Query 042458
Match_columns 649
No_of_seqs 189 out of 299
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06045 Rhamnogal_lyase: Rham 100.0 4.6E-58 9.9E-63 451.0 20.6 200 1-203 4-203 (203)
2 PF09284 RhgB_N: Rhamnogalactu 100.0 7.4E-52 1.6E-56 412.7 22.2 241 6-327 1-245 (249)
3 PF14683 CBM-like: Polysacchar 100.0 4.3E-46 9.2E-51 361.0 10.7 165 442-631 1-167 (167)
4 PF14686 fn3_3: Polysaccharide 99.9 1.2E-21 2.5E-26 173.7 8.4 93 334-433 1-95 (95)
5 PF13620 CarboxypepD_reg: Carb 98.8 2.7E-08 5.8E-13 84.5 8.9 80 337-435 1-81 (82)
6 PF13715 DUF4480: Domain of un 98.5 1.7E-06 3.7E-11 74.6 10.6 88 337-449 1-88 (88)
7 cd03863 M14_CPD_II The second 97.9 4.4E-05 9.5E-10 83.7 9.8 79 335-436 296-374 (375)
8 cd03864 M14_CPN Peptidase M14 97.8 5.8E-05 1.3E-09 83.2 9.0 76 336-435 316-391 (392)
9 cd03865 M14_CPE_H Peptidase M1 97.7 9.7E-05 2.1E-09 81.6 8.6 77 334-435 325-401 (402)
10 cd06245 M14_CPD_III The third 97.6 0.00019 4.2E-09 78.4 9.5 76 335-435 286-361 (363)
11 cd03868 M14_CPD_I The first ca 97.5 0.00025 5.4E-09 77.7 8.3 77 335-434 295-371 (372)
12 cd03858 M14_CP_N-E_like Carbox 97.5 0.00038 8.3E-09 76.2 9.1 72 336-430 298-370 (374)
13 cd03867 M14_CPZ Peptidase M14- 97.1 0.0015 3.2E-08 72.4 8.9 72 336-430 318-391 (395)
14 cd03866 M14_CPM Peptidase M14 96.2 0.017 3.6E-07 63.7 8.7 70 335-425 294-363 (376)
15 PF08400 phage_tail_N: Prophag 95.5 0.076 1.7E-06 50.4 8.6 78 337-426 4-81 (134)
16 PRK15036 hydroxyisourate hydro 94.8 0.065 1.4E-06 51.1 6.2 66 334-410 25-94 (137)
17 PF08308 PEGA: PEGA domain; I 94.5 0.23 4.9E-06 41.2 8.2 45 389-437 25-69 (71)
18 cd00421 intradiol_dioxygenase 93.5 0.18 3.9E-06 48.3 6.4 63 335-403 11-80 (146)
19 PF03422 CBM_6: Carbohydrate b 93.2 0.7 1.5E-05 42.0 9.5 80 540-632 44-124 (125)
20 cd03869 M14_CPX_like Peptidase 92.8 0.26 5.6E-06 55.0 7.2 68 334-425 328-395 (405)
21 PF09430 DUF2012: Protein of u 92.2 0.66 1.4E-05 43.2 8.0 39 382-423 23-61 (123)
22 PF05738 Cna_B: Cna protein B- 92.1 0.57 1.2E-05 38.5 6.7 45 383-428 21-67 (70)
23 KOG1948 Metalloproteinase-rela 91.9 0.47 1E-05 56.4 8.0 55 336-409 316-371 (1165)
24 cd03463 3,4-PCD_alpha Protocat 91.7 0.38 8.2E-06 48.2 6.1 63 334-402 35-106 (185)
25 cd03459 3,4-PCD Protocatechuat 90.5 0.58 1.2E-05 45.7 6.0 63 335-403 15-87 (158)
26 PF07210 DUF1416: Protein of u 90.0 2.8 6E-05 36.8 9.0 61 334-411 6-66 (85)
27 COG3485 PcaH Protocatechuate 3 89.1 0.7 1.5E-05 47.7 5.6 65 334-404 71-144 (226)
28 TIGR02465 chlorocat_1_2 chloro 88.9 0.88 1.9E-05 47.6 6.2 64 334-403 97-165 (246)
29 TIGR02423 protocat_alph protoc 88.2 1 2.2E-05 45.5 6.0 64 334-403 38-111 (193)
30 cd03464 3,4-PCD_beta Protocate 87.8 1.1 2.3E-05 46.2 5.9 65 333-403 63-137 (220)
31 PF00775 Dioxygenase_C: Dioxyg 87.6 1.2 2.7E-05 44.4 6.2 63 335-403 29-98 (183)
32 PF03170 BcsB: Bacterial cellu 87.1 1.4 3.1E-05 51.4 7.2 78 526-617 29-111 (605)
33 PF07495 Y_Y_Y: Y_Y_Y domain; 86.8 0.72 1.6E-05 37.3 3.3 27 382-408 21-48 (66)
34 TIGR02422 protocat_beta protoc 86.1 1.8 3.8E-05 44.6 6.4 65 333-403 58-132 (220)
35 cd03458 Catechol_intradiol_dio 85.9 3 6.4E-05 43.9 8.1 64 334-403 103-171 (256)
36 cd03462 1,2-CCD chlorocatechol 85.4 1.4 3E-05 46.1 5.3 64 334-403 98-166 (247)
37 KOG1948 Metalloproteinase-rela 85.0 2.2 4.8E-05 51.1 7.2 58 336-409 119-176 (1165)
38 smart00606 CBD_IV Cellulose Bi 84.8 9.6 0.00021 34.9 10.2 89 526-631 39-129 (129)
39 cd03460 1,2-CTD Catechol 1,2 d 83.1 2.3 4.9E-05 45.4 5.8 65 333-403 122-191 (282)
40 TIGR02439 catechol_proteo cate 82.8 2.5 5.5E-05 45.1 6.1 64 334-403 127-195 (285)
41 PRK10340 ebgA cryptic beta-D-g 82.8 26 0.00057 43.9 15.7 42 4-46 715-756 (1021)
42 TIGR02438 catachol_actin catec 82.5 2.5 5.5E-05 45.0 5.9 64 334-403 131-199 (281)
43 cd03461 1,2-HQD Hydroxyquinol 81.1 3.2 7E-05 44.1 6.1 64 334-403 119-187 (277)
44 PF02837 Glyco_hydro_2_N: Glyc 79.5 4.6 9.9E-05 38.5 6.1 68 528-617 72-140 (167)
45 PRK11114 cellulose synthase re 78.5 3 6.5E-05 50.3 5.5 75 529-616 84-163 (756)
46 PF02929 Bgal_small_N: Beta ga 76.5 9.9 0.00022 40.2 8.2 30 16-46 1-30 (276)
47 PF13364 BetaGal_dom4_5: Beta- 76.1 9.2 0.0002 34.9 6.8 53 543-613 50-104 (111)
48 PF10670 DUF4198: Domain of un 75.2 7.9 0.00017 38.3 6.7 62 335-407 150-211 (215)
49 KOG2649 Zinc carboxypeptidase 73.2 11 0.00023 43.0 7.5 78 336-437 378-455 (500)
50 TIGR02962 hdxy_isourate hydrox 72.2 6.1 0.00013 36.5 4.6 50 353-408 13-67 (112)
51 PF00576 Transthyretin: HIUase 67.9 4.2 9.2E-05 37.6 2.6 51 353-408 13-68 (112)
52 KOG4342 Alpha-mannosidase [Car 67.2 9.9 0.00022 44.5 5.8 49 5-55 706-756 (1078)
53 PLN03059 beta-galactosidase; P 66.8 6 0.00013 48.0 4.2 85 526-617 621-715 (840)
54 cd05469 Transthyretin_like Tra 66.4 9.9 0.00021 35.3 4.7 51 353-408 13-67 (113)
55 PF03170 BcsB: Bacterial cellu 65.6 9.8 0.00021 44.5 5.6 78 525-615 323-408 (605)
56 PF14315 DUF4380: Domain of un 64.8 92 0.002 32.8 12.3 33 13-45 5-38 (274)
57 cd03457 intradiol_dioxygenase_ 62.5 20 0.00042 36.1 6.3 62 336-402 27-100 (188)
58 PF14900 DUF4493: Domain of un 61.0 1.6E+02 0.0034 30.2 12.9 54 379-435 47-106 (235)
59 cd05821 TLP_Transthyretin Tran 60.4 15 0.00032 34.6 4.7 63 335-407 6-72 (121)
60 cd05822 TLP_HIUase HIUase (5-h 59.7 16 0.00034 33.9 4.7 50 353-408 13-67 (112)
61 PF01060 DUF290: Transthyretin 57.2 23 0.00049 30.4 5.0 48 339-398 1-48 (80)
62 COG2351 Transthyretin-like pro 54.7 44 0.00096 31.4 6.6 65 336-415 9-78 (124)
63 PRK09525 lacZ beta-D-galactosi 52.7 22 0.00048 44.5 5.9 41 5-46 741-781 (1027)
64 PF02369 Big_1: Bacterial Ig-l 48.3 80 0.0017 28.1 7.3 64 336-409 25-90 (100)
65 PRK10340 ebgA cryptic beta-D-g 45.4 27 0.00059 43.7 5.1 67 528-616 113-179 (1021)
66 smart00095 TR_THY Transthyreti 44.1 35 0.00076 32.1 4.4 62 336-407 4-69 (121)
67 PF07748 Glyco_hydro_38C: Glyc 43.9 1.6E+02 0.0034 32.6 10.4 128 15-153 89-226 (457)
68 PF03944 Endotoxin_C: delta en 43.5 75 0.0016 30.2 6.7 95 529-632 41-140 (143)
69 PF13754 Big_3_4: Bacterial Ig 43.5 44 0.00095 26.6 4.3 30 379-408 2-33 (54)
70 PF08531 Bac_rhamnosid_N: Alph 42.7 18 0.0004 35.4 2.5 60 542-617 5-66 (172)
71 PF11008 DUF2846: Protein of u 40.8 35 0.00077 31.2 3.9 44 387-430 56-99 (117)
72 PF09912 DUF2141: Uncharacteri 39.7 63 0.0014 29.6 5.3 48 358-408 12-62 (112)
73 TIGR03000 plancto_dom_1 Planct 33.0 3.3E+02 0.0071 23.7 8.2 39 390-430 30-73 (75)
74 PF12866 DUF3823: Protein of u 32.4 2E+02 0.0043 29.8 8.2 89 335-435 21-111 (222)
75 PF14849 YidC_periplas: YidC p 31.8 46 0.00099 34.4 3.5 26 14-39 1-26 (270)
76 PF11797 DUF3324: Protein of u 29.8 61 0.0013 30.8 3.7 30 395-424 102-131 (140)
77 PF07550 DUF1533: Protein of u 29.3 44 0.00095 27.6 2.3 19 596-614 36-55 (65)
78 PF14200 RicinB_lectin_2: Rici 28.3 57 0.0012 28.7 3.0 37 355-399 35-72 (105)
79 PF01190 Pollen_Ole_e_I: Polle 27.3 70 0.0015 28.2 3.4 37 353-394 18-54 (97)
80 PRK09525 lacZ beta-D-galactosi 26.1 1.3E+02 0.0028 38.0 6.5 66 528-616 124-191 (1027)
81 PRK13211 N-acetylglucosamine-b 23.8 2E+02 0.0043 33.2 7.0 102 284-407 281-387 (478)
82 PRK10150 beta-D-glucuronidase; 21.7 1.8E+02 0.0038 34.2 6.3 65 529-615 70-135 (604)
83 KOG0496 Beta-galactosidase [Ca 20.9 2E+02 0.0043 34.4 6.2 71 524-617 556-626 (649)
No 1
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=100.00 E-value=4.6e-58 Score=451.02 Aligned_cols=200 Identities=72% Similarity=1.244 Sum_probs=195.0
Q ss_pred CCCCceEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEECCccchhhccccCCCcceeEEEecCCCCCCccceeeeeecce
Q 042458 1 MSPPAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTS 80 (649)
Q Consensus 1 ~~~~~v~l~~~g~~~vidNg~l~~tv~k~~G~itsi~y~G~enll~~~~~~~~~gY~d~~~~~~G~~~~~~~~~~~~gt~ 80 (649)
++.++|+|++++++|+||||+|+|||+||+|+||+|+|+|++||++..+++.++||||++|+.+|. .++|+++.||+
T Consensus 4 ~~~~~V~L~~~~~~VvldNGiVqVtls~p~G~VtgIkYnGi~NLle~~n~e~nrGYwD~~W~~~G~---~~~~~~~~gt~ 80 (203)
T PF06045_consen 4 SSSSGVTLTVQGRQVVLDNGIVQVTLSKPGGIVTGIKYNGIDNLLEVANKENNRGYWDLVWNEPGS---KGKFDRIKGTE 80 (203)
T ss_pred ccCCCeEEEEcCCEEEEECCEEEEEEcCCCceEEEEEECCEehhhcccCcccCCceEEEecccCCc---cccccccCCcE
Confidence 367899999999999999999999999999999999999999999999999999999999999885 56899999999
Q ss_pred EEEEEecCCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCceEEEEEEeeccccCCCCCCcceEEEEecCCCCcccce
Q 042458 81 FNVIVENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMA 160 (649)
Q Consensus 81 ~~v~~~~~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~ 160 (649)
|+||++++++|||||+++|+||++++.+||+||+||||++|+||||+|+|++|+++||+++|+|+|+||||++++|++||
T Consensus 81 f~Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~SGfY~YAI~e~~~~~Pa~~l~q~R~vfKl~~d~F~yma 160 (203)
T PF06045_consen 81 FSVIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSSGFYSYAIFEHPAGWPAFDLGQTRIVFKLNKDKFHYMA 160 (203)
T ss_pred EEEEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCceEEEEEEEecCCCCCCcccceeEEEEECCccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccCCCCCCCCCCCCCcccccceEEeecCCCCCCCceE
Q 042458 161 IADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEV 203 (649)
Q Consensus 161 ~~d~r~~~~P~~~d~~~~~g~~l~~~eav~l~~~~~~~~~G~~ 203 (649)
++|+||+.||+|+|+++++|++|+|||||+|++|.+|.++|||
T Consensus 161 i~d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev 203 (203)
T PF06045_consen 161 ISDDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV 203 (203)
T ss_pred ecccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence 9999999999999999999999999999999999999999986
No 2
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=7.4e-52 Score=412.75 Aligned_cols=241 Identities=20% Similarity=0.233 Sum_probs=157.1
Q ss_pred eEEEEeCcEEEEECC-eEEEEEeCCCeeEEEEEECCccchhhccccCCCcceeEEEecCCCCCCccceeeeeecceEEEE
Q 042458 6 VNLLIQDRHVVLDNG-ILEVTFSYPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSFNVI 84 (649)
Q Consensus 6 v~l~~~g~~~vidNg-~l~~tv~k~~G~itsi~y~G~enll~~~~~~~~~gY~d~~~~~~G~~~~~~~~~~~~gt~~~v~ 84 (649)
++++++|+++|||.| .|+|+|+|++|||+||+|||+| || +.+|.+|++ ||. |++.+.+
T Consensus 1 FG~t~sg~~~viDtga~Lvf~V~~s~gDitSi~y~g~E-lQ-~~~k~ShI~--------SGL-----------GsatVs~ 59 (249)
T PF09284_consen 1 FGYTDSGSNYVIDTGAGLVFKVSKSNGDITSIKYNGTE-LQ-YSSKNSHIN--------SGL-----------GSATVSI 59 (249)
T ss_dssp -EEEE-SSEEEEE---TEEEEEETTT--EEEEEETTEE--B--SSS-BEET--------T-------------SS-EEEE
T ss_pred CceEecCCcEEEECCCCEEEEEecCCCCeEEEEECCEe-ee-cCCccceec--------cCC-----------CccEEEE
Confidence 578999999999965 5999999999999999999996 99 899999999 873 5555566
Q ss_pred EecCCEEEEEEEEeecCCCCCCcccceeeEEEEEecCCceEEEEEEeeccccCCCCCCcceEEEEecCCCCcccceeecc
Q 042458 85 VENEDQVEISFTRTWDSSLEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADN 164 (649)
Q Consensus 85 ~~~~~~i~Vs~~~~~~~s~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~d~ 164 (649)
++..++|+|+|+.. +|+||||+|+|++.|||+++.+. +++|||||||+||++++||+-..
