BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042463
(490 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225443375|ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
vinifera]
Length = 479
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/468 (76%), Positives = 400/468 (85%), Gaps = 29/468 (6%)
Query: 48 IRHYSRISPPRPA----VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHW--- 100
+RHYSRI+PPRPA VIRVS VA LG PK GPKPRQLLSLPPFP H LPGK
Sbjct: 16 VRHYSRIAPPRPASAAPVIRVSNN-VAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSLVNV 74
Query: 101 -GRQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVE-QGQMKPIRKIKT 158
G HVTA+SW+KYYFDE+ SV+QSHFNKGLV ME +N+ DS +E +GQ+KP+RKIK
Sbjct: 75 SGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKP 134
Query: 159 NEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKP 218
NEVME G RI++PVS+ E RISKR+DTIPSGTL+PNADEI+YL+RLV Y+D AILVLNKP
Sbjct: 135 NEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDPAILVLNKP 194
Query: 219 PKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWL 278
PKVPLKG+LPVHNSMDALAAAAL++DY EGPKLVHRLDRESSGLLLMGRTKESV+ L WL
Sbjct: 195 PKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWL 254
Query: 279 FSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILA 338
FSD+NK+KSLSKAW+DACEA QRYWALVIGSPK+K+G+IHAPLSKVLLDDGKTER+ILA
Sbjct: 255 FSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILA 314
Query: 339 QNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGW 398
SGLEASQEA+TEYRVLGPMINGCSWIEL P T RKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 315 NQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGW 374
Query: 399 FVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCREL--------- 449
FVHRRWKQMPRVD+EPT+GKPYK+RRP+GLDVQKGSVLSKVPLLHLHCREL
Sbjct: 375 FVHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFL 434
Query: 450 -------KSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 490
K+ N +P LS K PD+LRFVASMP+HMKISWNLMSSYLV
Sbjct: 435 PILDPKPKNQNQYPKLSLK---PDILRFVASMPNHMKISWNLMSSYLV 479
>gi|297735761|emb|CBI18448.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/470 (76%), Positives = 401/470 (85%), Gaps = 31/470 (6%)
Query: 48 IRHYSRISPPRPA----VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHW--- 100
+RHYSRI+PPRPA VIRVS VA LG PK GPKPRQLLSLPPFP H LPGK
Sbjct: 16 VRHYSRIAPPRPASAAPVIRVSNN-VAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSLVNV 74
Query: 101 -GRQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVE-QGQMKPIRKIKT 158
G HVTA+SW+KYYFDE+ SV+QSHFNKGLV ME +N+ DS +E +GQ+KP+RKIK
Sbjct: 75 SGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKP 134
Query: 159 NEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRL--VKYRDSAILVLN 216
NEVME G RI++PVS+ E RISKR+DTIPSGTL+PNADEI+YL+RL +K++D AILVLN
Sbjct: 135 NEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQDPAILVLN 194
Query: 217 KPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLT 276
KPPKVPLKG+LPVHNSMDALAAAAL++DY EGPKLVHRLDRESSGLLLMGRTKESV+ L
Sbjct: 195 KPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLH 254
Query: 277 WLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERII 336
WLFSD+NK+KSLSKAW+DACEA QRYWALVIGSPK+K+G+IHAPLSKVLLDDGKTER+I
Sbjct: 255 WLFSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVI 314
Query: 337 LAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
LA SGLEASQEA+TEYRVLGPMINGCSWIEL P T RKHQLRVHCAEALGTPIVGDYKY
Sbjct: 315 LANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKY 374
Query: 397 GWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCREL------- 449
GWFVHRRWKQMPRVD+EPT+GKPYK+RRP+GLDVQKGSVLSKVPLLHLHCREL
Sbjct: 375 GWFVHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAK 434
Query: 450 ---------KSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 490
K+ N +P LS K PD+LRFVASMP+HMKISWNLMSSYLV
Sbjct: 435 FLPILDPKPKNQNQYPKLSLK---PDILRFVASMPNHMKISWNLMSSYLV 481
>gi|449441766|ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/464 (70%), Positives = 380/464 (81%), Gaps = 20/464 (4%)
Query: 45 LSSIRHYSRISPPRPA----VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHW 100
L + R YSRISPP PA +IRVS +A LG PK GPK RQLLSLPPFPG+ LPGK+
Sbjct: 10 LLATRCYSRISPPPPAYAKPIIRVSNN-IAQLGSPKEGPKARQLLSLPPFPGYPLPGKNQ 68
Query: 101 ----GRQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKI 156
G HVTA+ WVKYYFDE+QDS IQSHF KGLVQ+EC +G E+G +KP+RKI
Sbjct: 69 VGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLG-GLDEKGNLKPMRKI 127
Query: 157 KTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLN 216
++ E+ME GARI LPVS+ E ++++R+DTIPSGTL PNADEI YL+RLVKY+DSAI+VLN
Sbjct: 128 RSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYKDSAIIVLN 187
Query: 217 KPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLT 276
KPPK+P+KG LPVHNSMDALA AALSYDY++GPKLVHRLDRESSG+LLMGRTKESV L
Sbjct: 188 KPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTKESVDHLQ 247
Query: 277 WLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERII 336
WLFS++ +K KAW +AC A YQ+YWALVIG P+E++G+I APLSKVLLDDGKTER++
Sbjct: 248 WLFSNIRNAKFTCKAWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVV 307
Query: 337 LAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
LA + +EASQEA+TEYRVLGP INGCSWIEL P T RKHQLR+HCAEALGTPIVGDYKY
Sbjct: 308 LANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKY 367
Query: 397 GWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFP 456
GWFVHRRWKQMPRVD+EP SG+PYKLRRP+GLDVQKGSVLSKVPLLHLHCREL N+
Sbjct: 368 GWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAK 427
Query: 457 TLS----SKPDGP------DLLRFVASMPSHMKISWNLMSSYLV 490
L+ P+ P DLLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 428 FLNVFYGKGPNRPVSSFDSDLLRFVARMPSHMRISWNLMSSYLV 471
>gi|449490137|ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/464 (71%), Positives = 380/464 (81%), Gaps = 20/464 (4%)
Query: 45 LSSIRHYSRISPPRPA----VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHW 100
L + R YSRISPP PA +IRVS +A LG PK GPK RQLLSLPPFPG+ LPGK+
Sbjct: 10 LLATRCYSRISPPPPAYAKPIIRVSNN-IAQLGSPKEGPKARQLLSLPPFPGYPLPGKNQ 68
Query: 101 ----GRQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKI 156
G HVTA+ WVKYYFDE+QDS IQSHF KGLVQ+EC +G E+G +KP+RKI
Sbjct: 69 VGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLG-GLDEKGNLKPMRKI 127
Query: 157 KTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLN 216
++ E+ME GARI LPVS+ E ++++R+DTIPSGTL PNADEI YL+RLVKY+DSAI+VLN
Sbjct: 128 RSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYKDSAIIVLN 187
Query: 217 KPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLT 276
KPPK+P+KG LPVHNSMDALA AALSYDY++GPKLVHRLDRESSG+LLMGRTKESV L
Sbjct: 188 KPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTKESVDHLQ 247
Query: 277 WLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERII 336
WLFS++ +K KAW +AC A YQ+YWALVIG P+E++G+I APLSKVLLDDGKTER+I
Sbjct: 248 WLFSNIRNAKFTCKAWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKTERVI 307
Query: 337 LAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
LA + +EASQEA+TEYRVLGP INGCSWIEL P T RKHQLR+HCAEALGTPIVGDYKY
Sbjct: 308 LANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKY 367
Query: 397 GWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFP 456
GWFVHRRWKQMPRVD+EP SG+PYKLRRP+GLDVQKGSVLSKVPLLHLHCREL N+
Sbjct: 368 GWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAK 427
Query: 457 TLS----SKPDGP------DLLRFVASMPSHMKISWNLMSSYLV 490
L+ P+ P DLLRFVA MPSHM+ISWNLMSSYLV
Sbjct: 428 FLNVFYGKGPNRPVSSFDSDLLRFVARMPSHMRISWNLMSSYLV 471
>gi|356562211|ref|XP_003549365.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Glycine
max]
Length = 554
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/467 (72%), Positives = 382/467 (81%), Gaps = 23/467 (4%)
Query: 44 WLSSI-RHYSRISPPRPA----VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGK 98
WL + RHYSRI PPRP VI VS +A L PK GPKPRQLLSLPPFPGH LP K
Sbjct: 91 WLLFVARHYSRIQPPRPVSVEPVISVSNN-IARLDAPKEGPKPRQLLSLPPFPGHPLPDK 149
Query: 99 H---WGRQ-CHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIR 154
RQ +VTAV+W+KYYF SVI+SHF +GLVQME + S ++ QMKP+R
Sbjct: 150 SSISGSRQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEADD--SSTQKEEQMKPMR 207
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
KI+ NEVM+ GAR+ +PVS+ E RISKRYD IPSGTL PNADEI YL+RLV Y+DSAI+V
Sbjct: 208 KIRPNEVMKRGARVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIV 267
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
LNKPPK+P+KG LPVHNSMDALAAAALSYDY+EGPKLVHRLDRESSG+LL+GRTK+SVS
Sbjct: 268 LNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSH 327
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
L WLFS++N +KS K WN+ACEA YQRYWALVIG+PKEK+GIIHAPLSKVLL+DGKTER
Sbjct: 328 LQWLFSNINNAKSSCKDWNEACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTER 387
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
IILA +S +E QEA+TEYRVLGP INGCSW+ELRPLT RKHQLRVHCAEALGTPIVGDY
Sbjct: 388 IILAHHSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDY 447
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KYGWFVH RWKQMPRVDIEPT+GKPYKLRRP+GLDVQKGSVLSKVPLLHLHCREL N+
Sbjct: 448 KYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNI 507
Query: 455 FPTL-----------SSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 490
+ +S + PD+LRFVA+MPSHM+ISWNLMSSYLV
Sbjct: 508 VKFMHVLNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLMSSYLV 554
>gi|42563328|ref|NP_178012.2| RNA pseudourine synthase 3 [Arabidopsis thaliana]
gi|75110951|sp|Q5XET6.1|PUS3_ARATH RecName: Full=RNA pseudourine synthase 3, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 3; AltName:
Full=RNA-uridine isomerase 3; Flags: Precursor
gi|53850479|gb|AAU95416.1| At1g78910 [Arabidopsis thaliana]
gi|56790228|gb|AAW30031.1| At1g78910 [Arabidopsis thaliana]
gi|332198052|gb|AEE36173.1| RNA pseudourine synthase 3 [Arabidopsis thaliana]
Length = 478
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/479 (69%), Positives = 388/479 (81%), Gaps = 24/479 (5%)
Query: 35 MWKKQAEF--IWLSS-IRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFP 91
MWK + F I+L+ IR YSR++PP +VIRV+ VAHLGPPK GP PRQL+SLPPFP
Sbjct: 1 MWKAKTCFRQIYLTVLIRRYSRVAPPPSSVIRVTNN-VAHLGPPKQGPLPRQLISLPPFP 59
Query: 92 GHNLPGKHWGRQC-------HVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSF 144
GH LPGK+ G HVTA+SWVKYYF+E+ D IQ+HF KGLVQME D+
Sbjct: 60 GHPLPGKNAGADGDDGDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDAS 119
Query: 145 VE-QGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRR 203
E + P+RKIK NEVM+ G +I+LPVS+ E RISKRYDTIPSGTL PNADEI YL+R
Sbjct: 120 REKEDGAIPMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQR 179
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
LV+++DSAI+VLNKPPK+P+KG++P+HNSMDALAAAALS+ +EGP+LVHRLDRE+SGLL
Sbjct: 180 LVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLL 239
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
+MGRTKES+ L +FSD S KAWN ACEAMYQ+YWALVIGSPKEK+G+I APLS
Sbjct: 240 VMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLS 299
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
KVLLDDGKT+R++LAQ SG EASQ+A+TEY+VLGP INGCSW+ELRP+T RKHQLRVHCA
Sbjct: 300 KVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCA 359
Query: 384 EALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLH 443
EALGTPIVGDYKYGWFVH+RWKQMP+VDIEPT+GKPYKLRRP+GLDVQKGSVLSKVPLLH
Sbjct: 360 EALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLH 419
Query: 444 LHCRELKSDNLF------------PTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 490
LHCRE+ N+ P + D PDLLRFVASMPSHMKISWNLMSSYLV
Sbjct: 420 LHCREMVLPNIAKFLHVMNQQETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 478
>gi|297839759|ref|XP_002887761.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
lyrata]
gi|297333602|gb|EFH64020.1| hypothetical protein ARALYDRAFT_477057 [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/478 (69%), Positives = 387/478 (80%), Gaps = 23/478 (4%)
Query: 35 MWKKQAEF--IWLSSI-RHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFP 91
MWK + F I+L + R YSR++PP +V+RV+ +AHLGPPK GP PRQL+SLPPFP
Sbjct: 1 MWKAKTCFRQIFLGVVTRRYSRVAPPPSSVLRVTNN-IAHLGPPKQGPLPRQLISLPPFP 59
Query: 92 GHNLPGKHWG------RQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFV 145
G+ LPGK+ G HVTA+SWVK+YF+E+ D IQ+HF KGLVQME D+
Sbjct: 60 GYPLPGKNAGVDGDEGDSGHVTAISWVKFYFEEIHDKAIQTHFTKGLVQMEFRGRRDASR 119
Query: 146 E-QGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRL 204
E + P+RKIK NEVME G +I+LPVS+ E RISKRYDTIPSGTL PNADEI YL+RL
Sbjct: 120 ENEDGAIPMRKIKHNEVMEIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRL 179
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
V+++DSAI+VLNKPPK+P+KG++P+HNSMDALAAAALS+ +EGP+LVHRLDRE+SGLL+
Sbjct: 180 VRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGKDEGPRLVHRLDRETSGLLV 239
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
MGR+KES+ L +FSD S KAWN ACEAMYQ+YWALVIGSPKEK+G+I APLSK
Sbjct: 240 MGRSKESIHYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLSK 299
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
VLLDDGKT+R++LAQ SG EASQEA+TEYRVLGPMINGCSW+ELRP+T RKHQLRVHCAE
Sbjct: 300 VLLDDGKTDRVVLAQGSGFEASQEAITEYRVLGPMINGCSWLELRPITSRKHQLRVHCAE 359
Query: 385 ALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHL 444
ALGT IVGDYKYGWFVH+RWKQMP+VDIEPT+GKPYKLRRP+GLDVQKGSVLSKVPLLHL
Sbjct: 360 ALGTSIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHL 419
Query: 445 HCRELKSDNLF------------PTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 490
HCRE+ N+ P + D PDLLRFVASMPSHMKISWNLMSSYLV
Sbjct: 420 HCREMVLPNIAKFLHVLNQQETEPLRTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 477
>gi|255571790|ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223533842|gb|EEF35573.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 468
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/474 (74%), Positives = 390/474 (82%), Gaps = 24/474 (5%)
Query: 35 MWKKQAEFIWLSSIRHYSRISPPRPA----VIRVSEKKVAHLGPPKAGPKPRQLLSLPPF 90
MWK +S R YSRI+PP PA VIRVS VAHLG PK GPKPRQLLSLPPF
Sbjct: 1 MWKNIYCRRVVSQGRSYSRIAPPPPAYANPVIRVSNN-VAHLGSPKDGPKPRQLLSLPPF 59
Query: 91 PGHNLPGKHWGRQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQM 150
PG LPG++ HVTA+SWVKYYFDE+ DS IQSHFNKGL +EC N G +E G
Sbjct: 60 PGLPLPGRN-SMASHVTAISWVKYYFDEILDSAIQSHFNKGLAHIECPN-GSGSIEYGGQ 117
Query: 151 KPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDS 210
+RKIK N++ME GAR+ + VS+ E RISKR+DTIPSGTL PNADEI YL+RLVKY+DS
Sbjct: 118 MSLRKIKHNDIMEAGARVHVAVSVAETRISKRFDTIPSGTLYPNADEIQYLQRLVKYKDS 177
Query: 211 AILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKE 270
AI+VLNKPP++P+KG+LP+HNSMDALAAAALSYDY+EGPKLV RLDRESSGLLLMGRTKE
Sbjct: 178 AIIVLNKPPRLPVKGNLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLLLMGRTKE 237
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
S+ L WLFSDVNKS S KAWNDAC+A YQRYWALVIGSPKEK+G+I APLSKVLL+DG
Sbjct: 238 SIDHLQWLFSDVNKSNSRCKAWNDACKATYQRYWALVIGSPKEKEGLIRAPLSKVLLNDG 297
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
KTER++LAQ+SGLEASQEA+TEYRVLGP INGCSWIELRPLT RKHQLRVHCAEALGTPI
Sbjct: 298 KTERVVLAQHSGLEASQEALTEYRVLGPRINGCSWIELRPLTSRKHQLRVHCAEALGTPI 357
Query: 391 VGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCREL- 449
VGDYKYGW VH+RWKQMPRVDIEP SGKPYKLRRP GLDVQKGSVLSKVPLLHLHCRE
Sbjct: 358 VGDYKYGWCVHQRWKQMPRVDIEPFSGKPYKLRRPAGLDVQKGSVLSKVPLLHLHCREFV 417
Query: 450 -------------KSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 490
KS+N+ P L +K PDLLRFVASMP+HMKISWNLMSSYLV
Sbjct: 418 LPNIAKFLAVLNEKSENIHPALDAK---PDLLRFVASMPTHMKISWNLMSSYLV 468
>gi|3834304|gb|AAC83020.1| Contains similarity to gi|1786244 hypothetical 24.9 kD protein in
surA-hepA intergenic region yab0 from Escherichia coli
genome gb|AE000116, and to hypothetical YABO family
PF|00849 [Arabidopsis thaliana]
Length = 491
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/492 (67%), Positives = 388/492 (78%), Gaps = 37/492 (7%)
Query: 35 MWKKQAEF--IWLSS-IRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFP 91
MWK + F I+L+ IR YSR++PP +VIRV+ VAHLGPPK GP PRQL+SLPPFP
Sbjct: 1 MWKAKTCFRQIYLTVLIRRYSRVAPPPSSVIRVTNN-VAHLGPPKQGPLPRQLISLPPFP 59
Query: 92 GHNLPGKHWGRQC-------HVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSF 144
GH LPGK+ G HVTA+SWVKYYF+E+ D IQ+HF KGLVQME D+
Sbjct: 60 GHPLPGKNAGADGDDGDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDAS 119
Query: 145 VE-QGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRR 203
E + P+RKIK NEVM+ G +I+LPVS+ E RISKRYDTIPSGTL PNADEI YL+R
Sbjct: 120 REKEDGAIPMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQR 179
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLV-------HRLD 256
LV+++DSAI+VLNKPPK+P+KG++P+HNSMDALAAAALS+ +EGP+LV HRLD
Sbjct: 180 LVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVKLTFLGVHRLD 239
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
RE+SGLL+MGRTKES+ L +FSD S KAWN ACEAMYQ+YWALVIGSPKEK+G
Sbjct: 240 RETSGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEG 299
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+I APLSKVLLDDGKT+R++LAQ SG EASQ+A+TEY+VLGP INGCSW+ELRP+T RKH
Sbjct: 300 LISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKH 359
Query: 377 ------QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDV 430
QLRVHCAEALGTPIVGDYKYGWFVH+RWKQMP+VDIEPT+GKPYKLRRP+GLDV
Sbjct: 360 QPPSKKQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRPEGLDV 419
Query: 431 QKGSVLSKVPLLHLHCRELKSDNLF------------PTLSSKPDGPDLLRFVASMPSHM 478
QKGSVLSKVPLLHLHCRE+ N+ P + D PDLLRFVASMPSHM
Sbjct: 420 QKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQETEPLHTGIIDKPDLLRFVASMPSHM 479
Query: 479 KISWNLMSSYLV 490
KISWNLMSSYLV
Sbjct: 480 KISWNLMSSYLV 491
>gi|125604035|gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
Length = 509
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 298/447 (66%), Positives = 349/447 (78%), Gaps = 16/447 (3%)
Query: 60 AVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHWGRQC----HVTAVSWVKYY 115
V+RV VA LG PK GP+PRQLLSLPPFPG GR+ VTAVSWVK+Y
Sbjct: 63 VVVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPGRKAAAPRRVTAVSWVKHY 122
Query: 116 FDEVQDSVIQSHFNKGLVQMECANMGDSF-VEQGQMKPIRKIKTNEVMEPGARIFLPVSM 174
+V V+Q+HFNK LV EC++ S + Q ++KIK N+VMEPG RI LPVS+
Sbjct: 123 LADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSV 182
Query: 175 VEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMD 234
EG I KRY+TIP+ TL+PN DEI+YLRRLV ++DSAILVLNKPPKVP+KG+LPVHNSMD
Sbjct: 183 AEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMD 242
Query: 235 ALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWND 294
LAAAALSY EGPKLVHRLDRESSGLLL GRTKES + L WLF+ VN +K+ S+ WN
Sbjct: 243 VLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWNA 302
Query: 295 ACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYR 354
ACEA QRYWALVIG+PKE++GII APLSKVLLDDGK ER+ILA SG++ +QEA+T YR
Sbjct: 303 ACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYR 362
Query: 355 VLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEP 414
V+GP I+GCSWIELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWKQ P+ D EP
Sbjct: 363 VMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEP 422
Query: 415 TSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK-----------PD 463
+G+PYKLRRP+GL++QKGSVLSKVPLLHLHCRE+ N+ LSS +
Sbjct: 423 FTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKE 482
Query: 464 GPDLLRFVASMPSHMKISWNLMSSYLV 490
P+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 483 KPNLLRFIAPMPAHMKISWNIMSSYLV 509
>gi|115477338|ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group]
gi|122234516|sp|Q0J4D4.1|PUS3_ORYSJ RecName: Full=RNA pseudourine synthase 3, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 3; AltName:
Full=RNA-uridine isomerase 3; Flags: Precursor
gi|113624234|dbj|BAF24179.1| Os08g0520100 [Oryza sativa Japonica Group]
gi|125562210|gb|EAZ07658.1| hypothetical protein OsI_29911 [Oryza sativa Indica Group]
Length = 475
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 298/447 (66%), Positives = 349/447 (78%), Gaps = 16/447 (3%)
Query: 60 AVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHWGRQC----HVTAVSWVKYY 115
V+RV VA LG PK GP+PRQLLSLPPFPG GR+ VTAVSWVK+Y
Sbjct: 29 VVVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPGRKAAAPRRVTAVSWVKHY 88
Query: 116 FDEVQDSVIQSHFNKGLVQMECANMGDSF-VEQGQMKPIRKIKTNEVMEPGARIFLPVSM 174
+V V+Q+HFNK LV EC++ S + Q ++KIK N+VMEPG RI LPVS+
Sbjct: 89 LADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSV 148
Query: 175 VEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMD 234
EG I KRY+TIP+ TL+PN DEI+YLRRLV ++DSAILVLNKPPKVP+KG+LPVHNSMD
Sbjct: 149 AEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMD 208
Query: 235 ALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWND 294
LAAAALSY EGPKLVHRLDRESSGLLL GRTKES + L WLF+ VN +K+ S+ WN
Sbjct: 209 VLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWNA 268
Query: 295 ACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYR 354
ACEA QRYWALVIG+PKE++GII APLSKVLLDDGK ER+ILA SG++ +QEA+T YR
Sbjct: 269 ACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYR 328
Query: 355 VLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEP 414
V+GP I+GCSWIELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWKQ P+ D EP
Sbjct: 329 VMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEP 388
Query: 415 TSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK-----------PD 463
+G+PYKLRRP+GL++QKGSVLSKVPLLHLHCRE+ N+ LSS +
Sbjct: 389 FTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKE 448
Query: 464 GPDLLRFVASMPSHMKISWNLMSSYLV 490
P+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 449 KPNLLRFIAPMPAHMKISWNIMSSYLV 475
>gi|413921570|gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
Length = 478
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/444 (65%), Positives = 343/444 (77%), Gaps = 19/444 (4%)
Query: 63 RVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHN--LPGKHWGRQCHVTAVSWVKYYFDEVQ 120
RV VA LG PK P+PRQLLSLPPFP LPG+ + VTAVSWVK+YF +V
Sbjct: 38 RVDANNVARLGAPKPRPRPRQLLSLPPFPAGQDPLPGRKVAPR-RVTAVSWVKHYFADVP 96
Query: 121 DSVIQSHFNKGLVQMECANM---GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEG 177
+Q+HFN+ +V EC + DS Q ++KIK N+ MEPG RI LPVS+ E
Sbjct: 97 QEAVQAHFNRRMVFSECYDHKVSADSIRTQKHH--LKKIKHNDAMEPGMRIHLPVSVAES 154
Query: 178 RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALA 237
I KRY+TIP+ TL+PN DEI+YLRRLV YRDSAILVLNKPPKVP+KGHLPVHNSMD LA
Sbjct: 155 DIKKRYETIPTATLHPNKDEIEYLRRLVIYRDSAILVLNKPPKVPMKGHLPVHNSMDVLA 214
Query: 238 AAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACE 297
AAALSY EGPKLVHRLDRESSGL+LMGRTKES + L WL + VN +++ S+ WN ACE
Sbjct: 215 AAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLTSVNLARTSSQTWNKACE 274
Query: 298 AMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG 357
A Q+YWALVIG+PKE++G+I AP+SKVLLDDGK ER+ILA SG++ +QEA+TEYRV+G
Sbjct: 275 AYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPSGIDGAQEAITEYRVMG 334
Query: 358 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSG 417
P INGCSWIEL+PLT RKHQLRVHCAEALGTPIVGDYKYGWFVH+ WKQ P+ D EP +G
Sbjct: 335 PTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQTWKQNPQPDFEPFTG 394
Query: 418 KPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK-----------PDGPD 466
+PYKLRRP+GL++QKGSVLSKVPLLHLHCRE+ N+ LSS + P+
Sbjct: 395 EPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSTGGWHENGTPWAKEKPN 454
Query: 467 LLRFVASMPSHMKISWNLMSSYLV 490
LLRFVA MP HMKISWN+MSSYLV
Sbjct: 455 LLRFVAPMPPHMKISWNIMSSYLV 478
>gi|357141930|ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like
[Brachypodium distachyon]
Length = 479
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 292/448 (65%), Positives = 346/448 (77%), Gaps = 18/448 (4%)
Query: 61 VIRV-SEKKVAHLGPPKAGPKPRQLLSLPPFPGHN--LPGKHWGR---QCHVTAVSWVKY 114
V+RV S VA LG PK GP+PRQLLSLPPFP LPG+ V+AVSWVK+
Sbjct: 32 VVRVESGSNVARLGAPKPGPRPRQLLSLPPFPAGADPLPGRKTAAAEASRRVSAVSWVKH 91
Query: 115 YFDEVQDSVIQSHFNKGLVQMECANMGDSFVE-QGQMKPIRKIKTNEVMEPGARIFLPVS 173
F +V V+Q+HFNK V EC++ S V + Q ++KIK +EVMEPG RI LPVS
Sbjct: 92 CFADVPQEVVQAHFNKRQVFAECSDQEVSAVSIRSQEHHLKKIKHSEVMEPGMRIHLPVS 151
Query: 174 MVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSM 233
+ E I KRY+TIP+ TL+PN DEI+YL+RLV Y+DSAILVLNKPPKVP+KGHLPVHNSM
Sbjct: 152 VAEAEIKKRYETIPAATLHPNKDEIEYLKRLVIYKDSAILVLNKPPKVPMKGHLPVHNSM 211
Query: 234 DALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWN 293
D LAAAALSY +GPKLVHRLDR++SGLLLMGRTKES + L WLF+ V +++ S WN
Sbjct: 212 DVLAAAALSYGNEDGPKLVHRLDRDTSGLLLMGRTKESFTRLHWLFTSVKLARTASPIWN 271
Query: 294 DACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEY 353
ACE+ QRYWALVIG+PKE +G+I APL+KVLLDDGK ER+ILA SG++ +QEA+TEY
Sbjct: 272 SACESYLQRYWALVIGTPKESEGVISAPLTKVLLDDGKAERVILAHPSGIDGAQEAVTEY 331
Query: 354 RVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIE 413
RV+GP INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWKQ P+ D E
Sbjct: 332 RVMGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFE 391
Query: 414 PTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPD---------- 463
P +G+ YKLRRP+GL+VQKGSVLSKVPLLHLHCRE+ N+ LS+ D
Sbjct: 392 PFTGEQYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPNIAKFLSNTGDWHDDGTPWSK 451
Query: 464 -GPDLLRFVASMPSHMKISWNLMSSYLV 490
P+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 452 EKPNLLRFIAPMPAHMKISWNIMSSYLV 479
>gi|51970580|dbj|BAD43982.1| unnamed protein product [Arabidopsis thaliana]
Length = 326
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/325 (76%), Positives = 282/325 (86%), Gaps = 12/325 (3%)
Query: 178 RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALA 237
RISKRYDTIPSGTL PNADEI YL+RLV+++DSAI+VLNKPPK+P+KG++P+HNSMDALA
Sbjct: 2 RISKRYDTIPSGTLYPNADEIAYLQRLVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALA 61
Query: 238 AAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACE 297
AAALS+ +EGP+LVHRLDRE+SGLL+MGRTKES+ L +FSD S KAWN ACE
Sbjct: 62 AAALSFGNDEGPRLVHRLDRETSGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACE 121
Query: 298 AMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG 357
AMYQ+YWALVIGSPKEK+G+I APLSKVLLDDGKT+R++LAQ SG EASQ+A+TEY+VLG
Sbjct: 122 AMYQQYWALVIGSPKEKEGLISAPLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLG 181
Query: 358 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSG 417
P INGCSW+ELRP+T RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWKQMP+VDIEPT+G
Sbjct: 182 PKINGCSWVELRPITSRKHQLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTG 241
Query: 418 KPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLF------------PTLSSKPDGP 465
KPYKLRRP+GLDVQKGSVLSKVPLLHLHCRE+ N+ P + D P
Sbjct: 242 KPYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVMNQQETEPLHTGIIDKP 301
Query: 466 DLLRFVASMPSHMKISWNLMSSYLV 490
DLLRFVASMPSHMKISWNLMSSYLV
Sbjct: 302 DLLRFVASMPSHMKISWNLMSSYLV 326
>gi|326522893|dbj|BAJ88492.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 357
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/353 (68%), Positives = 290/353 (82%), Gaps = 11/353 (3%)
Query: 149 QMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYR 208
Q +++IK +EVMEPG RI LPVS+ E I KRY+TIP+ TL+PN DEI+YL+RLV Y+
Sbjct: 5 QKHHLKRIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYK 64
Query: 209 DSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRT 268
DSAILVLNKPPKVP+KG+LPVHNSMD LAAAALS+ EGPKLVHRLDR+SSGLLLMGRT
Sbjct: 65 DSAILVLNKPPKVPMKGNLPVHNSMDVLAAAALSFGNEEGPKLVHRLDRDSSGLLLMGRT 124
Query: 269 KESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLD 328
+E + L WLF+ + +K+ S+ WN ACE+ QRYWALVIG+P E +G+I APL+KVLLD
Sbjct: 125 REGFTRLHWLFTSIKLAKTASQTWNTACESYLQRYWALVIGTPTESEGVISAPLTKVLLD 184
Query: 329 DGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGT 388
DGK ER+ILA SG++ +QEA+TEYRV+GP INGCSWIELRPLT RKHQLRVHCAEALGT
Sbjct: 185 DGKAERVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGT 244
Query: 389 PIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRE 448
PIVGDYKYGWFVH+RWKQ P+ D EP +G+PYKLRRP+GL+VQKGSVLSKVPLLHLHCRE
Sbjct: 245 PIVGDYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEVQKGSVLSKVPLLHLHCRE 304
Query: 449 LKSDNLFPTLSS-----------KPDGPDLLRFVASMPSHMKISWNLMSSYLV 490
+ N+ LS+ + P+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 305 MVVPNIAKFLSNTGEWHDNGTPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 357
>gi|42408521|dbj|BAD09700.1| putative ribosomal large subunit pseudouridine synthase C protein
[Oryza sativa Japonica Group]
gi|42409169|dbj|BAD10435.1| putative ribosomal large subunit pseudouridine synthase C protein
[Oryza sativa Japonica Group]
Length = 340
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 246/340 (72%), Positives = 284/340 (83%), Gaps = 11/340 (3%)
Query: 162 MEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKV 221
MEPG RI LPVS+ EG I KRY+TIP+ TL+PN DEI+YLRRLV ++DSAILVLNKPPKV
Sbjct: 1 MEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKV 60
Query: 222 PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSD 281
P+KG+LPVHNSMD LAAAALSY EGPKLVHRLDRESSGLLL GRTKES + L WLF+
Sbjct: 61 PMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTS 120
Query: 282 VNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNS 341
VN +K+ S+ WN ACEA QRYWALVIG+PKE++GII APLSKVLLDDGK ER+ILA S
Sbjct: 121 VNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPS 180
Query: 342 GLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVH 401
G++ +QEA+T YRV+GP I+GCSWIELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH
Sbjct: 181 GIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240
Query: 402 RRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK 461
+RWKQ P+ D EP +G+PYKLRRP+GL++QKGSVLSKVPLLHLHCRE+ N+ LSS
Sbjct: 241 QRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSN 300
Query: 462 -----------PDGPDLLRFVASMPSHMKISWNLMSSYLV 490
+ P+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 301 GEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 340
>gi|413921569|gb|AFW61501.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
Length = 340
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/340 (71%), Positives = 282/340 (82%), Gaps = 11/340 (3%)
Query: 162 MEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKV 221
MEPG RI LPVS+ E I KRY+TIP+ TL+PN DEI+YLRRLV YRDSAILVLNKPPKV
Sbjct: 1 MEPGMRIHLPVSVAESDIKKRYETIPTATLHPNKDEIEYLRRLVIYRDSAILVLNKPPKV 60
Query: 222 PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSD 281
P+KGHLPVHNSMD LAAAALSY EGPKLVHRLDRESSGL+LMGRTKES + L WL +
Sbjct: 61 PMKGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLTS 120
Query: 282 VNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNS 341
VN +++ S+ WN ACEA Q+YWALVIG+PKE++G+I AP+SKVLLDDGK ER+ILA S
Sbjct: 121 VNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPS 180
Query: 342 GLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVH 401
G++ +QEA+TEYRV+GP INGCSWIEL+PLT RKHQLRVHCAEALGTPIVGDYKYGWFVH
Sbjct: 181 GIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240
Query: 402 RRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK 461
+ WKQ P+ D EP +G+PYKLRRP+GL++QKGSVLSKVPLLHLHCRE+ N+ LSS
Sbjct: 241 QTWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSST 300
Query: 462 -----------PDGPDLLRFVASMPSHMKISWNLMSSYLV 490
+ P+LLRFVA MP HMKISWN+MSSYLV
Sbjct: 301 GGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSSYLV 340
>gi|242079953|ref|XP_002444745.1| hypothetical protein SORBIDRAFT_07g027030 [Sorghum bicolor]
gi|241941095|gb|EES14240.1| hypothetical protein SORBIDRAFT_07g027030 [Sorghum bicolor]
Length = 439
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 268/444 (60%), Positives = 313/444 (70%), Gaps = 58/444 (13%)
Query: 63 RVSEKKVAHLGPPKAGPKPRQLLSLPPFPG--HNLPGKHWGRQCHVTAVSWVKYYFDEVQ 120
RV VA LGPPK GP+PRQLLSLP FP LPG+ + VT VSWVK+YF +V
Sbjct: 38 RVDASNVARLGPPKPGPRPRQLLSLPAFPAGLDPLPGRKAAPR-RVTVVSWVKHYFADVP 96
Query: 121 DSVIQSHFNKGLVQMECANM---GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEG 177
+Q+HFN+ V EC++ DS + Q ++KIK N+ MEPG RI LPVS+ EG
Sbjct: 97 HEAVQAHFNRRTVFSECSDHEVSADSI--RTQKHHLKKIKHNDAMEPGMRIHLPVSVAEG 154
Query: 178 RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALA 237
I KRY+TIP+ TL+PN DEI+YLRRLV +RDSAILVLNKPPKVP+KGHLPVHNSMD LA
Sbjct: 155 EIKKRYETIPTATLHPNKDEIEYLRRLVIHRDSAILVLNKPPKVPMKGHLPVHNSMDVLA 214
Query: 238 AAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACE 297
AAALSY EGPKL WN ACE
Sbjct: 215 AAALSYGNKEGPKLT---------------------------------------WNKACE 235
Query: 298 AMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG 357
A Q+YWALVIG+PKE++G+I AP+SKVLLDDGK ER+ILA SG++ +QEA+TEYRV+G
Sbjct: 236 AYVQKYWALVIGTPKEREGVICAPISKVLLDDGKAERVILAHPSGIDGAQEAITEYRVMG 295
Query: 358 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSG 417
P INGCSWIELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH+ WKQ P+ D EP +G
Sbjct: 296 PTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQTWKQNPQPDFEPFTG 355
Query: 418 KPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK-----------PDGPD 466
+PYKLRRP+GL++QKGSVLSKVPLLHLHCRE+ N+ LSS + P+
Sbjct: 356 EPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSTGEWHENGAPWAKEKPN 415
Query: 467 LLRFVASMPSHMKISWNLMSSYLV 490
LLRFVA MP HMKISWN+MSSYLV
Sbjct: 416 LLRFVAPMPPHMKISWNIMSSYLV 439
>gi|293331663|ref|NP_001167875.1| uncharacterized protein LOC100381582 [Zea mays]
gi|223944581|gb|ACN26374.1| unknown [Zea mays]
Length = 237
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 161/237 (67%), Positives = 192/237 (81%), Gaps = 11/237 (4%)
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
MGRTKES + L WL + VN +++ S+ WN ACEA Q+YWALVIG+PKE++G+I AP+SK
Sbjct: 1 MGRTKESFTRLHWLLTSVNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISK 60
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
VLLDDGK ER+ILA SG++ +QEA+TEYRV+GP INGCSWIEL+PLT RKHQLRVHCAE
Sbjct: 61 VLLDDGKAERVILAHPSGIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAE 120
Query: 385 ALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHL 444
ALGTPIVGDYKYGWFVH+ WKQ P+ D EP +G+PYKLRRP+GL++QKGSVLSKVPLLHL
Sbjct: 121 ALGTPIVGDYKYGWFVHQTWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHL 180
Query: 445 HCRELKSDNLFPTLSSK-----------PDGPDLLRFVASMPSHMKISWNLMSSYLV 490
HCRE+ N+ LSS + P+LLRFVA MP HMKISWN+MSSYLV
Sbjct: 181 HCREMVIPNIAKFLSSTGGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSSYLV 237
>gi|225428918|ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
vinifera]
gi|296090438|emb|CBI40257.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 253/395 (64%), Gaps = 24/395 (6%)
Query: 106 VTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVE-QGQMKPIRKIKTNEVMEP 164
TA+ WV ++ S++Q F V+ E NM S + Q Q ++++ ++M
Sbjct: 93 TTALKWVVRCCPQLPRSLVQKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNL 152
Query: 165 GARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLK 224
G +I LP++ VE S++++ + N +EI+++ L Y+D AI+V+NKPP +P++
Sbjct: 153 GDQILLPIT-VEEFPSEKHE------YHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQ 205
Query: 225 GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNK 284
G + + S+D LAA L YD +E P+LVHRLDR+SSG+L+MGRT+ S ++L +F +
Sbjct: 206 GGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIF----R 261
Query: 285 SKSLSKAWND---ACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNS 341
K+ + ND + +RYWALVIGSP+ +G+I APL KV++DDGK+ERI + N
Sbjct: 262 EKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNV 321
Query: 342 GLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVH 401
+SQ A+TEYRV+ +G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYGW H
Sbjct: 322 QTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 381
Query: 402 RRWKQMPRVDIEPTSGKPYKLRR--PDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPT-- 457
R+WKQ+ + +IE + R+ P GLD++ GS+L K P LHLHC+++ N+
Sbjct: 382 RKWKQLFQSNIEKNLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQ 441
Query: 458 ---LSSKPDGPDL--LRFVASMPSHMKISWNLMSS 487
LS++ D +L L FVA +PSHM+ SW++++S
Sbjct: 442 NLQLSAECDLSELESLEFVAPLPSHMQRSWDILNS 476
>gi|255555275|ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223542055|gb|EEF43599.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 536
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 168/427 (39%), Positives = 261/427 (61%), Gaps = 39/427 (9%)
Query: 83 QLLSLPPFPGHNLPGKHWGR----------QCHVTAVSWVKYYFDEVQDSVIQSHFNKGL 132
+ +LPP+ + G G+ TA+ WV E+ +++Q F
Sbjct: 127 KFFTLPPYTS-TISGSALGKALSATATAKASTETTALKWVLRCCPELPRNLVQKLFRLRQ 185
Query: 133 VQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLN 192
V+ E N+GD +E +++ ++M G RIFLP+S+ K+ +
Sbjct: 186 VKRELLNVGDGEMEH----KTKRVAAKDLMNVGDRIFLPISVQALPFEKQ-------KCH 234
Query: 193 PNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLV 252
E +++R L Y+D AI+V+NKPP +P++G + + +S D LAA+ LSYDY+E P+LV
Sbjct: 235 CGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLV 294
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACE---AMYQRYWALVIG 309
HRLDR+SSG+L+MGRT+ S +L +F + K+ + + +D E + ++YWALVIG
Sbjct: 295 HRLDRDSSGILVMGRTQTSTMVLHSVF----REKTFAASNHDIGERRRILQRKYWALVIG 350
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
SP+ ++GII APL KV++DDGK++RI + +N+ + Q A+T+YRV+ +G +W+EL
Sbjct: 351 SPRRQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMESS-HGYAWLELS 409
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRR--PDG 427
P+T RKHQLRVHCAE LGTPIVGDYKYGW VHR+WKQ+P ++E S + ++ P G
Sbjct: 410 PITGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQLPFPNLEKISNENALCKKILPFG 469
Query: 428 LDVQKGSVLSKVPLLHLHCRELKSDNLFPTL-----SSKPDGPDL--LRFVASMPSHMKI 480
+D++ GS+ K P LHLHC+++ ++ L SS D DL + A +PS+M+
Sbjct: 470 IDLESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQR 529
Query: 481 SWNLMSS 487
SW++++S
Sbjct: 530 SWDILNS 536
>gi|224129476|ref|XP_002328726.1| predicted protein [Populus trichocarpa]
gi|222839024|gb|EEE77375.1| predicted protein [Populus trichocarpa]
Length = 177
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 140/180 (77%), Positives = 156/180 (86%), Gaps = 17/180 (9%)
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
VLLDDGKTER++LAQ+S LE S++A+TEYRVLGP INGCSWIELRPLT RKHQLRVHCAE
Sbjct: 1 VLLDDGKTERVVLAQHSSLEPSRDAVTEYRVLGPTINGCSWIELRPLTSRKHQLRVHCAE 60
Query: 385 ALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHL 444
ALGTPIVGDYKYGWFVHRRWKQMPRVDIEP+SGKPYKLR P+G+D+QKGSVL+KVPLLHL
Sbjct: 61 ALGTPIVGDYKYGWFVHRRWKQMPRVDIEPSSGKPYKLRWPEGVDIQKGSVLAKVPLLHL 120
Query: 445 HCREL--------------KSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 490
HCREL KS+N+ P LS++ PDLLRFVASMPSHMKISWNLMSS+LV
Sbjct: 121 HCRELVLPNIAKFLDVLDGKSENVHPALSTR---PDLLRFVASMPSHMKISWNLMSSFLV 177
>gi|358343831|ref|XP_003635999.1| RNA pseudourine synthase [Medicago truncatula]
gi|355501934|gb|AES83137.1| RNA pseudourine synthase [Medicago truncatula]
Length = 430
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 158/396 (39%), Positives = 234/396 (59%), Gaps = 31/396 (7%)
Query: 108 AVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGAR 167
A+ WV E+ ++I F V+M Q +++ + + G R
Sbjct: 50 ALKWVIRCCPELPKTLIHKLFRLKQVRM--------LPRQQDDNKFKRVTPKDTLNSGDR 101
Query: 168 IFLPVSMVEGRISKRYDTIPS-----GTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVP 222
IFLP S + ++ P+ L A +I+++R LV Y+D ILVLNKPP +P
Sbjct: 102 IFLPNS-----VKQQIPLTPTPPKHESPLTLTAKQINFIRSLVIYKDPHILVLNKPPGMP 156
Query: 223 LKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDV 282
++G + + S+DA+AA +L+YDY++ P+LVHRLDR+ SG+L+MGRTK S +LL +F +
Sbjct: 157 VQGGINIKLSLDAVAAQSLNYDYSQPPRLVHRLDRDCSGILVMGRTKTSTALLHSIFRE- 215
Query: 283 NKSKSLSKAWNDACEAMYQR-YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNS 341
K+ S ND + + QR YWALV+G P+ G+++APL KV++D+GK++RI + NS
Sbjct: 216 -KTSRASNEENDTEKIILQRRYWALVLGCPRRSGGVVNAPLGKVVVDNGKSDRITIVDNS 274
Query: 342 GLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVH 401
