Your job contains 1 sequence.
>042463
KFKQTQSYRSEDKSQKFSPFLGLNFYRIEYEFNMMWKKQAEFIWLSSIRHYSRISPPRPA
VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHWGRQCHVTAVSWVKYYFDEVQ
DSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRIS
KRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAA
LSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMY
QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI
NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPY
KLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKI
SWNLMSSYLV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042463
(490 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2037593 - symbol:AT1G78910 species:3702 "Arabi... 1673 3.8e-172 1
TAIR|locus:2090689 - symbol:AT3G19440 species:3702 "Arabi... 635 3.8e-62 1
DICTYBASE|DDB_G0285543 - symbol:DDB_G0285543 species:4468... 209 4.4e-30 3
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 259 5.5e-28 2
UNIPROTKB|E1BYI6 - symbol:RPUSD4 "Uncharacterized protein... 249 2.1e-19 1
MGI|MGI:1919239 - symbol:Rpusd4 "RNA pseudouridylate synt... 197 6.9e-13 1
ZFIN|ZDB-GENE-040801-238 - symbol:zgc:92006 "zgc:92006" s... 195 9.7e-13 1
UNIPROTKB|Q5E9Z1 - symbol:RPUSD4 "RNA pseudouridylate syn... 194 1.5e-12 1
RGD|1311268 - symbol:Rpusd4 "RNA pseudouridylate synthase... 194 1.5e-12 1
UNIPROTKB|Q96CM3 - symbol:RPUSD4 "RNA pseudouridylate syn... 189 5.6e-12 1
UNIPROTKB|F1S6H1 - symbol:LOC100737111 "Uncharacterized p... 188 7.3e-12 1
UNIPROTKB|E2R2N3 - symbol:RPUSD4 "Uncharacterized protein... 181 2.0e-11 1
UNIPROTKB|F6XEH2 - symbol:RPUSD4 "Uncharacterized protein... 184 2.1e-11 1
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 136 1.1e-10 2
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 119 3.2e-10 2
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 119 3.2e-10 2
UNIPROTKB|E9PML2 - symbol:RPUSD4 "RNA pseudouridylate syn... 129 5.8e-10 2
UNIPROTKB|P0AA37 - symbol:rluA species:83333 "Escherichia... 119 6.3e-10 2
UNIPROTKB|F1MN91 - symbol:RPUSD3 "RNA pseudouridylate syn... 162 4.9e-09 1
UNIPROTKB|J9NWF9 - symbol:RPUSD3 "Uncharacterized protein... 159 1.1e-08 1
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 155 2.1e-08 1
UNIPROTKB|Q2TBK7 - symbol:RPUSD3 "RNA pseudouridylate syn... 156 2.3e-08 1
TIGR_CMR|CPS_2290 - symbol:CPS_2290 "ribosomal large subu... 110 4.5e-08 2
RGD|1304934 - symbol:Rpusd1 "RNA pseudouridylate synthase... 150 8.0e-08 1
UNIPROTKB|F1RG52 - symbol:RPUSD1 "Uncharacterized protein... 150 8.5e-08 1
MGI|MGI:1919186 - symbol:Rpusd1 "RNA pseudouridylate synt... 147 1.8e-07 1
UNIPROTKB|Q17QT4 - symbol:RPUSD1 "RNA pseudouridylate syn... 147 1.8e-07 1
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 144 3.8e-07 1
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 143 4.8e-07 1
UNIPROTKB|Q4KFS5 - symbol:rluC "Pseudouridine synthase" s... 127 5.2e-07 2
UNIPROTKB|Q6P087 - symbol:RPUSD3 "RNA pseudouridylate syn... 142 9.1e-07 1
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 140 1.0e-06 1
UNIPROTKB|Q9KN61 - symbol:VC_A0104 "Pseudouridine synthas... 135 1.2e-06 1
TIGR_CMR|VC_A0104 - symbol:VC_A0104 "ribosomal large subu... 135 1.2e-06 1
TIGR_CMR|CPS_3649 - symbol:CPS_3649 "tRNA pseudouridine s... 111 1.7e-06 2
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 138 1.8e-06 1
UNIPROTKB|Q9KP71 - symbol:rluA "Ribosomal large subunit p... 99 2.0e-06 2
TIGR_CMR|VC_2505 - symbol:VC_2505 "ribosomal large subuni... 99 2.0e-06 2
ZFIN|ZDB-GENE-060929-444 - symbol:rpusd1 "RNA pseudouridy... 137 2.1e-06 1
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 98 2.4e-06 2
UNIPROTKB|F1SQE3 - symbol:RPUSD3 "Uncharacterized protein... 138 2.5e-06 1
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 137 2.7e-06 1
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 95 3.7e-06 2
UNIPROTKB|P0AA41 - symbol:truC species:83333 "Escherichia... 132 5.6e-06 1
UNIPROTKB|E2R7K0 - symbol:RPUSD1 "Uncharacterized protein... 130 1.4e-05 1
CGD|CAL0002400 - symbol:orf19.3177 species:5476 "Candida ... 99 1.5e-05 2
UNIPROTKB|Q9UJJ7 - symbol:RPUSD1 "RNA pseudouridylate syn... 130 1.5e-05 1
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 128 2.4e-05 1
MGI|MGI:2141440 - symbol:Rpusd3 "RNA pseudouridylate synt... 128 3.2e-05 1
TIGR_CMR|NSE_0146 - symbol:NSE_0146 "ribosomal large subu... 100 6.3e-05 2
FB|FBgn0032256 - symbol:RluA-2 "RluA-2" species:7227 "Dro... 101 8.1e-05 2
UNIPROTKB|Q9KTL4 - symbol:truC "tRNA pseudouridine syntha... 120 0.00011 1
TIGR_CMR|VC_0888 - symbol:VC_0888 "pseudouridine synthase... 120 0.00011 1
UNIPROTKB|E1C0L7 - symbol:RPUSD1 "Uncharacterized protein... 120 0.00012 1
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 87 0.00015 2
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 87 0.00016 2
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 87 0.00016 2
TIGR_CMR|SPO_3392 - symbol:SPO_3392 "ribosomal large subu... 117 0.00016 1
DICTYBASE|DDB_G0280463 - symbol:DDB_G0280463 "Ribosomal l... 84 0.00018 3
UNIPROTKB|H3BSG4 - symbol:RPUSD1 "RNA pseudouridylate syn... 110 0.00037 1
UNIPROTKB|H3BMZ6 - symbol:RPUSD1 "RNA pseudouridylate syn... 110 0.00050 1
UNIPROTKB|H3BQN8 - symbol:RPUSD1 "RNA pseudouridylate syn... 110 0.00054 1
>TAIR|locus:2037593 [details] [associations]
symbol:AT1G78910 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0003723 EMBL:AC005679
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
EMBL:AK176219 EMBL:BT015880 EMBL:BT020453 IPI:IPI00517933
IPI:IPI00929952 PIR:F96818 RefSeq:NP_178012.2 UniGene:At.45151
UniGene:At.50046 ProteinModelPortal:Q5XET6 SMR:Q5XET6 STRING:Q5XET6
PRIDE:Q5XET6 EnsemblPlants:AT1G78910.1 GeneID:844229
KEGG:ath:AT1G78910 TAIR:At1g78910 HOGENOM:HOG000242909
InParanoid:Q5XET6 OMA:LNKPPKV PhylomeDB:Q5XET6
ProtClustDB:CLSN2680811 Genevestigator:Q5XET6 Uniprot:Q5XET6
Length = 478
Score = 1673 (594.0 bits), Expect = 3.8e-172, P = 3.8e-172
Identities = 328/480 (68%), Positives = 385/480 (80%)
Query: 35 MWKKQAEF--IWLSS-IRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFP 91
MWK + F I+L+ IR YSR++PP +VIRV+ VAHLGPPK GP PRQL+SLPPFP
Sbjct: 1 MWKAKTCFRQIYLTVLIRRYSRVAPPPSSVIRVTNN-VAHLGPPKQGPLPRQLISLPPFP 59
Query: 92 GHNLPGKHWGRQC-------HVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSF 144
GH LPGK+ G HVTA+SWVKYYF+E+ D IQ+HF KGLVQME D+
Sbjct: 60 GHPLPGKNAGADGDDGDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDAS 119
Query: 145 VEQ--GQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLR 202
E+ G + P+RKIK NEVM+ G +I+LPVS+ E RISKRYDTIPSGTL PNADEI YL+
Sbjct: 120 REKEDGAI-PMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQ 178
Query: 203 RLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESSGL 262
RLV+++DSAI+VLNKPPK+P+KG++P+HNSMD S+ +EGP+LVHRLDRE+SGL
Sbjct: 179 RLVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGL 238
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L+MGRTKES+ L +FSD S KAWN ACEAMYQ+YWALVIGSPKEK+G+I APL
Sbjct: 239 LVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPL 298
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
SKVLLDDGKT+R++LAQ SG EASQ+A+TEY+VLGP INGCSW+ELRP+T RKHQLRVHC
Sbjct: 299 SKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHC 358
Query: 383 AEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLL 442
AEALGTPIVGDYKYGWFVH+RWKQMP+VDIEPT+GKPYKLRRP+GLDVQKGSVLSKVPLL
Sbjct: 359 AEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLL 418
Query: 443 HLHCRELKSDNLFPTL------SSKP------DGPDLLRFVASMPSHMKISWNLMSSYLV 490
HLHCRE+ N+ L ++P D PDLLRFVASMPSHMKISWNLMSSYLV
Sbjct: 419 HLHCREMVLPNIAKFLHVMNQQETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 478
>TAIR|locus:2090689 [details] [associations]
symbol:AT3G19440 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB025624 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
HOGENOM:HOG000242909 EMBL:AK228911 EMBL:BT030392 IPI:IPI00521714
RefSeq:NP_188575.1 UniGene:At.38404 ProteinModelPortal:Q9LT72
SMR:Q9LT72 STRING:Q9LT72 PaxDb:Q9LT72 PRIDE:Q9LT72
EnsemblPlants:AT3G19440.1 GeneID:821478 KEGG:ath:AT3G19440
TAIR:At3g19440 InParanoid:Q9LT72 OMA:GEKMLCI PhylomeDB:Q9LT72
ProtClustDB:CLSN2684585 Genevestigator:Q9LT72 Uniprot:Q9LT72
Length = 477
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 146/388 (37%), Positives = 225/388 (57%)
Query: 107 TAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGA 166
TA+ W+ ++ +++Q F V+ E + D ++ Q ++++ E + G
Sbjct: 91 TALRWILRCRPDLPRTLVQKLFRLRQVRREMSMSVDG--DELQRSQLKRVAAKESLNVGD 148
Query: 167 RIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGH 226
RI+LP+S+ + + + + +E ++ LV Y+D AI+VLNKP + ++G
Sbjct: 149 RIYLPLSVDND--TPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGG 206
Query: 227 LPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSK 286
+ S+D +D +E P+LVHRLDR+ SGLL++ RT+ + ++L +F +
Sbjct: 207 SGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGA 266
Query: 287 SLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEAS 346
S + +++ ++Y ALVIG P ++G I APL KV++DDGK+ERI + N L ++
Sbjct: 267 SAYGVKKNV-KSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVST 325
Query: 347 QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQ 406
Q A+TEYRV+ +G +W+ELRPLT RKHQLRVHCAE LGTPIVGDYKYGW H+ +
Sbjct: 326 QHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREP 385
Query: 407 MPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTL-----SSK 461
+ PT + P GLD+ G V SK P LHLH +++ N+ L SS
Sbjct: 386 FVSSENNPTK----QSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSD 441
Query: 462 PDGPDL--LRFVASMPSHMKISWNLMSS 487
D DL L+F A +PSHM++S+NL+ S
Sbjct: 442 SDISDLDSLKFDAPLPSHMQLSFNLLKS 469
>DICTYBASE|DDB_G0285543 [details] [associations]
symbol:DDB_G0285543 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
dictyBase:DDB_G0285543 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
RefSeq:XP_638115.1 STRING:Q54N28 EnsemblProtists:DDB0186558
