Query         042461
Match_columns 394
No_of_seqs    176 out of 1206
Neff          8.6 
Searched_HMMs 29240
Date          Mon Mar 25 10:51:07 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042461hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 4g22_A Hydroxycinnamoyl-COA sh 100.0 3.1E-65 1.1E-69  511.0  33.6  340    3-392     2-346 (439)
  2 2xr7_A Malonyltransferase; xen 100.0 5.7E-63 1.9E-67  496.8  28.5  348    9-392     2-365 (453)
  3 2e1v_A Acyl transferase; BAHD  100.0 3.4E-62 1.2E-66  491.2  32.1  350    4-389     1-357 (454)
  4 2bgh_A Vinorine synthase; VS,  100.0 3.9E-59 1.3E-63  464.4  27.4  320    7-392     3-331 (421)
  5 2rkv_A Trichothecene 3-O-acety 100.0 8.2E-50 2.8E-54  400.9  22.5  317   36-392     4-349 (451)
  6 1q9j_A PAPA5, polyketide synth  99.1 2.5E-08 8.4E-13   97.7  24.1  299   34-385     5-314 (422)
  7 2jgp_A Tyrocidine synthetase 3  98.6 1.1E-05 3.6E-10   81.4  23.6  261   74-385   132-401 (520)
  8 4hvm_A Tlmii; PSI-biology, mid  98.5 6.5E-06 2.2E-10   82.4  18.5  289   34-385    11-328 (493)
  9 1l5a_A Amide synthase, VIBH; n  98.4 2.3E-05   8E-10   76.8  21.3  260   74-385    34-305 (436)
 10 2xhg_A Tyrocidine synthetase A  98.4 0.00017 5.7E-09   71.3  27.3  305   34-385    15-336 (466)
 11 2vsq_A Surfactin synthetase su  98.2 7.6E-05 2.6E-09   83.6  22.1  271   74-385    48-328 (1304)
 12 3fot_A 15-O-acetyltransferase;  98.2  0.0001 3.5E-09   74.2  20.0  294   72-391    72-407 (519)
 13 3cla_A Type III chloramphenico  76.9     1.6 5.5E-05   38.1   3.3   45  157-201   163-209 (213)
 14 2i9d_A Chloramphenicol acetylt  75.7     1.8 6.1E-05   38.0   3.3   44  157-200   171-216 (217)
 15 1q23_A Chloramphenicol acetylt  75.4     1.8 6.3E-05   37.9   3.3   44  158-201   168-213 (219)
 16 3b8k_A PDCE2;, dihydrolipoylly  73.7     2.2 7.4E-05   38.0   3.4   29  173-201   204-232 (239)
 17 1dpb_A Dihydrolipoyl-transacet  72.4     2.4 8.1E-05   37.8   3.3   29  173-201   208-236 (243)
 18 1scz_A E2, dihydrolipoamide su  72.2     2.4 8.3E-05   37.5   3.3   29  173-201   196-224 (233)
 19 3rqc_A Probable lipoamide acyl  72.1     2.1 7.2E-05   37.7   2.8   29  173-201   187-215 (224)
 20 2ii3_A Lipoamide acyltransfera  71.1     2.6   9E-05   38.0   3.3   29  173-201   224-252 (262)
 21 2kl8_A OR15; structural genomi  67.6     5.1 0.00017   27.4   3.3   38   73-110    10-47  (85)
 22 3mae_A 2-oxoisovalerate dehydr  66.0     3.9 0.00013   36.7   3.3   29  173-201   210-238 (256)
 23 3l60_A Branched-chain alpha-ke  64.6     4.3 0.00015   36.3   3.3   30  173-202   205-234 (250)
 24 4hhu_A OR280; engineered prote  54.1      16 0.00054   28.2   4.3   38   73-110    92-129 (170)
 25 2xl1_A Arginine attenuator pep  53.4      11 0.00039   20.0   2.3   20  299-318     5-24  (26)
 26 4hhu_A OR280; engineered prote  50.9      16 0.00054   28.2   3.9   96   74-202    12-107 (170)
 27 3dva_I Dihydrolipoyllysine-res  47.0       4 0.00014   39.6   0.0   29  173-201   391-419 (428)
 28 1x93_A Hypothetical protein HP  42.4      54  0.0019   21.0   4.7   23  271-293     3-25  (55)
 29 2k1o_A Putative; repressor, tr  29.3 1.3E+02  0.0043   20.0   5.6   42  267-321    13-54  (66)
 30 2xt6_A 2-oxoglutarate decarbox  23.4      43  0.0015   36.6   3.1   30  173-202   192-221 (1113)

No 1  
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=100.00  E-value=3.1e-65  Score=510.98  Aligned_cols=340  Identities=27%  Similarity=0.368  Sum_probs=274.1

Q ss_pred             CCCCcceEEeEEEEeeCCCCCCCCCCCCCCCCceeecCcccccccccCCccEEEEEeCCCCCCCCCcchhchHHHHHHHH
Q 042461            3 IISSRCVKIREVTRVTPFFDSTASTNDNPLPSTALALTYFDTKWFKFPPVQRLFFYRNQTSDTDSIRFNSEILPQLKHSL   82 (394)
Q Consensus         3 ~~~~~~v~v~~~~~V~P~~~~~~~~~~~~~~~~~~~LS~lD~~~~~~~y~~~~~~y~~~~~~~~~~~f~~~~~~~Lk~sL   82 (394)
                      .|++|+|+|.++++|+|+.|||         .+.++||+||+++.. .|++.+|||+.++   .. .  ...+++||+||
T Consensus         2 ~m~~~~V~i~~~~~V~P~~~tp---------~~~~~LS~lD~~~~~-~~~~~~~~y~~~~---~~-~--~~~~~~Lk~sL   65 (439)
T 4g22_A            2 AMGSMKIEVKESTMVRPAQETP---------GRNLWNSNVDLVVPN-FHTPSVYFYRPTG---SS-N--FFDAKVLKDAL   65 (439)
T ss_dssp             ----CCEEEEEEEEECCSSCCC---------CCEECCCHHHHSCCT-TCCCEEEEECCCS---CT-T--TTCHHHHHHHH
T ss_pred             CCCceEEEEeeeEEEeCCCCCC---------CCeecCChhHhCccc-cceeeEEEEcCCC---Cc-c--ccHHHHHHHHH
Confidence            4888999999999999999886         678999999998654 5899999998754   21 1  24689999999


Q ss_pred             HHHhhhhcCCCceEecCCCCCCcEEEEcCCCCCCCeEEEEEeecCCccccccCCCCccccccCCCCCCCCCCC--CCCce
Q 042461           83 SLALLHYLPLAGHIMWPELEPKPAVYYFPDQKCDGVSFVVAESSDADFDRVSGDGILEAAEYHPLVPQLSITE--DKAEV  160 (394)
Q Consensus        83 ~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~~~~gv~f~~a~~~~~~~~~l~~~~p~~~~~~~~l~p~~~~~~--~~~Pl  160 (394)
                      +++|++||||||||+.+++ |+++|+|+ +   +||.|++++ ++.+++|+.. .. +...++.|+|..+...  .+.|+
T Consensus        66 s~~L~~f~plAGRl~~~~~-g~~~i~c~-~---~Gv~fv~A~-~d~~l~~l~~-~~-p~~~~~~l~p~~~~~~~~~~~pl  137 (439)
T 4g22_A           66 SRALVPFYPMAGRLKRDED-GRIEIECN-G---EGVLFVEAE-SDGVVDDFGD-FA-PTLELRRLIPAVDYSQGISSYAL  137 (439)
T ss_dssp             HHHTTTTGGGGCEEEECTT-SCEEEECC-C---CCEEEEEEE-ESSCGGGGTT-CC-CCGGGGGGSCCCCTTSCTTSSCS
T ss_pred             HHHHhhccccceeeeeCCC-CCEEEEEC-C---CCCEEEEEE-cCCcHHHhcC-CC-CCHHHHhcCCCCCcccccccCce
Confidence            9999999999999998876 89999997 6   899999999 9999999953 22 3345667888765432  46799


Q ss_pred             EEEEEEEeCCCceEEEEeeeeeeccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCcccccccC--CCCCcch
Q 042461          161 IAIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSWAYLCKQLKLQQQQQQQEQTYLPPELTPCFDRTVVK--DPDGIDL  238 (394)
Q Consensus       161 l~vQvt~~~~GG~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~g~~~~~~~~~~~~~~~~~~~P~~dr~~l~--~p~~~~~  238 (394)
                      +.+|||+|+|||++||+++||.++||.|+++||++||++|| |   ..          ....|++||+.+.  +|+....
T Consensus       138 l~vQvT~f~cGG~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r-g---~~----------~~~~P~~dr~~l~~~~pp~~~~  203 (439)
T 4g22_A          138 LVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR-G---LD----------VTLPPFIDRTLLRARDPPQPQF  203 (439)
T ss_dssp             EEEEEEECTTSCEEEEEEECTTTCCHHHHHHHHHHHHHHHT-T---CC----------CSSCCBCCGGGGCCCSSCCCSS
T ss_pred             eEEEEEEecCCCEEEEEEeeeccCcHHHHHHHHHHHHHHhC-C---CC----------CCCCCccccccccCCCCCCCCc
Confidence            99999999999999999999999999999999999999999 6   32          1357899999875  3333221


Q ss_pred             HhHhhhhcCCCCCCcccccCCC-CCCCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHHHHHHH
Q 042461          239 IYLKHWMSGSSSNRRSLNVMPV-KPENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWLV  317 (394)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~St~d~L~AllW~~~~  317 (394)
                      . +.+|.  ..+   ....... .+..+..++++++|+|++++|++||+.+.++..     ..++|+||+|+||+|+|++
T Consensus       204 ~-~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~f~fs~~~i~~LK~~a~~~~~-----~~~~St~dal~A~iWr~~~  272 (439)
T 4g22_A          204 Q-HIEYQ--PPP---ALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKEDGN-----TISYSSYEMLAGHVWRCAC  272 (439)
T ss_dssp             C-CGGGS--CCC------------------CEEEEEEEECHHHHHHHHHGGGGGGC-----CCCCCHHHHHHHHHHHHHH
T ss_pred             C-ccccc--CCC---CCcccccccccCCcccceEEEEEECHHHHHHHHHHhhccCC-----CCCccHHHHHHHHHHHHHH
Confidence            1 12332  000   0000000 000011468899999999999999999986542     3579999999999999999


Q ss_pred             hhccCCCCceEEEEEEeecCCCCCCCCCCCCcccccccceeeeecccccccCcHHHHHHHHHHHHhhhhhhhhcc
Q 042461          318 KARDVEANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDLIKGIKRCCSRI  392 (394)
Q Consensus       318 rAr~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~ai~~v~~~~~r~  392 (394)
                      |||++++++.+++.++||+|+|++||+|++||||++..+.+.++++||.+ ++|+++|.+||++++++|+||+|.
T Consensus       273 rAr~~~~~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~~~~~~el~~-~~L~~~A~~Ir~ai~~~~~e~~~~  346 (439)
T 4g22_A          273 KARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEF-KPVWYAASKIHDALARMDNDYLRS  346 (439)
T ss_dssp             HHTTCCTTCEEEEEEEEECTTTSSSCCCTTBCSCCEEEECCEEEHHHHHH-SCHHHHHHHHHHHHHTCSHHHHHH
T ss_pred             HhcCCCCCCcEEEEEEEcccCCCCCCCCCCcccceeehhhcceEHHHHhh-CcHHHHHHHHHHHHHhhCHHHHHH
Confidence            99998888999999999999999999999999999999999999999986 899999999999999999999874


No 2  
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=100.00  E-value=5.7e-63  Score=496.76  Aligned_cols=348  Identities=32%  Similarity=0.569  Sum_probs=277.0

Q ss_pred             eEEeEEEEeeCCCCCCCCCCCCCCCCceeecCcccccccccCCccEEEEEeCCCCCCCCCcchhchHHHHHHHHHHHhhh
Q 042461            9 VKIREVTRVTPFFDSTASTNDNPLPSTALALTYFDTKWFKFPPVQRLFFYRNQTSDTDSIRFNSEILPQLKHSLSLALLH   88 (394)
Q Consensus         9 v~v~~~~~V~P~~~~~~~~~~~~~~~~~~~LS~lD~~~~~~~y~~~~~~y~~~~~~~~~~~f~~~~~~~Lk~sL~~~L~~   88 (394)
                      |+|+++++|+|+.|++        +.+.++||+||+++.+++|++.+|||+.++   ..+.|.+.++++||+||+++|++
T Consensus         2 v~v~~~~~V~P~~~~~--------~~~~~~LS~lD~~~~~~~~~~~~~~y~~~~---~~~~~~~~~~~~Lk~sLs~~L~~   70 (453)
T 2xr7_A            2 ASVIEQCQVVPSPGSA--------TELTLPLTYFDHVWLAFHRMRRILFYKLPI---SRPDFVQTIIPTLKDSLSLTLKY   70 (453)
T ss_dssp             CEEEEESCCCCCTTCC--------SEEEEECCHHHHGGGGSCCEEEEEEEECCC---CSHHHHHTHHHHHHHHHHHHHTT
T ss_pred             eEEEEEEEecCCCCCC--------CCceECCCHHHhhhhhcCCccEEEEEeCCC---CCchhHHHHHHHHHHHHHHHhhh
Confidence            8999999999998754        378999999999866666899999999764   21112256799999999999999