L +SQ A+TEYRV+ +G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYG H
Sbjct: 275 ALLSSQHAVTEYRVISSSSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAH 334
Query: 402 RRWKQMPRVDIEPTSGKPYKLRR-PDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSS 460
++W Q ++E ++ + K P GL++ KGS+ K P LHLHC+++ N+ L +
Sbjct: 335 KKWGQFDFSNLEDSTEEHLKEEALPFGLNLNKGSISDKHPRLHLHCKQIVLPNISQALQN 394
Query: 461 KPDGPD---------LLRFVASMPSHMKISWNLMSS 487
D L A +P +MK SW + +S
Sbjct: 395 VQSVSDSSYDLSAVESLELEADLPPYMKKSWEVTNS 430
>gi|356495831|ref|XP_003516775.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Glycine
max]
Length = 427
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 229/389 (58%), Gaps = 25/389 (6%)
Query: 106 VTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPG 165
TA+ WV + +++ F V++ A + Q + +++ + + G
Sbjct: 55 TTALKWVVRCCPHLPRALVHKLFRLRQVRIHPATVI-------QQQTFKRVAAKDTLNTG 107
Query: 166 ARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKG 225
RI LP S+ K T L P +I+++R LV Y+D AILVLNKPP +P++G
Sbjct: 108 DRILLPQSV------KVKQTPTHSHLTPQ--QINFIRTLVIYKDPAILVLNKPPGMPVQG 159
Query: 226 HLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKS 285
+ + S+DA+AAA+L+Y Y++ P+LVHRLDR+ SG+L+MGRT S ++L +F + K+
Sbjct: 160 GINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFRE--KT 217
Query: 286 KSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEA 345
S + +RYWALV+G P+ +G++ A L KV++D+G+++RI + NS L +
Sbjct: 218 SRASDDIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMS 277
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
SQ A+TEYRV+ G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYGW HR+W
Sbjct: 278 SQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWG 337
Query: 406 QMPRVDIEPTSGKPYKLRR-PDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSS--KP 462
++E + + + P GL++ KGS+ P LHLHC+++ N+ L +
Sbjct: 338 HFDLPNVEDSREELLNEEKLPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSA 397
Query: 463 DGPDL-----LRFVASMPSHMKISWNLMS 486
DL L VA +P +M+ SW++ +
Sbjct: 398 SSCDLSLVEELELVADLPPYMQRSWDVTN 426
>gi|449526979|ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/389 (40%), Positives = 233/389 (59%), Gaps = 21/389 (5%)
Query: 106 VTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPG 165
+TA+ WV E+ S++Q F V+ + + +S ++++ +++ G
Sbjct: 95 ITALKWVIRCCPELPRSLVQKLFRLRKVRRGSSMIENSEYNLEARDQLKRVAAKDILNVG 154
Query: 166 ARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKG 225
+IFLP+S+ K D N +E ++ LV ++D AILV+NKPP +P++G
Sbjct: 155 DQIFLPMSVQVFSTEKTRDYC-------NKEEETFMHSLVLHKDPAILVINKPPGLPVQG 207
Query: 226 HLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKS 285
+ V S+D LAA+ LSY Y+E P+LVHRLDR+SSG+L+MGRT S SLL +F + K+
Sbjct: 208 GIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFRE--KT 265
Query: 286 KSLSKAWN---DACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG 342
SK N + + +RYWALVIGSP+ +G+I APL K++LDDG++E+I++ N+
Sbjct: 266 FEASKHANHVDSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAE 325
Query: 343 LEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHR 402
Q+A+T+Y+V+ +G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYGW H+
Sbjct: 326 PMPFQQAITQYKVIKSH-HGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHK 384
Query: 403 RWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKP 462
WK + GK L P GLD + GS+ P LHLHC++L ++ L +
Sbjct: 385 NWKPFCS-NFHKNQGKKQFL--PFGLDFESGSIAENSPRLHLHCKQLTLPDVSFALHNDS 441
Query: 463 DGPD-----LLRFVASMPSHMKISWNLMS 486
D L A +PS+M+ SW++++
Sbjct: 442 LDRDCSRLECLELDAPLPSYMQKSWDIIN 470
>gi|357154257|ref|XP_003576723.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like
[Brachypodium distachyon]
Length = 465
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 237/400 (59%), Gaps = 41/400 (10%)
Query: 107 TAVSWVKYYFDEVQDSVIQSHF-----NKGLVQMECANMGDSFVEQGQMKPIRKIKTNEV 161
TA+ WV+ ++ S++Q F K + E ++ D+ EQ Q+K ++ +
Sbjct: 85 TAIRWVRRCCPDLPASLVQKLFRLRKVKKNALTAETSST-DASAEQFQLK---RVSAKDY 140
Query: 162 MEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKV 221
+ PG +FLPV++ E ++++ N +EID+LR L Y+D AI+V+NKPP +
Sbjct: 141 LLPGDTLFLPVNIQESSVAEKTRKFD------NRNEIDFLRSLEIYKDKAIIVINKPPGM 194
Query: 222 PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSD 281
P++G + + NS+D LA + +E P+LVHRLDR+ SG+L++GRT+ S S+L +F +
Sbjct: 195 PVQGGVGIKNSIDVLAPM-FEENSSEAPRLVHRLDRDCSGVLVLGRTQLSASILHAIFRE 253
Query: 282 VNKSKSLSKAWNDACEAMYQR-YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQN 340
+ A D + + QR Y ALVIG+P+ +G++ APL+KVLL DGK+ER+ +
Sbjct: 254 -----KTADALADGTQQVLQRKYVALVIGTPRHSKGLLSAPLAKVLLQDGKSERLTVKAG 308
Query: 341 SGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFV 400
+ Q+A+TEYRV+ G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYG
Sbjct: 309 PNTTSVQDALTEYRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQA 368
Query: 401 HRRWKQMPRVD-IEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLS 459
H+ W +P IE K K R P GL + GSV+ + P LHLHC+++ + P +S
Sbjct: 369 HQNWSPLPAPQAIEEELLK--KRRLPFGLVLGGGSVVEEQPQLHLHCKQM----VLPDIS 422
Query: 460 SKPDG----------PDL--LRFVASMPSHMKISWNLMSS 487
+ G DL L FVA +P HM++SW ++ S
Sbjct: 423 AAVQGLQSEDADRDFSDLEKLSFVAPLPQHMRLSWEVLKS 462
>gi|224105621|ref|XP_002313876.1| predicted protein [Populus trichocarpa]
gi|222850284|gb|EEE87831.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 149/343 (43%), Positives = 220/343 (64%), Gaps = 38/343 (11%)
Query: 162 MEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKV 221
M+ G RIFLP+S V+ +++ D + N +EI+++R L Y+D+AI+V+NKPP +
Sbjct: 1 MDVGDRIFLPIS-VKVLPAEKQDC------HCNEEEINFIRGLELYKDAAIIVVNKPPGM 53
Query: 222 PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSD 281
P++G + + S+D L+A+ S DY+E P+LVHRLDR+ SG+L+MGRT+ S ++L +F
Sbjct: 54 PVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATVLHAIF-- 111
Query: 282 VNKSKSLSKAWNDACEA---MYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILA 338
+ K+L+ + +D + ++YWALVIGSP+ +G+I APL KV++D+GK++RI +
Sbjct: 112 --REKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSDRITVV 169
Query: 339 QNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGW 398
+NS +SQ A+T+YRV+ +G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKY W
Sbjct: 170 ENSQNLSSQHAVTQYRVIESS-HGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYAW 228
Query: 399 FVHRRWKQMPRVDIEPTSGKPYKLRR--PDGLDVQKGSVLSKVPLLHLHCR--------- 447
HR WKQ+ +IE S + P LD+ GS+ K P LHLHC+
Sbjct: 229 QAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDLDSGSISEKHPRLHLHCKQMVLPDVSK 288
Query: 448 -----ELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
+L SD F L+S L+F A +P +MK SW+++
Sbjct: 289 ALQDVQLSSDYDFSQLAS-------LKFDAPLPPYMKKSWDIL 324
>gi|449438639|ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
sativus]
Length = 466
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 158/391 (40%), Positives = 234/391 (59%), Gaps = 28/391 (7%)
Query: 106 VTAVSWVKYYFDEVQDSVIQSHFNKGLVQMEC-ANMGDSFVEQGQMKPIRKIKTNEVMEP 164
+TA+ WV E+ S++Q F V + G+S + ++++ +++
Sbjct: 95 ITALKWVIRCCPELPRSLVQKLFRLRKVPRQLNVGCGNSHHQ------LKRVAAKDILNV 148
Query: 165 GARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLK 224
G +IFLP+S+ K D N +E ++ LV ++D AILV+NKPP +P++
Sbjct: 149 GDQIFLPMSVQVFSTEKTRDYC-------NKEEETFMHSLVLHKDPAILVINKPPGLPVQ 201
Query: 225 GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNK 284
G + V S+D LAA+ LSY Y+E P+LVHRLDR+SSG+L+MGRT S SLL +F + K
Sbjct: 202 GGIGVKRSLDELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFRE--K 259
Query: 285 SKSLSKAWNDA---CEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNS 341
+ SK N + + +RYWALVIGSP+ +G+I APL K++LDDG++E+I++ N+
Sbjct: 260 TFEASKHANHVDSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNA 319
Query: 342 GLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVH 401
Q+A+T+Y+V+ +G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYGW H
Sbjct: 320 EPMPFQQAITQYKVIKSH-HGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAH 378
Query: 402 RRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK 461
+ WK + GK L P GLD + GS+ P LHLHC++L ++ L +
Sbjct: 379 KNWKPFCS-NFHKNQGKKQFL--PFGLDFESGSIAENNPRLHLHCKQLTLPDVSFALHND 435
Query: 462 PDGPD-----LLRFVASMPSHMKISWNLMSS 487
D L A +PS+M+ SW++++S
Sbjct: 436 SLDRDCSRLECLELDAPLPSYMQKSWDIINS 466
>gi|222641041|gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japonica Group]
Length = 465
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 156/401 (38%), Positives = 240/401 (59%), Gaps = 43/401 (10%)
Query: 107 TAVSWVKYYFDEVQDSVIQSHF-----NKGLVQMECANMGDSFVEQGQMKPIRKIKTNEV 161
TA+ WV+ ++ S++Q F K +V E ++ D+ EQ ++ R++ +
Sbjct: 85 TAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISS-ADASAEQHRL---RRVSAKDQ 140
Query: 162 MEPGARIFLPVSMVEGRI---SKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKP 218
+ PG +FLPV++ E + +K++D N +EI++LR L Y+D AI+V+NKP
Sbjct: 141 LMPGDILFLPVNLKESSVAEKTKKFD---------NRNEINFLRGLEIYKDEAIIVVNKP 191
Query: 219 PKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWL 278
P +P++G + + NS+D LA+ + +E P+LVHRLDR+ SG+L++GR + S S+L +
Sbjct: 192 PGMPVQGGVGIKNSIDVLASM-FEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAI 250
Query: 279 FSDVNKSKSLSKAWNDACEAMYQR-YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIIL 337
F + + A D + + QR Y ALVIG+P+ +G++ APL+K+LL DGK+ER+ +
Sbjct: 251 FRE-----KTADALADGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTI 305
Query: 338 AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+S + Q+A+TEYRV+ G +W+EL P T RKHQLRVHCAE LGTPIVGDYKYG
Sbjct: 306 RASSNAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYG 365
Query: 398 WFVHRRWKQMPRVDIEPTSGKPYKLRR---PDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
H++W +P P + LR+ P GL V GS+ + P LHLHC+++ ++
Sbjct: 366 RQAHQKWMPLPL----PRTIDEELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMVLPDV 421
Query: 455 FPTL------SSKPDGPDL--LRFVASMPSHMKISWNLMSS 487
L PD DL L FVA +P HM++SW ++ S
Sbjct: 422 SVALHRLQSSDVNPDFSDLEKLNFVAPLPLHMRLSWEILKS 462
>gi|356554056|ref|XP_003545365.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 3,
mitochondrial-like [Glycine max]
Length = 228
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 141/223 (63%), Positives = 159/223 (71%), Gaps = 43/223 (19%)
Query: 305 ALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCS 364
ALVIG+PKEK+GIIHAPLSKVLL+DGKT R+ILA +S +E Q A+TE+RVLGP INGCS
Sbjct: 12 ALVIGTPKEKEGIIHAPLSKVLLNDGKTXRMILAHHSSVEPCQGAVTEHRVLGPKINGCS 71
Query: 365 WIELRPLT-------------------------CRKHQ-LRVHCAEALGTPIVGDYKYGW 398
W+EL PLT C+ LRVHCAEALGTPIVGDYKYGW
Sbjct: 72 WVELCPLTGSIRLSLEYVVESPTGGGSGLSFCSCKARTLLRVHCAEALGTPIVGDYKYGW 131
Query: 399 FVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTL 458
FVH RWKQMPRVDIEPT+GK P+GLDVQKGSVLSKVPLLHLHCREL N+ L
Sbjct: 132 FVHSRWKQMPRVDIEPTTGK------PEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFL 185
Query: 459 -----------SSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 490
+S + PD+LRFVA+MPSHM+ISWNLMSSYLV
Sbjct: 186 HVLNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLMSSYLV 228
>gi|218201639|gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indica Group]
Length = 465
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 156/401 (38%), Positives = 240/401 (59%), Gaps = 43/401 (10%)
Query: 107 TAVSWVKYYFDEVQDSVIQSHF-----NKGLVQMECANMGDSFVEQGQMKPIRKIKTNEV 161
TA+ WV+ ++ S++Q F K +V E ++ D+ EQ ++ R++ +
Sbjct: 85 TAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISS-ADASAEQHRL---RRVSAKDQ 140
Query: 162 MEPGARIFLPVSMVEGRI---SKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKP 218
+ PG +FLPV++ E + +K++D N +EI++LR L Y+D AI+V+NKP
Sbjct: 141 LMPGDILFLPVNLKESSVAEKTKKFD---------NRNEINFLRGLEIYKDEAIIVVNKP 191
Query: 219 PKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWL 278
P +P++G + + NS+D LA+ + +E P+LVHRLDR+ SG+L++GR + S S+L +
Sbjct: 192 PGMPVQGGVGIKNSIDVLASM-FEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAI 250
Query: 279 FSDVNKSKSLSKAWNDACEAMYQR-YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIIL 337
F + + A D + + QR Y ALVIG+P+ +G++ APL+K+LL DGK+ER+ +
Sbjct: 251 FRE-----KTADALADGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTV 305
Query: 338 AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+S + Q+A+TEYRV+ G +W+EL P T RKHQLRVHCAE LGTPIVGDYKYG
Sbjct: 306 RASSNAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYG 365
Query: 398 WFVHRRWKQMPRVDIEPTSGKPYKLRR---PDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
H++W +P P + LR+ P GL V GS+ + P LHLHC+++ ++
Sbjct: 366 RQAHQKWMPLPL----PRTIDEELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMVLPDV 421
Query: 455 FPTL------SSKPDGPDL--LRFVASMPSHMKISWNLMSS 487
L PD DL L FVA +P HM++SW ++ S
Sbjct: 422 SVALHRLQSSDVNPDFSDLEKLNFVAPLPLHMRLSWEILKS 462
>gi|326504872|dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 472
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/398 (38%), Positives = 232/398 (58%), Gaps = 37/398 (9%)
Query: 107 TAVSWVKYYFDEVQDSVIQSHFNKGLVQMEC--ANMGDSFVEQGQMKPIRKIKTNEVMEP 164
TA+ WV+ ++ S++Q F V+ A + Q + +R++ + + P
Sbjct: 92 TAIRWVRRCCPDLPASLVQKLFRLRKVKKNAVTAETSSTHASAEQFR-LRRVSAKDHLLP 150
Query: 165 GARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLK 224
G +FLPV++ E ++++ N +EID+LR L Y+D AI+V+NKPP +P++
Sbjct: 151 GDTLFLPVNIQESSVAEKARKFD------NRNEIDFLRSLEIYKDKAIIVVNKPPGMPVQ 204
Query: 225 GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNK 284
G + + NS+D LA + ++ P+LVHRLDR+ SG+L++GRT+ S S+L +F +
Sbjct: 205 GGVGIKNSIDVLAPM-FEENSSDAPRLVHRLDRDCSGVLVLGRTQLSASILHAIFRE--- 260
Query: 285 SKSLSKAWNDACEAMYQR-YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGL 343
+ A D + + QR Y ALV+G+P+ +G++ APL+KVLL DGK+ER+ +
Sbjct: 261 --KTADALADGTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERLTVRAGPNT 318
Query: 344 EASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 403
+ Q+A+TEYRV+ G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYG H+
Sbjct: 319 TSVQDALTEYRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQD 378
Query: 404 WKQMPRVDIEPTSGKPY--KLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK 461
W +P + T K K R P GL + GS+ + P LHLHC+++ + P +S+
Sbjct: 379 WTPLP---VSQTVDKELLRKQRLPFGLVLGGGSIAEQQPQLHLHCKQM----MLPDISAA 431
Query: 462 PDG----------PDL--LRFVASMPSHMKISWNLMSS 487
G DL L FVA +P HM++SW ++ S
Sbjct: 432 VQGLQSEDADRDFSDLEKLSFVAPLPLHMRLSWEVLKS 469
>gi|297830600|ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329022|gb|EFH59441.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 150/394 (38%), Positives = 231/394 (58%), Gaps = 26/394 (6%)
Query: 106 VTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPG 165
TA+ W+ ++ +++Q F V+ + + D + Q ++++ E + G
Sbjct: 90 TTALRWILRCRPDLPRTLVQKLFRLRQVRRQMSLSVDG--HELQRSQLKRVAAKESLNVG 147
Query: 166 ARIFLPVSMVEGRISKRYDTIPS-----GTLNPNADEIDYLRRLVKYRDSAILVLNKPPK 220
RI+LP+S+ DT P+ + + +E ++ LV Y+D AI+VLNKP
Sbjct: 148 DRIYLPLSVDN-------DTPPTPPAKKESFQCSEEERKFVCSLVLYKDPAIIVLNKPHG 200
Query: 221 VPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFS 280
+ ++G + S+D LAA L++D +E P+LVHRLDR+ SGLL++ RT+ + ++L +F
Sbjct: 201 LAVQGGSGIKTSIDELAATCLTFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFR 260
Query: 281 DVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQN 340
+ S + +++ ++Y ALVIG P+ ++G I APL KV++DDGK++RI + N
Sbjct: 261 EKTCGAS-AYGVKKNIKSLKRKYMALVIGCPRRQKGQISAPLRKVVVDDGKSDRITVNDN 319
Query: 341 SGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFV 400
L ++Q A+TEY+V+ +G +W+ELRPLT RKHQLRVHCAE LGTPI+GDYKYGW
Sbjct: 320 GELVSTQHAITEYKVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQA 379
Query: 401 HRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLS- 459
H+ + P V E T KP P GLD+ G V SK P LHLH +++ N+ L
Sbjct: 380 HK--AREPFVSSETTPTKPSS--SPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEK 435
Query: 460 ------SKPDGPDLLRFVASMPSHMKISWNLMSS 487
S D L+F A +PSHM++S+NL+ S
Sbjct: 436 MQVSSDSDISDLDSLKFDAPLPSHMQLSFNLLKS 469
>gi|15230381|ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA pseudourine synthase 4, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 4; AltName:
Full=RNA-uridine isomerase 4; Flags: Precursor
gi|11994467|dbj|BAB02469.1| unnamed protein product [Arabidopsis thaliana]
gi|110737723|dbj|BAF00800.1| hypothetical protein [Arabidopsis thaliana]
gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis thaliana]
gi|332642719|gb|AEE76240.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
Length = 477
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 155/426 (36%), Positives = 238/426 (55%), Gaps = 35/426 (8%)
Query: 85 LSLPPFPGHNLPGKHWGR--------------QCHVTAVSWVKYYFDEVQDSVIQSHFNK 130
L+LPPF + G G+ TA+ W+ ++ +++Q F
Sbjct: 56 LTLPPF-SPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFRL 114
Query: 131 GLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGT 190
V+ E + D ++ Q ++++ E + G RI+LP+S+ + + +
Sbjct: 115 RQVRREMSMSVDG--DELQRSQLKRVAAKESLNVGDRIYLPLSVDND--TPQTPPAKKES 170
Query: 191 LNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
+ +E ++ LV Y+D AI+VLNKP + ++G + S+D LAA+ L +D +E P+
Sbjct: 171 FQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPR 230
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR+ SGLL++ RT+ + ++L +F + S + +++ ++Y ALVIG
Sbjct: 231 LVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGAS-AYGVKKNVKSLKRKYMALVIGC 289
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
P ++G I APL KV++DDGK+ERI + N L ++Q A+TEYRV+ +G +W+ELRP
Sbjct: 290 PPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRP 349
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPT--SGKPYKLRRPDGL 428
LT RKHQLRVHCAE LGTPIVGDYKYGW H+ + + PT S P+ GL
Sbjct: 350 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSPF------GL 403
Query: 429 DVQKGSVLSKVPLLHLHCRELKSDNLFPTLS-------SKPDGPDLLRFVASMPSHMKIS 481
D+ G V SK P LHLH +++ N+ L S D L+F A +PSHM++S
Sbjct: 404 DLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLS 463
Query: 482 WNLMSS 487
+NL+ S
Sbjct: 464 FNLLKS 469
>gi|226501200|ref|NP_001151637.1| LOC100285271 [Zea mays]
gi|195648278|gb|ACG43607.1| RNA binding protein [Zea mays]
Length = 439
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 218/367 (59%), Gaps = 29/367 (7%)
Query: 101 GRQCHVTAVSWVKYYFDEVQDSVIQSHF-----NKGLVQMECANMGDSFVEQGQMKPIRK 155
G + TA+ WV++ V S++Q F K LV + ++ DS Q ++ R+
Sbjct: 76 GACSNATAIRWVRHCCPHVPASLVQKLFRLRKVKKNLVTADTSST-DSITLQLRL---RR 131
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+ + + PG +FLPV++ E ++++ N +EID+LR L Y+D AI+VL
Sbjct: 132 VSAKDELVPGDILFLPVNIQESSVTEKTKKFG------NKNEIDFLRDLEIYKDRAIIVL 185
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLL 275
NKPP +P++G + + NS+D LA +E P+LVHRLDR+ SG+L++GRT+ S SL+
Sbjct: 186 NKPPGMPVQGGVGIKNSIDILAPM-FENGSSEVPRLVHRLDRDCSGVLVLGRTQFSASLM 244
Query: 276 TWLFSDVNKSKSLSKAWNDACEAMYQR-YWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
+F + + A D + + QR Y ALVIG P+ +G++ APL+KV+L DG++ER
Sbjct: 245 HAIFRE-----KTADALGDGTQQVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSER 299
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ + S + Q+A+TEYRV+ G +W+EL P T RKHQLRVHCAE LGTPIVGDY
Sbjct: 300 LTVCAGSNTASVQDALTEYRVIESFPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDY 359
Query: 395 KYGWFVHRRWKQMPR-VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KYG H+ W +P I+ K KL P GL + GSV + P LHLHC+++
Sbjct: 360 KYGRQAHQNWMPLPMPQTIDKEMLKKRKL--PFGLTLGGGSVAEQQPQLHLHCKQM---- 413
Query: 454 LFPTLSS 460
+ P +S+
Sbjct: 414 ILPDISA 420
>gi|302806002|ref|XP_002984751.1| hypothetical protein SELMODRAFT_121195 [Selaginella moellendorffii]
gi|300147337|gb|EFJ14001.1| hypothetical protein SELMODRAFT_121195 [Selaginella moellendorffii]
Length = 355
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 190/298 (63%), Gaps = 18/298 (6%)
Query: 192 NPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL 251
+P +EI+ L+ V Y+D ++VLNKPP +P++G V S+ ++ + AL ++Y E P+L
Sbjct: 27 DPTEEEIEQLKDAVLYKDEDLIVLNKPPGLPVQGGSKVERSLVSMMSLALQFEYKEPPRL 86
Query: 252 VHRLDRESSGLLLMGRTKES-VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
VHRLD++ SG++++GRT ES V + ++L S N S+ + + ++Y ALVIGS
Sbjct: 87 VHRLDKDVSGVMILGRTYESTVKIQSFLCSKDNLMPSVITTQGSVGKGLDRKYIALVIGS 146
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
P +G I APL K++L+DGK++R+++A + E + A+TEY+VL + GC+W++LRP
Sbjct: 147 PTADKGFISAPLLKMVLEDGKSDRVLIAADPKSENAIPAITEYQVLKRSVLGCTWLQLRP 206
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDV 430
LT RKHQLRVHCA+ LG PIVGD KYG+ H++W M ++ + K R +
Sbjct: 207 LTGRKHQLRVHCAQGLGLPIVGDMKYGFNTHKKW--MAERNMNTVDPQDIKAR-----NK 259
Query: 431 QKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDG------PDLLRFVASMPSHMKISW 482
GSV+SK PLLHLH REL P L KP P+ +RFVA +P+HM+ SW
Sbjct: 260 MAGSVVSKNPLLHLHSRELT----IPRLRKKPGAVDFGLDPERMRFVAPLPTHMESSW 313
>gi|302808237|ref|XP_002985813.1| hypothetical protein SELMODRAFT_123269 [Selaginella moellendorffii]
gi|300146320|gb|EFJ12990.1| hypothetical protein SELMODRAFT_123269 [Selaginella moellendorffii]
Length = 355
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 190/298 (63%), Gaps = 18/298 (6%)
Query: 192 NPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL 251
+P +EI+ L+ V Y+D ++VLNKPP +P++G V S+ ++ + AL ++Y E P+L
Sbjct: 27 DPTEEEIEQLKDAVLYKDEDLIVLNKPPGLPVQGGSKVERSLVSMMSLALQFEYKEPPRL 86
Query: 252 VHRLDRESSGLLLMGRTKES-VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
VHRLD++ SG++++GRT ES V + ++L S N S+ + + ++Y ALVIGS
Sbjct: 87 VHRLDKDVSGVMILGRTYESTVKIQSFLCSKDNLMPSVITIQGSVGKGLDRKYIALVIGS 146
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
P +G I APL K++L+DGK++R+++A + E + A+TEY+VL + GC+W++LRP
Sbjct: 147 PTADKGFISAPLLKMVLEDGKSDRVLIAADPKSENAIPAITEYQVLKRSVLGCTWLQLRP 206
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDV 430
LT RKHQLRVHCA+ LG PIVGD KYG+ H++W M ++ + K R +
Sbjct: 207 LTGRKHQLRVHCAQGLGLPIVGDMKYGFNTHKKW--MAERNMNTVDPQDIKAR-----NK 259
Query: 431 QKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDG------PDLLRFVASMPSHMKISW 482
GSV+SK PLLHLH REL P L KP P+ +RFVA +P+HM+ SW
Sbjct: 260 MAGSVVSKNPLLHLHSRELT----IPRLRKKPGAVDFGLDPERMRFVAPLPTHMESSW 313
>gi|168014236|ref|XP_001759658.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689197|gb|EDQ75570.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 283
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 129/293 (44%), Positives = 174/293 (59%), Gaps = 35/293 (11%)
Query: 208 RDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGR 267
+D+ I+V+NKP + ++G V S+D++ AALSY+YNEGP+LVHRLD+E+SG L++GR
Sbjct: 1 QDAEIIVINKPSGLAVQGGSDVVKSLDSMMEAALSYNYNEGPRLVHRLDKETSGALVLGR 60
Query: 268 TKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLL 327
T +S L L NK++ +S+A Y ALVIG P++K+G I APL+KV+
Sbjct: 61 THQSTVFLQALLR--NKTEKISQAPGRC-------YLALVIGVPEKKEGRISAPLAKVVS 111
Query: 328 DDGKTERIILAQNSGLEASQEAMTEYRVLGP-MINGCSWIELRPLTCRKHQLRVHCAEAL 386
D GK +++ + S A QEA+T+Y+VLG + GCSW+ELRPLT RKHQ+RVHCAE L
Sbjct: 112 DSGKLDKMRVVHGSHPNA-QEAITDYKVLGSSLFAGCSWLELRPLTGRKHQIRVHCAEVL 170
Query: 387 GTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHC 446
G PIVGDYKYGW R W R E T LR + G V S P LHLHC
Sbjct: 171 GMPIVGDYKYGWRALRLWPPTDRT--EDTKSSVLGLR-------ESGHVWSSKPYLHLHC 221
Query: 447 RELKSDNLFPTL-------SSKPDGPDL--------LRFVASMPSHMKISWNL 484
R+L ++ SS G + L +A +P HM +SWN+
Sbjct: 222 RQLILPDVAQAFKSQSRERSSAQTGARVSGSQFAEPLEIIAPLPPHMVVSWNM 274
>gi|238013094|gb|ACR37582.1| unknown [Zea mays]
Length = 272
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/277 (42%), Positives = 169/277 (61%), Gaps = 18/277 (6%)
Query: 221 VPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFS 280
+P++G + + NS+D LA +E P+LVHRLDR+ SG+L++GRT+ S SL+ +F
Sbjct: 1 MPVQGGVGIKNSIDILAPM-FENGSSEVPRLVHRLDRDCSGVLVLGRTQFSASLMHAIFR 59
Query: 281 DVNKSKSLSKAWNDACEAMYQR-YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQ 339
+ + A D + + QR Y ALVIG P+ +G++ APL+KV+L DG++ER+ +
Sbjct: 60 E-----KTADALGDGTQQVLQRKYVALVIGRPRHPKGLLSAPLAKVVLQDGRSERLTVCA 114
Query: 340 NSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWF 399
S + Q+A+TEYRV+ G +W+EL P T RKHQLRVHCAE LGTPIVGDYKYG
Sbjct: 115 GSNTASVQDALTEYRVIESFPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQ 174
Query: 400 VHRRWKQMPR-VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTL 458
H+ W +P I+ K KL P GL + GSV + P LHLHC+++ ++ +
Sbjct: 175 AHQNWMPLPMPQTIDKEMLKKRKL--PFGLTLGGGSVAEQQPQLHLHCKQMILPDISAAM 232
Query: 459 ------SSKPDGPDL--LRFVASMPSHMKISWNLMSS 487
+ D DL L FVA +P HM++SW ++ S
Sbjct: 233 QQLRSSDADHDFSDLEKLSFVAPLPLHMQLSWKILLS 269
>gi|115477922|ref|NP_001062556.1| Os09g0103500 [Oryza sativa Japonica Group]
gi|75117672|sp|Q69K07.1|PUS4_ORYSJ RecName: Full=RNA pseudourine synthase 4, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 4; AltName:
Full=RNA-uridine isomerase 4; Flags: Precursor
gi|50725212|dbj|BAD34146.1| ribosomal large subunit pseudouridine synthase C-like [Oryza sativa
Japonica Group]
gi|51091882|dbj|BAD36694.1| ribosomal large subunit pseudouridine synthase C-like [Oryza sativa
Japonica Group]
gi|113630789|dbj|BAF24470.1| Os09g0103500 [Oryza sativa Japonica Group]
Length = 448
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 171/281 (60%), Gaps = 28/281 (9%)
Query: 106 VTAVSWVKYYFDEVQDSVIQSHF-----NKGLVQMECANMGDSFVEQGQMKPIRKIKTNE 160
TA+ WV+ ++ S++Q F K +V E ++ D+ EQ ++ R++ +
Sbjct: 84 ATAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISS-ADASAEQHRL---RRVSAKD 139
Query: 161 VMEPGARIFLPVSMVEGRI---SKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNK 217
+ PG +FLPV++ E + +K++D N +EI++LR L Y+D AI+V+NK
Sbjct: 140 QLMPGDILFLPVNLKESSVAEKTKKFD---------NRNEINFLRGLEIYKDEAIIVVNK 190
Query: 218 PPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTW 277
PP +P++G + + NS+D LA+ + +E P+LVHRLDR+ SG+L++GR + S S+L
Sbjct: 191 PPGMPVQGGVGIKNSIDVLASM-FEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHA 249
Query: 278 LFSDVNKSKSLSKAWNDACEAMYQR-YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERII 336
+F + + A D + + QR Y ALVIG+P+ +G++ APL+K+LL DGK+ER+
Sbjct: 250 IFRE-----KTADALADGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLT 304
Query: 337 LAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ +S + Q+A+TEYRV+ G +W+EL P T RKHQ
Sbjct: 305 IRASSNAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQ 345
>gi|414884642|tpg|DAA60656.1| TPA: hypothetical protein ZEAMMB73_133926 [Zea mays]
Length = 503
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 211/443 (47%), Gaps = 78/443 (17%)
Query: 101 GRQCHVTAVSWVKYYFDEVQDSVIQSHF-----NKGLVQMECANMGDSFVEQGQMKPIRK 155
G + TA+ WV++ V S++Q F K LV + ++ DS Q ++ R+
Sbjct: 80 GACSNATAIRWVRHCCPHVPASLVQKLFRLRKVKKNLVTADTSST-DSITLQLRL---RR 135
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+ + + PG +FLPV++ E ++++ N +EID+LR L Y+D AI+VL
Sbjct: 136 VSAKDELVPGDILFLPVNIQESSVTEKTKKFG------NKNEIDFLRDLEIYKDRAIIVL 189
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG-------------- 261
NKPP +P++ H + L + + L+H + RE +
Sbjct: 190 NKPPGMPVQVHRLDRDCSGVLVLGRTQFSAS----LMHAIFREKTADALGDGTQQVLQRK 245
Query: 262 --LLLMGRTKESVSLLT-----------------WLFSDVNKSKSLSKAWNDACEAMYQR 302
L++GR + LL+ L +++ KS +D
Sbjct: 246 YVALVIGRPRHPKGLLSAPLAKNQGNMFDLPLGYGLHTNLYKSSVAPIHCSDEERHQIDE 305
Query: 303 YWALVIGS-----PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG 357
A I P+++Q +V+L DG++ER+ + S + Q+A+TEYRV+
Sbjct: 306 VLACHIKERWHRRPRQRQ--TSRCWEEVVLQDGRSERLTVCAGSNTASVQDALTEYRVIE 363
Query: 358 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR-VDIEPTS 416
G +W+EL P T RKHQLRVHCAE LGTPIVGDYKYG H+ W +P I+
Sbjct: 364 SFPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWMPLPMPQTIDKEM 423
Query: 417 GKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLS----------SKPDGPD 466
K KL P GL + GSV + P LHLHC+++ + P +S + D D
Sbjct: 424 LKKRKL--PFGLTLGGGSVAEQQPQLHLHCKQM----ILPDISAAMQQLRSSDADHDFSD 477
Query: 467 L--LRFVASMPSHMKISWNLMSS 487
L L FVA +P HM++SW ++ S
Sbjct: 478 LEKLSFVAPLPLHMQLSWKILLS 500
>gi|414884643|tpg|DAA60657.1| TPA: hypothetical protein ZEAMMB73_133926 [Zea mays]
Length = 549
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 139/489 (28%), Positives = 213/489 (43%), Gaps = 124/489 (25%)
Query: 101 GRQCHVTAVSWVKYYFDEVQDSVIQSHF-----NKGLVQMECANMGDSFVEQGQMKPIRK 155
G + TA+ WV++ V S++Q F K LV + ++ DS Q ++ R+
Sbjct: 80 GACSNATAIRWVRHCCPHVPASLVQKLFRLRKVKKNLVTADTSST-DSITLQLRL---RR 135
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+ + + PG +FLPV++ E ++++ N +EID+LR L Y+D AI+VL
Sbjct: 136 VSAKDELVPGDILFLPVNIQESSVTEKTKKFG------NKNEIDFLRDLEIYKDRAIIVL 189
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG-------------- 261
NKPP +P++ H + L + + L+H + RE +
Sbjct: 190 NKPPGMPVQVHRLDRDCSGVLVLGRTQFSAS----LMHAIFREKTADALGDGTQQVLQRK 245
Query: 262 --LLLMGRTKESVSLLT-----------------WLFSDVNKSKSLSKAWNDACEAMYQR 302
L++GR + LL+ L +++ KS +D
Sbjct: 246 YVALVIGRPRHPKGLLSAPLAKNQGNMFDLPLGYGLHTNLYKSSVAPIHCSDEERHQIDE 305
Query: 303 YWALVIGS-----PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG 357
A I P+++Q +V+L DG++ER+ + S + Q+A+TEYRV+
Sbjct: 306 VLACHIKERWHRRPRQRQ--TSRCWEEVVLQDGRSERLTVCAGSNTASVQDALTEYRVIE 363
Query: 358 P----------------------------------------------MINGCSWIELRPL 371
MI G +W+EL P
Sbjct: 364 SFPQDIKSDVDRNKFVQVMGVGIGSVSSKICGAVKLLLVKSTTICLLMILGYTWLELFPR 423
Query: 372 TCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR-VDIEPTSGKPYKLRRPDGLDV 430
T RKHQLRVHCAE LGTPIVGDYKYG H+ W +P I+ K KL P GL +
Sbjct: 424 TGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWMPLPMPQTIDKEMLKKRKL--PFGLTL 481
Query: 431 QKGSVLSKVPLLHLHCRELKSDNLFPTLS----------SKPDGPDL--LRFVASMPSHM 478
GSV + P LHLHC+++ + P +S + D DL L FVA +P HM
Sbjct: 482 GGGSVAEQQPQLHLHCKQM----ILPDISAAMQQLRSSDADHDFSDLEKLSFVAPLPLHM 537
Query: 479 KISWNLMSS 487
++SW ++ S
Sbjct: 538 QLSWKILLS 546
>gi|300023017|ref|YP_003755628.1| pseudouridine synthase [Hyphomicrobium denitrificans ATCC 51888]
gi|299524838|gb|ADJ23307.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
ATCC 51888]
Length = 327
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 165/376 (43%), Gaps = 76/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W + +F EV + +Q G V++ ++ + N+ + GA I +
Sbjct: 20 WFRVHFPEVGYTYLQKLLRSGQVRVNS----------------KRAQANDRLSAGAEIRV 63
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P + E K+ L + + D + +++ + D +LVLNKP + ++G
Sbjct: 64 PAIVRE---PKKLSPTGRPALGVSKGDRDAIEKMILFEDDHVLVLNKPFGLAVQGGTGTK 120
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + E P+LVHRLDR+++G+LL+ +T+E+ + L F + +K+
Sbjct: 121 KHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLGRTFQTRSAAKT--- 177
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G PK QG + A L K DG +R+ A+ +A+ A
Sbjct: 178 ------------YWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKARPGEQDAAMHAT 223
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
T Y V+ + +W+ L+P+T R+HQLR H +G PIVGD KY VH MP
Sbjct: 224 THYSVVDRAAHKAAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH-----MPAE 277
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
+IE LHLH R L + P P G +
Sbjct: 278 NIEKK--------------------------LHLHARRL----VIP----HPKGGKTIDV 303
Query: 471 VASMPSHMKISWNLMS 486
A +P+HM SW+L+
Sbjct: 304 TAPLPAHMLASWDLLG 319
>gi|418056160|ref|ZP_12694213.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
1NES1]
gi|353209379|gb|EHB74782.1| pseudouridine synthase, RluA family [Hyphomicrobium denitrificans
1NES1]
Length = 312
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 166/376 (44%), Gaps = 76/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W + +F +V + +Q G V+++ ++ + N+ + G+ I +
Sbjct: 6 WFRAHFPDVGYTYLQKLLRSGQVRVDS----------------KRAQANDRLSAGSEIRV 49
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P + R K+ L + + D + +++ Y D +LVLNKP + ++G
Sbjct: 50 PAII---RQPKKVSPNGRPALGVSKGDRDAIEKMILYEDDHVLVLNKPFGLAVQGGTGTK 106
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + E P+LVHRLDR+++G+LL+ +T+E+ + L +F + +K+
Sbjct: 107 KHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLGRIFQTRSAAKT--- 163
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G PK QG + A L K DG +R+ A+ + + A
Sbjct: 164 ------------YWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKAKPGEQDVAMHAT 209
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
T Y V+ + +W+ L+P+T R+HQLR H +G PIVGD KY VH MP
Sbjct: 210 THYSVIDRAAHKAAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH-----MPAE 263
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
+IE LHLH R L + P P G ++
Sbjct: 264 NIEKK--------------------------LHLHARRL----VIP----HPKGGKIIDV 289
Query: 471 VASMPSHMKISWNLMS 486
A +P+HM SW L+
Sbjct: 290 TAPLPAHMAASWELLG 305
>gi|328865280|gb|EGG13666.1| putative ribosomal large subunit pseudouridine synthase C protein
[Dictyostelium fasciculatum]
Length = 720
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/410 (26%), Positives = 193/410 (47%), Gaps = 80/410 (19%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQG----QMKPIRKIKTNEVMEPGA 166
W++ F + S+I L++ E D F + G R ++ ++ E G+
Sbjct: 343 WLRIQFPVMTHSLICK-----LLRKEVITATDEFHQNGLDDVAASDKRVLEQSDRTEAGS 397
Query: 167 RIFLPVSMV-EGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKG 225
I++P E R++ R P + + EI +R + Y+D +LV+NKPP + ++G
Sbjct: 398 WIYIPAKYAKEQRVADRES--PEKYIRLSDAEIAAIRNSILYKDDDLLVINKPPGLSVQG 455
Query: 226 HLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKS 285
+ +D + + L ++ +E P+LVHRLD+++SG+L++GR + + + + F K
Sbjct: 456 GTGLKKHLDMMLSH-LKFEADETPRLVHRLDKDTSGILILGRNRTATTAMADKFEQKLKR 514
Query: 286 KS------------------------LSKAWNDACEAM------YQRYWALVIGSPKEKQ 315
+S K E M + YWAL+ +P ++
Sbjct: 515 RSDREVKKEKKDKKDDSNNNNNNNYSSKKTTKTTVEEMKDDNSIIKTYWALLTSTPNPRE 574
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G I APL K++ ++G+ E+++ + +G ++ A+TEYRV+ + S++ L P T R
Sbjct: 575 GRIRAPLQKIV-ENGQ-EKVVATKETG-NGAKLAITEYRVIENSMADTSFVALWPETGRT 631
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVHCA LG+PI+GD KYG S P++ +V
Sbjct: 632 HQLRVHCASILGSPIIGDVKYGG---------------KKSTAPFE------------NV 664
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
K LHLH R ++ P ++K L+ +A +P ++ SW+++
Sbjct: 665 FDKNIPLHLHARRVQF--YHPINTNK-----LVDVIAPLPPTLQDSWSIL 707
>gi|281204012|gb|EFA78208.1| Probable ribosomal large subunit pseudouridine synthase C protein
[Polysphondylium pallidum PN500]
Length = 702
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 176/363 (48%), Gaps = 73/363 (20%)
Query: 154 RKIKTNEVMEPGARIFLPV-SMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAI 212
++++ N+ + G + +P+ ++ E R++ R + P+ + +EI +R V Y+D +
Sbjct: 374 KQVELNDRLVTGQWVNVPMKALKEQRLADRKE--PTKYARLSDEEIKEIRDSVLYKDDQL 431
Query: 213 LVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESV 272
L++NKP + ++G + +D + + L ++ E P+L HRLDRE+SG+L++ RT+++
Sbjct: 432 LIINKPQGLSVQGGTGLKKHLDMMMSH-LKFELEEAPRLCHRLDRETSGILILARTRKAA 490
Query: 273 SLLTWLFSDVNKSKSLS-------------------------KAWNDACE-----AMYQR 302
+ + F K ++ ++ + E + +
Sbjct: 491 TAMADKFEMKLKRRTTRQDRDKKDKQKKDGSGSGSSSKKDKDRSGGEDEELRDDNGIRKT 550
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
YWAL+ +P K+G I APL KV+ D E +++A + ++ A+TEY+V+ +
Sbjct: 551 YWALLTSTPNPKEGRIRAPLKKVVQD---GEEMVIATKETGDGAKLAITEYKVVESSLTN 607
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKL 422
S++ L P T R HQLRVHCA L +PIVGD KYG
Sbjct: 608 ASFVSLWPETGRTHQLRVHCASILSSPIVGDKKYG------------------------- 642
Query: 423 RRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISW 482
+ D + Q SVL K LHLH R ++ P + K D VA +P +++ SW
Sbjct: 643 -KNDSVAFQ--SVLGKKIPLHLHARRVEF--FHPETNKKID------VVAPLPKNLENSW 691
Query: 483 NLM 485
+++
Sbjct: 692 DML 694
>gi|87200850|ref|YP_498107.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
aromaticivorans DSM 12444]
gi|87136531|gb|ABD27273.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
aromaticivorans DSM 12444]
Length = 436
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 98/289 (33%), Positives = 138/289 (47%), Gaps = 68/289 (23%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG---PKLV 252
++I +V +D A +VLNKPP + +G H +D L L NEG P+LV
Sbjct: 95 EQIQLAESMVLEKDRAAIVLNKPPGLATQGGSGTHEHVDGL----LDAYVNEGEARPRLV 150
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK 312
HRLD+++SG+LL+ RT S + + FS C + + YWALV+G P
Sbjct: 151 HRLDKDTSGVLLIARTPGSAAFFSKRFS---------------CRSARKIYWALVVGVPD 195
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
K G+I PL+K G ++ SG Q A + YRV+ N +W+EL+PLT
Sbjct: 196 VKDGLIELPLAK---QPGTGGEKMMVDESG--QGQSARSRYRVISRAGNAAAWVELQPLT 250
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
R HQLRVH A A+G PIVGD KYG G+ L
Sbjct: 251 GRTHQLRVHMA-AIGHPIVGDGKYG-------------------GQAAFL---------T 281
Query: 433 GSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
GS+ K +HLH R L+ ++ P+G D++ A +P+H S
Sbjct: 282 GSISRK---MHLHARRLRIEH--------PEG-DMIDVTAPLPAHFAAS 318
>gi|365855074|ref|ZP_09395131.1| pseudouridine synthase, RluA family [Acetobacteraceae bacterium
AT-5844]
gi|363719513|gb|EHM02820.1| pseudouridine synthase, RluA family [Acetobacteraceae bacterium
AT-5844]
Length = 326
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 144/292 (49%), Gaps = 51/292 (17%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W + YF ++ +Q G ++++ ++++ N + G I +
Sbjct: 20 WFRRYFPQLTQGALQKLLRTGQIRVDG----------------KRVEANTRLARGQEIRI 63
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEID-----YLRRLVKYRDSAILVLNKPPKVPLKG 225
P + EG P+ P E+ L R++ ++D +I+ LNKP +P++G
Sbjct: 64 P-PIPEG---------PAPDTGPKVREVSPEDAKALERMILFQDESIIALNKPHGLPVQG 113
Query: 226 HLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKS 285
+ +D + A L + + E P+LVHRLDR++SG++L+ R + + S L F +
Sbjct: 114 GPNIKKHLDGMLDA-LRFGHEERPRLVHRLDRDTSGVILLARDQRAASFLAKAFRSRDAK 172
Query: 286 KSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEA 345
K+ YWA+V+G P+ + G I PL+K + ER++ A+ G E
Sbjct: 173 KT---------------YWAIVVGQPQYEAGRIDMPLAKQG-GGPQGERVVPAE--GKEG 214
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ A+TEY +W+EL PLT R HQLRVHCA AL TPI+GD KYG
Sbjct: 215 A-FAVTEYTTRDVARRHATWLELHPLTGRTHQLRVHCASALETPILGDGKYG 265
>gi|338739364|ref|YP_004676326.1| pseudouridylate synthase [Hyphomicrobium sp. MC1]
gi|337759927|emb|CCB65758.1| pseudouridylate synthase [Hyphomicrobium sp. MC1]
Length = 331
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 165/376 (43%), Gaps = 76/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W + +F EV + +Q G V+++ ++ + N+ + GA I +
Sbjct: 25 WFRVHFPEVGYTYLQKLLRSGQVRVDS----------------KRAQANDRLNVGAEIRV 68
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P + + + S P G + D I+ +++ + D +LVLNKP + ++G
Sbjct: 69 PAIVRQPKKSGPGLQAPPGVSKGDRDTIE---KMILFEDDYVLVLNKPFGLAVQGGTGTK 125
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + E P+LVHRLDR+++G+LL+ +T+E+ + L F + +K+
Sbjct: 126 KHIDGMLEGMADRFGGERPRLVHRLDRDTTGVLLVAKTREAAAKLGRTFQTRSAAKT--- 182
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G PK QG + A L K DG +R+ A+ + + A
Sbjct: 183 ------------YWALVKGVPKPPQGKVEAALVKASGPDG--DRVRKAKPGEQDVAMHAT 228
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
T Y V+ + +W+ L+P+T R+HQLR H +G PIVGD KY VH MP
Sbjct: 229 THYSVIDRAAHKTAWVSLKPVTGRQHQLRAHM-HLIGHPIVGDNKYEGDVH-----MPAE 282
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
+I+ LHLH R L + P P G +
Sbjct: 283 NIDKK--------------------------LHLHARRL----VIP----HPKGGKTIDV 308
Query: 471 VASMPSHMKISWNLMS 486
A +P HM+ +W L+
Sbjct: 309 TAPLPDHMRRTWELLG 324
>gi|254476979|ref|ZP_05090365.1| pseudouridine synthase, RluD [Ruegeria sp. R11]
gi|214031222|gb|EEB72057.1| pseudouridine synthase, RluD [Ruegeria sp. R11]
Length = 348
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/353 (31%), Positives = 170/353 (48%), Gaps = 65/353 (18%)
Query: 145 VEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNP---------NA 195
V QG+++ + + E+ G R+ S VE + R +P+ L P +A
Sbjct: 29 VSQGRIEKM--CRKGELRLDGGRVKAS-SRVEAGQTVRVPPLPASDLKPAEAPSRRISDA 85