GeneID:8625163 KEGG:ddi:DDB_G0285543 InParanoid:Q54N28 OMA:WPETGRT
ProtClustDB:CLSZ2846710 Uniprot:Q54N28
Length = 718
Score = 209 (78.6 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 46/115 (40%), Positives = 70/115 (60%)
Query: 283 NKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG 342
N +K+ + + + + + YWAL+ +P K+G I APL KV++ G E+++ +G
Sbjct: 543 NNNKNKDEENENYSKGIKKTYWALLGSTPTPKEGRIRAPLKKVVV--GGFEKVVPTLTTG 600
Query: 343 LEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ ++ A+TEY+VL + +I L P T R HQLRVHCA L TPI+GD KYG
Sbjct: 601 -DGAKIAITEYKVLESSLTKHCFISLWPETGRTHQLRVHCASVLNTPIIGDPKYG 654
Score = 190 (71.9 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 50/169 (29%), Positives = 90/169 (53%)
Query: 113 KYYFDEVQDSVIQSHFNKGL-VQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLP 171
+Y +E ++ + NK L + ++ V Q+K K+K N+ ++ G+ I+ P
Sbjct: 339 EYEEEEYEEGEYEEEENKNLDLSKTTTTTKENKVNPVQLKR-HKLKFNDKVQVGSWIYFP 397
Query: 172 VSMV-EGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
++ + +I+ D P + EI +R V Y+D I+VLNKP + ++G ++
Sbjct: 398 AQVILDQQIADIKD--PQKYARLSDQEIKEIRESVLYKDEHIIVLNKPQGLSVQGGTGLN 455
Query: 231 NSMDXXXXXXXSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLF 279
+D ++ +E PKLVHRLDR +SG+L++GR+K + S +T F
Sbjct: 456 KHLDMMLSHLR-FEKDENPKLVHRLDRNTSGILILGRSKLAASAMTKKF 503
Score = 55 (24.4 bits), Expect = 4.4e-30, Sum P(3) = 4.4e-30
Identities = 32/131 (24%), Positives = 58/131 (44%)
Query: 4 QTQSYRSEDKSQKFSPFLGLNFYRIEYEFNMMWKKQAEFIWLSSIRHYSRISPPRPAVIR 63
+ Q + DK +K + ++F ++Y+ N K EF ++S+ + +SP + ++
Sbjct: 106 EIQKKKRSDKLKKTNE---VSFKHLDYKLNEDGK---EFN-INSLDKF--LSPQSKSKLK 156
Query: 64 VSEKKVAHLGPPKAGPK--PRQLLSLPPFPGHNLPGKHWGRQCHVTAVSWVKYYFD--EV 119
S K PK+ PK P+ L L NL G ++ + +K Y E
Sbjct: 157 SSSKSSTSKSSPKSSPKSSPKSLNFL-----ENLVGTKKSKK-EIEQEEILKKYEQMMES 210
Query: 120 QDSVIQSHFNK 130
+D I + FN+
Sbjct: 211 KDKPIYTDFNR 221
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 259 (96.2 bits), Expect = 5.5e-28, Sum P(2) = 5.5e-28
Identities = 85/276 (30%), Positives = 132/276 (47%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H +G ++ C G+ V+ + KP ++ E G ++ +P G +R + +
Sbjct: 28 HVGQGRIEKMCRK-GELRVDGARAKPATRL------EVGQQVRIPPLPAPG---ERPEPV 77
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYN 246
S + +A I R V +RD I+VLNKP + ++G +D + +
Sbjct: 78 KSRVSDSDAKLI---RACVLHRDDDIIVLNKPAGLAVQGGSGQTRHVDGLSEALR-FGND 133
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
E P+LVHRLD+++SG+L++ RT+E+ + LT F N K YWAL
Sbjct: 134 ENPRLVHRLDKDTSGVLVLARTREAAARLTAAFRHRNTRKI---------------YWAL 178
Query: 307 VIGSPKEKQGIIHAPLSKVLLDD--GKTERIILAQNSGLEAS---QEAMTEYRVLGPMIN 361
V G P G I L K G+ E++ + S L+A+ + A T Y L +
Sbjct: 179 VAGVPTPYLGEIKTGLVKAGGHGARGEGEKMNVVHLSELDATPGAKRAHTYYATLYRVAG 238
Query: 362 GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
SW+ + P+T R HQLR H A +G PI+GD KYG
Sbjct: 239 RASWVAMEPVTGRTHQLRAHMA-GIGHPIIGDGKYG 273
Score = 80 (33.2 bits), Expect = 5.5e-28, Sum P(2) = 5.5e-28
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 426 DGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWN 483
DG Q G ++SK LHLH R L ++ P+ K + F A +P HM+ SW+
Sbjct: 282 DGWGAQLGGIISKK--LHLHARSLSFEH--PSTRKK------VTFTAPLPEHMRESWD 329
>UNIPROTKB|E1BYI6 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 CTD:84881 OMA:SKARYIP
EMBL:AADN02042045 EMBL:AADN02042046 IPI:IPI00819761
RefSeq:XP_001231937.2 Ensembl:ENSGALT00000041115 GeneID:768808
KEGG:gga:768808 Uniprot:E1BYI6
Length = 354
Score = 249 (92.7 bits), Expect = 2.1e-19, P = 2.1e-19
Identities = 75/235 (31%), Positives = 119/235 (50%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYN---EGPKLVHRLDR 257
LR+ Y+D ++VLNKP +P+ G V N + N E L HRLD+
Sbjct: 84 LRQRAVYQDEEVVVLNKPYGLPVHGGPGVKNCIADVLPILAKMLVNMKAEPLHLCHRLDK 143
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ R KE+ + LF K++ + K YWA+ +GSP +GI
Sbjct: 144 ETTGVMVLARNKEAADRIRLLF----KTRQVEKI-----------YWAISVGSPDPAEGI 188
Query: 318 I-----------HAPLSKVLL--------DDGKTERIILAQNSGLEASQEAMTEYRVLGP 358
+ H P K+ L +DGK +I +N+ + A+T+YRVL
Sbjct: 189 VEIPMVEREVQSHQPHFKMTLAPNYRMSPEDGKVLKIRKNRNA-----ESAVTQYRVLAS 243
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIE 413
+ CS +EL+P+T KHQLRVH A LG PI+GD+KY + +++P + ++
Sbjct: 244 S-SACSLLELQPITGVKHQLRVHLAYGLGCPILGDHKYSHWSKLAPQKLPEITLK 297
>MGI|MGI:1919239 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain
containing 4" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
MGI:MGI:1919239 GO:GO:0005739 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 CTD:84881 HOVERGEN:HBG054698
HOGENOM:HOG000136349 OMA:SKARYIP OrthoDB:EOG4FFD2H EMBL:AK010322
EMBL:AK156574 EMBL:BC061256 IPI:IPI00109744 RefSeq:NP_082316.1
UniGene:Mm.273515 UniGene:Mm.474966 ProteinModelPortal:Q9CWX4
SMR:Q9CWX4 STRING:Q9CWX4 PhosphoSite:Q9CWX4 PRIDE:Q9CWX4
Ensembl:ENSMUST00000034543 GeneID:71989 KEGG:mmu:71989
UCSC:uc009otc.1 InParanoid:Q9CWX4 NextBio:335146 Bgee:Q9CWX4
CleanEx:MM_RPUSD4 Genevestigator:Q9CWX4 Uniprot:Q9CWX4
Length = 377
Score = 197 (74.4 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 78/312 (25%), Positives = 151/312 (48%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISK--RYDTIPSGTLNPNADEIDYLRRLVKYRDSAI 212
K++ + + + +P + V+ R+ + R+ T ++PN + RR++ ++D+ +
Sbjct: 49 KLRAQKQEQKAKEVRVPTNPVQRRVQELVRF-TQQLQRVHPNVLAKELSRRIL-HQDNDL 106
Query: 213 LVLNKPPKVPLKGHLPVHNSMDXXXXXXXS--YDYNEGP-KLVHRLDRESSGLLLMGRTK 269
+V+NKP +P+ G V + + + P L HRLD+E++G++++ K
Sbjct: 107 VVINKPYGLPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEK 166
Query: 270 ESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS-KVLLD 328
+ + LF +++ + K +YWA+ + P G++ P+ K +
Sbjct: 167 DMAHQVQELF----RTRQVEK-----------KYWAITVRVPLPSAGVVDIPIKEKEVQG 211
Query: 329 DGKTERIILAQNSGLE--------ASQEA---MTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ ++ L+ + L+ AS++A +T+Y+VL + + +EL+P+T KHQ
Sbjct: 212 PQQHHKMTLSPSYRLDNGKMVKVRASRDAHVAVTQYQVLSSA-SSSALVELQPVTGIKHQ 270
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LRVH + L PI+GD+KY W ++ + ++G KL GL K
Sbjct: 271 LRVHLSFGLDCPILGDHKYS-----DWTRLAPQKL--SAGTLKKL----GLQQSKARY-- 317
Query: 438 KVPLLHLHCREL 449
+PL HLH R+L
Sbjct: 318 -IPL-HLHARQL 327
>ZFIN|ZDB-GENE-040801-238 [details] [associations]
symbol:zgc:92006 "zgc:92006" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-040801-238 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 HOVERGEN:HBG054698 EMBL:BC078405
IPI:IPI00495929 RefSeq:NP_001003495.1 UniGene:Dr.79840
ProteinModelPortal:Q6DBR0 STRING:Q6DBR0 Ensembl:ENSDART00000020283
GeneID:445101 KEGG:dre:445101 HOGENOM:HOG000136349
InParanoid:Q6DBR0 OMA:SKARYIP OrthoDB:EOG4FFD2H NextBio:20831865
ArrayExpress:Q6DBR0 Bgee:Q6DBR0 Uniprot:Q6DBR0
Length = 358
Score = 195 (73.7 bits), Expect = 9.7e-13, P = 9.7e-13
Identities = 91/293 (31%), Positives = 141/293 (48%)
Query: 170 LPVSMVEGRISK-RYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLP 228
+PVS ++ R+++ + + +++P+ L R Y D I+ +NKP VPL
Sbjct: 56 VPVSPLQSRVNELKQFSQQLQSVHPSVFA-KALYRSSLYEDQNIIAINKPYDVPLHNING 114
Query: 229 VHNSMDXXXXXXXSYDYNEGP----KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVN- 283
+ NS+ N P L H+L++E++G+L++ +T+E+ + L
Sbjct: 115 IRNSIAECLPLLAKITDNMRPGSQLHLCHKLEKETTGVLILAKTEEAAEHVQTLIQSHKV 174
Query: 284 --KSKSLSKAWNDACEAMYQR--YWALVIG-SPKEKQGIIHAPLSKVLLD-DGKTERIIL 337
K +++ E + V+G P K + +PL KV D DG T +
Sbjct: 175 EMKYLAITVGVPVPSEGVIDIPVIERAVVGPQPHFKMAL--SPLFKVNEDGDGVTR--VR 230
Query: 338 AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
A + A+T Y+VL +GCS +EL+PLT K+QLRVH A AL PI+GD+KY
Sbjct: 231 AHRQ----AHAAVTRYQVLDNT-SGCSLVELQPLTGVKNQLRVHMALALTCPILGDHKYS 285
Query: 398 WFVHRRWKQM-PRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCREL 449
H W ++ P+ E T LRR GL VQ S +PL HLH R +
Sbjct: 286 ---H--WSKLAPQKLPEGT------LRRL-GL-VQ--SKTRYLPL-HLHSRRI 322
>UNIPROTKB|Q5E9Z1 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39
eggNOG:COG0564 GeneTree:ENSGT00530000063800 EMBL:BT020717
EMBL:BT020773 EMBL:BT020778 EMBL:BT021642 EMBL:BT021761
EMBL:BT025340 EMBL:BT025483 EMBL:BT026244 EMBL:BC134590
IPI:IPI00713333 RefSeq:NP_001015616.1 UniGene:Bt.31431
ProteinModelPortal:Q5E9Z1 Ensembl:ENSBTAT00000027843 GeneID:516934
KEGG:bta:516934 CTD:84881 HOVERGEN:HBG054698 InParanoid:Q5E9Z1
NextBio:20872338 Uniprot:Q5E9Z1
Length = 377
Score = 194 (73.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 75/243 (30%), Positives = 119/243 (48%)
Query: 171 PVSMVEGRISK--RYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLP 228
P + V+ R+ + R+ T ++PN L R + ++D ++V+NKP +P+ G
Sbjct: 65 PTNPVQRRVRELVRF-TEQLQRVHPNV-LAKALSRGIVHQDKELVVINKPYGLPVHGGPG 122
Query: 229 VHNSMDXXXXXXXSYDYNEGPK-----LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVN 283
V + + GPK L HRLD+E++G++++ KE + LF
Sbjct: 123 VKLCISDVLPVLAKILH--GPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQ 180
Query: 284 KSKSLSKAWNDACEAMYQRYWALVIGSP---KEKQGIIH---APLS-KVLLDDGKTERII 336
+K K W A V+ P KE QG H LS +DDGK R+
Sbjct: 181 VTK---KYWAITVRVPVPE--AGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVR 235
Query: 337 LAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
++N+ L A+T+Y+VL ++ + +EL+P+T KHQLRVH + L PI+GD+KY
Sbjct: 236 SSRNAQL-----AVTQYQVLSSSLSA-ALLELQPITGIKHQLRVHMSFGLDCPILGDHKY 289
Query: 397 G-W 398
W
Sbjct: 290 SDW 292
>RGD|1311268 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain containing 4"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 RGD:1311268 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00530000063800 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:BC098023 IPI:IPI00362584
RefSeq:NP_001020455.1 UniGene:Rn.232042 ProteinModelPortal:Q4QQT0
PRIDE:Q4QQT0 Ensembl:ENSRNOT00000015670 GeneID:315550
KEGG:rno:315550 UCSC:RGD:1311268 InParanoid:Q4QQT0 NextBio:669410
Genevestigator:Q4QQT0 Uniprot:Q4QQT0