Q ss_pred             hcCCCceEecCCC-CCCcEEEEcCCCCCCCeEEEEEeecCCccccccCCCCccccccCCCCCCCCCCCCC-----CceEE
Q 042461           89 YLPLAGHIMWPEL-EPKPAVYYFPDQKCDGVSFVVAESSDADFDRVSGDGILEAAEYHPLVPQLSITEDK-----AEVIA  162 (394)
Q Consensus        89 ~p~LaGrl~~~~~-~g~~~i~~~~~~~~~gv~f~~a~~~~~~~~~l~~~~p~~~~~~~~l~p~~~~~~~~-----~Pll~  162 (394)
                      ||||||||+.+++ +|+++|+|+++   +||.|++++ ++.+++++..+.+.+...++.|+|..+.....     .|++.
T Consensus        71 ~~plAGRl~~~~~~~g~~~i~c~~~---~gv~fv~A~-~~~~l~~l~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~pll~  146 (453)
T 2xr7_A           71 YLPLAGNVACPQDWSGYPELRYVTG---NSVSVIFSE-SDMDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLA  146 (453)
T ss_dssp             SGGGGSCCEEESSTTCCCEEEEETT---CCCEEEEEE-CCSCHHHHTCSSCCCGGGGGGGSCCCCCCEEETTEEECCCEE
T ss_pred             ccccCeeEEccCCCCCCEEEEecCC---CceEEEEEe-cCCCHHHhhccCCCChhhhhcCCCCCCCcccccccccCCeEE
Confidence            9999999988652 48999999865   799999999 99999999654433445566788876533223     89999


Q ss_pred             EEEEEeCCCceEEEEeeeeeeccchhHHHHHHHHHHHHhhhhhhh-hhhhhccccCCCCCCCcccccccCCCCCcchHhH
Q 042461          163 IQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSWAYLCKQLKLQQ-QQQQQEQTYLPPELTPCFDRTVVKDPDGIDLIYL  241 (394)
Q Consensus       163 vQvt~~~~GG~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~g~~~~-~~~~~~~~~~~~~~~P~~dr~~l~~p~~~~~~~~  241 (394)
                      +|||+|+|||++||+++||+++||.|+++||++||++||.|   . .      ...++.+.|.+||+.+.+|..+...+.
T Consensus       147 vQvT~f~cGG~~lg~~~~H~v~Dg~~~~~Fl~~wa~~~r~G---~~~------~~~~~~~~P~~dr~~l~~p~~~~~~~~  217 (453)
T 2xr7_A          147 IQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFG---GDE------QFLANEFIPFYDRSVIKDPNGVGMSIW  217 (453)
T ss_dssp             EEEEEETTTEEEEEEEECTTTCCSHHHHHHHHHHHHHHHTT---TCG------GGSCGGGSCBCCCSSSCCSSCHHHHTT
T ss_pred             EEEEEccCCcEEEEEeeeeeeechhHHHHHHHHHHHHhhcC---CCc------ccCCCCCCCccccccccCCCCcchHHH
Confidence            99999999999999999999999999999999999999943   2 1      002234578999998876654432222


Q ss_pred             hhhhcCCCCCCccc-ccCCCCCCCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHHHHHHHhhc
Q 042461          242 KHWMSGSSSNRRSL-NVMPVKPENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKAR  320 (394)
Q Consensus       242 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~St~d~L~AllW~~~~rAr  320 (394)
                      ..+..    . ..+ ....  ...+ .+.++++|+|++++|++||+.+.+...    +..++|+||+|+||+|+|++|||
T Consensus       218 ~~~~~----~-~~~~~~~~--~~~~-~~~~~~~f~f~~~~i~~Lk~~a~~~~~----~~~~~St~~~l~A~lW~~~~~Ar  285 (453)
T 2xr7_A          218 NEMKK----Y-KHMMKMSD--VVTP-PDKVRGTFIITRHDIGKLKNLVLTRRP----KLTHVTSFTVTCAYVWTCIIKSE  285 (453)
T ss_dssp             TTGGG----C-TTTSCCSC--CCCC-CSCCCEEEEECHHHHHHHHHHHHHHSC----CCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             Hhccc----c-CCcccccc--ccCC-CCceEEEEEECHHHHHHHHHHHhhcCC----CCCcccHHHHHHHHHHHHHHHHh
Confidence            11210    0 010 0000  0012 456789999999999999999986542    12589999999999999999999


Q ss_pred             cC-----CCCceEEEEEEeecCCCCCCCCCCCCcccccccceeeeecccccccCcHHHHHHHHHHHHhh--hhhh-hhcc
Q 042461          321 DV-----EANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDLIKG--IKRC-CSRI  392 (394)
Q Consensus       321 ~~-----~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~ai~~--v~~~-~~r~  392 (394)
                      ..     ++++.+++.++||+|+|++||+|++||||++..+.+.++++||.++++|+.+|.+||+++.+  ++++ |+|.
T Consensus       286 ~~~~~~~~~~~~~~l~~~vd~R~rl~pplP~~Y~GN~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~~~~~e~~~~~  365 (453)
T 2xr7_A          286 AATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSG  365 (453)
T ss_dssp             HHTTCCCCTTSEEEEEEECCTTSCSSSCCCTTBCSCCCCEEEEEEEHHHHTSSSHHHHHHHHHHHHHTTSSSCHHHHHSS
T ss_pred             ccccccCCCCcceEEEEEecccccCCCCCCcccccceeeeeeeeeeHHHhcCcchHHHHHHHHHHHHHhhccCCccchhh
Confidence            86     56789999999999999999999999999999999999999998447999999999999999  5777 8763


No 3  
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=100.00  E-value=3.4e-62  Score=491.18  Aligned_cols=350  Identities=31%  Similarity=0.590  Sum_probs=269.3

Q ss_pred             CCC-cceEEeEEEEeeCCCCCCCCCCCCCCCCceeecCcccccccccCCccEEEEEeCCCCCCCCCcchhchHHHHHHHH
Q 042461            4 ISS-RCVKIREVTRVTPFFDSTASTNDNPLPSTALALTYFDTKWFKFPPVQRLFFYRNQTSDTDSIRFNSEILPQLKHSL   82 (394)
Q Consensus         4 ~~~-~~v~v~~~~~V~P~~~~~~~~~~~~~~~~~~~LS~lD~~~~~~~y~~~~~~y~~~~~~~~~~~f~~~~~~~Lk~sL   82 (394)
                      |++ .+|+|+++++|+|+.|++        +.+.++||+||+++..++|++.+|||+.++   ..+.|.+.++++||+||
T Consensus         1 ~~~~~~v~v~~~~~V~P~~~~~--------~~~~~~LS~lD~~~~~~~~~~~~~~y~~~~---~~~~~~~~~~~~Lk~sL   69 (454)
T 2e1v_A            1 MASLPILTVLEQSQVSPPPDTL--------GDKSLQLTFFDFFWLRSPPINNLFFYELPI---TRSQFTETVVPNIKHSL   69 (454)
T ss_dssp             -----CEEEEEEEEECCCTTSC--------CCEEEECCHHHHTTTTCCCEEEEEEEECCC---CHHHHHHTHHHHHHHHH
T ss_pred             CCCCceEEEEEEEEEeCCCCCC--------CCceecCchHHhhhhccCCccEEEEEeCCC---CcchhhHHHHHHHHHHH
Confidence            454 889999999999998754        378999999999866666899999999754   21112246799999999


Q ss_pred             HHHhhhhcCCCceEe-cCCCCCCcEEEEcCCCCCCCeEEEEEeecCCccccccCCCCccccccCCCCCCCCCCC-----C
Q 042461           83 SLALLHYLPLAGHIM-WPELEPKPAVYYFPDQKCDGVSFVVAESSDADFDRVSGDGILEAAEYHPLVPQLSITE-----D  156 (394)
Q Consensus        83 ~~~L~~~p~LaGrl~-~~~~~g~~~i~~~~~~~~~gv~f~~a~~~~~~~~~l~~~~p~~~~~~~~l~p~~~~~~-----~  156 (394)
                      +++|++||||||||+ .++++|+++|+|+++   +||.|++++ ++.+++++.+..+.+...++.|+|..+...     .
T Consensus        70 s~~L~~~~plAGRl~~~~~~~g~~~i~c~~~---~gv~fv~A~-~~~~l~~l~~~~~~~~~~~~~l~p~~~~~~~~~~~~  145 (454)
T 2e1v_A           70 SITLKHFYPFVGKLVVYPAPTKKPEICYVEG---DSVAVTFAE-CNLDLNELTGNHPRNCDKFYDLVPILGESTRLSDCI  145 (454)
T ss_dssp             HHHHTTCGGGGSEEEECSSSSSCCEEEECTT---CCEEEEEEE-ECSCGGGTSSSSCEEGGGGGGGSCCCCCCEECSSCE
T ss_pred             HHHhhhccccceeeeeccCCCCCEEEEECCC---CcEEEEEEE-eCCCHHHhcCCCCCcchhhhcCCCCCCCcccccccc
Confidence            999999999999998 653458999999866   799999999 999999996544334445667888765322     2


Q ss_pred             CCceEEEEEEEeCCCceEEEEeeeeeeccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCcccccccCCCCCc
Q 042461          157 KAEVIAIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSWAYLCKQLKLQQQQQQQEQTYLPPELTPCFDRTVVKDPDGI  236 (394)
Q Consensus       157 ~~Pll~vQvt~~~~GG~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~g~~~~~~~~~~~~~~~~~~~P~~dr~~l~~p~~~  236 (394)
                      +.|++.+|||+|+|||++||+++||+++||.|+++||++||++||.|   .++  .  ...++.+.|.+|| .+.+|. +
T Consensus       146 ~~pll~vQvT~f~cgG~~lg~~~~H~v~Dg~~~~~Fl~awa~~~r~g---~~~--~--~~~~~~~~P~~dr-~l~~p~-~  216 (454)
T 2e1v_A          146 KIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSG---NND--E--SFLANGTRPLYDR-IIKYPM-L  216 (454)
T ss_dssp             EEECEEEEEEEETTTEEEEEEEECGGGCCHHHHHHHHHHHHHHHHTT---SCC--H--HHHHHSCCCBCCC-CCCCHH-H
T ss_pred             cCceEEEEEEEecCCcEEEEEEeeeeecchhHHHHHHHHHHHHhccC---CCc--c--ccCCCCCCCcccc-cCCCCC-c
Confidence            34999999999999999999999999999999999999999999944   210  0  0001134689999 776543 3


Q ss_pred             chHhHhhhhcCCCCCCcccccCCCCCCCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHHHHHH
Q 042461          237 DLIYLKHWMSGSSSNRRSLNVMPVKPENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWL  316 (394)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~St~d~L~AllW~~~  316 (394)
                      ...+...+..  ...  ...+.+.....+ .+.++++|+|++++|++||+.+.+...    +..++|+||+|+||+|+|+
T Consensus       217 ~~~~~~~~~~--~~~--~~~~~~~~~~~~-~~~~~~~f~f~~~~i~~LK~~a~~~~~----~~~~~St~d~l~A~lWr~~  287 (454)
T 2e1v_A          217 DEAYLKRAKV--ESF--NEDYVTQSLAGP-SDKLRATFILTRAVINQLKDRVLAQLP----TLEYVSSFTVACAYIWSCI  287 (454)
T ss_dssp             HHHHHHHTTC--TTH--HHHCCCCCCCCC-CCEEEEEEEECHHHHHHHHHHHHHHCT----TCSCCCHHHHHHHHHHHHH
T ss_pred             chHHHHhhhc--ccc--ccccCcccCCCC-CCceEEEEEECHHHHHHHHHHHhhcCC----CCCcccHHHHHHHHHHHHH
Confidence            2222222210  000  000001000012 467799999999999999999986542    1258999999999999999


Q ss_pred             HhhccCCCCceEEEEEEeecCCCCCCCCCCCCcccccccceeeeecccccccCcHHHHHHHHHHHHhhhhhhh
Q 042461          317 VKARDVEANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDLIKGIKRCC  389 (394)
Q Consensus       317 ~rAr~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~ai~~v~~~~  389 (394)
                      +|||   +++.+++.++||+|+|++||+|++||||++..+.+.++++||.++++|+.+|.+||+++.+++++|
T Consensus       288 ~~Ar---~~~~~~l~~~vd~R~rl~pplP~~Y~GN~~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~~~~~  357 (454)
T 2e1v_A          288 AKSR---NDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDY  357 (454)
T ss_dssp             HHHH---CCSEEEEEEEEECGGGSSSCCCTTBCSCCEEEEEEEEEGGGTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhc---CCCceEEEEEecchhccCCCCCcccccceeeeEEeecchhhccccccHHHHHHHHHHHHHhhhhhh
Confidence            9999   678999999999999999999999999999999999999999843799999999999999997433