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D +R V Y+D A++VLNKP + ++G +D L+ A L +D E P+LVHRL
Sbjct: 86 D-AKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSEA-LKFDAEEKPRLVHRL 143
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG+L++ RT+++ LT F A + YWALV G P
Sbjct: 144 DKDTSGVLVLARTRQAAQALTAAFRH---------------HATRKIYWALVAGVPTPYL 188
Query: 316 GIIHAPLSKV--LLDDGKTERIILAQNSGLEAS---QEAMTEYRVLGPMINGCSWIELRP 370
G I L K G+ E++I ++ ++++ + + T+Y L + + +W+ + P
Sbjct: 189 GEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTQYATLYRVASRAAWVAMEP 248
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDV 430
+T R HQLR H AE +G PI GD KYG SG+ DG
Sbjct: 249 ITGRTHQLRAHMAE-IGHPIAGDGKYG-----------------GSGQE---NLGDGWGA 287
Query: 431 QKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWN 483
Q G ++SK LHLHCR + ++ PT + KP L A +P HMK SW+
Sbjct: 288 QLGGIISKK--LHLHCRRMAFEH--PT-TKKP-----LSITAPLPEHMKESWD 330
>gi|114766871|ref|ZP_01445793.1| ribosomal large subunit pseudouridine synthase C [Pelagibaca
bermudensis HTCC2601]
gi|114540917|gb|EAU43977.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
HTCC2601]
Length = 350
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 167/386 (43%), Gaps = 81/386 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM-GDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
W+K F +Q I+ KG ++++ + +E GQ +++ + EPG
Sbjct: 21 WLKRQFPHLQQGRIEKMCRKGELRVDGGRCKAATRLEVGQ-----QVRVPPLPEPG---- 71
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEID----YLRRLVKYRDSAILVLNKPPKVPLKG 225
P+ P A D +R V YRD I+ LNKPP +P++G
Sbjct: 72 ---------------ETPAPAAKPKATVSDADAKMIRDAVIYRDDHIIALNKPPGLPVQG 116
Query: 226 HLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKS 285
+D LA A L +DY+E P+LVHRLD+++SG+LL+ RT+E LT
Sbjct: 117 GSKQERHVDGLAEA-LRFDYDEKPRLVHRLDKDTSGVLLLARTREIAQALTGAIRHKQTR 175
Query: 286 KSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV--LLDDGKTERIILAQNSGL 343
K YWA+V G P G I L K G+ E++I +
Sbjct: 176 KI---------------YWAVVAGVPTPYLGEIRFGLVKAPGHGKSGEGEKMICVHPREM 220
Query: 344 E---ASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFV 400
+ ++ A T Y L + SW+ L P+T R HQLR H AE +G PI+GD KYG
Sbjct: 221 DRTPGAKRAHTLYATLYRVAGRASWVALEPITGRTHQLRAHMAE-IGHPIIGDGKYG--- 276
Query: 401 HRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSS 460
SG+ DG Q G V+SK LHLH R + ++
Sbjct: 277 --------------GSGQE---NLGDGWGAQLGGVISKK--LHLHARSM---TFLHPVTK 314
Query: 461 KPDGPDLLRFVASMPSHMKISWNLMS 486
KP + AS+P+HM +W +
Sbjct: 315 KP-----VTVTASLPAHMANTWETLG 335
>gi|154253208|ref|YP_001414032.1| RluA family pseudouridine synthase [Parvibaculum lavamentivorans
DS-1]
gi|154157158|gb|ABS64375.1| pseudouridine synthase, RluA family [Parvibaculum lavamentivorans
DS-1]
Length = 330
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 150/338 (44%), Gaps = 67/338 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISK-------RYDTIPSGTLNPNADEIDYLRRLVKYR 208
++T +V GAR + G++ + P P+ D+ + LR V Y+
Sbjct: 38 LRTGQVRVDGARAKANARLATGQVVRVPPLGEDADKQAPKAVHAPSVDDAEMLRANVIYK 97
Query: 209 DSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRT 268
D ++LVLNKP + ++G +D + A L +D E P+LVHRLDR++SG+L++ RT
Sbjct: 98 DKSVLVLNKPVGLAVQGGTKTERHLDGMLDA-LIFDAKERPRLVHRLDRDTSGVLVLART 156
Query: 269 KESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLD 328
++ + L F + K YWALV+G P +QG I LSK
Sbjct: 157 AKAAAALAQAFKQKDAQKI---------------YWALVVGVPVPRQGTIDLALSK---Q 198
Query: 329 DGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGT 388
G + A G E +++A+T + + + +W+ PLT R HQ+R H A A+ T
Sbjct: 199 GGPRAERVFAAKRGDEGARDAVTHFSTVSTAAHTLAWVAFMPLTGRTHQIRAHAA-AIET 257
Query: 389 PIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRE 448
PIVGD KYG V+ P P K LHLH R
Sbjct: 258 PIVGDGKYGG-----------VNAHPGGEIPRK--------------------LHLHARS 286
Query: 449 LKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ + PDG L A +P HMK SW L+
Sbjct: 287 ID--------IAHPDG-GRLHVEADLPPHMKTSWKLLG 315
>gi|330805203|ref|XP_003290575.1| hypothetical protein DICPUDRAFT_81306 [Dictyostelium purpureum]
gi|325079283|gb|EGC32890.1| hypothetical protein DICPUDRAFT_81306 [Dictyostelium purpureum]
Length = 583
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 148/274 (54%), Gaps = 37/274 (13%)
Query: 155 KIKTNEVMEPGARIFLPV-SMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
K+K N+ +E G+ I+ P ++++ ++ + P+ + DEI ++ V Y+D +L
Sbjct: 249 KMKFNDKVEVGSWIYFPSQALLDQHMADINE--PTKYTRLSDDEIKEIKESVLYKDEHLL 306
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G + +D + L ++ +E PKLVHRLD+ +SG+L++GR++ + +
Sbjct: 307 VLNKPQGLSVQGGSGLKKHLDMMLNH-LRFEKSENPKLVHRLDKATSGILILGRSRLAAT 365
Query: 274 LLTWLFSD--VNKSKSLSKAWNDACE----------------------------AMYQRY 303
+ F V+ K + +N E + + Y
Sbjct: 366 AMAEKFELKLVSSKKKEKEKFNKDNERENKKNSSKKKKDTKDEEIDDDEDLENKGIKKTY 425
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
WAL+ G+PK ++G I APL KV++ G E++I A G + ++ A+TEY+V+ ++
Sbjct: 426 WALIAGAPKPREGRIRAPLKKVMI--GGEEKVIPALKIG-DGAKLAITEYKVIQSSLDNQ 482
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
S++ L P T R HQLRVHCA L PI+GD KYG
Sbjct: 483 SFVALWPETGRTHQLRVHCASVLNAPIIGDTKYG 516
>gi|399991417|ref|YP_006571657.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398655972|gb|AFO89938.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 343
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 168/365 (46%), Gaps = 70/365 (19%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEP---GARIFLPVSMVEGRISKRY 183
H ++G ++ C G+ ++ G++K ++ +V+ GA P RIS+
Sbjct: 23 HVSQGRIEKMC-RKGELRLDGGRVKANSRVAAGQVVRVPPLGASDLKPAEAPSYRISEA- 80
Query: 184 DTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY 243
+ +R V Y+D A++VLNKP + ++G +D L+AA L +
Sbjct: 81 -------------DAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSAA-LQF 126
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
D E P+LVHRLD+++SG+L++ RT+ + LT F A + Y
Sbjct: 127 DAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFRH---------------RATRKIY 171
Query: 304 WALVIGSPKEKQGIIHAPLSKV--LLDDGKTERIILAQNSGLEAS---QEAMTEYRVLGP 358
WALV G P G I L K G+ E++I ++ ++++ + + T Y L
Sbjct: 172 WALVAGVPTPYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYR 231
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGK 418
+ + +W+ + P+T R HQLR H AE +G PI GD KYG
Sbjct: 232 VASRAAWVAMEPITGRTHQLRAHMAE-IGHPIAGDGKYGGSSQENLG------------- 277
Query: 419 PYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
DG Q G ++SK LHLHCR + ++ PT + KP L A +P HM
Sbjct: 278 -------DGWGAQLGGIISKK--LHLHCRRMAFEH--PT-TKKP-----LSITAPLPDHM 320
Query: 479 KISWN 483
K SW+
Sbjct: 321 KDSWD 325
>gi|400755741|ref|YP_006564109.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis 2.10]
gi|398654894|gb|AFO88864.1| ribosomal large subunit pseudouridine synthase C [Phaeobacter
gallaeciensis 2.10]
Length = 348
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 168/365 (46%), Gaps = 70/365 (19%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEP---GARIFLPVSMVEGRISKRY 183
H ++G ++ C G+ ++ G++K ++ +V+ GA P RIS+
Sbjct: 28 HVSQGRIEKMC-RKGELRLDGGRVKANSRVAAGQVVRVPPLGASDLKPAEAPSYRISEA- 85
Query: 184 DTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY 243
+ +R V Y+D A++VLNKP + ++G +D L+AA L +
Sbjct: 86 -------------DAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGLSAA-LQF 131
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
D E P+LVHRLD+++SG+L++ RT+ + LT F A + Y
Sbjct: 132 DAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFRH---------------RATRKIY 176
Query: 304 WALVIGSPKEKQGIIHAPLSKV--LLDDGKTERIILAQNSGLEAS---QEAMTEYRVLGP 358
WALV G P G I L K G+ E++I ++ ++++ + + T Y L
Sbjct: 177 WALVAGVPTPYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYR 236
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGK 418
+ + +W+ + P+T R HQLR H AE +G PI GD KYG
Sbjct: 237 VASRAAWVAMEPITGRTHQLRAHMAE-IGHPIAGDGKYGGSSQENLG------------- 282
Query: 419 PYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
DG Q G ++SK LHLHCR + ++ PT + KP L A +P HM
Sbjct: 283 -------DGWGAQLGGIISKK--LHLHCRRMAFEH--PT-TKKP-----LSITAPLPDHM 325
Query: 479 KISWN 483
K SW+
Sbjct: 326 KDSWD 330
>gi|427429389|ref|ZP_18919424.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
gi|425880582|gb|EKV29278.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
Length = 325
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 151/287 (52%), Gaps = 45/287 (15%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F +++ ++ G ++++ ++ K+N+ +E G + +
Sbjct: 21 WFKRHFPDLKHGRLEKLLRTGQIRVDG----------------KRAKSNQRLEAGQAVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P + ++ D P + + +R V + D ++VLNKPP + +G +
Sbjct: 65 PP------LGEQPDLPPDDEPRVSQADAAMIRACVIHMDDDVIVLNKPPGLATQGGTGTN 118
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A L YDY + P+LVHRLDR++SG+L++GRT ++ S+L F KS+ K
Sbjct: 119 RHIDGMLEA-LRYDYPDKPRLVHRLDRDTSGVLVVGRTAKAASVLAAAF----KSRDARK 173
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWA+V+G+PK +G + APL+K G ER+ + ++ G + A+
Sbjct: 174 V-----------YWAVVVGAPKPSEGRLSAPLAKAPGKAG--ERMEVDEDWG----KPAV 216
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
T +R + + +W+E+ PLT R HQLRVH A A+GTPI+GD KYG
Sbjct: 217 TVFRTVEAVAGKAAWLEMEPLTGRTHQLRVHAA-AMGTPILGDGKYG 262
>gi|66808785|ref|XP_638115.1| hypothetical protein DDB_G0285543 [Dictyostelium discoideum AX4]
gi|60466557|gb|EAL64609.1| hypothetical protein DDB_G0285543 [Dictyostelium discoideum AX4]
Length = 718
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 147/280 (52%), Gaps = 43/280 (15%)
Query: 155 KIKTNEVMEPGARIFLPVSMV-EGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
K+K N+ ++ G+ I+ P ++ + +I+ D P + EI +R V Y+D I+
Sbjct: 381 KLKFNDKVQVGSWIYFPAQVILDQQIADIKD--PQKYARLSDQEIKEIRESVLYKDEHII 438
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G ++ +D + + L ++ +E PKLVHRLDR +SG+L++GR+K + S
Sbjct: 439 VLNKPQGLSVQGGTGLNKHLDMMLSH-LRFEKDENPKLVHRLDRNTSGILILGRSKLAAS 497
Query: 274 LLTWLFS-----------------------DVNKSKSLSKA-------------WNDACE 297
+T F + N SK L + + +
Sbjct: 498 AMTKKFELKLVKENKKDKDDNNNNKNNKNNNKNDSKRLFREKEVFNNNKNKDEENENYSK 557
Query: 298 AMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG 357
+ + YWAL+ +P K+G I APL KV++ G E+++ +G + ++ A+TEY+VL
Sbjct: 558 GIKKTYWALLGSTPTPKEGRIRAPLKKVVV--GGFEKVVPTLTTG-DGAKIAITEYKVLE 614
Query: 358 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ +I L P T R HQLRVHCA L TPI+GD KYG
Sbjct: 615 SSLTKHCFISLWPETGRTHQLRVHCASVLNTPIIGDPKYG 654
>gi|163796887|ref|ZP_02190844.1| Pseudouridine synthase, RluD [alpha proteobacterium BAL199]
gi|159177876|gb|EDP62425.1| Pseudouridine synthase, RluD [alpha proteobacterium BAL199]
Length = 331
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 102/333 (30%), Positives = 152/333 (45%), Gaps = 64/333 (19%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
R++K E +E G I +P V ++ P G +A+ + LRRL+ + D +L
Sbjct: 48 RRVKAGERLEAGQTIRIPPMDVPAASAEAVKAKPGG--KGDAETAEQLRRLILHTDRDVL 105
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
+NKP + ++G + +D A L +D E P+LVHRLD+++SG+LL+GR+ ++
Sbjct: 106 AINKPAGLAVQGGSGITKHVDG-ALDGLMFDAKERPRLVHRLDKDTSGVLLVGRSYQAAR 164
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F ++KS K YWALV+G PK G I + K+ G+
Sbjct: 165 RLTEAF----RAKSAMKI-----------YWALVVGEPKPNAGSIEGAIGKLPGRAGEKM 209
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
I LE + A T Y + + +W+ L P+T R HQLRVH AE LGTPI+GD
Sbjct: 210 AI------DLENGKRAFTRYVTVERLGGKVTWVALFPVTGRTHQLRVHMAE-LGTPILGD 262
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KYG G L +G +S+ LHLH R ++
Sbjct: 263 GKYG-------------------GAEAFL---------QGEGVSRK--LHLHARAIR--- 289
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P +P + +A + HM SW
Sbjct: 290 -IPDAKGRP-----VEVIAPLADHMARSWAFFG 316
>gi|85703848|ref|ZP_01034951.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
217]
gi|85671168|gb|EAQ26026.1| ribosomal large subunit pseudouridine synthase C [Roseovarius sp.
217]
Length = 347
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 160/354 (45%), Gaps = 60/354 (16%)
Query: 144 FVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNAD------- 196
F GQ++ + + EV G R+ P + +E S R +P P
Sbjct: 26 FPHVGQVQIEKMCRKGEVRVDGGRVK-PATRLEVGQSVRIPPLPDTDERPTGALARISPA 84
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
+ ++ V YRD ++ LNKPP +P++G +D LA A L + E P+LVHRLD
Sbjct: 85 DAKMIQSCVIYRDDHVIALNKPPGLPVQGGSKQTRHVDGLAEA-LRFGAEEKPRLVHRLD 143
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SG+LL+ RT+E+ LT F N K YWA V G P + G
Sbjct: 144 KDTSGVLLLARTREAAKGLTAAFRHRNTRKI---------------YWAAVAGVPTPRMG 188
Query: 317 IIHAPLSKVLLDD--GKTERIILAQNSGLEAS---QEAMTEYRVLGPMINGCSWIELRPL 371
+ L K G+ E++I +E++ + A T+Y V+ SW+ L P+
Sbjct: 189 TVRYGLVKAPGHGAKGEGEKMICVHPREVESTPGAKPATTDYAVIEAAGARTSWMALIPV 248
Query: 372 TCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQ 431
T R HQLR H AE +G P+VGD KYG SG+ DG Q
Sbjct: 249 TGRTHQLRAHMAE-IGHPVVGDGKYG-----------------GSGQE---NLGDGWGAQ 287
Query: 432 KGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
G +S+ LHLH R LK ++ P +L A +P HM+ +W+L
Sbjct: 288 LGGDVSR--KLHLHARSLKIEH--------PVSRAILHITAPLPEHMQRTWDLF 331
>gi|372278301|ref|ZP_09514337.1| ribosomal large subunit pseudouridine synthase C [Oceanicola sp.
S124]
Length = 350
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 174/381 (45%), Gaps = 80/381 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSF-VEQGQMKPIRKIKTNEVMEP--GAR 167
W++ F ++ I+ KG ++++ + S + GQ+ + I E EP G R
Sbjct: 21 WLRRTFPQLTQGRIEKMCRKGELRVDGGRVKSSTRLSPGQILRVPPIPVGEAPEPESGPR 80
Query: 168 IFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHL 227
I +AD + ++ V ++D I+ LNKPP +P++G
Sbjct: 81 IL------------------------DAD-VKMMQAAVLWKDDHIIALNKPPGLPVQGGS 115
Query: 228 PVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKS 287
+D L+ A L + Y+E P+LVHRLD+++SGLLL+ RT+E+ + LT F +S+
Sbjct: 116 KQTRHVDGLSEA-LKFGYDEKPRLVHRLDKDTSGLLLLARTREAAAKLTAAF----RSRE 170
Query: 288 LSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV--LLDDGKTERIILAQNSGLEA 345
K YWALV G P G I L K G+ E++I +E+
Sbjct: 171 TRKI-----------YWALVAGVPHPYMGTIKFGLVKAPGHGSGGEGEKMICVHPRDIES 219
Query: 346 S---QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHR 402
+ + A+++Y VL + +W+ L P+T R HQLR H AE +G P++GD KYG
Sbjct: 220 TPGAKRAVSDYSVLWRLGQRAAWVGLVPVTGRTHQLRAHMAE-IGHPMIGDGKYGGSSQE 278
Query: 403 RWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKP 462
DG Q G +S+ LHLH R L+ + F + KP
Sbjct: 279 NLG--------------------DGWGAQLGGEISRK--LHLHARLLRFTHPF---TGKP 313
Query: 463 DGPDLLRFVASMPSHMKISWN 483
+ A +P HMK SW+
Sbjct: 314 -----VELEAPLPEHMKRSWD 329
>gi|254449547|ref|ZP_05062984.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
gi|198263953|gb|EDY88223.1| ribosomal large subunit pseudouridine synthase C [Octadecabacter
arcticus 238]
Length = 347
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 110/393 (27%), Positives = 169/393 (43%), Gaps = 98/393 (24%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W+K F ++Q I+ KG ++++ ++K+N +E G + +
Sbjct: 21 WIKRRFAQLQQGGIEKMCRKGEIRVDGG----------------RVKSNTRVEVGQTVRI 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEID------------YLRRLVKYRDSAILVLNKP 218
P P+ADE+D ++ V Y+D ++VLNKP
Sbjct: 65 PPL-------------------PDADEVDDRPRDMTKADIQLIQGCVIYKDDHVIVLNKP 105
Query: 219 PKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWL 278
+P +G +D +A A L + Y+E P+LVHRLD+++SG+L++ RT+ + LT
Sbjct: 106 AGLPTQGGSKQLRHVDGMAEA-LRFGYDERPRLVHRLDKDTSGVLVLARTRMAAKSLTEA 164
Query: 279 FSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK--TERII 336
F N K YWALV G P K G I L K GK ER+
Sbjct: 165 FRHRNTEKI---------------YWALVAGVPIPKLGSIKYGLVKQGGHGGKGDNERMK 209
Query: 337 LAQNSGLE---ASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
++ ++ A+T Y VL + + +W+ L P+T R HQLR H AE +G PIVGD
Sbjct: 210 CVHPKDVDKTFGAKRALTNYTVLTSLADRTAWVALTPVTGRTHQLRAHIAE-IGHPIVGD 268
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KYG ++ G DG G + + LHLH R L+ ++
Sbjct: 269 GKYGAAA-----------VQDNPG--------DGWGAGMGEEIGRK--LHLHARSLRIEH 307
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P+ L AS+P HM+ +W
Sbjct: 308 --------PETGKELWIKASLPQHMEKTWGFFG 332
>gi|254459621|ref|ZP_05073037.1| pseudouridine synthase, RluA family [Rhodobacterales bacterium
HTCC2083]
gi|206676210|gb|EDZ40697.1| pseudouridine synthase, RluA family [Rhodobacteraceae bacterium
HTCC2083]
Length = 347
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 172/381 (45%), Gaps = 74/381 (19%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
++K F +V +I+ KG ++++ ++K N +E G ++ +
Sbjct: 21 FLKRKFPQVTQGMIEKMCRKGELRLDGG----------------RVKANSRVETGMQLRI 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P + + K PS +A + ++R V Y+D ++ LNKP +P++G
Sbjct: 65 P-PLPDSAAPKH--AAPSKV---SAADTKFIRSCVIYKDDHVIALNKPAGLPVQGGTGHA 118
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D L A L YD+ E PKLVHRLD+++SG+L++GRT+ + + LT F N K
Sbjct: 119 RHVDGLLDA-LMYDFEERPKLVHRLDKDTSGVLILGRTRRATADLTASFRHRNTRKI--- 174
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDD--GKTERIILA---QNSGLEA 345
YWA + G P + G I L K G+ E++I + E
Sbjct: 175 ------------YWAAIAGVPNPRMGTIKYGLMKAPGHGARGEGEKMICIHPREVDQTEG 222
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
++ A+T+Y VL SW L P+T R HQLR H +E +G P+VGD KYG
Sbjct: 223 AKRALTDYAVLETAGQRTSWCALIPITGRTHQLRAHMSE-MGHPVVGDGKYG-------- 273
Query: 406 QMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGP 465
SG+ DG Q G LSK LHLH R L+ ++ P
Sbjct: 274 ---------GSGQE---NLGDGWGSQLGGDLSKK--LHLHARSLQIEH--------PSTK 311
Query: 466 DLLRFVASMPSHMKISWNLMS 486
L A +P HM+ +W+ +
Sbjct: 312 ATLHITAPLPDHMQRTWDTFA 332
>gi|126461165|ref|YP_001042279.1| RluA family pseudouridine synthase [Rhodobacter sphaeroides ATCC
17029]
gi|126102829|gb|ABN75507.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides ATCC 17029]
Length = 346
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/354 (32%), Positives = 162/354 (45%), Gaps = 62/354 (17%)
Query: 145 VEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPS-GTLNPNADEI----- 198
V QG ++ + +T +V GAR + EG + R +P P A +
Sbjct: 29 VTQGAVEKM--CRTGQVRVDGARAKASDRVAEG-MEIRVPPLPDPDAPRPQASRVTKSDE 85
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ V YRD+ I+VLNKPP +P +G +D L A L + Y E PKLVHRLD+
Sbjct: 86 QMIQDCVIYRDNDIIVLNKPPGLPSQGGSGQGERHVDGLTEA-LKFGYKERPKLVHRLDK 144
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG+L++ RT L+ F N K YWALV G P KQG
Sbjct: 145 DTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWALVAGVPSPKQGS 189
Query: 318 IHAPLSKV--LLDDGKTERIIL---AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
I L K G+ E+++ A+ ++ A T++ L + + C+W+ L P+T
Sbjct: 190 IKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGSRCAWMALSPIT 249
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
R HQLR H AE LG PIVGD KYG SG+ DG Q
Sbjct: 250 GRTHQLRAHMAE-LGHPIVGDGKYG-----------------GSGQE---NLGDGWGAQI 288
Query: 433 GSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
G +S+ LHLH R L ++ P DL+ F A +P HM +W L+
Sbjct: 289 GGEMSRK--LHLHARSLTIEH--------PIKKDLVTFTAPLPGHMAKTWKLLD 332
>gi|114570313|ref|YP_756993.1| ribosomal large subunit pseudouridine synthase C [Maricaulis maris
MCS10]
gi|114340775|gb|ABI66055.1| ribosomal large subunit pseudouridine synthase C [Maricaulis maris
MCS10]
Length = 330
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 144/291 (49%), Gaps = 51/291 (17%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM-GDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
W K F V ++Q KG ++++ + GDS V +GQ +I+ + EPG R
Sbjct: 21 WFKRRFPHVSAIMVQKLCRKGQIRVDGGRVKGDSRVHEGQ-----EIRIPPLPEPGERP- 74
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
PV+ R+S ++I Y++ LV Y+D ++ NKP + ++G
Sbjct: 75 -PVN----RMSD--------------EDIAYVKSLVIYQDDELIAFNKPAGLAVQGGSKT 115
Query: 230 HNSMDALAAAALSYDYNEG---PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSK 286
+D + A + EG P+LVHRLD+++SG+L++G+ ++ + L F K
Sbjct: 116 TRHLDGMLDA-----FGEGLDRPRLVHRLDKDTSGILIVGKGPKATARLAKAFQSHKTRK 170
Query: 287 SLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER-IILAQNSGLEA 345
+ YWA+ IG PK K G I + K +ER ++A G E
Sbjct: 171 T---------------YWAIAIGVPKPKMGEIKGFMRKAAASGVDSERETMVAAGHGDEG 215
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+Q A+T Y V+G SW+ LRP+T R HQLRVH A A+GT I+GD KY
Sbjct: 216 AQHALTRYVVIGEAGQKASWVALRPVTGRTHQLRVHLA-AMGTAILGDKKY 265
>gi|83593991|ref|YP_427743.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum ATCC 11170]
gi|386350743|ref|YP_006048991.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum F11]
gi|83576905|gb|ABC23456.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum ATCC 11170]
gi|346719179|gb|AEO49194.1| ribosomal large subunit pseudouridine synthase C [Rhodospirillum
rubrum F11]
Length = 330
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 140/259 (54%), Gaps = 31/259 (11%)
Query: 142 DSFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEG-RISKRYDTIPSGTLNPNAD-EI 198
+ + GQ++ +++K+ E +E G ++ +P E S +P P A+ EI
Sbjct: 34 EKLLRTGQIRVDGKRVKSGERLEAGQQVRVPPLGDEAPSPSSSGHAVP----RPAAEGEI 89
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
LRR + + D+ ++V+NK + ++G + +D + + D E P+LVHRLD++
Sbjct: 90 RALRRAILHEDAHLIVINKEAGLAVQGGTGTPHHLDGMLESL--ADGGETPRLVHRLDKD 147
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+L++ RT+ + LT F +S+ K YWA+V+G P QG I
Sbjct: 148 TSGVLVLARTQAAARALTSAF----RSREALKV-----------YWAIVVGRPPMLQGTI 192
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
L+KV G+ ER+ + + G + A+T++RV+ C+W+EL P T R HQL
Sbjct: 193 KGALAKVA--GGRGERMEINEEEG----KRAVTDFRVVDQAAKACAWVELHPRTGRTHQL 246
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVHC E +GTPI+GD KYG
Sbjct: 247 RVHCLE-MGTPILGDGKYG 264
>gi|149187024|ref|ZP_01865331.1| pseudouridylate synthase [Erythrobacter sp. SD-21]
gi|148829313|gb|EDL47757.1| pseudouridylate synthase [Erythrobacter sp. SD-21]
Length = 376
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 134/285 (47%), Gaps = 62/285 (21%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
EI+ ++ + + LV+NKPP + +G N +D L A + + P+LVHRLD
Sbjct: 88 EIEQAEAMLIEQTKSALVINKPPGLATQGGTNTFNHVDGLLDAYMEEGEEQRPRLVHRLD 147
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SG+LL+ RT S + + FS + K YWALV+G P +QG
Sbjct: 148 KDTSGILLVARTPGSAAFFSKRFSGRSAKKI---------------YWALVVGVPDIRQG 192
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+I APL+K G E++ + G A T+YRV+ +W+EL+P+T R H
Sbjct: 193 VIEAPLAKQPGSGG--EKMHVDHEGGAPAK----TKYRVVESAGKKVAWLELQPMTGRTH 246
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVL 436
QLRVHCA A+G PIVGD KYG GK L GSV
Sbjct: 247 QLRVHCA-AMGHPIVGDGKYG-------------------GKEAFL---------TGSVS 277
Query: 437 SKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
K +HLH R L D+ PDG L A +P H S
Sbjct: 278 RK---MHLHARRLIIDS--------PDG-GKLDVTAELPEHFAAS 310
>gi|407771062|ref|ZP_11118425.1| RluA family pseudouridine synthase [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407285951|gb|EKF11444.1| RluA family pseudouridine synthase [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 365
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 137/269 (50%), Gaps = 38/269 (14%)
Query: 144 FVEQGQMK-PIRKIKTNEVMEPGARIFLPVS--MVEGRIS----KRYDT------IPSGT 190
F+ GQ++ ++ K + +EPG + +P + M G + YD + SG
Sbjct: 37 FLRGGQIRVDGKRAKAGQRLEPGQEVRVPPAPVMSGGGMGPWAEGNYDAANAAQHVKSGP 96
Query: 191 LNPNA--DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG 248
NA +E+ LR V + D +L +NKP + ++G +D + A L D E
Sbjct: 97 AKSNATEEELQALRDSVIFYDEVVLAINKPAGLAVQGGTNTDLHVDGMLDA-LKLDSKER 155
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
PKLVHRLD+++SG+LL+ R+ + + LT F D K YWA+V
Sbjct: 156 PKLVHRLDKDTSGVLLLARSASAANALTKAFKDKTTRKL---------------YWAIVT 200
Query: 309 GSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIEL 368
G+P E++G+I APL+K G E++++ + G + A T YR L +W+ L
Sbjct: 201 GAPDEREGLIDAPLAKHGGKGG--EKMVIDEKEG----KSAQTIYRQLARAGRRAAWLAL 254
Query: 369 RPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
PLT R HQLR HC +A+ PI+GD KYG
Sbjct: 255 SPLTGRTHQLRAHC-QAIECPILGDGKYG 282
>gi|254436973|ref|ZP_05050467.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
gi|198252419|gb|EDY76733.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
Length = 347
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 166/381 (43%), Gaps = 74/381 (19%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W+K F +Q I+ KG ++++ ++KTN +E G +I +
Sbjct: 21 WIKRRFAHLQQGGIEKMCRKGEIRVDGG----------------RVKTNTRVEVGQKIRI 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P + +R + +I ++ V Y+D ++ LNKP +P +G
Sbjct: 65 PPLPDANEVDERPRDMTKA-------DIQLIQGCVIYKDDHVIALNKPAGLPTQGGSKQL 117
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D +A A L + Y+E P+LVHRLD+++SG+L++ RT+ + LT F N K
Sbjct: 118 RHVDGMAEA-LRFGYDEKPRLVHRLDKDTSGVLILARTRMAAKSLTDAFRHRNTEKI--- 173
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK--TERIILAQNSGLE---A 345
YWALV G P K G + L K GK ER+ ++
Sbjct: 174 ------------YWALVAGVPIPKLGSVKYGLVKQGGHGGKGDNERMKCVHPKDVDKTFG 221
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
++ A+T Y VL + + +W+ L P+T R HQLR H AE +G PIVGD KYG
Sbjct: 222 AKRALTNYTVLTSLADRTAWVALTPVTGRTHQLRAHMAE-IGHPIVGDGKYG-------- 272
Query: 406 QMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGP 465
+ P DG G + + LHLH R L+ ++ P+
Sbjct: 273 ------AQAVQDNP-----GDGWGAGMGEEIGRK--LHLHARSLRIEH--------PETG 311
Query: 466 DLLRFVASMPSHMKISWNLMS 486
L AS+P HM +W+
Sbjct: 312 KELWIKASLPPHMGKTWSFFG 332
>gi|381166027|ref|ZP_09875245.1| Pseudouridine synthase [Phaeospirillum molischianum DSM 120]
gi|380684759|emb|CCG40057.1| Pseudouridine synthase [Phaeospirillum molischianum DSM 120]
Length = 331
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 172/379 (45%), Gaps = 87/379 (22%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F V +++ G V+ V+ G++K +++ T + +
Sbjct: 21 WFKRHFPTVSHGLLEKWLRTGQVR----------VDGGRVKASQRLSTGQKVRVPPLPVG 70
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADE--IDYLRRLVKYRDSAILVLNKPPKVPLKGHLP 228
P +V+ P DE LR V Y D ++VLNKPP + ++G
Sbjct: 71 PAPVVQ-------------APRPTVDERTARALRDAVLYIDDDVIVLNKPPGLAVQGGTG 117
Query: 229 V-HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKS 287
+ N +DA+ L +D + P+LVHRLD+++SG+LL+GR+ + + L LF KS+S
Sbjct: 118 MADNHLDAMLDV-LRFDAPDRPRLVHRLDKDTSGVLLLGRSVGATAKLAALF----KSRS 172
Query: 288 LSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQ 347
K YWALV G PK +QG I APL K L E++ + + G +
Sbjct: 173 AQKC-----------YWALVAGVPKLRQGRIDAPLGK--LGGKGVEKMGVDEEDG----R 215
Query: 348 EAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQM 407
A+T YR++ + +W+E+ P T R HQLR HC LGTPI+GD KYG
Sbjct: 216 HAVTYYRIVDSALKRAAWLEMEPRTGRTHQLRAHCL-LLGTPILGDGKYG---------- 264
Query: 408 PRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDL 467
GK + +G LS+ LHLH R L+ + P
Sbjct: 265 ---------GKDAMI---------EGFGLSRK--LHLHARALRLPH--------PRTGKR 296
Query: 468 LRFVASMPSHMKISWNLMS 486
L VA +P+H K ++L
Sbjct: 297 LEVVAPLPAHFKTGFDLFG 315
>gi|330993253|ref|ZP_08317189.1| Ribosomal large subunit pseudouridine synthase C [Gluconacetobacter
sp. SXCC-1]
gi|329759655|gb|EGG76163.1| Ribosomal large subunit pseudouridine synthase C [Gluconacetobacter
sp. SXCC-1]
Length = 322
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 137/282 (48%), Gaps = 48/282 (17%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDT 185
H +G +Q C GQ++ R+ +EPG + +P
Sbjct: 24 HLTQGALQKLC--------RTGQVRVDGRRATAATRLEPGQAVRVP-------------P 62
Query: 186 IPSGTLNP-------NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAA 238
IP+ + P +A ++ + ++V YRD ++VLNKP + ++G + + +DAL
Sbjct: 63 IPNASRPPPLAVKPLDARQVREINQMVIYRDDHVIVLNKPAGIAVQGGPGITHHIDALLD 122
Query: 239 AALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEA 298
+ P+LVHR+DR++SGLLL+ RT + L F +
Sbjct: 123 GLRDSPDDPRPRLVHRIDRDTSGLLLVARTPGVAAKLAAAFRGRD--------------- 167
Query: 299 MYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGP 358
+++ YWA+V+G P GII PL++ L G ++A+ +A A++EY VL
Sbjct: 168 VHKVYWAVVVGRPSPATGIIDQPLTR--LGAGAGAISVVAERGDADAVH-ALSEYEVLDA 224
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFV 400
SW+ L PLT R HQLRVHC EALG PI+GD KYG V
Sbjct: 225 AARKMSWLALSPLTGRTHQLRVHC-EALGNPILGDPKYGGDV 265
>gi|162148058|ref|YP_001602519.1| ribosomal large subunit pseudouridine synthase A [Gluconacetobacter
diazotrophicus PAl 5]
gi|209542674|ref|YP_002274903.1| RluA family pseudouridine synthase [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786635|emb|CAP56217.1| putative ribosomal large subunit pseudouridine synthase A
[Gluconacetobacter diazotrophicus PAl 5]
gi|209530351|gb|ACI50288.1| pseudouridine synthase, RluA family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 325
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 109/197 (55%), Gaps = 19/197 (9%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+R +V Y D ++VLNKP +P++G + + +DA+ D + P+LVHR+DR++S
Sbjct: 88 IRGMVIYSDDQVIVLNKPAGLPVQGGPGIIHHVDAMLDGLKDQDDDPRPRLVHRIDRDTS 147
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL+ RT + L F + K+ YWA+V+G P G+I
Sbjct: 148 GLLLLARTPGVAAKLAASFRGRDVRKT---------------YWAIVVGRPSPASGVIDQ 192
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL++ L G ++A +A+ A++EY VL SW+ L PLT R HQLRV
Sbjct: 193 PLAR--LGAGPGALTVVASRKDADAAH-ALSEYEVLDAAGRKLSWLALSPLTGRTHQLRV 249
Query: 381 HCAEALGTPIVGDYKYG 397
HC EALGTPI+GD KYG
Sbjct: 250 HC-EALGTPILGDPKYG 265
>gi|326388341|ref|ZP_08209937.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207073|gb|EGD57894.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
nitrogenifigens DSM 19370]
Length = 436
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 156/336 (46%), Gaps = 76/336 (22%)
Query: 157 KTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNA-----------DEIDYLRRLV 205
+T ++ G R + +V G+ + P GT P + +E+ R+V
Sbjct: 45 RTGQIRVDGKRADVDTRLVPGQTLR---VPPGGTQAPGSRGPRTRKPLTEEEMALAERIV 101
Query: 206 KYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLM 265
+D A +VLNKPP + +G H+ +D L A + D + P+LVHRLD+++SG+LL+
Sbjct: 102 LTQDRAAIVLNKPPGLATQGGSGTHSHVDGLLDA-YAGDNDPRPRLVHRLDKDTSGVLLI 160
Query: 266 GRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV 325
RT S + + FS + K YWALV+G P+ G I PL+K
Sbjct: 161 ARTPGSAAYFSRHFSGRSAKKI---------------YWALVMGIPEINDGYIDLPLAKQ 205
Query: 326 LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEA 385
G E++++ ++ Q A T YRV+ N +W+EL+PLT R HQLRVH A A
Sbjct: 206 PGTGG--EKMMVDESG---EGQTARTRYRVIDRAGNRAAWVELQPLTGRTHQLRVHMA-A 259
Query: 386 LGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLH 445
+G PIVGD KYG G+ L GS+ K LHLH
Sbjct: 260 IGHPIVGDGKYG-------------------GQAAFL---------SGSISRK---LHLH 288
Query: 446 CRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
R L L P P+G D + VA +P H S
Sbjct: 289 ARRL----LIP----HPEG-DTIDVVAPLPEHFAAS 315
>gi|332187840|ref|ZP_08389574.1| pseudouridine synthase, RluA family protein [Sphingomonas sp. S17]
gi|332012190|gb|EGI54261.1| pseudouridine synthase, RluA family protein [Sphingomonas sp. S17]
Length = 363
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 133/291 (45%), Gaps = 63/291 (21%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
DE + R +V ++D LVLNKPP + +G +D L A L ++ PKLVHRL
Sbjct: 88 DEAAFAREMVIHKDRDALVLNKPPGLATQGGTKTTTHVDGLLDA-LQFEAEGRPKLVHRL 146
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ R S + FS K YWALV+G P +
Sbjct: 147 DKDTSGALLVARNARSAAFFAKAFSGRTAKKI---------------YWALVVGVPSIED 191
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G I P++K G E++ + + +G Q A + YRV+ N C W+EL+P T R
Sbjct: 192 GTIELPIAKQPGTGG--EKMHVDEENG----QAARSRYRVIERAGNRCCWVELQPFTGRT 245
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A A+G PIVGD KYG G L G +
Sbjct: 246 HQLRVHMA-AIGHPIVGDGKYG-------------------GAAAFL---------TGGI 276
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
K +HLH R ++ D+ PDG + + A +PSH S N +
Sbjct: 277 SRK---MHLHARRIRVDH--------PDGGRIDQ-TAELPSHFAESMNQLG 315
>gi|424870801|ref|ZP_18294463.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393166502|gb|EJC66549.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 330
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 167/376 (44%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ ++ + I L ++D + L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPLDVDAKL--KSGPIAGRDLKHSSD-FELLSRMVLHEDDKVIVLNKPPGIAVQGGSGVA 121
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 122 RHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 177
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++ + I L K DG RI G + + A+
Sbjct: 178 ------------YWALVKGVPRKHEDKISTWLVKEPTADGDRMRI---AKHGEDGADHAI 222
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 223 SFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 268
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G V K LHLH R + D PT LR
Sbjct: 269 DDDPNWDFP-------------GGVQKK---LHLHARHI--DIPHPTGGR-------LRV 303
Query: 471 VASMPSHMKISWNLMS 486
A +PSHM +WNL+
Sbjct: 304 SAPLPSHMVQTWNLLG 319
>gi|349699577|ref|ZP_08901206.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter europaeus LMG 18494]
Length = 325
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 134/260 (51%), Gaps = 29/260 (11%)
Query: 145 VEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNP-------NADE 197
+ QG ++ + +T +V G R + G+ + R IP+ + P +A +
Sbjct: 28 LTQGALQKL--CRTGQVRVDGRRATAATRLAPGQ-AVRVPPIPNASRPPPLAVKPLDARQ 84
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+ + ++V YRD ++VLNKP + ++G + + +DAL + P+LVHR+DR
Sbjct: 85 VREINQMVVYRDDHVIVLNKPAGIAVQGGPGITHHIDALLDGLRDSPDDPRPRLVHRIDR 144
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLLL+ RT + L F + +++ YWA+V+G P GI
Sbjct: 145 DTSGLLLVARTPGVAAKLAAAFRGRD---------------VHKVYWAVVVGRPSPATGI 189
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I PL+K L G ++A+ +A A++EY VL SW+ L PLT R HQ
Sbjct: 190 IDQPLTK--LGAGAGAISVVAERGDADAVH-ALSEYEVLDAAGRKLSWLALSPLTGRTHQ 246
Query: 378 LRVHCAEALGTPIVGDYKYG 397
LRVHC EALG PI+GD KYG
Sbjct: 247 LRVHC-EALGNPILGDPKYG 265
>gi|126724897|ref|ZP_01740740.1| Pseudouridine synthase, RluD [Rhodobacterales bacterium HTCC2150]
gi|126706061|gb|EBA05151.1| Pseudouridine synthase, RluD [Rhodobacteraceae bacterium HTCC2150]
Length = 347
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 171/383 (44%), Gaps = 78/383 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W++ +F ++ ++ KG ++++ ++K N + G I +
Sbjct: 21 WMRRHFPDLSQGQVEKMCRKGEIRVDGG----------------RVKANTRVTQGQLIRI 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEID--YLRRLVKYRDSAILVLNKPPKVPLKGHLP 228
P + +G YD P + D + +V Y+D I+ LNKPP +P++G
Sbjct: 65 P-PLKDGPKKVYYD-------EPKISDADRKLMMDMVIYKDDYIIALNKPPGIPVQGGSG 116
Query: 229 VHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSL 288
+D L+ A L +D +E P+LVHRLD+++SG+LL+ R + S S LT +F +S+
Sbjct: 117 QKRHIDGLSEA-LRFDSDEKPRLVHRLDKDTSGVLLLARNQRSASELTAVF----RSRES 171
Query: 289 SKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLD--DGKTERIILAQNSGL--- 343
K YWA V G P K G I L K G E++I +
Sbjct: 172 RKI-----------YWAAVGGVPHPKMGTIRFGLVKAPGHGPSGGGEKMICIHPRDIDKT 220
Query: 344 EASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 403
+ ++ A T+Y V+ + +W+ L P+T R HQLR H AE LG PI+GD KYG
Sbjct: 221 DGAKRATTDYAVMTTLARRSAWMALVPVTGRTHQLRAHMAE-LGHPIIGDGKYG------ 273
Query: 404 WKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPD 463
SG+ DG Q G +SK LHLH R L + P ++
Sbjct: 274 -----------GSGQE---NLGDGWGAQLGGDISKN--LHLHARSLTLKH--PVTGAR-- 313
Query: 464 GPDLLRFVASMPSHMKISWNLMS 486
L VA +P HM +W +
Sbjct: 314 ----LHLVAELPRHMAATWKTVG 332
>gi|402487861|ref|ZP_10834676.1| pseudouridine synthase [Rhizobium sp. CCGE 510]
gi|401813029|gb|EJT05376.1| pseudouridine synthase [Rhizobium sp. CCGE 510]
Length = 329
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 167/376 (44%), Gaps = 78/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ +K+ I L ++D + L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPLDVD---AKKSGPIAGKDLKHSSD-FELLSRMVLHEDDKVIVLNKPPGIAVQGGSGVA 120
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 121 RHIDQMLEAWTS-PRGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 176
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++ + I L K DG RI G + + A+
Sbjct: 177 ------------YWALVKGVPRKHEDKISTWLVKEPTADGDRMRI---ARHGEDGADHAI 221
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 222 SFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 267
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G V K LHLH R + D P+ LR
Sbjct: 268 DDDPNWDFP-------------GGVQKK---LHLHARRI--DIPHPSGGR-------LRV 302
Query: 471 VASMPSHMKISWNLMS 486
A +PSHM +WNL+
Sbjct: 303 SAPLPSHMVQTWNLLG 318
>gi|304391488|ref|ZP_07373430.1| rRNA pseudouridylate synthase C [Ahrensia sp. R2A130]
gi|303295717|gb|EFL90075.1| rRNA pseudouridylate synthase C [Ahrensia sp. R2A130]
Length = 338
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 160/335 (47%), Gaps = 66/335 (19%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++KT +E G + +P ++ S + + S T+ DE D LR ++ Y D +LV
Sbjct: 51 RVKTASRLEAGQVVRIPP--LDSAASDKPLHMTSNTIRDRHDE-DVLRDMILYEDKKVLV 107
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G + S+D++ + L + P+L HRLDR++SG+L++ +T+ + +
Sbjct: 108 FNKPSGLAVQGGSGISRSVDSMLES-LRDKAGQKPRLCHRLDRDTSGVLVVAKTRGAAAA 166
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F K+ YWALV G P++K+G I L K +DG +R
Sbjct: 167 LTKSFRQRTTQKT---------------YWALVRGIPRQKEGRISTYLVKEQTEDG--DR 209
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ +A++ G + A++ YRV+ SW+EL P T R HQLRVH A+ +G PI+GD
Sbjct: 210 MRVAKH-GERHADHAVSFYRVIDSNPRTVSWVELSPHTGRTHQLRVH-ADHIGHPIIGDN 267
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELK---S 451
KY F W +MP G + + LHLH R ++
Sbjct: 268 KY--FSTENW-EMP------------------------GGIQKR---LHLHARRIRIPHP 297
Query: 452 DNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
D PTL A +P HM SWNL +
Sbjct: 298 DENQPTLD----------VTAPLPPHMVQSWNLFA 322
>gi|84685385|ref|ZP_01013283.1| ribosomal large subunit pseudouridine synthase C [Maritimibacter
alkaliphilus HTCC2654]
gi|84666542|gb|EAQ13014.1| ribosomal large subunit pseudouridine synthase C [Rhodobacterales
bacterium HTCC2654]
Length = 350
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 172/382 (45%), Gaps = 76/382 (19%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM-GDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
W K F V ++ KG ++++ + + VE GQ +++ + +PG R
Sbjct: 21 WFKRQFPHVPQGRVEKMCRKGEIRVDGGRVKASTRVEVGQ-----EVRIPPLPDPGERPA 75
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
P V + ++ +R V YRD I+ LNKPP +P +G
Sbjct: 76 APRPSVTDKDAQ------------------MIRDCVIYRDDHIIALNKPPGLPTQGGSKQ 117
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
+D LA L++ Y++ P+LVHRLD+++SG+LL+ RT++ LT F N K
Sbjct: 118 TRHVDGLAEV-LTFGYDDKPRLVHRLDKDTSGVLLLARTRQVAKDLTDAFRHRNTRKI-- 174
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER-----IILAQNSGLE 344
YWA+V G P ++G + L K G+ E I ++ + +E
Sbjct: 175 -------------YWAVVAGVPLPRKGTVKWGLVKAPGHGGQGEGEKMLCIHPSEVAKVE 221
Query: 345 ASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRW 404
++ A T+Y V+ + +W+ L P+T R HQLR H AE +G PIVGD KYG
Sbjct: 222 GAKRAETDYVVIENLAQRAAWVGLTPITGRTHQLRAHMAE-MGHPIVGDGKYG------- 273
Query: 405 KQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDG 464
SG+ DG G +SK LHLH R ++ ++ ++ KP
Sbjct: 274 ----------GSGQE---NLGDGWGAMLGGEISK--KLHLHARSIEIEH---PVTKKP-- 313
Query: 465 PDLLRFVASMPSHMKISWNLMS 486
+ A++P HM +W +
Sbjct: 314 ---IFIEAALPEHMARTWEQLG 332
>gi|340777611|ref|ZP_08697554.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter aceti NBRC 14818]
Length = 324
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 137/273 (50%), Gaps = 37/273 (13%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDT 185
H +G +Q C GQ++ ++++ N + PG + +P + + S+