Length = 377
Score = 194 (73.4 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 79/312 (25%), Positives = 150/312 (48%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISK--RYDTIPSGTLNPNADEIDYLRRLVKYRDSAI 212
K++ + + + +P + V+ R+ + R+ T ++PN + RR++ ++D +
Sbjct: 49 KLRAQKQEQKTKEMRVPTNPVQRRVQELVRF-TQQLQRVHPNVLAKELSRRIL-HQDKDL 106
Query: 213 LVLNKPPKVPLKGHLPVHNSMDXXXXXXXS--YDYNEGP-KLVHRLDRESSGLLLMGRTK 269
+V+NKP +P+ G V + + + P L HRLD+E++G++++ K
Sbjct: 107 VVINKPYGLPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEK 166
Query: 270 ESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL-SKVLLD 328
+ + LF +++ + K +YWA+ + P G++ P+ K +
Sbjct: 167 DMAHQVQELF----RTRQVEK-----------KYWAITVRVPLPSAGVVDIPIMEKEVAG 211
Query: 329 DGKTERIILA----QNSG----LEASQEA---MTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ ++ L ++G + AS++A +T+Y+VL + + +EL+P+T KHQ
Sbjct: 212 QQQHHKMTLRPSYRMDNGKMVKVRASRDAHVAVTQYQVLSSTPSS-ALVELQPVTGIKHQ 270
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LRVH A L PI+GD+KY W ++ + ++G KL GL K
Sbjct: 271 LRVHLAFGLDCPILGDHKYS-----DWNRLAPQKL--SAGTLKKL----GLQQSKARY-- 317
Query: 438 KVPLLHLHCREL 449
+PL HLH R+L
Sbjct: 318 -IPL-HLHARQL 327
>UNIPROTKB|Q96CM3 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0005739 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:AK027400 EMBL:BC014131 IPI:IPI00304069
RefSeq:NP_116184.2 UniGene:Hs.150458 ProteinModelPortal:Q96CM3
SMR:Q96CM3 STRING:Q96CM3 PhosphoSite:Q96CM3 DMDM:74731354
PaxDb:Q96CM3 PRIDE:Q96CM3 Ensembl:ENST00000298317 GeneID:84881
KEGG:hsa:84881 UCSC:uc001qde.3 GeneCards:GC11M126071
HGNC:HGNC:25898 HPA:HPA039689 neXtProt:NX_Q96CM3
PharmGKB:PA134875000 InParanoid:Q96CM3 PhylomeDB:Q96CM3
GenomeRNAi:84881 NextBio:75193 ArrayExpress:Q96CM3 Bgee:Q96CM3
CleanEx:HS_RPUSD4 Genevestigator:Q96CM3 Uniprot:Q96CM3
Length = 377
Score = 189 (71.6 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 75/259 (28%), Positives = 125/259 (48%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXS--YDYNEGP-KLVHRLDR 257
L R + ++D ++V+NKP +P+ G V + + + P L HRLD+
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDK 154
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSP---KEK 314
E++G++++ K+ + LF + + K W A A V+ P KE
Sbjct: 155 ETTGVMVLAWDKDMAHQVQELF---RTRQVVKKYW--AITVHVPMPSAGVVDIPIVEKEA 209
Query: 315 QGII-HAPLS---KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
QG H ++ +DDGK ++ ++N+ Q A+T+Y+VL ++ + +EL+P
Sbjct: 210 QGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA-----QVAVTQYQVLSSTLSS-ALVELQP 263
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDV 430
+T KHQLRVH + L PI+GD+KY W ++ + + G KL GL+
Sbjct: 264 ITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTLKKL----GLEQ 312
Query: 431 QKGSVLSKVPLLHLHCREL 449
K +PL HLH R+L
Sbjct: 313 SKARY---IPL-HLHARQL 327
>UNIPROTKB|F1S6H1 [details] [associations]
symbol:LOC100737111 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP EMBL:CU466237
EMBL:FP102836 RefSeq:XP_003482691.1 Ensembl:ENSSSCT00000016599
Ensembl:ENSSSCT00000025330 GeneID:100737111 KEGG:ssc:100737111
Uniprot:F1S6H1
Length = 376
Score = 188 (71.2 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 85/292 (29%), Positives = 139/292 (47%)
Query: 170 LPVSMVEGRISK--RYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHL 227
+P + V+ R+ + R+ T ++PN L R + ++D +LV+NKP +P+ G
Sbjct: 63 VPTNPVQRRVRELVRF-TEQLQRVHPNV-LAKALSRGIVHQDKDLLVINKPYGLPVHGGP 120
Query: 228 PVHNSMDXXXXXXXS--YDYNEGP-KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNK 284
V + + + P L HRLD+E++G++++ KE + LF
Sbjct: 121 GVQLCISDVLPILAKILHGHKAEPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQV 180
Query: 285 SKSLSKAWNDACEAMYQRYWALVIGSP---KEKQGII-HAPLS---KVLLDDGKTERIIL 337
+K K W A A V+ P KE QG H ++ +D+GK R+
Sbjct: 181 AK---KYW--AITVRVPVPSAGVVDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVRVRT 235
Query: 338 AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
++N+ L A+T+Y+VL ++ + +EL+P+T KHQLRVH + L PI+GD+KY
Sbjct: 236 SRNAHL-----AVTQYQVLSSTLSS-ALLELQPVTGIKHQLRVHLSFGLDCPILGDHKYS 289
Query: 398 WFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCREL 449
W ++ + + G KL GL K +PL HLH R+L
Sbjct: 290 -----DWNRLAPQKL--SVGVLKKL----GLPQSKAR---HIPL-HLHARQL 326
>UNIPROTKB|E2R2N3 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Ensembl:ENSCAFT00000035707 Uniprot:E2R2N3
Length = 305
Score = 181 (68.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 69/267 (25%), Positives = 127/267 (47%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISK--RYDTIPSGTLNPNADEIDYLRRLVKYRDSAI 212
K++ + + + P S V+ R+ + R+ T ++PN L R V ++D +
Sbjct: 50 KLRAQKQEQKTKKQLAPTSPVQRRVHELVRF-TQQLQRVHPNV-LAKALSRGVLHQDKDL 107
Query: 213 LVLNKPPKVPLKGHLPVHNSMDXXXXXXXS--YDYNEGP-KLVHRLDRESSGLLLMGRTK 269
+V+NKP +P+ G V + + + P L HRLD+E++G++++ K
Sbjct: 108 VVINKPYGLPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEK 167
Query: 270 ESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS------ 323
E + F +++ ++K +YWA+ + P G++ P++
Sbjct: 168 EVAHQVQEFF----RTRQVAK-----------KYWAITVRVPVPSAGVVDIPITEKAVQG 212
Query: 324 -----KVLL------DDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
K+ L D+GK R+ +N+ + A+T+Y VL ++ + +EL+P+T
Sbjct: 213 QQQHYKMTLSPDYRMDNGKMVRVRSNRNAHI-----AVTQYHVLSSTLSS-ALVELQPIT 266
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYG-W 398
KHQLRVH + L PI+GD+KY W
Sbjct: 267 GIKHQLRVHLSFGLNCPILGDHKYSDW 293
>UNIPROTKB|F6XEH2 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP Ensembl:ENSCAFT00000035707
EMBL:AAEX03003379 ProteinModelPortal:F6XEH2 Uniprot:F6XEH2
Length = 378
Score = 184 (69.8 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 83/317 (26%), Positives = 146/317 (46%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISK--RYDTIPSGTLNPNADEIDYLRRLVKYRDSAI 212
K++ + + + P S V+ R+ + R+ T ++PN L R V ++D +
Sbjct: 50 KLRAQKQEQKTKKQLAPTSPVQRRVHELVRF-TQQLQRVHPNV-LAKALSRGVLHQDKDL 107
Query: 213 LVLNKPPKVPLKGHLPVHNSMDXXXXXXXS--YDYNEGP-KLVHRLDRESSGLLLMGRTK 269
+V+NKP +P+ G V + + + P L HRLD+E++G++++ K
Sbjct: 108 VVINKPYGLPVHGGPGVQLCISDVLPILAKMLHGHKAEPLHLCHRLDKETTGVMVLAWEK 167
Query: 270 ESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS------ 323
E + F +++ ++K +YWA+ + P G++ P++
Sbjct: 168 EVAHQVQEFF----RTRQVAK-----------KYWAITVRVPVPSAGVVDIPITEKAVQG 212
Query: 324 -----KVLL------DDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
K+ L D+GK R+ +N+ + A+T+Y VL ++ + +EL+P+T
Sbjct: 213 QQQHYKMTLSPDYRMDNGKMVRVRSNRNAHI-----AVTQYHVLSSTLSS-ALVELQPIT 266
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
KHQLRVH + L PI+GD+KY W ++ + + G KL GL K
Sbjct: 267 GIKHQLRVHLSFGLNCPILGDHKYS-----DWNKLAPQKL--SLGTLKKL----GLQQTK 315
Query: 433 GSVLSKVPLLHLHCREL 449
L PL HLH R+L
Sbjct: 316 ARHL---PL-HLHARQL 328
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 136 (52.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 40/103 (38%), Positives = 54/103 (52%)
Query: 301 QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
++Y LV G + + + PL K L G ER++ + G + A+T +R L +
Sbjct: 168 KQYLLLVKGQWQGGECRVEVPLKKNRLQSG--ERMVKVEKEG----KSAVTVFRPL-KIF 220
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 403
S IE +PLT R HQ+RVH A LG PI GD KYG V R
Sbjct: 221 EQASLIEAKPLTGRTHQIRVHAAH-LGYPIAGDEKYGDKVFNR 262
Score = 83 (34.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 34/130 (26%), Positives = 59/130 (45%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNP-NADE--IDYLRRLVKYRDS 210
R I+ EV R+ +V G + + + P DE + L + Y ++
Sbjct: 35 RAIRKGEVRVNKRRVGADYRLVVGDLVRIPPVQMAAPKKPATVDEKLLISLEMRILYEEA 94
Query: 211 AILVLNKPPKVPLKGHLPVHNSM-DXXXXXXXSYDYNEGPKLVHRLDRESSGLLLMGRTK 269
+LV++KP +P+ G + + + E LVHRLDRE+SG L++ + +
Sbjct: 95 DLLVIDKPAGLPVHGGSGIQGGVIEALRIMRPKVRLLE---LVHRLDRETSGCLMVAKKR 151
Query: 270 ES-VSLLTWL 278
+ V+L T L
Sbjct: 152 STLVALHTLL 161
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 119 (46.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 47/182 (25%), Positives = 88/182 (48%)
Query: 145 VEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRR 203
+ +G+++ +K +K +E G + +P VE + + PS L+ A+ L
Sbjct: 42 LRKGEVRVNKKRVKAEYKLEAGDVVRVPPVTVE--VKENEPAPPSTKLSKVAE----LEH 95
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDXXXXXXXSYDYNEGPKLVHRLDRESSGL 262
+ Y D +L+LNKP + G +H +++ + E LVHR+DR++SG+
Sbjct: 96 CIVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGI 152
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
LL+ + + ++ L F + K++ K Y Y+ALV+G + +++APL
Sbjct: 153 LLVAKKRSALRHLQAQF----REKTVQK---------Y--YYALVMGHWDAECKVVNAPL 197
Query: 323 SK 324
K
Sbjct: 198 LK 199
Score = 98 (39.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
Y+ALV+G + +++APL K + I+ +G + + T +R+L
Sbjct: 178 YYALVMGHWDAECKVVNAPLLK-----NEVNSIVRVNPNG----KPSETRFRILEKFAEA 228
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ ++ P+T R HQ+RVH + +G PI D +YG
Sbjct: 229 -TLVQASPVTGRTHQIRVH-TQYMGHPIAWDDRYG 261
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 119 (46.9 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 47/182 (25%), Positives = 88/182 (48%)
Query: 145 VEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRR 203
+ +G+++ +K +K +E G + +P VE + + PS L+ A+ L
Sbjct: 42 LRKGEVRVNKKRVKAEYKLEAGDVVRVPPVTVE--VKENEPAPPSTKLSKVAE----LEH 95
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDXXXXXXXSYDYNEGPKLVHRLDRESSGL 262
+ Y D +L+LNKP + G +H +++ + E LVHR+DR++SG+
Sbjct: 96 CIVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGI 152
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
LL+ + + ++ L F + K++ K Y Y+ALV+G + +++APL
Sbjct: 153 LLVAKKRSALRHLQAQF----REKTVQK---------Y--YYALVMGHWDAECKVVNAPL 197
Query: 323 SK 324
K
Sbjct: 198 LK 199
Score = 98 (39.6 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 28/95 (29%), Positives = 49/95 (51%)
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
Y+ALV+G + +++APL K + I+ +G + + T +R+L