No 4  
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=100.00  E-value=3.9e-59  Score=464.45  Aligned_cols=320  Identities=22%  Similarity=0.316  Sum_probs=257.9

Q ss_pred             cceEEeEEEEeeCCCCCCCCCCCCCCCCceeecCcccccccccCCccEEEEEeCCCCCCCCCcchhchHHHHHHHHHHHh
Q 042461            7 RCVKIREVTRVTPFFDSTASTNDNPLPSTALALTYFDTKWFKFPPVQRLFFYRNQTSDTDSIRFNSEILPQLKHSLSLAL   86 (394)
Q Consensus         7 ~~v~v~~~~~V~P~~~~~~~~~~~~~~~~~~~LS~lD~~~~~~~y~~~~~~y~~~~~~~~~~~f~~~~~~~Lk~sL~~~L   86 (394)
                      |+|+|+++++|+|+.|||.       +.+.++||.||++.. ..|++.+|||+.++.  ...++ +.++++||+||+++|
T Consensus         3 m~v~v~~~~~V~P~~ptp~-------~~~~~~LS~lD~~~~-~~~~~~~~~y~~~~~--~~~~~-~~~~~~Lk~sLs~~L   71 (421)
T 2bgh_A            3 PQMEKVSEELILPSSPTPQ-------SLKCYKISHLDQLLL-TCHIPFILFYPNPLD--SNLDP-AQTSQHLKQSLSKVL   71 (421)
T ss_dssp             -CEEEEEEEEEECSSCCCT-------TSCCCBCCHHHHTSC-SSEEEEEEEECCCSS--CCCCH-HHHHHHHHHHHHHHT
T ss_pred             ceEEEeeeEEEeCCCCCCC-------CCcccCCChHHhccc-ccccceEEEEeCCCc--cccch-hhHHHHHHHHHHHHh
Confidence            7899999999999998873       357999999999864 459999999987541  10012 468999999999999


Q ss_pred             hhhcCCCceEecCCCCCCcEEEEcCCCCCCCeEEEEEeecCCccccccCCCCccccccCCCCCCCCCC-----CCCCceE
Q 042461           87 LHYLPLAGHIMWPELEPKPAVYYFPDQKCDGVSFVVAESSDADFDRVSGDGILEAAEYHPLVPQLSIT-----EDKAEVI  161 (394)
Q Consensus        87 ~~~p~LaGrl~~~~~~g~~~i~~~~~~~~~gv~f~~a~~~~~~~~~l~~~~p~~~~~~~~l~p~~~~~-----~~~~Pll  161 (394)
                      ++||||||||+     ++++|+|+ +   +||.|++++ ++.+++++....| +...++.|+|..+..     ..+.|++
T Consensus        72 ~~~~plAGRl~-----~~~~i~c~-~---~Gv~fv~A~-~d~~l~~~~~~~p-~~~~~~~l~p~~~~~~~~~~~~~~pll  140 (421)
T 2bgh_A           72 THFYPLAGRIN-----VNSSVDCN-D---SGVPFVEAR-VQAQLSQAIQNVV-ELEKLDQYLPSAAYPGGKIEVNEDVPL  140 (421)
T ss_dssp             TTSGGGGSEEE-----TTTEEECC-C---CCEEEEEEE-ESSCHHHHHSCCS-SGGGGGGGSSSCSSSSSSSCCCTTCSE
T ss_pred             hhcchhccccC-----CCcEEEEc-C---CceEEEEEE-EcCCHHHHhccCC-ChHHHHhcCCCCCCccccccccCCceE
Confidence            99999999997     25999998 5   799999999 9999999864323 223456677754221     2468999


Q ss_pred             EEEEEEeCCCceEEEEeeeeeeccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCcccc-cccCCC-CCcchH
Q 042461          162 AIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSWAYLCKQLKLQQQQQQQEQTYLPPELTPCFDR-TVVKDP-DGIDLI  239 (394)
Q Consensus       162 ~vQvt~~~~GG~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~g~~~~~~~~~~~~~~~~~~~P~~dr-~~l~~p-~~~~~~  239 (394)
                      .+|||+|+|||++||+++||.++||.|+++||++||++|| |   ..        .+  +.|.+|| +.+..+ ....  
T Consensus       141 ~vQvt~f~cgG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~r-g---~~--------~~--~~P~~dr~~~l~p~~~~~~--  204 (421)
T 2bgh_A          141 AVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCR-G---ET--------EI--VLPNFDLAARHFPPVDNTP--  204 (421)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTCCHHHHHHHHHHHHHHHT-T---CS--------CC--CCCBCSHHHHHSCCCTTCC--
T ss_pred             EEEEEEEcCCCEEEEEEeeEEechHHHHHHHHHHHHHHhc-C---CC--------CC--CCCccccccccCCCcccCC--
Confidence            9999999999999999999999999999999999999999 6   32        11  4688998 655432 1110  


Q ss_pred             hHhhhhcCCCCCCcccccCCCCCCCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHHHHHHHhh
Q 042461          240 YLKHWMSGSSSNRRSLNVMPVKPENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKA  319 (394)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~St~d~L~AllW~~~~rA  319 (394)
                                .       .+  ...+ .++.+++|+|++++|++||+.+.++..     ..++|+||+|+||+|+|++||
T Consensus       205 ----------~-------~~--~~~~-~~~~~~~f~f~~~~i~~LK~~a~~~~~-----~~~~St~d~l~A~iW~~~~~A  259 (421)
T 2bgh_A          205 ----------S-------PE--LVPD-ENVVMKRFVFDKEKIGALRAQASSASE-----EKNFSRVQLVVAYIWKHVIDV  259 (421)
T ss_dssp             ----------C-------CC--CCCC-SSEEEEEEEECHHHHHHHHHHTC----------CCCCHHHHHHHHHHHHHHHH
T ss_pred             ----------C-------Cc--cCCc-cceEEEEEEECHHHHHHHHHHhhccCC-----CCCCchhHhHHHHHHHHHHHH
Confidence                      0       01  1112 568899999999999999999875431     258999999999999999999


Q ss_pred             ccCC--CCceEEEEEEeecCCCCCCCCCCCCcccccccceeeeecccccccCcHHHHHHHHHHHHhhhhhhhhcc
Q 042461          320 RDVE--ANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDLIKGIKRCCSRI  392 (394)
Q Consensus       320 r~~~--~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~ai~~v~~~~~r~  392 (394)
                      |...  +++.+++.++||+|+|++||+|++||||++..+.+.+++++  + .+|+++|.+||+++.+++++|+|.
T Consensus       260 r~~~~~~~~~~~l~~~vd~R~rl~pplP~~y~GN~~~~~~~~~~~~~--~-~~l~~~a~~ir~ai~~~~~~~~~~  331 (421)
T 2bgh_A          260 TRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEW--D-KDFPDLIGPLRTSLEKTEDDHNHE  331 (421)
T ss_dssp             HHHHSCCCSCEEEEEEEESGGGSSSCCCTTBCSCCEEEEEEEECTTC--C-CCGGGGHHHHHHHTCCCSSCHHHH
T ss_pred             hcccCCCCCceEEEEEecCccccCCCCCCCccceEEEEEEEEecccc--c-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9753  46789999999999999999999999999999999888876  3 799999999999999999988764


No 5  
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=100.00  E-value=8.2e-50  Score=400.88  Aligned_cols=317  Identities=14%  Similarity=0.180  Sum_probs=233.4

Q ss_pred             eeecCcccccc--cccCCccEEEEEeCCCCCCCCCcchhchHHHHHHHHHHHhhhhcCCCceEecCC----CCCCcEEEE
Q 042461           36 ALALTYFDTKW--FKFPPVQRLFFYRNQTSDTDSIRFNSEILPQLKHSLSLALLHYLPLAGHIMWPE----LEPKPAVYY  109 (394)
Q Consensus        36 ~~~LS~lD~~~--~~~~y~~~~~~y~~~~~~~~~~~f~~~~~~~Lk~sL~~~L~~~p~LaGrl~~~~----~~g~~~i~~  109 (394)
                      .++||.|||++  +. .|++.+|||+.++   .. .+ +.++++||+||+++|++||||||||+.++    ++|+++|+|
T Consensus         4 ~~~Ls~lD~~~~~~~-~y~~~~~~y~~~~---~~-~~-~~~~~~Lk~sLs~~L~~~~plAGRl~~~~~~~~~~g~~~i~~   77 (451)
T 2rkv_A            4 KIQLDTLGQLPGLLS-IYTQISLLYPVSD---SS-QY-PTIVSTFEQGLKRFSEAVPWVAGQVKAEGISEGNTGTSFIVP   77 (451)
T ss_dssp             CEECCGGGGCTTGGG-CEEEEEEEEECSC---GG-GH-HHHHHHHHHHHHHHHHHSGGGGCEEEEESCBTTBCCEEEEEC
T ss_pred             cccCChhhcCccccc-cceeEEEEEECCC---CC-CH-HHHHHHHHHHHHHHHHhCCceeEEEEECCCCCCCCCcEEEee
Confidence            46999999986  34 4899999999643   21 12 56799999999999999999999998754    248999998


Q ss_pred             cCCCCCCCeEEEEEeecCC-----ccccccC-CCCccccccCCCCCC--CCC-----CCCCCceEEEEEEEeCCCceEEE
Q 042461          110 FPDQKCDGVSFVVAESSDA-----DFDRVSG-DGILEAAEYHPLVPQ--LSI-----TEDKAEVIAIQITLFPNQGFSIG  176 (394)
Q Consensus       110 ~~~~~~~gv~f~~a~~~~~-----~~~~l~~-~~p~~~~~~~~l~p~--~~~-----~~~~~Pll~vQvt~~~~GG~iL~  176 (394)
                      + +   .++.|++++ ++.     ++++|.. +.|........|.|.  .|.     ...+.|++.+|||+| |||++||
T Consensus        78 ~-~---~~~~~~va~-~~~d~~~p~~~~l~~~~~p~~~~~~~~~~p~~~~p~~~~~~~~~~~pll~vQvT~~-~GG~~lg  151 (451)
T 2rkv_A           78 F-E---DVPRVVVKD-LRDDPSAPTIEGMRKAGYPMAMFDENIIAPRKTLPIGPGTGPDDPKPVILLQLNFI-KGGLILT  151 (451)
T ss_dssp             C-C---SSCEEEEEE-CTTCTTSCBHHHHHHHTSCGGGSBHHHHCSSCSSSCSTTCSTTSCCBSEEEEEEEE-BTEEEEE
T ss_pred             c-C---CCCeEEEEe-CCCCCCCCCHHHHHHcCCChhhcCHhhcCCcccCCCCcccCCCCCCceEEEEEEEe-cCceeee
Confidence            6 3   466688888 653     5777752 333221110112221  121     123589999999988 9999999


Q ss_pred             EeeeeeeccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCCC--CCCCcccccccCC-----CCCcchHhHhhhhcCCC
Q 042461          177 VSAHHAVLDGKSTTLFIKSWAYLCKQLKLQQQQQQQEQTYLPP--ELTPCFDRTVVKD-----PDGIDLIYLKHWMSGSS  249 (394)
Q Consensus       177 ~~~~H~v~Dg~g~~~fl~~WA~~~r~g~~~~~~~~~~~~~~~~--~~~P~~dr~~l~~-----p~~~~~~~~~~~~~~~~  249 (394)
                      +++||+++||.|+++||++||++|| |   ..        ++.  ...|.+||+.+..     ++..... +..+.  ..
T Consensus       152 ~~~~H~v~Dg~g~~~Fl~awa~~~r-g---~~--------~~~~~~~~p~~dr~~~~p~~~~~~p~~~~~-~~~~~--~~  216 (451)
T 2rkv_A          152 VNGQHGAMDMVGQDAVIRLLSKACR-N---DP--------FTEEEMTAMNLDRKTIVPYLENYTIGPEVD-HQIVK--AD  216 (451)
T ss_dssp             EEEETTTCCHHHHHHHHHHHHHHHH-T---CC--------CCHHHHHHTTCCSTTSSCCCTTCCCCGGGT-TCBCC--TT
T ss_pred             eeehhccccHHHHHHHHHHHHHHhc-C---CC--------CCccccccccCchhhccccccccCCCcccc-ccccC--CC
Confidence            9999999999999999999999999 6   32        110  0247788874431     1111100 00111  00


Q ss_pred             CCCcccccCCCCCCCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHHHHHHHhhc-c-CCCCce
Q 042461          250 SNRRSLNVMPVKPENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKAR-D-VEANTT  327 (394)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~St~d~L~AllW~~~~rAr-~-~~~~~~  327 (394)
                        + ..  ..  ...+..++.+++|+|++++|++||+.+.++...   +..++|+||+|+||+|||++||| . .++++.
T Consensus       217 --~-~~--~~--~~~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~---~~~~~St~d~l~A~~Wr~~~~Ar~~~~~~~~~  286 (451)
T 2rkv_A          217 --V-AG--GD--AVLTPVSASWAFFTFSPKAMSELKDAATKTLDA---STKFVSTDDALSAFIWKSASRVRLERIDGSAP  286 (451)
T ss_dssp             --S-CC-----------CCEEEEEEEECHHHHHHHHHHHHTTCCT---TCSCCCHHHHHHHHHHHHHHHHHTTTSCTTSE
T ss_pred             --C-CC--CC--CCCCCCCceEEEEEECHHHHHHHHHHHhhhccC---CCCCccHHHHHHHHHHHHHHHHHhccCCCCCc
Confidence              0 00  00  001115678999999999999999999865421   13579999999999999999998 3 567889


Q ss_pred             EEEEEEeecCCCCCCCCCCCCcccccccceeeeecccccccCcHHHHHHHHHHHHhhhhhhh-hcc
Q 042461          328 VRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDLIKGIKRCC-SRI  392 (394)
Q Consensus       328 ~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~ai~~v~~~~-~r~  392 (394)
                      +++.++||+|+|++  +|.+||||++..+.+.++++||.+ .+|+++|.+||+++.+++++| +|.
T Consensus       287 ~~l~~~vd~R~rl~--lP~~y~GN~~~~~~~~~~~~el~~-~~L~~~a~~ir~ai~~~~~~~~~~~  349 (451)
T 2rkv_A          287 TEFCRAVDARPAMG--VSNNYPGLLQNMTYHNSTIGEIAN-ESLGATASRLRSELDPASMRQRTRG  349 (451)
T ss_dssp             EEEEEEEECHHHHT--CCTTCCSCCEEEEEEEEEHHHHHH-SCHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             eEEEEEecccccCC--CCCCCcccceeeecccCcHHHhcc-chHHHHHHHHHHHhcccCchhHHHH
Confidence            99999999999998  899999999999999999999986 899999999999999999888 653


No 6  
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=99.08  E-value=2.5e-08  Score=97.70  Aligned_cols=299  Identities=13%  Similarity=0.097  Sum_probs=163.1

Q ss_pred             CceeecCcccccccccCCccEEEEEeCCCCCCCCCcchhchHHHHHHHHHHHhhhhcCCCceEecCCCCCCcEEEEcCCC
Q 042461           34 STALALTYFDTKWFKFPPVQRLFFYRNQTSDTDSIRFNSEILPQLKHSLSLALLHYLPLAGHIMWPELEPKPAVYYFPDQ  113 (394)
Q Consensus        34 ~~~~~LS~lD~~~~~~~y~~~~~~y~~~~~~~~~~~f~~~~~~~Lk~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~  113 (394)
                      ...+|||++.+.+....| ...+.|+...   .      ...+.|++++.+++.++|.|-.++....+ +.+++... . 
T Consensus         5 ~~~~pls~~Q~~~~~~~y-~~~~~~~l~g---~------ld~~~l~~A~~~lv~rh~~LRt~f~~~~~-~~~q~v~~-~-   71 (422)
T 1q9j_A            5 SVIRKLSHSEEVFAQYEV-FTSMTIQLRG---V------IDVDALSDAFDALLETHPVLASHLEQSSD-GGWNLVAD-D-   71 (422)
T ss_dssp             SEEEECCHHHHHHHHTTC-EEEEEEEEES---C------CCHHHHHHHHHHHHHHCGGGSEEEEECTT-SSEEEEEC-C-
T ss_pred             ceeecCCHHHHHHHhcCc-eEEEEEEEec---C------CCHHHHHHHHHHHHHhCccceEEEEecCC-cceeeecc-C-
Confidence            678999999876432222 2344445443   1      24889999999999999999999986543 33444433 1 


Q ss_pred             CCCCeE-EEEEee-cCCccccccCCCCccccccCCCCCCCCCCCCCCceEEEEEEEeCCCceEEEEeeeeeeccchhHHH
Q 042461          114 KCDGVS-FVVAES-SDADFDRVSGDGILEAAEYHPLVPQLSITEDKAEVIAIQITLFPNQGFSIGVSAHHAVLDGKSTTL  191 (394)
Q Consensus       114 ~~~gv~-f~~a~~-~~~~~~~l~~~~p~~~~~~~~l~p~~~~~~~~~Pll~vQvt~~~~GG~iL~~~~~H~v~Dg~g~~~  191 (394)
                        ..+. +.+.+. ....-.++.          +.   ..+.. ...|++++.+.. ..++..|.+.+||.++||.|+..
T Consensus        72 --~~~~~~~~~d~~~~~~~~~~~----------~~---~~~~d-~~~pl~r~~l~~-~~~~~~l~l~~hH~i~Dg~S~~~  134 (422)
T 1q9j_A           72 --LLHSGICVIDGTAATNGSPSG----------NA---ELRLD-QSVSLLHLQLIL-REGGAELTLYLHHCMADGHHGAV  134 (422)
T ss_dssp             --SSSCCCEEEC----------------------C---CCCCC-TTTCSEEEEEEC-CSSSCEEEEEEEGGGCCHHHHHH
T ss_pred             --CCCCceEEEECCCCCcchhhh----------cc---cCccC-CCCCcEEEEEEe-cCCCeEEEEEeceEEEchhhHHH
Confidence              1212 222220 000000010          00   01112 467889888887 68899999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhccccCCCCCCCccc--ccccC-C------CCCcchHhHhhhhcCCCCCCcccccCCCCC
Q 042461          192 FIKSWAYLCKQLKLQQQQQQQEQTYLPPELTPCFD--RTVVK-D------PDGIDLIYLKHWMSGSSSNRRSLNVMPVKP  262 (394)
Q Consensus       192 fl~~WA~~~r~g~~~~~~~~~~~~~~~~~~~P~~d--r~~l~-~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (394)
                      |++.|.+.++..   ..+.    ...+....+..+  ..... .      ..... ....+||.....  ....++...+
T Consensus       135 l~~~l~~~Y~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~W~~~l~--~~~~lp~~~~  204 (422)
T 1q9j_A          135 LVDELFSRYTDA---VTTG----DPGPITPQPTPLSMEAVLAQRGIRKQGLSGAE-RFMSVMYAYEIP--ATETPAVLAH  204 (422)
T ss_dssp             HHHHHHHHHHHH---HHSS----SCCCCCCCCCCBCHHHHHHHSSCCC-----CT-TSSTTTTCC---------------
T ss_pred             HHHHHHHHHHHh---hccC----CCCCCCCCCCCCCHHHHHHhcCCcccccchhh-hhhhhhhcccCC--CcccCCCCCC
Confidence            999999998841   1100    001100011111  11000 0      00000 001133311000  0001110000


Q ss_pred             CCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHHHHHHHhhccCCCCceEEEEEEeecCCCCCC
Q 042461          263 ENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKARDVEANTTVRFVITTDCRSRLDP  342 (394)
Q Consensus       263 ~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~St~d~L~AllW~~~~rAr~~~~~~~~~l~~~vd~R~rl~p  342 (394)
                      ...........+.++.+..++|++.|..         ..+|.++++.|.+...+.|-+. .......+.++++.|....|
T Consensus       205 ~~~~~~~~~~~~~l~~~~~~~l~~~a~~---------~~~t~~~~l~aa~~~~l~r~~~-~~~~~v~~g~~~~~R~~~~~  274 (422)
T 1q9j_A          205 PGLPQAVPVTRLWLSKQQTSDLMAFGRE---------HRLSLNAVVAAAILLTEWQLRN-TPHVPIPYVYPVDLRFVLAP  274 (422)
T ss_dssp             CCSBCCCCEEEECCCHHHHHHHHHHHTT---------TTCCHHHHHHHHHHHHHHHHHT-CSSCCEEEEEEEETTTTSSS
T ss_pred             CCCCCCccceEEEeCHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHhccc-CCCceEEEeeeeecccccCC
Confidence            0111224567889999999999998863         3579999999987777665421 24567889999999998765


Q ss_pred             CCCCCCcccccccceeeeecccccccCcHHHHHHHHHHHHhhh
Q 042461          343 PIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDLIKGI  385 (394)
Q Consensus       343 plp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~ai~~v  385 (394)
                      +++-.=+.|++.+....+++..   ..++.++...+++.+.+.
T Consensus       275 ~~~~~~~~~~vG~f~n~lp~~~---~~~~~~~l~~v~~~~~~~  314 (422)
T 1q9j_A          275 PVAPTEATNLLGAASYLAEIGP---NTDIVDLASDIVATLRAD  314 (422)
T ss_dssp             CCCTTTBSCCEEEEEEEECCCS---SCCHHHHHHHHHHHHHHH
T ss_pred             CCChhhhhhhheeeeeeeeccC---CCCHHHHHHHHHHHHHHH
Confidence            5432222333333323333321   246777777777776653


No 7  
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.57  E-value=1.1e-05  Score=81.38  Aligned_cols=261  Identities=12%  Similarity=0.095  Sum_probs=148.7

Q ss_pred             hHHHHHHHHHHHhhhhcCCCceEecCCCCCCcEEEEcCCCCCCCeEEEEEeecC-CccccccCCCCccccccCCCCCCCC
Q 042461           74 ILPQLKHSLSLALLHYLPLAGHIMWPELEPKPAVYYFPDQKCDGVSFVVAESSD-ADFDRVSGDGILEAAEYHPLVPQLS  152 (394)
Q Consensus        74 ~~~~Lk~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~~~~gv~f~~a~~~~-~~~~~l~~~~p~~~~~~~~l~p~~~  152 (394)
                      ..+.|++++.+++.+++.|--++....  |.+.-...+.   ..+.+.+.+ .. ..+.++...       ...  | + 
T Consensus       132 d~~~l~~A~~~lv~rh~~LRt~f~~~~--~~~~q~v~~~---~~~~~~~~~-~~~~~~~~~~~~-------~~~--~-f-  194 (520)
T 2jgp_A          132 ERTRVEAAFQRLIARHESLRTSFAVVN--GEPVQNIHED---VPFALAYSE-VTEEEARELVSS-------LVQ--P-F-  194 (520)
T ss_dssp             CHHHHHHHHHHHHHHCGGGGEEEEEET--TEEEEEECSC---CCCCCEEEE-CCHHHHHHHHHH-------TCC--C-C-
T ss_pred             CHHHHHHHHHHHHHHhHhheeEEEeeC--CEEEEEECCC---CCCceEEEe-CCHHHHHHHHHH-------hcC--C-C-
Confidence            489999999999999999999987532  3332222212   222222222 11 111111100       000  0 1 


Q ss_pred             CCCCCCceEEEEEEEeCCCceEEEEeeeeeeccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCccc-----c
Q 042461          153 ITEDKAEVIAIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSWAYLCKQLKLQQQQQQQEQTYLPPELTPCFD-----R  227 (394)
Q Consensus       153 ~~~~~~Pll~vQvt~~~~GG~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~g~~~~~~~~~~~~~~~~~~~P~~d-----r  227 (394)
                       .-...|++++.+-....+...|.+.+||.++||.|+..|++.+.+.++ +   ..        +++...+..|     +
T Consensus       195 -dl~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~el~~~Y~-~---~~--------l~~~~~~~~d~~~~~~  261 (520)
T 2jgp_A          195 -DLEVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSGILLAEWVQLYQ-G---DV--------LPELRIQYKDFAVWQQ  261 (520)
T ss_dssp             -CTTSSCCEEEEEEEEETTEEEEEEEEBGGGCCHHHHHHHHHHHHHHHT-T---CC--------CCCCSCCHHHHHHHHH
T ss_pred             -CCCCCcceeEEEEEEcCCcEEEEEEccceeecHhHHHHHHHHHHHHHc-c---CC--------CCCCCCCHHHHHHHHH
Confidence             113568888888777667899999999999999999999999999998 4   22        2211111111     1


Q ss_pred             cccCCCCCcchHhHhhhhcCCC-CCCcccccCCCC--CCCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCcccH
Q 042461          228 TVVKDPDGIDLIYLKHWMSGSS-SNRRSLNVMPVK--PENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSS  304 (394)
Q Consensus       228 ~~l~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~St  304 (394)
                      ... .....  ....+||.... ..+....++...  +...........+.++.+..++|++.|...         .+|.
T Consensus       262 ~~~-~~~~~--~~~~~yW~~~l~~~~~~~~lp~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~a~~~---------~~T~  329 (520)
T 2jgp_A          262 EFS-QSAAF--HKQEAYWLQTFADDIPVLNLPTDFTRPSTQSFAGDQCTIGAGKALTEGLHQLAQAT---------GTTL  329 (520)
T ss_dssp             HHT-TSHHH--HHHHHHHHHHTSSCCCCCCCCCSSCCCSSCCCBEEEEEEECCHHHHHHHHHHHHHH---------TCCH
T ss_pred             Hhh-cChhh--HHHHHHHHHHhCCCCCcCCCCCCCCCCCCCCCCccEEEEeCCHHHHHHHHHHHHHc---------CCCH
Confidence            100 00000  11123331000 000011111100  111112345678899999999999988754         4788