Sbjct: 27 HLTQGALQKLC--------RTGQIRVDGKRVEANTRLVPGQSVRVPPIPMAAKPSR---D 75
Query: 186 IPSGTLNPN-ADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYD 244
+P LNP A EI R++V Y D I+VLNKP + +G + +D + D
Sbjct: 76 VPK-ALNPKLASEI---RKMVIYSDPQIIVLNKPSGLATQGGPGITQHVDMMLDGLREGD 131
Query: 245 YNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYW 304
+ P+LVHR+DR++SGLLL+ RT + L F + K+ YW
Sbjct: 132 -DPRPRLVHRIDRDTSGLLLLARTPGVAAKLAAAFRGRDVKKT---------------YW 175
Query: 305 ALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCS 364
A+V+G P G I PL+++ G I +A + E +Q A T+Y VL S
Sbjct: 176 AVVVGRPDPMSGEIDQPLARLGAGPGS---ITIAADRNDEDAQSARTDYEVLDSAARKFS 232
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
W+ L PLT R HQLRVHC E+LGTPI+GD KYG
Sbjct: 233 WLGLSPLTGRTHQLRVHC-ESLGTPILGDPKYG 264
>gi|163760834|ref|ZP_02167913.1| RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C [Hoeflea
phototrophica DFL-43]
gi|162281878|gb|EDQ32170.1| RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE C [Hoeflea
phototrophica DFL-43]
Length = 329
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 156/332 (46%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K++ ++PG + +P V+ + S + + T+ N D+ D L +++ + DS +LV
Sbjct: 49 RVKSDARLQPGQTVRIPPMGVDEKGSA---PLTAKTIR-NRDDGDVLSQMLLHEDSKVLV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V ++D + A E P+LVHRLDR+++G+L++ RT+ +
Sbjct: 105 FNKPAGLAVQGGSGVTRNVDDMLEA-WRNKKGEKPRLVHRLDRDTAGVLVVARTRGAAQA 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + K+ YWALV G P++++G I L K DDG R
Sbjct: 164 LTAAFRERTTKKT---------------YWALVTGVPRDREGKISTWLVKEATDDGDRMR 208
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ G + A++ YR++ W+EL P T R HQLRVHC LG PI+GD
Sbjct: 209 VA---KHGEPGADHAVSYYRIIEKAAQNLCWLELEPYTGRTHQLRVHCLH-LGHPILGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + H + ++ P G + + LHL R + +
Sbjct: 265 KY--YDHDKNREFP------------------------GGMQKR---LHLLARHISVPH- 294
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
PDG L A +P HM SWNL+
Sbjct: 295 -------PDG-GRLSVTAPLPPHMVQSWNLLG 318
>gi|349686578|ref|ZP_08897720.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter oboediens 174Bp2]
Length = 325
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 133/260 (51%), Gaps = 29/260 (11%)
Query: 145 VEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNP-------NADE 197
+ QG ++ + +T +V G R + G+ + R IP+ + P + +
Sbjct: 28 LTQGALQKL--CRTGQVRVDGRRATAATRLAPGQ-AVRVPPIPNASRPPPLAVKPLDERQ 84
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+ + R+V YRD ++VLNKP + ++G + + +DAL + P+LVHR+DR
Sbjct: 85 VREINRMVVYRDDHVIVLNKPAGIAVQGGPGITHHIDALLDGLRENPDDPRPRLVHRIDR 144
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLLL+ RT + L F + +++ YWA+V+G P GI
Sbjct: 145 DTSGLLLVARTPGVAAKLAAAFRGRD---------------VHKVYWAVVVGRPSPATGI 189
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I PL+K L G ++A+ +A A++EY VL SW+ L PLT R HQ
Sbjct: 190 IDQPLTK--LGAGAGAISVVAERGDADAVH-ALSEYEVLDAAGRKLSWLALSPLTGRTHQ 246
Query: 378 LRVHCAEALGTPIVGDYKYG 397
LRVHC EALG PI+GD KYG
Sbjct: 247 LRVHC-EALGNPILGDPKYG 265
>gi|346991289|ref|ZP_08859361.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TW15]
Length = 347
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 141/294 (47%), Gaps = 58/294 (19%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
++ V Y+D +L LNKP +P++G +D+L+ A L + Y+E P+LVHRLD+++S
Sbjct: 89 IQSCVIYKDDHVLALNKPHGLPVQGGSGQTRHVDSLSEA-LRFGYDENPRLVHRLDKDTS 147
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSP-----KEKQ 315
G+LLM RT+E+ LT F N K YWALV G P + K
Sbjct: 148 GVLLMARTREAAKGLTAAFRHRNTQKI---------------YWALVAGVPTPYLGEIKT 192
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLE---ASQEAMTEYRVLGPMINGCSWIELRPLT 372
G++ AP G+ E++I S + ++ A T Y L + +W+ + P+T
Sbjct: 193 GLVKAPGHG---KQGEGEKMIAVHPSEVNDTPGAKRAHTLYATLYRVAGRAAWVAMEPVT 249
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
R HQLR H A A+G PI+GD KYG SG+ DG Q
Sbjct: 250 GRTHQLRAHMA-AIGHPIIGDGKYG-----------------GSGQE---NLGDGWGAQL 288
Query: 433 GSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
G ++SK LHLH R L ++ P+ + A +P HMK SW+ +
Sbjct: 289 GGIISKK--LHLHARSLSFEH--------PETRKPITITAPLPDHMKHSWDTLG 332
>gi|407776138|ref|ZP_11123427.1| RluA family pseudouridine synthase [Thalassospira profundimaris
WP0211]
gi|407280854|gb|EKF06421.1| RluA family pseudouridine synthase [Thalassospira profundimaris
WP0211]
Length = 367
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 139/272 (51%), Gaps = 42/272 (15%)
Query: 144 FVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMV-----------------EGRISKRYDT 185
F+ GQ++ ++ K N+ +EPG I +P + V + +R
Sbjct: 37 FLRGGQIRVDGKRAKANQRVEPGQEIRVPPAPVMSGGGTGPWGEDGSGYNPSEVQQRKHA 96
Query: 186 IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
P+ + A E+ LR V + D +L +NKP + ++G + +D + A L D
Sbjct: 97 GPAKSDATEA-ELQALRDSVIFYDELVLAINKPAGLAVQGGTNTNVHVDGMLDA-LKLDS 154
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
E PKLVHRLD+++SG+LL+ R+ + LT F D ++ + YWA
Sbjct: 155 KERPKLVHRLDKDTSGVLLLARSASAAHALTKAFKD---------------KSTRKLYWA 199
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
+V G+P E++G+I APL+K+ G E++++ + G + A + +R L +W
Sbjct: 200 IVTGAPAEREGMIDAPLAKIAGKGG--EKMVIDEKLG----KSAQSVFRQLHRAGRKAAW 253
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ L PLT R HQLRVHC EA+ PI+GD KYG
Sbjct: 254 LALSPLTGRTHQLRVHC-EAIECPILGDGKYG 284
>gi|159042871|ref|YP_001531665.1| ribosomal large subunit pseudouridine synthase C [Dinoroseobacter
shibae DFL 12]
gi|157910631|gb|ABV92064.1| ribosomal large subunit pseudouridine synthase C [Dinoroseobacter
shibae DFL 12]
Length = 348
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 170/365 (46%), Gaps = 64/365 (17%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H +G ++ C G+ V+ G++KP +++T + + +P G I+ R
Sbjct: 28 HLGQGRIEKMC-RKGELRVDGGRVKPATRLQTGQA------VRVPPLPAPGEITAR---- 76
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
P+ +AD + L+ V YRD+ IL LNKP +P++G +D +A A L ++ +
Sbjct: 77 PARARISDADR-EMLQGTVIYRDADILALNKPAGLPVQGGSGQERHIDGMAEA-LQFELD 134
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
E P+LVHRLD+++SG+LLM RT+ S + LT F K YWA
Sbjct: 135 EPPRLVHRLDKDTSGVLLMARTRRSAAALTAAFRARQTRKI---------------YWAA 179
Query: 307 VIGSPKEKQGIIHAPLSKVLLDD--GKTERIILAQNSGLEA---SQEAMTEYRVLGPMIN 361
V G P+ + G + L K G+ E+++ ++A ++ A T+Y VL +
Sbjct: 180 VAGVPQPQLGTVRYALMKAPGHGKRGEGEKMLCIDPRQMDAHPDAKRATTDYAVLSALGR 239
Query: 362 GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYK 421
+W L P+T R HQLR H AE LG PI+GD KYG SG+
Sbjct: 240 RVAWCVLVPITGRTHQLRAHMAE-LGHPIIGDGKYG-----------------GSGQENL 281
Query: 422 LRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
DG Q G +SK LHLH R L + P ++ L A +P HM +
Sbjct: 282 ---GDGWGAQLGGEMSKK--LHLHARHLSLTH--PVTGAQ------LSLTAPLPPHMART 328
Query: 482 WNLMS 486
W +
Sbjct: 329 WEALG 333
>gi|221638143|ref|YP_002524405.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides KD131]
gi|221158924|gb|ACL99903.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides KD131]
Length = 343
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 161/354 (45%), Gaps = 62/354 (17%)
Query: 145 VEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPS-GTLNPNADEI----- 198
V QG ++ + +T +V GAR + EG + R +P P A +
Sbjct: 26 VTQGAVEKM--CRTGQVRVDGARAKASDRVAEG-MEIRVPPLPDPDAPRPQASRVTKSDE 82
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ V YRD+ I+VLNKP +P +G +D L A L + Y E PKLVHRLD+
Sbjct: 83 QMIQDCVIYRDNDIIVLNKPAGLPSQGGSGQGERHVDGLTEA-LKFGYKERPKLVHRLDK 141
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG+L++ RT L+ F N K YWALV G P KQG
Sbjct: 142 DTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWALVAGVPSPKQGS 186
Query: 318 IHAPLSKV--LLDDGKTERIIL---AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
I L K G+ E+++ A+ ++ A T++ L + + C+W+ L P+T
Sbjct: 187 IKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGSRCAWMALSPIT 246
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
R HQLR H AE LG PIVGD KYG SG+ DG Q
Sbjct: 247 GRTHQLRAHMAE-LGHPIVGDGKYG-----------------GSGQE---NLGDGWGAQI 285
Query: 433 GSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
G +S+ LHLH R L ++ P DL+ F A +P HM +W L+
Sbjct: 286 GGEMSRK--LHLHARSLTIEH--------PIKKDLVTFTAPLPGHMAKTWKLLD 329
>gi|190891935|ref|YP_001978477.1| RNA-pseudouridine synthase, ribosomal large subunit C [Rhizobium
etli CIAT 652]
gi|190697214|gb|ACE91299.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli CIAT 652]
Length = 330
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 166/376 (44%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ ++ + I L ++D D L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPLDVDAKL--KSGPIAGKDLKHSSD-FDLLSRMVLHEDEKVIVLNKPPGIAVQGGSGVA 121
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 122 RHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 177
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++ + I L K DG RI G + + A+
Sbjct: 178 ------------YWALVKGVPRKHEDKISTWLVKEATADGDRMRI---AKHGEDGADHAI 222
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 223 SFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 268
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G + K LHLH R + D P+ LR
Sbjct: 269 DDDPNWDFP-------------GGIQKK---LHLHARHI--DIPHPSGGR-------LRV 303
Query: 471 VASMPSHMKISWNLMS 486
A +P HM +WNL+
Sbjct: 304 SAPLPPHMVQTWNLLG 319
>gi|254512315|ref|ZP_05124382.1| ribosomal large subunit pseudouridine synthase C [Rhodobacteraceae
bacterium KLH11]
gi|221536026|gb|EEE39014.1| ribosomal large subunit pseudouridine synthase C [Rhodobacteraceae
bacterium KLH11]
Length = 347
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 171/367 (46%), Gaps = 69/367 (18%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVME--PGARIFLPVSMVEGRISKRYD 184
H ++G ++ C G+ V+ G++K +++ +V+ P ++V R+S
Sbjct: 28 HVSQGRIEKMC-RKGELRVDGGRVKASTRLEVGQVVRVPPLPDADHKPAVVRHRVS---- 82
Query: 185 TIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYD 244
+AD ++ V Y+D +L LNKP +P++G +D+L+ A L +
Sbjct: 83 ---------DADA-KMIQSCVIYKDDQVLALNKPHGLPVQGGSGQTRHVDSLSEA-LRFG 131
Query: 245 YNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYW 304
Y+E P+LVHRLD+++SG+LLM RT+++ LT F N K YW
Sbjct: 132 YDENPRLVHRLDKDTSGVLLMARTRDAAKALTAAFRHRNTRKI---------------YW 176
Query: 305 ALVIGSPKEKQGIIHAPLSKVL--LDDGKTERIILAQNSGLE---ASQEAMTEYRVLGPM 359
ALV G P G I L K G+ E++I S + ++ A T Y L +
Sbjct: 177 ALVAGVPTPYLGEIKTGLVKASGHGKQGEGEKMIALHPSEVNDTPGAKRAHTLYATLYRV 236
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
+W+ + P+T R HQLR H A A+G PI+GD KYG SG+
Sbjct: 237 AGRAAWVAMEPVTGRTHQLRAHMA-AIGHPIIGDGKYG-----------------GSGQE 278
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMK 479
DG Q G ++SK LHLH R L ++ ++ KP + A +P HMK
Sbjct: 279 ---NLGDGWGAQLGGIISKK--LHLHARSLSFEH---PITRKP-----VSLAAPLPDHMK 325
Query: 480 ISWNLMS 486
SW+ +
Sbjct: 326 HSWDTLG 332
>gi|77462289|ref|YP_351793.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides 2.4.1]
gi|332560170|ref|ZP_08414492.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides WS8N]
gi|77386707|gb|ABA77892.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides 2.4.1]
gi|332277882|gb|EGJ23197.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides WS8N]
Length = 346
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 161/354 (45%), Gaps = 62/354 (17%)
Query: 145 VEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPS-GTLNPNADEI----- 198
V QG ++ + +T +V GAR + EG + R +P P A +
Sbjct: 29 VTQGAVEKM--CRTGQVRVDGARAKASDRVAEG-MEIRVPPLPDPDAPRPQASRVTKSDE 85
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ V YRD+ I+VLNKP +P +G +D L A L + Y E PKLVHRLD+
Sbjct: 86 QMIQDCVIYRDNDIIVLNKPAGLPSQGGSGQGERHVDGLTEA-LKFGYKERPKLVHRLDK 144
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG+L++ RT L+ F N K YWALV G P KQG
Sbjct: 145 DTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWALVAGVPSPKQGS 189
Query: 318 IHAPLSKV--LLDDGKTERIIL---AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
I L K G+ E+++ A+ ++ A T++ L + + C+W+ L P+T
Sbjct: 190 IKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGSRCAWMALSPIT 249
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
R HQLR H AE LG PIVGD KYG SG+ DG Q
Sbjct: 250 GRTHQLRAHMAE-LGHPIVGDGKYG-----------------GSGQE---NLGDGWGAQI 288
Query: 433 GSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
G +S+ LHLH R L ++ P DL+ F A +P HM +W L+
Sbjct: 289 GGEMSRK--LHLHARSLTIEH--------PIKKDLVTFTAPLPGHMAKTWKLLD 332
>gi|149203330|ref|ZP_01880300.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
gi|149143163|gb|EDM31202.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
Length = 347
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 171/384 (44%), Gaps = 82/384 (21%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQME-CANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
WV+ F V G VQ+E G+ V+ G++KP +++ + +
Sbjct: 21 WVRRLFPHV-----------GQVQIEKMCRKGELRVDGGRVKPATRLEVGQSV------- 62
Query: 170 LPVSMVEGRISKRYDTI--PSGTL-NPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGH 226
RI DT P+G L + + ++ V YRD I+ LNKPP +P++G
Sbjct: 63 --------RIPPLPDTDERPTGALARISPADAKMIQSCVIYRDDHIIALNKPPGLPVQGG 114
Query: 227 LPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSK 286
+D LA A L + + P+LVHRLD+++SG+LL+ RT+E+ LT F N K
Sbjct: 115 SKQLRHVDGLAEA-LRFGAEDKPRLVHRLDKDTSGVLLLARTREAAKGLTAAFRHRNTRK 173
Query: 287 SLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDD--GKTERIILAQNSGLE 344
YWA V G P + G I L K G+ E+++ ++
Sbjct: 174 I---------------YWAAVAGVPTPRMGTIRFGLVKAPGHGAKGEGEKMLCLHPRDID 218
Query: 345 AS---QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVH 401
A+ + A T+Y V+ +W+ L P+T R HQLR H AE +G PIVGD KYG
Sbjct: 219 ATPGAKPATTDYAVIEAAGARTAWMALIPVTGRTHQLRAHMAE-IGHPIVGDGKYG---- 273
Query: 402 RRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK 461
SG+ DG Q G +S+ LHLH R LK ++
Sbjct: 274 -------------GSGQE---NLGDGWGAQLGGDVSRK--LHLHARSLKIEH-------- 307
Query: 462 PDGPDLLRFVASMPSHMKISWNLM 485
P +L A +P HM +W+L
Sbjct: 308 PVSRAILHITAPLPEHMARTWDLF 331
>gi|94497617|ref|ZP_01304185.1| pseudouridylate synthase, partial [Sphingomonas sp. SKA58]
gi|94422834|gb|EAT07867.1| pseudouridylate synthase [Sphingomonas sp. SKA58]
Length = 394
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 136/286 (47%), Gaps = 63/286 (22%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
DEI Y + +V +RD+ +V+NKPP + +G +D L A L +D PKLVHRL
Sbjct: 171 DEISYAQDMVIHRDAQAIVINKPPGLATQGGTKTDEHVDKLLDALL-FDAESRPKLVHRL 229
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ RT + + FS S++ K YWALV+G P +
Sbjct: 230 DKDTSGALLLARTSRAAAHFAKAFS----SRTARKV-----------YWALVMGVPSIED 274
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I P++K G E++ + + GL A + YRV+ N +WIEL+P T R
Sbjct: 275 GMIELPIAKQPGTGG--EKMHVDEEEGLPAR----SRYRVIERAGNRAAWIELQPYTGRT 328
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A A+G PIVGD KYG G D
Sbjct: 329 HQLRVHMA-AIGHPIVGDGKYG-----------------------------GKDAFLSGT 358
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
+S+ +HLH R ++ D+ PDG + A +P+H S
Sbjct: 359 ISR--KMHLHARRIRVDH--------PDG-GRVDMTAELPTHFANS 393
>gi|392382334|ref|YP_005031531.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356877299|emb|CCC98114.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 229
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 111/197 (56%), Gaps = 31/197 (15%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V YRD +L+++KP +P+ G + DAL + + + P L HRLDR++S
Sbjct: 10 VLYRDGLMLIIDKPAGLPVHAGPGGGPNLERHFDAL-----RFGFPKPPGLAHRLDRDTS 64
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR +++ L LF D K+ YWA+V G+P E+QG I
Sbjct: 65 GCLILGRHPKALRKLGKLFQDGKVDKT---------------YWAVVAGTPPEEQGRIEL 109
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL KV G RI++A + Q A+T+YRVLG NG +W+EL+P T R HQ+RV
Sbjct: 110 PLKKVTNKSGGW-RIVVADDG-----QSAITDYRVLG-RGNGTTWLELKPHTGRTHQIRV 162
Query: 381 HCAEALGTPIVGDYKYG 397
HCA ALG P++GD +YG
Sbjct: 163 HCATALGCPLLGDPQYG 179
>gi|429207722|ref|ZP_19198978.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter sp.
AKP1]
gi|428189115|gb|EKX57671.1| Ribosomal large subunit pseudouridine synthase C [Rhodobacter sp.
AKP1]
Length = 349
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 161/354 (45%), Gaps = 62/354 (17%)
Query: 145 VEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPS-GTLNPNADEI----- 198
V QG ++ + +T +V GAR + EG + R +P P A +
Sbjct: 32 VTQGAVEKM--CRTGQVRVDGARAKASDRVAEG-MEIRVPPLPDPDAPRPQASRVTKSDE 88
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ V YRD+ I+VLNKP +P +G +D L A L + Y E PKLVHRLD+
Sbjct: 89 QMIQDCVIYRDNDIIVLNKPAGLPSQGGSGQGERHVDGLTEA-LKFGYKERPKLVHRLDK 147
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG+L++ RT L+ F N K YWALV G P KQG
Sbjct: 148 DTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWALVAGVPSPKQGS 192
Query: 318 IHAPLSKV--LLDDGKTERIIL---AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
I L K G+ E+++ A+ ++ A T++ L + + C+W+ L P+T
Sbjct: 193 IKYALMKAPGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGSRCAWMALSPIT 252
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
R HQLR H AE LG PIVGD KYG SG+ DG Q
Sbjct: 253 GRTHQLRAHMAE-LGHPIVGDGKYG-----------------GSGQE---NLGDGWGAQI 291
Query: 433 GSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
G +S+ LHLH R L ++ P DL+ F A +P HM +W L+
Sbjct: 292 GGEMSRK--LHLHARSLTIEH--------PIKKDLVTFTAPLPGHMAKTWKLLD 335
>gi|417104037|ref|ZP_11961267.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli CNPAF512]
gi|327191042|gb|EGE58095.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli CNPAF512]
Length = 330
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 166/376 (44%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ ++ + I L ++D + L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPLDVDAKL--KSGPIAGKDLKHSSD-FELLSRMVLHEDDKVIVLNKPPGIAVQGGSGVA 121
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 122 RHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 177
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++ + I L K DG RI G + + A+
Sbjct: 178 ------------YWALVKGVPRKHEDKISTWLVKEATADGDRMRI---AKHGEDGADHAI 222
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL +WIE+ P T R HQLRVH +G PI+GD KY
Sbjct: 223 SFYRVLETAAQNLAWIEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 268
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G + K LHLH R + D P+ LR
Sbjct: 269 DDDPNWDFP-------------GGIQKK---LHLHARHI--DIPHPSGGR-------LRV 303
Query: 471 VASMPSHMKISWNLMS 486
A +P HM +WNL+
Sbjct: 304 SAPLPPHMVQTWNLLG 319
>gi|116252313|ref|YP_768151.1| ribosomal large subunit pseudouridine synthase C [Rhizobium
leguminosarum bv. viciae 3841]
gi|115256961|emb|CAK08055.1| putative ribosomal large subunit pseudouridine synthase C
[Rhizobium leguminosarum bv. viciae 3841]
Length = 330
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 166/376 (44%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ ++ + I L + D + L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPMDVDAKL--KSGPIAGKDLKHSTD-FELLSRMVLHEDEKVIVLNKPPGLAVQGGSGVA 121
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 122 RHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 177
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++ + I L K DG RI G + + A+
Sbjct: 178 ------------YWALVKGVPRKHEDKISTWLVKEPTADGDRMRI---AKHGEDGADHAI 222
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 223 SFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 268
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G V K LHLH R + D P+ LR
Sbjct: 269 DDDPNWDFP-------------GGVQKK---LHLHARHI--DIPHPSGGR-------LRV 303
Query: 471 VASMPSHMKISWNLMS 486
A +PSHM +WNL+
Sbjct: 304 SAPLPSHMVQTWNLLG 319
>gi|89070524|ref|ZP_01157813.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
granulosus HTCC2516]
gi|89043831|gb|EAR50029.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
granulosus HTCC2516]
Length = 348
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 142/292 (48%), Gaps = 44/292 (15%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W++ F ++ I+ KG ++++ ++K+N + PG ++ +
Sbjct: 21 WLRARFPQLTQGRIEKMCRKGELRIDGG----------------RVKSNTRIAPGQQVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P G + P+G P+A + + +R V YRD ++VLNKPP +P +G
Sbjct: 65 PPLPPPGEVR------PAGRDEPSAQDAEMMRAAVLYRDDHLIVLNKPPGLPTQGGSRQT 118
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D L +AAL++ E P+LVHRLD+++SG+LL+ RT+ + LT D +S+ K
Sbjct: 119 RHVDGL-SAALTFGLEEKPRLVHRLDKDTSGILLLARTRAAAKGLT----DAFRSRETRK 173
Query: 291 AWNDACEAMYQRYWALVIGSPKE-----KQGIIHAPLSKVLLDDGKTERIILAQNSGLEA 345
YWA V G P K G++ P ++ K I +
Sbjct: 174 I-----------YWAAVAGVPHPRMGTVKYGLVKQPGHGARGENEKMRCIHPDEVLRTPD 222
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
++ A+T+Y V+ + +W+ L P+T R HQLR H AE LG PI GD KYG
Sbjct: 223 AKRAVTDYAVIETLARRAAWVALVPVTGRTHQLRAHMAE-LGHPIAGDGKYG 273
>gi|296114939|ref|ZP_06833585.1| pseudouridine synthase, RluA family protein [Gluconacetobacter
hansenii ATCC 23769]
gi|295978497|gb|EFG85229.1| pseudouridine synthase, RluA family protein [Gluconacetobacter
hansenii ATCC 23769]
Length = 325
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 134/271 (49%), Gaps = 32/271 (11%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H +G +Q C G V+ G ++ T+ + PG + +P I +
Sbjct: 27 HLTQGALQKLC-RTGQIRVDGG------RVTTSTRLAPGQAVRVPP------IPQASRPA 73
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
P + ++ +R++V Y D ++VLNKP + ++G + + +D L +
Sbjct: 74 PVTHRTLDDRQVREIRKMVIYSDDQVIVLNKPAGIAVQGGPGITHHIDGLLDGLREQPDD 133
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
P+LVHR+DR++SGLLL+ RT + L F +S+ + K YWA+
Sbjct: 134 PRPRLVHRIDRDTSGLLLLARTPGVAAKLAASF----RSRDVRKV-----------YWAV 178
Query: 307 VIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
+G P GI+ PL++ L G +++A +A A++EY VL SW+
Sbjct: 179 TVGRPTPASGIVDQPLTR--LGAGAGAIMVVAGRRDKDAVH-ALSEYEVLDAAGRKLSWL 235
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
L PLT R HQLRVHC EALGTPI+GD KYG
Sbjct: 236 ALSPLTGRTHQLRVHC-EALGTPILGDPKYG 265
>gi|56695430|ref|YP_165778.1| ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi
DSS-3]
gi|56677167|gb|AAV93833.1| ribosomal large subunit pseudouridine synthase C [Ruegeria pomeroyi
DSS-3]
Length = 347
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/365 (30%), Positives = 169/365 (46%), Gaps = 65/365 (17%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H +G ++ C G+ V+ + KP + +E G ++ +P G +R + +
Sbjct: 28 HVGQGRIEKMC-RKGELRVDGARAKPATR------LEVGQQVRIPPLPAPG---ERPEPV 77
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
S + +A +R V +RD I+VLNKP + ++G +D L+ A L + +
Sbjct: 78 KSRVSDSDAK---LIRACVLHRDDDIIVLNKPAGLAVQGGSGQTRHVDGLSEA-LRFGND 133
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
E P+LVHRLD+++SG+L++ RT+E+ + LT F N K YWAL
Sbjct: 134 ENPRLVHRLDKDTSGVLVLARTREAAARLTAAFRHRNTRKI---------------YWAL 178
Query: 307 VIGSPKEKQGIIHAPLSKVLLDD--GKTERIILAQNSGLEAS---QEAMTEYRVLGPMIN 361
V G P G I L K G+ E++ + S L+A+ + A T Y L +
Sbjct: 179 VAGVPTPYLGEIKTGLVKAGGHGARGEGEKMNVVHLSELDATPGAKRAHTYYATLYRVAG 238
Query: 362 GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYK 421
SW+ + P+T R HQLR H A +G PI+GD KYG SG+
Sbjct: 239 RASWVAMEPVTGRTHQLRAHMA-GIGHPIIGDGKYG-----------------GSGQE-- 278
Query: 422 LRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
DG Q G ++SK LHLH R L ++ P+ K + F A +P HM+ S
Sbjct: 279 -NLGDGWGAQLGGIISKK--LHLHARSLSFEH--PSTRKK------VTFTAPLPEHMRES 327
Query: 482 WNLMS 486
W+
Sbjct: 328 WDTFG 332
>gi|424887740|ref|ZP_18311343.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393173289|gb|EJC73333.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 330
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 167/376 (44%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ ++ + I L ++D + L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPLDVDAKL--KSGPIAGKDLKHSSD-FELLSRMVLHEDDKVIVLNKPPGIAVQGGSGVS 121
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 122 RHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 177
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++ + I L K DG RI G + + A+
Sbjct: 178 ------------YWALVKGVPRKHEDKISTWLVKEPTADGDRMRI---AKHGEDGADHAI 222
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 223 SFYRVVETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 268
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G V K LHLH R + D P+ LR
Sbjct: 269 DDDPNWDFP-------------GGVQKK---LHLHARHI--DIPHPSGGR-------LRV 303
Query: 471 VASMPSHMKISWNLMS 486
A +PSHM +WNL+
Sbjct: 304 SAPLPSHMVQTWNLLG 319
>gi|254486362|ref|ZP_05099567.1| 23S rRNA pseudouridylate synthase [Roseobacter sp. GAI101]
gi|214043231|gb|EEB83869.1| 23S rRNA pseudouridylate synthase [Roseobacter sp. GAI101]
Length = 349
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 134/290 (46%), Gaps = 53/290 (18%)
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNS-MDALAAAALSYDYNEGPKLVHRLDRE 258
++R V YRD I+ LNKPP +P++G + +DALA A L +D +E P+LVHRLD++
Sbjct: 88 FIRSCVIYRDDYIIALNKPPGLPVQGGSGQSDRHVDALADA-LMFDLDEKPRLVHRLDKD 146
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+L+M RT+ + LT F K YWA V G P K G I
Sbjct: 147 TSGVLIMARTRSIAADLTSSFRHRQTRKI---------------YWAAVAGVPHPKNGTI 191
Query: 319 HAPLSKVLLDD--GKTERIILAQNSGL---EASQEAMTEYRVLGPMINGCSWIELRPLTC 373
L K G+ E++ + E ++ A T+Y L W+ L P+T
Sbjct: 192 KFGLVKAFGHGARGEGEKMYCVHPKDMDTTEGAKRATTDYATLAQAGTRTCWVALIPVTG 251
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLR H AE +G PIVGD KYG SG+ DG Q G
Sbjct: 252 RTHQLRAHMAE-IGHPIVGDGKYG-----------------GSGQE---NMGDGWGAQLG 290
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWN 483
+SK LHLH R L ++ P L +A MP HM +W+
Sbjct: 291 GDISKK--LHLHARSLTLEH--------PVTKATLNLIAPMPDHMVRTWD 330
>gi|159184771|ref|NP_354476.2| ribosomal large subunit pseudouridine synthase C [Agrobacterium
fabrum str. C58]
gi|159140059|gb|AAK87261.2| ribosomal large subunit pseudouridine synthase C [Agrobacterium
fabrum str. C58]
Length = 329
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 155/332 (46%), Gaps = 61/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++KT+ ++PG + +P V+ + + I S L +AD + L R++ + D +LV
Sbjct: 49 RVKTDARVQPGQMVRVPP--VDSDMKTKTGPIGSKDLKHSADG-ELLARMLLHEDDKVLV 105
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V+ +D L A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 106 FNKPAGIAVQGGSGVNRHIDGLLEAWTS-PKGEKPRLVHRLDRDTSGVLVVARTRGAAQK 164
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ Q I L K DG R
Sbjct: 165 LTAAFRERDTKKT---------------YWALVRGVPRKHQDKISTWLVKEQTPDGDRMR 209
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G E + A++ YRV+ +W+E+ P T R HQLRVH +G PI+GD
Sbjct: 210 IA---KHGEEGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDP 265
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + P D P G VQK LHLH R +
Sbjct: 266 KY-------YIDDPNWDF------------PGG--VQK--------RLHLHARHID---- 292
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G LR A +P HM +WNL+
Sbjct: 293 IP----HPNG-GRLRVSAPLPPHMVQTWNLLG 319
>gi|347761705|ref|YP_004869266.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter xylinus NBRC 3288]
gi|347580675|dbj|BAK84896.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Gluconacetobacter xylinus NBRC 3288]
Length = 325
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 132/279 (47%), Gaps = 48/279 (17%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDT 185
H +G +Q C GQ++ R+ +EPG + +P
Sbjct: 27 HLTQGALQKLC--------RTGQVRVDGRRATAATRLEPGQAVRVP-------------P 65
Query: 186 IPSGTLNP-------NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAA 238
IP+ P + ++ + ++V YRD ++VLNKP + ++G + + +DAL
Sbjct: 66 IPNANRPPPLAVRPLDERQVREINKMVIYRDDHVIVLNKPAGIAVQGGPGITHHIDALLD 125
Query: 239 AALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEA 298
+ P+LVHR+DR++SGLLL+ RT + L F +
Sbjct: 126 GLRENPDDPRPRLVHRIDRDTSGLLLVARTPGVAAKLAAAFRGRD--------------- 170
Query: 299 MYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGP 358
+++ YWA+V+G P GII PL+K+ G I + G + A++EY VL
Sbjct: 171 VHKVYWAVVVGRPSPATGIIDQPLTKLGAGAGA---ISVVAERGDPDAVHALSEYEVLDA 227
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
SW+ L PLT R HQLRVHC EALG PI+GD KYG
Sbjct: 228 AARKMSWLALSPLTGRTHQLRVHC-EALGNPILGDPKYG 265
>gi|424895151|ref|ZP_18318725.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393179378|gb|EJC79417.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 330
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 167/376 (44%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ ++ + I L ++D + L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPLDVDAKL--KSGPIAGKDLKHSSD-FELLSRMVLHEDDKVIVLNKPPGIAVQGGSGVA 121
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 122 RHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 177
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++ + I L K DG RI G + + A+
Sbjct: 178 ------------YWALVKGVPRKHEDKISTWLVKEPTADGDRMRI---AKHGEDGADHAI 222
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 223 SFYRVVETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 268
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G V K LHLH R + D P+ LR
Sbjct: 269 DDDPNWDFP-------------GGVQKK---LHLHARHI--DIPHPSGGR-------LRV 303
Query: 471 VASMPSHMKISWNLMS 486
A +PSHM +WNL+
Sbjct: 304 SAPLPSHMVQTWNLLG 319
>gi|384263153|ref|YP_005418341.1| Pseudouridine synthase [Rhodospirillum photometricum DSM 122]
gi|378404255|emb|CCG09371.1| Pseudouridine synthase [Rhodospirillum photometricum DSM 122]
Length = 372
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 24/201 (11%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
EI L+ + + D ++VLNK P + ++G + +DA+ A E P+LVHRLD
Sbjct: 109 EIRALQAAILHSDDHLIVLNKAPGLAVQGGTGTDHHLDAMLDALAGG--GERPRLVHRLD 166
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SG+L++ RT+ + LT F + K YWALV+G P +QG
Sbjct: 167 KDTSGVLVLARTQAAARFLTAAFRARDTLKV---------------YWALVVGRPPLEQG 211
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+ L+K G+ ER+++ + G + A+T++RV+ + C+W++LRP T R H
Sbjct: 212 TMRGALAKEA--RGRGERMVVNEEDG----RPAITDFRVIDQAVGACAWLDLRPRTGRTH 265
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVHC E +G PI+GD KYG
Sbjct: 266 QLRVHCLE-MGIPILGDGKYG 285
>gi|335037208|ref|ZP_08530519.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
ATCC 31749]
gi|333791364|gb|EGL62750.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
ATCC 31749]
Length = 329
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 156/332 (46%), Gaps = 61/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++KT+ ++PG + +P V+ + + I S L +AD + L R++ + D +LV
Sbjct: 49 RVKTDARVQPGQMVRVPP--VDSDMKTKTGPIGSKDLKHSADG-ELLARMLLHEDDKVLV 105
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V+ +D L A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 106 FNKPAGIAVQGGSGVNRHIDGLLEAWTS-PKGEKPRLVHRLDRDTSGVLVVARTRGAAQK 164
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ Q I L K DG R
Sbjct: 165 LTAAFRERDTKKT---------------YWALVRGVPRKHQDKISTWLVKEQTPDGDRMR 209
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G E + A++ YRV+ +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 210 I---AKHGEEGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVH-ALYMGHPIIGDP 265
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + P D P G VQK LHLH R +
Sbjct: 266 KY-------YIDDPNWDF------------PGG--VQK--------RLHLHARHID---- 292
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G LR A +P HM +WNL+
Sbjct: 293 IP----HPNG-GRLRVSAPLPPHMVQTWNLLG 319
>gi|334343948|ref|YP_004552500.1| RluA family pseudouridine synthase [Sphingobium chlorophenolicum
L-1]
gi|334100570|gb|AEG47994.1| pseudouridine synthase, RluA family [Sphingobium chlorophenolicum
L-1]
Length = 432
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 115/202 (56%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+I + + +V +RD+ +V+NKPP + +G + +D L A L Y+ ++ PKLVHRL
Sbjct: 150 DQIAFAQGIVIHRDAQAIVINKPPGLATQGGTKTDDHVDGLLDA-LEYELDQRPKLVHRL 208
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ RT S + FS S++ K YWA+V+G P +
Sbjct: 209 DKDTSGALLIARTARSAAFFAKAFS----SRTARKV-----------YWAIVMGVPSIED 253
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G++ P++K G E++ + + GL + + YRV+ N +W+EL+P T R
Sbjct: 254 GMVELPIAKQPGTGG--EKMHVDEEEGL----PSRSRYRVIERAGNRAAWVELQPYTGRT 307
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G PIVGD KYG
Sbjct: 308 HQLRVHMA-AIGHPIVGDGKYG 328
>gi|294011526|ref|YP_003544986.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
japonicum UT26S]
gi|292674856|dbj|BAI96374.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
japonicum UT26S]
Length = 436
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 115/202 (56%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D++ + + LV +RD+ +V+NKPP + +G + +D L A L +D ++ PKLVHRL
Sbjct: 154 DQMAFAQGLVIHRDAQAIVINKPPGLATQGGTKTDDHVDGLLDA-LEFDLDQRPKLVHRL 212
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ RT S + FS S++ K YWA+V+G P +
Sbjct: 213 DKDTSGALLIARTARSAAYFAKAFS----SRTARKV-----------YWAIVMGVPSIED 257
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I P++K G E++ + + GL + + YRV+ N +W+EL+P T R
Sbjct: 258 GMIELPIAKQPGTGG--EKMHVDEEEGL----PSRSRYRVIERAGNRAAWVELQPYTGRT 311
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G PIVGD KYG
Sbjct: 312 HQLRVHMA-AIGHPIVGDGKYG 332
>gi|260432477|ref|ZP_05786448.1| ribosomal large subunit pseudouridine synthase C [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416305|gb|EEX09564.1| ribosomal large subunit pseudouridine synthase C [Silicibacter
lacuscaerulensis ITI-1157]
Length = 347
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 136/292 (46%), Gaps = 54/292 (18%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
++ V YRD +L LNKP +P++G +D LA A L + Y+E P+LVHRLD+++S
Sbjct: 89 IQSCVIYRDDHVLALNKPHGLPVQGGSGQARHVDGLAEA-LRFGYDENPRLVHRLDKDTS 147
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE-----KQ 315
G+LLM RT+E+ LT F N K YWALV G P K
Sbjct: 148 GVLLMARTREAAKGLTAAFRHRNTRKI---------------YWALVAGVPTPYLGEIKT 192
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G++ AP + K + L + ++ A T Y L + + SW+ + P+T R
Sbjct: 193 GLVKAPGHGKQGEGEKMIAVHLNEIDSTPGAKRAHTLYATLFRVASRASWVAMEPVTGRT 252
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLR H A A+G PI+GD KYG SG+ DG Q G V
Sbjct: 253 HQLRAHMA-AIGHPIIGDGKYG-----------------GSGQE---NLGDGWGAQLGGV 291
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSK-PDGPDLLRFVASMPSHMKISWNLMS 486
+SK LHLH R T S K P + A +P HMK SW+ +
Sbjct: 292 ISKK--LHLHAR---------TASFKHPMTGKQVTINAPLPPHMKDSWDTLG 332
>gi|390169265|ref|ZP_10221206.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
indicum B90A]
gi|389588128|gb|EIM66182.1| ribosomal large subunit pseudouridine synthase C [Sphingobium
indicum B90A]
Length = 436
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 115/202 (56%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D++ + + LV +RD+ +V+NKPP + +G + +D L A L +D ++ PKLVHRL
Sbjct: 154 DQMAFAQGLVIHRDAQAIVINKPPGLATQGGTKTDDHVDGLLDA-LEFDLDQRPKLVHRL 212
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ RT S + FS S++ K YWA+V+G P +
Sbjct: 213 DKDTSGALLIARTARSAAYFAKAFS----SRTARKV-----------YWAIVMGVPSIED 257
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I P++K G E++ + + GL + + YRV+ N +W+EL+P T R
Sbjct: 258 GMIELPIAKQPGTGG--EKMHVDEEEGL----PSRSRYRVIERAGNRAAWVELQPYTGRT 311
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G PIVGD KYG
Sbjct: 312 HQLRVHMA-AIGHPIVGDGKYG 332
>gi|241204807|ref|YP_002975903.1| RluA family pseudouridine synthase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858697|gb|ACS56364.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 330
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 166/376 (44%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ ++ + I L ++D L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPMDVDAKL--KSGPIAGKDLKHSSD-FQLLSRMVLHEDDKVIVLNKPPGLAVQGGSGVA 121
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 122 RHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 177
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++ + I L K DG RI G + + A+
Sbjct: 178 ------------YWALVKGVPRKHEDKISTWLVKEPTADGDRMRI---AKHGEDGADHAI 222
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 223 SFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 268
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G V K LHLH R + D P+ LR
Sbjct: 269 DDDPNWDFP-------------GGVQKK---LHLHARHI--DIPHPSGGR-------LRI 303
Query: 471 VASMPSHMKISWNLMS 486
A +P+HM +WNL+
Sbjct: 304 SAPLPAHMVQTWNLLG 319
>gi|103487583|ref|YP_617144.1| pseudouridine synthase RluD [Sphingopyxis alaskensis RB2256]
gi|98977660|gb|ABF53811.1| ribosomal large subunit pseudouridine synthase C [Sphingopyxis
alaskensis RB2256]
Length = 405
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/334 (31%), Positives = 155/334 (46%), Gaps = 71/334 (21%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNAD-EIDYLRRLVKYRDSAI 212
RK ++ + G R+ +PV VE + P+ P + ++ ++ +RD++
Sbjct: 52 RKADVSDRIAVGQRLVMPVPPVEA------EARPARKDRPLTEADVALAESMLIHRDASA 105
Query: 213 LVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESV 272
+VLNK P + +G + +D L A L YD PKLVHRLD+++SG LL+ RT +
Sbjct: 106 IVLNKLPGLATQGGTKTEHHVDGLLDA-LKYDAPVRPKLVHRLDKDTSGALLIARTPRAA 164
Query: 273 SLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKT 332
+ FS+ + K+ YWA+V+G P QG I PL+K G+
Sbjct: 165 AWFAKSFSNRSAKKT---------------YWAIVVGVPDIAQGEIDLPLAKQPGSGGEK 209
Query: 333 ERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVG 392
+ +SGL + T YRV+ N +W+EL+PLT R HQLRVH A A+G PIVG
Sbjct: 210 MHV---HDSGLASK----TRYRVIDRAGNSAAWVELQPLTGRTHQLRVHMA-AIGHPIVG 261
Query: 393 DYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSD 452
D KYG GK L G++ K LHLH R L+ D
Sbjct: 262 DGKYG-------------------GKGAFL---------TGTISRK---LHLHSRRLRID 290
Query: 453 NLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ PDG ++ A +P H S + +
Sbjct: 291 H--------PDG-GVIDVSADVPDHFAASLDALG 315
>gi|325292801|ref|YP_004278665.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
H13-3]
gi|418406957|ref|ZP_12980276.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens 5A]
gi|325060654|gb|ADY64345.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium sp.
H13-3]
gi|358007450|gb|EHJ99773.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens 5A]
Length = 329
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 155/332 (46%), Gaps = 61/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++KT+ ++PG + +P V+ + + I S L +AD + L R++ + D +LV
Sbjct: 49 RVKTDARVQPGQMVRVPP--VDSDLKVKSGPIGSRDLKHSADG-ELLARMLLHEDDKVLV 105
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V+ +D L A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 106 FNKPAGIAVQGGSGVNRHIDGLLEAWTS-PKGEKPRLVHRLDRDTSGVLVVARTRGAAQK 164
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ Q I L K DG R
Sbjct: 165 LTAAFRERDTKKT---------------YWALVRGVPRKHQDKISTWLVKEQTPDGDRMR 209
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G E + A++ YRV+ +W+E+ P T R HQLRVH +G PI+GD
Sbjct: 210 I---AKHGEEGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDP 265
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + P D P G VQK LHLH R +
Sbjct: 266 KY-------YIDDPNWDF------------PGG--VQK--------RLHLHARHID---- 292
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G LR A +P HM +WNL+
Sbjct: 293 IP----HPNG-GRLRVSAPLPPHMVQTWNLLG 319
>gi|83854943|ref|ZP_00948473.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
NAS-14.1]
gi|83941466|ref|ZP_00953928.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
EE-36]
gi|83842786|gb|EAP81953.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
NAS-14.1]
gi|83847286|gb|EAP85161.1| ribosomal large subunit pseudouridine synthase C [Sulfitobacter sp.