Sbjct: 178 YYALVMGHWDAECKVVNAPLLK-----NEVNSIVRVNPNG----KPSETRFRILEKFAEA 228
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ ++ P+T R HQ+RVH + +G PI D +YG
Sbjct: 229 -TLVQASPVTGRTHQIRVH-TQYMGHPIAWDDRYG 261
>UNIPROTKB|E9PML2 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 CTD:84881
UniGene:Hs.150458 GeneID:84881 KEGG:hsa:84881 HGNC:HGNC:25898
GenomeRNAi:84881 NextBio:75193 EMBL:AP001893 IPI:IPI00921381
RefSeq:NP_001138299.1 ProteinModelPortal:E9PML2 SMR:E9PML2
Ensembl:ENST00000533628 UCSC:uc009zbz.3 ArrayExpress:E9PML2
Bgee:E9PML2 Uniprot:E9PML2
Length = 346
Score = 129 (50.5 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
+Q A+T+Y+VL ++ + +EL+P+T KHQLRVH + L PI+GD+KY W
Sbjct: 209 AQVAVTQYQVLSSTLSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWN 262
Query: 406 QMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCREL 449
++ + + G KL GL+ K +PL HLH R+L
Sbjct: 263 RLAPQKL--SVGTLKKL----GLEQSKARY---IPL-HLHARQL 296
Score = 86 (35.3 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 28/125 (22%), Positives = 58/125 (46%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXS--YDYNEGP-KLVHRLDR 257
L R + ++D ++V+NKP +P+ G V + + + P L HRLD+
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDK 154
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ K+ + LF +++ + K +YWA+ + P G+
Sbjct: 155 ETTGVMVLAWDKDMAHQVQELF----RTRQVVK-----------KYWAITVHVPMPSAGV 199
Query: 318 IHAPL 322
+ P+
Sbjct: 200 VDIPI 204
>UNIPROTKB|P0AA37 [details] [associations]
symbol:rluA species:83333 "Escherichia coli K-12"
[GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IMP] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA;IMP] [GO:0001522
"pseudouridine synthesis" evidence=IMP] [GO:0008033 "tRNA
processing" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000455
"enzyme-directed rRNA pseudouridine synthesis" evidence=IMP]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 HOGENOM:HOG000275919
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455
PIR:B64727 RefSeq:NP_414600.1 RefSeq:YP_488364.1 PDB:2I82
PDBsum:2I82 ProteinModelPortal:P0AA37 SMR:P0AA37 DIP:DIP-47988N
PRIDE:P0AA37 EnsemblBacteria:EBESCT00000004777
EnsemblBacteria:EBESCT00000017147 GeneID:12933046 GeneID:946262
KEGG:ecj:Y75_p0058 KEGG:eco:b0058 PATRIC:32115215 EchoBASE:EB2493
EcoGene:EG12609 KO:K06177 OMA:CQIVHRL ProtClustDB:PRK10158
BioCyc:EcoCyc:EG12609-MONOMER BioCyc:ECOL316407:JW0057-MONOMER
BioCyc:MetaCyc:EG12609-MONOMER EvolutionaryTrace:P0AA37
Genevestigator:P0AA37 Uniprot:P0AA37
Length = 219
Score = 119 (46.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 34/96 (35%), Positives = 49/96 (51%)
Query: 301 QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
++Y A V G P +G++ PL + D + Q E + A TEY V+
Sbjct: 94 KQYVARVWGHPSPAEGLVDLPL---ICDWPNRPK----QKVCYETGKPAQTEYEVVEYAA 146
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ + + L+P+T R HQLRVH ALG PI+GD Y
Sbjct: 147 DNTARVVLKPITGRSHQLRVHML-ALGHPILGDRFY 181
Score = 87 (35.7 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 29/106 (27%), Positives = 49/106 (46%)
Query: 189 GTLNPNADEIDYLRRLVKYRDSAILVLNKPPKV-PLKGHLPVHNSMDXXXXXXXSYDYNE 247
G N N + +L ++ Y+D I+V+NKP + + G L H DY +
Sbjct: 2 GMENYNPPQEPWL--VILYQDDHIMVVNKPSGLLSVPGRLEEHKD---SVMTRIQRDYPQ 56
Query: 248 GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKS-LSKAW 292
VHRLD +SG++++ TK + L F + K +++ W
Sbjct: 57 AES-VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVW 101
>UNIPROTKB|F1MN91 [details] [associations]
symbol:RPUSD3 "RNA pseudouridylate synthase
domain-containing protein 3" species:9913 "Bos taurus" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:DAAA02053757 IPI:IPI00693164 UniGene:Bt.53405 OMA:FSRTLQC
GeneTree:ENSGT00530000063800 Ensembl:ENSBTAT00000010478
Uniprot:F1MN91
Length = 344
Score = 162 (62.1 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 76/298 (25%), Positives = 132/298 (44%)
Query: 189 GTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEG 248
GT + + +D LR V R ++ LNKP +P+ G + S E
Sbjct: 61 GTFS-REELVDVLRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLLSVLPELSRSLGLGEQ 119
Query: 249 P-KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
++V +E+SGL+L+ ++ S L F+ +++ + Y A+
Sbjct: 120 EVQVVRASGKEASGLVLLSSCSQTASRLQKFFTHSRRARKPTAT-----------YCAVT 168
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG----LEASQEAMTEYRVLGPMINGC 363
G P +G I A L K+ DG ++ Q+ +E + ++ +RV+ +GC
Sbjct: 169 DGIPVTSEGKIQAAL-KLEHIDG-VNLVVPVQSPSRKDIMEGVKRTLSHFRVVATG-SGC 225
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLR 423
+ ++L+PLT QL+ H A L P++GD+ Y V Q + +E T KP +
Sbjct: 226 ALVQLQPLTVFPSQLQAHMALQL-CPVLGDHTYSARVGTVLGQRFLLPVEST--KPQRQV 282
Query: 424 RPDGLDVQ---KGSVLSKVPL-LHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSH 477
+ L + S +++PL LHLHC L P ++P P + +A +PS+
Sbjct: 283 LDEALLGRLCLTASQAARLPLHLHLHCLRL------P--GARPRDPPI-ELLAPLPSY 331
>UNIPROTKB|J9NWF9 [details] [associations]
symbol:RPUSD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 CTD:285367 OMA:FSRTLQC
GeneTree:ENSGT00530000063800 EMBL:AAEX03012078 RefSeq:XP_541778.3
Ensembl:ENSCAFT00000047015 GeneID:484663 KEGG:cfa:484663
Uniprot:J9NWF9
Length = 352
Score = 159 (61.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 70/262 (26%), Positives = 118/262 (45%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEGP-KLVHRLD 256
+D LR V + ++ LNKPP +P+ G S + +V
Sbjct: 77 VDALRAAVVDQKGPLVTLNKPPGLPVTGKPGELTLFSVLPELSQSLGLRDRELHVVQASG 136
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E+SGL+L+ ++ S L F +++ + YWA+ G P +G
Sbjct: 137 KETSGLVLLSSCPQTASHLQKFFIYSRRARRPTAT-----------YWAITDGIPATSEG 185
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEA----MTEYRVLGPMINGCSWIELRPLT 372
I A L K+ DG + +I ++ + QE ++ + V+ M +GC+ ++L+PLT
Sbjct: 186 NIQAAL-KLEHIDG-VDLVIPVKSPSRKDFQEGVKRTLSHFHVVA-MGSGCALVQLQPLT 242
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
QL+VH L P++GD+ Y V Q + E T KP + + PD +++
Sbjct: 243 VFPSQLQVHMVLQL-CPVLGDHTYSARVGTVLGQRFLLPAEST--KPQR-QVPDEALLRR 298
Query: 433 ----GSVLSKVPL-LHLHCREL 449
S +++PL LHLHC L
Sbjct: 299 LRLTPSQAAQLPLHLHLHCLHL 320
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 155 (59.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 39/95 (41%), Positives = 57/95 (60%)
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
Y A+VIG KEK+G++ ++KVL K E ++ N G + A+T++ V+ N
Sbjct: 171 YLAIVIGELKEKKGVVDCYINKVLF---KGEEVMQCNNIG--NGEHAITQFHVIKKFKN- 224
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
S IEL PLT RKHQ+R A ++G P++ D KYG
Sbjct: 225 TSLIELFPLTGRKHQIRSQMA-SIGHPVLNDGKYG 258
Score = 124 (48.7 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 44/172 (25%), Positives = 84/172 (48%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNP-NADEIDYLRRLVKYRDSAILV 214
+K + + G + L + ++ S R IPS + ++ ++++ L+ Y D +L
Sbjct: 45 VKASAAVLKGDSLTLSANFLQILSSPR--EIPSDSSKVVDSKFVEFIASLMLYEDENVLA 102
Query: 215 LNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
++KP P++ + S+D +Y ++VHRLD+ ++G+L+ +T ++
Sbjct: 103 ISKPFGFPVQSGYGITASIDNAMKSINP-EY----RVVHRLDKHTTGVLIFAKTLDAARE 157
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
L LFS+ KS Y A+VIG KEK+G++ ++KVL
Sbjct: 158 LWRLFSNRLVKKS---------------YLAIVIGELKEKKGVVDCYINKVL 194
>UNIPROTKB|Q2TBK7 [details] [associations]
symbol:RPUSD3 "RNA pseudouridylate synthase
domain-containing protein 3" species:9913 "Bos taurus" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:BC110000 IPI:IPI00693164
RefSeq:NP_001033650.1 UniGene:Bt.53405 ProteinModelPortal:Q2TBK7
PRIDE:Q2TBK7 GeneID:534606 KEGG:bta:534606 CTD:285367
HOGENOM:HOG000082513 HOVERGEN:HBG098171 InParanoid:Q2TBK7
OrthoDB:EOG4R23VC NextBio:20876465 Uniprot:Q2TBK7
Length = 344
Score = 156 (60.0 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 75/298 (25%), Positives = 131/298 (43%)
Query: 189 GTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEG 248
GT + + +D LR V ++ LNKP +P+ G + S E
Sbjct: 61 GTFS-REELVDVLRAAVVDSKGPLVTLNKPQGLPVTGKPGELTLLSVLPELSRSLGLGEQ 119
Query: 249 P-KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
++V +E+SGL+L+ ++ S L F+ +++ + Y A+
Sbjct: 120 EVQVVRASGKEASGLVLLSSCSQTASRLQKFFTHSRRARKPTAT-----------YCAVT 168
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG----LEASQEAMTEYRVLGPMINGC 363
G P +G I A L K+ DG ++ Q+ +E + ++ +RV+ +GC
Sbjct: 169 DGIPVTSEGKIQAAL-KLEHIDG-VNLVVPVQSPSRKDIMEGVKRTLSHFRVVATG-SGC 225
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLR 423
+ ++L+PLT QL+ H A L P++GD+ Y V Q + +E T KP +
Sbjct: 226 ALVQLQPLTVFPSQLQAHMALQL-CPVLGDHTYSARVGTVLGQRFLLPVEST--KPQRQV 282
Query: 424 RPDGLDVQ---KGSVLSKVPL-LHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSH 477
+ L + S +++PL LHLHC L P ++P P + +A +PS+
Sbjct: 283 LDEALLGRLCLTASQAARLPLHLHLHCLRL------P--GARPRDPPI-ELLAPLPSY 331
>TIGR_CMR|CPS_2290 [details] [associations]
symbol:CPS_2290 "ribosomal large subunit pseudouridine
synthase C" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF
RefSeq:YP_269010.1 ProteinModelPortal:Q482K7 SMR:Q482K7
STRING:Q482K7 GeneID:3520678 KEGG:cps:CPS_2290 PATRIC:21467679
BioCyc:CPSY167879:GI48-2355-MONOMER Uniprot:Q482K7
Length = 360
Score = 110 (43.8 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 34/95 (35%), Positives = 47/95 (49%)
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
Y ALV G K + L K L G ER+++ N + +E+ T +RVL G
Sbjct: 219 YHALVKGHWPTKLTRVTDALKKNDLKSG--ERVVVVDN---QLGKESETRFRVL-ERYRG 272
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ + P+T R HQ+RVHC + G I D KYG
Sbjct: 273 ATLVRAFPVTGRTHQIRVHC-QTSGHSIAMDAKYG 306
Score = 89 (36.4 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 29/109 (26%), Positives = 53/109 (48%)
Query: 178 RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXX 237
R+S+ D + +G L+ A+ L + + + D ++V+NKP + + G + S