Q ss_pred             HHHHHHHHHHHHHhhccCCCCceEEEEEEeecCCCCCCCCCCCCcccccccceeeeecccccccCcHHHHHHHHHHHHhh
Q 042461          305 FVITCAHVFVWLVKARDVEANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDLIKG  384 (394)
Q Consensus       305 ~d~L~AllW~~~~rAr~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~ai~~  384 (394)
                      +.++.|.+-..+.+--   ......+.+++++|..-   --.+-+|+++-.....+....   ..++.++...+++.+.+
T Consensus       330 ~~~l~aa~a~~L~~~~---~~~dv~~g~~~~gR~~~---~~~~~vG~f~n~lplr~~~~~---~~~~~~~l~~v~~~~~~  400 (520)
T 2jgp_A          330 YMVLLAAYNVLLAKYA---GQEDIIVGTPITGRSHA---DLEPIVGMFVNTLAMRNKPQR---EKTFSEFLQEVKQNALD  400 (520)
T ss_dssp             HHHHHHHHHHHHHHHH---TCSCEEEEEEECCCCSG---GGTTCCSCCCEEEEEEECCCT---TSBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc---CCCCeEEEeccCCCCch---hhhccEEeeeeeeeEEecCCC---CCCHHHHHHHHHHHHHH
Confidence            9998887665555543   34578899999999762   234667776655554544322   25777777777777655


Q ss_pred             h
Q 042461          385 I  385 (394)
Q Consensus       385 v  385 (394)
                      .
T Consensus       401 ~  401 (520)
T 2jgp_A          401 A  401 (520)
T ss_dssp             H
T ss_pred             H
Confidence            3


No 8  
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.46  E-value=6.5e-06  Score=82.39  Aligned_cols=289  Identities=9%  Similarity=0.004  Sum_probs=161.6

Q ss_pred             CceeecCccccccc------ccCCccEEEEEeCCCCCCCCCcchhchHHHHHHHHHHHhhhhcCCCceEecCCCCCCcEE
Q 042461           34 STALALTYFDTKWF------KFPPVQRLFFYRNQTSDTDSIRFNSEILPQLKHSLSLALLHYLPLAGHIMWPELEPKPAV  107 (394)
Q Consensus        34 ~~~~~LS~lD~~~~------~~~y~~~~~~y~~~~~~~~~~~f~~~~~~~Lk~sL~~~L~~~p~LaGrl~~~~~~g~~~i  107 (394)
                      ...+|||+.-+.+.      +.......+.|+...         ....++|++++.+++.+++.|--++....  |.+. 
T Consensus        11 ~~~~Pls~~Q~~~~~~~~~~~~~~y~~~~~~~l~g---------~ld~~~L~~A~~~lv~rh~~LRt~f~~~~--~~~~-   78 (493)
T 4hvm_A           11 PGLRRASFLQRGAWRWLREAPPAAAFAARGLLGSG---------RIDDDRLAAAADEVLDAFPLLRVNFVDDD--GLWM-   78 (493)
T ss_dssp             -CEEECCHHHHHHHHHHTTSCGGGGEEEEEEEEES---------SCCHHHHHHHHHHHHHHCGGGGEEEEESS--SEEE-
T ss_pred             CCCCCCCHHHHHHHHHHhhCCCCcceeEEEEEEeC---------CCCHHHHHHHHHHHHHhchhceeEEEccC--CEEE-
Confidence            66899998765321      100112344555543         13489999999999999999999987643  5555 


Q ss_pred             EEcCCCCCCCeEEEEEeecCC------ccccccCCCCccccccCCCCCCCCCCCCCCceEEEEEEEeCCCceEEEEeeee
Q 042461          108 YYFPDQKCDGVSFVVAESSDA------DFDRVSGDGILEAAEYHPLVPQLSITEDKAEVIAIQITLFPNQGFSIGVSAHH  181 (394)
Q Consensus       108 ~~~~~~~~~gv~f~~a~~~~~------~~~~l~~~~p~~~~~~~~l~p~~~~~~~~~Pll~vQvt~~~~GG~iL~~~~~H  181 (394)
                      ...+.   . +.+.+.+ ...      .+.++...   .  .-..|      .-...|++++.+-....+...|.+.+||
T Consensus        79 ~v~~~---~-~~~~~~d-~~~~~~~~~~~~~~~~~---~--~~~~f------dl~~~pl~r~~l~~~~~~~~~l~l~~HH  142 (493)
T 4hvm_A           79 RTREN---A-DALVRSD-LRGHPDPQARCVELLRA---D--RDRPT------DPERDPLVRLHLVRLSETDVVLGVVAHQ  142 (493)
T ss_dssp             EECSC---C-CCEEEEE-CTTSSSHHHHHHHHHHH---H--HSSCC------CTTTSCSEEEEEEECSSSEEEEEEEEET
T ss_pred             EecCC---C-CCceEEE-CCCCCchHHHHHHHHHH---H--hcCCC------CCCCCCeEEEEEEEECCCcEEEEEecch
Confidence            44433   3 4554444 211      11111100   0  00111      1135588988888886677899999999


Q ss_pred             eeccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCcccccccCC-CC--Ccc---hHhHhhhhcCC-CCCCcc
Q 042461          182 AVLDGKSTTLFIKSWAYLCKQLKLQQQQQQQEQTYLPPELTPCFDRTVVKD-PD--GID---LIYLKHWMSGS-SSNRRS  254 (394)
Q Consensus       182 ~v~Dg~g~~~fl~~WA~~~r~g~~~~~~~~~~~~~~~~~~~P~~dr~~l~~-p~--~~~---~~~~~~~~~~~-~~~~~~  254 (394)
                      .++||.|+..|++.+.+.+. |   ..        .+   .+..|  .... ..  ...   .....+||... ...+. 
T Consensus       143 ~i~Dg~S~~~l~~~l~~~Y~-g---~~--------~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~-  204 (493)
T 4hvm_A          143 MLLDARSRYMVLGAVWQAYY-G---RF--------RP---AQYRD--FAEVADFHPLDRETVRVARHRWWSRRLPALPV-  204 (493)
T ss_dssp             TTCCHHHHHHHHHHHHHHHT-T---CC--------CG---GGSBC--GGGTTTCCTTCSHHHHHHHHHHHHHHGGGSCC-
T ss_pred             hhccHHHHHHHHHHHHHHhC-C---CC--------CC---cCHHH--HHHHHhhhhcccChhhHHHHHHHHHhccCCCC-
Confidence            99999999999999999996 6   32        11   11111  1110 00  011   11112333100 00000 


Q ss_pred             cccCCCCCCCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCccc--HHHHHHHHHHHHHHhhccC--------CC
Q 042461          255 LNVMPVKPENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLS--SFVITCAHVFVWLVKARDV--------EA  324 (394)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~S--t~d~L~AllW~~~~rAr~~--------~~  324 (394)
                      +  ..  ...+........+.++.+..++|++.|..         ..+|  .+.++.|.+...+.+-+.-        ..
T Consensus       205 l--~~--~~~~~~~~~~~~~~l~~~~~~~l~~~a~~---------~~vt~~~~~~l~aa~a~~L~~~~~~~~~~~~~~~g  271 (493)
T 4hvm_A          205 R--GG--DGGPVGPPETSRLRVPGSRWQALTEPGGP---------LGGNGSLAMAALTAWWLWTQGAGTGTDTGAGTGTG  271 (493)
T ss_dssp             C--C---------CCEEEEEEEEHHHHHHHHCC---------------CHHHHHHHHHHHHHHHC---------------
T ss_pred             C--CC--CCCCCCCCeeEEEEcCHHHHHHHHHHHHH---------cCCCchHHHHHHHHHHHHHHHhhhcccccccCcCC
Confidence            1  11  01111225678899999999999988764         3478  9999998766666554110        24


Q ss_pred             CceEEEEEEeecCCCCCCCCCCCCcccccccceeeeecccccccCcHHHHHHHHHHHHhhh
Q 042461          325 NTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDLIKGI  385 (394)
Q Consensus       325 ~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~ai~~v  385 (394)
                      .....+.+++++|..-   --.+.+|+++-.....+......+ .++.+++..+++.+.+.
T Consensus       272 ~~dv~~g~~~~gR~~~---~~~~~vG~f~n~lplr~~~~~~~~-~t~~~~l~~v~~~~~~~  328 (493)
T 4hvm_A          272 KDSLYLSTEVDLRDHL---QLGSVVGPLTDRVVFGVDLTGLRE-PSFRDLMSRTQAGFLDA  328 (493)
T ss_dssp             -CEEEEEEEEEHHHHT---TCCSBCSCCEEEEEEEEECTTCSS-CBHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeccCCCCc---chhcCeEeeeceeEEEEecCCCcC-CCHHHHHHHHHHHHHHH
Confidence            5678999999999662   345677877666555555443212 57777777777766543


No 9  
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.43  E-value=2.3e-05  Score=76.78  Aligned_cols=260  Identities=13%  Similarity=0.037  Sum_probs=146.4

Q ss_pred             hHHHHHHHHHHHhhhhcCCCceEecCCCCCCcEEEEcCCCCCCCeEEEEEeecC--Cc----cccccCCCCccccccCCC
Q 042461           74 ILPQLKHSLSLALLHYLPLAGHIMWPELEPKPAVYYFPDQKCDGVSFVVAESSD--AD----FDRVSGDGILEAAEYHPL  147 (394)
Q Consensus        74 ~~~~Lk~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~~~~gv~f~~a~~~~--~~----~~~l~~~~p~~~~~~~~l  147 (394)
                      ..+.|++++.+++.+++.|--++....  |  .+.-.     ..+.+.+.+ ..  ..    +.++...   ..  -..|
T Consensus        34 d~~~L~~A~~~lv~rh~~LRt~f~~~~--~--~v~~~-----~~~~~~~~d-~~~~~~~~~~~~~~~~~---~~--~~~f   98 (436)
T 1l5a_A           34 DTTLLLRALHLTVSEIDLFRARFSAQG--E--LYWHP-----FSPPIDYQD-LSIHLEAEPLAWRQIEQ---DL--QRSS   98 (436)
T ss_dssp             CHHHHHHHHHHHHHTCGGGGEEECTTC--C--EEECS-----SCCCCEEEE-CTTCTTHHHHHHHHHHH---HH--TSCC
T ss_pred             CHHHHHHHHHHHHHHhheeEEEEEecC--C--eECCC-----cCCCccEEe-CCCCCCHHHHHHHHHHH---Hh--cCCC
Confidence            489999999999999999999987532  4  33322     222333333 11  00    1111100   00  0011


Q ss_pred             CCCCCCCCCCCceEEEEEEEeCCCceEEEEeeeeeeccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCccc-
Q 042461          148 VPQLSITEDKAEVIAIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSWAYLCKQLKLQQQQQQQEQTYLPPELTPCFD-  226 (394)
Q Consensus       148 ~p~~~~~~~~~Pll~vQvt~~~~GG~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~g~~~~~~~~~~~~~~~~~~~P~~d-  226 (394)
                            .-...|++++.+-....+...|.+.+||.++||.|+..|++.+.+.+...   ..+     ...+....+..| 
T Consensus        99 ------dl~~~pl~r~~l~~~~~~~~~l~~~~HH~i~Dg~S~~~l~~~l~~~Y~~~---~~g-----~~~~~~~~~~~~~  164 (436)
T 1l5a_A           99 ------TLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSL---LSG-----QTPTAAFKPYQSY  164 (436)
T ss_dssp             ------CCBTSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHH---HHT-----CCCCCCCCCHHHH
T ss_pred             ------CcCCCCCeEEEEEEEcCCEEEEEEeehhheecHhHHHHHHHHHHHHHHHH---hcC-----CCCCCCccCHHHH
Confidence                  11355888888877767889999999999999999999999999998842   110     101110011111 


Q ss_pred             ----ccccCCCCCcchHhHhhhhcCC-CCCCcccccCCCCCCCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCc
Q 042461          227 ----RTVVKDPDGIDLIYLKHWMSGS-SSNRRSLNVMPVKPENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQY  301 (394)
Q Consensus       227 ----r~~l~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~  301 (394)
                          +..+.. ...  .....||... ...+....++.. ............+.++.+..++|++.|...         .
T Consensus       165 ~~~~~~~~~~-~~~--~~~~~~W~~~l~~~~~~~~lp~~-~~~~~~~~~~~~~~l~~~~~~~l~~~a~~~---------~  231 (436)
T 1l5a_A          165 LEEEAAYLTS-HRY--WQDKQFWQGYLREAPDLTLTSAT-YDPQLSHAVSLSYTLNSQLNHLLLKLANAN---------Q  231 (436)
T ss_dssp             HHHHHHHHTS-HHH--HHHHHHHHHHHHTSCCCCBCCTT-CCGGGCCEEEEEEECCHHHHHHHHHHHHHT---------T
T ss_pred             HHHHHHhhcc-HhH--HHHHHHHHHHhcCCCCcccCCCC-CCCCcccceeeEEecCHHHHHHHHHHHHHh---------C
Confidence                000100 000  0111232100 000000111110 111112345678899999999999998753         4