T Consensus 60 ~~~~~~IkVt~~~~------------tLthyyv~r~g~~~IYmaT~~~~-----e~~igelRfIaRL~~~~lpn~~~--- 119 (249)
T PF09284_consen 60 TTSGDYIKVTCKTG------------TLTHYYVARPGENNIYMATYITA-----EPSIGELRFIARLNRSILPNEYP--- 119 (249)
T ss_dssp EEETTEEEEEEE-S------------SEEEEEEEETT--EEEEEEEESS-------TTS-EEEEEEE-TTTS-EEET---
T ss_pred EeeCCEEEEEEEcC------------CeEEEEEEecCCceEEEEeccCC-----CCCccceEEEEEcccccCCCCCC---
Confidence 66667999999973 79999999999999999999876 55999999999999999998210
Q ss_pred ccccCCCCCCCCCCCCCcccccceEEeecCCCCCCCceEeeeeeccccccccceEEEEeCCCCeEEEEEcCCCCcccCCc
Q 042458 165 RQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDDKYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRTGGP 244 (649)
Q Consensus 165 r~~~~P~~~d~~~~~g~~l~~~eav~l~~~~~~~~~G~~~sKY~~s~~~~D~~vhG~~s~g~~vG~W~I~~s~E~~sGGP 244 (649)
+-...+. .|. .|++..|++. .-+|+++||||++.++||+++|||+ |+++|+|||++++|.+||||
T Consensus 120 ----~~~~~~~---~g~-----taIEgsDVf~-~~~G~TrSKfYSs~r~IDd~~hgv~--g~~vgv~mi~~~~E~SSGGP 184 (249)
T PF09284_consen 120 ----YGDVSTT---DGG-----TAIEGSDVFL-VSDGQTRSKFYSSQRFIDDDVHGVS--GSAVGVYMIMSNYEKSSGGP 184 (249)
T ss_dssp ----TGGGG-----TT------EEEETTTEEE-E-TTEEEEGGGG--BGGG-SEEEEE---SS-EEEEE----TT-SS-T
T ss_pred ----ccccccc---CCc-----eEEeeccEEE-ecCceEeeeeccccceeccceEEEe--cCCeEEEEEeCCccccCCCC
Confidence 0001111 232 3344444431 1289999999999999999999998 88899999999999999999
Q ss_pred ceecccccCCCc---EEEEEeeccccCCCccccccCCCCcceeeeeEEEEEcCCCCCCCCcccHHHHHHhhhhhccCCCC
Q 042458 245 QKQNLTSHVGPT---TLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPY 321 (649)
Q Consensus 245 ~kqdL~~h~g~~---~l~y~~s~H~~g~~~~~~~~~Ge~w~kv~GP~~~y~N~g~~~~~~~~l~~DA~~~~~~E~~~wpy 321 (649)
|+|||++|.++. ||+||+|+|.++|++ |.| +||||+|+|++|++|+. .+.++
T Consensus 185 FfRDI~~~~~~~~~~Ly~ymnSgH~qTE~~----R~G-----LhGPYaL~FT~g~~Ps~----------------~~~D~ 239 (249)
T PF09284_consen 185 FFRDINTNNGGDGNELYNYMNSGHTQTEPY----RMG-----LHGPYALAFTDGGAPSA----------------SDLDT 239 (249)
T ss_dssp T-B---EEE-SS-EEEEEEEE-STT--S--------E-----EEEEEEEEEESS----S---------------------
T ss_pred chhhhhhccCCccceeeeeEecCcccCchh----ccc-----cCCceEEEEcCCCCCCC----------------ccccc
Confidence 999999998764 999999999999974 485 99999999999999853 23579
Q ss_pred CCCCCC
Q 042458 322 SFPASD 327 (649)
Q Consensus 322 sf~~s~ 327 (649)
+||++-
T Consensus 240 sff~~L 245 (249)
T PF09284_consen 240 SFFDDL 245 (249)
T ss_dssp GGGGGT
T ss_pred cchhhc
Confidence 999863
No 3
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=100.00 E-value=4.3e-46 Score=360.98 Aligned_cols=165 Identities=50% Similarity=0.862 Sum_probs=115.7
Q ss_pred CceeEEeccCCCccceecCCCCccccccccccCCchhhcchhhhhhcccCCCCCeEEEecccCCCCCeeeEEEeeeCCCC
Q 042458 442 PTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDQPDRFRQYGLWERYAELYPDGDLVYTVGSSDYTKDWFFVQVTRKKDNN 521 (649)
Q Consensus 442 ~~LWeIGi~Drta~eF~~~d~~~~~~n~~~~~hp~~~R~yglW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~ 521 (649)
++|||||+|||+|.||+++| |+++|||+ |++|+++||++|++|+||+| +++||||||+++
T Consensus 1 ~~iW~IG~~Drta~eF~~~~-------------~~~~r~~~-~~d~~~~~p~~~~~ytVG~S-~~~Dw~y~~~~~----- 60 (167)
T PF14683_consen 1 PTIWQIGTPDRTAAEFRNGD-------------PDKYRQYG-WSDYSRDFPWEDLTYTVGSS-PAKDWPYAQWGR----- 60 (167)
T ss_dssp SEEEEEE-SSSS-TTSBTHH--------------HHTTS---TT--TTS----S-EEETTTS--GGGSBSEEETT-----
T ss_pred CcceEeCCCCCCchhhccCC-------------hhhhhhcC-cccchhhCCCCCCEEEEccC-cccCCcEEEEec-----
Confidence 58999999999999999874 25699998 99999999998999999999 888999999987
Q ss_pred CCCCceEEEEEEecCCCCCccEEEEEEeecc-CCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEE-eeeEEEEEEee
Q 042458 522 TYQGSTWQIKFELDDVNQSSTYKLRVAIASA-NLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIH-GLYWLFNVDVP 599 (649)
Q Consensus 522 ~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~-G~~~~~~~~ip 599 (649)
.+++|+|+|+|++++..+.+||||+||+| ++++++|+|||+.... ....+++|++++|+|+| |+|++++|+||
T Consensus 61 --~~~~w~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg~~~~~---~~~~~~~d~~~~r~g~~~G~~~~~~~~ip 135 (167)
T PF14683_consen 61 --VNGTWTIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNGWSGPF---PSAPFGNDNAIYRSGIHRGNYRLYEFDIP 135 (167)
T ss_dssp --TS--EEEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETTEE--------------S--GGGT---S---EEEEEE-
T ss_pred --cCCCEEEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcCccCCc---cccccCCCCceeeCceecccEEEEEEEEc
Confidence 35999999999999976799999999999 8999999999965542 23467899999999988 99999999999
Q ss_pred CCceeeeccEEEEEeecCCCCCceEEEEEEEE
Q 042458 600 GARLVSGDNTIFFIQPRSTSPFQGIMYDYIRF 631 (649)
Q Consensus 600 a~~L~~G~NtI~l~~~~gss~f~~vmyD~IrL 631 (649)
+++|++|+|+|+|++++|++.+.|||||||||
T Consensus 136 a~~L~~G~Nti~lt~~~gs~~~~gvmyD~I~L 167 (167)
T PF14683_consen 136 ASLLKAGENTITLTVPSGSGLSPGVMYDYIRL 167 (167)
T ss_dssp TTSS-SEEEEEEEEEE-S-GGSSEEEEEEEEE
T ss_pred HHHEEeccEEEEEEEccCCCccCeEEEEEEEC
Confidence 99999999999999999987788999999998
No 4
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=99.85 E-value=1.2e-21 Score=173.67 Aligned_cols=93 Identities=49% Similarity=0.904 Sum_probs=54.2
Q ss_pred CCeEEEEEEEeeccccccccccC-CccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceee
Q 042458 334 QRGNVSGRLLVQDEYISDDYISA-SGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIG 412 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa-~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G 412 (649)
+||+|+|+|+++|++. ..++ ..++|+|+.+++ ++ ++++||||+++|++|+|+|+|||||+|+|++|++|++|
T Consensus 1 ~RG~VsG~l~l~dg~~---~~~~~~~~~Vgl~~~~d---~~-q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g~~g 73 (95)
T PF14686_consen 1 QRGSVSGRLTLSDGVT---NPPAGANAVVGLAPPGD---FQ-QNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADGIFG 73 (95)
T ss_dssp G-BEEEEEEE---SS-----TT--S-EEEEEE------------SS-EEEEE--TTSEEE---B-SEEEEEEEEE----T
T ss_pred CCCEEEEEEEEccCcc---cCccceeEEEEeeeccc---cc-cCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEecccC
Confidence 5999999999999854 1334 678999998887 44 59999999999999999999999999999999999999
Q ss_pred eeee-eeEEEEcCCceeeccce
Q 042458 413 DYRY-DVVVNITPGFDIDMGDL 433 (649)
Q Consensus 413 ~~~~-~~~VtV~aG~t~~l~~l 433 (649)
++.. +.+|+|++|++++|++|
T Consensus 74 ~~~~~~~~ItV~~g~~~~lg~~ 95 (95)
T PF14686_consen 74 DYKVASDSITVSGGTTTDLGDL 95 (95)
T ss_dssp TEEEEEEEEEE-T-EEE-----
T ss_pred ceEEecceEEEcCCcEeccccC
Confidence 9986 78899999999988754
No 5
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=98.79 E-value=2.7e-08 Score=84.47 Aligned_cols=80 Identities=26% Similarity=0.408 Sum_probs=59.6
Q ss_pred EEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeeeee
Q 042458 337 NVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRY 416 (649)
Q Consensus 337 tVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 416 (649)
+|+|+|...++ .|..+|.|.|..... +..+-+.||++|+|.|++++||+|+|.+...|+. ..
T Consensus 1 tI~G~V~d~~g------~pv~~a~V~l~~~~~---------~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~---~~ 62 (82)
T PF13620_consen 1 TISGTVTDATG------QPVPGATVTLTDQDG---------GTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQ---PQ 62 (82)
T ss_dssp -EEEEEEETTS------CBHTT-EEEET--TT---------TECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE----E
T ss_pred CEEEEEEcCCC------CCcCCEEEEEEEeeC---------CCEEEEEECCCceEEEEccCCEeEEEEEEECCcc---eE
Confidence 68999998877 899999999975432 4567899999999999999999999999999865 33
Q ss_pred ee-EEEEcCCceeeccceEE
Q 042458 417 DV-VVNITPGFDIDMGDLVY 435 (649)
Q Consensus 417 ~~-~VtV~aG~t~~l~~l~~ 435 (649)
.. .|+|.+|++..+ +|++
T Consensus 63 ~~~~v~v~~~~~~~~-~i~L 81 (82)
T PF13620_consen 63 TQENVTVTAGQTTTV-DITL 81 (82)
T ss_dssp EEEEEEESSSSEEE---EEE
T ss_pred EEEEEEEeCCCEEEE-EEEE
Confidence 33 599999999887 5776
No 6
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=98.45 E-value=1.7e-06 Score=74.63 Aligned_cols=88 Identities=26% Similarity=0.382 Sum_probs=68.4
Q ss_pred EEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeeeee
Q 042458 337 NVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRY 416 (649)
Q Consensus 337 tVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 416 (649)
+|+|+|...+ .+.|..+|.|.+.... ..+.||++|.|+|+ +++|+|+|.+...|+. ..
T Consensus 1 ti~G~V~d~~-----t~~pl~~a~V~~~~~~-------------~~~~Td~~G~F~i~-~~~g~~~l~is~~Gy~---~~ 58 (88)
T PF13715_consen 1 TISGKVVDSD-----TGEPLPGATVYLKNTK-------------KGTVTDENGRFSIK-LPEGDYTLKISYIGYE---TK 58 (88)
T ss_pred CEEEEEEECC-----CCCCccCeEEEEeCCc-------------ceEEECCCeEEEEE-EcCCCeEEEEEEeCEE---EE
Confidence 5899999876 2389999999997443 37889999999999 9999999999999765 55
Q ss_pred eeEEEEcCCceeeccceEEeCCCCCCceeEEec
Q 042458 417 DVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGI 449 (649)
Q Consensus 417 ~~~VtV~aG~t~~l~~l~~~~~~~g~~LWeIGi 449 (649)
...|.+..++...+ .+.+++. ..+|-||.+
T Consensus 59 ~~~i~~~~~~~~~~-~i~L~~~--~~~L~eVvV 88 (88)
T PF13715_consen 59 TITISVNSNKNTNL-NIYLEPK--SNQLDEVVV 88 (88)
T ss_pred EEEEEecCCCEEEE-EEEEeeC--cccCCeEEC
Confidence 55677776665556 4777553 667887753
No 7
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=97.90 E-value=4.4e-05 Score=83.70 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=63.9
Q ss_pred CeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeee
Q 042458 335 RGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDY 414 (649)
Q Consensus 335 RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 414 (649)
...|+|+|.... .+.|..+|.|.+.... ..+.||.+|.|.+ .|+||+|+|+|+..|+.
T Consensus 296 ~~gI~G~V~D~~-----~g~pl~~AtV~V~g~~-------------~~~~Td~~G~f~~-~l~pG~ytl~vs~~GY~--- 353 (375)
T cd03863 296 HRGVRGFVLDAT-----DGRGILNATISVADIN-------------HPVTTYKDGDYWR-LLVPGTYKVTASARGYD--- 353 (375)
T ss_pred cCeEEEEEEeCC-----CCCCCCCeEEEEecCc-------------CceEECCCccEEE-ccCCeeEEEEEEEcCcc---
Confidence 579999998752 1378899999997433 2678999999999 69999999999999875
Q ss_pred eeeeEEEEcCCceeeccceEEe
Q 042458 415 RYDVVVNITPGFDIDMGDLVYE 436 (649)
Q Consensus 415 ~~~~~VtV~aG~t~~l~~l~~~ 436 (649)
..+.+|+|.+|+++.+ ++.++
T Consensus 354 ~~~~~v~V~~~~~~~~-~~~L~ 374 (375)
T cd03863 354 PVTKTVEVDSKGAVQV-NFTLS 374 (375)
T ss_pred cEEEEEEEcCCCcEEE-EEEec
Confidence 4556799999999887 47663
No 8
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=97.82 E-value=5.8e-05 Score=83.17 Aligned_cols=76 Identities=14% Similarity=0.244 Sum_probs=63.0
Q ss_pred eEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeeee
Q 042458 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYR 415 (649)
Q Consensus 336 GtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~ 415 (649)
..|+|+|+..++ .|..+|.|.+.... .-+.||.+|.| +.+++||+|+|.++..|+. .