EE-36]
Length = 349
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 112/362 (30%), Positives = 162/362 (44%), Gaps = 66/362 (18%)
Query: 128 FNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIP 187
+GL++ C GD V+ G ++K + +E G + +P E + P
Sbjct: 29 IGQGLIEKMC-RKGDIRVDGG------RVKASTRLEVGQTVRIPPLPDE-----KAPPPP 76
Query: 188 SGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNS-MDALAAAALSYDYN 246
T AD ++R V YRD I+ LNKPP +P++G + +DALA A L ++ +
Sbjct: 77 KRTRISEAD-TKFIRSCVIYRDDHIIALNKPPGLPVQGGSGQSDRHVDALADA-LMFELD 134
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
E P+LVHRLD+++SG+L+M RT+ + LT F K YWA
Sbjct: 135 EKPRLVHRLDKDTSGVLIMARTRSIAAALTASFRHRETRKI---------------YWAA 179
Query: 307 VIGSPKEKQGIIHAPLSKVLLDD--GKTERIILAQNSGLEASQ---EAMTEYRVLGPMIN 361
V G P + G I L K G+ E++ +E ++ A T+Y L
Sbjct: 180 VAGVPHPRNGTIKFGLVKAFGHGARGEGEKMYCVHPKDMETTEGAKRATTDYATLAQAGK 239
Query: 362 GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYK 421
W+ L P+T R HQLR H AE +G PIVGD KYG SG+
Sbjct: 240 RTCWMALIPVTGRTHQLRAHMAE-IGHPIVGDGKYG-----------------GSGQE-- 279
Query: 422 LRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
DG Q G +SK LHLH R L ++ P ++ L A +P HM +
Sbjct: 280 -NMGDGWGAQLGGDISKK--LHLHARSLTLEH--PVTKAR------LNLTAPLPDHMART 328
Query: 482 WN 483
W+
Sbjct: 329 WD 330
>gi|121602476|ref|YP_989029.1| RluA family pseudouridine synthase [Bartonella bacilliformis KC583]
gi|421760833|ref|ZP_16197646.1| RluA family pseudouridine synthase [Bartonella bacilliformis INS]
gi|120614653|gb|ABM45254.1| pseudouridine synthase, RluA family [Bartonella bacilliformis
KC583]
gi|411174149|gb|EKS44183.1| RluA family pseudouridine synthase [Bartonella bacilliformis INS]
Length = 327
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 157/332 (47%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K N + G I +P +E SKR +I S ++ D+ D L++++ Y D I V
Sbjct: 49 RVKANMRLVTGQSIRVPSFFIE---SKRNISITSKVIS-QQDDGDLLKKMLLYEDPKIFV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G + +D + A + E P+LVHRLDRE+SGLL++ R++ +
Sbjct: 105 FNKPAGLAVQGGSGLTRHVDGMLEAWRNKK-GEKPRLVHRLDRETSGLLVVARSRSAAQA 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F M + YWALV G P++KQ I ++K G R
Sbjct: 164 LTAAFR---------------TREMKKIYWALVRGVPRKKQEKISTWMAKETTAQGDKMR 208
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ ++ L+A+ A++ YR+L SW+E+ P T R HQLRVH A +G PI+GD
Sbjct: 209 V--CEHGELDANH-AVSYYRILDTRARALSWLEMEPYTGRTHQLRVH-ASHIGHPIIGDS 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY +F W+ P G+ + LHLH R ++ +
Sbjct: 265 KY-FFSDSNWEL------------------PGGMQNR----------LHLHARRIRIPH- 294
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P G +L A +P HM S+NL++
Sbjct: 295 -------PSG-GILDITAPLPPHMVQSFNLLA 318
>gi|209549478|ref|YP_002281395.1| pseudouridine synthase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424913830|ref|ZP_18337194.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|209535234|gb|ACI55169.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|392850006|gb|EJB02527.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 329
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 166/376 (44%), Gaps = 78/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ +K+ I L ++D + L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPLDVD---AKKSGPIAGKDLKHSSD-FELLSRMVLHEDDKVIVLNKPPGIAVQGGSGVA 120
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 121 RHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 176
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++ + I L K DG RI G + + A+
Sbjct: 177 ------------YWALVKGVPRKHEDKISTWLVKEPTADGDRMRI---AKHGEDGADHAI 221
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 222 SFYRVIETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 267
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G V K LHLH R + D P+ LR
Sbjct: 268 DDDPNWDFP-------------GGVQKK---LHLHARHI--DIPHPSGGR-------LRV 302
Query: 471 VASMPSHMKISWNLMS 486
A +P HM +WNL+
Sbjct: 303 SAPLPPHMVQTWNLLG 318
>gi|296535679|ref|ZP_06897854.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
gi|296264003|gb|EFH10453.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
Length = 331
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 111/206 (53%), Gaps = 24/206 (11%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
+A++ L ++ YRD I+ LNKP +P++G + +D + A L+++ E P+LVH
Sbjct: 87 SAEDAKALEAMILYRDDYIIALNKPHGLPVQGGPNIKKHLDGMLDA-LTFEKEERPRLVH 145
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG++L+ R + L F + K+ YWA+V+G P+
Sbjct: 146 RLDRDTSGVILLARDASAAGFLAKAFRGRDAEKT---------------YWAIVVGQPQY 190
Query: 314 KQGIIHAPLSKVLLDDGK--TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPL 371
+ G I L+K G ER++ A+ A+TE+ + +W+ELRPL
Sbjct: 191 QGGRIDMRLAK---QGGGPMGERVVPAEG---RDGAHAITEFDTVDVARRHATWLELRPL 244
Query: 372 TCRKHQLRVHCAEALGTPIVGDYKYG 397
T R HQLRVHCA AL PI+GD KYG
Sbjct: 245 TGRTHQLRVHCAAALSCPILGDGKYG 270
>gi|150396240|ref|YP_001326707.1| RluA family pseudouridine synthase [Sinorhizobium medicae WSM419]
gi|150027755|gb|ABR59872.1| pseudouridine synthase, RluA family [Sinorhizobium medicae WSM419]
Length = 330
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 176/376 (46%), Gaps = 76/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G ++++ A + K++ ++PG I +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGA----------------RAKSDTRIQPGQTIRI 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ + K+ I L + D + L R+V + D+ ++VLNKPP + ++G V+
Sbjct: 65 PPLGVDPK-EKKTGPIGGRDLRQSPDG-ELLSRMVLHEDAKVIVLNKPPGLAVQGGSGVN 122
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 123 RHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVIARTRGAAQQLTAAFRERDTKKT--- 178
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++++ I + K DG +R+ +A++ G + + A+
Sbjct: 179 ------------YWALVRGVPRKREDKISTWVVKEQTPDG--DRVRIAKH-GEDGADHAI 223
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY F
Sbjct: 224 SFYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY--F---------EA 271
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D+ T P G+ + LHLH R + + P+G L+
Sbjct: 272 DVNWTF--------PGGMQNR----------LHLHARHIDIPH--------PNG-GRLKV 304
Query: 471 VASMPSHMKISWNLMS 486
A +P HM SWNL+
Sbjct: 305 TAPLPQHMMQSWNLLG 320
>gi|149913096|ref|ZP_01901630.1| hypothetical protein RAZWK3B_03870 [Roseobacter sp. AzwK-3b]
gi|149813502|gb|EDM73328.1| hypothetical protein RAZWK3B_03870 [Roseobacter sp. AzwK-3b]
Length = 348
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 174/380 (45%), Gaps = 73/380 (19%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W++ +F H ++G ++ C G+ V+ G ++K + +E G ++ +
Sbjct: 21 WLRRHF---------PHVSQGRIEKLC-RKGELRVDGG------RVKASTRLEVGQQVRI 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P G+I D+ + +AD ++ V YRD I+ LNKPP +P++G
Sbjct: 65 PPLPDPGQI----DSASPHSRISDAD-ARMIQSAVIYRDDHIIALNKPPGLPVQGGSKQT 119
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D LA A L + E P+LVHRLD+++SG+L++ R++ LT F + K
Sbjct: 120 RHVDGLADA-LRFGAEEKPRLVHRLDKDTSGVLILARSRAVAKTLTAGFRHRDTRKI--- 175
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV--LLDDGKTERIILAQNSGLEAS-- 346
YWA V G P + G I L K G+ E+++ ++++
Sbjct: 176 ------------YWAAVAGVPSPRMGTIRFGLVKAPGHGAQGEGEKMLCLHPEAVDSTPG 223
Query: 347 -QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
+ A T++ V+ C+W+ L P+T R HQLR H AE +G PIVGD KYG
Sbjct: 224 AKRATTDFAVIESAGARCAWVALVPVTGRTHQLRAHMAE-IGHPIVGDGKYG-------- 274
Query: 406 QMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGP 465
SG+ DG Q G +S+ LHLH R L ++ P ++
Sbjct: 275 ---------GSGQENM---GDGWGAQLGGEISRK--LHLHARSLTLEH--PVSRAR---- 314
Query: 466 DLLRFVASMPSHMKISWNLM 485
L A +P HMK +W++
Sbjct: 315 --LHLTAPLPDHMKRTWDMF 332
>gi|393722169|ref|ZP_10342096.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26605]
Length = 374
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 106/202 (52%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
DEI + R +V +RD+ ++VLNKPP + +G +D L A L D PKLVHRL
Sbjct: 99 DEIAFAREMVIHRDAQVIVLNKPPGLATQGGTKTIEHVDGLLDA-LQDDLEGRPKLVHRL 157
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG L++ RT + L+ FS K+ YWALV+G P +
Sbjct: 158 DKDTSGALVIARTARAAGFLSKSFSSRTARKT---------------YWALVVGVPSIED 202
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G I P+ K G E++ + + G A T YRV+ +W+EL P T R
Sbjct: 203 GTIELPIGKQPGSGG--EKMHVDEKEG----SPARTRYRVIEMAGTTTAWVELIPYTGRT 256
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G PIVGD KYG
Sbjct: 257 HQLRVHLA-AIGHPIVGDGKYG 277
>gi|424881736|ref|ZP_18305368.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518099|gb|EIW42831.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 330
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 165/376 (43%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ ++ + I L + D L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPMDVDAKL--KSGPIAGKDLKHSTD-FQLLSRMVLHEDEKVIVLNKPPGLAVQGGSGVA 121
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 122 RHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 177
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++ + I L K DG RI G + + A+
Sbjct: 178 ------------YWALVKGVPRKHEDKISTWLVKEPTVDGDRMRI---AKHGEDGADHAI 222
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 223 SFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 268
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G V K LHLH R + D P+ LR
Sbjct: 269 DDDPNWDFP-------------GGVQKK---LHLHARHI--DIPHPSGGR-------LRV 303
Query: 471 VASMPSHMKISWNLMS 486
A +P+HM +WNL+
Sbjct: 304 SAPLPAHMVQTWNLLG 319
>gi|255263430|ref|ZP_05342772.1| ribosomal large subunit pseudouridine synthase C [Thalassiobium sp.
R2A62]
gi|255105765|gb|EET48439.1| ribosomal large subunit pseudouridine synthase C [Thalassiobium sp.
R2A62]
Length = 347
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 166/368 (45%), Gaps = 71/368 (19%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H ++G ++ C GD V+ G ++K+N +E G + +P D I
Sbjct: 28 HVSQGRIEKMC-RKGDLRVDGG------RVKSNTRVEVGQEVRVPPL-------PDADEI 73
Query: 187 PSGTLNP-NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
+G + + + + +R LV Y+D I+ LNKP + +G +D LA A L +DY
Sbjct: 74 TAGPVTKITSADAEMMRSLVIYKDDHIIALNKPSGIASQGGSKQVRHLDGLAEA-LKFDY 132
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR--Y 303
E P+LVHRLDR++SG+ +M RT+E ++KA +DA + R Y
Sbjct: 133 FEKPRLVHRLDRDTSGVFIMARTRE-----------------IAKAMSDAFKERETRKIY 175
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDD--GKTERIILAQNSGLE---ASQEAMTEYRVLGP 358
WA V G P G + L K G+ E++ +E ++ A T+Y +L
Sbjct: 176 WAAVGGVPHPAMGTVRWGLIKSGGHGRGGENEKMRCIHPREVEHTPGAKRATTDYALLDR 235
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGK 418
+ + +WI L P+T R HQLR H AE +G PI+GD KYG SG+
Sbjct: 236 LGSRAAWIALVPVTGRTHQLRAHMAE-MGHPIIGDGKYG-----------------GSGQ 277
Query: 419 PYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
DG G + + LHLH R L + P + AS+P HM
Sbjct: 278 E---NLGDGWGAGMGEEIGR--KLHLHARSLSF--------THPATGKRVNLTASLPEHM 324
Query: 479 KISWNLMS 486
K +W+ +
Sbjct: 325 KHTWDFVG 332
>gi|383642663|ref|ZP_09955069.1| RluA family pseudouridine synthase [Sphingomonas elodea ATCC 31461]
Length = 367
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 108/202 (53%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
++I+ + +V +RD++ +VLNKPP + +G +D L A L ++ PKLVHRL
Sbjct: 91 EQIELAQSMVIHRDASAIVLNKPPGLATQGGTKTFEHVDGLLDA-LQFEAEGRPKLVHRL 149
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ R+ + + FS K YWALV+G P +
Sbjct: 150 DKDTSGALLIARSARAAAYFAKSFSGRTARKI---------------YWALVMGVPDIED 194
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G I P+ K G+ ++ + + S A T YRV+ N C+W+EL+P T R
Sbjct: 195 GFIELPIGKQPGTGGEKMQVDMEEGS------PARTRYRVIEQAGNRCAWVELQPFTGRT 248
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G PIVGD KYG
Sbjct: 249 HQLRVHMA-AIGHPIVGDGKYG 269
>gi|126728208|ref|ZP_01744024.1| ribosomal large subunit pseudouridine synthase C [Sagittula
stellata E-37]
gi|126711173|gb|EBA10223.1| ribosomal large subunit pseudouridine synthase C [Sagittula
stellata E-37]
Length = 347
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 170/383 (44%), Gaps = 78/383 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W+K F V S I+ KG ++++ + K + +E G ++ +
Sbjct: 21 WLKRLFPHVAQSRIEKMCRKGELRLDGG----------------RCKASSRVETGMQVRI 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P G++ D+ P + N E+ +R V ++D I+ LNKPP + +G
Sbjct: 65 PPLPEPGQV----DSAPKPSFNEKDAEM--IRACVLWKDDHIIALNKPPGLATQGGSGQT 118
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D L+ A L++ +E P+LVHRLD+++SG+LL+ RT ++++K
Sbjct: 119 RHVDGLSEA-LTFGMDEKPRLVHRLDKDTSGVLLLART-----------------RAVAK 160
Query: 291 AWNDACEAMYQR--YWALVIGSPKE-----KQGIIHAPLSKVLLDDGKTERIILAQNSGL 343
A +A R YWALV G P K G++ AP + K + + +
Sbjct: 161 ALTEAIRHREARKIYWALVAGVPTPYLGEIKYGLVKAPGHGKGGEAEKMRCVHPKEIATT 220
Query: 344 EASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 403
E ++ A T Y L + SW+ + P+T R HQLR H AE +G PI+GD KYG
Sbjct: 221 EGAKRAHTLYATLYRVAGRASWVAMEPVTGRTHQLRAHMAE-IGHPIIGDGKYG------ 273
Query: 404 WKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPD 463
SG+ DG Q G ++SK LHLH R L L ++ P
Sbjct: 274 -----------GSGQE---NLGDGWGAQLGGIISKK--LHLHARSL---TLLHPVTKTP- 313
Query: 464 GPDLLRFVASMPSHMKISWNLMS 486
A +P HMK SW+ +
Sbjct: 314 ----FTATAPLPEHMKQSWDTLG 332
>gi|381203577|ref|ZP_09910683.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae XLDN2-5]
Length = 456
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 110/202 (54%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
DEI Y++ +V +RD +V+NKPP + +G +D L L +D PKLVHRL
Sbjct: 181 DEIAYVQDMVIHRDKQAIVINKPPGLATQGGTKTDEHVDRLLDG-LIFDAESRPKLVHRL 239
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ R+ S + FS S++ K YWA+VIG P
Sbjct: 240 DKDTSGALLLARSSRSAAHFAKAFS----SRTARKV-----------YWAIVIGVPSIDD 284
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I P++K G E++ + + GL A T YRV+ N +W+EL+P T R
Sbjct: 285 GMIELPITKQPGTGG--EKMHVDEEEGLPA----RTRYRVIERAGNRAAWVELQPYTGRT 338
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G P+VGD KYG
Sbjct: 339 HQLRVHMA-AIGHPLVGDGKYG 359
>gi|146278539|ref|YP_001168698.1| RluA family pseudouridine synthase [Rhodobacter sphaeroides ATCC
17025]
gi|145556780|gb|ABP71393.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
sphaeroides ATCC 17025]
Length = 346
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 111/353 (31%), Positives = 160/353 (45%), Gaps = 62/353 (17%)
Query: 145 VEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPS-GTLNPNADEI----- 198
V QG ++ + +T +V GAR + EG + R +P P A +
Sbjct: 29 VTQGAVEKM--CRTGQVRVDGARAKASDRVAEG-MEIRVPPLPDPDAPRPQASRVTKSDE 85
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ V Y+D+ I+VLNKP +P +G +D L A L + Y E PKLVHRLD+
Sbjct: 86 QMIQDCVIYKDNDIIVLNKPAGLPSQGGSGQGERHVDGLTEA-LKFGYKERPKLVHRLDK 144
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG+L++ RT L+ F N K YWALV G P KQG
Sbjct: 145 DTSGVLVLARTDRVARALSESFRHRNTRKI---------------YWALVAGVPSPKQGS 189
Query: 318 IHAPLSKVLLD--DGKTERIIL---AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
I L K G+ E+++ A+ ++ A T++ L + C+W+ L P+T
Sbjct: 190 IKYALMKAAGHGRGGEGEKMLCIHPAKVGDYPEAKRAQTDFFTLWFLGTRCAWMALSPIT 249
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
R HQLR H AE LG PIVGD KYG + +G DG Q
Sbjct: 250 GRTHQLRAHMAE-LGHPIVGDGKYGG------------SSQENAG--------DGWGAQI 288
Query: 433 GSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
G +S+ LHLH R L ++ P +L+ F A +P HM +W L+
Sbjct: 289 GGEVSRK--LHLHARSLTIEH--------PIRKELVTFTAPLPPHMAKTWKLL 331
>gi|427408845|ref|ZP_18899047.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
gi|425713155|gb|EKU76169.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
Length = 450
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 110/202 (54%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
DEI Y++ +V +RD +V+NKPP + +G +D L L +D PKLVHRL
Sbjct: 175 DEIAYVQDMVIHRDKQAIVINKPPGLATQGGTKTDEHVDRLLDG-LIFDAESRPKLVHRL 233
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ R+ S + FS S++ K YWA+VIG P
Sbjct: 234 DKDTSGALLLARSSRSAAHFAKAFS----SRTARKV-----------YWAIVIGVPSIDD 278
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I P++K G E++ + + GL A T YRV+ N +W+EL+P T R
Sbjct: 279 GMIELPITKQPGTGG--EKMHVDEEEGLPAR----TRYRVIERAGNRAAWVELQPYTGRT 332
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G P+VGD KYG
Sbjct: 333 HQLRVHMA-AIGHPLVGDGKYG 353
>gi|99080132|ref|YP_612286.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TM1040]
gi|99036412|gb|ABF63024.1| ribosomal large subunit pseudouridine synthase C [Ruegeria sp.
TM1040]
Length = 348
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 171/365 (46%), Gaps = 70/365 (19%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H N+G ++ C G+ ++ G ++K N +E G + +P + E + K +
Sbjct: 28 HVNQGRIEKMC-RKGELRLDGG------RVKANTRVEAGQVVRVP-PLAESDM-KPAEAR 78
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
P + +A I R V Y+D +LV+NKP + ++G +D L+ A L +D
Sbjct: 79 PVKISDADAKMI---RDCVIYKDDDVLVINKPAGLAVQGGSGTTKHVDGLSEA-LRFDAE 134
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
+ P+LVHRLD+++SGLL++ R +++ LT F N K YWAL
Sbjct: 135 DKPRLVHRLDKDTSGLLVLARNRKAAQGLTAAFRHKNTRKI---------------YWAL 179
Query: 307 VIGSP-----KEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEAS---QEAMTEYRVLGP 358
V G P + K G++ AP G+ E++I ++A+ + A T Y L
Sbjct: 180 VAGVPTPYLGEIKTGLVKAPGHG---KSGEGEKMIPVDPRDVDATPGAKRAHTYYATLYR 236
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGK 418
+ + SW+ + P+T R HQLR H A +G PI+GD KYG SG+
Sbjct: 237 VASRASWVAMEPVTGRTHQLRAHMA-GMGHPIIGDGKYG-----------------GSGQ 278
Query: 419 PYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
DG Q G ++SK LHLH R L+ ++ P ++ A++P HM
Sbjct: 279 E---NLGDGWGAQIGGLISK--KLHLHARRLQFEH--------PVTGKVVTVTAALPDHM 325
Query: 479 KISWN 483
K SW+
Sbjct: 326 KESWD 330
>gi|424910331|ref|ZP_18333708.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846362|gb|EJA98884.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 329
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 153/332 (46%), Gaps = 61/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++KT+ ++PG + +P V+ + + I S L +AD + L R++ + D + V
Sbjct: 49 RVKTDARLQPGQMVRVPP--VDSDMKTKSGPIGSKDLKHSADG-ELLARMLLHEDDKVFV 105
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V +D L A + E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 106 FNKPAGIAVQGGSGVTRHIDGLLEA-WTNQKGEKPRLVHRLDRDTSGVLVVARTRGAAQK 164
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ Q I L K DG R
Sbjct: 165 LTAAFRERDTKKT---------------YWALVKGVPRKHQDKISTWLVKEQTIDGDRMR 209
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G E + A++ YRV+ +W+E+ P T R HQLRVH +G PI+GD
Sbjct: 210 IA---KHGEEGADHAVSYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDP 265
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + P D P G +QK LHLH R +
Sbjct: 266 KY-------YIDDPNWDF------------PGG--IQK--------RLHLHARHID---- 292
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G LR A +P HM +WNL+
Sbjct: 293 IP----HPNG-GRLRVSAPLPPHMVQTWNLLG 319
>gi|259416795|ref|ZP_05740715.1| ribosomal large subunit pseudouridine synthase C [Silicibacter sp.
TrichCH4B]
gi|259348234|gb|EEW60011.1| ribosomal large subunit pseudouridine synthase C [Silicibacter sp.
TrichCH4B]
Length = 348
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 167/365 (45%), Gaps = 70/365 (19%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H N+G ++ C G+ ++ G++K +++ +V+ + E R K D
Sbjct: 28 HVNQGRIEKMC-RKGELRLDGGRVKANTRVEAGQVVRVPPLAKSDMKPAEARPVKISDA- 85
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
+ +R V Y+D +LV+NKP + ++G +D L+ A L +D
Sbjct: 86 ----------DAKMIRDCVVYKDDDVLVINKPAGLAVQGGSGTTKHVDGLSEA-LRFDAE 134
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
+ P+LVHRLD+++SGLL++ R +++ LT F N K YWAL
Sbjct: 135 DKPRLVHRLDKDTSGLLVLARNRKAAQGLTAAFRHKNTRKI---------------YWAL 179
Query: 307 VIGSP-----KEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEAS---QEAMTEYRVLGP 358
V G P + K G++ AP G+ E++I ++A+ + A T Y L
Sbjct: 180 VAGVPTPYLGEIKTGLVKAPGHG---KSGEGEKMIPVDPRDVDATPGAKRAHTYYATLYR 236
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGK 418
+ + SW+ + P+T R HQLR H A +G PI+GD KYG SG+
Sbjct: 237 VASRASWVAMEPVTGRTHQLRAHMA-GMGHPIIGDGKYG-----------------GSGQ 278
Query: 419 PYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
DG Q G ++SK LHLH R L+ ++ P ++ A++P HM
Sbjct: 279 E---NLGDGWGAQIGGLISK--KLHLHARRLQFEH--------PVTGKVVTVTAALPDHM 325
Query: 479 KISWN 483
K SW+
Sbjct: 326 KESWD 330
>gi|409399405|ref|ZP_11249694.1| pseudouridine synthase [Acidocella sp. MX-AZ02]
gi|409131440|gb|EKN01147.1| pseudouridine synthase [Acidocella sp. MX-AZ02]
Length = 327
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 133/286 (46%), Gaps = 63/286 (22%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L R+V Y+D +++VLNKP +P++G + +D + A L ++ E PKLVHRLDR++S
Sbjct: 88 LERMVIYQDDSVIVLNKPAGLPVQGGSGIAVHVDGMLDA-LQGEHPERPKLVHRLDRDTS 146
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+L++ R+ + + L+ F + K+ YWAL++G P +G I
Sbjct: 147 GVLVIARSAKVAAKLSAAFRGRDVEKT---------------YWALLVGLPDALEGRIDL 191
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL ++ D G+T R A EA Q+A+T+YR+L EL P T R HQLR
Sbjct: 192 PLKRI--DLGQTSRAEPASRKDKEA-QKAITDYRILDKAGRKFCLAELSPHTGRMHQLRA 248
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
HC ALGTPI+GD YG H +
Sbjct: 249 HCL-ALGTPILGDEVYGSAYHEHFANQ--------------------------------- 274
Query: 441 LLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R L FP P+G LL A +P HM N +
Sbjct: 275 -LHLHARRLS----FP----HPEG-GLLSIEAELPKHMVNGLNYLG 310
>gi|224129472|ref|XP_002328725.1| predicted protein [Populus trichocarpa]
gi|222839023|gb|EEE77374.1| predicted protein [Populus trichocarpa]
Length = 116
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 89/121 (73%), Gaps = 5/121 (4%)
Query: 35 MWKKQAEFIWLSSIRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHN 94
MW+++ + S +R YSR++P V+RV+ K VA LG PK GPKPRQLLSLPPFPG
Sbjct: 1 MWRQRV--LVSSGVRLYSRVAP---QVVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGFP 55
Query: 95 LPGKHWGRQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIR 154
LPGK CHVTA+SWVKYYFDE+QDSVIQSHFNK LVQ+EC + DS +G KP+R
Sbjct: 56 LPGKKSLNACHVTAISWVKYYFDEIQDSVIQSHFNKSLVQIECPSSSDSVEMEGLGKPMR 115
Query: 155 K 155
K
Sbjct: 116 K 116
>gi|86135800|ref|ZP_01054379.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
MED193]
gi|85826674|gb|EAQ46870.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
MED193]
Length = 348
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 168/365 (46%), Gaps = 70/365 (19%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVME--PGARIFL-PVSMVEGRISKRY 183
H N+G ++ C G+ ++ G++K ++ +V+ P A L P + RIS+
Sbjct: 28 HVNQGRIEKMC-RKGELRLDGGRVKANTRVAAGQVVRVPPLAESDLKPAAPRVARISE-- 84
Query: 184 DTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY 243
+ +R V Y+D ++VLNKP + ++G +D LA A L +
Sbjct: 85 ------------TDAKMIRGCVIYKDDDVIVLNKPAGLAVQGGSGTTKHVDGLADA-LRF 131
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
D E P+LVHRLD+++SG+L++ R + + LT F N K Y
Sbjct: 132 DAEEKPRLVHRLDKDTSGVLVLARNRLAAKSLTAAFRHRNTRKI---------------Y 176
Query: 304 WALVIGSPKEKQGIIHAPLSK--VLLDDGKTERIILAQNSGLE---ASQEAMTEYRVLGP 358
WALV G P G I A L K G+ E++I + ++ ++ A T Y L
Sbjct: 177 WALVAGVPTPYLGEIKAGLVKAGGHGAGGEGEKMIAVHPNEIDRTPGAKRAHTYYATLYR 236
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGK 418
+ SW+ + P+T R HQLR H AE +G PI+GD KYG SG+
Sbjct: 237 VAGRASWVAMEPVTGRTHQLRAHMAE-IGHPIIGDGKYG-----------------GSGQ 278
Query: 419 PYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
DG Q G V+SK LHLH R L +F ++K D + +A +PSHM
Sbjct: 279 E---NLGDGWGAQLGGVISK--KLHLHARRL----VFEHPTTKKD----IVMMAELPSHM 325
Query: 479 KISWN 483
K SW
Sbjct: 326 KDSWE 330
>gi|452965910|gb|EME70927.1| 23S rRNA pseudouridylate synthase [Magnetospirillum sp. SO-1]
Length = 335
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 157/332 (47%), Gaps = 63/332 (18%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF- 169
W K +F + +++ G V+++ ++ K+N+ +E G I
Sbjct: 21 WFKRHFPAIGHGLLEKWLRAGNVRVDG----------------KRAKSNQRLEAGQAIRV 64
Query: 170 --LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHL 227
LP + G ++ + P+ A LR V Y D I+ LNKPP + ++G
Sbjct: 65 PPLPAAEAPGSEARPREARPAPVDEKTAR---MLRDAVIYMDDDIIALNKPPGLAVQGGT 121
Query: 228 PVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKS 287
+ + ALS+ PKLVHRLD+++SG+LL+GRT + + L F KS++
Sbjct: 122 GMADKHLDAWLDALSFGAGR-PKLVHRLDKDTSGVLLLGRTANATAKLAAAF----KSRA 176
Query: 288 LSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQ 347
K C YWALV G P+ QG I APL+K+ G E++ + + G +
Sbjct: 177 ARK-----C------YWALVAGVPRYPQGRIDAPLAKLPGKAG--EKVAVDKEDG----K 219
Query: 348 EAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG---------- 397
A+T YRV+ + +W+E+ P T R HQLR HC LGTPI+GD KYG
Sbjct: 220 HAVTYYRVVDSTLKRAAWLEMEPRTGRTHQLRAHCL-LLGTPIMGDGKYGGAAALIEGTG 278
Query: 398 ----WFVHRRWKQMPRVDIEPTSGKPYKLRRP 425
+H R ++P P +GKP ++ P
Sbjct: 279 VSRKLHLHARAVRLP----HPRTGKPIEISAP 306
>gi|408785243|ref|ZP_11196990.1| ribosomal large subunit pseudouridine synthase C [Rhizobium lupini
HPC(L)]
gi|408488837|gb|EKJ97144.1| ribosomal large subunit pseudouridine synthase C [Rhizobium lupini
HPC(L)]
Length = 329
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/332 (31%), Positives = 153/332 (46%), Gaps = 61/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++KT+ ++PG + +P V+ + + I S L +AD + L R++ + D + V
Sbjct: 49 RVKTDARVQPGQMVRVPP--VDSDMKTKSGPIGSKDLKNSADG-ELLARMLLHEDDKVFV 105
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V +D L A + E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 106 FNKPAGIAVQGGSGVTRHIDGLLEA-WTNQKGEKPRLVHRLDRDTSGVLVVARTRGAAQK 164
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ Q I L K DG R
Sbjct: 165 LTAAFRERDTKKT---------------YWALVKGVPRKHQDKISTWLVKEQTIDGDRMR 209
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G E + A++ YRV+ +W+E+ P T R HQLRVH +G PI+GD
Sbjct: 210 IA---KHGEEGADHAVSYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDP 265
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + P D P G +QK LHLH R +
Sbjct: 266 KY-------YIDDPNWDF------------PGG--IQK--------RLHLHARHID---- 292
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G LR A +P HM +WNL+
Sbjct: 293 IP----HPNG-GRLRVSAPLPPHMVQTWNLLG 319
>gi|421588806|ref|ZP_16034046.1| RNA-pseudouridine synthase, ribosomal large subunit C [Rhizobium
sp. Pop5]
gi|403706422|gb|EJZ21688.1| RNA-pseudouridine synthase, ribosomal large subunit C [Rhizobium
sp. Pop5]
Length = 330
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/376 (28%), Positives = 167/376 (44%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQTVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ ++ + I L + D D L R+V + D ++VLNKPP + ++G V
Sbjct: 65 PPLDVDAKL--KSGPIAGKDLKHSTD-FDLLSRMVLHEDEKVIVLNKPPGLAVQGGSGVA 121
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 122 RHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 177
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YW+LV G P++ + I L K DG RI G E + A+
Sbjct: 178 ------------YWSLVRGVPRKHEDKISTWLVKEPTADGDRMRI---AKHGEEGADHAV 222
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY F+ P
Sbjct: 223 SFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY--FI-----DDPNW 274
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D P G +QK LHLH R + D P+ LR
Sbjct: 275 DF------------PGG--IQK--------RLHLHARHI--DIPHPSGGR-------LRV 303
Query: 471 VASMPSHMKISWNLMS 486
A +P HM +WNL+
Sbjct: 304 SAPLPPHMVQTWNLLG 319
>gi|86357851|ref|YP_469743.1| pseudouridylate synthase, ribosomal large subunit C protein
[Rhizobium etli CFN 42]
gi|86281953|gb|ABC91016.1| pseudouridylate synthase, ribosomal large subunit C protein
[Rhizobium etli CFN 42]
Length = 317
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 6 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDARVQPGQMVRV 49
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ ++ + I L ++D + L R+V + D ++VLNKPP + ++G V
Sbjct: 50 PPLDVDAKL--KSGPIAGKDLKHSSD-FELLSRMVLHEDEKVIVLNKPPGLAVQGGSGVA 106
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A +S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 107 RHIDQMLEAWIS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 162
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YW+LV G P++ + I L K DG RI G + + A+
Sbjct: 163 ------------YWSLVKGVPRKHEDKISTWLVKEPTADGDRMRI---AKHGEDGADHAV 207
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 208 SYYRVVETAAQRLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 253
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P +++ LHLH R + D P+ LR
Sbjct: 254 DDDPNWDFPGGIQK----------------RLHLHARHI--DIPHPSGGR-------LRV 288
Query: 471 VASMPSHMKISWNLMS 486
A +P HM SWNL+
Sbjct: 289 TAPLPPHMVQSWNLLG 304
>gi|288958958|ref|YP_003449299.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
gi|288911266|dbj|BAI72755.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
Length = 354
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 171/379 (45%), Gaps = 87/379 (22%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F +V S +Q G V+++ ++ +T+ + G + +
Sbjct: 38 WFKRHFPDVNHSYLQKLLRTGQVRIDG----------------KRAETSSRLAAGQGVRI 81
Query: 171 P-----VSMVEG--RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL 223
P + V+G S + P G + +I L+ LV YRD+ ++ +NKP + +
Sbjct: 82 PPLAAWAAPVKGPNHGSNQGAGKPKGMSD---KQIAELQALVLYRDADVIAINKPAGLAV 138
Query: 224 KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVN 283
+G +DA+ A L +D NE PKLVHRLD+++SG+LL+ RT + S LT LF
Sbjct: 139 QGGTGTSKHLDAMLDA-LRFDGNERPKLVHRLDKDTSGVLLLARTTFAASKLTELFR--- 194
Query: 284 KSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGL 343
A+ + YWA+ +G P QG I L+K +G +A+N
Sbjct: 195 ------------GSAVRKIYWAVTVGVPTPYQGKIDLALAK----EGGPHGERVAENK-- 236
Query: 344 EASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 403
E + A+T Y V + +++ + PLT R HQLRVH A A+GTPI+GD KY
Sbjct: 237 EEGKRAVTVYSVQENVGKQAAFVAMWPLTGRTHQLRVHMA-AVGTPILGDGKY------- 288
Query: 404 WKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPD 463
+G+ L G +V K LHLH R L + P P
Sbjct: 289 ------------AGQGAFLA---GAEVAK--------KLHLHARRL----ILP----HPR 317
Query: 464 GPDLLRFVASMPSHMKISW 482
G + A +P HM+ +W
Sbjct: 318 GGKTIDVTAPLPDHMQATW 336
>gi|126737039|ref|ZP_01752774.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
SK209-2-6]
gi|126721624|gb|EBA18327.1| ribosomal large subunit pseudouridine synthase C [Roseobacter sp.