Sbjct: 116 RVSEEKDAVSTG-LHIVAN----LEKQILFEDDRLIVINKPSGMAVHGGSGL--SFGLIE 168
Query: 238 XXXXSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSK 286
+LVHRLDR++SG L++ + + ++ L F D N K
Sbjct: 169 ALRALRPEARMLELVHRLDRDTSGCLMVAKKRSTLRHLHEQFRDKNVQK 217
>RGD|1304934 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain containing 1"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
RGD:1304934 GO:GO:0003723 EMBL:CH473948 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
CTD:113000 HOGENOM:HOG000047212 HOVERGEN:HBG096261 OMA:MMLHAHL
OrthoDB:EOG4RXZ10 EMBL:BC161966 IPI:IPI00369268
RefSeq:NP_001099244.1 UniGene:Rn.98412 STRING:B1WC14
Ensembl:ENSRNOT00000015206 GeneID:287148 KEGG:rno:287148
UCSC:RGD:1304934 NextBio:625615 Genevestigator:B1WC14
Uniprot:B1WC14
Length = 306
Score = 150 (57.9 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 52/153 (33%), Positives = 76/153 (49%)
Query: 248 GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
G + H+LD +SG L + K + F K + ++KA Y ALV
Sbjct: 59 GFRFCHQLDFSTSGALCVALNKAAAGSAYKCF----KERRVTKA-----------YLALV 103
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGP-MING--CS 364
G +E Q I+ + + + G+T + + G E + ++TE VL + +G S
Sbjct: 104 RGHVQESQVTINYAIGRNSTE-GRTHTMCIEGTHGCENPKPSLTELLVLEHGLYSGDPVS 162
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ L+PLT R HQLRVHC+ ALG PIVGD YG
Sbjct: 163 KVLLKPLTGRTHQLRVHCS-ALGHPIVGDLTYG 194
>UNIPROTKB|F1RG52 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GeneTree:ENSGT00510000048339 OMA:MMLHAHL
EMBL:FP016225 RefSeq:XP_003124746.1 UniGene:Ssc.2915
Ensembl:ENSSSCT00000008768 GeneID:100524553 KEGG:ssc:100524553
Uniprot:F1RG52
Length = 312
Score = 150 (57.9 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 62/201 (30%), Positives = 88/201 (43%)
Query: 205 VKYRDSAILVLNKPPKVPLKGH-----LPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRES 259
V YR LV+NK V + L + + D G + H+LD +
Sbjct: 11 VVYRSHDFLVVNKHWDVRIDSKAWRETLTLQKQLRHRFPELADPDTCYGFRFCHQLDFST 70
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG L + K + F D + ++KA Y ALV G +E + I
Sbjct: 71 SGALCVALNKAAAGSAYRCFKD----RRVTKA-----------YLALVRGHIQESRVTIS 115
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING---CSWIELRPLTCRKH 376
+ K + G+T + + G E + ++TE VL + G S + L+PLT R H
Sbjct: 116 YAIGKNSTE-GRTHTMCIEGTQGCENPKPSLTELVVLEHGLYGGDPVSKVLLQPLTGRTH 174
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVHC+ ALG PIVGD YG
Sbjct: 175 QLRVHCS-ALGHPIVGDLTYG 194
>MGI|MGI:1919186 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1919186
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00510000048339 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:AK049334 EMBL:BC018186 IPI:IPI00165813 RefSeq:NP_082285.1
UniGene:Mm.24603 ProteinModelPortal:Q8VCZ8 SMR:Q8VCZ8 STRING:Q8VCZ8
PhosphoSite:Q8VCZ8 PRIDE:Q8VCZ8 Ensembl:ENSMUST00000047273
GeneID:106707 KEGG:mmu:106707 UCSC:uc008bbl.1 InParanoid:Q8VCZ8
OMA:QESITHY NextBio:358344 Bgee:Q8VCZ8 CleanEx:MM_RPUSD1
Genevestigator:Q8VCZ8 Uniprot:Q8VCZ8
Length = 306
Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 51/153 (33%), Positives = 75/153 (49%)
Query: 248 GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
G + H+LD +SG L + K + F K + ++KA Y ALV
Sbjct: 59 GFRFCHQLDFSTSGALCVALNKAAAGSAYKCF----KERRVTKA-----------YLALV 103
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI---NGCS 364
G +E Q I+ + + + G+T + + G E + ++TE VL + + S
Sbjct: 104 RGHVQESQVTINYAIGRNSTE-GRTHTMCIEGTHGCENPKPSLTELLVLEHGLYAGDPVS 162
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ L+PLT R HQLRVHC+ ALG PIVGD YG
Sbjct: 163 KVLLKPLTGRTHQLRVHCS-ALGHPIVGDLTYG 194
>UNIPROTKB|Q17QT4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9913 "Bos taurus" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
EMBL:BC118196 IPI:IPI00690305 RefSeq:NP_001069342.1
UniGene:Bt.55430 STRING:Q17QT4 Ensembl:ENSBTAT00000000204
GeneID:525521 KEGG:bta:525521 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 InParanoid:Q17QT4 OMA:MMLHAHL OrthoDB:EOG4RXZ10
NextBio:20874185 Uniprot:Q17QT4
Length = 308
Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 61/201 (30%), Positives = 88/201 (43%)
Query: 205 VKYRDSAILVLNKPPKVPLKGH-----LPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRES 259
V YR LV+NK V + L + + D G + H+LD +
Sbjct: 11 VVYRSHDFLVVNKHWDVRIDSKAWRETLTLQKQLRHRFPELADPDTYYGFRFCHQLDFST 70
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG L + K + F D + ++KA Y ALV G +E + I
Sbjct: 71 SGALCVALNKAAAGSAYRCFKD----RRVTKA-----------YLALVRGHVQESRMTIS 115
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI---NGCSWIELRPLTCRKH 376
+ K + G+T + + G E + ++TE VL + + S + L+PLT R H
Sbjct: 116 YAIGKNSTE-GRTHTMCIEGTQGCENPKPSLTELVVLEHGLYAGDPVSKVLLQPLTGRTH 174
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVHC+ ALG PIVGD YG
Sbjct: 175 QLRVHCS-ALGHPIVGDLTYG 194
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 144 (55.7 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 47/145 (32%), Positives = 74/145 (51%)
Query: 301 QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
+ YW +V G K K+GII P+ + D +++ + N + A T Y+VL
Sbjct: 170 REYWTIVHGYLKNKEGIIDLPIGRHPRD---RQKMAVVSNG-----KTAQTVYKVLEEFN 221
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG-----WFVHRRWKQMPRVD-IEP 414
G + I+ + LT R HQ+RVH + LG P++GD KYG + V R+ ++ I P
Sbjct: 222 KGFTLIQAKLLTGRTHQIRVHFSY-LGHPVLGDPKYGHQNNPFGVKRQMLHAIKLSFIHP 280
Query: 415 TSGKPYKLRRPDGLDVQKGSVLSKV 439
SG+ + P D Q+ VL+K+
Sbjct: 281 RSGELLEFTAPLPEDFQR--VLAKL 303
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 143 (55.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 55/197 (27%), Positives = 93/197 (47%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHL-PVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESS 260
V Y D ++V++KP V P+K H P + + EG ++RLDR +S
Sbjct: 79 VLYEDDYLIVIDKPAGVLAHPVKNHFAPSMQELTLSYYRDKGRIF-EGFYPIYRLDRNTS 137
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G +L+ + SL+ + ++ + + ++K Y AL+ G +K GII+
Sbjct: 138 GPMLIAK----FSLIAEMLNNSLRKRQINKI-----------YLALIEGPLADKSGIINL 182
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LL+ +R ++ Q A T+Y+ + + +++ LT R HQ+R
Sbjct: 183 PLG--LLEGSIIKRAVVP------GGQPACTKYQTVKAFPTH-TLLKVELLTGRTHQIRA 233
Query: 381 HCAEALGTPIVGDYKYG 397
H A A+G P+ GD YG
Sbjct: 234 HFA-AIGHPLAGDDLYG 249
>UNIPROTKB|Q4KFS5 [details] [associations]
symbol:rluC "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0006364 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF RefSeq:YP_258908.1
ProteinModelPortal:Q4KFS5 SMR:Q4KFS5 STRING:Q4KFS5 GeneID:3477558
KEGG:pfl:PFL_1788 PATRIC:19872807 ProtClustDB:CLSK867667
BioCyc:PFLU220664:GIX8-1796-MONOMER Uniprot:Q4KFS5
Length = 318
Score = 127 (49.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 40/118 (33%), Positives = 61/118 (51%)
Query: 282 VNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQ 339
+ K +S+ + + A + + +RY ALV G + APL K L G ER++
Sbjct: 155 IAKKRSMLRHLHAALRGDGVDKRYMALVRGHWATAVKQVRAPLLKSNLRSG--ERMVEVN 212
Query: 340 NSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
G +EA+T ++VL + + +E +P+T R HQ+RVH A G I GD KYG
Sbjct: 213 EEG----KEALTVFKVLRRFGDFATMVEAKPVTGRTHQIRVHTLHA-GHCIAGDSKYG 265
Score = 58 (25.5 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +V+ R+ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDVV----RV-PPV-----RVPERDEPVPLAQ-----GLLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG 225
L + + D A++V+NKP + + G
Sbjct: 93 LEASIVFEDKALIVINKPAGIAVHG 117
Score = 43 (20.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 153 IRKIKTNEVMEPGARIFL--PVSM-VEGRISKRYDTIPS-GTLNPNADEIDYLRRLVKYR 208
+++++ + V E A I + P + V G + I + L P+A E++ + RL +
Sbjct: 90 LQRLEASIVFEDKALIVINKPAGIAVHGGSGLNFGVIEAFRQLRPDAKELELVHRLDRDT 149
Query: 209 DSAILVLNK 217
+++ K
Sbjct: 150 SGLLMIAKK 158
>UNIPROTKB|Q6P087 [details] [associations]
symbol:RPUSD3 "RNA pseudouridylate synthase
domain-containing protein 3" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC018809 eggNOG:COG0564
CTD:285367 HOGENOM:HOG000082513 HOVERGEN:HBG098171
OrthoDB:EOG4R23VC EMBL:BC032135 EMBL:BC062362 EMBL:BC065741
EMBL:AK092026 IPI:IPI00796048 IPI:IPI00916988 IPI:IPI01011982
RefSeq:NP_001136019.1 RefSeq:NP_775930.2 UniGene:Hs.33719
ProteinModelPortal:Q6P087 PhosphoSite:Q6P087 DMDM:294862493
PRIDE:Q6P087 DNASU:285367 Ensembl:ENST00000383820
Ensembl:ENST00000433535 GeneID:285367 KEGG:hsa:285367
UCSC:uc011atk.2 UCSC:uc011atl.2 GeneCards:GC03M009879
HGNC:HGNC:28437 HPA:HPA037552 neXtProt:NX_Q6P087
PharmGKB:PA134924883 InParanoid:Q6P087 OMA:FSRTLQC
GenomeRNAi:285367 NextBio:95474 ArrayExpress:Q6P087 Bgee:Q6P087
CleanEx:HS_RPUSD3 Genevestigator:Q6P087 Uniprot:Q6P087
Length = 351
Score = 142 (55.0 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 67/262 (25%), Positives = 114/262 (43%)
Query: 192 NPNADE-IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEGP- 249
N + +E +D LR V R ++ LNKP +P+ G S E
Sbjct: 69 NLSREELVDALRAAVVDRKGPLVTLNKPQGLPVTGKPGELTLFSVLPELSQSLGLREQEL 128
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
++V +ESSGL+L+ ++ S L F+ +++ + Y A+ G
Sbjct: 129 QVVRASGKESSGLVLLSSCPQTASRLQKYFTHARRAQRPTAT-----------YCAVTDG 177
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG--LEASQEAMTEYRVLGPMINGCSWIE 367
P +G I A L +D + A + LE ++ ++ +RV+ +GC+ ++
Sbjct: 178 IPAASEGKIQAALKLEHIDGVNLTVPVKAPSRKDILEGVKKTLSHFRVVATG-SGCALVQ 236
Query: 368 LRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDG 427
L+PLT QL+VH L P++GD+ Y V Q R + + KP + +
Sbjct: 237 LQPLTVFSSQLQVHMVLQL-CPVLGDHMYSARVGTVLGQ--RFLLPAENNKPQRQVLDEA 293
Query: 428 LDVQ---KGSVLSKVPL-LHLH 445
L + S +++PL LHLH
Sbjct: 294 LLRRLHLTPSQAAQLPLHLHLH 315
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 44/124 (35%), Positives = 58/124 (46%)
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
YWALV G P + AP++KV G T R +A + A+TE+RV+ NG
