG--F 285
Query: 282 KKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPASD-----DFPKSDQRG 336
+ FGP F N SL D + SW F S + S +RG
Sbjct: 286 DRTFGPQFYLFNGGKGSTS--SLQDLRSEAAKLADPSWNAEFYDSIAKHVVGYVPSSKRG 343
Query: 337 NVSGR-------------LLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWT 383
+V GR L V +Y D+ + S YQ+WT
Sbjct: 344 SVDGRVKLPKGATNPIAILTVDGQYFQDNSVVPS--------------------SYQYWT 383
Query: 384 SADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPT 443
D G F I V G Y L + G GD+ D V + G + + ++ G
Sbjct: 384 DIDTSGKFRIDRVVEGKYRLTVYADGIFGDFVRDGVT-VKAGKTTTVKE-KWDAESAGKE 441
Query: 444 LWEIGIPDRSAAEF---YVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTV 500
+W +G PD+S+ EF DP L P+ +G ++ ++L P G + Y +
Sbjct: 442 VWRLGTPDKSSGEFRHGVARDPTHP------LHPPEYLIYWGAYDWQSDL-PKG-IDYRI 493
Query: 501 GSSDYTKDWFFVQVTR---KKDNNTYQGST---WQIKFEL--DDVNQSSTYKLRVAIASA 552
GSSD D+ V + DN + +T W+I F L + S L + +A A
Sbjct: 494 GSSDPATDFNTVHWSVFGPTPDNPDVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGA 553
Query: 553 ----------NLSELQVRINDPS----TNRPL-FSSGLIGRDNSIARHGIHGLYWLFNVD 597
N SE + ++ S PL F G + I R + ++
Sbjct: 554 KTASGNTDVYNASEPYINLSHESYINDQKEPLSFVIGFNQSSSCIVRSAVSCYQVRSRME 613
Query: 598 VPGARLVSGDNTIFFIQPRSTSPFQG--------IMYDYIRFE 632
P L G+NT+ P + + + + YD +R E
Sbjct: 614 FPADWLKVGENTLTLHLPYNATDTETAILPATVYVQYDALRLE 656
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1
Length = 695
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 109/474 (22%), Positives = 176/474 (37%), Gaps = 65/474 (13%)
Query: 114 KRFVMLRGS-SGFYTYSIYEHLEEW-PGF-NLGETRIAFKLRKDKFHYMAIADNRQRYMP 170
++ LRG +G + +S + E P +LGE R F+ D + + + +D P
Sbjct: 122 SQWFFLRGEETGLHAFSRVTYFNETTPSLRSLGELRTLFRPSTDLWTHFSTSDGNYGPKP 181
Query: 171 LPDDRVPPRGQPLAYPEAVLLVNPVEPD-FKGEVDD---KYQYSCDNKDINVHGWICTDP 226
L + L +A + V D + + D KY + ++ +VHG
Sbjct: 182 LGSN------SGLVVQDATTYIGNVTDDPYVSQYSDYFTKYTLAESWRNHDVHGLFSDGS 235
Query: 227 ------PVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEA 280
G W + + E GGP +L V + VS H+ P N
Sbjct: 236 SSSDGSTFGAWLVHNTVETYYGGPLHSDLV--VDGIVYNYLVSGHHG----APTPNLTHG 289
Query: 281 WKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPAS-----DDFPKSDQR 335
+ + +GP F Y N GD +L D W F S +F S R
Sbjct: 290 FDRTWGPQFYYFNR---GDSETTLADLRADAAKYADPEWNAEFYDSIADHIPNFTPSTGR 346
Query: 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQR-ECKDYQFWTSADEDGYFSIT 394
G++ + A + L+ G + Q+W D+ G FSI
Sbjct: 347 TTFKGKVSLPK--------GAKRPIIVLSEDGQDFQLNVFNTESLQYWAEIDKSGSFSIP 398
Query: 395 AVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSA 454
V G Y + + G + D V + D ++ G +W IGIPD+S+
Sbjct: 399 RVVEGTYRITIYADEIFGWFIQD-HVKVLKSQSKDY-SFTWKEESAGKEIWRIGIPDKSS 456
Query: 455 AEF---YVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKD--- 508
E+ Y PD + QP++ R Y Y +P+G + + VG SD ++D
Sbjct: 457 GEYLHGYAPDTSKPL-------QPEQHRIYWGKYDYPADFPEG-INFHVGKSDPSQDLNY 508
Query: 509 --WFFV--QVTRKKDNNTYQG-STWQIKFEL--DDVNQSSTYKLRVAIASANLS 555
W F Q + Y + W + F+L D ++ ++T V IA A +
Sbjct: 509 IHWAFFPSQGNHLRTEPYYDNVNNWTVTFDLTADQLHNTNTATFTVQIAGAKTA 562