SK209-2-6]
Length = 348
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/369 (29%), Positives = 172/369 (46%), Gaps = 72/369 (19%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF-LPVSMVEGRISKRYDT 185
H N+G ++ C G+ ++ G++K ++ T +V+ R+ LP S ++
Sbjct: 28 HVNQGRIEKMC-RKGELRLDGGRVKASTRVATGQVV----RVPPLPASDLK-------PA 75
Query: 186 IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
P T +AD +R V Y+D ++VLNKP + ++G +D L+ A L +
Sbjct: 76 EPRATKISDAD-AKMIRGCVIYKDDDVIVLNKPAGLAVQGGSGTTRHVDGLSEA-LRLEA 133
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
E P+LVHRLD+++SG+L++ R +++ LT F N K YWA
Sbjct: 134 EEKPRLVHRLDKDTSGVLVLARNRKAAQALTAAFRHKNTRKI---------------YWA 178
Query: 306 LVIGSP-----KEKQGIIHAPLSKVLLDDGKTERIILAQNSGLE---ASQEAMTEYRVLG 357
LV G P + K G++ AP G+ E++I ++ ++ A T Y L
Sbjct: 179 LVAGVPTPYLGEIKTGLVKAPGHG---RSGEGEKMIPVHPRDIDDTPGAKRAHTHYATLY 235
Query: 358 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSG 417
+ + SW+ + P+T R HQLR H A A+G PI GD KYG SG
Sbjct: 236 RVASRASWVAMEPITGRTHQLRAHMA-AIGHPIAGDGKYG-----------------GSG 277
Query: 418 KPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSH 477
+ DG Q G ++SK LHLH R L ++ +S KP + A +P H
Sbjct: 278 QE---NLGDGWGAQLGGIISK--KLHLHARRLVFEH---PVSHKP-----ISVEAELPEH 324
Query: 478 MKISWNLMS 486
MK SW+ +
Sbjct: 325 MKESWDTLG 333
>gi|398384716|ref|ZP_10542744.1| pseudouridine synthase, RluA family [Sphingobium sp. AP49]
gi|397721996|gb|EJK82541.1| pseudouridine synthase, RluA family [Sphingobium sp. AP49]
Length = 447
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 112/208 (53%), Gaps = 23/208 (11%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP 249
++ DEI Y++ +V +RD +V+NKPP + +G +D L L +D P
Sbjct: 166 VIDLTEDEIAYVQDMVIHRDKQAIVINKPPGLATQGGTKTDEHVDRLLDG-LIFDAESRP 224
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
KLVHRLD+++SG LL+ R+ S + FS S++ K YWA+VIG
Sbjct: 225 KLVHRLDKDTSGALLIARSSRSAAHFAKAFS----SRTARKV-----------YWAIVIG 269
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
P G+I P++K G E++ + + GL A T YRV+ N +W+EL+
Sbjct: 270 VPSINDGMIELPIAKQPGTGG--EKMHVDEAEGLPAR----TRYRVIERAGNRAAWVELQ 323
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P T R HQLRVH A A+G P+VGD KYG
Sbjct: 324 PYTGRTHQLRVHMA-AIGHPLVGDGKYG 350
>gi|393773266|ref|ZP_10361664.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. Rr 2-17]
gi|392721146|gb|EIZ78613.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. Rr 2-17]
Length = 442
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 121/252 (48%), Gaps = 38/252 (15%)
Query: 157 KTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNA-----------DEIDYLRRLV 205
+T ++ G R + +V G+ + P G + P +E++ +V
Sbjct: 43 RTGQIRVDGKRAEVDTRLVAGQTLR---VPPGGEIKPGGNAPRPRKPLTEEELELADSMV 99
Query: 206 KYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLM 265
+D A +VLNKPP + +G H +D L A + P+LVHRLD+++SG+LL+
Sbjct: 100 LTQDRAAIVLNKPPGLATQGGTGTHAHVDGLLDAYAASGPR--PRLVHRLDKDTSGVLLI 157
Query: 266 GRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV 325
R+ S + + FS K YWALV+G P G+I P++K
Sbjct: 158 ARSAGSAAFFSKRFSGRTARKI---------------YWALVVGVPGIHDGMIELPIAKQ 202
Query: 326 LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEA 385
G+ + EA Q A T YRV+ N +W+EL PLT R HQLRVH A A
Sbjct: 203 PGTGGEKMHVDK------EAGQVARTRYRVIDRAGNSAAWVELHPLTGRTHQLRVHMA-A 255
Query: 386 LGTPIVGDYKYG 397
+G PIVGD KYG
Sbjct: 256 IGHPIVGDGKYG 267
>gi|290979858|ref|XP_002672650.1| predicted protein [Naegleria gruberi]
gi|284086228|gb|EFC39906.1| predicted protein [Naegleria gruberi]
Length = 624
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 32/230 (13%)
Query: 184 DTIPSGTL-NP-------------NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
DTI S TL NP ++I+ +R + +++ I+ LNKP + ++G
Sbjct: 377 DTISSETLGNPIYSKNGGKMKLELTQEQIEEIRSWILFKNDEIIALNKPYGICVQGGSNQ 436
Query: 230 HNSMDALAAAALSYD-YNEGPKLVHRLDRESSGLLLMGRTKE-SVSLLTWLFSDVNKSKS 287
+DAL A D +N PKLVHRLDR+++G+L++ R + ++ + WL
Sbjct: 437 TFHIDALLDALTGLDGFNVRPKLVHRLDRDTTGVLIVARNRAGAIRMQQWL--------- 487
Query: 288 LSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQ 347
++ + + YWA+ +G P G I + + D E+++ N ++S+
Sbjct: 488 -----QESTVPLKKCYWAVTVGVPTPTTGRIKMVID-IQKDANGVEKVVPVDNK-TDSSK 540
Query: 348 EAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+++EY+ + M + +W+ L P+T RKHQLRVHCA ALG PI+GDYKYG
Sbjct: 541 ISVSEYKTIDHMTDKLAWVALYPVTGRKHQLRVHCASALGAPILGDYKYG 590
>gi|393721178|ref|ZP_10341105.1| RluA family pseudouridine synthase [Sphingomonas echinoides ATCC
14820]
Length = 369
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 107/202 (52%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
DEI + R +V +RD+ +VLNKPP + +G +D L A L D PKLVHRL
Sbjct: 94 DEITFAREMVIHRDAQAIVLNKPPGLATQGGTKTIEHVDGLLDA-LQDDLEGRPKLVHRL 152
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ RT + + + FS K+ YWALV+G P +
Sbjct: 153 DKDTSGALLIARTARAAAYFSKSFSSRTARKT---------------YWALVVGVPSIED 197
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I P++K G E++ + + G A T YRV+ +W+EL P T R
Sbjct: 198 GMIELPIAKQPGTGG--EKMHVDEKEG----SPARTRYRVIEMAGTTTAWLELIPYTGRT 251
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G PIVGD KYG
Sbjct: 252 HQLRVHLA-AIGHPIVGDGKYG 272
>gi|357976563|ref|ZP_09140534.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
KC8]
Length = 368
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 138/291 (47%), Gaps = 63/291 (21%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
++ ++++ LV +RD +V+NKPP + +G +D L A L++D PKLVHRL
Sbjct: 93 EDTEFMQSLVIHRDRQAIVINKPPGLATQGGTKTERHVDGLLDA-LTFDAEGRPKLVHRL 151
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG+LL+ R+ + FS S++ K YWAL+ G P +
Sbjct: 152 DKDTSGVLLLARSANAAGHFAKAFS----SRTARKV-----------YWALITGVPSIED 196
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I P++K G E++ + + G A T YRV+ N +W+EL+P T R
Sbjct: 197 GMIELPIAKQPGTGG--EKMHVDEKEG----SPARTRYRVIERAGNRAAWVELQPYTGRT 250
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A A+G PIVGD KYG G+ L G V
Sbjct: 251 HQLRVHMA-AIGHPIVGDGKYG-------------------GQEAYL---------TGGV 281
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
K +HLH R L+ D+ PDG + A +P+H S L+
Sbjct: 282 SRK---MHLHARRLRVDH--------PDGGQ-IDVRADLPTHFSESLELLG 320
>gi|357384683|ref|YP_004899407.1| ribosomal large subunit pseudouridine synthase C [Pelagibacterium
halotolerans B2]
gi|351593320|gb|AEQ51657.1| ribosomal large subunit pseudouridine synthase C [Pelagibacterium
halotolerans B2]
Length = 333
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 139/293 (47%), Gaps = 57/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D+LR L+ Y D + V NKP + ++G +D + + L E P+LVH
Sbjct: 81 NQKDADFLRDLILYEDDDVYVFNKPHGLAVQGGSGTKRHIDGMLKS-LPNKKGEPPRLVH 139
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG LL+ +T+ + S F V +S+S K YWA+ IG P
Sbjct: 140 RLDRDTSGCLLVAKTRAAASH----FGTVFRSRSARKI-----------YWAITIGVPHP 184
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
+QG I L++ DG E++++ +N G E +Q +++ Y V N +W+ L+P+T
Sbjct: 185 RQGRISCFLARQSTQDG--EQMVVVEN-GTEGAQHSVSYYSVTESAANQFAWVTLKPVTG 241
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH E LGTPI+ D +Y + + RP+ ++ KG
Sbjct: 242 RTHQLRVHMME-LGTPILDDPRYNTL------------------ENWNFERPE--ELGKG 280
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R L P S K L A +P HMK S+ +
Sbjct: 281 --------LHLHARRLA----IPLRSGK-----RLDITAPLPPHMKASFETLG 316
>gi|114704677|ref|ZP_01437585.1| ribosomal large subunit pseudouridine synthase C [Fulvimarina
pelagi HTCC2506]
gi|114539462|gb|EAU42582.1| ribosomal large subunit pseudouridine synthase C [Fulvimarina
pelagi HTCC2506]
Length = 328
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 153/332 (46%), Gaps = 60/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
+ K++ + PG + +P + + S + + + T+ D D L ++V Y D ++V
Sbjct: 49 RAKSDTRVAPGQMVRVPPLATDSKTSTNH-PLTANTIKGRPDG-DVLSQMVIYEDEKVIV 106
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V +D + A E P+LVHRLDR++SG+L++ RT+ + +
Sbjct: 107 FNKPAGLAVQGGSGVARHVDDMLEA-WRNKKGEKPRLVHRLDRDTSGILVVARTRGAATA 165
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K YWA+V G P +K+G I L K DG R
Sbjct: 166 LTKAFRERDTKKL---------------YWAVVKGVPAKKEGRISTYLKKEQTPDGDRMR 210
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G E + A++ YRV+ + +W+EL P T R HQLRVH A +G PI+GD
Sbjct: 211 IA---RHGDEGADHALSHYRVIDQVAQNFAWLELEPHTGRTHQLRVHAAH-IGHPILGDP 266
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY F H + P G V + LHLH R L +
Sbjct: 267 KY--FEHDTNWEFP------------------------GGVQMR---LHLHARRL----V 293
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P G ++ +A +P HM+ ++NL
Sbjct: 294 IP----HPSG-GMIDQIAPLPQHMRQTFNLFG 320
>gi|417860108|ref|ZP_12505164.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens F2]
gi|338823172|gb|EGP57140.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens F2]
Length = 329
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 156/333 (46%), Gaps = 63/333 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLN-PNADEIDYLRRLVKYRDSAIL 213
++KT+ ++PG + +P + R+ + P G+ + ++++ + L R++ + D +
Sbjct: 49 RVKTDARVQPGQMVRVPPVDSDLRVK----SGPIGSRDLKHSEDAELLARMLLHEDDKVF 104
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
V NKP + ++G V+ +D L A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 105 VFNKPAGIAVQGGSGVNRHIDGLLEAWTS-PKGEKPRLVHRLDRDTSGVLVVARTRGAAQ 163
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F + + K+ YWALV G P++ Q I L K DG
Sbjct: 164 KLTAAFRERDTKKT---------------YWALVKGVPRKHQDKISTWLVKEQTADGDRM 208
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
RI G E + A++ YRV+ +W+E+ P T R HQLRVH +G PI+GD
Sbjct: 209 RI---AKHGEEGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGD 264
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY + P D P G +QK LHLH R +
Sbjct: 265 PKY-------YIDDPNWDF------------PGG--IQK--------RLHLHARHID--- 292
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G LR A +P HM +WNL+
Sbjct: 293 -IP----HPNG-GRLRVSAPLPPHMVQTWNLLG 319
>gi|405382859|ref|ZP_11036635.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
gi|397320620|gb|EJJ25052.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
Length = 330
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 153/332 (46%), Gaps = 61/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K++ ++PG + +P V+ + + I L ++D + L R+V + D ++V
Sbjct: 49 RVKSDARVQPGQMVRIPPLDVDAK--AKSGPIAGKDLKHSSD-FELLSRMVLHEDEKVIV 105
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
LNKPP + ++G V +D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 106 LNKPPGLAVQGGSGVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQK 164
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ + I L K DG R
Sbjct: 165 LTAAFRERDTKKT---------------YWALVKGVPRKHEDKISTWLVKEPTADGDRMR 209
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G + + A++ YRVL +W+E+ P T R HQLRVH +G PI+GD
Sbjct: 210 I---AKHGEDGADHAVSFYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDP 265
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY D +P P G + K LHLH R + D
Sbjct: 266 KY-------------YDDDPNWDFP-------------GGIQKK---LHLHARHI--DIP 294
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P+ LR A +P HM +WNL+
Sbjct: 295 HPSGGR-------LRISAPLPPHMVQTWNLLG 319
>gi|395491878|ref|ZP_10423457.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26617]
Length = 373
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 107/202 (52%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
DEI + R +V +RD+ +VLNKPP + +G +D L A L D PKLVHRL
Sbjct: 98 DEITFAREMVIHRDAQAIVLNKPPGLATQGGTKTIEHVDGLLDA-LQDDMEGRPKLVHRL 156
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ RT + + + FS K+ YWALV+G P +
Sbjct: 157 DKDTSGALLIARTARAAAYFSKSFSSRTARKT---------------YWALVVGVPSIED 201
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I P++K G E++ + + G A T YRV+ +W+EL P T R
Sbjct: 202 GMIELPIAKQPGTGG--EKMHVDEKEG----SPARTRYRVIEMAGTTTAWLELIPHTGRT 255
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G PIVGD KYG
Sbjct: 256 HQLRVHLA-AIGHPIVGDGKYG 276
>gi|404254692|ref|ZP_10958660.1| RluA family pseudouridine synthase [Sphingomonas sp. PAMC 26621]
Length = 373
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 107/202 (52%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
DEI + R +V +RD+ +VLNKPP + +G +D L A L D PKLVHRL
Sbjct: 98 DEITFAREMVIHRDAQAIVLNKPPGLATQGGTKTIEHVDGLLDA-LQDDLEGRPKLVHRL 156
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ RT + + + FS K+ YWALV+G P +
Sbjct: 157 DKDTSGALLIARTARAAAYFSKSFSSRTARKT---------------YWALVVGVPSIED 201
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I P++K G E++ + + G A T YRV+ +W+EL P T R
Sbjct: 202 GMIELPIAKQPGTGG--EKMHVDEKEG----SPARTRYRVIEMAGTTTAWLELIPHTGRT 255
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G PIVGD KYG
Sbjct: 256 HQLRVHLA-AIGHPIVGDGKYG 276
>gi|56551335|ref|YP_162174.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|260753046|ref|YP_003225939.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411894|ref|YP_005621259.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|56542909|gb|AAV89063.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552409|gb|ACV75355.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932268|gb|AEH62808.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 374
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 113/201 (56%), Gaps = 23/201 (11%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
EI++ + LV +RD A +V+NKP + +G H +D L A L ++ PKLVHRLD
Sbjct: 89 EIEFAQSLVIHRDKAAIVVNKPAGLATQGGTKTHYHLDGLLDA-LQFEAPSRPKLVHRLD 147
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SG+LL+ R+ N + SKA+ + ++ YWALV+G P +G
Sbjct: 148 KDTSGVLLLARS-------------ANNAGYFSKAF--SGRTAHKVYWALVVGVPSITEG 192
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+I PL++ G E++ + + +G A T YRV+ N W+EL+PLT R H
Sbjct: 193 LIDLPLARQPGSGG--EKMHVDEENGATAK----TLYRVIERAGNAACWLELQPLTGRTH 246
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLR H + A+G PIVGD KYG
Sbjct: 247 QLRAHLS-AIGFPIVGDGKYG 266
>gi|397676697|ref|YP_006518235.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397386|gb|AFN56713.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 374
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 113/201 (56%), Gaps = 23/201 (11%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
EI++ + LV +RD A +V+NKP + +G H +D L A L ++ PKLVHRLD
Sbjct: 89 EIEFAQSLVIHRDKAAIVVNKPAGLATQGGTKTHYHLDGLLDA-LQFEAPSRPKLVHRLD 147
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SG+LL+ R+ N + SKA+ + ++ YWALV+G P +G
Sbjct: 148 KDTSGVLLLARS-------------ANNAGYFSKAF--SGRTAHKVYWALVVGVPSITEG 192
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+I PL++ G E++ + + +G A T YRV+ N W+EL+PLT R H
Sbjct: 193 LIDLPLARQPGSGG--EKMHVDEENGATAK----TLYRVIERAGNAACWLELQPLTGRTH 246
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLR H + A+G PIVGD KYG
Sbjct: 247 QLRAHLS-AIGFPIVGDGKYG 266
>gi|374292582|ref|YP_005039617.1| 23S rRNA pseudouridylate synthase [Azospirillum lipoferum 4B]
gi|357424521|emb|CBS87400.1| 23S rRNA pseudouridylate synthase [Azospirillum lipoferum 4B]
Length = 354
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 163/375 (43%), Gaps = 83/375 (22%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDS---FVEQGQMKPIRKIKTNEVMEPGAR 167
W K +F +V S +Q G V+++ S QG P V P
Sbjct: 42 WFKRHFPDVNHSYLQKLLRTGQVRIDGKRAETSSRLVAGQGVRIPPLAAWAAPVKGPNPG 101
Query: 168 IFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHL 227
P M + +I++ L+ LV YRD+ ++ +NKP + ++G
Sbjct: 102 AGKPKGMSDKQIAE-------------------LQALVLYRDADVIAINKPAGLAVQGGT 142
Query: 228 PVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKS 287
+DA+ A L +D NE PKLVHRLD+++SG+LL+ RT + S LT LF
Sbjct: 143 GTSKHLDAMLDA-LRFDGNERPKLVHRLDKDTSGVLLLARTTFAASKLTELFR------- 194
Query: 288 LSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQ 347
A+ + YWA+ +G P QG I L+K +G +A+N E +
Sbjct: 195 --------GSAVRKIYWAVTVGVPTPYQGKIDLALAK----EGGPHGERVAENK--EEGK 240
Query: 348 EAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQM 407
A+T Y V + +++ + PLT R HQLRVH A A+GTPI+GD KY
Sbjct: 241 RAVTVYSVQENVGKQAAFVAMWPLTGRTHQLRVHMA-AVGTPILGDGKY----------- 288
Query: 408 PRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDL 467
+G+ L G +V K LHLH R L + P P G
Sbjct: 289 --------AGQGAFLA---GAEVTK--------KLHLHARRL----ILP----HPRGGKT 321
Query: 468 LRFVASMPSHMKISW 482
+ A +P HM+ +W
Sbjct: 322 IDVTAPLPDHMQATW 336
>gi|418296255|ref|ZP_12908099.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens CCNWGS0286]
gi|355539687|gb|EHH08925.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
tumefaciens CCNWGS0286]
Length = 329
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 155/332 (46%), Gaps = 61/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++KT+ ++PG + +P V+ + + I S L ++++ + L R++ + D + V
Sbjct: 49 RVKTDARVQPGQMVRVPP--VDSDLKVKSGPIGSRDLK-HSEDAELLARMLLHEDDKVFV 105
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V+ +D L A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 106 FNKPAGIAVQGGSGVNRHIDGLLEAWTS-PKGEKPRLVHRLDRDTSGVLVVARTRGAAQK 164
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ Q I L K DG R
Sbjct: 165 LTAAFRERDTKKT---------------YWALVKGVPRKHQDKISTWLVKEQTMDGDRMR 209
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G E + A++ YRV+ +W+E+ P T R HQLRVH +G PI+GD
Sbjct: 210 I---AKHGEEGADHAVSYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDP 265
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + P D P G +QK LHLH R +
Sbjct: 266 KY-------YIDDPNWDF------------PGG--IQK--------RLHLHARHID---- 292
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G LR A +P HM +WNL+
Sbjct: 293 IP----HPNG-GRLRVSAPLPPHMVQTWNLLG 319
>gi|83950496|ref|ZP_00959229.1| ribosomal large subunit pseudouridine synthase C [Roseovarius
nubinhibens ISM]
gi|83838395|gb|EAP77691.1| ribosomal large subunit pseudouridine synthase C [Roseovarius
nubinhibens ISM]
Length = 346
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 162/364 (44%), Gaps = 60/364 (16%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H +G ++ C G+ V+ G++K +++ + + P+ + K
Sbjct: 22 HLGQGRIEKMC-RKGELRVDGGRVKSSHRLQVGQSVR-----IPPIPAPDDSEDKAAPPR 75
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
P ++ ++ +R V YRD I+ LNKPP +P++G +D LA A L +D +
Sbjct: 76 PRSRVS--DEDAAMIRAAVIYRDDHIIALNKPPGLPVQGGSKQTRHVDGLAEA-LRFDLD 132
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
E P+LVHRLD+++SG+L++ RT++ + LT F N K YWA
Sbjct: 133 EKPRLVHRLDKDTSGVLILARTRQMAADLTAAFRHRNTRKI---------------YWAA 177
Query: 307 VIGSP-----KEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMIN 361
V G P K G++ AP + K I + ++ A ++Y VL
Sbjct: 178 VAGVPLPRMGTVKYGLVKAPGHGKGGEGEKMLCIHPREVDNTPGAKHATSDYAVLENAGQ 237
Query: 362 GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYK 421
+W+ L P+T R HQLR H AE LG PIVGD KYG SG+
Sbjct: 238 RTAWMALVPVTGRTHQLRAHMAE-LGHPIVGDGKYG-----------------GSGQENL 279
Query: 422 LRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
DG Q G +S+ LHLH R L + P ++ L A +P HM +
Sbjct: 280 ---GDGWGAQLGGDVSRK--LHLHARSLTIRH--PATGAR------LHLTAPLPDHMART 326
Query: 482 WNLM 485
W+L
Sbjct: 327 WDLF 330
>gi|408380456|ref|ZP_11178040.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
albertimagni AOL15]
gi|407745669|gb|EKF57201.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
albertimagni AOL15]
Length = 329
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 155/332 (46%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++KT+ ++PG + +P V+ +K+ I S L + D+ + L R++ + D + V
Sbjct: 49 RVKTDARVQPGQVVRVPPMDVD---AKKTGPIASHDLK-HGDDHELLSRMLLHEDEKVFV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
LNKP + ++G ++ +D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 105 LNKPAGLAVQGGSGLNRHIDKMLEAWTSR-KGEKPRLVHRLDRDTSGVLVVARTRGAAQK 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K YW+LV G P++ + I L+K D+G R
Sbjct: 164 LTAAFRERDTKKI---------------YWSLVKGVPRKHEDKISTWLTKDQTDEGDRMR 208
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ G + + A+T YRV+ +W+E+ P T R HQLRVH +G PI+GD
Sbjct: 209 VC---RHGEDGADHAVTYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY FV P G V + LHLH R +
Sbjct: 265 KY--FVDDHNWDFP------------------------GGVQKR---LHLHARSID---- 291
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G L+ A +P HM +WNL+
Sbjct: 292 LP----HPNGG-RLKVTAPLPPHMVQTWNLLG 318
>gi|399036575|ref|ZP_10733609.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
gi|398065903|gb|EJL57515.1| pseudouridine synthase, RluA family [Rhizobium sp. CF122]
Length = 316
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 172/376 (45%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 6 WFKVHFPGLGFGPLQKLLRSGQVRVDGG----------------RVKSDTRVQPGQVVRV 49
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ +K +T +G + + + L+R+V + D ++VLNKP + ++G V
Sbjct: 50 PPLDVD---AKSKNTPIAGHDLKHGGDYELLQRMVLHEDDKVIVLNKPAGLAVQGGSGVT 106
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
++D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 107 RNIDKMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQKLTAAFRERDTKKT--- 162
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YW+LV G P++ + I L K DG R+ G + + A+
Sbjct: 163 ------------YWSLVRGVPRKHEDKISTWLVKEATADGDRMRV---AKHGEDGADHAI 207
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY F+ + P
Sbjct: 208 SYYRVLETAAQNLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY--FI-----EDPNW 259
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D+ P G +QK LHLH R++ D P+ LR
Sbjct: 260 DV------------PGG--IQK--------RLHLHARKI--DIPHPSGGR-------LRV 288
Query: 471 VASMPSHMKISWNLMS 486
A +P HM +WNL+
Sbjct: 289 SAPLPPHMVQTWNLLG 304
>gi|398353276|ref|YP_006398740.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii USDA 257]
gi|390128602|gb|AFL51983.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii USDA 257]
Length = 330
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 160/333 (48%), Gaps = 62/333 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLN-PNADEIDYLRRLVKYRDSAIL 213
++K++ ++PG I +P V+ + +K + P G + ++ + D L R+V + D+ ++
Sbjct: 49 RVKSDTRIQPGQTIRVPPLGVDAKETK---SGPIGGRDLRHSSDGDLLSRMVLHEDAKVI 105
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G V+ +D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 106 VLNKPAGLAVQGGSGVNRHIDKMLEAWTSQ-KGEKPRLVHRLDRDTSGVLVIARTRGAAQ 164
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F + + K YW+LV G P++++ + L K DG
Sbjct: 165 QLTAAFRERDTRKI---------------YWSLVKGVPRKREDRVSTWLVKEQTPDGDRM 209
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
RI G + + A++ YR++ SW+E+ P T R HQLRVH A +G PI+GD
Sbjct: 210 RIA---KHGDDGADHAISYYRIIEQAGQNLSWLEMEPYTGRTHQLRVHAAH-IGHPIIGD 265
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY F D+ T P G+ + LHLH R +
Sbjct: 266 PKY--F---------DADVNWTF--------PGGMQNR----------LHLHARSID--- 293
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G L+ A +P HM SWNL+
Sbjct: 294 -IP----HPNG-GRLKITAPLPPHMVQSWNLLG 320
>gi|384921230|ref|ZP_10021218.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
357]
gi|384464864|gb|EIE49421.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
357]
Length = 352
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 169/378 (44%), Gaps = 69/378 (18%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W+K +F H +G ++ C G+ V+ G+ K ++ G ++ +
Sbjct: 21 WLKRHF---------PHLGQGPIEKMC-RKGELRVDGGRCKASTRLSV------GQQVRI 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P + + ++ +P NA++++ ++ V ++D ++ +NKP +P +G
Sbjct: 65 P-PLPDPDEARAKALLPRTPPRVNAEDVELIQSCVLWKDDHVIAINKPAGLPTQGGSGQL 123
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D +A A L + +E P+LVHRLD+++SG+LL+ RT+E+ LT K
Sbjct: 124 RHVDGMADA-LRFGMDEKPRLVHRLDKDTSGVLLLARTREAAQALTAALRHKQTRKI--- 179
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL--LDDGKTERIILAQNSGL---EA 345
YWA+V G P G I L K G+ E+++ + E
Sbjct: 180 ------------YWAVVAGVPTPYLGEIRYGLVKARGHGKGGEAEKMVCVHPRDIGTTEG 227
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
++ A T Y L + + SW+ L PLT R HQLR H AE +G PI+GD KYG
Sbjct: 228 AKRAHTLYATLYRVASRASWVALEPLTGRTHQLRAHMAE-IGHPIIGDGKYG-------- 278
Query: 406 QMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGP 465
SG+ DG Q G V+SK LHLH R + ++ P
Sbjct: 279 ---------GSGQE---NMGDGWGAQLGGVISKK--LHLHARSMSFEH--------PRTR 316
Query: 466 DLLRFVASMPSHMKISWN 483
+ A +P HMK +W+
Sbjct: 317 KTITVTAPLPDHMKHTWD 334
>gi|296284584|ref|ZP_06862582.1| pseudouridylate synthase [Citromicrobium bathyomarinum JL354]
Length = 388
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 121/247 (48%), Gaps = 29/247 (11%)
Query: 157 KTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNP------NADEIDYLRRLVKYRDS 210
+T ++ GAR + +G++ + P+ P D+ R +V
Sbjct: 48 RTGQIRVDGARAKPDDRLTQGQVLRIPPGNPARAKTPPRRRELTEDQKAQARAMVIKETP 107
Query: 211 AILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKE 270
+VLNKPP + +G + +D L A + D P+LVHRLD+++SG+LL+ RT
Sbjct: 108 NAIVLNKPPGLATQGGSKTFSHVDGLLDAFVEGDGPR-PRLVHRLDKDTSGVLLIARTPG 166
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
S + + F+ + K YWALV+G P++ G I APL+K G
Sbjct: 167 SAAAFSKRFAGRSAKKV---------------YWALVVGVPEQHVGEIDAPLAKQPGTGG 211
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
+ + E Q A T YRV+ N +W+EL PLT R HQLRVHCA A+G PI
Sbjct: 212 EKMHV------DTEGGQPAKTRYRVVERAGNRAAWLELEPLTGRTHQLRVHCA-AMGHPI 264
Query: 391 VGDYKYG 397
VGD KYG
Sbjct: 265 VGDGKYG 271
>gi|338707762|ref|YP_004661963.1| RluA family pseudouridine synthase [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294566|gb|AEI37673.1| pseudouridine synthase, RluA family [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 370
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 111/204 (54%), Gaps = 23/204 (11%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
A E ++ + LV +RD +++NKPP + +G H +D L A L +D PKLVH
Sbjct: 86 TAAENEFAQSLVIHRDRDAIIVNKPPGLATQGGTKTHYHLDGLLDA-LQFDAVSRPKLVH 144
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLD+++SG+LL+ R+ + + FS ++ YWALV+G P
Sbjct: 145 RLDKDTSGVLLLARSANAAGYFSKSFS---------------GRTAHKVYWALVVGVPSI 189
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++G+I PL++ G E++ + + +G A T YR++ N W+EL+PLT
Sbjct: 190 EEGLIDLPLARQPGSGG--EKMHVDEENGATAK----TLYRIVERAGNAACWLELQPLTG 243
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQLR H + A+G PIVGD KYG
Sbjct: 244 RTHQLRAHLS-AIGFPIVGDGKYG 266
>gi|15965142|ref|NP_385495.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti 1021]
gi|334315929|ref|YP_004548548.1| RluA family pseudouridine synthase [Sinorhizobium meliloti AK83]
gi|384529100|ref|YP_005713188.1| RluA family pseudouridine synthase [Sinorhizobium meliloti BL225C]
gi|384536620|ref|YP_005720705.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti SM11]
gi|407720329|ref|YP_006839991.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti Rm41]
gi|418405277|ref|ZP_12978685.1| RluA family pseudouridine synthase [Sinorhizobium meliloti
CCNWSX0020]
gi|433613160|ref|YP_007189958.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti GR4]
gi|15074322|emb|CAC45968.1| Probable ribosomal large subunit pseudouridine synthase C
[Sinorhizobium meliloti 1021]
gi|333811276|gb|AEG03945.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti BL225C]
gi|334094923|gb|AEG52934.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti AK83]
gi|336033512|gb|AEH79444.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti SM11]
gi|359500766|gb|EHK73420.1| RluA family pseudouridine synthase [Sinorhizobium meliloti
CCNWSX0020]
gi|407318561|emb|CCM67165.1| ribosomal large subunit pseudouridine synthase C protein
[Sinorhizobium meliloti Rm41]
gi|429551350|gb|AGA06359.1| pseudouridine synthase, RluA family [Sinorhizobium meliloti GR4]
Length = 330
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 175/376 (46%), Gaps = 76/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G ++++ A + K++ ++PG I +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQIRVDGA----------------RAKSDTRIQPGQTIRI 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ + +K I L + D + L R+V + D+ ++VLNKP + ++G V+
Sbjct: 65 PPLGVDPKEAK-SGPIGGRDLRQSPDG-ELLSRMVLHEDAKVIVLNKPAGLAVQGGSGVN 122
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 123 RHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKT--- 178
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++++ I L K DG +R+ +A++ G + + A+
Sbjct: 179 ------------YWALVRGVPRKREDKISTWLVKEPTPDG--DRVRIAKH-GEDGADHAI 223
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YR++ +W+E+ P T R HQLRVH A +G PI+GD KY F
Sbjct: 224 SYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGDPKY--F---------EA 271
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D+ T P G+ + LHLH R + + P+G L+
Sbjct: 272 DVNWTF--------PGGMQNR----------LHLHARHIDIPH--------PNG-GRLKI 304
Query: 471 VASMPSHMKISWNLMS 486
A +P HM SWNL+
Sbjct: 305 TAPLPQHMVQSWNLLG 320
>gi|222148667|ref|YP_002549624.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
vitis S4]
gi|221735653|gb|ACM36616.1| ribosomal large subunit pseudouridine synthase C [Agrobacterium
vitis S4]
Length = 330
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 155/332 (46%), Gaps = 60/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++KT+ ++PG + +P V+ + K I S L +A + + L R++ + D + V
Sbjct: 49 RVKTDARVQPGQVVRVPPMDVDAKTPKS-GPIASHDLK-HAGDGELLARMLLHEDEKVFV 106
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
LNKP + ++G ++ +D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 107 LNKPAGLAVQGGSGLNRHIDQMLEAWTSKK-GEKPRLVHRLDRDTSGVLVVARTRGAAQK 165
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ I + K +DG R
Sbjct: 166 LTAAFRERDTKKT---------------YWALVKGVPRKHDDKISTWVVKEQTEDGDRMR 210
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G + + A++ YRVL +W+E+ P T R HQLR+H +G PI+GD
Sbjct: 211 I---ARHGEDGADHAVSYYRVLETAAQSLAWLEMEPYTGRTHQLRLHALH-IGHPIIGDP 266
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + P D P G VQK LHLH R + +
Sbjct: 267 KY-------YIDDPNWDF------------PGG--VQK--------RLHLHARHIDIPH- 296
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
PDG LR A +P HM +WNL+
Sbjct: 297 -------PDG-GRLRITAPLPPHMVQTWNLLG 320
>gi|374332189|ref|YP_005082373.1| RluA family pseudouridine synthase [Pseudovibrio sp. FO-BEG1]
gi|359344978|gb|AEV38352.1| pseudouridine synthase, RluA family [Pseudovibrio sp. FO-BEG1]
Length = 349
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 162/333 (48%), Gaps = 61/333 (18%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++ + + +E G I +P VE R + P ++D + + +++ + DS ++
Sbjct: 64 KRAEASTRLEAGQEIRIPPLGVELAADDRKNAKPRARKLVDSDR-EAIEQMMLFEDSHVM 122
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G + +D + A + + P+LVHRLDRE+SG+LL+ +T+ +
Sbjct: 123 VLNKPAGLAVQGGSGLKRHVDGMLDA-FTNQKGDKPRLVHRLDRETSGILLVAKTRRAAQ 181
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F N K YWA+V G PK +QG I L++ D+G+ E
Sbjct: 182 ELTKAFRHRNTRKI---------------YWAMVAGVPKPRQGRISTYLAR---DEGE-E 222
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
R+ +A++ G + +Q A++ Y V+ SW+ L+P+T R HQLR H A +G PI+GD
Sbjct: 223 RMRVARH-GDDEAQHAVSLYNVVEQSGQKLSWVTLKPVTGRTHQLRAHSAH-IGHPIIGD 280
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY F + W ++P G + +K LHL R +
Sbjct: 281 PKY--FNIQNW-ELP------------------------GGIQNK---LHLLARRI---- 306
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ P P G ++ A +P HM+ +WNL+
Sbjct: 307 VIP----HPSGNGVIDVSAPLPPHMQQTWNLLG 335
>gi|402826617|ref|ZP_10875794.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
LH128]
gi|402259851|gb|EJU10037.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas sp.
LH128]
Length = 426
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 107/201 (53%), Gaps = 24/201 (11%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
EI+ +V +D A +VLNKPP + +G + +D L A + + P+LVHRLD
Sbjct: 90 EIELADSMVLTQDRAAIVLNKPPGLATQGGSGMKEHVDGLLDAYV--EKGPRPRLVHRLD 147
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SG+LL+ RT S + + FS K YWALV+G P G
Sbjct: 148 KDTSGVLLIARTPGSAAFFSKRFSGRTAKKI---------------YWALVVGVPSINDG 192
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+I PL+K G E++ + + G Q A T YRV+ N +W+EL PLT R H
Sbjct: 193 MIELPLAKQPGTGG--EKMHVDEKEG----QTARTRYRVIDRAGNRAAWVELHPLTGRTH 246
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVH A A+G PIVGD KYG
Sbjct: 247 QLRVHMA-AIGHPIVGDGKYG 266
>gi|440226754|ref|YP_007333845.1| ribosomal large subunit pseudouridine synthase C [Rhizobium tropici
CIAT 899]
gi|440038265|gb|AGB71299.1| ribosomal large subunit pseudouridine synthase C [Rhizobium tropici
CIAT 899]
Length = 332
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 164/376 (43%), Gaps = 76/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++KT+ ++PG + +
Sbjct: 21 WFKVHFPGLGFGQLQKLLRSGQVRVDGG----------------RVKTDARVQPGQVVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ + K I S L +A + + L R++ + D + VLNKP + ++G +
Sbjct: 65 PPLDVDAKGPKS-GPIASNDLK-HAGDGELLARMLLHEDDKVYVLNKPAGLAVQGGSGLT 122
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 123 RHIDKMLEAWTSK-KGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKT--- 178
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YW+LV G P++ + I L K DG RI G E + A+
Sbjct: 179 ------------YWSLVKGVPRKHEDKISTWLVKEATADGDRMRIA---KHGEEGADHAI 223
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 224 SYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY-------------F 269
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G V + LHLH R + D P+ LR
Sbjct: 270 DDDPNWDFP-------------GGVQKR---LHLHARHI--DIPHPSGGR-------LRV 304
Query: 471 VASMPSHMKISWNLMS 486
A +P HM +WNL+
Sbjct: 305 TAPLPPHMVQTWNLLG 320
>gi|407788345|ref|ZP_11135477.1| ribosomal large subunit pseudouridine synthase C [Celeribacter
baekdonensis B30]
gi|407197626|gb|EKE67680.1| ribosomal large subunit pseudouridine synthase C [Celeribacter
baekdonensis B30]
Length = 348
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 165/383 (43%), Gaps = 83/383 (21%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W + F ++ I+ KG ++++ ++K+N + PG I +
Sbjct: 21 WFRKMFPQITQGNIEKMCRKGDIRVDGG----------------RVKSNTRVGPGMEIRV 64
Query: 171 P-----VSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKG 225
P + V R SG ADE ++ V Y+D ++VLNKP +P +G
Sbjct: 65 PPLPDQAAPVRDR---------SGDAISAADE-KLIQSCVIYKDDYVIVLNKPAGLPTQG 114
Query: 226 HLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKS 285
+D LA A L + E P+LVHRLD+++SG+L++ RT + LT F N
Sbjct: 115 GSKQTRHVDGLAEA-LKFGLEEKPRLVHRLDKDTSGVLILARTPAMATKLTEAFRHKNTR 173
Query: 286 KSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDD--GKTERIILAQNSGL 343
K YWALV G P G I L K G+ E++I +
Sbjct: 174 KI---------------YWALVAGVPVPYLGEIKYGLMKAGGHGARGEGEKMIAIHPRDM 218
Query: 344 EA---SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFV 400
A ++ A T Y L + + SW+ + P+T R HQLR H AE +G PI+GD KYG
Sbjct: 219 NANPDAKRAHTLYATLYRVGSRASWVAMEPITGRTHQLRAHMAE-IGHPIIGDGKYG--- 274
Query: 401 HRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSS 460
SG+ DG Q G ++SK LHLH R L ++
Sbjct: 275 --------------GSGQE---NLGDGWGAQLGGIISKK--LHLHARSLTFEH------- 308
Query: 461 KPDGPDLLRFVASMPSHMKISWN 483
P ++ A +P HM+ SW+
Sbjct: 309 -PVTHKVITVTAPLPEHMRNSWD 330
>gi|406989143|gb|EKE08954.1| Pseudouridine synthase [uncultured bacterium]
Length = 325
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 24/201 (11%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
E +++ ++ Y D +L+LNKPP + ++G S+D L + Y + P+LVHRLD
Sbjct: 94 ERKWIKGMILYEDGDLLILNKPPGLAVQGGTKQGKSLDTLL---IRYFEDAKPRLVHRLD 150
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SG+ ++ +T LT F + K+ YWALV G PK+K+G
Sbjct: 151 KDTSGVFIIAKTLPMARWLTLAFKERKVQKT---------------YWALVCGVPKKKEG 195
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I LSK G+ R+ E+ A T YR+L + + +EL P T R H
Sbjct: 196 SITLALSKKASVHGEKVRV------NTESGARATTYYRILETLGTKMALLELTPKTGRMH 249
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVHCAE L TPI+GD KYG
Sbjct: 250 QLRVHCAEGLKTPILGDGKYG 270
>gi|398380034|ref|ZP_10538152.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
gi|397721350|gb|EJK81898.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
Length = 317
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 166/377 (44%), Gaps = 78/377 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++KT+ ++PG + +
Sbjct: 6 WFKVHFPGLGFGQLQKLMRSGQVRVDGG----------------RVKTDARVQPGQVVRV 49
Query: 171 PVSMVEGRISKRYDTIPSGTLN-PNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
P V+ + K + P G + ++ + D L R++ + D + VLNKP + ++G +
Sbjct: 50 PPLDVDAKGPK---SGPIGNKDMKHSSDADLLARMLLHEDEKVFVLNKPAGLAVQGGSGL 106
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 107 TRHLDKMLEAWTSK-KGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKT-- 163
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
YW+LV G P++ + I L K DG RI G + + A
Sbjct: 164 -------------YWSLVKGVPRKHEDKISTWLVKEATADGDRMRIA---KHGEDGADHA 207
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR 409
+T YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 208 ITYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY------------- 253
Query: 410 VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLR 469
D + P G V ++ LHLH R + + P+G LR
Sbjct: 254 FDDDHNWDFP-------------GGVQNR---LHLHARHIDIPH--------PNG-GRLR 288
Query: 470 FVASMPSHMKISWNLMS 486
A +P HM +WNL+
Sbjct: 289 ITAPLPPHMVQTWNLLG 305
>gi|89053115|ref|YP_508566.1| ribosomal large subunit pseudouridine synthase C [Jannaschia sp.
CCS1]
gi|88862664|gb|ABD53541.1| ribosomal large subunit pseudouridine synthase C [Jannaschia sp.
CCS1]
Length = 354
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 172/384 (44%), Gaps = 74/384 (19%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM-GDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
W + F V I+ KG ++++ + ++ +E GQM +R + +P A
Sbjct: 21 WFRRIFPHVPQGRIEKMCRKGEIRVDGGRVKSNTRLEVGQM--VRVPPLPDAADPKAD-- 76
Query: 170 LPVSMVEG--RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHL 227
P + V RIS +ADE +R V YRD I+ +NKP +P +G
Sbjct: 77 -PANWVNNASRIS-------------DADE-KMIRAAVIYRDDHIIAINKPAGLPTQGGT 121
Query: 228 PVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKS 287
+D LA A L + + P+LVHRLD+++SG+LLM RT+ LT D + +S
Sbjct: 122 GQSRHVDGLAEA-LKFGLEDKPRLVHRLDKDTSGVLLMARTRMGAKALT----DAFRLRS 176
Query: 288 LSKAWNDACEAMYQRYWALVIGSP-----KEKQGIIHAPLSKVLLDDGKTERIILAQNSG 342
K YWA V GSP K G++ AP ++ K + + + +
Sbjct: 177 TRKI-----------YWAAVAGSPLPRMGTIKLGLVKAPGHGRGGENEKMRAVPVDEIAQ 225
Query: 343 LEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHR 402
++ ++ A T+Y V+ + W L P+T R HQLR H AE +G PI+GD KYG
Sbjct: 226 VDGAKRAETDYAVMSNLGGRVCWCALVPITGRTHQLRAHMAE-IGHPIIGDGKYG----- 279
Query: 403 RWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKP 462
SG+ DG Q G +S+ LHLH R L + P ++
Sbjct: 280 ------------GSGQE---NLGDGWGAQLGGEISRK--LHLHARSLSFRH--PMTGAQ- 319
Query: 463 DGPDLLRFVASMPSHMKISWNLMS 486
+ VA +P HM +W+ +
Sbjct: 320 -----VNLVAPLPEHMAKTWDTLG 338
>gi|376274261|ref|YP_005114700.1| RluA family pseudouridine synthase [Brucella canis HSK A52141]
gi|363402828|gb|AEW13123.1| pseudouridine synthase, RluA family protein [Brucella canis HSK
A52141]
Length = 331
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 136/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 89 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 147
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 148 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 192
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 193 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 249
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + V + W+ P G+ +
Sbjct: 250 RTHQLRVHAA-YIGHPIIGDPKY-FEVDQNWE------------------FPGGIQKR-- 287
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 288 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 323
>gi|254470362|ref|ZP_05083766.1| ribosomal large subunit pseudouridine synthase C [Pseudovibrio sp.
JE062]
gi|211960673|gb|EEA95869.1| ribosomal large subunit pseudouridine synthase C [Pseudovibrio sp.