Sbjct: 166 YWALVAGMPLADSWQVDAPVAKV----G-TSRYGVAP-----VGKAALTEFRVVARG-NG 214
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR-VDIEPTSGKPYK 421
+ +E RP T R HQ+RVH A G I+GD YG R R + G+P
Sbjct: 215 ATLVEARPRTGRTHQIRVHLAHG-GLSIIGDTTYGGIAAPRMMLHCRTMTFRAEDGRPVS 273
Query: 422 LRRP 425
P
Sbjct: 274 ATAP 277
>UNIPROTKB|Q9KN61 [details] [associations]
symbol:VC_A0104 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 49/143 (34%), Positives = 68/143 (47%)
Query: 258 ESSGLLLMGRTKESVS-LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
++ G+ + R S S LL + + +K L K + A+ +RY AL+ G E QG
Sbjct: 58 QAEGVFALHRLDMSTSGLLVFALTR-RANKQLQKQF--ISRAVQKRYVALIEGKLSETQG 114
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I PL L DD +++ Q + A+T + + N + L P T R H
Sbjct: 115 EIQLPLCGDL-DDRPRQKVCWQQG------KPALTHWETVQVEQNRTR-VYLYPHTGRTH 166
Query: 377 QLRVHCAEALG--TPIVGDYKYG 397
QLRVHCA LG PIVGD YG
Sbjct: 167 QLRVHCAHHLGLNAPIVGDDLYG 189
Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
Identities = 41/135 (30%), Positives = 63/135 (46%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ + EG +HRLD +SGLL+
Sbjct: 20 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 77
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 78 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 122
Query: 325 VLLDDGKTERIILAQ 339
L DD +++ Q
Sbjct: 123 DL-DDRPRQKVCWQQ 136
>TIGR_CMR|VC_A0104 [details] [associations]
symbol:VC_A0104 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 49/143 (34%), Positives = 68/143 (47%)
Query: 258 ESSGLLLMGRTKESVS-LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
++ G+ + R S S LL + + +K L K + A+ +RY AL+ G E QG
Sbjct: 58 QAEGVFALHRLDMSTSGLLVFALTR-RANKQLQKQF--ISRAVQKRYVALIEGKLSETQG 114
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I PL L DD +++ Q + A+T + + N + L P T R H
Sbjct: 115 EIQLPLCGDL-DDRPRQKVCWQQG------KPALTHWETVQVEQNRTR-VYLYPHTGRTH 166
Query: 377 QLRVHCAEALG--TPIVGDYKYG 397
QLRVHCA LG PIVGD YG
Sbjct: 167 QLRVHCAHHLGLNAPIVGDDLYG 189
Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
Identities = 41/135 (30%), Positives = 63/135 (46%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ + EG +HRLD +SGLL+
Sbjct: 20 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 77
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 78 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 122
Query: 325 VLLDDGKTERIILAQ 339
L DD +++ Q
Sbjct: 123 DL-DDRPRQKVCWQQ 136
>TIGR_CMR|CPS_3649 [details] [associations]
symbol:CPS_3649 "tRNA pseudouridine synthase C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 HOGENOM:HOG000275920
KO:K06175 RefSeq:YP_270317.1 ProteinModelPortal:Q47Y03
STRING:Q47Y03 GeneID:3523321 KEGG:cps:CPS_3649 PATRIC:21470223
OMA:EIANAVC BioCyc:CPSY167879:GI48-3671-MONOMER Uniprot:Q47Y03
Length = 304
Score = 111 (44.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 39/105 (37%), Positives = 53/105 (50%)
Query: 298 AMYQRYWALVIGSPKEKQGIIHAPLSKVL--LDDGKTERIILAQN--SGLEASQEAMTEY 353
AM + Y+AL G +I PL + L L D R AQ+ S + Q+A
Sbjct: 145 AMVKTYYALARGHLAVPVDLIDHPLKEKLDKLGDKNVSRDKPAQSAQSYYQVKQQASLPI 204
Query: 354 RVLGPMIN-GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+V G + S IE+RP+T R+HQ+R H A L PI+GD YG
Sbjct: 205 KV-GKFDSVRYSLIEVRPITGRRHQIRRHLAH-LRHPILGDINYG 247
Score = 70 (29.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 252 VHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKS 285
VHRLDR +SG+LL TK+ + L+ F+ NKS
Sbjct: 69 VHRLDRPTSGVLLFALTKDVATKLSEAFA--NKS 100
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 41/143 (28%), Positives = 73/143 (51%)
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R+ + ++ R + S + L + S+ + + + + ++Y AL G PK G
Sbjct: 129 RDGESMKIVHRLDKDTSGILMLARNARISRLIMHEFKN--RRVEKKYLALTQGIPKNDIG 186
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I+ + K + ++ + +S L QEA+T + VL + G +EL+P+T RKH
Sbjct: 187 QINHSIIK----NKRSLSLDKVNDSYL---QEAVTSFSVLKKLPYGIGLLELKPITGRKH 239
Query: 377 QLRVHCAEALGTPIVGDYKYGWF 399
Q+R+H + +G I+GD KYG F
Sbjct: 240 QIRIHLSH-IGCSIIGDKKYGKF 261
>UNIPROTKB|Q9KP71 [details] [associations]
symbol:rluA "Ribosomal large subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 99 (39.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
Y+A V G ++ +G ++ PL D + Q E ++++T Y+V+
Sbjct: 96 YYARVWGVMEQNEGEVNLPLC---CDWPNRPK----QKVCFEEGRDSLTRYQVV-KREEK 147
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ + L P+T R HQLRVH ++LG PIVGD Y
Sbjct: 148 TTVVRLIPITGRSHQLRVHM-QSLGHPIVGDDLY 180
Score = 79 (32.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 25/71 (35%), Positives = 32/71 (45%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESSGLLL 264
V Y D I+ NKP + PV + D DY K+VHRLD +SGL+L
Sbjct: 16 VIYEDEHIIAANKPSGLLSVPGRPVEH-YDSMWARLV--DYCPDVKVVHRLDMSTSGLIL 72
Query: 265 MGRTKESVSLL 275
+ K S L
Sbjct: 73 FAKGKHMESAL 83
>TIGR_CMR|VC_2505 [details] [associations]
symbol:VC_2505 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 99 (39.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 31/94 (32%), Positives = 49/94 (52%)
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
Y+A V G ++ +G ++ PL D + Q E ++++T Y+V+
Sbjct: 96 YYARVWGVMEQNEGEVNLPLC---CDWPNRPK----QKVCFEEGRDSLTRYQVV-KREEK 147
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ + L P+T R HQLRVH ++LG PIVGD Y
Sbjct: 148 TTVVRLIPITGRSHQLRVHM-QSLGHPIVGDDLY 180
Score = 79 (32.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 25/71 (35%), Positives = 32/71 (45%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESSGLLL 264
V Y D I+ NKP + PV + D DY K+VHRLD +SGL+L
Sbjct: 16 VIYEDEHIIAANKPSGLLSVPGRPVEH-YDSMWARLV--DYCPDVKVVHRLDMSTSGLIL 72
Query: 265 MGRTKESVSLL 275
+ K S L
Sbjct: 73 FAKGKHMESAL 83
>ZFIN|ZDB-GENE-060929-444 [details] [associations]
symbol:rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-060929-444 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 CTD:113000 HOGENOM:HOG000047212
HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10 EMBL:BC124362 IPI:IPI00800847
RefSeq:NP_001070221.1 UniGene:Dr.5843 ProteinModelPortal:Q08C69
STRING:Q08C69 GeneID:767786 KEGG:dre:767786 InParanoid:Q08C69
NextBio:20918166 ArrayExpress:Q08C69 Uniprot:Q08C69
Length = 293
Score = 137 (53.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 50/152 (32%), Positives = 71/152 (46%)
Query: 248 GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
G + H+LD +SG L + K + F D + ++KA Y ALV
Sbjct: 59 GFRFCHQLDFSTSGALCVALNKAAAGQAYRCFKD----RRVTKA-----------YLALV 103
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG-PMING--CS 364
G+ E+ + + K + GKT + G E + TE VL +G +
Sbjct: 104 RGTVTEENLSLDFAIGKNTTE-GKTHMMCTEGTEGCENPKPCQTEVTVLEYGTYDGDQVT 162
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ L+PLT R HQLRVHC+ A+G PIVGDY Y
Sbjct: 163 KVLLQPLTGRTHQLRVHCS-AIGHPIVGDYTY 193
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 98 (39.6 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 344 EASQEAMTEYRVLG--PMIN--GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
E ++++T YRVL I+ + +EL P+T R HQLRVH ALG PI+GD Y
Sbjct: 133 ENGKKSLTHYRVLSHNDSIDEQANTLLELTPITGRSHQLRVHML-ALGHPILGDRLY 188
Score = 78 (32.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 25/88 (28%), Positives = 39/88 (44%)
Query: 207 YRDSAILVLNKPPKV-PLKGHLPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESSGLLLM 265
Y+D I+VLNK + + G LP H +VHRLD +SG+++M
Sbjct: 21 YQDDDIVVLNKASGILSVPGRLPEHQDCLQNRVQRVL----PTATIVHRLDMATSGIMIM 76
Query: 266 GRTKESVSLLTWLFSDVNKSKS-LSKAW 292
K + ++ F KS L++ W
Sbjct: 77 ALNKPAHVAISRQFEQRKTQKSYLARVW 104
>UNIPROTKB|F1SQE3 [details] [associations]
symbol:RPUSD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 CTD:285367 OMA:FSRTLQC GeneTree:ENSGT00530000063800
EMBL:CU633418 RefSeq:XP_001928432.1 UniGene:Ssc.25214
Ensembl:ENSSSCT00000012645 GeneID:100153857 KEGG:ssc:100153857
Uniprot:F1SQE3
Length = 352
Score = 138 (53.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 72/294 (24%), Positives = 127/294 (43%)
Query: 192 NPNADE-IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEGP- 249
N + +E +D LR V + ++ LNKP +P+ G + E
Sbjct: 70 NLSREELVDVLREAVVDQKGPLVTLNKPQGLPVTGKPGELTLVSVLPELSQCLGLGEREL 129
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
++V +E+SGL+L+ ++ S L F+ +++ + Y A+ G
Sbjct: 130 QVVRASGKETSGLVLLSSCPQTASRLQKFFTHSQRARKPTAT-----------YCAVTDG 178
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG---LEASQEAMTEYRVLGPMINGCSWI 366
P +G I A L K+ DG + + + S L+ + ++ +RVL +GC+ +
Sbjct: 179 IPAASEGKIQAAL-KMEHTDGASLVVPVKSPSRKDFLKGVKWTLSHFRVLASG-SGCALV 236
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPD 426
+L+PLT QL+VH L P++GD+KY V Q + E T KP + +
Sbjct: 237 QLQPLTAFPSQLQVHMVLQL-CPVLGDHKYSACVGTVLGQRFLLPAENT--KPQRQVLDE 293
Query: 427 GLDVQ---KGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSH 477
L + + +++PL H+H L P D P + +A +PS+
Sbjct: 294 ALLSRLHLTPAQAAQLPL-HIHLHRLHLPGTRPR-----DAP--IELLAPLPSY 339
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 46/129 (35%), Positives = 66/129 (51%)
Query: 269 KESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLD 328
K++ +L SD +SLS+ ++D + + Y ALV GSP+E +G I + + D
Sbjct: 143 KDTSGVLVVAKSD-RAHESLSRQFHD--HTVKRVYLALVYGSPREDKGRIEGAIGRHPTD 199
Query: 329 DGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGT 388
K A G + A+T +RV G + + LR T R HQ+RVH AEA G
Sbjct: 200 RKKMSG---AARHG----KHAVTHWRVAA-RFTGVTLLRLRLETGRTHQIRVHMAEA-GF 250
Query: 389 PIVGDYKYG 397
P+VGD YG
Sbjct: 251 PLVGDEVYG 259
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 95 (38.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 30/100 (30%), Positives = 47/100 (47%)
Query: 181 KRYDTIPSGTLNPNADEIDYLRRLVK----YRDSAILVLNKPPKVPLKGHLPVHNSMDXX 236
+ D I S + D L RLV Y+D I+ +NKP V ++G V S+
Sbjct: 50 RNVDKIASRSKEAKEVHDDALLRLVSDNIIYKDENIIAINKPAGVNVQGGTKVSISLSDL 109
Query: 237 XXXXXSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLT 276