Q ss_pred             ccHHHHHHHHHHHHHHhhccCCCCceEEEEEEeecCCCCCCCCCCCCcccccccceeeeecccccccCcHHHHHHHHHHH
Q 042461          302 LSSFVITCAHVFVWLVKARDVEANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDL  381 (394)
Q Consensus       302 ~St~d~L~AllW~~~~rAr~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~a  381 (394)
                      +|.+.++.|.+-..+.+--   . ....+.+++++|..  + --.+-+|+++-.....+....   ..++.+++..+++.
T Consensus       232 ~t~~~~l~aa~~~~L~~~~---g-~dv~ig~~~~~R~~--~-~~~~~vG~f~n~lplr~~~~~---~~t~~~~l~~v~~~  301 (436)
T 1l5a_A          232 IGWPDALVALCALYLESAE---P-DAPWLWLPFMNRWG--S-VAANVPGLMVNSLPLLRLSAQ---QTSLGNYLKQSGQA  301 (436)
T ss_dssp             CCHHHHHHHHHHHHHHHHS---T-TCCEEEEEECCCTT--S-GGGGSCSCCCEEEEEECCCCT---TCBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh---C-CceEEeeecccCCC--h-HHhcCcceEEEEEEEEEecCC---CCCHHHHHHHHHHH
Confidence            7889999887665555442   4 67889999999975  1 234566666554444443322   25778888888777


Q ss_pred             Hhhh
Q 042461          382 IKGI  385 (394)
Q Consensus       382 i~~v  385 (394)
                      +.+.
T Consensus       302 ~~~~  305 (436)
T 1l5a_A          302 IRSL  305 (436)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554


No 10 
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=98.42  E-value=0.00017  Score=71.28  Aligned_cols=305  Identities=12%  Similarity=0.051  Sum_probs=164.1

Q ss_pred             CceeecCccccccc------ccCCccEEEEEeCCCCCCCCCcchhchHHHHHHHHHHHhhhhcCCCceEecCCCCCCcEE
Q 042461           34 STALALTYFDTKWF------KFPPVQRLFFYRNQTSDTDSIRFNSEILPQLKHSLSLALLHYLPLAGHIMWPELEPKPAV  107 (394)
Q Consensus        34 ~~~~~LS~lD~~~~------~~~y~~~~~~y~~~~~~~~~~~f~~~~~~~Lk~sL~~~L~~~p~LaGrl~~~~~~g~~~i  107 (394)
                      ...+|||+..+ |.      ........+.|+...   .      ...+.|+++|.+++.+++.|--++....  |.+.-
T Consensus        15 ~~~~pls~~Q~-~~~~~~~~~~~~y~~~~~~~l~g---~------ld~~~L~~Al~~lv~rh~~LRt~f~~~~--~~~~q   82 (466)
T 2xhg_A           15 AGNVPLTPIQK-WFFGKNFTNTGHWNQSSVLYRPE---G------FDPKVIQSVMDKIIEHHDALRMVYQHEN--GNVVQ   82 (466)
T ss_dssp             CEECCCCHHHH-HHHHTTCTTTTCBEEEEEEEETT---C------CCHHHHHHHHHHHHHHSGGGGEEEECGG--GCCEE
T ss_pred             CCCCCCCHHHH-HHHhCCCCCcCcceeEEEEEcCC---C------CCHHHHHHHHHHHHHhChHhheEEecCC--Cceee
Confidence            56889998765 21      111122345555554   2      3489999999999999999999988542  44322


Q ss_pred             EEcCCCCCCCeEEEEEeecC--CccccccCCCCccccccCCCCCCCCCCCCCCceEEEEEEEeCCCceEEEEeeeeeecc
Q 042461          108 YYFPDQKCDGVSFVVAESSD--ADFDRVSGDGILEAAEYHPLVPQLSITEDKAEVIAIQITLFPNQGFSIGVSAHHAVLD  185 (394)
Q Consensus       108 ~~~~~~~~~gv~f~~a~~~~--~~~~~l~~~~p~~~~~~~~l~p~~~~~~~~~Pll~vQvt~~~~GG~iL~~~~~H~v~D  185 (394)
                      ...+.. ...+.+.+.+ ..  .+.++....   -......  | +  .-...|++++.+-... ++-.|-+.+||.++|
T Consensus        83 ~v~~~~-~~~~~~~~~d-~~~~~~~~~~~~~---~~~~~~~--~-f--dl~~~pl~r~~l~~~~-~~~~l~l~~HH~i~D  151 (466)
T 2xhg_A           83 HNRGLG-GQLYDFFSYN-LTAQPDVQQAIEA---ETQRLHS--S-M--NLQEGPLVKVALFQTL-HGDHLFLAIHHLVVD  151 (466)
T ss_dssp             EECCSS-SCCCEEEEEE-CTTCSCHHHHHHH---HHHHHHT--T-C--CTTTCCCEEEEEEEET-TEEEEEEEEEGGGCC
T ss_pred             eccccc-cccceeEEEe-cCCcccHHHHHHH---HHHHHHh--c-c--CCCCCCeEEEEEEEcC-CCCEEEEEeeeeeec
Confidence            222110 0233343333 21  111111000   0000000  0 1  1135688988888884 454577999999999


Q ss_pred             chhHHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCccc-----ccccCCCC-CcchHhHhhhhcCCCCCCcccccCC
Q 042461          186 GKSTTLFIKSWAYLCKQLKLQQQQQQQEQTYLPPELTPCFD-----RTVVKDPD-GIDLIYLKHWMSGSSSNRRSLNVMP  259 (394)
Q Consensus       186 g~g~~~fl~~WA~~~r~g~~~~~~~~~~~~~~~~~~~P~~d-----r~~l~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~  259 (394)
                      |.|+..|++.+.+.++..   ..+  .. ..+++...+..|     +..+..+. .-...++.+.....+.    ..++.
T Consensus       152 g~S~~~l~~el~~~Y~~~---~~g--~~-~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~----~~lp~  221 (466)
T 2xhg_A          152 GISWRILFEDLATGYAQA---LAG--QA-ISLPEKTDSFQSWSQWLQEYANEADLLSEIPYWESLESQAKN----VSLPK  221 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HTT--CC-CCCCCCCSCHHHHHHHHHHHTTSHHHHTTHHHHHHHHHHCCC----CCCCC
T ss_pred             hhhHHHHHHHHHHHHHHH---HcC--CC-CCCCCCCCCHHHHHHHHHHHhcCccchhhhHHHHHhhccCCc----ccCCc
Confidence            999999999999998732   110  00 001110001101     00000000 0011122111100000    01111


Q ss_pred             CC--CCCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHHHHHHHhhccCCCCceEEEEEEeecC
Q 042461          260 VK--PENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKARDVEANTTVRFVITTDCR  337 (394)
Q Consensus       260 ~~--~~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~St~d~L~AllW~~~~rAr~~~~~~~~~l~~~vd~R  337 (394)
                      ..  +...........+.++.+..++|++.|...        ..+|.++++.|.+-..+.+-.   ......+.+++++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--------~~~t~~~~llaa~~~~l~~~~---~~~dv~ig~~~~gR  290 (466)
T 2xhg_A          222 DYEVTDCKQKSVRNMRIRLHPEETEQLLKHANQA--------YQTEINDLLLAALGLAFAEWS---KLAQIVIHLEGHGR  290 (466)
T ss_dssp             SSCCSSCBGGGEEEEEEECCHHHHHHHHHTGGGT--------TTCCHHHHHHHHHHHHHHHHH---CCSEEEEEEEECCC
T ss_pred             cccccccccccceEEEEEcCHHHHHHHHHHhHHh--------hCCCHHHHHHHHHHHHHHHHh---CCCceEEEecCCCC
Confidence            00  011112345678899999999998876432        247889999887766665553   34568899999999


Q ss_pred             CCCCC-CCCCCCcccccccceeeeecccccccCcHHHHHHHHHHHHhhh
Q 042461          338 SRLDP-PIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDLIKGI  385 (394)
Q Consensus       338 ~rl~p-plp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~ai~~v  385 (394)
                      ....+ +--.+-+|+++......+....   ..++..++..|++.+..+
T Consensus       291 ~~~~~~~~~~~~vG~f~n~lplr~~~~~---~~~~~~~l~~v~~~~~~~  336 (466)
T 2xhg_A          291 EDIIEQANVARTVGWFTSQYPVLLDLKQ---TAPLSDYIKLTKENMRKI  336 (466)
T ss_dssp             CSCSTTCCCTTCCSCCCEEEEEEEECSC---CCSHHHHHHHHHHHHHHS
T ss_pred             CccccCCCccccccceeeeccEEEecCC---CCCHHHHHHHHHHHHHhC
Confidence            87521 1234666776655544444332   257888889998888776


No 11 
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.23  E-value=7.6e-05  Score=83.62  Aligned_cols=271  Identities=11%  Similarity=0.058  Sum_probs=151.6

Q ss_pred             hHHHHHHHHHHHhhhhcCCCceEecCCCCCCcEEEEcCCCCCCCeEEEEEeecCCc-------cccccCCCCccccccCC
Q 042461           74 ILPQLKHSLSLALLHYLPLAGHIMWPELEPKPAVYYFPDQKCDGVSFVVAESSDAD-------FDRVSGDGILEAAEYHP  146 (394)
Q Consensus        74 ~~~~Lk~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~~~~gv~f~~a~~~~~~-------~~~l~~~~p~~~~~~~~  146 (394)
                      ..+.|++++.+++.+++.|--++.....++-.++... .   ..+.+.+.+....+       +.++..+   ...  +.
T Consensus        48 d~~~l~~A~~~lv~rH~~LRt~f~~~~~~~p~Q~v~~-~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~--~~  118 (1304)
T 2vsq_A           48 NIKCLEESMNVIMDRYDVFRTVFIHEKVKRPVQVVLK-K---RQFHIEEIDLTHLTGSEQTAKINEYKEQ---DKI--RG  118 (1304)
T ss_dssp             CHHHHHHHHHHHHHHCGGGGEEEECSSCSSCEEEEES-C---CCCCEEEEECTTSCHHHHHHHHHHHHHH---HHH--HC
T ss_pred             CHHHHHHHHHHHHHhhhhceEEEEEcCCCeEEEEECC-C---CCCceEEEECCCCCchhHHHHHHHHHHH---Hhc--CC
Confidence            4899999999999999999999886533123344443 2   23333333311111       1111100   000  00


Q ss_pred             CCCCCCCCCCCCceEEEEEEEeCCCceEEEEeeeeeeccchhHHHHHHHHHHHHhhhhhhhhhhhhccccCCCCCCCccc
Q 042461          147 LVPQLSITEDKAEVIAIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSWAYLCKQLKLQQQQQQQEQTYLPPELTPCFD  226 (394)
Q Consensus       147 l~p~~~~~~~~~Pll~vQvt~~~~GG~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~g~~~~~~~~~~~~~~~~~~~P~~d  226 (394)
                      |      .-...|++++.+-....+...|.+.+||.++||.|+..|++.+++.+++.   ..+   .+..++ ...+..|
T Consensus       119 f------dl~~~pl~r~~l~~~~~~~~~l~~~~HHii~DG~S~~~l~~el~~~Y~~~---~~g---~~~~l~-~~~~y~d  185 (1304)
T 2vsq_A          119 F------DLTRDIPMRAAIFKKAEESFEWVWSYHHIILDGWCFGIVVQDLFKVYNAL---REQ---KPYSLP-PVKPYKD  185 (1304)
T ss_dssp             C------CTTTSCSEEEEEEEEETTEEEEEEEEEGGGCCHHHHHHHHHHHHHHHHHH---HTT---CCCCCC-CCCCTHH
T ss_pred             C------CCCCCCcEEEEEEEECCCcEEEEEecCceeechhhHHHHHHHHHHHHHHh---hcC---CCCCCC-CcccHHH
Confidence            1      11356899998888877889999999999999999999999999998842   111   001011 1111111