T Consensus 316 ~gI~G~V~D~~g------~pi~~A~V~v~g~~-------------~~~~T~~~G~y-~r~l~pG~Y~l~vs~~Gy~---~ 372 (392)
T cd03864 316 QGIKGMVTDENN------NGIANAVISVSGIS-------------HDVTSGTLGDY-FRLLLPGTYTVTASAPGYQ---P 372 (392)
T ss_pred CeEEEEEECCCC------CccCCeEEEEECCc-------------cceEECCCCcE-EecCCCeeEEEEEEEcCce---e
Confidence 489999998766 89999999997432 36789999999 9999999999999999876 5
Q ss_pred eeeEEEEcCCceeeccceEE
Q 042458 416 YDVVVNITPGFDIDMGDLVY 435 (649)
Q Consensus 416 ~~~~VtV~aG~t~~l~~l~~ 435 (649)
.+.+|+|.+++++++ ++++
T Consensus 373 ~t~~v~V~~~~~~~~-df~L 391 (392)
T cd03864 373 STVTVTVGPAEATLV-NFQL 391 (392)
T ss_pred EEEEEEEcCCCcEEE-eeEe
Confidence 666799999987766 4654
No 9
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=97.71 E-value=9.7e-05 Score=81.56 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=63.1
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeee
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGD 413 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~ 413 (649)
.|| |+|+|+...+ .|..+|.|.+.... ..+.||.+|.|.+ .++||+|+|+|.+.|+.
T Consensus 325 ~~g-I~G~V~D~~g------~pI~~AtV~V~g~~-------------~~~~T~~~G~Y~~-~L~pG~Ytv~vsa~Gy~-- 381 (402)
T cd03865 325 HRG-VKGFVKDLQG------NPIANATISVEGID-------------HDITSAKDGDYWR-LLAPGNYKLTASAPGYL-- 381 (402)
T ss_pred ccc-eEEEEECCCC------CcCCCeEEEEEcCc-------------cccEECCCeeEEE-CCCCEEEEEEEEecCcc--
Confidence 467 9999987655 78899999997433 2567999999998 89999999999999876
Q ss_pred eeeeeEEEEcCCceeeccceEE
Q 042458 414 YRYDVVVNITPGFDIDMGDLVY 435 (649)
Q Consensus 414 ~~~~~~VtV~aG~t~~l~~l~~ 435 (649)
.....|+|.+++++.+ ++++
T Consensus 382 -~~~~~V~V~~~~~~~v-df~L 401 (402)
T cd03865 382 -AVVKKVAVPYSPAVRV-DFEL 401 (402)
T ss_pred -cEEEEEEEcCCCcEEE-eEEe
Confidence 4557799999998877 4665
No 10
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=97.64 E-value=0.00019 Score=78.42 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=62.9
Q ss_pred CeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeee
Q 042458 335 RGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDY 414 (649)
Q Consensus 335 RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 414 (649)
.-.|+|+|+..++ .|..+|.|.+... . .+.||.+|.|.+. ++||+|+|.+...|+.
T Consensus 286 ~~gI~G~V~d~~g------~pi~~A~V~v~g~-------------~-~~~T~~~G~y~~~-L~pG~y~v~vs~~Gy~--- 341 (363)
T cd06245 286 HKGVHGVVTDKAG------KPISGATIVLNGG-------------H-RVYTKEGGYFHVL-LAPGQHNINVIAEGYQ--- 341 (363)
T ss_pred CcEEEEEEEcCCC------CCccceEEEEeCC-------------C-ceEeCCCcEEEEe-cCCceEEEEEEEeCce---
Confidence 3579999998765 8999999999632 1 5679999999997 9999999999999775
Q ss_pred eeeeEEEEcCCceeeccceEE
Q 042458 415 RYDVVVNITPGFDIDMGDLVY 435 (649)
Q Consensus 415 ~~~~~VtV~aG~t~~l~~l~~ 435 (649)
....+|+|.+++++.+ ++++
T Consensus 342 ~~~~~V~v~~~~~~~~-~f~L 361 (363)
T cd06245 342 QEHLPVVVSHDEASSV-KIVL 361 (363)
T ss_pred eEEEEEEEcCCCeEEE-EEEe
Confidence 5666799999988777 4776
No 11
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=97.51 E-value=0.00025 Score=77.72 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=60.7
Q ss_pred CeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeee
Q 042458 335 RGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDY 414 (649)
Q Consensus 335 RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 414 (649)
.+.|+|+|+..++ .|..+|.|.+.+.. ..+.||++|.|.+ +++||+|+|.+...|+.-
T Consensus 295 ~~~i~G~V~d~~g------~pv~~A~V~v~~~~-------------~~~~td~~G~y~~-~l~~G~Y~l~vs~~Gf~~-- 352 (372)
T cd03868 295 HIGVKGFVRDASG------NPIEDATIMVAGID-------------HNVTTAKFGDYWR-LLLPGTYTITAVAPGYEP-- 352 (372)
T ss_pred CCceEEEEEcCCC------CcCCCcEEEEEecc-------------cceEeCCCceEEe-cCCCEEEEEEEEecCCCc--
Confidence 4789999988765 89999999997433 3689999999985 799999999999998751
Q ss_pred eeeeEEEEcCCceeeccceE
Q 042458 415 RYDVVVNITPGFDIDMGDLV 434 (649)
Q Consensus 415 ~~~~~VtV~aG~t~~l~~l~ 434 (649)
.....|+|.+|+++.+ +++
T Consensus 353 ~~~~~v~v~~g~~~~~-~~~ 371 (372)
T cd03868 353 STVTDVVVKEGEATSV-NFT 371 (372)
T ss_pred eEEeeEEEcCCCeEEE-eeE
Confidence 1223477999998777 354
No 12
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=97.47 E-value=0.00038 Score=76.20 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=59.4
Q ss_pred eEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeeee
Q 042458 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYR 415 (649)
Q Consensus 336 GtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~ 415 (649)
.+|+|+|+..++ .|..+|.|.+. +....+.||.+|.|.+. ++||+|+|.+...|+. .
T Consensus 298 ~~i~G~V~d~~g------~pl~~A~V~i~-------------~~~~~~~Td~~G~f~~~-l~~G~y~l~vs~~Gy~---~ 354 (374)
T cd03858 298 RGIKGFVRDANG------NPIANATISVE-------------GINHDVTTAEDGDYWRL-LLPGTYNVTASAPGYE---P 354 (374)
T ss_pred CceEEEEECCCC------CccCCeEEEEe-------------cceeeeEECCCceEEEe-cCCEeEEEEEEEcCcc---e
Confidence 489999988765 78899999995 45568999999999986 8999999999999765 4
Q ss_pred eeeEEEEcC-Cceeec
Q 042458 416 YDVVVNITP-GFDIDM 430 (649)
Q Consensus 416 ~~~~VtV~a-G~t~~l 430 (649)
++.+|.|.. |+++.+
T Consensus 355 ~~~~v~v~~~g~~~~~ 370 (374)
T cd03858 355 QTKSVVVPNDNSAVVV 370 (374)
T ss_pred EEEEEEEecCCceEEE
Confidence 555677877 887766
No 13
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=97.13 E-value=0.0015 Score=72.35 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=57.3
Q ss_pred eEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeeee
Q 042458 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYR 415 (649)
Q Consensus 336 GtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~ 415 (649)
-.|+|+|+..++ .|..+|.|.+.. ....+.||++|.|. .+++||+|+|.+...|+. .
T Consensus 318 ~~i~G~V~D~~g------~pi~~A~V~v~g-------------~~~~~~Td~~G~y~-~~l~~G~y~l~vs~~Gy~---~ 374 (395)
T cd03867 318 RGIKGFVKDKDG------NPIKGARISVRG-------------IRHDITTAEDGDYW-RLLPPGIHIVSAQAPGYT---K 374 (395)
T ss_pred ceeEEEEEcCCC------CccCCeEEEEec-------------cccceEECCCceEE-EecCCCcEEEEEEecCee---e
Confidence 369999998765 899999999973 34478899999997 589999999999999875 5
Q ss_pred eeeEEEEcC--Cceeec
Q 042458 416 YDVVVNITP--GFDIDM 430 (649)
Q Consensus 416 ~~~~VtV~a--G~t~~l 430 (649)
...+|+|.+ ++...+
T Consensus 375 ~~~~v~v~~~~~~~~~~ 391 (395)
T cd03867 375 VMKRVTLPARMKRAGRV 391 (395)
T ss_pred EEEEEEeCCcCCCceEe
Confidence 556688865 444444
No 14
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.19 E-value=0.017 Score=63.69 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=53.9
Q ss_pred CeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeee
Q 042458 335 RGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDY 414 (649)
Q Consensus 335 RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~ 414 (649)
.+.|+|+|+...+ .|..+|.|.+...+ ...-+.||++|.|.+. ++||+|+|.+.+.|+.
T Consensus 294 ~~gI~G~V~D~~g------~pi~~A~V~v~g~~-----------~~~~~~T~~~G~y~~~-l~pG~Y~v~vsa~Gy~--- 352 (376)
T cd03866 294 HLGVKGQVFDSNG------NPIPNAIVEVKGRK-----------HICPYRTNVNGEYFLL-LLPGKYMINVTAPGFK--- 352 (376)
T ss_pred cCceEEEEECCCC------CccCCeEEEEEcCC-----------ceeEEEECCCceEEEe-cCCeeEEEEEEeCCcc---
Confidence 5679999987655 78999999996432 1123469999999775 9999999999999875
Q ss_pred eeeeEEEEcCC
Q 042458 415 RYDVVVNITPG 425 (649)
Q Consensus 415 ~~~~~VtV~aG 425 (649)
....+|.|.+.
T Consensus 353 ~~~~~v~v~~~ 363 (376)
T cd03866 353 TVITNVIIPYN 363 (376)
T ss_pred eEEEEEEeCCC
Confidence 45566888754
No 15
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=95.45 E-value=0.076 Score=50.37 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=55.6
Q ss_pred EEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeeeee
Q 042458 337 NVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRY 416 (649)
Q Consensus 337 tVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~ 416 (649)
.|||.++...| +|..++.+.|+.-..- .+==.+.-=+..|++.|+|+|. +.||.|.++++..|.. ..+
T Consensus 4 ~ISGvL~dg~G------~pv~g~~I~L~A~~tS---~~Vv~~t~as~~t~~~G~Ys~~-~epG~Y~V~l~~~g~~--~~~ 71 (134)
T PF08400_consen 4 KISGVLKDGAG------KPVPGCTITLKARRTS---STVVVGTVASVVTGEAGEYSFD-VEPGVYRVTLKVEGRP--PVY 71 (134)
T ss_pred EEEEEEeCCCC------CcCCCCEEEEEEccCc---hheEEEEEEEEEcCCCceEEEE-ecCCeEEEEEEECCCC--cee
Confidence 68999987776 9999999999743210 0000123337789999999995 9999999999999854 233
Q ss_pred eeEEEEcCCc
Q 042458 417 DVVVNITPGF 426 (649)
Q Consensus 417 ~~~VtV~aG~ 426 (649)
-..|+|.+.+
T Consensus 72 vG~I~V~~dS 81 (134)
T PF08400_consen 72 VGDITVYEDS 81 (134)
T ss_pred EEEEEEecCC
Confidence 3568887544
No 16
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=94.81 E-value=0.065 Score=51.07 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=49.0
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEe---Cc-ccCCceEEEEEECc
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSI---TA-VRAGDYNLYAWVPG 409 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI---~n-VrpGtY~L~a~~~G 409 (649)
+.+.|+++|+... .++||.++.|-|..... +.|+ .-.-+.||++|+|.. .+ +.||.|+|.....+
T Consensus 25 ~~~~Is~HVLDt~-----~G~PA~gV~V~L~~~~~-~~w~-----~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~ 93 (137)
T PRK15036 25 QQNILSVHILNQQ-----TGKPAADVTVTLEKKAD-NGWL-----QLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGD 93 (137)
T ss_pred cCCCeEEEEEeCC-----CCcCCCCCEEEEEEccC-CceE-----EEEEEEECCCCCCccccCcccCCCeeEEEEEEcch
Confidence 4467999988764 35999999999975432 2342 235578999999986 34 88999999998764
Q ss_pred e
Q 042458 410 F 410 (649)
Q Consensus 410 ~ 410 (649)
+
T Consensus 94 Y 94 (137)
T PRK15036 94 Y 94 (137)
T ss_pred h
Confidence 3
No 17
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=94.53 E-value=0.23 Score=41.22 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=36.8
Q ss_pred cceEeCcccCCceEEEEEECceeeeeeeeeEEEEcCCceeeccceEEeC
Q 042458 389 GYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDMGDLVYEP 437 (649)
Q Consensus 389 G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~ 437 (649)
...++..+++|.|+|.+..+|+. ..+..|.|.+|++..+ .+.+++
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~---~~~~~v~v~~~~~~~v-~~~L~~ 69 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYE---PYTKTVTVKPGETTTV-NVTLEP 69 (71)
T ss_pred CcceeeecCCccEEEEEEECCCe---eEEEEEEECCCCEEEE-EEEEEE
Confidence 34578889999999999999765 5667799999999888 477754
No 18
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=93.49 E-value=0.18 Score=48.33 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=47.7
Q ss_pred CeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccc-------cceeEEEeCCCcceEeCcccCCceEE
Q 042458 335 RGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECK-------DYQFWTSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 335 RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~-------~yqYwt~td~~G~FtI~nVrpGtY~L 403 (649)
.=.|.|+|+..++ .|..+|.|-++.....|....+.. ..--...||++|.|.|.-|+||.|.+
T Consensus 11 ~l~l~G~V~D~~g------~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~ 80 (146)
T cd00421 11 PLTLTGTVLDGDG------CPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPI 80 (146)
T ss_pred EEEEEEEEECCCC------CCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCC
Confidence 4589999998877 788889999977666553332211 22234789999999999999999994
No 19
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=93.17 E-value=0.7 Score=42.04 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=49.5
Q ss_pred CccEEEEEEeeccCC-ceeEEEEcCCCCCCCCccccccCCCCeeeeeeEEeeeEEEEEEeeCCceeeeccEEEEEeecCC
Q 042458 540 SSTYKLRVAIASANL-SELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDNTIFFIQPRST 618 (649)
Q Consensus 540 ~~~~tLriala~a~~-~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gs 618 (649)
.+.|+|++..|.... ++++|+||+.... ...+..++. .+-.-.|...+..| .|.+|.|+|+|....+.