E +VHRLDR++SG+L++ R + +L+
Sbjct: 110 LNKIIP---GEQLHIVHRLDRDTSGVLIIARGQSIARILS 146
Score = 84 (34.6 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 347 QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+EA T + VL + L P+T RKHQLR+H ++ PI+GD KY
Sbjct: 192 KEAKTVFSVLQSSKRHAVML-LSPVTGRKHQLRIHLSQFC-CPIIGDTKY 239
>UNIPROTKB|P0AA41 [details] [associations]
symbol:truC species:83333 "Escherichia coli K-12"
[GO:0006399 "tRNA metabolic process" evidence=IMP] [GO:0009451 "RNA
modification" evidence=IMP] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IMP] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA;IMP] [GO:0008033 "tRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U29581
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
eggNOG:COG0564 PIR:C65061 RefSeq:NP_417271.1 RefSeq:YP_490999.1
ProteinModelPortal:P0AA41 SMR:P0AA41
EnsemblBacteria:EBESCT00000002568 EnsemblBacteria:EBESCT00000016436
GeneID:12933253 GeneID:947242 KEGG:ecj:Y75_p2728 KEGG:eco:b2791
PATRIC:32120998 EchoBASE:EB2963 EcoGene:EG13171
HOGENOM:HOG000275920 KO:K06175 OMA:FHPIMGD ProtClustDB:PRK11112
BioCyc:EcoCyc:G7449-MONOMER BioCyc:ECOL316407:JW2762-MONOMER
BioCyc:MetaCyc:G7449-MONOMER Genevestigator:P0AA41 Uniprot:P0AA41
Length = 260
Score = 132 (51.5 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 65/208 (31%), Positives = 93/208 (44%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNS-MDXXXXXXXSYDYNE--GPKL--VHRLDRES 259
+ Y+D ++ +NKP G L VH S +D + G + HRLDR +
Sbjct: 4 ILYQDEWLVAVNKP-----SGWL-VHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPT 57
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG+LLMG + E+ LL F + +RY A+V G E + ++
Sbjct: 58 SGVLLMGLSSEAGRLLAQQFEQ---------------HQIQKRYHAIVRGWLME-EAVLD 101
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG----PMING------CSWIELR 369
PL + L D ++ ++ G Q A+T YR L P+ G +EL
Sbjct: 102 YPLVEEL--DKIADKFA-REDKG---PQPAVTHYRGLATVEMPVATGRYPTTRYGLVELE 155
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P T RKHQLR H A L PI+GD K+G
Sbjct: 156 PKTGRKHQLRRHLAH-LRHPIIGDSKHG 182
>UNIPROTKB|E2R7K0 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
CTD:113000 OMA:MMLHAHL EMBL:AAEX03004670 RefSeq:XP_547206.2
ProteinModelPortal:E2R7K0 Ensembl:ENSCAFT00000031177 GeneID:490085
KEGG:cfa:490085 NextBio:20863184 Uniprot:E2R7K0
Length = 302
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 47/153 (30%), Positives = 73/153 (47%)
Query: 248 GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
G + H+LD +SG L + K + F K + ++KA Y ALV
Sbjct: 59 GFRFCHQLDFSTSGALCVALNKAAAGSAYKCF----KERRVTKA-----------YLALV 103
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI---NGCS 364
G +E + I+ + + + G+ + + G E + ++TE VL + + S
Sbjct: 104 RGHVQESRMTINYAIGRNSTE-GRAHTMCIEGTEGCENPKPSLTELVVLEHGLYAGDPVS 162
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ L+PLT R HQLRVHC+ AL P+VGD YG
Sbjct: 163 KVLLQPLTGRTHQLRVHCS-ALSHPVVGDLTYG 194
>CGD|CAL0002400 [details] [associations]
symbol:orf19.3177 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002125 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR016193 InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 CGD:CAL0002400
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0016787
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 eggNOG:COG0117 KO:K14655
RefSeq:XP_714595.1 RefSeq:XP_714726.1 ProteinModelPortal:Q59YK3
STRING:Q59YK3 GeneID:3643617 GeneID:3643740 KEGG:cal:CaO19.10687
KEGG:cal:CaO19.3177 Uniprot:Q59YK3
Length = 589
Score = 99 (39.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 321 PLSKVLLDDG-KTERIILAQNS-GLEASQEAMTEY-RVLGPMINGCSWIELRPLTCRKHQ 377
PL ++++D T+ L N +E +EA TE+ RV I S ++ PLT R HQ
Sbjct: 262 PLDRIIVDKPLSTKSPKLTLNVVDMENGKEAKTEFQRVSYDPITNTSVVKCHPLTGRTHQ 321
Query: 378 LRVHCAEALGTPIVGDYKY 396
+RVH + LG PI D Y
Sbjct: 322 IRVHL-QFLGYPIANDPIY 339
Score = 82 (33.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYNEGPKLVH---RLDRESSG 261
+ + D +LV++KP G +PVH + +E K+VH RLDR +SG
Sbjct: 173 IVFEDDDLLVIDKP------GGIPVHPTGRYRYNTVTKIFEHEKGKIVHPCNRLDRLTSG 226
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSK 286
L+ +G++ + + + D N +K
Sbjct: 227 LMFLGKSSKGANNMMSQIRDRNVTK 251
>UNIPROTKB|Q9UJJ7 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:CH471112 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AL031033 EMBL:AE006465 HSSP:P0AA39 eggNOG:COG0564 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:BC011783 IPI:IPI00016510 RefSeq:NP_478072.1 UniGene:Hs.101742
ProteinModelPortal:Q9UJJ7 SMR:Q9UJJ7 IntAct:Q9UJJ7 STRING:Q9UJJ7
PhosphoSite:Q9UJJ7 DMDM:74753357 PRIDE:Q9UJJ7 DNASU:113000
Ensembl:ENST00000007264 Ensembl:ENST00000561734 GeneID:113000
KEGG:hsa:113000 UCSC:uc002cka.3 GeneCards:GC16M000834
HGNC:HGNC:14173 HPA:HPA041144 HPA:HPA041938 neXtProt:NX_Q9UJJ7
PharmGKB:PA25556 InParanoid:Q9UJJ7 OMA:VSGREDR PhylomeDB:Q9UJJ7
GenomeRNAi:113000 NextBio:78731 Bgee:Q9UJJ7 CleanEx:HS_RPUSD1
Genevestigator:Q9UJJ7 Uniprot:Q9UJJ7
Length = 312
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 55/201 (27%), Positives = 88/201 (43%)
Query: 205 VKYRDSAILVLNKPPKVPLKGH-----LPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRES 259
+ YR LV+NK V + L + + D G + H+LD +
Sbjct: 11 IVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGFRFCHQLDFST 70
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG L + K + F K + ++KA Y AL+ G +E + I
Sbjct: 71 SGALCVALNKAAAGSAYRCF----KERRVTKA-----------YLALLRGHIQESRVTIS 115
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI---NGCSWIELRPLTCRKH 376
+ + + G+ + + + G E + ++T+ VL + + S + L+PLT R H
Sbjct: 116 HAIGRNSTE-GRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTH 174
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVHC+ ALG P+VGD YG
Sbjct: 175 QLRVHCS-ALGHPVVGDLTYG 194
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 43/135 (31%), Positives = 67/135 (49%)
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
Y LV G +G I APL + D ++I + N + A T Y+VL I G
Sbjct: 168 YLTLVQGELHPAEGFIEAPLGR---DPQNRQKIAVVSNG-----RPARTGYKVLR-YIQG 218
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG----WFVHRRWKQMPRVDIE-PTSG 417
S +E++ T R HQ+RVH A A+G P+ GD YG W + R++ R+ P++G
Sbjct: 219 YSLLEVKLETGRTHQIRVHFA-AIGHPVAGDAVYGQKETW-LKRQFLHAHRLSFSLPSNG 276
Query: 418 KPYKLRRPDGLDVQK 432
+ + P D+++
Sbjct: 277 QNVEFSSPLPPDLEE 291
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 38/124 (30%), Positives = 65/124 (52%)
Query: 207 YRDSAILVLNKPPKV---PLKGHLPVHNSMDXXXXXXXSY-DYNEG--PKLVHRLDRESS 260
++D +L++NKPP + P GH P H ++ D+++ P +VHRLD+++S
Sbjct: 82 FQDKDLLLINKPPGLTVHPAPGH-PDHTLINGVLALEPEMEDFDDPLRPGIVHRLDKDTS 140
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL+ + +E+++ L+ F K +++ K Y Y LV G +G I A
Sbjct: 141 GLLLVAKNREALANLSAQF----KERTVRK---------Y--YLTLVQGELHPAEGFIEA 185
Query: 321 PLSK 324
PL +
Sbjct: 186 PLGR 189
>MGI|MGI:2141440 [details] [associations]
symbol:Rpusd3 "RNA pseudouridylate synthase domain
containing 3" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:2141440
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 CTD:285367 HOGENOM:HOG000082513 HOVERGEN:HBG098171
OrthoDB:EOG4R23VC OMA:FSRTLQC EMBL:AK076749 EMBL:AK133871
EMBL:BC038081 EMBL:BC116825 EMBL:BC116827 IPI:IPI00229799
IPI:IPI00459320 RefSeq:NP_001028376.1 UniGene:Mm.31204
ProteinModelPortal:Q14AI6 SMR:Q14AI6 PhosphoSite:Q14AI6
PRIDE:Q14AI6 Ensembl:ENSMUST00000113092 Ensembl:ENSMUST00000129047
GeneID:101122 KEGG:mmu:101122 UCSC:uc009dfy.2 UCSC:uc009dga.1
GeneTree:ENSGT00530000063800 InParanoid:Q14AI6 NextBio:354774
Bgee:Q14AI6 CleanEx:MM_RPUSD3 Genevestigator:Q14AI6 Uniprot:Q14AI6
Length = 344
Score = 128 (50.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 72/297 (24%), Positives = 132/297 (44%)
Query: 190 TLNPNADEIDY-LRRLVKYRDSAILVLNKPPKVPLKGH---LPVHNSMDXXXXXXXSYDY 245
T N +E+ + LR V + ++ LNKP +P+ G L + + + ++
Sbjct: 60 TENLGLEELAHVLRAAVVDQKGPLVTLNKPQGLPVTGRPGELTLLSVLPQLSQAL-GLEH 118
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
E ++V +E+SGL+L+ ++ S L F +++ + Y A
Sbjct: 119 QE-LQVVRAPGKEASGLVLLSSCPQTASRLQKFFIHSRRAQRPTAT-----------YCA 166
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG--LEASQEAMTEYRVLGPMINGC 363
+ G P+ +G + PL ++D +++ + E + ++ + V+ GC
Sbjct: 167 VTDGIPEPSEGTVCMPLKMEQMNDVDLAVPVMSPSRKDIQEGVKRTLSRFHVMATG-RGC 225
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLR 423
+ ++L+PLT +QL+VH A L PI+GD+ Y V Q E T KP +
Sbjct: 226 ALVQLQPLTVFPNQLQVHMALQL-CPILGDHTYAARVGTVLGQRFLWPAETT--KPQRQV 282
Query: 424 RPDGL--DVQKG-SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSH 477
+ L ++ S ++++PL HLH L L P S+ D P L +A +P +
Sbjct: 283 LDEALLRHLRLSPSQVAQMPL-HLHLHRL----LLPGTGSR-DPPSEL--LAPLPPY 331
>TIGR_CMR|NSE_0146 [details] [associations]
symbol:NSE_0146 "ribosomal large subunit pseudouridine
synthases, RluA family" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_506045.1
ProteinModelPortal:Q2GEQ1 STRING:Q2GEQ1 GeneID:3931949
KEGG:nse:NSE_0146 PATRIC:22680393 OMA:GVIRREY
ProtClustDB:CLSK2527656 BioCyc:NSEN222891:GHFU-181-MONOMER
Uniprot:Q2GEQ1
Length = 330
Score = 100 (40.3 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 32/103 (31%), Positives = 55/103 (53%)
Query: 297 EAMYQR-YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRV 355
E + +R Y ALV P G I P+ + G+ ++++ + SG + A+T Y V
Sbjct: 163 EGVIRREYLALVHSVPASLSGEIKKPIKR-----GQ-RKMMIGRCSG----KPALTYYGV 212
Query: 356 LGPMING-CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ ++ CS + R + R HQ+R+H +++G P+VGD YG
Sbjct: 213 IARTVDRKCSLVHCRLGSGRTHQIRLHM-KSIGCPVVGDKLYG 254
Score = 68 (29.0 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLP--VHNSMDXX--XXXXXSYDYNEGPKLVHRLDR 257
V+Y D +LV+ KP + P G+ + N ++ S D + P +VHRLD+
Sbjct: 81 VRYEDDCLLVIYKPAGLVVHPGIGNREQTLVNILEHHYPTEKLSSLDSSR-PGIVHRLDK 139
Query: 258 ESSGLLLMGRT 268
+++G L++ +T
Sbjct: 140 DTAGFLIVAKT 150