Q ss_pred             cc-ccCCCCCcchHhHhhhhcCC-CCCCcccccCCCC-CCCCCCCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCccc
Q 042461          227 RT-VVKDPDGIDLIYLKHWMSGS-SSNRRSLNVMPVK-PENYYSNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLS  303 (394)
Q Consensus       227 r~-~l~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~S  303 (394)
                      -. .+.... .  ....+||... ...+....++... +...........|.++++..++||+.|...         .+|
T Consensus       186 ~~~~~~~~~-~--~~~~~yW~~~L~~~~~~~~lp~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~a~~~---------~~T  253 (1304)
T 2vsq_A          186 YIKWLEKQD-K--QASLRYWREYLEGFEGQTTFAEQRKKQKDGYEPKELLFSPSEAETKAFTELAKSQ---------HTT  253 (1304)
T ss_dssp             HHHHHHTSC-H--HHHHHHHHHHHTTCCCCCTTTTTCCCSSCCCCEEEEEECCCHHHHHHHHHHHHHT---------TCC
T ss_pred             HHHHHhcch-h--hHHHHHHHHHhCCCCccccCCCCCCccccccCcceEEEecCHHHHHHHHHHHHHc---------CCC
Confidence            00 011111 1  1111233100 0000000111100 011112345677889999999999998753         478


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCceEEEEEEeecCCCCCCCCCCCCcccccccceeeeecccccccCcHHHHHHHHHHHHh
Q 042461          304 SFVITCAHVFVWLVKARDVEANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEAKASGFMQENGFAFVAHKLSDLIK  383 (394)
Q Consensus       304 t~d~L~AllW~~~~rAr~~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~~~~~l~~~~~L~~~A~~IR~ai~  383 (394)
                      .+.+|.|.+-..+.|--   ..+...+..++..|..-.+.+ ++-+|+.+-....++..+.   ..++.++...+++...
T Consensus       254 ~~~vllaa~a~~L~r~t---g~~dvv~G~pvsgR~~~~~~~-~~~vG~fvntlplr~~~~~---~~s~~~ll~~v~~~~~  326 (1304)
T 2vsq_A          254 LSTALQAVWSVLISRYQ---QSGDLAFGTVVSGRPAEIKGV-EHMVGLFINVVPRRVKLSE---GITFNGLLKRLQEQSL  326 (1304)
T ss_dssp             HHHHHHHHHHHHHHHHH---TCSEEEEEEEECCCCTTSTTG-GGCCSSCCEEEEEEEECCT---TCBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc---CCCCEEEEEEeCCCCccchhh-hcccccceeEEEEEecCCC---CCcHHHHHHHHHHHHH
Confidence            89988886555554442   345789999999997632222 3556666555444444332   2578888888887765


Q ss_pred             hh
Q 042461          384 GI  385 (394)
Q Consensus       384 ~v  385 (394)
                      +.
T Consensus       327 ~a  328 (1304)
T 2vsq_A          327 QS  328 (1304)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53


No 12 
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=98.20  E-value=0.0001  Score=74.25  Aligned_cols=294  Identities=13%  Similarity=0.122  Sum_probs=149.2

Q ss_pred             hchHHHHHHHHHHHhhhhcCCCceEecCCCCCCcEEEEcCCCCCCCe------EEEEEeecCCcccccc----------C
Q 042461           72 SEILPQLKHSLSLALLHYLPLAGHIMWPELEPKPAVYYFPDQKCDGV------SFVVAESSDADFDRVS----------G  135 (394)
Q Consensus        72 ~~~~~~Lk~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~~~~gv------~f~~a~~~~~~~~~l~----------~  135 (394)
                      ++..+.||.|.-.+=-++|-+|+++..+ +.+.....|......+-+      .|++.+ .+.+-+|+.          .
T Consensus        72 ~~l~~~lr~AW~~lR~~hP~iA~~v~~d-~~~~~~~~Y~~~~~~~~~~~Wl~~Tf~v~~-~~~t~~e~~~~~~~~r~~~~  149 (519)
T 3fot_A           72 QNLKEMFELALLDARFEHPECACTVSWD-DEVPAIITYESPESNESARDWARGCIHVQP-TAKSALDLWSEMEEGRAAAN  149 (519)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGGCEEECC-SSSSCEEEEECCSSHHHHHHHHHHHEEEEE-CSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhhCCcceeEEeeC-CCCcccEEEecCCCHHHHHHHHHhcEEEeC-CCCCHHHHHHhhhhhhcccc
Confidence            3567778888887777899999999977 334555555322000101      255554 444444431          1


Q ss_pred             CC-CccccccCCCCCCCCCCCCCCceEEEEEEEeCCC--ceEEEEeeeeeeccchhHHHHHHHHHHHHhhhhhhhhhhhh
Q 042461          136 DG-ILEAAEYHPLVPQLSITEDKAEVIAIQITLFPNQ--GFSIGVSAHHAVLDGKSTTLFIKSWAYLCKQLKLQQQQQQQ  212 (394)
Q Consensus       136 ~~-p~~~~~~~~l~p~~~~~~~~~Pll~vQvt~~~~G--G~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~g~~~~~~~~~  212 (394)
                      .. |.....+.-+.|.   ...+.|        + .+  -.-|.+.+||.++||.|...|++.+-+......  ..+...
T Consensus       150 ~~~p~~~~~l~~v~~~---~~~~~~--------~-p~~~~~~lv~~~~H~~~DG~g~~~f~~~ll~~L~~~~--~~~~~~  215 (519)
T 3fot_A          150 DNTPSKSIELFLLSDV---STDSTP--------I-PQDATVEILFHSNHLFWDGIGCRKFVGDLFRLVGSYI--GRSDSR  215 (519)
T ss_dssp             -CCCCCSCEEEEEESS---SSTTSC--------C-CTTCEEEEEEEECGGGCCHHHHHHHHHHHHHHHTTST--TC-CGG
T ss_pred             cCCCccceEEEEEecc---cccccc--------C-CCCceEEEEEEeCceeEchHhHHHHHHHHHHHHHhhh--ccCCcc
Confidence            11 1100000000010   011111        3 24  467778899999999999999999877766310  000000


Q ss_pred             ccccCC-----CCCCCcccccccCCCCC-cchHh---HhhhhcCCCCCCcccccCCCCCCCCCCCceEEEEEeCHHHHHH
Q 042461          213 EQTYLP-----PELTPCFDRTVVKDPDG-IDLIY---LKHWMSGSSSNRRSLNVMPVKPENYYSNLVRMTFELNREDINK  283 (394)
Q Consensus       213 ~~~~~~-----~~~~P~~dr~~l~~p~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~l~~  283 (394)
                      +...+.     ..+.|... +.+..|.. .....   ..++..........+.++.  ...+ .......+.|+++..++
T Consensus       216 ~~~~~~~g~E~~~L~P~~e-~~~~~p~~~~~~e~~~~~~~~~~~~~~~~~~~~~P~--~~~~-~~~~~~~~~ls~~~t~~  291 (519)
T 3fot_A          216 EMKKIQWGQEIKNLSPPVV-DSLKLDINTLGSEFDDKCTEYTSALVANYKSRGMKF--QPGL-ALPRCVIHKLSADESID  291 (519)
T ss_dssp             GSCCCCTTTTGGGSCCCTG-GGBSSCGGGCCHHHHHHHHHHHHHHHHHHHSCCSBC--CCCC-CCEEEEEEECCHHHHHH
T ss_pred             CCCcCCCCcccccCCcCHH-HHhCCCCCCCCHHHHHHHHHHHHHhhcCCCcccCCC--CCCC-CCcceEEEEcCHHHHHH
Confidence            000010     00111110 11111111 11000   1111100000000111111  0111 23345788999999999


Q ss_pred             HHHHHHhhhccCCCCCCcccHHHHHHHHHHHHHHhhcc---CCCCceEEEEEEeecCCCCCCCCCCCCcccccccceeee
Q 042461          284 LRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKARD---VEANTTVRFVITTDCRSRLDPPIPANYFGNCTGGEFGEA  360 (394)
Q Consensus       284 Lk~~a~~~~~~~~~~~~~~St~d~L~AllW~~~~rAr~---~~~~~~~~l~~~vd~R~rl~pplp~~Y~GN~v~~~~~~~  360 (394)
                      |++.|....      ++.+|-+.+|.|.+-.++.+...   ........+..+||+|+++.++.-.+|+|.++.......
T Consensus       292 L~~~ck~~~------~~g~Tvt~~l~Aa~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~l~~~~~~n~~~~~~~~~~~~v  365 (519)
T 3fot_A          292 IVKAVKTRL------GPGFTISHLTQAAIVLALLDHLKPNDLSDDEVFISPTSVDGRRWLREDIASNFYAMCQTAAVVRI  365 (519)
T ss_dssp             HHHHHHHHT------CTTCCHHHHHHHHHHHHHHHHC----CCTTCCEEEEEEEECGGGBCHHHHTSCCSCCEEEEEEEE
T ss_pred             HHHHHHhcC------CCCeeHHHHHHHHHHHHHHhhcCCcccCCCccEEEEeeeeccccCCCcccccccceeeeeeeeEe
Confidence            999999874      35689999998777666665321   112346789999999999976655688888877655544


Q ss_pred             ec-cc---------ccccCcHHHHHHHHHHHHhh-hhhhhhc
Q 042461          361 KA-SG---------FMQENGFAFVAHKLSDLIKG-IKRCCSR  391 (394)
Q Consensus       361 ~~-~~---------l~~~~~L~~~A~~IR~ai~~-v~~~~~r  391 (394)
                      +. ..         +..+..+.+++..+++.... .++.|++
T Consensus       366 ~~i~~~~~~~~~~e~~~~~~~~~~ar~l~~~y~~~~~np~i~  407 (519)
T 3fot_A          366 ENLKSITVSHKDEKELQVRALESACRNIKKSYRQWLENPFLQ  407 (519)
T ss_dssp             CCGGGGCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTCTTHH
T ss_pred             cCccccccccchhhhhhHhHHHHHHHHHHHHhhcccCCchHH
Confidence            22 11         11100146667777666655 3444544


No 13 
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=76.86  E-value=1.6  Score=38.13  Aligned_cols=45  Identities=29%  Similarity=0.418  Sum_probs=33.0

Q ss_pred             CCceEEEEEEEeCCCc--eEEEEeeeeeeccchhHHHHHHHHHHHHh
Q 042461          157 KAEVIAIQITLFPNQG--FSIGVSAHHAVLDGKSTTLFIKSWAYLCK  201 (394)
Q Consensus       157 ~~Pll~vQvt~~~~GG--~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r  201 (394)
                      ..|++.+--..-+.|.  +-|++++||.++||.-...|++.+.+.+.
T Consensus       163 ~~PIi~~G~~~~~~~~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le  209 (213)
T 3cla_A          163 FAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCN  209 (213)
T ss_dssp             CSCEEEEECCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHT
T ss_pred             cccEEEeeEEEEECCeEEEEEEEEEcccccChHHHHHHHHHHHHHHH
Confidence            4588864222221233  67899999999999999999999988654


No 14 
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=75.73  E-value=1.8  Score=37.95  Aligned_cols=44  Identities=18%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             CCceEEEEEEEeCCCc--eEEEEeeeeeeccchhHHHHHHHHHHHH
Q 042461          157 KAEVIAIQITLFPNQG--FSIGVSAHHAVLDGKSTTLFIKSWAYLC  200 (394)
Q Consensus       157 ~~Pll~vQvt~~~~GG--~iL~~~~~H~v~Dg~g~~~fl~~WA~~~  200 (394)
                      ..|++.+=-..-+.|.  +-|++++||.++||.-...|++.+.+.+
T Consensus       171 ~~PIi~~Gk~~~~~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l  216 (217)
T 2i9d_A          171 NYPLLNAGKAIIREGRLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL  216 (217)
T ss_dssp             SSCEEEECCCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred             eEEEEecceEEEECCcEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence            4588753211111233  5789999999999999999999998764


No 15 
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=75.38  E-value=1.8  Score=37.91  Aligned_cols=44  Identities=20%  Similarity=0.354  Sum_probs=33.2

Q ss_pred             CceEEEEEEEeCCCc--eEEEEeeeeeeccchhHHHHHHHHHHHHh
Q 042461          158 AEVIAIQITLFPNQG--FSIGVSAHHAVLDGKSTTLFIKSWAYLCK  201 (394)
Q Consensus       158 ~Pll~vQvt~~~~GG--~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r  201 (394)
                      .|++.+--..-+.|.  +-|++++||.++||.-...|++.+.+.+.
T Consensus       168 ~pIi~~G~~~~~~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le  213 (219)
T 1q23_A          168 APVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCD  213 (219)
T ss_dssp             SCEEEECCCEEETTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEecccEEEECCcEEEEEEEEEEchhhChHHHHHHHHHHHHHHh
Confidence            577764322222233  67899999999999999999999998776


No 16 
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=73.68  E-value=2.2  Score=37.98  Aligned_cols=29  Identities=21%  Similarity=0.414  Sum_probs=27.2

