BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042461
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 164/368 (44%), Gaps = 41/368 (11%)
Query: 31 PLPSTA----LALTYFDTKWFKFPPVQRLFFYRNQTSDTDSIRFNSEIXXXXXXXXXXXX 86
P P +A L LTYFD W F +R+ FY+ S D F I
Sbjct: 12 PSPGSATELTLPLTYFDHVWLAFHRXRRILFYKLPISRPD---FVQTIIPTLKDSLSLTL 68
Query: 87 XXXXXXXGHIMWPE-LEPKPAVYYFPDQKCDGVSFVVAESSDADFDRVSGDGILEAAEYH 145
G++ P+ P + Y + VS + +ES D DF+ + G +++
Sbjct: 69 KYYLPLAGNVACPQDWSGYPELRYV---TGNSVSVIFSES-DXDFNYLIGYHPRNTKDFY 124
Query: 146 PLVPQLSITEDK-----AEVIAIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSWAYLC 200
VPQL+ +D A V+AIQ+TLFPN G SIG + HH DG + F+++WA L
Sbjct: 125 HFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALL- 183
Query: 201 XXXXXXXXXXXXXXTYLPPELTPCFDRTVVKDPDGIDLIYLKHWMSGSSSNRRSLNVMPV 260
+L E P +DR+V+KDP+G+ + S V P
Sbjct: 184 -------NKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVVTP- 235
Query: 261 KPENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKA- 319
+ VR TF + R DI KL++ ++ + + +++SF +TCA+V+ ++K+
Sbjct: 236 ------PDKVRGTFIITRHDIGKLKN----LVLTRRPKLTHVTSFTVTCAYVWTCIIKSE 285
Query: 320 ----RDVEANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVA 375
+++ N F DCR++ +PP+P +YFGN G + + GF
Sbjct: 286 AATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAV 345
Query: 376 HKLSDLIK 383
+ + I+
Sbjct: 346 ELIGEAIR 353
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 168/364 (46%), Gaps = 34/364 (9%)
Query: 23 STASTNDNPLPSTALALTYFDTKWFKFPPVQRLFFYRNQTSDTDSIRFNSEIXXXXXXXX 82
S S + L +L LT+FD W + PP+ LFFY + + +F +
Sbjct: 13 SQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRS---QFTETVVPNIKHSL 69
Query: 83 XXXXXXXXXXXGH-IMWPELEPKPAVYYFPDQKCDGVSFVVAESSDADFDRVSGDGILEA 141
G +++P KP + Y + D V+ AE + D + ++G+
Sbjct: 70 SITLKHFYPFVGKLVVYPAPTKKPEICYV---EGDSVAVTFAEC-NLDLNELTGNHPRNC 125
Query: 142 AEYHPLVPQLSITEDKAEVI-----AIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSW 196
+++ LVP L + ++ I ++Q+TLFPNQG +IG++ HH + D + F+K+W
Sbjct: 126 DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAW 185
Query: 197 AYLCXXXXXXXXXXXXXXTYLPPELTPCFDRTVVKDPDGIDLIYLKHWMSGSSSNRRSLN 256
+ ++L P +DR ++K P +D YLK S N +
Sbjct: 186 TSIA-------RSGNNDESFLANGTRPLYDR-IIKYP-MLDEAYLKR-AKVESFNEDYVT 235
Query: 257 VMPVKPENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWL 316
P S+ +R TF L R IN+L+D+V L + +Y+SSF + CA+++ +
Sbjct: 236 QSLAGP----SDKLRATFILTRAVINQLKDRVLAQLPTL----EYVSSFTVACAYIWSCI 287
Query: 317 VKARDVEANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAH 376
K+R+ + F D R+R+ PPIP YFGNC GG AK + + + GF A
Sbjct: 288 AKSRN---DKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAK 344
Query: 377 KLSD 380
+ +
Sbjct: 345 LIGE 348
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/364 (27%), Positives = 167/364 (45%), Gaps = 34/364 (9%)
Query: 23 STASTNDNPLPSTALALTYFDTKWFKFPPVQRLFFYRNQTSDTDSIRFNSEIXXXXXXXX 82
S S + L +L LT+FD W + PP+ LFFY + + +F +
Sbjct: 13 SQVSPPPDTLGDKSLQLTFFDFFWLRSPPINNLFFYELPITRS---QFTETVVPNIKHSL 69
Query: 83 XXXXXXXXXXXGH-IMWPELEPKPAVYYFPDQKCDGVSFVVAESSDADFDRVSGDGILEA 141
G +++P KP + Y + D V+ AE + D + ++G+
Sbjct: 70 SITLKHFYPFVGKLVVYPAPTKKPEICYV---EGDSVAVTFAEC-NLDLNELTGNHPRNC 125