>sp|B8NCU7|RGLA_ASPFN Probable rhamnogalacturonate lyase A OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=rglA PE=3 SV=1
Length = 528
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 98/238 (41%), Gaps = 40/238 (16%)
Query: 377 KDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRY-DVVVNITPGFDI--DMGDL 433
D Q+WT DG F+ A++ GDY + + G+Y+ + V++T G D+
Sbjct: 300 ADAQYWTYTSSDGSFTSPAMKPGDYTMVYYQ----GEYKVAETSVSVTAGSSTSKDISGF 355
Query: 434 VYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPD 493
V G T+++IG D + F + N+L + D + W
Sbjct: 356 V----ETGDTIFKIGDWDGTPTGFRNAE------NQLRMHPSD--SRMSSW--------- 394
Query: 494 GDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIA-SA 552
G L YTVGSS+ T F K N+ IKF Q+ LR+ S
Sbjct: 395 GPLTYTVGSSELTD---FPMAAFKGVNDPV-----TIKFTATSA-QTGAATLRIGTTLSF 445
Query: 553 NLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTI 610
Q IND + P + L R + R GL +++V++P +V G+NTI
Sbjct: 446 AGGRPQATINDYEGSAPSAPTNLNSR--GVTRGAYRGLGEVYDVNIPSGTIVEGENTI 501
>sp|Q2U0Q1|RGLA_ASPOR Probable rhamnogalacturonate lyase A OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=rglA PE=3 SV=1
Length = 528
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 36/236 (15%)
Query: 377 KDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRY-DVVVNITPGFDIDMGDLVY 435
D Q+WT DG F+ A++ GDY + + G+Y+ + V++T G +
Sbjct: 300 ADAQYWTYTSSDGSFTSPAMKPGDYTMVYYQ----GEYKVAETSVSVTVGSSTSKD--IS 353
Query: 436 EPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGD 495
G T+++IG D + F + N+L + D + W G
Sbjct: 354 GSVETGDTIFKIGDWDGTPTGFRNAE------NQLRMHPSD--SRMSSW---------GP 396
Query: 496 LVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIA-SANL 554
L YTVGSS+ T F K N+ IKF Q+ LR+ S
Sbjct: 397 LTYTVGSSELTD---FPMAAFKGVNDPV-----TIKFTATSA-QTGAATLRIGTTLSFAG 447
Query: 555 SELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTI 610
Q IND + P + L R + R GL +++V++P +V G+NTI
Sbjct: 448 GRPQATINDYEGSAPSAPTNLNSR--GVTRGAYRGLGEVYDVNIPSGTIVEGENTI 501
>sp|Q0CVU1|RGLA_ASPTN Probable rhamnogalacturonate lyase A OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=rglA PE=3 SV=2
Length = 531
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 88/233 (37%), Gaps = 36/233 (15%)
Query: 380 QFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRY-DVVVNITPGFDIDMGDLVYEPP 438
Q+WT DG F+ A++ G Y + + G+YR + V ++ G +
Sbjct: 303 QYWTYTASDGSFTSPAMKPGTYTMAYYQ----GEYRVAETSVTVSAGSSTTKN--ISGSV 356
Query: 439 RNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVY 498
+ G T+++IG D F L+ + R + R + P + Y
Sbjct: 357 KTGTTIFKIGDWDGQPTGF--------------LNADKQLRMHPSDSRMSSWGP---VTY 399
Query: 499 TVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIA-SANLSEL 557
TVGSS F K N S IKF Q+ LR+ S
Sbjct: 400 TVGSSSVGS---FPMALFKSVN-----SPVTIKFTATSA-QTGAATLRIGTTLSFAGGRP 450
Query: 558 QVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTI 610
Q IN + P + L R + R GL +++V +P +V+G NTI
Sbjct: 451 QATINSYTGPTPSAPTNLNSRG--VTRGAYRGLGEVYDVSIPAGTIVAGTNTI 501