T Consensus 44 ~g~y~~~~~~a~~~~~~~~~l~id~~~g~--~~~~~~~~~------tg~w~~~~~~~~~v---~l~~G~h~i~l~~~~~~ 112 (125)
T PF03422_consen 44 AGTYTLTIRYANGGGGGTIELRIDGPDGT--LIGTVSLPP------TGGWDTWQTVSVSV---KLPAGKHTIYLVFNGGD 112 (125)
T ss_dssp SEEEEEEEEEEESSSSEEEEEEETTTTSE--EEEEEEEE-------ESSTTEEEEEEEEE---EEESEEEEEEEEESSSS
T ss_pred CceEEEEEEEECCCCCcEEEEEECCCCCc--EEEEEEEcC------CCCccccEEEEEEE---eeCCCeeEEEEEEECCC
Confidence 578889888888644 7999999993321 112222211 11011234444444 45679999999987764
Q ss_pred CCCceEEEEEEEEe
Q 042458 619 SPFQGIMYDYIRFE 632 (649)
Q Consensus 619 s~f~~vmyD~IrLe 632 (649)
+ ..+-.|+|+|+
T Consensus 113 ~--~~~niD~~~f~ 124 (125)
T PF03422_consen 113 G--WAFNIDYFQFT 124 (125)
T ss_dssp S--B-EEEEEEEEE
T ss_pred C--ceEEeEEEEEE
Confidence 3 35889999886
No 20
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=92.83 E-value=0.26 Score=54.96 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=50.8
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeee
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGD 413 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~ 413 (649)
.|| |+|.|+...+ .|..+|.|.+..-. ....|.++|.|-- =+.||+|+++|.++|+.
T Consensus 328 h~G-ikG~V~d~~g------~~i~~a~i~v~g~~-------------~~v~t~~~GdywR-ll~pG~y~v~~~a~gy~-- 384 (405)
T cd03869 328 HRG-IKGVVRDKTG------KGIPNAIISVEGIN-------------HDIRTASDGDYWR-LLNPGEYRVTAHAEGYT-- 384 (405)
T ss_pred hcC-ceEEEECCCC------CcCCCcEEEEecCc-------------cceeeCCCCceEE-ecCCceEEEEEEecCCC--
Confidence 354 8999987765 78889999887433 2456778897754 38999999999999764
Q ss_pred eeeeeEEEEcCC
Q 042458 414 YRYDVVVNITPG 425 (649)
Q Consensus 414 ~~~~~~VtV~aG 425 (649)
....+|+|..+
T Consensus 385 -~~~~~~~v~~~ 395 (405)
T cd03869 385 -SSTKNCEVGYE 395 (405)
T ss_pred -cccEEEEEcCC
Confidence 45566788754
No 21
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=92.20 E-value=0.66 Score=43.18 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=31.4
Q ss_pred EEEeCCCcceEeCcccCCceEEEEEECceeeeeeeeeEEEEc
Q 042458 382 WTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNIT 423 (649)
Q Consensus 382 wt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~ 423 (649)
-+...++|+|.|.||++|+|.|.+-...+. |. .-.|.|.
T Consensus 23 ~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~--F~-~~RVdV~ 61 (123)
T PF09430_consen 23 SAFVRSDGSFVFHNVPPGSYLLEVHSPDYV--FP-PYRVDVS 61 (123)
T ss_pred EEEecCCCEEEeCCCCCceEEEEEECCCcc--cc-CEEEEEe
Confidence 678899999999999999999999987643 22 2347777
No 22
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=92.06 E-value=0.57 Score=38.45 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=31.9
Q ss_pred EEeCCCcceEeCcccCCceEEEEEE--CceeeeeeeeeEEEEcCCcee
Q 042458 383 TSADEDGYFSITAVRAGDYNLYAWV--PGFIGDYRYDVVVNITPGFDI 428 (649)
Q Consensus 383 t~td~~G~FtI~nVrpGtY~L~a~~--~G~~G~~~~~~~VtV~aG~t~ 428 (649)
..+|++|.|.|++++||+|.|.--. .|+.- -.....++|..++..
T Consensus 21 ~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~~-~~~~~~~~i~~~~~~ 67 (70)
T PF05738_consen 21 VTTDENGKYTFKNLPPGTYTLKETKAPDGYQL-DDTPYEFTITEDGDV 67 (70)
T ss_dssp EEGGTTSEEEEEEEESEEEEEEEEETTTTEEE-EECEEEEEECTTSCE
T ss_pred EEECCCCEEEEeecCCeEEEEEEEECCCCCEE-CCCceEEEEecCCEE
Confidence 5689999999999999999999887 44321 112234667666553
No 23
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.47 Score=56.41 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=44.6
Q ss_pred eEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCc-ccCCceEEEEEECc
Q 042458 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITA-VRAGDYNLYAWVPG 409 (649)
Q Consensus 336 GtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~n-VrpGtY~L~a~~~G 409 (649)
-+|+|||++.. ...|.+++.|.+. -+-..+||++|+|++.| +..|+|++.|-+..
T Consensus 316 fSvtGRVl~g~-----~g~~l~gvvvlvn--------------gk~~~kTdaqGyykLen~~t~gtytI~a~keh 371 (1165)
T KOG1948|consen 316 FSVTGRVLVGS-----KGLPLSGVVVLVN--------------GKSGGKTDAQGYYKLENLKTDGTYTITAKKEH 371 (1165)
T ss_pred EEeeeeEEeCC-----CCCCccceEEEEc--------------CcccceEcccceEEeeeeeccCcEEEEEeccc
Confidence 48899987762 2378889988884 33367899999999999 99999999998764
No 24
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=91.68 E-value=0.38 Score=48.18 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=49.0
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCccccc-------ccceeE--EEeCCCcceEeCcccCCceE
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQREC-------KDYQFW--TSADEDGYFSITAVRAGDYN 402 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~-------~~yqYw--t~td~~G~FtI~nVrpGtY~ 402 (649)
..=.|+|+|...++ +|..+|.|=++.....|....+. ..++.| ..||++|+|++.-|+||-|.
T Consensus 35 ~~l~l~G~V~D~~g------~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~ 106 (185)
T cd03463 35 ERITLEGRVYDGDG------APVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVP 106 (185)
T ss_pred CEEEEEEEEECCCC------CCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcC
Confidence 45689999997765 89999999998877777443321 344455 56899999999999999986
No 25
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=90.53 E-value=0.58 Score=45.69 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=48.8
Q ss_pred CeEEEEEEEeeccccccccccCCccEEEecCCCCCCCccccc--------ccceeE--EEeCCCcceEeCcccCCceEE
Q 042458 335 RGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQREC--------KDYQFW--TSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 335 RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~--------~~yqYw--t~td~~G~FtI~nVrpGtY~L 403 (649)
+=.|+|+|...++ .|..+|.|=++.....|....+. .++..| ..||++|.|+|.-|+||-|.+
T Consensus 15 ~l~l~g~V~D~~g------~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~ 87 (158)
T cd03459 15 RIILEGRVLDGDG------RPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPW 87 (158)
T ss_pred EEEEEEEEECCCC------CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCC
Confidence 4578999987665 89999999998877777443322 345545 468999999999999999984
No 26
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=90.04 E-value=2.8 Score=36.78 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=46.9
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECcee
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFI 411 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~ 411 (649)
..-.|+|+|+ .++ .|..+++|-|-+... .| -=-..++++|.|.+- ..||+.+|.+-..+-.
T Consensus 6 ke~VItG~V~-~~G------~Pv~gAyVRLLD~sg--EF-------taEvvts~~G~FRFf-aapG~WtvRal~~~g~ 66 (85)
T PF07210_consen 6 KETVITGRVT-RDG------EPVGGAYVRLLDSSG--EF-------TAEVVTSATGDFRFF-AAPGSWTVRALSRGGN 66 (85)
T ss_pred ceEEEEEEEe-cCC------cCCCCeEEEEEcCCC--Ce-------EEEEEecCCccEEEE-eCCCceEEEEEccCCC
Confidence 3578999999 566 899999999975542 12 112457899999994 8999999999987644
No 27
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.09 E-value=0.7 Score=47.67 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=50.4
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccce-------eE--EEeCCCcceEeCcccCCceEEE
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQ-------FW--TSADEDGYFSITAVRAGDYNLY 404 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yq-------Yw--t~td~~G~FtI~nVrpGtY~L~ 404 (649)
+|=.|+|+|+..++ .|..+|.|=+++.+..|......+.+. =| +.||++|.|.|.-|+||.|--.
T Consensus 71 e~i~l~G~VlD~~G------~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp~~ 144 (226)
T COG3485 71 ERILLEGRVLDGNG------RPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYPWR 144 (226)
T ss_pred ceEEEEEEEECCCC------CCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeecccccCC
Confidence 68899999999887 999999999987777775542222222 23 5689999999999999998544
No 28
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=88.90 E-value=0.88 Score=47.55 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=49.0
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCccccc---cccee--EEEeCCCcceEeCcccCCceEE
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQREC---KDYQF--WTSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~---~~yqY--wt~td~~G~FtI~nVrpGtY~L 403 (649)
+.=.|+|+|...++ +|..+|.|=++....+|....+. ....+ +..||++|+|.|.-|+||-|-+
T Consensus 97 ~~l~v~G~V~D~~G------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Ypi 165 (246)
T TIGR02465 97 KPLLIRGTVRDLSG------TPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQI 165 (246)
T ss_pred cEEEEEEEEEcCCC------CCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCCC
Confidence 45789999997776 89999999998777777443221 22333 5778999999999999999853
No 29
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=88.23 E-value=1 Score=45.47 Aligned_cols=64 Identities=25% Similarity=0.445 Sum_probs=48.5
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCccccc--------ccceeE--EEeCCCcceEeCcccCCceEE
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQREC--------KDYQFW--TSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~--------~~yqYw--t~td~~G~FtI~nVrpGtY~L 403 (649)
++=.|+|+|+..++ +|..+|.|=++.....|-...+. .+++-| ..||++|+|.+.-|+||.|..
T Consensus 38 ~~l~l~G~V~D~~g------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~ 111 (193)
T TIGR02423 38 ERIRLEGRVLDGDG------HPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPD 111 (193)
T ss_pred CEEEEEEEEECCCC------CCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCC
Confidence 45689999987665 89999999998777766443221 244444 468999999999999998864
No 30
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=87.76 E-value=1.1 Score=46.20 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=48.9
Q ss_pred CCCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccc--------cccceeE--EEeCCCcceEeCcccCCceE
Q 042458 333 DQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRE--------CKDYQFW--TSADEDGYFSITAVRAGDYN 402 (649)
Q Consensus 333 s~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~--------~~~yqYw--t~td~~G~FtI~nVrpGtY~ 402 (649)
.++=.|+|+|...++ +|..+|.|=++..+..|-...+ ..+++.+ ..||++|.|.|.-|+||.|.
T Consensus 63 G~~i~l~G~V~D~~G------~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp 136 (220)
T cd03464 63 GERIIVHGRVLDEDG------RPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYP 136 (220)
T ss_pred CCEEEEEEEEECCCC------CCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCcc
Confidence 346788999997766 8999999999877666644322 1234434 46799999999999999995
Q ss_pred E
Q 042458 403 L 403 (649)
Q Consensus 403 L 403 (649)
+
T Consensus 137 ~ 137 (220)
T cd03464 137 W 137 (220)
T ss_pred C
Confidence 4
No 31
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=87.63 E-value=1.2 Score=44.41 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=40.6
Q ss_pred CeEEEEEEEeeccccccccccCCccEEEecCCCCCCCccccc-------ccceeEEEeCCCcceEeCcccCCceEE
Q 042458 335 RGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQREC-------KDYQFWTSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 335 RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~-------~~yqYwt~td~~G~FtI~nVrpGtY~L 403 (649)
.=.|.|+|...++ +|..+|.|=++.....|....+. ....=+..||++|.|++.-|+||.|.+
T Consensus 29 ~l~l~G~V~D~~g------~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~~ 98 (183)
T PF00775_consen 29 PLVLHGRVIDTDG------KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYPI 98 (183)
T ss_dssp EEEEEEEEEETTS------SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EEE
T ss_pred EEEEEEEEECCCC------CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCCC
Confidence 4589999998776 89999999998766666333221 122234678999999999999999975
No 32
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=87.07 E-value=1.4 Score=51.43 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=55.5
Q ss_pred ceEEEEEEecCCCCCccEEEEEEeecc-----CCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEEeeeEEEEEEeeC
Q 042458 526 STWQIKFELDDVNQSSTYKLRVAIASA-----NLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPG 600 (649)
Q Consensus 526 ~~w~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa 600 (649)
..-.|.|.+...+....++|+|.+.-+ ..+.++|.|||..+. +..+...+. .....+|+||.
T Consensus 29 ~~~~~~f~v~~~~~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~-----s~~l~~~~~--------~~~~~~i~Ip~ 95 (605)
T PF03170_consen 29 ASRTIYFPVPADWVVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVG-----SIPLDAESA--------QPQTVTIPIPP 95 (605)
T ss_pred CceEEEEEcCCCccccceEEEEEEEECcccCCCcceEEEEECCEEeE-----EEecCcCCC--------CceEEEEecCh
Confidence 456777888777655567777777765 236899999998654 222222222 24678999999
Q ss_pred CceeeeccEEEEEeecC
Q 042458 601 ARLVSGDNTIFFIQPRS 617 (649)
Q Consensus 601 ~~L~~G~NtI~l~~~~g 617 (649)
. |..|.|.|.|.....
T Consensus 96 ~-l~~g~N~l~~~~~~~ 111 (605)
T PF03170_consen 96 A-LIKGFNRLTFEFIGH 111 (605)
T ss_pred h-hcCCceEEEEEEEec
Confidence 9 999999999997553
No 33
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=86.76 E-value=0.72 Score=37.33 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.0
Q ss_pred EEEeCCCc-ceEeCcccCCceEEEEEEC
Q 042458 382 WTSADEDG-YFSITAVRAGDYNLYAWVP 408 (649)
Q Consensus 382 wt~td~~G-~FtI~nVrpGtY~L~a~~~ 408 (649)
|....... .+++.+++||+|+|.|.+.
T Consensus 21 W~~~~~~~~~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 21 WITLGSYSNSISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp EEEESSTS-EEEEES--SEEEEEEEEEE
T ss_pred EEECCCCcEEEEEEeCCCEEEEEEEEEE
Confidence 77777777 9999999999999999974
No 34
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=86.08 E-value=1.8 Score=44.59 Aligned_cols=65 Identities=25% Similarity=0.427 Sum_probs=48.4
Q ss_pred CCCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccc--------cccceeE--EEeCCCcceEeCcccCCceE
Q 042458 333 DQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRE--------CKDYQFW--TSADEDGYFSITAVRAGDYN 402 (649)
Q Consensus 333 s~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~--------~~~yqYw--t~td~~G~FtI~nVrpGtY~ 402 (649)
.++=.|+|+|...++ +|..+|.|=++..+.+|....+ ..++..+ ..||++|.|.|.-|+||-|.