Query: 142 AEYHPLVPQLSITEDKAEVI-----AIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSW 196
+++ LVP L + ++ I ++Q+TLFPNQG +IG++ HH + D + F+K+W
Sbjct: 126 DKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAW 185
Query: 197 AYLCXXXXXXXXXXXXXXTYLPPELTPCFDRTVVKDPDGIDLIYLKHWMSGSSSNRRSLN 256
+ ++L P +DR ++K P +D YLK S N +
Sbjct: 186 TSIA-------RSGNNDESFLANGTRPLYDR-IIKYPX-LDEAYLKR-AKVESFNEDYVT 235
Query: 257 VMPVKPENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWL 316
P S+ +R TF L R IN+L+D+V L + +Y+SSF + CA+++ +
Sbjct: 236 QSLAGP----SDKLRATFILTRAVINQLKDRVLAQLPT----LEYVSSFTVACAYIWSCI 287
Query: 317 VKARDVEANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAH 376
K+R+ + F D R+R PPIP YFGNC GG AK + + + GF A
Sbjct: 288 AKSRN---DKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAK 344
Query: 377 KLSD 380
+ +
Sbjct: 345 LIGE 348
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 106/247 (42%), Gaps = 43/247 (17%)
Query: 116 DGVSFVVAESSDA--DFDRVSGDGILEAAEYHPLVPQLSITEDKAE--VIAIQITLFPNQ 171
+GV FV AES DF GD E L+P + ++ + ++ +Q+T F
Sbjct: 94 EGVLFVEAESDGVVDDF----GD-FAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKXG 148
Query: 172 GFSIGVSAHHAVLDGKSTTLFIKSWAYLCXXXXXXXXXXXXXXTYLPPELTPCFDRTVVK 231
G S+GV H DG S FI SW+ + L L P DRT+++
Sbjct: 149 GVSLGVGMRHHAADGFSGLHFINSWSDMARG--------------LDVTLPPFIDRTLLR 194
Query: 232 --DPDGIDLIYLKHWMSGSSSNRRSLNVMPVKPENYYSNLVRMT----FELNREDINKLR 285
DP ++++ + + V P+ S+ V T F+L RE I+ L+
Sbjct: 195 ARDPPQPQFQHIEY---------QPPPALAVSPQTAASDSVPETAVSIFKLTREQISALK 245
Query: 286 DKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKARDVEANTTVRFVITTDCRSRLDPPIP 345
K E G SS+ + HV+ KAR +E + + I TD R+RL P +P
Sbjct: 246 AKSKE-----DGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLP 300
Query: 346 ANYFGNC 352
YFGN
Sbjct: 301 PGYFGNV 307
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 106/247 (42%), Gaps = 43/247 (17%)
Query: 116 DGVSFVVAESSDA--DFDRVSGDGILEAAEYHPLVPQLSITEDKAE--VIAIQITLFPNQ 171
+GV FV AES DF GD E L+P + ++ + ++ +Q+T F
Sbjct: 94 EGVLFVEAESDGVVDDF----GD-FAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCG 148
Query: 172 GFSIGVSAHHAVLDGKSTTLFIKSWAYLCXXXXXXXXXXXXXXTYLPPELTPCFDRTVVK 231
G S+GV H DG S FI SW+ + L L P DRT+++
Sbjct: 149 GVSLGVGMRHHAADGFSGLHFINSWSDMARG--------------LDVTLPPFIDRTLLR 194
Query: 232 --DPDGIDLIYLKHWMSGSSSNRRSLNVMPVKPENYYSNLVRMT----FELNREDINKLR 285
DP ++++ + + V P+ S+ V T F+L RE I+ L+
Sbjct: 195 ARDPPQPQFQHIEY---------QPPPALAVSPQTAASDSVPETAVSIFKLTREQISALK 245
Query: 286 DKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKARDVEANTTVRFVITTDCRSRLDPPIP 345
K E G SS+ + HV+ KAR +E + + I TD R+RL P +P
Sbjct: 246 AKSKE-----DGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLP 300
Query: 346 ANYFGNC 352
YFGN
Sbjct: 301 PGYFGNV 307
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 106/247 (42%), Gaps = 43/247 (17%)
Query: 116 DGVSFVVAESSDA--DFDRVSGDGILEAAEYHPLVPQLSITEDKAE--VIAIQITLFPNQ 171
+GV FV AES DF GD E L+P + ++ + ++ +Q+T F
Sbjct: 91 EGVLFVEAESDGVVDDF----GD-FAPTLELRRLIPAVDYSQGISSYALLVLQVTYFKCG 145
Query: 172 GFSIGVSAHHAVLDGKSTTLFIKSWAYLCXXXXXXXXXXXXXXTYLPPELTPCFDRTVVK 231
G S+GV H DG S FI SW+ + L L P DRT+++