>sp|Q8NJK5|RGLA_ASPNG Rhamnogalacturonate lyase A (Fragment) OS=Aspergillus niger GN=rglA
PE=3 SV=1
Length = 499
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 90/240 (37%), Gaps = 48/240 (20%)
Query: 378 DYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEP 437
D Q+WT G F+ A++ G Y + + ++ +V V+ D+ V
Sbjct: 300 DAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYV-VATSEVTVSAGSSTSKDISGSV--- 355
Query: 438 PRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPD---- 493
G T+++IG D QP FR E ++P
Sbjct: 356 -ETGTTIFKIGDWD---------------------GQPTGFRN---AENQLRMHPSDSRM 390
Query: 494 ---GDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKF-ELDDVNQSSTYKLRVAI 549
G L YTVGSS T F K N S IKF D ++T ++R +
Sbjct: 391 SDWGPLTYTVGSSSLTD---FPMAIFKSVN-----SPVTIKFTATSDQTGAATLRIRTTL 442
Query: 550 ASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNT 609
+ A Q IND + P + L R + R G +++V VP +V G+NT
Sbjct: 443 SFAG-GRPQATINDYEGSAPSAPTNLDSR--GVTRGAYRGYGDVYDVSVPEGTIVEGENT 499
>sp|Q00019|RGLA_ASPAC Rhamnogalacturonate lyase A OS=Aspergillus aculeatus GN=rglA PE=1
SV=1
Length = 527
Score = 37.4 bits (85), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 98/273 (35%), Gaps = 57/273 (20%)
Query: 353 YISASG--AYVGLAPPGDAG-----SWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYA 405
Y++ASG G A D+ W + Q+WT G F+ A++ G Y +
Sbjct: 270 YVAASGRGKVAGTASGADSSMDWVVHWYNDAA--QYWTYTSSSGSFTSPAMKPGTYTMVY 327
Query: 406 WVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPK 465
+ G+Y ++T + + G T+++IG D
Sbjct: 328 YQ----GEYAV-ATSSVTVSAGSTTTKNISGSVKTGTTIFKIGEWD-------------- 368
Query: 466 YINKLYLDQPDRFRQYGLWERYAELYPD-------GDLVYTVGSSDYTKDWFFVQVTRKK 518
QP FR R ++P G L YTVGSS T F K
Sbjct: 369 -------GQPTGFRNAANQLR---MHPSDSRMSSWGPLTYTVGSSALTD---FPMAVFKS 415
Query: 519 DNNTYQGSTWQIKFELDDVNQSSTYKLRVAIA-SANLSELQVRINDPSTNRPLFSSGLIG 577
NN IKF Q+ LR+ S Q IN + + P + L
Sbjct: 416 VNNPVT-----IKFTATSA-QTGAATLRIGTTLSFAGGRPQATINSYTGSAPAAPTNLDS 469
Query: 578 RDNSIARHGIHGLYWLFNVDVPGARLVSGDNTI 610
R + R GL +++V +P +V+G NTI
Sbjct: 470 RG--VTRGAYRGLGEVYDVSIPSGTIVAGTNTI 500
>sp|P78710|ASD1_NEUCR Putative rhamnogalacturonase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=asd-1 PE=2 SV=1
Length = 540
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 471 YLDQPDRFRQYGLWERYAELYPD-------GDLVYTVGSSDYTKDWFFVQVTRKKDNNTY 523
Y QP FR +++ ++P G L YTVGSS F K NN
Sbjct: 380 YDGQPTGFRN---ADKFLRMHPSDSRMSSWGPLTYTVGSSSLND---FPMAVFKSVNNPV 433
Query: 524 QGSTWQIKFELDDV-NQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSI 582
IKF L +Q++T ++ ++ A + QV +N S P + + R +
Sbjct: 434 T-----IKFNLGSAPSQATTLRIATTLSFAG-ARPQVVVNGWSAPAPAAPAKIDSRG--V 485
Query: 583 ARHGIHGLYWLFNVDVPGARLVSGDNTI 610
R G +++V VP +L+SG NTI
Sbjct: 486 TRGAYRGYGEVYDVAVPAGKLISGTNTI 513
>sp|Q4W9T6|RGLA_ASPFU Probable rhamnogalacturonate lyase A OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=rglA PE=3 SV=1
Length = 528
Score = 36.2 bits (82), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 46/240 (19%)
Query: 378 DYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRY-DVVVNITPGFDIDMGDLVYE 436