T Consensus 58 G~~i~l~G~V~D~~g------~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~ 131 (220)
T TIGR02422 58 GERIIVHGRVLDEDG------RPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYP 131 (220)
T ss_pred CCEEEEEEEEECCCC------CCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCcc
Confidence 456789999997765 8999999999877666644322 1233323 45899999999999999985
Q ss_pred E
Q 042458 403 L 403 (649)
Q Consensus 403 L 403 (649)
.
T Consensus 132 ~ 132 (220)
T TIGR02422 132 W 132 (220)
T ss_pred C
Confidence 4
No 35
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=85.92 E-value=3 Score=43.92 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=48.5
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccc---cccceeE--EEeCCCcceEeCcccCCceEE
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRE---CKDYQFW--TSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~---~~~yqYw--t~td~~G~FtI~nVrpGtY~L 403 (649)
++=.|+|+|...++ +|..+|.|=++..+..|....+ ...+..+ ..||++|.|.+.-|+||-|-+
T Consensus 103 ~~l~l~G~V~D~~G------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Ypi 171 (256)
T cd03458 103 EPLFVHGTVTDTDG------KPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPYPI 171 (256)
T ss_pred cEEEEEEEEEcCCC------CCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCccC
Confidence 45689999998776 8999999999877776744321 2233333 568999999999999999954
No 36
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=85.36 E-value=1.4 Score=46.10 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=47.2
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCccccc---cccee--EEEeCCCcceEeCcccCCceEE
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQREC---KDYQF--WTSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~---~~yqY--wt~td~~G~FtI~nVrpGtY~L 403 (649)
++=.|+|+|...++ +|..+|.|=++.....|....+. ....+ ...||++|.|.+.-|+||-|-+
T Consensus 98 ~~l~l~G~V~D~~G------~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Ypi 166 (247)
T cd03462 98 KPLLFRGTVKDLAG------APVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPYQI 166 (247)
T ss_pred CEEEEEEEEEcCCC------CCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCcCC
Confidence 45689999998776 89999999998776666333211 11111 4568999999999999999843
No 37
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=84.98 E-value=2.2 Score=51.08 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=42.5
Q ss_pred eEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECc
Q 042458 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPG 409 (649)
Q Consensus 336 GtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G 409 (649)
=+|+|+|.+..+ -.+.++-|-|.... +--=-|.|+++|.|.+.||.||+|.+.+..+.
T Consensus 119 Fsv~GkVlgaag------gGpagV~velrs~e----------~~iast~T~~~Gky~f~~iiPG~Yev~ashp~ 176 (1165)
T KOG1948|consen 119 FSVRGKVLGAAG------GGPAGVLVELRSQE----------DPIASTKTEDGGKYEFRNIIPGKYEVSASHPA 176 (1165)
T ss_pred eeEeeEEeeccC------CCcccceeeccccc----------CcceeeEecCCCeEEEEecCCCceEEeccCcc
Confidence 377888877643 34456666665331 22336889999999999999999999998765
No 38
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=84.78 E-value=9.6 Score=34.91 Aligned_cols=89 Identities=19% Similarity=0.390 Sum_probs=49.1
Q ss_pred ceEEEEEE-ecCCCCCccEEEEEEeecc-CCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEEeeeEEEEEEeeCCce
Q 042458 526 STWQIKFE-LDDVNQSSTYKLRVAIASA-NLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARL 603 (649)
Q Consensus 526 ~~w~I~F~-L~~~~~~~~~tLriala~a-~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 603 (649)
+.| |.|+ ++-. ..+.+++.|..+.. ..+.++|++++.... ...+..++.... . -.+...+.+|+ |
T Consensus 39 g~w-~~y~~vd~~-~~g~~~i~~~~as~~~~~~i~v~~d~~~G~--~~~~~~~p~tg~-----~-~~~~~~~~~v~---~ 105 (129)
T smart00606 39 GDW-IAYKDVDFG-SSGAYTFTARVASGNAGGSIELRLDSPTGT--LVGTVDVPSTGG-----W-QTYQTVSATVT---L 105 (129)
T ss_pred CCE-EEEEeEecC-CCCceEEEEEEeCCCCCceEEEEECCCCCc--EEEEEEeCCCCC-----C-ccCEEEEEEEc---c
Confidence 444 5555 4322 24677777777765 345899999975432 112222222111 0 12333344443 4
Q ss_pred eeeccEEEEEeecCCCCCceEEEEEEEE
Q 042458 604 VSGDNTIFFIQPRSTSPFQGIMYDYIRF 631 (649)
Q Consensus 604 ~~G~NtI~l~~~~gss~f~~vmyD~IrL 631 (649)
.+|.++|+|....++ .+..|.+++
T Consensus 106 ~~G~~~l~~~~~~~~----~~~ld~~~F 129 (129)
T smart00606 106 PAGVHDVYLVFKGGN----YFNIDWFRF 129 (129)
T ss_pred CCceEEEEEEEECCC----cEEEEEEEC
Confidence 489999999876553 277777653
No 39
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=83.11 E-value=2.3 Score=45.40 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=49.4
Q ss_pred CCCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCccc--c-cccceeE--EEeCCCcceEeCcccCCceEE
Q 042458 333 DQRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQR--E-CKDYQFW--TSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 333 s~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~--~-~~~yqYw--t~td~~G~FtI~nVrpGtY~L 403 (649)
.++=.|+|+|...++ +|..+|.|=++.....|.... . ..+++.+ ..||++|.|.+.-|+||-|-+
T Consensus 122 Gepl~l~G~V~D~~G------~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Ypi 191 (282)
T cd03460 122 GETLVMHGTVTDTDG------KPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYGV 191 (282)
T ss_pred CCEEEEEEEEECCCC------CCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCcC
Confidence 356789999998776 899999999988777774432 1 2233333 668999999999999999953
No 40
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=82.83 E-value=2.5 Score=45.10 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=48.8
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCccc---ccccceeE--EEeCCCcceEeCcccCCceEE
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQR---ECKDYQFW--TSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~---~~~~yqYw--t~td~~G~FtI~nVrpGtY~L 403 (649)
++=.|+|+|...++ +|..+|.|=++.....|.... ...+++.+ ..||++|.|.+.-|+||-|-+
T Consensus 127 ~pl~v~G~V~D~~G------~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Ypi 195 (285)
T TIGR02439 127 ETLFLHGQVTDADG------KPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYGC 195 (285)
T ss_pred cEEEEEEEEECCCC------CCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCcC
Confidence 45689999998776 899999999988777774432 12334444 568999999999999999953
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=82.79 E-value=26 Score=43.86 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=37.3
Q ss_pred CceEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEECCccchhh
Q 042458 4 PAVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLE 46 (649)
Q Consensus 4 ~~v~l~~~g~~~vidNg~l~~tv~k~~G~itsi~y~G~enll~ 46 (649)
.++.+.+++..++|.++.++++|+|.+|.|+|++++|.+ |+.
T Consensus 715 ~~~~~~~~~~~~~i~~~~~~~~fdk~tG~l~s~~~~g~~-ll~ 756 (1021)
T PRK10340 715 RPLTLEEDRLSCTVRGYNFAITFSKVSGKLTSWQVNGES-LLT 756 (1021)
T ss_pred CCeeEEecCCEEEEEeCCEEEEEECCcceEEEEEeCCee-eec
Confidence 346788899999999999999999999999999999996 653
No 42
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=82.51 E-value=2.5 Score=44.97 Aligned_cols=64 Identities=25% Similarity=0.363 Sum_probs=47.3
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccc---cccceeE--EEeCCCcceEeCcccCCceEE
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRE---CKDYQFW--TSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~---~~~yqYw--t~td~~G~FtI~nVrpGtY~L 403 (649)
++=.|+|+|...++ +|..+|.|=++.....|....+ ...+++. ..||++|.|.+.-|+||-|-+
T Consensus 131 ~pl~v~G~V~D~~G------~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Ypi 199 (281)
T TIGR02438 131 TPLVFSGQVTDLDG------NGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQI 199 (281)
T ss_pred CEEEEEEEEEcCCC------CCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 45689999997776 8999999999776666643221 1222233 568999999999999999964
No 43
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=81.07 E-value=3.2 Score=44.14 Aligned_cols=64 Identities=22% Similarity=0.369 Sum_probs=48.2
Q ss_pred CCeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccc---cccceeE--EEeCCCcceEeCcccCCceEE
Q 042458 334 QRGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRE---CKDYQFW--TSADEDGYFSITAVRAGDYNL 403 (649)
Q Consensus 334 ~RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~---~~~yqYw--t~td~~G~FtI~nVrpGtY~L 403 (649)
++=.|+|+|...++ +|..+|.|=++.....|....+ ......+ ..||++|.|.+.-|+||-|-+
T Consensus 119 ~~l~v~G~V~D~~G------~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Ypi 187 (277)
T cd03461 119 EPCFVHGRVTDTDG------KPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYPI 187 (277)
T ss_pred CEEEEEEEEEcCCC------CCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcCC
Confidence 45789999998776 8999999999877766633321 1223333 568999999999999999975
No 44
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=79.45 E-value=4.6 Score=38.55 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=45.3
Q ss_pred EEEEEEecCCCCCccEEEEEEeeccCCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEEeeeEEEEEEeeCCceeeec
Q 042458 528 WQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGD 607 (649)
Q Consensus 528 w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 607 (649)
.+=+|+|++......+.|++... .....|.|||+.++ ...+.+..++++|+. .|+.|.
T Consensus 72 Yr~~f~lp~~~~~~~~~L~f~gv---~~~a~v~vNG~~vg------------------~~~~~~~~~~~dIt~-~l~~g~ 129 (167)
T PF02837_consen 72 YRRTFTLPADWKGKRVFLRFEGV---DYAAEVYVNGKLVG------------------SHEGGYTPFEFDITD-YLKPGE 129 (167)
T ss_dssp EEEEEEESGGGTTSEEEEEESEE---ESEEEEEETTEEEE------------------EEESTTS-EEEECGG-GSSSEE
T ss_pred EEEEEEeCchhcCceEEEEeccc---eEeeEEEeCCeEEe------------------eeCCCcCCeEEeChh-hccCCC
Confidence 34458887765333455555433 35678999997442 123557789999975 889998
Q ss_pred -cEEEEEeecC
Q 042458 608 -NTIFFIQPRS 617 (649)
Q Consensus 608 -NtI~l~~~~g 617 (649)
|+|.+.+.+.
T Consensus 130 ~N~l~V~v~~~ 140 (167)
T PF02837_consen 130 ENTLAVRVDNW 140 (167)
T ss_dssp EEEEEEEEESS
T ss_pred CEEEEEEEeec
Confidence 9999999764
No 45
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=78.54 E-value=3 Score=50.29 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=49.7
Q ss_pred EEEEEecCCCCCccEEEEEEeecc-----CCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEEeeeEEEEEEeeCCce
Q 042458 529 QIKFELDDVNQSSTYKLRVAIASA-----NLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARL 603 (649)
Q Consensus 529 ~I~F~L~~~~~~~~~tLriala~a-----~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 603 (649)
.|.|.+...+....++|+|...-+ ..++++|.|||+.+. +..+...+ .|.....+|+||+ .|
T Consensus 84 ~i~f~vp~d~~v~~A~L~L~y~~Sp~l~~~~S~L~V~lNg~~v~-----s~pL~~~~-------~~~~~~~~i~IP~-~l 150 (756)
T PRK11114 84 GIEFGVRSDEVVTKARLNLEYTYSPALLPDLSHLKVYLNGELMG-----TLPLDKEQ-------LGKKVLAQLPIDP-RF 150 (756)
T ss_pred eeEeecCccccccCcEEEEEEEECCCCCCCCCeEEEEECCEEeE-----EEecCccc-------CCCcceeEEecCH-HH
Confidence 677777766644456666665553 347899999998654 11221111 2445788999999 56
Q ss_pred eeeccEEEEEeec
Q 042458 604 VSGDNTIFFIQPR 616 (649)
Q Consensus 604 ~~G~NtI~l~~~~ 616 (649)
..|.|.|.|....
T Consensus 151 ~~g~N~L~~~~~~ 163 (756)
T PRK11114 151 ITDFNRLRLEFIG 163 (756)
T ss_pred cCCCceEEEEEec
Confidence 6899999998643
No 46
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=76.54 E-value=9.9 Score=40.17 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=25.8
Q ss_pred EEECCeEEEEEeCCCeeEEEEEECCccchhh
Q 042458 16 VLDNGILEVTFSYPGGIVTGIRYNDIDNLLE 46 (649)
Q Consensus 16 vidNg~l~~tv~k~~G~itsi~y~G~enll~ 46 (649)
+|.++..++.|+|.+|.|+|++|+|.+ |+.
T Consensus 1 tV~g~~f~~~Fdk~~G~l~s~~~~g~~-ll~ 30 (276)
T PF02929_consen 1 TVSGKDFSYVFDKKTGTLTSYKYNGKE-LLK 30 (276)
T ss_dssp -EEETTEEEEEETTTTCEEEEEETTEE-EEC
T ss_pred CCccCCEEEEEECCCCeEEEEEECCEE-eec
Confidence 467778999999999999999999996 663
No 47
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=76.08 E-value=9.2 Score=34.91 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=34.0
Q ss_pred EEEE-EEeeccCCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEE-eeeEEEEEEeeCCceeeeccEEEEE
Q 042458 543 YKLR-VAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIH-GLYWLFNVDVPGARLVSGDNTIFFI 613 (649)
Q Consensus 543 ~tLr-iala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~-G~~~~~~~~ipa~~L~~G~NtI~l~ 613 (649)
..|+ +........+.+|.|||+.++. ++ +..-..+|.||++.|+.++|.|.+-
T Consensus 50 ~~~~~l~~~~g~~~~~~vwVNG~~~G~------------------~~~~~g~q~tf~~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 50 TSLTPLNIQGGNAFRASVWVNGWFLGS------------------YWPGIGPQTTFSVPAGILKYGNNVLVVL 104 (111)
T ss_dssp EEEE-EEECSSTTEEEEEEETTEEEEE------------------EETTTECCEEEEE-BTTBTTCEEEEEEE
T ss_pred eeEEEEeccCCCceEEEEEECCEEeee------------------ecCCCCccEEEEeCceeecCCCEEEEEE
Confidence 4455 5555566779999999986541 11 1111289999999999985555443
No 48
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=75.17 E-value=7.9 Score=38.31 Aligned_cols=62 Identities=23% Similarity=0.268 Sum_probs=47.6
Q ss_pred CeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEE
Q 042458 335 RGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWV 407 (649)
Q Consensus 335 RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~ 407 (649)
-..++.+|+- +| +|..++.|.+...+. |. +........+||++|.++|+=-+||.|-|.+..