JE062]
Length = 349
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 162/333 (48%), Gaps = 61/333 (18%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++ + + +E G I +P VE R + P ++D + + +++ + DS ++
Sbjct: 64 KRAEASTRLEAGQEIRIPPLGVELAADDRKNAKPRARKLVDSDR-EAIEQMMLFEDSHVM 122
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G + +D + A + + P+LVHRLDRE+SG+LL+ +T+ +
Sbjct: 123 VLNKPAGLAVQGGSGLKRHVDGMLDA-FTNQKGDKPRLVHRLDRETSGILLVAKTRRAAQ 181
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F N K YWA+V G PK +QG I L++ D+G+ E
Sbjct: 182 ELTKAFRHRNTRKI---------------YWAMVAGVPKPRQGRISTYLAR---DEGE-E 222
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
R+ +A++ G + +Q A++ Y V+ +W+ L+P+T R HQLR H A +G PI+GD
Sbjct: 223 RMRVARH-GDDEAQHAVSLYNVVEQSGQKLAWVTLKPVTGRTHQLRAHSAH-IGHPIIGD 280
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY F + W ++P G + +K LHL R +
Sbjct: 281 PKY--FNIQNW-ELP------------------------GGIQNK---LHLLARRI---- 306
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ P P G ++ A +P HM+ +WNL+
Sbjct: 307 VIP----HPSGNGVIDVSAPLPPHMQQTWNLLG 335
>gi|161618953|ref|YP_001592840.1| RluA family pseudouridine synthase [Brucella canis ATCC 23365]
gi|260566460|ref|ZP_05836930.1| pseudouridine synthase [Brucella suis bv. 4 str. 40]
gi|261754961|ref|ZP_05998670.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
gi|161335764|gb|ABX62069.1| pseudouridine synthase, RluA family [Brucella canis ATCC 23365]
gi|260155978|gb|EEW91058.1| pseudouridine synthase [Brucella suis bv. 4 str. 40]
gi|261744714|gb|EEY32640.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
Length = 326
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 136/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 84 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 142
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 143 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 187
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 188 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 244
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + V + W+ P G+ +
Sbjct: 245 RTHQLRVHAA-YIGHPIIGDPKY-FEVDQNWE------------------FPGGIQKR-- 282
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 283 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 318
>gi|452752881|ref|ZP_21952620.1| Ribosomal large subunit pseudouridine synthase C [alpha
proteobacterium JLT2015]
gi|451959703|gb|EMD82120.1| Ribosomal large subunit pseudouridine synthase C [alpha
proteobacterium JLT2015]
Length = 395
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 138/286 (48%), Gaps = 63/286 (22%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+I++ R LV ++D+ +V+NKPP + +G +D L A L +D +E PKLVHRL
Sbjct: 90 DQIEFARSLVIHKDAHAIVINKPPGLATQGGTGQKAHVDGLLDA-LKFDRDERPKLVHRL 148
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG+LL+ RT + + + FS K YWA+V+G P+
Sbjct: 149 DKDTSGVLLLARTARAAAHFSKAFSGRTARKI---------------YWAIVMGVPEIPD 193
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G I PL+K G E++ + Q G Q A + YR + N +W+EL+PLT R
Sbjct: 194 GRIDLPLAKQPGTGG--EKMHVDQEGG----QRAASRYRRIDRAANRAAWLELQPLTGRT 247
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH EA+G PIVGD KYG GK L G +
Sbjct: 248 HQLRVHM-EAIGHPIVGDGKYG-------------------GKDSFL---------TGGI 278
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
K LHLH R LK + KPDG +L +A P H S
Sbjct: 279 SRK---LHLHARRLKIE--------KPDG-GVLNVIAEPPEHFAAS 312
>gi|312114370|ref|YP_004011966.1| pseudouridine synthase [Rhodomicrobium vannielii ATCC 17100]
gi|311219499|gb|ADP70867.1| pseudouridine synthase, RluA family [Rhodomicrobium vannielii ATCC
17100]
Length = 326
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 167/381 (43%), Gaps = 87/381 (22%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W+K + + +++Q G V+++ ++K + + G + +
Sbjct: 20 WLKKNYPTLPHTLVQKLVRTGQVRVDGG----------------RVKADSRLSTGQEVRV 63
Query: 171 PVSMVEGRISKRYDTIPSGTLNP-----NADEIDYLRRLVKYRDSAILVLNKPPKVPLKG 225
P E + P +L P AD D++ R++ + + + +LNKP + ++G
Sbjct: 64 PTHFAE------PENAPQPSLKPPPGLSKADR-DFIERMIVFENDEMFILNKPFGIAVQG 116
Query: 226 HLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKS 285
+D L A E P+LVHRLDR+++G+L + + +++ + L LF ++
Sbjct: 117 GTKTTRHIDGLLAGMADRFGGERPRLVHRLDRDTTGILAVAKDRQTAARLGRLF----QT 172
Query: 286 KSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEA 345
+S+ K YWA+ G PK QG + A L K DG +R+ A+ E
Sbjct: 173 RSVQKI-----------YWAITRGIPKPTQGKVEAALVKASGPDG--DRVRKARPGEQEL 219
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
+Q A T Y V+ N +W+ L+P+T R+HQLR H + LGTPI+GD KYG
Sbjct: 220 AQHATTFYSVIDRAAN-MAWVSLKPVTGRQHQLRAHM-DILGTPILGDQKYG-------- 269
Query: 406 QMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGP 465
DG ++ ++ K LHLH R L + P L
Sbjct: 270 --------------------DGTEIPIENIERK---LHLHARRLTLKD--PKLGE----- 299
Query: 466 DLLRFVASMPSHMKISWNLMS 486
+ A +PSH+ ++ L+
Sbjct: 300 --IDISAPLPSHIAQTFELLG 318
>gi|114771239|ref|ZP_01448659.1| ribosomal large subunit pseudouridine synthase C [Rhodobacterales
bacterium HTCC2255]
gi|114548164|gb|EAU51051.1| ribosomal large subunit pseudouridine synthase C [Rhodobacterales
bacterium HTCC2255]
Length = 348
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 158/353 (44%), Gaps = 59/353 (16%)
Query: 143 SFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEG---RISKRYDT--IPSGTLNPNADE 197
+F E GQ + + + E G+R+ + G R+ DT +P T +
Sbjct: 25 TFPELGQGRIEKMCRKGECRVDGSRVKASTRLSVGQTVRVPPLPDTKDMPRDTATAKITK 84
Query: 198 ID--YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D +R V Y+D I+ +NKP + ++G +D L+AA L +D PKLVHRL
Sbjct: 85 ADAQMIRDAVLYKDDYIIAINKPAGLAVQGGSGQMRHVDGLSAA-LKFDLENKPKLVHRL 143
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG+LL+ RT + S LT F +S+ K YWA V G P K
Sbjct: 144 DKDTSGVLLLARTGLAASGLTKAF----QSRETRKI-----------YWAAVAGCPHPKI 188
Query: 316 GIIHAPLSKVLLD--DGKTERIIL---AQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
G I L K +G E++ ++ + + ++ A T+Y VL + SW+ L P
Sbjct: 189 GTIKYGLIKAGGHGPNGSGEKMQCIHPSEVTDMPDAKHATTDYTVLEDVGKRASWVALVP 248
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDV 430
+T R HQLR H AE LG PIVGD KYG + + G DG
Sbjct: 249 ITGRTHQLRAHMAE-LGNPIVGDGKYG------------TNTQTNDG--------DGWGA 287
Query: 431 QKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWN 483
Q G +S+ +HLH R + + P + A +P HM+ +W
Sbjct: 288 QLGGDISR--KMHLHARSI--------TFTHPITKKEIHITAELPDHMEKTWT 330
>gi|222086089|ref|YP_002544621.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
gi|221723537|gb|ACM26693.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
Length = 332
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 166/377 (44%), Gaps = 78/377 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++KT+ ++PG + +
Sbjct: 21 WFKVHFPGLGFGQLQKLMRSGQVRVDGG----------------RVKTDARVQPGQIVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLN-PNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
P V+ + K + P G + ++ + D L R++ + D + VLNKP + ++G +
Sbjct: 65 PPLDVDAKGPK---SGPIGNKDMKHSSDADLLARMLLHEDEKVFVLNKPAGLAVQGGSGL 121
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 122 TRHLDKMLEAWTSK-KGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKT-- 178
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
YW+LV G P++ + I L K DG RI G + + A
Sbjct: 179 -------------YWSLVKGVPRKHEDKISTWLVKEATADGDRMRIA---KHGEDGADHA 222
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR 409
+T YRVL +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 223 ITYYRVLETAAQSLAWLEMEPYTGRTHQLRVHALH-MGHPIIGDPKY------------- 268
Query: 410 VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLR 469
D + P G V ++ LHLH R + P P+G LR
Sbjct: 269 FDDDHNWDFP-------------GGVQNR---LHLHARHID----IP----HPNG-GRLR 303
Query: 470 FVASMPSHMKISWNLMS 486
A +P HM +WNL+
Sbjct: 304 ITAPLPPHMVQTWNLLG 320
>gi|52430461|ref|YP_089633.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|376280674|ref|YP_005154680.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
VBI22]
gi|384224668|ref|YP_005615832.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|47524242|gb|AAT34905.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|343382848|gb|AEM18340.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
1330]
gi|358258273|gb|AEU06008.1| ribosomal large subunit pseudouridine synthase C [Brucella suis
VBI22]
Length = 326
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 152/332 (45%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
+ K + ++ G + +P V+ K D + + T+ N + D L +++ Y D I V
Sbjct: 49 RAKADTRIQAGQAVRIPPLGVD---EKAADPMTAKTIR-NQQDGDVLSQMLLYEDPKIFV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V +D + A S E P+LVHR+DR++SG+L++ RT+ +
Sbjct: 105 FNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVHRIDRDTSGVLVVARTRGAAQA 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++++ I L K DG R
Sbjct: 164 LTASFRERDTKKT---------------YWALVKGVPRKREDKISTWLVKEQTPDGDKMR 208
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ G S A++ YR++ N +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 209 VC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTGRTHQLRVHAA-YIGHPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + + W+ P G+ + LHLH R ++ N
Sbjct: 265 KY-FEADQNWE------------------FPGGIQKR----------LHLHARRIRIPN- 294
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P G ++ A +P HM SWNL+
Sbjct: 295 -------PSG-GIIDVTAPLPPHMVQSWNLLG 318
>gi|294852409|ref|ZP_06793082.1| ribosomal large subunit pseudouridine synthase C [Brucella sp. NVSL
07-0026]
gi|294820998|gb|EFG37997.1| ribosomal large subunit pseudouridine synthase C [Brucella sp. NVSL
07-0026]
Length = 331
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 136/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 89 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 147
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 148 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 192
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR+L N +W+E+ P T
Sbjct: 193 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRILEKAGNNLAWLEMEPYTG 249
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 250 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 287
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ +A +P HM SWNL+
Sbjct: 288 --------LHLHARRIRIPN--------PSG-GIIDVMAPLPPHMVQSWNLLG 323
>gi|144899540|emb|CAM76404.1| ribosomal large subunit pseudouridine synthase C [Magnetospirillum
gryphiswaldense MSR-1]
Length = 333
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 144/289 (49%), Gaps = 45/289 (15%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K ++ V +++ G V+++ ++ K N+ + PG I +
Sbjct: 21 WFKRHYPTVGHGLLEKWLRTGQVRVDG----------------KRAKANQRLSPGLHIRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADE--IDYLRRLVKYRDSAILVLNKPPKVPLKGHLP 228
P + EG K P P DE LR V Y D ++ LNKP + ++G
Sbjct: 65 P-PVPEGEAPK---ANPE-NRRPAVDEKIARMLRDAVLYMDDDVIALNKPAGIAVQGGTG 119
Query: 229 VHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSL 288
+ AL +D ++ P+LVHRLD+++SG+LL+GR+ + + L F KS++
Sbjct: 120 TGDKHIDAWLDALMFDRDDRPRLVHRLDKDTSGVLLLGRSANAAAKLAAAF----KSRAA 175
Query: 289 SKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQE 348
K C YWALV+G PK +QG I A L+K+ G E++ + ++ G +
Sbjct: 176 RK-----C------YWALVVGVPKLRQGRIDAALAKLPGRAG--EKMAVDEDEG----KR 218
Query: 349 AMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
A+T YRV+ + +W+E+ P T R HQLR H A +GTPI+GD KYG
Sbjct: 219 AVTWYRVVDNALRKAAWLEMEPRTGRTHQLRAHTA-LMGTPIMGDGKYG 266
>gi|359791922|ref|ZP_09294754.1| RluA family pseudouridine synthase [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359251985|gb|EHK55285.1| RluA family pseudouridine synthase [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 328
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 156/332 (46%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
+ K + +EPG I +P V+ K + + T+ N D+ D L +++ Y D + V
Sbjct: 49 RAKADTRVEPGQMIRIPPLGVD---QKGAGPLTAKTMR-NQDDGDVLSQMLLYEDPKVFV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V +D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 105 FNKPAGLAVQGGSGVVRHVDDMLEAWRS-SKGEKPRLVHRLDRDTSGVLVVARTRLAAMK 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
L F + K+ YWALV G PK+++ I L K DG +R
Sbjct: 164 LAEAFRGRDAKKT---------------YWALVKGVPKKREDKISTWLIKEPTPDG--DR 206
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ +AQ+ G + + A++ YR+L SW+E+ P T R HQLRVH A +G PI+GD
Sbjct: 207 VRVAQH-GEKGADHAVSYYRILEQAGQTMSWLEMEPHTGRTHQLRVHAAH-IGCPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY E + + P G+ + LHLH R ++ +
Sbjct: 265 KY---------------FEADTNWDF----PGGVQNR----------LHLHARRIRIPH- 294
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
PD ++ A MP HM+ SWNL+
Sbjct: 295 -------PD-KGVIDVTAPMPPHMRQSWNLIG 318
>gi|339018077|ref|ZP_08644220.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter tropicalis NBRC 101654]
gi|338752854|dbj|GAA07524.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter tropicalis NBRC 101654]
Length = 327
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 131/271 (48%), Gaps = 32/271 (11%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H +G +Q C G VE ++++ + ++PG + +P I K
Sbjct: 27 HLTQGALQKLC-RTGQIRVEG------KRVEASTRLQPGQSVRVPP------IPKAVKPA 73
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
P + + ++ +V Y+D ++VLNKP + ++G + +D + + +
Sbjct: 74 PDTPRQLDERLVREIKGMVLYQDKQVIVLNKPAGLAVQGGPGITKHVDMMLDGLRAEADD 133
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
P+LVHR+DR++SGLLL+ RT + L F + K+ YWA+
Sbjct: 134 PRPRLVHRIDRDTSGLLLLARTPGVAAKLAEAFRGRDVKKT---------------YWAV 178
Query: 307 VIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
V+G P G I PL+++ I++A + E +Q A + Y V+ SW+
Sbjct: 179 VVGRPDPLAGEIDQPLARL---GAGANAIMVAADRKDEDAQYARSTYEVVDAAARKFSWL 235
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
L PLT R HQLRVHC E+LGTPI+GD KYG
Sbjct: 236 ALSPLTGRTHQLRVHC-ESLGTPILGDPKYG 265
>gi|421852911|ref|ZP_16285594.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|371478910|dbj|GAB30797.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 328
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 137/272 (50%), Gaps = 35/272 (12%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLP-VSMVEGRISKRYDT 185
H +G +Q C G VE ++++ + +EPG + +P + M +K
Sbjct: 27 HLTQGALQKLC-RTGQIRVEG------KRVEASTRLEPGQTVRVPPIPMA----AKPARD 75
Query: 186 IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
+P A EI R++V Y+D ++VLNKP + ++G + +D + L +
Sbjct: 76 VPRPLDEKLAREI---RKMVVYQDKHVIVLNKPAGLAVQGGPGITKHVDMMLDG-LREED 131
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
+ P+LVHR+D+++SGLLL+ RT + L F + + + K YWA
Sbjct: 132 DPRPRLVHRIDKDTSGLLLLARTPGVAAKLAASF----RGRDVKKI-----------YWA 176
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
+V+G P G I PL+++ G I +A + +Q A + Y VL SW
Sbjct: 177 VVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSW 233
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+EL PLT R HQLRVHC E+LGTPI+GD KYG
Sbjct: 234 LELSPLTGRTHQLRVHC-ESLGTPILGDPKYG 264
>gi|421849506|ref|ZP_16282485.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus NBRC 101655]
gi|371459693|dbj|GAB27688.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus NBRC 101655]
Length = 328
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 137/272 (50%), Gaps = 35/272 (12%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLP-VSMVEGRISKRYDT 185
H +G +Q C G VE ++++ + +EPG + +P + M +K
Sbjct: 27 HLTQGALQKLC-RTGQIRVEG------KRVEASTRLEPGQTVRVPPIPMA----AKPARD 75
Query: 186 IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
+P A EI R++V Y+D ++VLNKP + ++G + +D + L +
Sbjct: 76 VPRPLDEKLAREI---RKMVVYQDKHVIVLNKPAGLAVQGGPGITKHVDMMLDG-LREED 131
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
+ P+LVHR+D+++SGLLL+ RT + L F + + + K YWA
Sbjct: 132 DPRPRLVHRIDKDTSGLLLLARTPGVAAKLAASF----RGRDVKKI-----------YWA 176
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
+V+G P G I PL+++ G I +A + +Q A + Y VL SW
Sbjct: 177 VVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSW 233
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+EL PLT R HQLRVHC E+LGTPI+GD KYG
Sbjct: 234 LELSPLTGRTHQLRVHC-ESLGTPILGDPKYG 264
>gi|452825056|gb|EME32055.1| ribosomal large subunit pseudouridine synthase C [Galdieria
sulphuraria]
Length = 358
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 127/282 (45%), Gaps = 61/282 (21%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
V Y+D+ ++V+NKPP + +G + +S ALS D E PKLVHRLD+E SG LL
Sbjct: 133 VLYKDTNLMVINKPPLLACQGGSGLRDSHLGTLLPALSLDNEEPPKLVHRLDKEVSGTLL 192
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ R + L LF K YWALVIG+P QG I +
Sbjct: 193 LARNSVAAKNLALLFQQRQVKKL---------------YWALVIGNPLPTQGEIRKAV-- 235
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
DGKT A+T YRV+ + + +W+EL P+T RK QLR+HCA+
Sbjct: 236 ----DGKT----------------AITRYRVVEKLHSVAAWLELEPITGRKRQLRLHCAQ 275
Query: 385 ALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHL 444
L PI GD K+ + + + G + LRRP G +HL
Sbjct: 276 VLNCPIFGDEKFPFD-----RLEENTHLVAYQGLSHLLRRPKG--------------IHL 316
Query: 445 HCRELKSDNLFPTLSSKPDGPDLLRFV-ASMPSHMKISWNLM 485
H + FP + + + V A +P HM+ +WN +
Sbjct: 317 HAYSIS----FPNIETLDKPQKTWKTVTAPLPLHMENTWNTL 354
>gi|163745572|ref|ZP_02152932.1| ribosomal large subunit pseudouridine synthase C [Oceanibulbus
indolifex HEL-45]
gi|161382390|gb|EDQ06799.1| ribosomal large subunit pseudouridine synthase C [Oceanibulbus
indolifex HEL-45]
Length = 348
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 168/381 (44%), Gaps = 79/381 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPG--ARI 168
W K F ++ N+GL++ C G+ V+ G ++K N +E G R+
Sbjct: 21 WFKRMFPQI---------NQGLIEKMC-RKGEIRVDGG------RVKANTRLEAGQEVRV 64
Query: 169 FLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHL- 227
KR T +AD +R V YRD ++ LNKPP + ++G
Sbjct: 65 PPLPDSAPPPPPKR-------TRITDAD-AKMIRNCVIYRDEHVIALNKPPGLAVQGGSG 116
Query: 228 PVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKS 287
+DAL+ A L +D E P+LVHRLDR++SG+LL+ RT+ + LT K
Sbjct: 117 QADRHVDALSEA-LIFDAEEKPRLVHRLDRDTSGVLLLARTRLAAKALTAAMRHRETRKI 175
Query: 288 LSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLD--DGKTERIILAQNSGLEA 345
YWA+V G P G + L K G+ E++I ++A
Sbjct: 176 ---------------YWAIVAGVPTPYLGEVKYGLVKAGGHGRSGEGEKMIAVHPRDMDA 220
Query: 346 S---QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHR 402
+ + A T Y L + + SW+ + P+T R HQLR H AE +G PIVGD KYG
Sbjct: 221 TPGAKRAHTLYATLFRVGSRASWVAMEPVTGRTHQLRAHMAE-IGHPIVGDGKYG----- 274
Query: 403 RWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKP 462
SG+ DG Q G ++SK LHLH R ++ ++ + KP
Sbjct: 275 ------------GSGQE---NLGDGWGAQLGGIISK--KLHLHARMMRFEHPH---TRKP 314
Query: 463 DGPDLLRFVASMPSHMKISWN 483
+ A +P HM SW+
Sbjct: 315 -----VTITAELPEHMAHSWD 330
>gi|227821788|ref|YP_002825758.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii NGR234]
gi|227340787|gb|ACP25005.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii NGR234]
Length = 330
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 158/333 (47%), Gaps = 62/333 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLN-PNADEIDYLRRLVKYRDSAIL 213
+ K++ ++PG I +P V+ + +K T P G + ++ + D L R+V + D+ ++
Sbjct: 49 RAKSDTRVQPGQTIRVPPLGVDAKDTK---TGPIGGRDLRHSSDGDLLSRMVLHEDAKVI 105
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G V +D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 106 VLNKPAGLAVQGGSGVSRHIDKMLEAWTSQ-KGEKPRLVHRLDRDTSGVLVIARTRGAAQ 164
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F + + K YW+LV G P++++ I L K DG
Sbjct: 165 QLTAAFRERDTRKI---------------YWSLVKGVPRKREDRISTWLVKEQTPDGDRM 209
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
RI G + + A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 210 RIA---KHGDDGADHAISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGD 265
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY F D+ T P G+ + LHLH R +
Sbjct: 266 PKY--F---------EADVNWTF--------PGGIQNR----------LHLHARCID--- 293
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G L+ A +P HM SWNL+
Sbjct: 294 -IP----HPNG-GRLKVTAPLPPHMVQSWNLLG 320
>gi|407976912|ref|ZP_11157807.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
indicus C115]
gi|407427639|gb|EKF40328.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
indicus C115]
Length = 328
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 163/377 (43%), Gaps = 80/377 (21%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM-GDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
W K +F + +Q G V+++ D+ V+ GQM I ++ +
Sbjct: 21 WFKVHFPGLGFGHLQKLLRSGQVRVDGGRAKADTRVQAGQMVRIPPLEVDR--------- 71
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
K + + + +L D + L +++ Y D + V NKP + ++G V
Sbjct: 72 -----------KGNENLTAHSLRSTGDG-EALSQMLIYEDPKVYVFNKPAGLAVQGGSGV 119
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
+ +D + A E P+LVHR+DR++SG+L++ RT+++ LT F + K+
Sbjct: 120 NRHVDGMLEA-WRNKKGEKPRLVHRIDRDTSGVLVVARTRQAAVKLTEAFRARDTKKT-- 176
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
YWALV G PK+ +G I L K DG R+ G S A
Sbjct: 177 -------------YWALVKGVPKKPEGRISTWLVKEQTPDGDRMRVA---KHGEPDSDHA 220
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR 409
++ YR++ SW+E+ P T R HQLRVH A +G PI+GD KY + + W+
Sbjct: 221 VSNYRLIEQAATNLSWLEMEPYTGRTHQLRVHAAH-IGCPIIGDPKY-FEADQNWE---- 274
Query: 410 VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLR 469
P GL + LHLH R + + P PDG +
Sbjct: 275 --------------FPGGLQKR----------LHLHARRI----VIP----HPDG-GRID 301
Query: 470 FVASMPSHMKISWNLMS 486
A +P HM+ SWNL+
Sbjct: 302 VTAPLPPHMRQSWNLLG 318
>gi|163843268|ref|YP_001627672.1| RluA family pseudouridine synthase [Brucella suis ATCC 23445]
gi|163673991|gb|ABY38102.1| pseudouridine synthase, RluA family [Brucella suis ATCC 23445]
Length = 326
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 84 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 142
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 143 RIDRDTSGVLVLARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 187
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 188 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 244
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 245 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 282
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 283 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 318
>gi|148560154|ref|YP_001258940.1| ribosomal large subunit pseudouridine synthase C [Brucella ovis
ATCC 25840]
gi|148371411|gb|ABQ61390.1| ribosomal large subunit pseudouridine synthase C [Brucella ovis
ATCC 25840]
Length = 318
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 76 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSTK-GEKPRLVH 134
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 135 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 179
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 180 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 236
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 237 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 274
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 275 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 310
>gi|384211367|ref|YP_005600449.1| RluA family pseudouridine synthase [Brucella melitensis M5-90]
gi|384408473|ref|YP_005597094.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M28]
gi|384445066|ref|YP_005603785.1| RluA family pseudouridine synthase [Brucella melitensis NI]
gi|326409020|gb|ADZ66085.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M28]
gi|326538730|gb|ADZ86945.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M5-90]
gi|349743057|gb|AEQ08600.1| pseudouridine synthase, RluA family [Brucella melitensis NI]
Length = 331
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 89 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 147
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 148 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 192
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 193 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 249
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 250 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 287
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 288 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 323
>gi|225852505|ref|YP_002732738.1| RluA family pseudouridine synthase [Brucella melitensis ATCC 23457]
gi|256264005|ref|ZP_05466537.1| pseudouridine synthase [Brucella melitensis bv. 2 str. 63/9]
gi|256369422|ref|YP_003106930.1| ribosomal large subunit pseudouridine synthase C [Brucella microti
CCM 4915]
gi|260564005|ref|ZP_05834491.1| pseudouridine synthase [Brucella melitensis bv. 1 str. 16M]
gi|261213987|ref|ZP_05928268.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|261218659|ref|ZP_05932940.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261222167|ref|ZP_05936448.1| pseudouridine synthase [Brucella ceti B1/94]
gi|261314272|ref|ZP_05953469.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261317634|ref|ZP_05956831.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|261321843|ref|ZP_05961040.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|261758188|ref|ZP_06001897.1| pseudouridine synthase [Brucella sp. F5/99]
gi|265988669|ref|ZP_06101226.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
gi|265991083|ref|ZP_06103640.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|265994920|ref|ZP_06107477.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|265998132|ref|ZP_06110689.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|340790618|ref|YP_004756083.1| ribosomal large subunit pseudouridine synthase C [Brucella
pinnipedialis B2/94]
gi|225640870|gb|ACO00784.1| pseudouridine synthase, RluA family protein [Brucella melitensis
ATCC 23457]
gi|255999582|gb|ACU47981.1| ribosomal large subunit pseudouridine synthase C [Brucella microti
CCM 4915]
gi|260154021|gb|EEW89113.1| pseudouridine synthase [Brucella melitensis bv. 1 str. 16M]
gi|260915594|gb|EEX82455.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|260920751|gb|EEX87404.1| pseudouridine synthase [Brucella ceti B1/94]
gi|260923748|gb|EEX90316.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261294533|gb|EEX98029.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|261296857|gb|EEY00354.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|261303298|gb|EEY06795.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261738172|gb|EEY26168.1| pseudouridine synthase [Brucella sp. F5/99]
gi|262552600|gb|EEZ08590.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|262766033|gb|EEZ11822.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|263001867|gb|EEZ14442.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|263094149|gb|EEZ18071.1| pseudouridine synthase [Brucella melitensis bv. 2 str. 63/9]
gi|264660866|gb|EEZ31127.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
gi|340559077|gb|AEK54315.1| ribosomal large subunit pseudouridine synthase C [Brucella
pinnipedialis B2/94]
Length = 326
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 84 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 142
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 143 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 187
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 188 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 244
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 245 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 282
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 283 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 318
>gi|254500715|ref|ZP_05112866.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
gi|222436786|gb|EEE43465.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
Length = 340
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 60/333 (18%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++ ++N + G I +P VE + + P T AD+ + ++ Y D+ ++
Sbjct: 48 KRAESNTRIAKGQIIRIPPLGVELPADDKKNARPKST-KLIADDKKAIEDMLLYEDNQVM 106
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G + +D + A N+ P+LVHRLDRE+SG++L+ RT+++
Sbjct: 107 VLNKPAGLAVQGGSGLKRHLDGMLDAFTDQKGNK-PRLVHRLDRETSGIILVARTRQAAQ 165
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F N K YW ++ G PK QG I S L D + E
Sbjct: 166 ELTKAFRHRNTRKV---------------YWTILAGVPKPHQGRI----STFLARDEEEE 206
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
R+ + + G + +Q A++ Y V SW+ ++P+T R HQLR H A +G PI+GD
Sbjct: 207 RMQVVRQGGADDAQHAVSLYSVFEKSGQKLSWVTMKPVTGRTHQLRAHAAH-IGHPIIGD 265
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY F W ++P G + ++ LHL R +
Sbjct: 266 DKY--FNIENW-ELP------------------------GGIQNR---LHLLARRI---- 291
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ P P G + A +P HM+ +WNL+
Sbjct: 292 VIP----HPSGHGKIDVSAPLPPHMQQTWNLLG 320
>gi|261752304|ref|ZP_05996013.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
gi|261742057|gb|EEY29983.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
Length = 326
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 84 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 142
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 143 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 187
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 188 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 244
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 245 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 282
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 283 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 318
>gi|265984067|ref|ZP_06096802.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306838360|ref|ZP_07471205.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
gi|306843875|ref|ZP_07476470.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
gi|264662659|gb|EEZ32920.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306275630|gb|EFM57354.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
gi|306406500|gb|EFM62734.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
Length = 326
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 84 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 142
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 143 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 187
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 188 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 244
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 245 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 282
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 283 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 318
>gi|329114604|ref|ZP_08243363.1| Ribosomal large subunit pseudouridine synthase C [Acetobacter
pomorum DM001]
gi|326696084|gb|EGE47766.1| Ribosomal large subunit pseudouridine synthase C [Acetobacter
pomorum DM001]
Length = 328
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 137/272 (50%), Gaps = 35/272 (12%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLP-VSMVEGRISKRYDT 185
H +G +Q C G VE ++++ + +EPG + +P + M +K
Sbjct: 27 HLTQGALQKLC-RTGQIRVEG------KRVEASTRLEPGQTVRVPPIPMA----AKPARD 75
Query: 186 IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
+P A EI R++V Y+D ++VLNKP + ++G + +D + L +
Sbjct: 76 VPRPLDEKLAREI---RKMVVYQDKHVIVLNKPAGLAVQGGPGITKHIDMMLDG-LREED 131
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
+ P+LVHR+D+++SGLLL+ RT + L F + + + K YWA
Sbjct: 132 DPRPRLVHRIDKDTSGLLLLARTPGVAAKLAASF----RGRDVKKI-----------YWA 176
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
+V+G P G I PL+++ G I +A + +Q A + Y VL SW
Sbjct: 177 VVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKDADAQFARSVYEVLDSAARKFSW 233
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+EL PLT R HQLRVHC E+LGTPI+GD KYG
Sbjct: 234 LELSPLTGRTHQLRVHC-ESLGTPILGDPKYG 264
>gi|341614661|ref|ZP_08701530.1| pseudouridylate synthase [Citromicrobium sp. JLT1363]
Length = 398
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 105/204 (51%), Gaps = 23/204 (11%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
ADE +V + LNKPP + +G ++ +D L A + D P+LVH
Sbjct: 99 TADERAQAHAMVIKETKTAIALNKPPGLATQGGSKTYSHVDGLLDAFVEGDEPR-PRLVH 157
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLD+++SG+LL+ RT S + + FS + K YWALV+G P++
Sbjct: 158 RLDKDTSGVLLIARTPGSAAAFSKRFSGRSAKKV---------------YWALVVGVPEQ 202
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
G I APL+K G+ + +E Q A T YRV+ N +W+EL PLT
Sbjct: 203 HVGEIDAPLAKQPGTGGEKMHV------DMEGGQPAKTRYRVVERAGNKAAWLELEPLTG 256
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQLRVH A A+G PI+GD KYG
Sbjct: 257 RTHQLRVHLA-AIGHPILGDGKYG 279
>gi|409437486|ref|ZP_11264600.1| Pseudouridine synthase [Rhizobium mesoamericanum STM3625]
gi|408750914|emb|CCM75758.1| Pseudouridine synthase [Rhizobium mesoamericanum STM3625]
Length = 330
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 163/376 (43%), Gaps = 78/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F + +Q G V+++ ++K++ ++PG + +
Sbjct: 21 WFKVHFPGLGFGPLQKLLRSGQVRIDGG----------------RVKSDTRVQPGQMVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ + I S L + D + L R+V + D ++VLNKP + ++G V
Sbjct: 65 PPLDVD---KVKTGPIASRDLKHSGD-FELLSRMVLHEDDKVIVLNKPAGLAVQGGSGVT 120
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + A S E P+LVHRLDR++SG+L++ RT+ + LT F + + K+
Sbjct: 121 RHIDKMLEAWTSA-KGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKT--- 176
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YW+LV G P++ + I L K DG RI G + + A+
Sbjct: 177 ------------YWSLVKGVPRKHEDKISTWLVKEATPDGDRMRI---AKHGEDGADHAV 221
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRV+ +W+E+ P T R HQLRVH +G PI+GD KY
Sbjct: 222 SYYRVIETAAQRLAWLEMEPYTGRTHQLRVHALH-IGHPIIGDPKY-------------F 267
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D +P P G V + LHLH R + D P+ LR
Sbjct: 268 DDDPNWDFP-------------GGVQKR---LHLHARHI--DIPHPSGGR-------LRI 302
Query: 471 VASMPSHMKISWNLMS 486
A +P HM +WNL+
Sbjct: 303 TAPLPPHMLQTWNLLG 318
>gi|399067133|ref|ZP_10748776.1| pseudouridine synthase, RluA family [Novosphingobium sp. AP12]
gi|398027292|gb|EJL20848.1| pseudouridine synthase, RluA family [Novosphingobium sp. AP12]
Length = 453
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 107/201 (53%), Gaps = 24/201 (11%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
EI+ +V +D + +VLNKPP + +G +D L A + + P+LVHRLD
Sbjct: 103 EIELADSMVLTQDRSAIVLNKPPGLATQGGSGQKEHVDGLLDAYV--EKGPRPRLVHRLD 160
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SG+LL+ RT S + + FS K YWALV+G P +G
Sbjct: 161 KDTSGVLLIARTPGSAAFFSKRFSGRTARKI---------------YWALVVGVPDIHEG 205
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+I PL+K G E++ + + G Q A T YRV+ N +W+EL PLT R H
Sbjct: 206 LIELPLAKQPGTGG--EKMHVDEKEG----QTARTRYRVIDRAGNRAAWVELHPLTGRTH 259
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVH A A+G PIVGD KYG
Sbjct: 260 QLRVHMA-AIGHPIVGDGKYG 279
>gi|17987266|ref|NP_539900.1| ribosomal large subunit pseudouridine synthase C [Brucella
melitensis bv. 1 str. 16M]
gi|225627477|ref|ZP_03785514.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
gi|17982942|gb|AAL52164.1| ribosomal large subunit pseudouridine synthase c [Brucella
melitensis bv. 1 str. 16M]
gi|225617482|gb|EEH14527.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
Length = 343
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 101 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 159
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 160 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 204
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 205 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 261
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 262 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 299
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 300 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 335
>gi|261325093|ref|ZP_05964290.1| pseudouridine synthase [Brucella neotomae 5K33]
gi|261301073|gb|EEY04570.1| pseudouridine synthase [Brucella neotomae 5K33]
Length = 326
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 84 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 142
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 143 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 187
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 188 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSNHAVSYYRIIEKAGNNLAWLEMEPYTG 244
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ + G
Sbjct: 245 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWEFL-------------------------G 277
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ + LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 278 GIQKR---LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 318
>gi|389878460|ref|YP_006372025.1| ribosomal large subunit pseudouridine synthase C [Tistrella mobilis
KA081020-065]
gi|388529244|gb|AFK54441.1| ribosomal large subunit pseudouridine synthase C [Tistrella mobilis
KA081020-065]
Length = 326
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 158/342 (46%), Gaps = 80/342 (23%)
Query: 154 RKIKTNEVMEPGARIFLP---VSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDS 210
++ K ++ + GA + LP + M+E + R G A+E D+LR V +
Sbjct: 49 KRAKADQRLTAGAVVRLPPPALPMLEAKAEGRV-----GARQTTAEEADFLRGRVLLETA 103
Query: 211 AILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKE 270
+++++KP + ++G +D + A + +E P+LVHRLDR++SG+L + R
Sbjct: 104 DLILIDKPSGLAVQGGSGTDRHLDGMLDALKRHPDDERPRLVHRLDRDTSGVLALARNAR 163
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
+ + T F + +K YWA+ +G P+ +G+I PL+K ++ G
Sbjct: 164 AAAWATRAFRERTTTKI---------------YWAVTLGVPRPARGVIDLPLAKRQVERG 208
Query: 331 KTERIILAQNSGLEASQEAMTEYRVL---GPMINGCSWIELRPLTCRKHQLRVHCAEALG 387
+ + + G Q A+TEY VL GP C+ + L+PLT R HQ+R H A A+G
Sbjct: 209 GERMVAVDEGDG----QTAVTEYEVLAAGGP----CALVALKPLTGRTHQIRAHLA-AIG 259
Query: 388 TPIVGDYKYGW-FVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHC 446
TPIVGD KYG V R + +PR LHLH
Sbjct: 260 TPIVGDLKYGGQAVDLRGQGLPR-------------------------------RLHLHA 288
Query: 447 RELKSDNLFPTLSSKPDGPDLLRFV--ASMPSHMKISWNLMS 486
R L TL DGPD R A++P HM S++ +
Sbjct: 289 RRL-------TL----DGPDGRRISVRAAIPPHMAQSFDRLG 319
>gi|328543393|ref|YP_004303502.1| pseudouridine synthase [Polymorphum gilvum SL003B-26A1]
gi|326413138|gb|ADZ70201.1| Pseudouridine synthase [Polymorphum gilvum SL003B-26A1]
Length = 334
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 142/292 (48%), Gaps = 60/292 (20%)
Query: 195 ADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHR 254
AD+ + ++ Y D ++VLNKP + ++G + +D + A + E P+LVHR
Sbjct: 88 ADDRKAVEDMILYEDDQVMVLNKPAGLAVQGGSGLSRHLDGMLDA-FTNKKGEKPRLVHR 146
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LDRE+SG+LL+ +T+++ LT F + +S K YWAL+ G PK +
Sbjct: 147 LDRETSGVLLVAKTRKAAQELTRAF----RQRSTRKI-----------YWALLAGVPKPR 191
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
QG I S L D +E++ +A++ G + +Q A++ Y V+ +W+ LRP+T R
Sbjct: 192 QGRI----STYLARDEGSEKMKVARH-GDDEAQHAVSLYSVVEQSAQKLAWVSLRPVTGR 246
Query: 375 KHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGS 434
HQLR H A +G PIVGD KY F W ++P G
Sbjct: 247 THQLRAHAAH-IGHPIVGDDKY--FNIENW-ELP------------------------GG 278
Query: 435 VLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ ++ LHL R + + P P G + A +P HM+ SWNL+
Sbjct: 279 IQNR---LHLLARRI----VIP----HPSGHGTIDVSAPLPPHMQQSWNLLG 319
>gi|260754735|ref|ZP_05867083.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260757958|ref|ZP_05870306.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260761781|ref|ZP_05874124.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260883756|ref|ZP_05895370.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|297248324|ref|ZP_06932042.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 5 str. B3196]
gi|376273272|ref|YP_005151850.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
A13334]
gi|260668276|gb|EEX55216.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260672213|gb|EEX59034.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260674843|gb|EEX61664.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260873284|gb|EEX80353.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|297175493|gb|EFH34840.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 5 str. B3196]
gi|363400878|gb|AEW17848.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
A13334]
Length = 331
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 89 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 147
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 148 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 192
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 193 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 249
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 250 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 287
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 288 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPLHMVQSWNLLG 323
>gi|339504824|ref|YP_004692244.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
litoralis Och 149]
gi|338758817|gb|AEI95281.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
litoralis Och 149]
Length = 346
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 157/351 (44%), Gaps = 60/351 (17%)
Query: 144 FVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEG---RISKRYDTI---PSGTLNPNADE 197
+ QG+++ + + E+ G R+ + G RI DT P +A +
Sbjct: 28 LISQGRVEKM--CRKGEIRVDGGRVKAATRLEVGQQVRIPPLPDTAAPAPVARSAVSAAD 85
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ V YRD I+ +NKP +P +G +D L+ A L + + + P+LVHRLD+
Sbjct: 86 AKLIQSCVIYRDDHIIAINKPAGLPTQGGSGQTRHVDGLSEA-LKFGFEDKPRLVHRLDK 144
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG+LL+ RT+ + LT K YWALV G P G
Sbjct: 145 DTSGVLLLARTRMAAKALTTAMRHKETRKI---------------YWALVAGVPTPYLGE 189
Query: 318 IHAPLSKVLLDD--GKTERIILAQNSGLE---ASQEAMTEYRVLGPMINGCSWIELRPLT 372
I L K G+ E++I ++ ++ A T Y L + + SW+ + P+T
Sbjct: 190 IRYALVKAPGHGRRGEGEKMIALPPREVDETPGAKRAHTLYATLYRVGSRASWVAMEPIT 249
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
R HQLRVH AE +G PIVGD KYG SG+ DG Q
Sbjct: 250 GRTHQLRVHMAE-IGHPIVGDGKYG-----------------GSGQE---NMGDGWGAQL 288
Query: 433 GSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWN 483
G V+SK LHLH R ++ ++ P+ + A MP HMK SW+
Sbjct: 289 GGVISKK--LHLHARMMRFEH--------PETRKPVTITADMPDHMKQSWD 329
>gi|430003654|emb|CCF19443.1| Pseudouridine synthase [Rhizobium sp.]
Length = 329
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 154/332 (46%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K++ ++PG + +P V+ +K+ I L ++D + L+R+V + D ++V
Sbjct: 49 RVKSDARVQPGQTVRVPPLDVD---TKKAGPIAGKDLKHSSD-YELLQRMVLHEDDKVIV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
LNKP + ++G V +D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 105 LNKPAGLAVQGGSGVTRHIDQMLDAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQK 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ + I L K DG R
Sbjct: 164 LTAAFRERDTKKT---------------YWALVKGVPRKHEDKISTWLVKEQTPDGDRMR 208
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G + A++ YRVL +W+E+ P T R HQLRVH +G PI+GD
Sbjct: 209 I---AKHGEAGADHAVSFYRVLETAAQTMAWLEMEPYTGRTHQLRVHALH-IGHPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + P+ P G +QK LHLH R + D
Sbjct: 265 KY---------------FDDDINWPF----PGG--IQK--------RLHLHARHI--DIP 293
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P+ L+ A +P HM SWNL+
Sbjct: 294 HPSGGR-------LKVTAPLPPHMVQSWNLLG 318
>gi|237815424|ref|ZP_04594422.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
gi|237790261|gb|EEP64471.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
Length = 343
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 101 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 159
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 160 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 204
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 205 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 261
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 262 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 299
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 300 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPLHMVQSWNLLG 335
>gi|85707668|ref|ZP_01038734.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
gi|85689202|gb|EAQ29205.1| pseudouridylate synthase [Erythrobacter sp. NAP1]
Length = 395
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 129/264 (48%), Gaps = 40/264 (15%)
Query: 138 ANMGDSFVEQGQMKPIRKIKTNEVME--PGARIFLPVSMVEGRISKRYDTIPSGTLNPNA 195
A G V+ G++KP +++ +V+ PG G KR P
Sbjct: 42 ARTGQVRVDGGRVKPEDRLEAGQVLRVPPG-----------GEDQKRG---PKPRRPLTE 87
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK--LVH 253
+EI R +V + +VLNKPP + +G +D L A + + P+ LVH
Sbjct: 88 EEIAEARAMVIRETPSAIVLNKPPGLATQGGSKTTKHVDGLLDAFVDDQEEDAPRPRLVH 147
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLD+++SG+LL+ RT S + + FS + K YWALV+G P+
Sbjct: 148 RLDKDTSGVLLIARTPGSAATYSRKFSGRSARKV---------------YWALVVGVPEV 192
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++G I APL+K G E++ + + G Q A T YRV+ +W+EL PLT
Sbjct: 193 REGTIDAPLAKQPGTGG--EKMHVDEEGG----QIAKTRYRVVERAGTRAAWVELEPLTG 246
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQLRVH A A+G PIVGD KYG
Sbjct: 247 RTHQLRVHLA-AIGHPIVGDGKYG 269
>gi|306840487|ref|ZP_07473246.1| pseudouridine synthase, RluA family [Brucella sp. BO2]
gi|306289502|gb|EFM60720.1| pseudouridine synthase, RluA family [Brucella sp. BO2]
Length = 284
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D + V NKP + ++G V +D + A S E P+LVH
Sbjct: 42 NQQDGDVLSQMLLYEDPKVFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 100
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 101 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 145
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 146 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 202
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 203 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 240
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 241 --------LHLHARHIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 276
>gi|62289923|ref|YP_221716.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 1 str. 9-941]
gi|82699851|ref|YP_414425.1| RNA-binding protein S4 [Brucella melitensis biovar Abortus 2308]
gi|189024165|ref|YP_001934933.1| Pseudouridine synthase [Brucella abortus S19]
gi|260545328|ref|ZP_05821069.1| pseudouridine synthase [Brucella abortus NCTC 8038]
gi|423166894|ref|ZP_17153597.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|423170732|ref|ZP_17157407.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|423173186|ref|ZP_17159857.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|423177527|ref|ZP_17164173.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|423180162|ref|ZP_17166803.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|423183294|ref|ZP_17169931.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|423185766|ref|ZP_17172380.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
gi|423188902|ref|ZP_17175512.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
gi|62196055|gb|AAX74355.1| ribosomal large subunit pseudouridine synthase C [Brucella abortus
bv. 1 str. 9-941]
gi|82615952|emb|CAJ10975.1| RNA-binding S4:Pseudouridine synthase:Pseudouridine synthase,
Rlu:Pseudouridine synthase, RluD [Brucella melitensis
biovar Abortus 2308]
gi|189019737|gb|ACD72459.1| Pseudouridine synthase [Brucella abortus S19]
gi|260096735|gb|EEW80610.1| pseudouridine synthase [Brucella abortus NCTC 8038]
gi|374539310|gb|EHR10814.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|374543125|gb|EHR14609.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|374543741|gb|EHR15223.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|374548726|gb|EHR20173.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|374549357|gb|EHR20800.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|374550009|gb|EHR21450.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|374558560|gb|EHR29953.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
gi|374559857|gb|EHR31242.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
Length = 326
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 135/293 (46%), Gaps = 58/293 (19%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N + D L +++ Y D I V NKP + ++G V +D + A S E P+LVH
Sbjct: 84 NQQDGDVLSQMLLYEDPKIFVFNKPAGLAVQGGSGVTRHIDGMLEAWRSKK-GEKPRLVH 142
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
R+DR++SG+L++ RT+ + LT F + + K+ YWALV G P++
Sbjct: 143 RIDRDTSGVLVVARTRGAAQALTASFRERDTKKT---------------YWALVKGVPRK 187
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++ I L K DG R+ G S A++ YR++ N +W+E+ P T
Sbjct: 188 REDKISTWLVKEQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLAWLEMEPYTG 244
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 245 RTHQLRVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR-- 282
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 283 --------LHLHARRIRIPN--------PSG-GIIDVTAPLPLHMVQSWNLLG 318
>gi|254466117|ref|ZP_05079528.1| pseudouridine synthase, RluD [Rhodobacterales bacterium Y4I]
gi|206687025|gb|EDZ47507.1| pseudouridine synthase, RluD [Rhodobacterales bacterium Y4I]
Length = 348
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 171/382 (44%), Gaps = 81/382 (21%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM-GDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
W++ F V I+ KG ++++ A + S VE GQ+ + + ++ ++P
Sbjct: 21 WLRRLFPHVNQGRIEKMCRKGELRLDGARVKASSRVEAGQVVRVPPLADSD-LKPAEPRA 79
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
+ +S + ++ ++ V YRD ++VLNKP + ++G
Sbjct: 80 MKISDADAKM---------------------IQSCVIYRDDDVIVLNKPAGLAVQGGSGT 118
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
+D LA A L + E PKLVHR+D+++SG+L++ R +++ LT F N K
Sbjct: 119 TKHVDGLAEA-LKFGLEEKPKLVHRIDKDTSGVLVLARNRKAAQGLTAAFRHKNTRKI-- 175
Query: 290 KAWNDACEAMYQRYWALVIGSP-----KEKQGIIHAPLSKVLLDDGKTERIILAQNSGLE 344
YWALV G P + K G++ AP G+ E++I ++
Sbjct: 176 -------------YWALVAGVPTPYLGEIKNGLVKAPGHG---KSGEGEKMINVHPRDID 219
Query: 345 ---ASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVH 401
++ A T Y L + + +W+ + P+T R HQLR H + +G PI GD KYG
Sbjct: 220 DTPGAKRAHTLYATLYRVASRAAWVAMEPITGRTHQLRAHMS-GMGHPIAGDGKYG---- 274
Query: 402 RRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK 461
SG+ DG Q G V+SK LHLH R + ++ ++ K
Sbjct: 275 -------------GSGQE---NMGDGWGAQIGGVISK--KLHLHARRMVFEH---PVTRK 313
Query: 462 PDGPDLLRFVASMPSHMKISWN 483
P + VA +P HMK SW
Sbjct: 314 P-----VSVVAPLPEHMKESWE 330
>gi|347739549|ref|ZP_08870795.1| ribosomal large subunit pseudouridine synthase C [Azospirillum
amazonense Y2]
gi|346917122|gb|EGX99601.1| ribosomal large subunit pseudouridine synthase C [Azospirillum
amazonense Y2]
Length = 337
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 135/287 (47%), Gaps = 60/287 (20%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
E+ LR V YRDS ++VLNKP + ++G + +DA+ L++D E PKLVHRLD
Sbjct: 95 EVKALRDAVLYRDSDVIVLNKPAGLAVQGGTGQNKHLDAMLDV-LTFDGKERPKLVHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SG L++ RT + + L F K YWA+ +G PK+ QG
Sbjct: 154 KDTSGCLVLARTSFAATRLGGYFRGKEARKY---------------YWAVTVGVPKQYQG 198
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I A L+K G ER+ + ++ G A+T Y+V+ +++ L PLT R H
Sbjct: 199 KIDAALAKEAGTRG--ERMAVDEDEG----ARAVTLYQVIENAHRQAAFVALWPLTGRTH 252
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVL 436
QLR H A+GTPI+GD KY +G+ L P G ++ +
Sbjct: 253 QLRAHMV-AIGTPILGDGKY-------------------AGQEAFL--PGGAELPR---- 286
Query: 437 SKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWN 483
LHLH R + N P G + A++P HM +W
Sbjct: 287 ----QLHLHARRIVIPN--------PRGGKPIDVTANLPPHMAKTWE 321
>gi|84515664|ref|ZP_01003025.1| ribosomal large subunit pseudouridine synthase C [Loktanella
vestfoldensis SKA53]
gi|84510106|gb|EAQ06562.1| ribosomal large subunit pseudouridine synthase C [Loktanella
vestfoldensis SKA53]
Length = 351
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 158/365 (43%), Gaps = 62/365 (16%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H +G ++ C G+ V+ G ++KT+ +E G ++ +P E +
Sbjct: 28 HLTQGRIEKLC-RKGELRVDGG------RVKTSTRLEVGQKVRIPPLPTEQEAAAAATLA 80
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
G +A I + V YRD I+ +NKP + +G +D +A A L + Y+
Sbjct: 81 RHGVTKADAKLI---QSCVIYRDDHIIAINKPHGLATQGGTNTTRHVDGMAEA-LMFGYD 136
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
E P+LVHRLDR++SG+LL+ RT+ LT K YWA
Sbjct: 137 EKPRLVHRLDRDTSGVLLLARTRMMAKQLTENLKHRETRKI---------------YWAA 181
Query: 307 VIGSPKEKQGIIHAPLSKV--LLDDGKTERIILA---QNSGLEASQEAMTEYRVLGPMIN 361
V G P + G I L K G+ E++ + + E ++ A ++Y V+ + +
Sbjct: 182 VAGVPHPRAGTIKYGLVKAPGHGKGGENEKMRCVHPNEIASTEGAKRATSDYAVMDTLAS 241
Query: 362 GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYK 421
+W L P+T R HQLR H AE +G PI+GD KYG SG+
Sbjct: 242 RAAWCALVPITGRTHQLRAHMAE-IGHPIIGDGKYGG-----------------SGQE-- 281
Query: 422 LRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
DG GS + + +HLH R L ++ P L A +P HM+ +
Sbjct: 282 -NLGDGWGASMGSEIGRK--MHLHARSLTIEH--------PATGKTLHLTADLPEHMQNT 330
Query: 482 WNLMS 486
W+ +
Sbjct: 331 WDFVG 335
>gi|420245078|ref|ZP_14748755.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
gi|398049440|gb|EJL41860.1| pseudouridine synthase, RluA family [Rhizobium sp. CF080]
Length = 331
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 153/332 (46%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K++ ++PG + +P V+ +K+ I L ++D + L R+V + D ++V
Sbjct: 49 RVKSDARVQPGQTVRIPPMEVD---AKKTGPIAGKDLKHSSD-FELLSRMVLHEDEKVIV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
LNKP + ++G V +D + + +S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 105 LNKPAGLAVQGGSGVARHIDQMLDSWVS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQK 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ + I L K DG R
Sbjct: 164 LTAAFRERDTKKT---------------YWALVKGVPRKHEDKISTWLVKEQTPDGDRMR 208
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G + + A++ YRVL W+E+ P T R HQLRVH +G PI+GD
Sbjct: 209 I---AKHGEDGADHAVSYYRVLEMAAQTLCWMEMEPYTGRTHQLRVHALH-IGHPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY D + P G + K LHLH R + +
Sbjct: 265 KY-------------FDDDHNWDFP-------------GGIQKK---LHLHARHIDIPH- 294
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P+G L+ A +P HM SWNL+
Sbjct: 295 -------PNG-GRLKVTAPLPPHMVQSWNLLG 318
>gi|258542797|ref|YP_003188230.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01]
gi|384042718|ref|YP_005481462.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-12]
gi|384051235|ref|YP_005478298.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-03]
gi|384054343|ref|YP_005487437.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-07]
gi|384057577|ref|YP_005490244.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-22]
gi|384060218|ref|YP_005499346.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-26]
gi|384063510|ref|YP_005484152.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-32]
gi|384119520|ref|YP_005502144.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256633875|dbj|BAH99850.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01]
gi|256636934|dbj|BAI02903.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-03]
gi|256639987|dbj|BAI05949.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-07]
gi|256643043|dbj|BAI08998.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-22]
gi|256646098|dbj|BAI12046.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-26]
gi|256649151|dbj|BAI15092.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-32]
gi|256652138|dbj|BAI18072.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655195|dbj|BAI21122.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase C
[Acetobacter pasteurianus IFO 3283-12]
Length = 328
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 134/272 (49%), Gaps = 35/272 (12%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLP-VSMVEGRISKRYDT 185
H +G +Q C G VE ++++ + +EPG + +P + M +K
Sbjct: 27 HLTQGALQKLC-RTGQIRVEG------KRVEASTRLEPGQTVRVPPIPMA----AKPARD 75
Query: 186 IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
+P A EI R++V Y+D ++ LNKP + ++G + +D + L +
Sbjct: 76 VPRPLDEKLAREI---RKMVVYQDKHVIALNKPAGLAVQGGPGITKHVDMMLDG-LREED 131
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
+ P+LVHR+D+++SGLLL+ RT + L F + K YWA
Sbjct: 132 DPRPRLVHRIDKDTSGLLLLARTPGVAAKLAASFRGRDVKKI---------------YWA 176
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
+V+G P G I PL+++ G I +A + +Q A + Y VL SW
Sbjct: 177 VVVGRPDPLSGEIDQPLARLGAGPGS---ITVAADRKDADAQSARSVYEVLDSAARKFSW 233
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+EL PLT R HQLRVHC E+LGTPI+GD KYG
Sbjct: 234 LELSPLTGRTHQLRVHC-ESLGTPILGDPKYG 264
>gi|148555622|ref|YP_001263204.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas
wittichii RW1]
gi|148500812|gb|ABQ69066.1| ribosomal large subunit pseudouridine synthase C [Sphingomonas
wittichii RW1]
Length = 368
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 131/286 (45%), Gaps = 63/286 (22%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
+EI + R LV ++D +V+NKPP + +G +D L A L +D PKLVHRL
Sbjct: 94 EEIAFARSLVIHQDRQAIVINKPPGLATQGGTKTDIHVDRLLDA-LQFDAESRPKLVHRL 152
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG+LL+ RT + + FS S++ K YWA+ G P
Sbjct: 153 DKDTSGVLLLARTSRAAAHFAKAFS----SRTARKV-----------YWAIATGVPSIDD 197
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I P++K G E++ + + G A T YRV+ N W+EL+P T R
Sbjct: 198 GMIELPIAKQPGTGG--EKMHVDEKEG----SPARTRYRVIERAGNRACWVELQPHTGRT 251
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A A+G PIVGD KYG G +
Sbjct: 252 HQLRVHLA-AIGHPIVGDGKYG-----------------------------GAEAFLSGT 281
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
+S+ +HLH R L+ D+ PDG L +A P H+ S
Sbjct: 282 ISR--KMHLHARRLRVDH--------PDG-GTLDVIAEPPEHITDS 316
>gi|146341534|ref|YP_001206582.1| ribosomal large subunit pseudouridine synthase RluC-like protein
[Bradyrhizobium sp. ORS 278]
gi|146194340|emb|CAL78364.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) [Bradyrhizobium sp. ORS 278]
Length = 458
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+D L+ + Y D +LVLNKP + ++G + +D + + + P+LVHR+DR
Sbjct: 214 LDSLKAMTLYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEV-MRDAKGQKPRLVHRIDR 272
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + + LT F + +S K YWALV G PK KQG
Sbjct: 273 ETSGCLLIAKTRFAATHLTGAF----RHRSARKV-----------YWALVAGVPKPKQGR 317
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K D+G+ + I+ G E + A+T Y V+ N +W+ L+P+T R HQ
Sbjct: 318 ISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQ 374
Query: 378 LRVHCAEALGTPIVGDYKY 396
LR H A +G PIVGD KY
Sbjct: 375 LRAHMAH-IGHPIVGDPKY 392
>gi|365882308|ref|ZP_09421558.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. ORS 375]
gi|365289393|emb|CCD94089.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. ORS 375]
Length = 332
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ L+ + Y D +LVLNKP + ++G + +D + + + P+LVHR+DR
Sbjct: 88 LESLKAMTLYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEV-MRDSKGQKPRLVHRIDR 146
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + + LT F +S+S K YWALV G PK KQG
Sbjct: 147 ETSGCLLIAKTRFAATHLTGAF----RSRSARKI-----------YWALVAGVPKPKQGR 191
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K D+G+ + I+ G E + A+T Y V+ N +W+ L+P+T R HQ
Sbjct: 192 ISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQ 248
Query: 378 LRVHCAEALGTPIVGDYKY 396
LR H A +G PIVGD KY
Sbjct: 249 LRAHMAH-IGHPIVGDPKY 266
>gi|395786460|ref|ZP_10466187.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|423716647|ref|ZP_17690837.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
gi|395422758|gb|EJF88954.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|395428721|gb|EJF94796.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
Length = 327
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 142/308 (46%), Gaps = 58/308 (18%)
Query: 179 ISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAA 238
I ++ + +G ++ D L++++ Y D+ I V NKP + ++G V +D +
Sbjct: 69 IDEKGKAVLTGKTIRGQNDGDVLKQMLLYEDAKIYVFNKPAGLAVQGGSGVVRHVDGMLE 128
Query: 239 AALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEA 298
A E P+LVHRLDR++SG+L++ R++ + LT F + K+
Sbjct: 129 A-WRNKKGEKPRLVHRLDRDTSGVLVVARSRGAAQSLTAAFRARDTKKT----------- 176
Query: 299 MYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGP 358
YWALV G PK+KQ I L K DG R+ G S A++ YRV+
Sbjct: 177 ----YWALVRGVPKKKQDKISTWLVKEATADGDKMRVC---EHGEPDSDHAVSHYRVIDT 229
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGK 418
SW+E+ P T R HQLRVH A + PI+GD KY +F W ++P
Sbjct: 230 RSRVLSWLEMEPYTGRTHQLRVHAA-FINHPIIGDPKY-FFSDSNW-ELP---------- 276
Query: 419 PYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
G + ++ LHLH R ++ N P G LL A +P HM
Sbjct: 277 --------------GGIQNR---LHLHARRIRISN--------PSG-GLLDVTAPLPPHM 310
Query: 479 KISWNLMS 486
S+NL++
Sbjct: 311 VQSFNLLA 318
>gi|390450950|ref|ZP_10236534.1| RluA family pseudouridine synthase [Nitratireductor aquibiodomus
RA22]
gi|389661712|gb|EIM73311.1| RluA family pseudouridine synthase [Nitratireductor aquibiodomus
RA22]
Length = 328
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 151/332 (45%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
+ K + +EPG + +P V+ ++ D + N + + L +++ Y D + V
Sbjct: 49 RAKADTRLEPGQMVRVPPLDVD----RKGDGQATAHSLRNTGDGEALMQMLLYEDPKVFV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V+ +D + A L E P+LVHRLDR++SG+L++ RT+++
Sbjct: 105 FNKPAGLAVQGGSGVNRHVDGMLEA-LRNKKGEKPRLVHRLDRDTSGVLVVARTRQAAMR 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
L F + K+ YWALV G P + I L+K DG R
Sbjct: 164 LAEAFRARDTKKT---------------YWALVKGVPNRDEARISTWLAKEQTPDGDRMR 208
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
++ G S A++ YRV+ + SW+E+ P T R HQLRVH A +G PI+GD
Sbjct: 209 VV---KHGEPDSDHAVSNYRVVERAGSALSWLEMEPYTGRTHQLRVHAA-YIGCPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + + W+ P G +QK LHLH R + +
Sbjct: 265 KY-FEADQNWE------------------FPGG--IQK--------RLHLHARRI----V 291
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P G + A +P HM+ SWNL+
Sbjct: 292 IP----HPGGGK-IDVTAPLPPHMRQSWNLLG 318
>gi|58040098|ref|YP_192062.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans 621H]
gi|58002512|gb|AAW61406.1| Ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans 621H]
Length = 335
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 132/286 (46%), Gaps = 61/286 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+R++V Y D +LVL+KP + +G + +D + L + + P+LVHR+DR++S
Sbjct: 86 IRKMVIYEDEHLLVLDKPSGLATQGGPGITKHVDMMLDG-LRTEGGDRPRLVHRIDRDTS 144
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+LL+ RT + L F + K+ YWA+V+G P + GII
Sbjct: 145 GILLIARTPGVAAKLAAAFRGRDVEKT---------------YWAVVVGRPSPESGIIDQ 189
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL+K+ +++A + E + A TEY L SW++L PLT R HQLRV
Sbjct: 190 PLAKI---GAGGAALVIAASRDEEDAASAKTEYETLDAAGKKLSWLKLSPLTGRTHQLRV 246
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
H E++GTPI+GD +YG K P+G +
Sbjct: 247 HT-ESIGTPILGDPRYGG----------------------KAAHPEGF----------ID 273
Query: 441 LLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R+L + P G L+ A +P HM+ ++ +
Sbjct: 274 RLHLHARQLDIPH--------PAGGRLI-VTAPLPPHMRETFRTLG 310
>gi|374576195|ref|ZP_09649291.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
gi|374424516|gb|EHR04049.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM471]
Length = 404
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 125/434 (28%), Positives = 191/434 (44%), Gaps = 91/434 (20%)
Query: 56 PPRPAVIRVSEKKVAHLGPPKAGP-KPRQLLSLPPFPGHNLPGKHWGRQCHVTAVSWVKY 114
PPR A RV E++ P KA P KP + L P K G + ++ +++
Sbjct: 44 PPRFASERV-ERRAPKAEPEKAAPAKPVEAL----LPTKVQTVKVTGDENNMRVDRFLEA 98
Query: 115 YFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSM 174
+F + S IQ KG ++++ +++ + + +E G + +P
Sbjct: 99 HFPGLSFSHIQRVVRKGELRVDG----------------KRVDSKDRLEEGQSVRIP--- 139
Query: 175 VEGRISKRYDT--IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNS 232
+ DT P+ + L+ + Y D +LVLNKP + ++G +
Sbjct: 140 -----PLKLDTPKAPNPQSEAAQKTLAALKEMTIYEDDDVLVLNKPAGLAVQGGSGMTRH 194
Query: 233 MDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAW 292
+D + + + P+LVHR+DRE+SG LL+ +T+ + S LT F +S+S K
Sbjct: 195 IDQMLEV-MRDSKGQKPRLVHRIDRETSGCLLVAKTRFAASHLTGAF----RSRSARKT- 248
Query: 293 NDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTE 352
YWALV G PK KQG I L+K +D RI AQ+ G E + A+T
Sbjct: 249 ----------YWALVPGLPKPKQGRISTFLAKEESEDDTIMRI--AQH-GDEGASHAVTY 295
Query: 353 YRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDI 412
Y V+ N +W+ L+P+T R HQLR H E +G PIVGD KY F W+
Sbjct: 296 YAVVETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDPKY--FNIENWQL------ 346
Query: 413 EPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVA 472
P GL + LHL R + + P P G ++ A
Sbjct: 347 ------------PGGLQNR----------LHLLARRI----VIP----HPRG-GVIDATA 375
Query: 473 SMPSHMKISWNLMS 486
+P HM+ SWNL+
Sbjct: 376 PLPQHMQQSWNLLG 389
>gi|367471682|ref|ZP_09471287.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) [Bradyrhizobium sp. ORS 285]
gi|365276001|emb|CCD83755.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) [Bradyrhizobium sp. ORS 285]
Length = 468
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 107/199 (53%), Gaps = 20/199 (10%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+D L + Y D +LVLNKP + ++G + +D + + + P+LVHR+DR
Sbjct: 224 LDSLEAMTLYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEV-MRDAKGQKPRLVHRIDR 282
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + + LT F + +S K YWALV G PK KQG
Sbjct: 283 ETSGCLLIAKTRFAATHLTGAF----RHRSARKV-----------YWALVAGVPKPKQGR 327
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K D+G+ + I+ G E + A+T Y V+ N +W+ L+P+T R HQ
Sbjct: 328 ISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQ 384
Query: 378 LRVHCAEALGTPIVGDYKY 396
LR H A +G PIVGD KY
Sbjct: 385 LRAHMAH-IGHPIVGDPKY 402
>gi|407778993|ref|ZP_11126253.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
pacificus pht-3B]
gi|407299277|gb|EKF18409.1| ribosomal large subunit pseudouridine synthase C [Nitratireductor
pacificus pht-3B]
Length = 328
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 162/379 (42%), Gaps = 84/379 (22%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM-GDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
W K +F + +Q G V+++ D+ V+ GQM +
Sbjct: 21 WFKVHFPGLGFGHLQKLLRSGQVRVDGGRAKADTRVKAGQM-----------------VR 63
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
+P V+ K D + + +L D + L +++ Y D + V NKP + ++G V
Sbjct: 64 IPPLAVD---RKGSDGMTARSLRDTGD-AEALSQMLLYEDPKVFVFNKPAGLAVQGGSGV 119
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
H +D + A E P+LVHR+DR++SG+L++ RT+++ L F K+
Sbjct: 120 HRHVDDMLEA-WRNKKGEKPRLVHRIDRDTSGVLVVARTRQAAMRLAEAFRARETKKT-- 176
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
YWALV G PK+++G I L K DG R+ G S A
Sbjct: 177 -------------YWALVKGVPKQREGRISTWLVKEQTPDGDRMRVT---KHGEPDSDHA 220
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR 409
++ YR++ SW+E+ P T R HQLRVH A +G PI+GD KY + + W+
Sbjct: 221 VSNYRLIEQAGMTLSWLEMEPYTGRTHQLRVHAAH-IGCPIIGDPKY-FEADQNWE---- 274
Query: 410 VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLR 469
P GL + LHLH R + + P PD R
Sbjct: 275 --------------FPGGLQNR----------LHLHARRI----VIPH-------PDQGR 299
Query: 470 F--VASMPSHMKISWNLMS 486
A +P HM+ SWNL+
Sbjct: 300 IDVTAPLPPHMRQSWNLLG 318
>gi|85373096|ref|YP_457158.1| pseudouridylate synthase [Erythrobacter litoralis HTCC2594]
gi|84786179|gb|ABC62361.1| pseudouridylate synthase [Erythrobacter litoralis HTCC2594]
Length = 399
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 106/194 (54%), Gaps = 23/194 (11%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
++K SAI VLNKPP + +G +D L A + + + P+LVHRLD+++SG+L
Sbjct: 99 VIKETKSAI-VLNKPPGLATQGGTKTTKHVDGLLDAFVDGEDDPRPRLVHRLDKDTSGVL 157
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ RT S + + F A + + YWALV+G P +G I APL+
Sbjct: 158 LIARTPGSAAAYSKRF---------------AGRSAKKVYWALVVGVPDLHEGEIDAPLA 202
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K G E++ + + +G Q A T YRV+ N W+EL P+T R HQLRVH A
Sbjct: 203 KQPGTGG--EKMHVDEENG----QPAKTRYRVVERAGNRACWVELEPMTGRTHQLRVHMA 256
Query: 384 EALGTPIVGDYKYG 397
A+G PIVGD KYG
Sbjct: 257 -AMGHPIVGDGKYG 269
>gi|398828315|ref|ZP_10586516.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
gi|398218350|gb|EJN04860.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
Length = 328
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 136/291 (46%), Gaps = 58/291 (19%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+ D L++++ Y D + V NKP + ++G V+ +D + A E P+LVHRL
Sbjct: 86 DDGDVLKQMLLYEDPKVYVFNKPAGLAVQGGSGVNRHVDDMLEA-WRNKKGEKPRLVHRL 144
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DR++SG+L++ RT+ + LT F + K+ YWALV G P++++
Sbjct: 145 DRDTSGVLVVARTRGAAQALTAAFRERETKKT---------------YWALVKGIPRKRE 189
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I L+K +DG R++ G S A++ YRV+ +W+E+ P T R
Sbjct: 190 DKIATWLAKEATEDGDRMRVV---PHGEPDSDHAISYYRVIESAGQVLTWLEMEPYTGRT 246
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A +G PI+GD KY E + + P G+ +
Sbjct: 247 HQLRVHAAH-IGCPIIGDPKY---------------FEADTNWSF----PGGIQNR---- 282
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM +WNL+
Sbjct: 283 ------LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQTWNLLG 318
>gi|260428027|ref|ZP_05782006.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
SE45]
gi|260422519|gb|EEX15770.1| ribosomal large subunit pseudouridine synthase C [Citreicella sp.