+ Q+WT DG F+ A++ G Y + + G+Y+ V+++ G +
Sbjct: 301 EAQYWTYTASDGSFTSPAMKPGTYTMVY----YQGEYKVASTSVSVSAGSTTTKN--ISG 354
Query: 437 PPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDL 496
G T+++IG D F N+L + D + + G L
Sbjct: 355 SVTTGKTIFKIGEWDGQPTGFR------NAANQLRMHPSD-----------SRMSSWGPL 397
Query: 497 VYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIA-SANLS 555
YTVGSS + F K N S IKF +Q+ LR+ S
Sbjct: 398 TYTVGSSSLSD---FPMAIFKSVN-----SPVTIKFTASS-SQTGAATLRIGTTLSFAGG 448
Query: 556 ELQVRIND-----PSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTI 610
QV +N PS + L S G + R GL +++V +P +V+G NTI
Sbjct: 449 RPQVTVNSWTGPIPSAPKDLNSRG-------VTRGAYRGLGEVYDVAIPAGTIVAGTNTI 501
>sp|B0YEH9|RGLA_ASPFC Probable rhamnogalacturonate lyase A OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglA PE=3
SV=1
Length = 528
Score = 36.2 bits (82), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 46/240 (19%)
Query: 378 DYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRY-DVVVNITPGFDIDMGDLVYE 436
+ Q+WT DG F+ A++ G Y + + G+Y+ V+++ G +
Sbjct: 301 EAQYWTYTASDGSFTSPAMKPGTYTMVY----YQGEYKVASTSVSVSAGSTTTKN--ISG 354
Query: 437 PPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDL 496
G T+++IG D F N+L + D + + G L
Sbjct: 355 SVTTGKTIFKIGEWDGQPTGFR------NAANQLRMHPSD-----------SRMSSWGPL 397
Query: 497 VYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIA-SANLS 555
YTVGSS + F K N S IKF +Q+ LR+ S
Sbjct: 398 TYTVGSSSLSD---FPMAIFKSVN-----SPVTIKFTASS-SQTGAATLRIGTTLSFAGG 448
Query: 556 ELQVRIND-----PSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTI 610
QV +N PS + L S G + R GL +++V +P +V+G NTI
Sbjct: 449 RPQVTVNSWTGPIPSAPKDLNSRG-------VTRGAYRGLGEVYDVAIPAGTIVAGTNTI 501
>sp|A2R2L1|RGLA_ASPNC Probable rhamnogalacturonate lyase A OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=rglA PE=3 SV=2
Length = 531
Score = 36.2 bits (82), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 90/241 (37%), Gaps = 48/241 (19%)
Query: 378 DYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEP 437
D Q+WT G F+ A++ G Y + + ++ +V V+ D+ V
Sbjct: 301 DAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYV-VATSEVTVSAGSSTSKDISGSV--- 356
Query: 438 PRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPD---- 493
G T+++IG D QP FR E ++P
Sbjct: 357 -ETGTTIFKIGDWD---------------------GQPTGFRN---AENQLRMHPSDSRM 391
Query: 494 ---GDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKF-ELDDVNQSSTYKLRVAI 549
G L YTVGSS T F K N S IKF D ++T ++ +
Sbjct: 392 SDWGPLTYTVGSSSLTD---FPMAIFKSVN-----SPVTIKFTATSDQTGAATLRIGTTL 443
Query: 550 ASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNT 609
+ A Q IND + P + L R + R G +++V VP +V G+NT
Sbjct: 444 SFAG-GRPQATINDYEGSAPSAPTNLDSR--GVTRGAYRGYGDVYDVSVPEGTIVEGENT 500
Query: 610 I 610
I
Sbjct: 501 I 501
>sp|A1D9P9|RGLA_NEOFI Probable rhamnogalacturonate lyase A OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=rglA PE=3 SV=1
Length = 528
Score = 35.8 bits (81), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 91/240 (37%), Gaps = 46/240 (19%)