T Consensus 150 g~~~~~~vl~-~G------kPl~~a~V~~~~~~~---~~-~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~ 211 (215)
T PF10670_consen 150 GDPLPFQVLF-DG------KPLAGAEVEAFSPGG---WY-DVEHEAKTLKTDANGRATFTLPRPGLWLIRASH 211 (215)
T ss_pred CCEEEEEEEE-CC------eEcccEEEEEEECCC---cc-ccccceEEEEECCCCEEEEecCCCEEEEEEEEE
Confidence 4678889885 66 899999999875553 21 112227789999999999998899999998854
No 49
>KOG2649 consensus Zinc carboxypeptidase [General function prediction only]
Probab=73.17 E-value=11 Score=42.99 Aligned_cols=78 Identities=12% Similarity=0.193 Sum_probs=55.1
Q ss_pred eEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEEECceeeeee
Q 042458 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAWVPGFIGDYR 415 (649)
Q Consensus 336 GtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G~~G~~~ 415 (649)
--|+|-|....| +|..+|+|-+..-.. =.+|...|.|=- =..||.|.|+|.+.|+. .
T Consensus 378 ~GIkG~V~D~~G------~~I~NA~IsV~ginH-------------dv~T~~~GDYWR-LL~PG~y~vta~A~Gy~---~ 434 (500)
T KOG2649|consen 378 RGIKGLVFDDTG------NPIANATISVDGINH-------------DVTTAKEGDYWR-LLPPGKYIITASAEGYD---P 434 (500)
T ss_pred hccceeEEcCCC------CccCceEEEEecCcC-------------ceeecCCCceEE-eeCCcceEEEEecCCCc---c
Confidence 358999988766 899999999975543 234556675432 37899999999999764 4
Q ss_pred eeeEEEEcCCceeeccceEEeC
Q 042458 416 YDVVVNITPGFDIDMGDLVYEP 437 (649)
Q Consensus 416 ~~~~VtV~aG~t~~l~~l~~~~ 437 (649)
...+|+|..-..+.. ++++.+
T Consensus 435 ~tk~v~V~~~~a~~~-df~L~~ 455 (500)
T KOG2649|consen 435 VTKTVTVPPDRAARV-NFTLQR 455 (500)
T ss_pred eeeEEEeCCCCccce-eEEEec
Confidence 556788887333344 577754
No 50
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=72.20 E-value=6.1 Score=36.53 Aligned_cols=50 Identities=22% Similarity=0.136 Sum_probs=36.1
Q ss_pred cccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceE-----eCcccCCceEEEEEEC
Q 042458 353 YISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFS-----ITAVRAGDYNLYAWVP 408 (649)
Q Consensus 353 ~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~Ft-----I~nVrpGtY~L~a~~~ 408 (649)
++||.++.|-|..... +.|+ .---+.||++|+.. ...+.||.|+|..-..
T Consensus 13 G~PAagv~V~L~~~~~-~~~~-----~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g 67 (112)
T TIGR02962 13 GKPAAGVPVTLYRLDG-SGWT-----PLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTG 67 (112)
T ss_pred CccCCCCEEEEEEecC-CCeE-----EEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhh
Confidence 4999999999964321 1242 23346799999987 4567899999998764
No 51
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=67.92 E-value=4.2 Score=37.56 Aligned_cols=51 Identities=25% Similarity=0.234 Sum_probs=34.9
Q ss_pred cccCCccEEEecCCCCCCCcccccccceeEEEeCCCcce-----EeCcccCCceEEEEEEC
Q 042458 353 YISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYF-----SITAVRAGDYNLYAWVP 408 (649)
Q Consensus 353 ~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~F-----tI~nVrpGtY~L~a~~~ 408 (649)
++||.++-|-|.....+++|+ .-.-+.||++|+. .-..+.+|.|+|..-..
T Consensus 13 G~PA~gv~V~L~~~~~~~~~~-----~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 68 (112)
T PF00576_consen 13 GKPAAGVPVTLYRLDSDGSWT-----LLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTG 68 (112)
T ss_dssp TEE-TT-EEEEEEEETTSCEE-----EEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHH
T ss_pred CCCccCCEEEEEEecCCCCcE-----EEEEEEECCCCcccccccccccccceEEEEEEEHH
Confidence 499999999997544344563 3345779999988 34577899999998753
No 52
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=67.16 E-value=9.9 Score=44.48 Aligned_cols=49 Identities=29% Similarity=0.361 Sum_probs=35.0
Q ss_pred ceEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEE--CCccchhhccccCCCcc
Q 042458 5 AVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRY--NDIDNLLEVLNDELNRG 55 (649)
Q Consensus 5 ~v~l~~~g~~~vidNg~l~~tv~k~~G~itsi~y--~G~enll~~~~~~~~~g 55 (649)
+|-.-..+++++++||+|.|+|++ +|.||||.- .|.| .++...+.++.|
T Consensus 706 p~~~yq~Dd~~~L~Ng~lrV~i~p-~G~itSl~d~~~grE-~ld~~~Grn~~G 756 (1078)
T KOG4342|consen 706 PVFVYQTDDSVTLDNGILRVKIDP-TGRITSLVDVASGRE-ALDTAEGRNAVG 756 (1078)
T ss_pred ceeEEecCCeEEEECCEEEEEECC-CCceeeeeehhcccc-hhcccccccccC
Confidence 344555788999999999999986 699999964 3443 554444444444
No 53
>PLN03059 beta-galactosidase; Provisional
Probab=66.80 E-value=6 Score=47.98 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=53.2
Q ss_pred ceEEEEEEecCCCCCccEEEEEEeeccCCceeEEEEcCCCCCC--CCccccccCCCCeeeeeeE--------EeeeEEEE
Q 042458 526 STWQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNR--PLFSSGLIGRDNSIARHGI--------HGLYWLFN 595 (649)
Q Consensus 526 ~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~--p~~~~~~~~~~~~i~R~~~--------~G~~~~~~ 595 (649)
+=.+-.|++++.. ... +|-....+.=+|.|||..+++ |.. +..-+=+.|-+|+++ .|.-...-
T Consensus 621 twYK~~Fd~p~g~--Dpv----~LDm~gmGKG~aWVNG~nIGRYW~~~-a~~~gC~~c~y~g~~~~~kc~~~cggP~q~l 693 (840)
T PLN03059 621 TWYKTTFDAPGGN--DPL----ALDMSSMGKGQIWINGQSIGRHWPAY-TAHGSCNGCNYAGTFDDKKCRTNCGEPSQRW 693 (840)
T ss_pred eEEEEEEeCCCCC--CCE----EEecccCCCeeEEECCcccccccccc-cccCCCccccccccccchhhhccCCCceeEE
Confidence 3346778764422 112 233334566789999999885 221 111122456777777 24556667
Q ss_pred EEeeCCceeeeccEEEEEeecC
Q 042458 596 VDVPGARLVSGDNTIFFIQPRS 617 (649)
Q Consensus 596 ~~ipa~~L~~G~NtI~l~~~~g 617 (649)
+.||+++|++|.|+|.|==..|
T Consensus 694 YHVPr~~Lk~g~N~lViFEe~g 715 (840)
T PLN03059 694 YHVPRSWLKPSGNLLIVFEEWG 715 (840)
T ss_pred EeCcHHHhccCCceEEEEEecC
Confidence 8899999999999987765444
No 54
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=66.38 E-value=9.9 Score=35.27 Aligned_cols=51 Identities=20% Similarity=0.175 Sum_probs=35.9
Q ss_pred cccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEe----CcccCCceEEEEEEC
Q 042458 353 YISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSI----TAVRAGDYNLYAWVP 408 (649)
Q Consensus 353 ~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI----~nVrpGtY~L~a~~~ 408 (649)
++||+++-|-|.....+++|+ .---++||+||+..- ..+.+|.|+|..-..
T Consensus 13 G~PAagv~V~L~~~~~~~~w~-----~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~ 67 (113)
T cd05469 13 GSPAANVAIKVFRKTADGSWE-----IFATGKTNEDGELHGLITEEEFXAGVYRVEFDTK 67 (113)
T ss_pred CccCCCCEEEEEEecCCCceE-----EEEEEEECCCCCccCccccccccceEEEEEEehH
Confidence 499999999996432112352 233467999999852 356899999998763
No 55
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=65.58 E-value=9.8 Score=44.52 Aligned_cols=78 Identities=19% Similarity=0.162 Sum_probs=52.3
Q ss_pred CceEEEEEEecCCC---CCccEEEEEEeecc-----CCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEEeeeEEEEE
Q 042458 525 GSTWQIKFELDDVN---QSSTYKLRVAIASA-----NLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNV 596 (649)
Q Consensus 525 ~~~w~I~F~L~~~~---~~~~~tLriala~a-----~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~ 596 (649)
..+..+.|.|+..- ......|.+..+.+ ..+++.|.|||.-+. +..+.+ +-.+....+++
T Consensus 323 ~~~~~~~f~lP~dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~-----s~~L~~-------~~~~~~~~~~v 390 (605)
T PF03170_consen 323 PQPISFNFRLPPDLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIG-----SLPLTP-------ADGAGFDRYTV 390 (605)
T ss_pred CCcceeEeeCCccccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEE-----eEECCC-------CCCCccceeEE
Confidence 45778888887642 12345555555554 356899999998654 112211 23345678999
Q ss_pred EeeCCceeeeccEEEEEee
Q 042458 597 DVPGARLVSGDNTIFFIQP 615 (649)
Q Consensus 597 ~ipa~~L~~G~NtI~l~~~ 615 (649)
.|| ..++.|.|.|.|...
T Consensus 391 ~iP-~~~~~~~N~l~~~f~ 408 (605)
T PF03170_consen 391 SIP-RLLLPGRNQLQFEFD 408 (605)
T ss_pred ecC-chhcCCCcEEEEEEE
Confidence 999 999999999988753
No 56
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=64.81 E-value=92 Score=32.84 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=29.0
Q ss_pred cEEEEECCeEEEEEeCCCe-eEEEEEECCccchh
Q 042458 13 RHVVLDNGILEVTFSYPGG-IVTGIRYNDIDNLL 45 (649)
Q Consensus 13 ~~~vidNg~l~~tv~k~~G-~itsi~y~G~enll 45 (649)
..+.|+|+.++++|+-.-| .|.++.++|.+|++
T Consensus 5 ~~~~l~N~~i~l~Vtp~~GgRIl~~~~~g~~N~~ 38 (274)
T PF14315_consen 5 NCLRLSNGDIELIVTPDVGGRILSFGLNGGENLF 38 (274)
T ss_pred eEEEEECCCEEEEEecCCCCEEEEEEeCCCceEE
Confidence 5689999998888886666 99999999988888
No 57
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=62.50 E-value=20 Score=36.12 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=43.7
Q ss_pred eEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccc---c------ccce-e--EEEeCCCcceEeCcccCCceE
Q 042458 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRE---C------KDYQ-F--WTSADEDGYFSITAVRAGDYN 402 (649)
Q Consensus 336 GtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~---~------~~yq-Y--wt~td~~G~FtI~nVrpGtY~ 402 (649)
=.+.|+|...+. ++|..+|.|=++.....|..... . .+.. . +..||++|.|+|.-|.||-|.
T Consensus 27 l~l~g~V~D~~~-----c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 27 LTLDLQVVDVAT-----CCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEEEeCCC-----CccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 478899886542 47999999999876666633321 1 1111 2 366899999999999999985
No 58
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=61.01 E-value=1.6e+02 Score=30.18 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=33.5
Q ss_pred ceeEEEeCCCcceEeCcccCCceEEEEEECc--eee----eeeeeeEEEEcCCceeeccceEE
Q 042458 379 YQFWTSADEDGYFSITAVRAGDYNLYAWVPG--FIG----DYRYDVVVNITPGFDIDMGDLVY 435 (649)
Q Consensus 379 yqYwt~td~~G~FtI~nVrpGtY~L~a~~~G--~~G----~~~~~~~VtV~aG~t~~l~~l~~ 435 (649)
.++|..++-. .-.| -+++|+|+|.|+... ..| .|.-+.+++|.+|+++.+. ++-
T Consensus 47 ~~~~~~~~~~-~~~i-~L~~G~Ytv~A~~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~-v~C 106 (235)
T PF14900_consen 47 VKYWKYSEMP-GESI-ELPVGSYTVKASYGDNVAAGFDKPYYEGSTTFTIEKGETTTVS-VTC 106 (235)
T ss_pred EEecchhccc-cceE-eecCCcEEEEEEcCCCccccccCceeecceeEEEecCCcEEEE-EEE
Confidence 3344444443 1223 367999999999422 112 2445668999999998874 654
No 59
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=60.44 E-value=15 Score=34.55 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=42.5
Q ss_pred CeEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceE----eCcccCCceEEEEEE
Q 042458 335 RGNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFS----ITAVRAGDYNLYAWV 407 (649)
Q Consensus 335 RGtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~Ft----I~nVrpGtY~L~a~~ 407 (649)
|-.|+=.|+... .++||.++.|-|......+.|+ ..--++||++|+.. -..+.+|.|+|..-.
T Consensus 6 ~~~ittHVLDt~-----~G~PAaGV~V~L~~~~~~~~w~-----~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~t 72 (121)
T cd05821 6 KCPLMVKVLDAV-----RGSPAANVAVKVFKKTADGSWE-----PFASGKTTETGEIHGLTTDEQFTEGVYKVEFDT 72 (121)
T ss_pred CCCcEEEEEECC-----CCccCCCCEEEEEEecCCCceE-----EEEEEEECCCCCCCCccCccccCCeeEEEEEeh
Confidence 556777665543 3599999999996422112352 33457899999985 234678999999865
No 60
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=59.70 E-value=16 Score=33.85 Aligned_cols=50 Identities=22% Similarity=0.197 Sum_probs=35.9
Q ss_pred cccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEe-----CcccCCceEEEEEEC
Q 042458 353 YISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSI-----TAVRAGDYNLYAWVP 408 (649)
Q Consensus 353 ~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI-----~nVrpGtY~L~a~~~ 408 (649)
++||.++-|-|..... ++| ..-.-+.||++|+..- ..+.+|+|+|..-..
T Consensus 13 G~PAagv~V~L~~~~~-~~~-----~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 67 (112)
T cd05822 13 GKPAAGVAVTLYRLDG-NGW-----TLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTG 67 (112)
T ss_pred CcccCCCEEEEEEecC-CCe-----EEEEEEEECCCCCccCcccccccCCCeeEEEEEEhh
Confidence 4999999999964332 124 2233477999999853 458899999998764
No 61
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=57.23 E-value=23 Score=30.38 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=29.8
Q ss_pred EEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccC
Q 042458 339 SGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRA 398 (649)
Q Consensus 339 sG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrp 398 (649)
+|+|.=.. +|+.++.|-|...... .....-=-+.||++|+|+|..-..