>FB|FBgn0032256 [details] [associations]
symbol:RluA-2 "RluA-2" species:7227 "Drosophila melanogaster"
[GO:0043723 "2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone
5'-phosphate deaminase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 SMART:SM00363 EMBL:AE014134
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
OrthoDB:EOG473N6H EMBL:AY058686 RefSeq:NP_609411.1 UniGene:Dm.4124
SMR:Q9VKU8 IntAct:Q9VKU8 MINT:MINT-935784 STRING:Q9VKU8
EnsemblMetazoa:FBtr0080032 GeneID:34440 KEGG:dme:Dmel_CG6187
UCSC:CG6187-RA CTD:34440 FlyBase:FBgn0032256 InParanoid:Q9VKU8
GenomeRNAi:34440 NextBio:788509 Uniprot:Q9VKU8
Length = 547
Score = 101 (40.6 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYN-EGPKLVHRLDRESSGLL 263
+ Y D I+V+NKP +P+ H P + ++N + + +HRLDR +SGLL
Sbjct: 218 IVYMDKDIVVVNKPASIPV--H-PCGRYRHNTVVFILAKEHNLKNLRTIHRLDRLTSGLL 274
Query: 264 LMGRTKE 270
L GRT E
Sbjct: 275 LFGRTAE 281
Score = 72 (30.4 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 347 QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
++ T ++ +G + S + +PLT R HQ+RVH + LG PI D Y
Sbjct: 335 KDCKTTFKRIGE-VGSDSIVLCKPLTGRMHQIRVHL-QFLGYPISNDPLY 382
>UNIPROTKB|Q9KTL4 [details] [associations]
symbol:truC "tRNA pseudouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 61/211 (28%), Positives = 96/211 (45%)
Query: 205 VKYRDSAILVLNKPPKVPL-KGHLPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESSGLL 263
+ Y+D ++ +NKP + + + L H + + P +HRLDR +SG+L
Sbjct: 4 IVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFP--LHRLDRPTSGVL 61
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
+ + + S + +F++ K+ Y A+V G +E ++ PL
Sbjct: 62 VFALSSQIASEVMPMFANHEMEKT---------------YHAIVRGWIEEAN-VLDYPLK 105
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG----PMING-------CSWIELRPLT 372
+ L D ++ Q+ EA Q A+T YR L P+ G C +E++P T
Sbjct: 106 EEL--DKIADKFA-KQDK--EA-QSAVTAYRPLAKVELPIATGKFATTRYCL-MEMQPKT 158
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 403
RKHQLR H A L PIVGD +G VH R
Sbjct: 159 GRKHQLRRHMAH-LRHPIVGDTTHGDGVHNR 188
>TIGR_CMR|VC_0888 [details] [associations]
symbol:VC_0888 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 61/211 (28%), Positives = 96/211 (45%)
Query: 205 VKYRDSAILVLNKPPKVPL-KGHLPVHNSMDXXXXXXXSYDYNEGPKLVHRLDRESSGLL 263
+ Y+D ++ +NKP + + + L H + + P +HRLDR +SG+L
Sbjct: 4 IVYQDEYLVAVNKPAGMLVHRSWLDKHETEFVMQTLRDQIGQHVFP--LHRLDRPTSGVL 61
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
+ + + S + +F++ K+ Y A+V G +E ++ PL
Sbjct: 62 VFALSSQIASEVMPMFANHEMEKT---------------YHAIVRGWIEEAN-VLDYPLK 105
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG----PMING-------CSWIELRPLT 372
+ L D ++ Q+ EA Q A+T YR L P+ G C +E++P T
Sbjct: 106 EEL--DKIADKFA-KQDK--EA-QSAVTAYRPLAKVELPIATGKFATTRYCL-MEMQPKT 158
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 403
RKHQLR H A L PIVGD +G VH R
Sbjct: 159 GRKHQLRRHMAH-LRHPIVGDTTHGDGVHNR 188
>UNIPROTKB|E1C0L7 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
OMA:MMLHAHL EMBL:AADN02023681 EMBL:AADN02023682 IPI:IPI00585704
Ensembl:ENSGALT00000008518 Uniprot:E1C0L7
Length = 254
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 40/120 (33%), Positives = 62/120 (51%)
Query: 282 VNKSKSLS--KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQ 339
+NK+ + S K + D + + Y ALV G + + I + K ++ G T + +
Sbjct: 77 LNKAAAGSAYKCFKD--RLVTKAYLALVRGHVDQSRMTIRYAIGKNTVE-GMTHMMCIEG 133
Query: 340 NSGLEASQEAMTEYRVLGP-MING--CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
G E + +E VL +G + + L+PLT R HQLRVHC+ A+G PIVGD+ Y
Sbjct: 134 TEGCENPKPCQSELIVLEHGSYSGDPVTKVLLQPLTGRTHQLRVHCS-AIGHPIVGDFTY 192
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 87 (35.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 343 LEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+E ++A++ YRVL + + ++ T R HQ+RVH A + P+VGD YG
Sbjct: 201 MEGGKQAVSHYRVL-ERFRSHTHVRVKLETGRTHQIRVHMAH-INFPLVGDPAYG 253
Score = 78 (32.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSY---DYNEGPK--LVHRLDRES 259
+ Y D ILV+NKP + + H P D + D P+ +VHRLD+++
Sbjct: 85 IVYEDDDILVINKPAGLVV--H-PAAGHADGTLLNALLHHIPDIINVPRAGIVHRLDKDT 141
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAW 292
+GL+++ +T + T L + + +S+S+S+ +
Sbjct: 142 TGLMVVAKT---IQAQTQLVAQL-QSRSVSRIY 170
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 87 (35.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 301 QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
+ Y A+VIG+ G+I P+ + T+R +++ + + A+T YRV
Sbjct: 169 REYEAIVIGT-MTAGGMIDKPIGR-----HSTKRTLMSVSP---MGKHAVTHYRV-AEHF 218
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ + LR T R HQ+RVH A L P++GD YG
Sbjct: 219 REHTRLRLRLETGRTHQIRVHMAY-LQHPLLGDTAYG 254
Score = 78 (32.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYN---EGPK--LVHRLDRES 259
+ Y D I+V+NKP + H P D + Y+ E P+ +VHRLD+++
Sbjct: 86 IVYEDDDIIVINKPRDFVV--H-PGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDT 142
Query: 260 SGLLLMGRT 268
+GL+++ +T
Sbjct: 143 TGLMVVAKT 151
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 87 (35.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 301 QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
+ Y A+VIG+ G+I P+ + T+R +++ + + A+T YRV
Sbjct: 169 REYEAIVIGT-MTAGGMIDKPIGR-----HSTKRTLMSVSP---MGKHAVTHYRV-AEHF 218
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ + LR T R HQ+RVH A L P++GD YG
Sbjct: 219 REHTRLRLRLETGRTHQIRVHMAY-LQHPLLGDTAYG 254
Score = 78 (32.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDXXXXXXXSYDYN---EGPK--LVHRLDRES 259
+ Y D I+V+NKP + H P D + Y+ E P+ +VHRLD+++
Sbjct: 86 IVYEDDDIIVINKPRDFVV--H-PGAGQADKTVLNALLFHYSPIAEVPRAGIVHRLDKDT 142
Query: 260 SGLLLMGRT 268
+GL+++ +T
Sbjct: 143 TGLMVVAKT 151
>TIGR_CMR|SPO_3392 [details] [associations]
symbol:SPO_3392 "ribosomal large subunit pseudouridine
synthase A" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
TIGRFAMs:TIGR00005 KO:K06177 OMA:CQIVHRL RefSeq:YP_168588.1
ProteinModelPortal:Q5LN20 SMR:Q5LN20 GeneID:3194821
KEGG:sil:SPO3392 PATRIC:23380239 ProtClustDB:CLSK934145
Uniprot:Q5LN20
Length = 215
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 42/146 (28%), Positives = 69/146 (47%)
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
L+ R+ G LL+ R S + + ++L + + + + Y A + G
Sbjct: 44 LLSRVQAAFPGALLVHRLDRDTSGVMVFAQTPHAQRNLGRQFEE--RKTRKTYVARLWGR 101
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ K G + PL ++D R ++ +G + A+T++RVL + + L P
Sbjct: 102 LEPKTGTVDLPL---IVDWPNRPRQMVCHETG----KPAVTDWRVLR-YEGDTTRVRLLP 153
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKY 396
T R HQLRVHC +ALG PI+GD Y
Sbjct: 154 RTGRSHQLRVHC-QALGHPILGDPFY 178
>DICTYBASE|DDB_G0280463 [details] [associations]
symbol:DDB_G0280463 "Ribosomal large subunit
pseudouridine synthase D" species:44689 "Dictyostelium discoideum"
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 SMART:SM00363
dictyBase:DDB_G0280463 GO:GO:0003723 EMBL:AAFI02000036
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 RefSeq:XP_641190.1 ProteinModelPortal:Q54VB9
EnsemblProtists:DDB0205216 GeneID:8622571 KEGG:ddi:DDB_G0280463
InParanoid:Q54VB9 OMA:VHMASEN Uniprot:Q54VB9
Length = 746
Score = 84 (34.6 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 301 QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVL 356
++Y +V+G PKE+ G I+ +S+ D K +++ Q++G +EA+TE++VL
Sbjct: 331 KKYHCIVLGKPKEQHGFINKKISRHPADKNK---MVIDQDNG----KEALTEFKVL 379
Score = 67 (28.6 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLF 279
E P +VHRLD++++G++++ R + L LF
Sbjct: 257 ERPGIVHRLDKDTAGMIIIARNNDVHQKLQTLF 289
Score = 64 (27.6 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
N S +E+ T R HQ+RVH A PIVGD Y
Sbjct: 545 NTFSLLEVTLHTGRSHQIRVHMASE-NIPIVGDPIY 579
>UNIPROTKB|H3BSG4 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL031033 HGNC:HGNC:14173
Ensembl:ENST00000565377 Bgee:H3BSG4 Uniprot:H3BSG4
Length = 173
Score = 110 (43.8 bits), Expect = 0.00037, P = 0.00037
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 340 NSGLEASQEAMTEYRVLGPMI---NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ G E + ++T+ VL + + S + L+PLT R HQLRVHC+ ALG P+VGD Y
Sbjct: 6 SQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCS-ALGHPVVGDLTY 64
Query: 397 G 397
G
Sbjct: 65 G 65
>UNIPROTKB|H3BMZ6 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AL031033 HGNC:HGNC:14173
Ensembl:ENST00000569601 Bgee:H3BMZ6 Uniprot:H3BMZ6
Length = 181
Score = 110 (43.8 bits), Expect = 0.00050, P = 0.00050
Identities = 27/60 (45%), Positives = 38/60 (63%)
Query: 341 SGLEASQEAMTEYRVLGPMI---NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+G E + ++T+ VL + + S + L+PLT R HQLRVHC+ ALG P+VGD YG
Sbjct: 10 AGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCS-ALGHPVVGDLTYG 68
>UNIPROTKB|H3BQN8 [details] [associations]
symbol:RPUSD1 "RNA pseudouridylate synthase
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR020103
Pfam:PF00849 GO:GO:0003723 EMBL:CH471112 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL031033 UniGene:Hs.101742
HGNC:HGNC:14173 SMR:H3BQN8 Ensembl:ENST00000567114 Uniprot:H3BQN8
Length = 183
Score = 110 (43.8 bits), Expect = 0.00054, P = 0.00054
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 340 NSGLEASQEAMTEYRVLGPMI---NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ G E + ++T+ VL + + S + L+PLT R HQLRVHC+ ALG P+VGD Y
Sbjct: 6 SQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCS-ALGHPVVGDLTY 64
Query: 397 G 397
G
Sbjct: 65 G 65
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 490 483 0.00080 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 62
No. of states in DFA: 622 (66 KB)
Total size of DFA: 326 KB (2164 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.17u 0.10s 40.27t Elapsed: 00:00:04
Total cpu time: 40.19u 0.10s 40.29t Elapsed: 00:00:04
Start: Fri May 10 09:21:51 2013 End: Fri May 10 09:21:55 2013