Sbjct: 146 GVSLGVGMRHHAADGFSGLHFINSWSDMARG--------------LDVTLPPFIDRTLLR 191
Query: 232 --DPDGIDLIYLKHWMSGSSSNRRSLNVMPVKPENYYSNLVRMT----FELNREDINKLR 285
DP ++++ + + V P+ S+ V T F+L RE I+ L+
Sbjct: 192 ARDPPQPQFQHIEY---------QPPPALKVSPQTAKSDSVPETAVSIFKLTREQISALK 242
Query: 286 DKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKARDVEANTTVRFVITTDCRSRLDPPIP 345
K E G SS+ + HV+ KAR +E + + I TD R+RL P +P
Sbjct: 243 AKSKE-----DGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLP 297
Query: 346 ANYFGNC 352
YFGN
Sbjct: 298 PGYFGNV 304
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 79/215 (36%), Gaps = 43/215 (20%)
Query: 150 QLSITEDKAEVIAIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSWAYLCXXXXXXXXX 209
++ + ED +A++I+ F G +IGV+ H + D S F+ +W C
Sbjct: 131 KIEVNEDVP--LAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEI--- 185
Query: 210 XXXXXTYLPPELTPCFDRTVVKDPDGIDLIYLKHWMSGSSSNRRSLNVMPVKPENYYSNL 269
+ P FD P N S ++P + N+
Sbjct: 186 -----------VLPNFDLAARHFP--------------PVDNTPSPELVPDE------NV 214
Query: 270 VRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKARDVEANTTVR 329
V F ++E I LR + S+ + S + A+++ ++ + +
Sbjct: 215 VMKRFVFDKEKIGALRAQA-----SSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNK 269
Query: 330 FVI--TTDCRSRLDPPIPANYFGNCTGGEFGEAKA 362
FV+ + RSR++PP+P GN F A
Sbjct: 270 FVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDA 304
>pdb|2OWN|A Chain A, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
pdb|2OWN|B Chain B, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
Length = 262
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 230 VKDPDGIDLIYLKH-WMSGSSSNRRSLNVMPVKPENYYSNLVRMTFELNR 278
++D DG L Y+ W+ S + RR + ++P Y S +V+ L R
Sbjct: 102 IRDADGQQLAYITSIWVXXSQTTRRIVKILPELVAPYQSEVVKRIPRLPR 151
>pdb|2PP3|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
pdb|2PP3|B Chain B, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
pdb|2PP3|C Chain C, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
Length = 398
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 226 DRTVVKDPDGIDLIYLKHWMSGSSSNRRSLNVMPVKP 262
D + +DP+ ID IY K +G+S R + V + P
Sbjct: 98 DNLLGEDPNDIDKIYTKLLWAGASVGRSGMAVQAISP 134
>pdb|2PP0|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP0|B Chain B, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP0|C Chain C, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP1|A Chain A, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|B Chain B, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|C Chain C, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|D Chain D, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|E Chain E, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|F Chain F, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
Length = 398
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 226 DRTVVKDPDGIDLIYLKHWMSGSSSNRRSLNVMPVKP 262
D + +DP+ ID IY K +G+S R + V + P
Sbjct: 98 DNLLGEDPNDIDKIYTKLLWAGASVGRSGMAVQAISP 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,176,426
Number of Sequences: 62578
Number of extensions: 429544
Number of successful extensions: 961
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 11
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)