T Consensus 1 ~G~L~C~~-------~P~~~~~V~L~e~d~~-----~~Ddll~~~~Td~~G~F~l~G~~~ 48 (80)
T PF01060_consen 1 KGQLMCGG-------KPAKNVKVKLWEDDYF-----DPDDLLDETKTDSDGNFELSGSTN 48 (80)
T ss_pred CeEEEeCC-------ccCCCCEEEEEECCCC-----CCCceeEEEEECCCceEEEEEEcc
Confidence 46666543 7999999999644320 011111127789999999875433
No 62
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=54.74 E-value=44 Score=31.38 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=43.7
Q ss_pred eEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEe-----CcccCCceEEEEEECce
Q 042458 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSI-----TAVRAGDYNLYAWVPGF 410 (649)
Q Consensus 336 GtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI-----~nVrpGtY~L~a~~~G~ 410 (649)
|.++=.|+... ..+||.++.|.|..-..+ .|+ ----+.||.||+-.- ..+++|.|+|..-+
T Consensus 9 G~LTTHVLDta-----~GkPAagv~V~L~rl~~~-~~~-----~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~--- 74 (124)
T COG2351 9 GRLTTHVLDTA-----SGKPAAGVKVELYRLEGN-QWE-----LLKTVVTNADGRIDAPLLAGETLATGIYELVFHT--- 74 (124)
T ss_pred ceeeeeeeecc-----cCCcCCCCEEEEEEecCC-cce-----eeeEEEecCCCcccccccCccccccceEEEEEEc---
Confidence 56666655443 359999999999644322 232 122367899998773 46789999999865
Q ss_pred eeeee
Q 042458 411 IGDYR 415 (649)
Q Consensus 411 ~G~~~ 415 (649)
|||.
T Consensus 75 -gdYf 78 (124)
T COG2351 75 -GDYF 78 (124)
T ss_pred -chhh
Confidence 6654
No 63
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=52.69 E-value=22 Score=44.52 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=36.4
Q ss_pred ceEEEEeCcEEEEECCeEEEEEeCCCeeEEEEEECCccchhh
Q 042458 5 AVNLLIQDRHVVLDNGILEVTFSYPGGIVTGIRYNDIDNLLE 46 (649)
Q Consensus 5 ~v~l~~~g~~~vidNg~l~~tv~k~~G~itsi~y~G~enll~ 46 (649)
.+.+.+.+..++|.++.++++|+|.+|.++|++++|.| |+.
T Consensus 741 ~~~~~~~~~~~~i~~~~~~~~f~~~~G~l~s~~~~g~~-~l~ 781 (1027)
T PRK09525 741 APQLTQDEQDFCIELGNQRWQFNRQSGLLSQWWVGGKE-QLL 781 (1027)
T ss_pred CceEEEcCCeEEEEECCEEEEEECCCceEEEEEECCEE-eec
Confidence 34678889999999999999999999999999999996 553
No 64
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=48.29 E-value=80 Score=28.13 Aligned_cols=64 Identities=19% Similarity=0.344 Sum_probs=33.8
Q ss_pred eEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcc--eEeCcccCCceEEEEEECc
Q 042458 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGY--FSITAVRAGDYNLYAWVPG 409 (649)
Q Consensus 336 GtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~--FtI~nVrpGtY~L~a~~~G 409 (649)
-+++-+|....| .|..+..|-+......+... .... -+.||++|. +++..-++|+|++.|...|
T Consensus 25 ~tltatV~D~~g------npv~g~~V~f~~~~~~~~l~--~~~~--~~~Td~~G~a~~tltst~aG~~~VtA~~~~ 90 (100)
T PF02369_consen 25 NTLTATVTDANG------NPVPGQPVTFSSSSSGGTLS--PTNT--SATTDSNGIATVTLTSTKAGTYTVTATVDG 90 (100)
T ss_dssp EEEEEEEEETTS------EB-TS-EEEE--EESSSEES---CEE---EEE-TTSEEEEEEE-SS-EEEEEEEEETT
T ss_pred EEEEEEEEcCCC------CCCCCCEEEEEEcCCCcEEe--cCcc--ccEECCCEEEEEEEEecCceEEEEEEEECC
Confidence 455555554444 78888888772111111111 0000 357899996 5566779999999999986
No 65
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=45.44 E-value=27 Score=43.73 Aligned_cols=67 Identities=18% Similarity=0.177 Sum_probs=45.6
Q ss_pred EEEEEEecCCCCCccEEEEEEeeccCCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEEeeeEEEEEEeeCCceeeec
Q 042458 528 WQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGD 607 (649)
Q Consensus 528 w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~ 607 (649)
-+=.|.+++........|++..+ .....|.|||+.++. -.|-+..++|+|.. .|+.|+
T Consensus 113 Yrr~F~lp~~~~gkrv~L~FeGV---~s~a~VwvNG~~VG~------------------~~g~~~pfefDIT~-~l~~G~ 170 (1021)
T PRK10340 113 YQRTFTLSDGWQGKQTIIKFDGV---ETYFEVYVNGQYVGF------------------SKGSRLTAEFDISA-MVKTGD 170 (1021)
T ss_pred EEEEEEeCcccccCcEEEEECcc---ceEEEEEECCEEecc------------------ccCCCccEEEEcch-hhCCCc
Confidence 34458887654333455555432 557899999986541 01456778999987 678999
Q ss_pred cEEEEEeec
Q 042458 608 NTIFFIQPR 616 (649)
Q Consensus 608 NtI~l~~~~ 616 (649)
|+|.+.|-+
T Consensus 171 N~LaV~V~~ 179 (1021)
T PRK10340 171 NLLCVRVMQ 179 (1021)
T ss_pred cEEEEEEEe
Confidence 999999853
No 66
>smart00095 TR_THY Transthyretin.
Probab=44.12 E-value=35 Score=32.09 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=39.5
Q ss_pred eEEEEEEEeeccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceE--e--CcccCCceEEEEEE
Q 042458 336 GNVSGRLLVQDEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFS--I--TAVRAGDYNLYAWV 407 (649)
Q Consensus 336 GtVsG~v~~~d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~Ft--I--~nVrpGtY~L~a~~ 407 (649)
-.|+=.|+... .++||.++.|-|......+.|+ .---..||.+|+.. + ..+.+|.|+|..-.
T Consensus 4 ~plTtHVLDt~-----~G~PAagv~V~L~~~~~~~~w~-----~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~t 69 (121)
T smart00095 4 CPLMVKVLDAV-----RGSPAVNVAVKVFKKTEEGTWE-----PFASGKTNESGEIHELTTDEKFVEGLYKVEFDT 69 (121)
T ss_pred CCeEEEEEECC-----CCccCCCCEEEEEEeCCCCceE-----EEEEEecCCCccccCccCcccccceEEEEEEeh
Confidence 34555554432 3499999999995422112342 12236789999884 1 35679999999865
No 67
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=43.92 E-value=1.6e+02 Score=32.57 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=66.5
Q ss_pred EEEECCeEEEEEeCCCeeEEEE--EECCccchhhccccCCCcceeEEEecCCCCCCccceeeeeecceEEEEEecCCEEE
Q 042458 15 VVLDNGILEVTFSYPGGIVTGI--RYNDIDNLLEVLNDELNRGYWDLVWNAPGSTGTRGIFDVIQGTSFNVIVENEDQVE 92 (649)
Q Consensus 15 ~vidNg~l~~tv~k~~G~itsi--~y~G~enll~~~~~~~~~gY~d~~~~~~G~~~~~~~~~~~~gt~~~v~~~~~~~i~ 92 (649)
.+|+|+.+.|+|+..+|.|++| +-+|.+ +... ....++.+.- ..+. .....+..-......++.+++-...
T Consensus 89 ~~leN~~~~v~~~~~tG~i~sl~dk~~g~~-~~~~----~~~~~~~y~~-~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~ 161 (457)
T PF07748_consen 89 NVLENEFYKVTFDPNTGGIKSLYDKKTGRE-YVDQ----DGNDFYIYED-IDGD-YDISPLELQRSGAYLFVEDGPLRSS 161 (457)
T ss_dssp TEEETSSEEEEE-TTTSSEEEEEETTTS-E-EEEE----ECEEEEEEEB-TTSC-TTE-SCCCGSEECCEEEEESSSEEE
T ss_pred EEEEccEEEEEEeCCCCeEEEEEEccCCeE-EEee----cCCceeEecc-cccc-ccccccccccCceEEEEecCCceEE
Confidence 6899999999999877999999 555553 3311 0111221211 1110 0000000001223334456666666
Q ss_pred EEEEEeec-CC------CCCCcccceeeEEEEEecCCceEEEEEEeeccccCCCCCC-cceEEEEecCC
Q 042458 93 ISFTRTWD-SS------LEGKLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNL-GETRIAFKLRK 153 (649)
Q Consensus 93 Vs~~~~~~-~s------~~g~~~~l~l~~~~v~r~G~sgiY~y~~~~~~~~~p~~~l-ge~R~v~Rl~~ 153 (649)
|.+...+. |. .........+.+.+.|.+|++-|..=+.+.+... +- -++|..|..+-
T Consensus 162 i~~~~~~~~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~~----~~~~~l~~~f~t~i 226 (457)
T PF07748_consen 162 IRVEYKFELPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWAE----DHRKELRVRFPTNI 226 (457)
T ss_dssp EEEEEEEEEESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-TT----SCEEEEEEEEEES-
T ss_pred EEEEEEEeccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEeccccc----CCceeEEEEeecCC
Confidence 66555541 00 0011234478999999999999988777753221 11 36777777653
No 68
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=43.52 E-value=75 Score=30.16 Aligned_cols=95 Identities=24% Similarity=0.330 Sum_probs=48.4
Q ss_pred EEEEEecCCCCCccEEEEEEeeccCCceeEEEEcCCCCC--CCCccccccCCCCeeeeeeEEeeeEEEE-EEeeCC-cee
Q 042458 529 QIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTN--RPLFSSGLIGRDNSIARHGIHGLYWLFN-VDVPGA-RLV 604 (649)
Q Consensus 529 ~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~--~p~~~~~~~~~~~~i~R~~~~G~~~~~~-~~ipa~-~L~ 604 (649)
+|++..+. .....|.+||-.|+.+.+.+.|.+++.... .++..|.. +... ..++|..|. ++++.. .+.
T Consensus 41 ~~~v~~~~-~~~~~YrIRiRYAs~~~~~~~i~~~~~~~~~~~~~~~T~~--~~~~-----~~~~y~~F~y~~~~~~~~~~ 112 (143)
T PF03944_consen 41 KIRVTINN-SSSQKYRIRIRYASNSNGTLSISINNSSGNLSFNFPSTMS--NGDN-----LTLNYESFQYVEFPTPFTFS 112 (143)
T ss_dssp EEEEEESS-SSTEEEEEEEEEEESS-EEEEEEETTEEEECEEEE--SSS--TTGG-----CCETGGG-EEEEESSEEEES
T ss_pred EEEEEecC-CCCceEEEEEEEEECCCcEEEEEECCccceeeeecccccc--CCCc-----cccccceeEeeecCceEEec
Confidence 44454332 234679999999998889999999886442 11111221 1111 223233332 223321 122
Q ss_pred eec-cEEEEEeecCCCCCceEEEEEEEEe
Q 042458 605 SGD-NTIFFIQPRSTSPFQGIMYDYIRFE 632 (649)
Q Consensus 605 ~G~-NtI~l~~~~gss~f~~vmyD~IrLe 632 (649)
.+. .+|.|.+...++. ..|.-|-|++.
T Consensus 113 ~~~~~~~~i~i~~~~~~-~~v~IDkIEFI 140 (143)
T PF03944_consen 113 SNQSITITISIQNISSN-GNVYIDKIEFI 140 (143)
T ss_dssp TSEEEEEEEEEESSTTT-S-EEEEEEEEE
T ss_pred CCCceEEEEEEEecCCC-CeEEEEeEEEE
Confidence 222 5677765443332 47899999875
No 69
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=43.48 E-value=44 Score=26.56 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=20.7
Q ss_pred ceeEEEeCCCcceEe--CcccCCceEEEEEEC
Q 042458 379 YQFWTSADEDGYFSI--TAVRAGDYNLYAWVP 408 (649)
Q Consensus 379 yqYwt~td~~G~FtI--~nVrpGtY~L~a~~~ 408 (649)
-.|.+.+|++|.+++ +....|+|++.+.+.