Q ss_pred             eEEEEeeeeeeccchhHHHHHHHHHHHHh
Q 042461          173 FSIGVSAHHAVLDGKSTTLFIKSWAYLCK  201 (394)
Q Consensus       173 ~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r  201 (394)
                      +-|+++++|.++||.-...|++.|.+.+.
T Consensus       204 m~lsls~DHRviDGa~aa~Fl~~lk~~le  232 (239)
T 3b8k_A          204 MSVTLSCDHRVVDGAVGAQWLAEFRKYLE  232 (239)
T ss_dssp             EEEEECCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcceeechHHHHHHHHHHHHHHh
Confidence            78999999999999999999999998776


No 17 
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=72.37  E-value=2.4  Score=37.85  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=27.0

Q ss_pred             eEEEEeeeeeeccchhHHHHHHHHHHHHh
Q 042461          173 FSIGVSAHHAVLDGKSTTLFIKSWAYLCK  201 (394)
Q Consensus       173 ~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r  201 (394)
                      +-|+++++|.++||.-...|++.|.+.+.
T Consensus       208 m~lsls~DHRviDGa~aa~Fl~~lk~~le  236 (243)
T 1dpb_A          208 LPLSLSYDCRVINGAAAARFTKRLGDLLA  236 (243)
T ss_dssp             EEEEEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECcccccHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999998776


No 18 
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=72.20  E-value=2.4  Score=37.52  Aligned_cols=29  Identities=21%  Similarity=0.402  Sum_probs=26.9

Q ss_pred             eEEEEeeeeeeccchhHHHHHHHHHHHHh
Q 042461          173 FSIGVSAHHAVLDGKSTTLFIKSWAYLCK  201 (394)
Q Consensus       173 ~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r  201 (394)
                      +-|+++++|.++||.-...|++.+.+.+.
T Consensus       196 m~lsls~DHRviDGa~aa~Fl~~lk~~le  224 (233)
T 1scz_A          196 MYLALSYDHRLIDGRESVGFLVTIKELLE  224 (233)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcceeechHHHHHHHHHHHHHHh
Confidence            66999999999999999999999998776


No 19 
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=72.06  E-value=2.1  Score=37.68  Aligned_cols=29  Identities=24%  Similarity=0.428  Sum_probs=26.8

Q ss_pred             eEEEEeeeeeeccchhHHHHHHHHHHHHh
Q 042461          173 FSIGVSAHHAVLDGKSTTLFIKSWAYLCK  201 (394)
Q Consensus       173 ~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r  201 (394)
                      +-|+++++|.+.||.-...|++.|.+...
T Consensus       187 m~lsls~DHRviDGa~aa~Fl~~l~~~le  215 (224)
T 3rqc_A          187 MYLSLSCDHRLIDGAVATRFIVDLKKVIE  215 (224)
T ss_dssp             CCEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEeccceecHHHHHHHHHHHHHHHh
Confidence            55899999999999999999999998876


No 20 
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=71.09  E-value=2.6  Score=38.03  Aligned_cols=29  Identities=24%  Similarity=0.540  Sum_probs=26.9

Q ss_pred             eEEEEeeeeeeccchhHHHHHHHHHHHHh
Q 042461          173 FSIGVSAHHAVLDGKSTTLFIKSWAYLCK  201 (394)
Q Consensus       173 ~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r  201 (394)
                      +-|+++++|.++||.-...|++.|.+.+.
T Consensus       224 m~lsls~DHRviDGa~aa~Fl~~lk~~Le  252 (262)
T 2ii3_A          224 MNVSWSADHRIIDGATVSRFSNLWKSYLE  252 (262)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEECcceecHHHHHHHHHHHHHHHh
Confidence            56999999999999999999999998876


No 21 
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=67.57  E-value=5.1  Score=27.38  Aligned_cols=38  Identities=11%  Similarity=0.090  Sum_probs=30.8

Q ss_pred             chHHHHHHHHHHHhhhhcCCCceEecCCCCCCcEEEEc
Q 042461           73 EILPQLKHSLSLALLHYLPLAGHIMWPELEPKPAVYYF  110 (394)
Q Consensus        73 ~~~~~Lk~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~  110 (394)
                      +.++.++++|...+.+-..+||.+...-+++.++|+..
T Consensus        10 ddleafekalkemirqarkfagtvtytldgndleirit   47 (85)
T 2kl8_A           10 DDLEAFEKALKEMIRQARKFAGTVTYTLDGNDLEIRIT   47 (85)
T ss_dssp             SSHHHHHHHHHHHHHHHTTTTCEEEEEECSSCEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHHHhhcceEEEEecCCeeEEEEe
Confidence            45888999999999999999999986433367888875


No 22 
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=65.98  E-value=3.9  Score=36.74  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=26.9

Q ss_pred             eEEEEeeeeeeccchhHHHHHHHHHHHHh
Q 042461          173 FSIGVSAHHAVLDGKSTTLFIKSWAYLCK  201 (394)
Q Consensus       173 ~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r  201 (394)
                      +-|+++++|.|.||.-...|++.|.+...
T Consensus       210 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le  238 (256)
T 3mae_A          210 VNLCLSIDHRILDGLLAGKFLQAIKANVE  238 (256)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEccccccHHHHHHHHHHHHHHHh
Confidence            45999999999999999999999999877


No 23 
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=64.56  E-value=4.3  Score=36.30  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=27.5

Q ss_pred             eEEEEeeeeeeccchhHHHHHHHHHHHHhh
Q 042461          173 FSIGVSAHHAVLDGKSTTLFIKSWAYLCKQ  202 (394)
Q Consensus       173 ~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~  202 (394)
                      +-|+++++|.|.||.-...|++.|.+....
T Consensus       205 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~  234 (250)
T 3l60_A          205 MTLTCVFDHRVVDGAQVAQFMCELRDLIES  234 (250)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHHHS
T ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999998873


No 24 
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=54.07  E-value=16  Score=28.23  Aligned_cols=38  Identities=13%  Similarity=0.150  Sum_probs=31.0

Q ss_pred             chHHHHHHHHHHHhhhhcCCCceEecCCCCCCcEEEEc
Q 042461           73 EILPQLKHSLSLALLHYLPLAGHIMWPELEPKPAVYYF  110 (394)
Q Consensus        73 ~~~~~Lk~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~  110 (394)
                      ++.+.|+++|...+.+-..+||.+...-++++++|...
T Consensus        92 ddlea~ekalkemirqarkfagtvtytl~gn~l~i~it  129 (170)
T 4hhu_A           92 DDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVIT  129 (170)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEe
Confidence            34889999999999999999999986433467888874


No 25 
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=53.37  E-value=11  Score=19.97  Aligned_cols=20  Identities=15%  Similarity=0.079  Sum_probs=16.4

Q ss_pred             CCcccHHHHHHHHHHHHHHh
Q 042461          299 AQYLSSFVITCAHVFVWLVK  318 (394)
Q Consensus       299 ~~~~St~d~L~AllW~~~~r  318 (394)
                      ++-+++.|-|+-|+|+++..
T Consensus         5 psvftsqdylsdhlwralna   24 (26)
T 2xl1_A            5 PSVFTSQDYLSDHLWRALNA   24 (26)
T ss_pred             CceeecHHHHHHHHHHHHhc
Confidence            34578899999999998763


No 26 
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=50.86  E-value=16  Score=28.23  Aligned_cols=96  Identities=17%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             hHHHHHHHHHHHhhhhcCCCceEecCCCCCCcEEEEcCCCCCCCeEEEEEeecCCccccccCCCCccccccCCCCCCCCC
Q 042461           74 ILPQLKHSLSLALLHYLPLAGHIMWPELEPKPAVYYFPDQKCDGVSFVVAESSDADFDRVSGDGILEAAEYHPLVPQLSI  153 (394)
Q Consensus        74 ~~~~Lk~sL~~~L~~~p~LaGrl~~~~~~g~~~i~~~~~~~~~gv~f~~a~~~~~~~~~l~~~~p~~~~~~~~l~p~~~~  153 (394)
                      +.+.|+++|...+.+-..+||.+...-++++++|...      ||+-.+.       .+|..+..+-..++         
T Consensus        12 dlea~ekalkemirqarkfagtvtytl~gn~l~i~it------gvpeqvr-------kelakeaerl~~ef---------   69 (170)
T 4hhu_A           12 DLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVIT------GVPEQVR-------KELAKEAERLKAEF---------   69 (170)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEE------SCCHHHH-------HHHHHHHHHHHHHH---------
T ss_pred             cHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEe------CCcHHHH-------HHHHHHHHHHHHhc---------
Confidence            3789999999999999999999986433367888874      3321111       12221100000111         


Q ss_pred             CCCCCceEEEEEEEeCCCceEEEEeeeeeeccchhHHHHHHHHHHHHhh
Q 042461          154 TEDKAEVIAIQITLFPNQGFSIGVSAHHAVLDGKSTTLFIKSWAYLCKQ  202 (394)
Q Consensus       154 ~~~~~Pll~vQvt~~~~GG~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~  202 (394)
                            -+.+|.+.+..|.=++-     .++.|--+-.|=+++-+..|.
T Consensus        70 ------ni~v~y~imgsgsgvm~-----i~f~gddlea~ekalkemirq  107 (170)
T 4hhu_A           70 ------NINVQYQIMGSGSGVMV-----IVFEGDDLEALEKALKEMIRQ  107 (170)
T ss_dssp             ------TCEEEEEEECTTCCEEE-----EEEECSCHHHHHHHHHHHHHH
T ss_pred             ------ceEEEEEEEeCCceEEE-----EEEecCcHHHHHHHHHHHHHH
Confidence                  14577787754433322     345677778888888888884


No 27 
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=46.99  E-value=4  Score=39.58  Aligned_cols=29  Identities=17%  Similarity=0.332  Sum_probs=0.0

Q ss_pred             eEEEEeeeeeeccchhHHHHHHHHHHHHh
Q 042461          173 FSIGVSAHHAVLDGKSTTLFIKSWAYLCK  201 (394)
Q Consensus       173 ~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r  201 (394)
                      +-|+++++|.++||.-...|++.|.+.+.
T Consensus       391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le  419 (428)
T 3dva_I          391 LALSLSFDHRMIDGATAQKALNHIKRLLS  419 (428)
T ss_dssp             -----------------------------
T ss_pred             EEEEEEecccccchHHHHHHHHHHHHHHh
Confidence            35999999999999999999999988876


No 28 
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=42.42  E-value=54  Score=20.96  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             EEEEEeCHHHHHHHHHHHHhhhc
Q 042461          271 RMTFELNREDINKLRDKVNEVLY  293 (394)
Q Consensus       271 ~~~f~f~~~~l~~Lk~~a~~~~~  293 (394)
                      ...|+|++++-+.|++.|.++..
T Consensus         3 ~Vs~Y~SkEey~~L~klA~eE~e   25 (55)
T 1x93_A            3 AVSLYFSDEQYQKLEKMANEEEE   25 (55)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTTS
T ss_pred             eEEEEecHHHHHHHHHHHHHHHH
Confidence            56899999999999999998753


No 29 
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=29.31  E-value=1.3e+02  Score=20.01  Aligned_cols=42  Identities=21%  Similarity=0.194  Sum_probs=31.4

Q ss_pred             CCceEEEEEeCHHHHHHHHHHHHhhhccCCCCCCcccHHHHHHHHHHHHHHhhcc
Q 042461          267 SNLVRMTFELNREDINKLRDKVNEVLYSTQGGAQYLSSFVITCAHVFVWLVKARD  321 (394)
Q Consensus       267 ~~~~~~~f~f~~~~l~~Lk~~a~~~~~~~~~~~~~~St~d~L~AllW~~~~rAr~  321 (394)
                      .+.....|+|++++-+.|.+.|.++..             .+..+|=|.|.++..
T Consensus        13 k~~~~Vs~Y~SkEey~~L~klA~eE~e-------------SV~sfIKR~IlK~l~   54 (66)
T 2k1o_A           13 KRNFSVTFYLSKEEHDVLRRLADEEVE-------------SVNSFVKRHILKTII   54 (66)
T ss_dssp             CCCEEEEEEEEHHHHHHHHHHHHTTCS-------------CHHHHHHHHHHHHHC
T ss_pred             ccceEEEEEecHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
Confidence            445678899999999999999987753             245566677766654


No 30 
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=23.38  E-value=43  Score=36.58  Aligned_cols=30  Identities=13%  Similarity=0.323  Sum_probs=27.4

Q ss_pred             eEEEEeeeeeeccchhHHHHHHHHHHHHhh
Q 042461          173 FSIGVSAHHAVLDGKSTTLFIKSWAYLCKQ  202 (394)
Q Consensus       173 ~iL~~~~~H~v~Dg~g~~~fl~~WA~~~r~  202 (394)
                      +-|+++++|.|.||.-...|++.+.+.+..
T Consensus       192 m~lsls~DHRviDGa~aa~FL~~lk~~Le~  221 (1113)
T 2xt6_A          192 ITLTSTYDHRIIQGAESGDFLRTIHQLLLD  221 (1113)
T ss_dssp             EEEEEEEETTTCCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEEECcceechHHHHHHHHHHHHHHhC
Confidence            779999999999999999999999888763


Done!