Query: 378 DYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRY-DVVVNITPGFDIDMGDLVYE 436
+ Q+WT DG F+ A++ G Y + + G+Y+ V+++ G +
Sbjct: 301 EAQYWTYTASDGSFTSPAMKPGTYTMVYYQ----GEYKVASTSVSVSAGSTTTKN--ISG 354
Query: 437 PPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDL 496
G T+++IG D F + ++ R + R A P L
Sbjct: 355 SVTTGKTIFKIGEWDGQPTGF--------------RNAANQLRMHPSDSRMASWGP---L 397
Query: 497 VYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIA-SANLS 555
YTVGSS + F K N S IKF +Q+ LR+ S
Sbjct: 398 TYTVGSSSLSD---FPMAIFKSTN-----SPVTIKFTASS-SQTGAATLRIGTTLSFAGG 448
Query: 556 ELQVRIND-----PSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTI 610
Q ++N PS + L S G + R G +++V +P +V+G NTI
Sbjct: 449 RPQAKVNSFTGPVPSAPKDLNSRG-------VTRGAYRGFGEVYDVAIPAGTIVAGTNTI 501
>sp|P0CZ01|HYSA_PROAC Hyaluronate lyase OS=Propionibacterium acnes (strain KPA171202 /
DSM 16379) GN=PPA0380 PE=3 SV=1
Length = 813
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 9 LIQDRHVVLDNGILEVTFS-----YPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNA 63
IQ H+ G +V FS +P +V+G+R++ +++ + +D++ RG+ +++N
Sbjct: 269 FIQHSHIPYTGGYGDVLFSGLAMLFP--LVSGMRFDIVESARKAFHDQVERGFIPVMYNG 326
Query: 64 PGSTGTRGIFDVIQGTSFNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRG-S 122
I D ++G S + I E+ IS R + +P + R RG
Sbjct: 327 Q-------ILDDVRGRSISRINESAAMHGISIARAM--LMMADALPTH---RAEQWRGIV 374
Query: 123 SGFYTYSIYEHLEE 136
G+ + ++HL E
Sbjct: 375 HGWMARNTFDHLSE 388
>sp|A1C995|RGLA_ASPCL Probable rhamnogalacturonate lyase A OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=rglA PE=3 SV=1
Length = 528
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 89/240 (37%), Gaps = 50/240 (20%)
Query: 380 QFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRY-DVVVNITPGFDIDMGDLVYEPP 438
Q+WT DG F+ A++ G Y + + G+Y+ + V + G I +
Sbjct: 303 QYWTYTASDGSFTSPAMKPGTYTMVYYQ----GEYKVAETSVTVRAGSKITKN--ISGSV 356
Query: 439 RNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPD----- 493
+ G T+++IG D QP FR ++ ++P
Sbjct: 357 KTGKTIFKIGEWD---------------------GQPTGFRNA---DKQLRMHPSDSRMA 392
Query: 494 --GDLVYTVGSSDYTKDWFFVQVTRKKDNNTYQGSTWQIKFELDDVNQSSTYKLRVAIA- 550
G L YTVG S + F K NN IKF ++ LR+
Sbjct: 393 AWGPLTYTVGRSAPSD---FPMAVFKSVNNPV-----TIKFTASAAQTAAA-TLRIGTTL 443
Query: 551 SANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTI 610
S Q +IN + P L R + R GL +++V +P +V+G NTI
Sbjct: 444 SFAGGRPQAKINSYTAAAPPAPKNLDSRG--VTRGAYRGLGEVYDVAIPAGTIVAGVNTI 501
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,427,161
Number of Sequences: 539616
Number of extensions: 13380416
Number of successful extensions: 24924
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 24885
Number of HSP's gapped (non-prelim): 42
length of query: 649
length of database: 191,569,459
effective HSP length: 124
effective length of query: 525
effective length of database: 124,657,075
effective search space: 65444964375
effective search space used: 65444964375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)