T Consensus 2 ~~~~~t~~~~G~Ws~t~~~~~dG~y~itv~a~ 33 (54)
T PF13754_consen 2 VTYTTTVDSDGNWSFTVPALADGTYTITVTAT 33 (54)
T ss_pred eEEEEEECCCCcEEEeCCCCCCccEEEEEEEE
Confidence 356777888898776 444557787777653
No 70
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=42.74 E-value=18 Score=35.41 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=31.1
Q ss_pred cEEEEEEeeccCCceeEEEEcCCCCCCCCccccccCCCCeeeeeeE--EeeeEEEEEEeeCCceeeeccEEEEEeecC
Q 042458 542 TYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGI--HGLYWLFNVDVPGARLVSGDNTIFFIQPRS 617 (649)
Q Consensus 542 ~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~--~G~~~~~~~~ipa~~L~~G~NtI~l~~~~g 617 (649)
.++|.|+ +-+.+++.|||+.+.. .+..+ .+..+ +-+|. +++| +.+|++|+|+|-+.+..|
T Consensus 5 ~A~l~is----a~g~Y~l~vNG~~V~~----~~l~P-----~~t~y~~~~~Y~--tyDV-t~~L~~G~N~iav~lg~g 66 (172)
T PF08531_consen 5 SARLYIS----ALGRYELYVNGERVGD----GPLAP-----GWTDYDKRVYYQ--TYDV-TPYLRPGENVIAVWLGNG 66 (172)
T ss_dssp --EEEEE----EESEEEEEETTEEEEE----E-------------BTTEEEEE--EEE--TTT--TTEEEEEEEEEE-
T ss_pred EEEEEEE----eCeeEEEEECCEEeeC----Ccccc-----ccccCCCceEEE--EEeC-hHHhCCCCCEEEEEEeCC
Confidence 3455553 5679999999986642 01000 01111 12344 4455 468899999999998654
No 71
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=40.75 E-value=35 Score=31.17 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=29.7
Q ss_pred CCcceEeCcccCCceEEEEEECceeeeeeeeeEEEEcCCceeec
Q 042458 387 EDGYFSITAVRAGDYNLYAWVPGFIGDYRYDVVVNITPGFDIDM 430 (649)
Q Consensus 387 ~~G~FtI~nVrpGtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l 430 (649)
..|.|..-.|+||+|++.+-.....+.-....+|+|.+|++--+
T Consensus 56 ~~g~y~~~~v~pG~h~i~~~~~~~~~~~~~~l~~~~~~G~~yy~ 99 (117)
T PF11008_consen 56 KNGGYFYVEVPPGKHTISAKSEFSSSPGANSLDVTVEAGKTYYV 99 (117)
T ss_pred CCCeEEEEEECCCcEEEEEecCccCCCCccEEEEEEcCCCEEEE
Confidence 45777777899999999995431110011456799999998544
No 72
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=39.73 E-value=63 Score=29.65 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=29.7
Q ss_pred ccEEEecCCCCCCCcccccccceeEEEe---CCCcceEeCcccCCceEEEEEEC
Q 042458 358 GAYVGLAPPGDAGSWQRECKDYQFWTSA---DEDGYFSITAVRAGDYNLYAWVP 408 (649)
Q Consensus 358 ~a~V~L~~~~~~g~wq~~~~~yqYwt~t---d~~G~FtI~nVrpGtY~L~a~~~ 408 (649)
.+.|.|....+ +|.. .+..-....+ +..-.++|++++||+|.+.++.+
T Consensus 12 ~v~v~ly~~~~--~f~~-~~~~~~~~~~~~~~~~~~~~f~~lp~G~YAi~v~hD 62 (112)
T PF09912_consen 12 QVRVALYNSAE--GFEN-KKKALKRVKVPAKGGTVTITFEDLPPGTYAIAVFHD 62 (112)
T ss_pred EEEEEEEcChh--chhh-cccceeEEEEEcCCCcEEEEECCCCCccEEEEEEEe
Confidence 35666655533 3522 2223333333 23458999999999999999976
No 73
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=33.01 E-value=3.3e+02 Score=23.68 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=29.1
Q ss_pred ceEeCcccCCc---eEEEEEE--CceeeeeeeeeEEEEcCCceeec
Q 042458 390 YFSITAVRAGD---YNLYAWV--PGFIGDYRYDVVVNITPGFDIDM 430 (649)
Q Consensus 390 ~FtI~nVrpGt---Y~L~a~~--~G~~G~~~~~~~VtV~aG~t~~l 430 (649)
.|.-+++.+|. |++.+-. +|- ....+.+|.|.||.+.++
T Consensus 30 ~F~T~~L~~G~~y~Y~v~a~~~~dG~--~~t~~~~V~vrAGd~~~v 73 (75)
T TIGR03000 30 TFTTPPLEAGKEYEYTVTAEYDRDGR--ILTRTRTVVVRAGDTVTV 73 (75)
T ss_pred EEECCCCCCCCEEEEEEEEEEecCCc--EEEEEEEEEEcCCceEEe
Confidence 69999999997 6666642 552 245778899999998765
No 74
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=32.44 E-value=2e+02 Score=29.75 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=46.4
Q ss_pred CeEEEEEEEee-ccccccccccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeCcccCCceEEEEE-ECceee
Q 042458 335 RGNVSGRLLVQ-DEYISDDYISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYAW-VPGFIG 412 (649)
Q Consensus 335 RGtVsG~v~~~-d~~~~~~~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~nVrpGtY~L~a~-~~G~~G 412 (649)
-++++|+|... .|.. =.....++-+-|.+.+ |... +.|.+. ...+|.|.-..+=+|+|.|..- .++-.-
T Consensus 21 ~s~l~G~iiD~~tgE~--i~~~~~gv~i~l~e~g----y~~~--~~~~~~-v~qDGtf~n~~lF~G~Yki~~~~G~fp~~ 91 (222)
T PF12866_consen 21 DSTLTGRIIDVYTGEP--IQTDIGGVRIQLYELG----YGDN--TPQDVY-VKQDGTFRNTKLFDGDYKIVPKNGNFPWV 91 (222)
T ss_dssp -EEEEEEEEECCTTEE------STSSEEEEECS-----CCG----SEEEE-B-TTSEEEEEEE-SEEEEEEE-CTSCSBS
T ss_pred CceEEEEEEEeecCCe--eeecCCceEEEEEecc----cccC--CCcceE-EccCCceeeeeEeccceEEEEcCCCCccc
Confidence 48999999542 2210 0011247788886665 5422 445443 6789999888999999999983 232000
Q ss_pred eeeeeeEEEEcCCceeeccceEE
Q 042458 413 DYRYDVVVNITPGFDIDMGDLVY 435 (649)
Q Consensus 413 ~~~~~~~VtV~aG~t~~l~~l~~ 435 (649)
.-..+..|.|+ |.+ ++ ++..
T Consensus 92 ~~~dti~v~i~-G~t-~~-d~eV 111 (222)
T PF12866_consen 92 VPVDTIEVDIK-GNT-TQ-DFEV 111 (222)
T ss_dssp CCE--EEEEES-SCE-EE-EEEE
T ss_pred CCCccEEEEec-Cce-EE-eEEe
Confidence 11233447777 554 33 3544
No 75
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=31.83 E-value=46 Score=34.40 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=21.4
Q ss_pred EEEEECCeEEEEEeCCCeeEEEEEEC
Q 042458 14 HVVLDNGILEVTFSYPGGIVTGIRYN 39 (649)
Q Consensus 14 ~~vidNg~l~~tv~k~~G~itsi~y~ 39 (649)
+|+|+|+.+.++|+..+|.|.++..+
T Consensus 1 ~v~ven~~~~~~~s~~GG~i~~~~Lk 26 (270)
T PF14849_consen 1 RVTVENDLFKVTFSSKGGRIKSVELK 26 (270)
T ss_dssp -EEEE-SS-EEEEETBTTEEEEEEEE
T ss_pred CEEEECCCEEEEEECCCCeEEEEEcC
Confidence 48999999999999999999999765
No 76
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=29.75 E-value=61 Score=30.79 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=21.3
Q ss_pred cccCCceEEEEEECceeeeeeeeeEEEEcC
Q 042458 395 AVRAGDYNLYAWVPGFIGDYRYDVVVNITP 424 (649)
Q Consensus 395 nVrpGtY~L~a~~~G~~G~~~~~~~VtV~a 424 (649)
.++||+|+|.+-+..-.+....+.+++|++
T Consensus 102 ~lk~G~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 102 KLKPGKYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CccCCEEEEEEEEEcCCcEEEEEEEEEECH
Confidence 799999999987654333444566788874
No 77
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=29.33 E-value=44 Score=27.61 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.9
Q ss_pred EEeeCCce-eeeccEEEEEe
Q 042458 596 VDVPGARL-VSGDNTIFFIQ 614 (649)
Q Consensus 596 ~~ipa~~L-~~G~NtI~l~~ 614 (649)
+.|.+++| +.|+|+|+|.-
T Consensus 36 l~i~~~~f~~~G~~~I~I~A 55 (65)
T PF07550_consen 36 LKIKASAFNKDGENTIVIKA 55 (65)
T ss_pred EEEcHHHcCcCCceEEEEEe
Confidence 88899999 78999999983
No 78
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=28.26 E-value=57 Score=28.72 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=24.7
Q ss_pred cCCccEEEecCCCCCCCcccccccceeEEEeC-CCcceEeCcccCC
Q 042458 355 SASGAYVGLAPPGDAGSWQRECKDYQFWTSAD-EDGYFSITAVRAG 399 (649)
Q Consensus 355 pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td-~~G~FtI~nVrpG 399 (649)
.+.++.|.+.. ......|.|.... .+|.|.|.++..|
T Consensus 35 ~~~g~~v~~~~--------~~~~~~Q~W~i~~~~~g~y~I~n~~s~ 72 (105)
T PF14200_consen 35 TANGTNVQQWT--------CNGNDNQQWKIEPVGDGYYRIRNKNSG 72 (105)
T ss_dssp CSTTEBEEEEE--------SSSSGGGEEEEEESTTSEEEEEETSTT
T ss_pred cCCCcEEEEec--------CCCCcCcEEEEEEecCCeEEEEECCCC
Confidence 34566777742 2335788886654 6688999888665
No 79
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=27.34 E-value=70 Score=28.17 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=24.8
Q ss_pred cccCCccEEEecCCCCCCCcccccccceeEEEeCCCcceEeC
Q 042458 353 YISASGAYVGLAPPGDAGSWQRECKDYQFWTSADEDGYFSIT 394 (649)
Q Consensus 353 ~~pa~~a~V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~ 394 (649)
..|..+|.|.|.=.+.++ .......+.||++|.|.|.
T Consensus 18 ~~~l~GA~V~v~C~~~~~-----~~~~~~~~~Td~~G~F~i~ 54 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNG-----GVVFSAEAKTDENGYFSIE 54 (97)
T ss_pred CccCCCCEEEEECCCCCC-----CcEEEEEEEeCCCCEEEEE
Confidence 367788999885332110 0135566889999999996
No 80
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=26.08 E-value=1.3e+02 Score=38.01 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=44.3
Q ss_pred EEEEEEecCCCCCc-cEEEEEEeeccCCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEE-eeeEEEEEEeeCCceee
Q 042458 528 WQIKFELDDVNQSS-TYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIH-GLYWLFNVDVPGARLVS 605 (649)
Q Consensus 528 w~I~F~L~~~~~~~-~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~-G~~~~~~~~ipa~~L~~ 605 (649)
.+=.|++++..... ...|++. +......|.|||+.++ +| |-+.-++|+|. ..|+.
T Consensus 124 Yrr~F~vp~~w~~~~rv~L~Fe---GV~~~a~VwvNG~~VG-------------------~~~g~~~pfefDIT-~~l~~ 180 (1027)
T PRK09525 124 YSLTFTVDESWLQSGQTRIIFD---GVNSAFHLWCNGRWVG-------------------YSQDSRLPAEFDLS-PFLRA 180 (1027)
T ss_pred EEEEEEeChhhcCCCeEEEEEC---eeccEEEEEECCEEEE-------------------eecCCCceEEEECh-hhhcC
Confidence 34458886653222 3445544 2367889999998543 22 55677899996 67789
Q ss_pred eccEEEEEeec
Q 042458 606 GDNTIFFIQPR 616 (649)
Q Consensus 606 G~NtI~l~~~~ 616 (649)
|+|+|.+.|.+
T Consensus 181 G~N~L~V~V~~ 191 (1027)
T PRK09525 181 GENRLAVMVLR 191 (1027)
T ss_pred CccEEEEEEEe
Confidence 99999999954
No 81
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=23.83 E-value=2e+02 Score=33.21 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=56.5
Q ss_pred eeeeEEEEEcCCCCCCCCcccHHHHHHhhhhhccCCCCCCCCC---CCCCCCCCCeEEEEEEEeeccccccccccCCccE
Q 042458 284 VFGPVFVYCNSAFDGDDPLSLWDDAKMQMSVETESWPYSFPAS---DDFPKSDQRGNVSGRLLVQDEYISDDYISASGAY 360 (649)
Q Consensus 284 v~GP~~~y~N~g~~~~~~~~l~~DA~~~~~~E~~~wpysf~~s---~~y~~~s~RGtVsG~v~~~d~~~~~~~~pa~~a~ 360 (649)
++|=--||++.++.-. -+.-+.+.|.+.-.++|=-+ ++|.-..+..+|.=+|.... ...+.
T Consensus 281 ~~g~N~iy~~~~s~~~-------~vei~~~~~~p~p~~~lsVsGL~~eY~I~dG~~~i~ftv~a~g---------~~~vt 344 (478)
T PRK13211 281 VYGKNPIYLKAGSGLE-------RVEIGYDIEAPAPDYELEVSGLAKEYKIGDGAATLDFTVTATG---------DMNVE 344 (478)
T ss_pred ccCccceEEeCCCCce-------EEEEEEEecCCCCCCceEEecCcceeEEcCCcEEEEEEEEecc---------ceEEE
Confidence 4444567888776521 11111222222233444322 88988877777776666542 34566
Q ss_pred EEecCCCCCCCcccccccceeEEEeCCCcceEeC--cccCCceEEEEEE
Q 042458 361 VGLAPPGDAGSWQRECKDYQFWTSADEDGYFSIT--AVRAGDYNLYAWV 407 (649)
Q Consensus 361 V~L~~~~~~g~wq~~~~~yqYwt~td~~G~FtI~--nVrpGtY~L~a~~ 407 (649)
+-|.+... +.++++=-+..|..-.|+|. ++.+|.|+|.+.+
T Consensus 345 a~V~d~~g------~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~ 387 (478)
T PRK13211 345 ATVYNHDG------EALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKA 387 (478)
T ss_pred EEEEcCCC------CeeeeeeEEecCCceeEEEecccCCCceEEEEEEE
Confidence 66643321 23344333444555567665 8999999999875
No 82
>PRK10150 beta-D-glucuronidase; Provisional
Probab=21.74 E-value=1.8e+02 Score=34.19 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=41.5
Q ss_pred EEEEEecCCCCCccEEEEEEeeccCCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEEeeeEEEEEEeeCCceeeecc
Q 042458 529 QIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVSGDN 608 (649)
Q Consensus 529 ~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~N 608 (649)
+=.|++++........|++.. .....+|.|||+.+.. -.|-+..++|+|.. .|+.|+|
T Consensus 70 rr~f~lp~~~~gk~v~L~Feg---v~~~a~V~lNG~~vg~------------------~~~~~~~f~~DIT~-~l~~G~~ 127 (604)
T PRK10150 70 QREVFIPKGWAGQRIVLRFGS---VTHYAKVWVNGQEVME------------------HKGGYTPFEADITP-YVYAGKS 127 (604)
T ss_pred EEEEECCcccCCCEEEEEECc---ccceEEEEECCEEeee------------------EcCCccceEEeCch-hccCCCc
Confidence 345887654322335555542 3446689999985531 12556778999975 5678864
Q ss_pred -EEEEEee
Q 042458 609 -TIFFIQP 615 (649)
Q Consensus 609 -tI~l~~~ 615 (649)
+|.+.+.
T Consensus 128 n~L~V~v~ 135 (604)
T PRK10150 128 VRITVCVN 135 (604)
T ss_pred eEEEEEEe
Confidence 9999984
No 83
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=20.87 E-value=2e+02 Score=34.36 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=46.4
Q ss_pred CCceEEEEEEecCCCCCccEEEEEEeeccCCceeEEEEcCCCCCCCCccccccCCCCeeeeeeEEeeeEEEEEEeeCCce
Q 042458 524 QGSTWQIKFELDDVNQSSTYKLRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARL 603 (649)
Q Consensus 524 ~~~~w~I~F~L~~~~~~~~~tLriala~a~~~~~~V~vN~~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L 603 (649)
++-+|-=.|+.++... .. +|-...-+.=+|.|||+.+++ -|..- |. ..++-||+++|
T Consensus 556 ~P~~w~k~f~~p~g~~--~t----~Ldm~g~GKG~vwVNG~niGR----YW~~~-----------G~--Q~~yhvPr~~L 612 (649)
T KOG0496|consen 556 QPLTWYKTFDIPSGSE--PT----ALDMNGWGKGQVWVNGQNIGR----YWPSF-----------GP--QRTYHVPRSWL 612 (649)
T ss_pred CCeEEEEEecCCCCCC--Ce----EEecCCCcceEEEECCccccc----ccCCC-----------CC--ceEEECcHHHh
Confidence 4567766777655432 11 222234567799999999875 12211 33 56788999999
Q ss_pred eeeccEEEEEeecC
Q 042458 604 VSGDNTIFFIQPRS 617 (649)
Q Consensus 604 ~~G~NtI~l~~~~g 617 (649)
+.+.|.|.+---.+
T Consensus 613 k~~~N~lvvfEee~ 626 (649)
T KOG0496|consen 613 KPSGNLLVVFEEEG 626 (649)
T ss_pred CcCCceEEEEEecc
Confidence 99999987765444
Done!