SE45]
Length = 351
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 163/381 (42%), Gaps = 70/381 (18%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W+K +F H +G ++ C G+ V+ G ++K + +E G ++ +
Sbjct: 21 WLKRHF---------PHLAQGRIEKMC-RKGEIRVDGG------RVKASTRLEVGQQVRI 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P + E +AD ++ V ++D I+ LNKPP +P++G
Sbjct: 65 P-PLPEPDAVNAAPAAAPKPRVSDAD-TKLIQDAVIWKDDHIIALNKPPGLPVQGGSKTT 122
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D L+ A L + +E P+LVHRLD+++SG+LL+ RT+ LT K
Sbjct: 123 RHVDGLSEA-LRFGLDEKPRLVHRLDKDTSGVLLLARTRAVAQALTAAIRHKQTRKI--- 178
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV--LLDDGKTERIILAQNSGL---EA 345
YWA+V G P G I L K G+ E++I + E
Sbjct: 179 ------------YWAVVAGVPTPYLGEIRYALVKAPGHGSSGEGEKMICVHPRDVDRTEG 226
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
++ A T Y L + SW+ L P+T R HQLR H AE +G PI+GD KYG
Sbjct: 227 AKRAHTLYATLYRVAGRASWVALEPITGRTHQLRAHMAE-IGHPIIGDGKYG-------- 277
Query: 406 QMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGP 465
SG+ DG Q G V+SK LHLH R + ++ P
Sbjct: 278 ---------GSGQE---NLGDGWGAQLGGVISKK--LHLHARSMTFEH--------PVTH 315
Query: 466 DLLRFVASMPSHMKISWNLMS 486
+ A +P HMK +W +
Sbjct: 316 KRVTVTAPLPEHMKHTWETLG 336
>gi|334141387|ref|YP_004534593.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. PP1Y]
gi|333939417|emb|CCA92775.1| ribosomal large subunit pseudouridine synthase C [Novosphingobium
sp. PP1Y]
Length = 420
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 103/194 (53%), Gaps = 24/194 (12%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
+V +D A +VLNKPP + +G + +D L A P+LVHRLD+++SG+L
Sbjct: 100 MVLTQDRAAIVLNKPPGLATQGGSGMKQHVDGLLDAYAPDGPR--PRLVHRLDKDTSGVL 157
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ RT S + + FS + K YWALV+G P G+I PL+
Sbjct: 158 LIARTPGSAAFFSKRFSGRSARKI---------------YWALVVGVPSISDGMIELPLA 202
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K G E++ + + E Q A T YRVL N +W+EL PLT R HQLRVH A
Sbjct: 203 KQPGTGG--EKMHVDE----EGGQPARTRYRVLDRAGNRAAWVELHPLTGRTHQLRVHMA 256
Query: 384 EALGTPIVGDYKYG 397
A+G PIVGD KYG
Sbjct: 257 -AIGHPIVGDGKYG 269
>gi|126736635|ref|ZP_01752375.1| Pseudouridine synthase, RluD [Roseobacter sp. CCS2]
gi|126713948|gb|EBA10819.1| Pseudouridine synthase, RluD [Roseobacter sp. CCS2]
Length = 351
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 158/365 (43%), Gaps = 62/365 (16%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
H +G ++ C G+ V+ G ++K+N +E G +I +P E +
Sbjct: 28 HLTQGRIEKMC-RKGEVRVDGG------RVKSNSRVEVGQKIRIPPLPTEEEAAAAASLA 80
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
G +A I + V Y+D I+ +NKP + +G +D L+ A L +DY+
Sbjct: 81 KHGVTKADAKLI---QSCVIYKDDHIIAINKPHGLATQGGTNTTRHVDGLSEA-LMFDYD 136
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
E P+LVHRLD+++SG+LL+ RT+ LT K YWA
Sbjct: 137 EKPRLVHRLDKDTSGVLLLARTRMMAKQLTENLKHRETRKI---------------YWAA 181
Query: 307 VIGSPKEKQGIIHAPLSKV--LLDDGKTERIILAQNSGL---EASQEAMTEYRVLGPMIN 361
V G P + G I L K G+ E++ L E ++ A ++Y V+ + +
Sbjct: 182 VAGVPHPRAGTIKYGLVKAPGHGRGGENEKMRCVHPRDLDSVEGAKRATSDYAVMDTLAS 241
Query: 362 GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYK 421
+W L P+T R HQLR H AE +G PIVGD KYG SG+
Sbjct: 242 RAAWCALVPITGRTHQLRAHMAE-IGHPIVGDGKYG-----------------GSGQE-- 281
Query: 422 LRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKIS 481
DG GS + + LHLH R L ++ P L A +P HM+ +
Sbjct: 282 -NLGDGWGAGMGSEIGRK--LHLHARSLTIEH--------PATGATLHLTAPLPEHMQNT 330
Query: 482 WNLMS 486
W+ +
Sbjct: 331 WDFVG 335
>gi|395765156|ref|ZP_10445772.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
gi|395413009|gb|EJF79488.1| RluA family pseudouridine synthase [Bartonella sp. DB5-6]
Length = 327
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 163/376 (43%), Gaps = 78/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K ++ V +Q G ++++ ++KT+ + G + +
Sbjct: 21 WFKVHYPRVGFGYLQKLLRSGQIRVDGG----------------RVKTDTRLLMGQAVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P V+ K I TL DE L++++ Y D + V NKP + ++G +
Sbjct: 65 PPFPVD---DKESFPITDKTLRGQDDET-VLKKMLLYEDPKVFVFNKPAGLAVQGGSGLT 120
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D++ A + E P+LVHRLDRE+SG+L++ R++ + LT F + K+
Sbjct: 121 RHVDSMLEAWRNKK-GEKPRLVHRLDRETSGVLIVARSRSAAQALTAAFRERETKKT--- 176
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G PK+KQ I + K + G R+ G S A+
Sbjct: 177 ------------YWALVRGVPKKKQDKISTWMVKDITAQGDKMRVC---EHGEPDSNHAV 221
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL SW+E+ P T R HQLRVH A + PI+GD KY +F W +
Sbjct: 222 SYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAAH-MDHPIIGDSKY-FFSDSNWALL--- 276
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
G + ++ LHLH R ++ + P G +L
Sbjct: 277 ----------------------GGIQNR---LHLHARRIRIPH--------PSG-GVLDI 302
Query: 471 VASMPSHMKISWNLMS 486
VA +P HM S+NL++
Sbjct: 303 VAPLPPHMVQSFNLLA 318
>gi|357030713|ref|ZP_09092657.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
morbifer G707]
gi|356415407|gb|EHH69050.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
morbifer G707]
Length = 329
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 131/286 (45%), Gaps = 61/286 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ ++V Y+D +LVL+KP + +G + +D + L + + P+LVHR+DR++S
Sbjct: 86 IEKMVIYQDEHLLVLDKPSGLATQGGPGITKHVDMMLDG-LRVEGGDRPRLVHRIDRDTS 144
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+LL+ RT + L F + K+ YWA+V+G P GII
Sbjct: 145 GILLIARTPGVAAKLAAAFRGRDVQKT---------------YWAVVVGRPSPASGIIDQ 189
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL+K+ +++A + E + A +EY L SW++L PLT R HQLRV
Sbjct: 190 PLAKI---GAGGASLVIAASRDEEDAASAKSEYETLDAAGKKFSWLKLSPLTGRTHQLRV 246
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
HC E++GTPI+GD +YG K PDG +
Sbjct: 247 HC-ESIGTPILGDPRYGG----------------------KAAHPDGF----------ID 273
Query: 441 LLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R+L + P G L+ A P HM+ ++ +
Sbjct: 274 RLHLHARQLDIPH--------PAGGRLI-VTAPPPPHMRETFRTLG 310
>gi|298291467|ref|YP_003693406.1| pseudouridine synthase [Starkeya novella DSM 506]
gi|296927978|gb|ADH88787.1| pseudouridine synthase, RluA family [Starkeya novella DSM 506]
Length = 363
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 171/390 (43%), Gaps = 77/390 (19%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM--------GDS-----FVEQGQMKPIRKIK 157
W K +F E+ +Q G V+++ + G S E+ Q+ I+
Sbjct: 20 WFKTHFPELSFGHLQKLLRSGQVRVDGGRVKTNTRLSSGQSVRIPPLEEKPQLSAADHIE 79
Query: 158 TNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY--LRRLVKYRDSAILVL 215
E + G P EG ++R D + D+ D L+ + + D +LVL
Sbjct: 80 AEEAIARGEAPPRPPRNGEG--ARRSDLAAPAVKRASVDDKDAAALKAMTLFEDRDVLVL 137
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLL 275
NKP + ++G + +D + A L D + P+LVHR+D+++SG+LL+ +++ + S L
Sbjct: 138 NKPYGLAVQGGSGTYRHVDGMLEA-LRGDDGQKPRLVHRIDKDTSGILLVAKSRLAASTL 196
Query: 276 TWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERI 335
F +S+S K YWALV G P+ QG I L+K D ER+
Sbjct: 197 AKTF----RSRSARKV-----------YWALVPGVPRPAQGRISTYLAK----DEAAERM 237
Query: 336 ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYK 395
+A++ EAS A++ Y V+ SW+ ++P+T R HQLR H A +G PIVGD K
Sbjct: 238 RVARHGDDEASH-AISYYAVVDHAAQKLSWLSMKPVTGRTHQLRAHAAH-IGHPIVGDPK 295
Query: 396 YGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLF 455
Y F W P GL + LHL R L +
Sbjct: 296 Y--FNVENWPL------------------PGGLQNR----------LHLLARRL----VI 321
Query: 456 PTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
P P L+ A +P HM+ SWN++
Sbjct: 322 P----HPRADKLIDVSAPLPPHMQQSWNVL 347
>gi|118591144|ref|ZP_01548543.1| ribosomal large subunit pseudouridine synthase C [Stappia aggregata
IAM 12614]
gi|118436220|gb|EAV42862.1| ribosomal large subunit pseudouridine synthase C [Stappia aggregata
IAM 12614]
Length = 355
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 154/333 (46%), Gaps = 61/333 (18%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++ +TN + G I +P VE + + P T AD+ + ++ + DS ++
Sbjct: 64 KRAETNTRIAKGQMIRIPPLGVELPADDKKNAKPKST-KLIADDRKAIEDMLLFEDSQVM 122
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G + +D + A N+ P+LVHRLDRE+SG++L+ RT+++
Sbjct: 123 VLNKPAGLAVQGGSGLKRHLDGMLDAYTDRKGNK-PRLVHRLDRETSGIILVARTRQAAQ 181
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F N K YWA++ G PK QG I L++ +DG+
Sbjct: 182 ELTKAFRHRNTRKI---------------YWAILAGVPKPFQGRISTFLAR---NDGEER 223
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
++ Q G + +Q A++ Y V SW+ ++P+T R HQLR H A +G PI+GD
Sbjct: 224 MQVVRQ--GEDEAQHAVSLYSVFEKSGQKLSWVTMKPVTGRTHQLRAHAAH-IGHPIIGD 280
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY F W ++P G + ++ LHL R +
Sbjct: 281 DKY--FNIENW-ELP------------------------GGIQNR---LHLLARRI---- 306
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ P P G + A +P HM+ +WNL+
Sbjct: 307 VIP----HPSGHGTIDVSAPLPPHMQQTWNLLG 335
>gi|148256356|ref|YP_001240941.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
sp. BTAi1]
gi|146408529|gb|ABQ37035.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
sp. BTAi1]
Length = 458
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ L+ + Y D +LVLNKP + ++G + +D + + + P+LVHR+DR
Sbjct: 214 LESLKAMTLYEDDDVLVLNKPVGLAVQGGSGMTRHIDQMLEV-MRDAKGQKPRLVHRIDR 272
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + + LT F +S+S K YWALV G PK KQG
Sbjct: 273 ETSGCLLIAKTRFAATHLTGAF----RSRSARKI-----------YWALVAGVPKPKQGR 317
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K D+G+ + I+ G E + A+T Y V+ N +W+ L+P+T R HQ
Sbjct: 318 ISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVVEASANKLAWVSLKPVTGRTHQ 374
Query: 378 LRVHCAEALGTPIVGDYKY 396
LR H A +G PIVGD KY
Sbjct: 375 LRAHMAH-IGHPIVGDPKY 392
>gi|423712841|ref|ZP_17687139.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
gi|395410537|gb|EJF77091.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
Length = 327
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 140/301 (46%), Gaps = 59/301 (19%)
Query: 186 IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
+ TL DE+ L++++ Y D I V NKP + ++G + +D++ +
Sbjct: 77 VTDKTLRGQNDEV-VLKKMLLYEDPKIFVFNKPAGLAVQGGSGLTRHVDSMLEVWRNKK- 134
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
E P+LVHRLDRE+SG+LL+ R++ + LT F K+ YWA
Sbjct: 135 GEKPRLVHRLDRETSGVLLVARSRGAAQALTAAFRARETKKT---------------YWA 179
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
LV G P++KQ I + K + G R+ G+ S A++ YRVL SW
Sbjct: 180 LVRGVPRKKQDKISTWMVKEITAQGDKMRVC---EHGVPGSNHAVSYYRVLDTRGRVLSW 236
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRP 425
+E+ P T R HQLRVH A + PI+GD KY +F W ++P
Sbjct: 237 LEMEPHTGRTHQLRVHAAH-MDHPIIGDSKY-FFADSNW-ELP----------------- 276
Query: 426 DGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
G + ++ LHLH R ++ + P G LL VA +P HM S+NL+
Sbjct: 277 -------GGIQNR---LHLHARRIRIPH--------PSG-GLLDIVAPLPPHMVQSFNLL 317
Query: 486 S 486
+
Sbjct: 318 A 318
>gi|433775466|ref|YP_007305933.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
gi|433667481|gb|AGB46557.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
Length = 326
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 152/332 (45%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K + +EPG + +P V+ K+ ++ +G N + D L +++ + D + V
Sbjct: 49 RVKADTRVEPGQMVRVPPLEVD----KKGESALTGHSIRNQGDADVLAKMLIHEDPKVFV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V ++D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 105 FNKPAGLAVQGGSGVTRNVDDMLEAWRSQK-GEKPRLVHRLDRDTSGVLVVARTRLAAMK 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
L+ F K+ YWALV G P +++ I L K DG R
Sbjct: 164 LSEAFRARETKKT---------------YWALVKGVPPKREDKISTWLIKEATPDGDRVR 208
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G + + A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 209 IAA---HGEKGADHAVSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAAH-IGCPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY E + + P G+ + LHLH R + +
Sbjct: 265 KY---------------FEADTNWDF----PGGIQNR----------LHLHARRI----I 291
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P PD ++ A MP HM+ SWNL+
Sbjct: 292 IP----HPD-KGVIDVTAPMPPHMRQSWNLIG 318
>gi|384218112|ref|YP_005609278.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
japonicum USDA 6]
gi|354957011|dbj|BAL09690.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
japonicum USDA 6]
Length = 404
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 143/300 (47%), Gaps = 60/300 (20%)
Query: 188 SGTLNPNADE-IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
+G L+ A + + L+ + Y D +LVLNKP + ++G + +D + +
Sbjct: 149 AGELSEGAQKTLAALKEMTIYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEV-MRDSRG 207
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
+ P+LVHR+DRE+SG LL+ +T+ + S LT F +S+S K YWAL
Sbjct: 208 QKPRLVHRIDRETSGCLLIAKTRFAASHLTGAF----RSRSARKT-----------YWAL 252
Query: 307 VIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
V G PK KQG I L+K +D RI AQ+ G E + A+T Y V+ N +W+
Sbjct: 253 VPGLPKPKQGRISTFLAKEESEDDTIMRI--AQH-GDEGASHAVTYYAVVETAGNKLTWV 309
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPD 426
L+P+T R HQLR H E +G PIVGD KY F W+ P
Sbjct: 310 SLKPVTGRTHQLRAHM-EHIGHPIVGDAKY--FNIENWQL------------------PG 348
Query: 427 GLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
GL + LHL R + + P P G ++ A +P HM+ SWNL+
Sbjct: 349 GLQNR----------LHLLARRI----VIP----HPRG-GVIDATAPLPPHMQQSWNLLG 389
>gi|13470583|ref|NP_102152.1| ribosomal large subunit pseudouridine synthase C [Mesorhizobium
loti MAFF303099]
gi|14021325|dbj|BAB47938.1| ribosomal large subunit pseudouridine synthase C [Mesorhizobium
loti MAFF303099]
Length = 326
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 156/332 (46%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K + +EPG + +P V+ K+ ++ +G N + D L +++ + D + V
Sbjct: 49 RVKADSRVEPGQVVRIPPLEVD----KKGESALTGHSIRNQGDADVLAKMLIHEDPKVFV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V ++D + A E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 105 FNKPAGLAVQGGSGVTRNVDDMLEA-WRNQKGEKPRLVHRLDRDTSGVLVVARTRLAAMK 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
L+ F K+ YWALV G P +++ I L K +DG +R
Sbjct: 164 LSEAFRARETKKT---------------YWALVKGVPPKREDKISTWLIKEPTEDG--DR 206
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ +A + G + + A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 207 VRVAAH-GEKGADHAVSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAA-YIGCPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY E + + P G+ + LHLH R + +
Sbjct: 265 KY---------------FEADTNWDF----PGGIQNR----------LHLHARRI----I 291
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P PD L+ A MP HM+ SWNL+
Sbjct: 292 IP----HPD-KGLIDVTAPMPPHMRQSWNLIG 318
>gi|378825699|ref|YP_005188431.1| ribosomal large subunit pseudouridine synthase C [Sinorhizobium
fredii HH103]
gi|365178751|emb|CCE95606.1| K06179 ribosomal large subunit pseudouridine synthase C
[Sinorhizobium fredii HH103]
Length = 357
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 158/333 (47%), Gaps = 62/333 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLN-PNADEIDYLRRLVKYRDSAIL 213
+ K++ ++PG I +P V+ + +K + P G + ++ + + L R+V + D+ ++
Sbjct: 76 RAKSDTRIQPGQTIRVPPLGVDAKETK---SGPIGGRDLRHSSDGELLSRMVLHEDAKVI 132
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G V +D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 133 VLNKPAGLAVQGGSGVSRHIDKMLEAWTSQK-GEKPRLVHRLDRDTSGVLVIARTRGAAQ 191
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F + + K YW+LV G P++++ I L K DG
Sbjct: 192 QLTAAFRERDTRKI---------------YWSLVKGVPRKREDRISTWLVKEQTPDGDRM 236
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
RI G + + A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 237 RIA---KHGDDGADHAISYYRIVEQAGQNLAWLEMEPYTGRTHQLRVHAAH-IGHPIIGD 292
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY F D+ T P G+ + LHLH R +
Sbjct: 293 PKY--F---------EADVNWTF--------PGGMQNR----------LHLHARCID--- 320
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P+G L+ A +P HM SWNL+
Sbjct: 321 -IP----HPNG-GRLKITAPLPPHMVQSWNLLG 347
>gi|395784154|ref|ZP_10463993.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
gi|395423909|gb|EJF90097.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
Length = 326
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 156/333 (46%), Gaps = 62/333 (18%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
R++KT+ + G I +P V+ +K+ ++ T++ + D++ L ++ Y+D I
Sbjct: 47 RRVKTDIRLVIGQSIRVPFLSVD---NKKNLSVTDKTIH-DQDKLAILEEMLLYKDPKIF 102
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G + +D + + E P+LVHRLDRE+SG+L++ R++ +
Sbjct: 103 VLNKPAGLAVQGGSGLTCHIDGMLEVWRNKK-GEKPRLVHRLDRETSGVLIIARSRGAAQ 161
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F K+ YWALV G P++KQ I + K G
Sbjct: 162 ALTAAFRARETKKT---------------YWALVRGVPRKKQDKISTWMVKETTTQGDKM 206
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
R+ G S A++ YRVL SW+E+ P T R HQLRVH A + PI+GD
Sbjct: 207 RVC---EHGEPDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAA-YMNHPIIGD 262
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY +F W ++P G + ++ LHLH R ++
Sbjct: 263 SKY-FFSDNNW-ELP------------------------GGIQNR---LHLHARRIR--- 290
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P P G +L +A +P HM S+NL++
Sbjct: 291 -IP----HPSG-GILDIIAPLPPHMVQSFNLLA 317
>gi|395779785|ref|ZP_10460254.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
gi|395420160|gb|EJF86445.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
Length = 327
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 104/377 (27%), Positives = 165/377 (43%), Gaps = 80/377 (21%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM-GDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
W K ++ + +Q G ++++ + D+ + GQ + + NE +
Sbjct: 21 WFKVHYSGLGFGYLQKLLRSGQIRVDGGRVKADTRIFTGQFVRVPPLAVNE------KEC 74
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
PV+ TL DE+ L++++ Y D I V NKP + ++G +
Sbjct: 75 FPVT--------------DKTLRGQNDEV-VLKKMLLYEDPKIFVFNKPAGLAVQGGSGL 119
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
+D++ + E P+LVHRLDRE+SG+LL+ R++ + LT F K+
Sbjct: 120 TRHVDSMLEVWRNKK-GEKPRLVHRLDRETSGVLLVARSRGAAQALTAAFRARETKKT-- 176
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
YWALV G P++KQ I + K + G R+ G+ S A
Sbjct: 177 -------------YWALVRGVPRKKQDKISTWMVKEITAQGDKMRVC---EHGVPDSNHA 220
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR 409
++ YRVL SW+E+ P T R HQLRVH A + PI+GD KY +F W ++P
Sbjct: 221 VSYYRVLDTRGRVLSWLEMEPHTGRTHQLRVHAAH-IDHPIIGDSKY-FFADSNW-ELP- 276
Query: 410 VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLR 469
G + ++ LHLH R ++ + P G LL
Sbjct: 277 -----------------------GGIQNR---LHLHARRIRIPH--------PSG-GLLD 301
Query: 470 FVASMPSHMKISWNLMS 486
VA +P HM S+NL++
Sbjct: 302 IVAPLPPHMVQSFNLLA 318
>gi|46201801|ref|ZP_00054336.2| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 324
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 138/290 (47%), Gaps = 50/290 (17%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F V +++ G V+++ ++ K+N+ +E G I +
Sbjct: 15 WFKRHFPTVGHGLLEKWLRAGNVRVDG----------------KRAKSNQRLEAGQAIRV 58
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNA-DE--IDYLRRLVKYRDSAILVLNKPPKVPLKGHL 227
P D P P DE LR V Y D ++ LNKPP + ++G
Sbjct: 59 PPLPA--------DEAPVREAKPVVVDEKIARMLRDAVLYMDDDVIALNKPPGLAVQGGT 110
Query: 228 PVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKS 287
+ + AL + PKLVHRLD+++SG+LL+GRT + S L F KS+S
Sbjct: 111 GMADKHLDAWLDALCFGAGR-PKLVHRLDKDTSGVLLLGRTANAASKLAAAF----KSRS 165
Query: 288 LSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQ 347
K YWALV G P+ QG I APL+K+ G E++ + + G +
Sbjct: 166 ARKC-----------YWALVAGVPRYPQGRIDAPLAKLPGKAG--EKMAVDKEEG----K 208
Query: 348 EAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
A+T YRV+ + +W+E+ P T R HQLR HC LGTPI+GD KYG
Sbjct: 209 HAVTYYRVVDSTLKRAAWLEMEPRTGRTHQLRAHCL-LLGTPIMGDGKYG 257
>gi|418937635|ref|ZP_13491253.1| pseudouridine synthase, RluA family [Rhizobium sp. PDO1-076]
gi|375055679|gb|EHS51921.1| pseudouridine synthase, RluA family [Rhizobium sp. PDO1-076]
Length = 340
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 159/333 (47%), Gaps = 63/333 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLN-PNADEIDYLRRLVKYRDSAIL 213
++KT+ ++PG + +P V+ ++ + P G+ + ++++ + L R++ + D ++
Sbjct: 58 RVKTDARVQPGQVVRIPPLDVDLKVK----SGPIGSHDLKHSEDGELLSRMLLHEDEKVI 113
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G + +D + A S E P+LVHRLDR++SG+L++ +T+ +
Sbjct: 114 VLNKPAGLAVQGGSGLVRHIDKMLEAWTSKK-GEKPRLVHRLDRDTSGVLVVAKTRGAAQ 172
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F + + K+ YWALV G P+++ I L K D+G
Sbjct: 173 KLTAAFRERDTKKT---------------YWALVKGVPRKQSDKISTWLVKDQTDEGDRM 217
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
R+ G + + A++ YRVL + +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 218 RVC---KHGEDGADHAISYYRVLETAAHTFAWLEMEPYTGRTHQLRVH-ALYMGHPIIGD 273
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY + + P G VQK LHLH R + +
Sbjct: 274 PKY-------------------FDEDHNWDFPGG--VQK--------RLHLHARHIDIPH 304
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
PDG L+ A +P HM +WNL
Sbjct: 305 --------PDG-GRLKVTAPLPPHMVQTWNLFG 328
>gi|386402208|ref|ZP_10086986.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
gi|385742834|gb|EIG63030.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. WSM1253]
Length = 405
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 173/386 (44%), Gaps = 78/386 (20%)
Query: 107 TAVSWVKYYFDEVQ---DSVIQSHFNKGLVQMECANMGDSFVEQGQMK-PIRKIKTNEVM 162
T V VK DE D +++HF GL + V +G+++ +++ + + +
Sbjct: 77 TKVQTVKVTADENNMRVDRFLEAHF-PGLSFSHIQRV----VRKGELRVDGKRVDSKDRL 131
Query: 163 EPGARIFLPVSMVEGRISKRYDT--IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPK 220
E G + +P + DT P+ + L+ + Y D +LVLNKP
Sbjct: 132 EEGQSVRIP--------PLKLDTPKAPNPQSEAAQKTLAALKEMTIYEDDDVLVLNKPAG 183
Query: 221 VPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFS 280
+ ++G + +D + + + P+LVHR+DRE+SG LL+ +T+ + S LT F
Sbjct: 184 LAVQGGSGMTRHIDQMLEV-MRDSKGQKPRLVHRIDRETSGCLLVAKTRFAASHLTGAF- 241
Query: 281 DVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQN 340
+S+S K YWALV G PK KQG I L+K +D RI AQ+
Sbjct: 242 ---RSRSARKT-----------YWALVPGLPKPKQGRISTFLAKEESEDDTIMRI--AQH 285
Query: 341 SGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFV 400
G E + A+T Y V+ N +W+ L+P+T R HQLR H E +G PIVGD KY F
Sbjct: 286 -GDEGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQLRAHM-EHIGHPIVGDPKY--FN 341
Query: 401 HRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSS 460
W+ P GL + LHL R + + P
Sbjct: 342 IENWQL------------------PGGLQNR----------LHLLARRI----VIP---- 365
Query: 461 KPDGPDLLRFVASMPSHMKISWNLMS 486
P G + A +P HM+ SWNL+
Sbjct: 366 HPRG-GFIDATAPLPQHMQQSWNLLG 390
>gi|220926865|ref|YP_002502167.1| RluA family pseudouridine synthase [Methylobacterium nodulans ORS
2060]
gi|219951472|gb|ACL61864.1| pseudouridine synthase, RluA family [Methylobacterium nodulans ORS
2060]
Length = 457
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 161/347 (46%), Gaps = 69/347 (19%)
Query: 143 SFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNAD-EIDY 200
S V +G+++ ++ K + +EPGA + +P + D PS A+ ++ +
Sbjct: 162 SLVRKGELRVNGKRAKAADRVEPGASVRVP--------PLKLDAPPSSPSPARAESDLAF 213
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
LR LV Y D ++VLNKP + ++G +D L A + D + P+LVHRLD++++
Sbjct: 214 LRSLVLYEDQDMMVLNKPFGLAVQGGSGTKRHVDGLLEALRTPD-GQKPRLVHRLDKDTA 272
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++ +++ + + L F A + YWAL G P+ +QG I
Sbjct: 273 GCLVVAKSRLAAATLAKTFR---------------SRAARKIYWALAAGVPRVRQGRIST 317
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+K + D R+ +AQ+ G E + A+T Y V+ SW+ L+P+T R HQLR
Sbjct: 318 YLAKEEMGDADA-RMRVAQH-GDEGASHALTYYAVVDQAGQKLSWLSLKPVTGRTHQLRA 375
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
H A +G P+VGD KY DIE P GL +
Sbjct: 376 HAAH-IGHPLVGDPKY-------------FDIE-------NWELPGGLQNR--------- 405
Query: 441 LLHLHCRELKSDNLFP-TLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P ++KP + A +P HM SWNL+
Sbjct: 406 -LHLLARRI----VIPHPRTNKP-----VDVTAPLPPHMAQSWNLLG 442
>gi|414341387|ref|YP_006982908.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans H24]
gi|411026722|gb|AFV99976.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
oxydans H24]
gi|453330666|dbj|GAC87412.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
thailandicus NBRC 3255]
Length = 330
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 20/197 (10%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ ++V Y+D +LVL+KP + +G + +D + D + P+LVHR+DR++S
Sbjct: 86 IEKMVIYQDDHLLVLDKPSGLATQGGPGITKHVDMMLDGLRKEDGDR-PRLVHRIDRDTS 144
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+LL+ RT + L F + K+ YWA+V+G P + GII
Sbjct: 145 GILLIARTPGVAAKLAAAFRGRDVGKT---------------YWAIVVGRPAQASGIIDQ 189
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL+K+ +++A + G E + A +EY + SW+ L PLT R HQLRV
Sbjct: 190 PLAKIGA---GGAALVVAASRGEEDAVSAKSEYETIDAAGKKFSWLALSPLTGRTHQLRV 246
Query: 381 HCAEALGTPIVGDYKYG 397
HC E+LGTPIVGD +YG
Sbjct: 247 HC-ESLGTPIVGDPRYG 262
>gi|170744410|ref|YP_001773065.1| RluA family pseudouridine synthase [Methylobacterium sp. 4-46]
gi|168198684|gb|ACA20631.1| pseudouridine synthase, RluA family [Methylobacterium sp. 4-46]
Length = 469
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 160/347 (46%), Gaps = 69/347 (19%)
Query: 143 SFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNAD-EIDY 200
S V +G+++ ++ K + +EPGA + +P + D G A+ ++ Y
Sbjct: 174 SLVRKGELRVNGKRAKAADRVEPGASVRVP--------PLKLDAAKPGPSPARAESDLAY 225
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
LR LV Y D ++VLNKP + ++G +D L A + D + P+LVHRLD++++
Sbjct: 226 LRSLVLYEDQDMMVLNKPYGLAVQGGSGTKRHVDGLLEALRAPD-GQKPRLVHRLDKDTA 284
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++ +T+ + + L F A + YWAL G PK +QG +
Sbjct: 285 GCLVIAKTRLAAATLAKTFR---------------SRAARKIYWALAAGVPKVRQGRVST 329
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+K + + R+ +AQ+ G E + A+T Y V+ SW+ L+P+T R HQLR
Sbjct: 330 YLAKEEVGEADA-RMRVAQH-GDEGASHALTYYAVVDQAGQKLSWLSLKPVTGRTHQLRA 387
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
H A +G P+VGD KY DIE P GL +
Sbjct: 388 HAAH-IGHPLVGDPKY-------------FDIE-------NWELPGGLQNR--------- 417
Query: 441 LLHLHCRELKSDNLFP-TLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P ++KP + A +P HM SWNL+
Sbjct: 418 -LHLLARRI----VIPHPRTNKP-----VDVTAPLPPHMAQSWNLLG 454
>gi|440796370|gb|ELR17479.1| RNA pseudouridine synthase, putative [Acanthamoeba castellanii str.
Neff]
Length = 509
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 126/261 (48%), Gaps = 61/261 (23%)
Query: 191 LNPNADEIDYLRRL-VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP 249
+NP ++E L + V Y+DS ++ LNKPP +P++G V ++ +AL +D E P
Sbjct: 214 MNPLSEEDTKLAQSWVIYKDSRLIALNKPPGLPVQGGSDVGDNHLGRFLSALKFDKEEVP 273
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
+LVHRLD+E SG+L+MGR++ + T LF K+K ++K
Sbjct: 274 RLVHRLDKECSGVLIMGRSRADAAHFTSLF----KNKHVTK------------------- 310
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
+ G + PL ++ + + +A N E ++ A+T Y N S++EL
Sbjct: 311 ----QSGRLAVPLKEL------GQGMGVAANMQDEGAKMAVTRYETRADATNEVSFVELW 360
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLD 429
P T RKHQLRVHCAE L PI+GD KYG + R ++
Sbjct: 361 PWTGRKHQLRVHCAEVLKAPILGDDKYG-----SREAFDRFEL----------------- 398
Query: 430 VQKGSVLSKVPLLHLHCRELK 450
+L + LHLHCR L+
Sbjct: 399 -----MLDNIDNLHLHCRSLE 414
>gi|410942981|ref|ZP_11374722.1| ribosomal large subunit pseudouridine synthase C [Gluconobacter
frateurii NBRC 101659]
Length = 330
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 20/197 (10%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ ++V Y+D +LVL+KP + +G + +D + D + P+LVHR+DR++S
Sbjct: 86 IEKMVIYQDDHLLVLDKPSGLATQGGPGITKHVDMMLDGLRKEDGDR-PRLVHRIDRDTS 144
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+LL+ RT + L F + K+ YWA+V+G P + GII
Sbjct: 145 GILLIARTPGVAAKLAAAFRGRDVGKT---------------YWAIVVGRPAQASGIIDQ 189
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL+K+ +++A + G E + A +EY + SW+ L PLT R HQLRV
Sbjct: 190 PLAKIGA---GGAALVVAASRGEEDAVSAKSEYETIDAAGKKFSWLALSPLTGRTHQLRV 246
Query: 381 HCAEALGTPIVGDYKYG 397
HC E+LGTPIVGD +YG
Sbjct: 247 HC-ESLGTPIVGDPRYG 262
>gi|90417736|ref|ZP_01225648.1| ribosomal large subunit pseudouridine synthase C [Aurantimonas
manganoxydans SI85-9A1]
gi|90337408|gb|EAS51059.1| ribosomal large subunit pseudouridine synthase C [Aurantimonas
manganoxydans SI85-9A1]
Length = 328
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 24/243 (9%)
Query: 155 KIKTNEVMEPGARIFLP-VSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+ KT+ ++PG + +P +S GR + + + T+ D+ + L +++ Y D +
Sbjct: 49 RAKTDTRVQPGQMVRIPPMSGDAGR--PKIGPLTANTMRDKHDD-EVLSQMLIYEDEKVF 105
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
V NKP + ++G ++ +D + A S E P+LVHRLDR++SG+L++ RT+ + +
Sbjct: 106 VFNKPAGLAVQGGSGLNRHVDKMLEAWRSRK-GEKPRLVHRLDRDTSGVLVVARTRGAAT 164
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F + + K+ YWA++ G P +G I L K DG +
Sbjct: 165 ALTKAFRERDTKKT---------------YWAILKGVPVPHEGRISTFLVKEQTPDG--D 207
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
R+ A++ G E + A+T YRV+ + SW+E+ P T R HQLRVH +G PI+GD
Sbjct: 208 RMRTAKH-GEEGADHALTHYRVIENLAQNFSWVEMEPYTGRTHQLRVHALH-IGNPILGD 265
Query: 394 YKY 396
KY
Sbjct: 266 PKY 268
>gi|239831992|ref|ZP_04680321.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
gi|444308588|ref|ZP_21144233.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
gi|239824259|gb|EEQ95827.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
gi|443488171|gb|ELT50928.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
Length = 326
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 132/288 (45%), Gaps = 58/288 (20%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D L +++ Y D + V NKP + ++G V +D + A E P+LVHR+DR+
Sbjct: 89 DVLSQMLLYEDPKVYVFNKPAGLAVQGGSGVTRHIDGMLEA-WRNKKGEKPRLVHRIDRD 147
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+L++ RT+ + LT F + + K+ YWALV G P++++ I
Sbjct: 148 TSGVLVVARTRGAAQALTAAFRERDTKKT---------------YWALVKGVPRKREDKI 192
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
L K DG R+ G S A++ YR++ N +W+E+ P T R HQL
Sbjct: 193 STWLVKDQTPDGDKMRVC---QHGEPDSDHAVSYYRIIEKAGNNLTWLEMEPYTGRTHQL 249
Query: 379 RVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSK 438
RVH A +G PI+GD KY + + W+ P G+ +
Sbjct: 250 RVHAA-YIGHPIIGDPKY-FEADQNWE------------------FPGGIQKR------- 282
Query: 439 VPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ N P G ++ A +P HM SWNL+
Sbjct: 283 ---LHLHARRIRIPN--------PSG-GIIDVTAPLPPHMVQSWNLLG 318
>gi|395767190|ref|ZP_10447725.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
gi|395414503|gb|EJF80945.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
Length = 327
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 138/291 (47%), Gaps = 58/291 (19%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+ L++++ Y D + V NKP + ++G + +D++ A + E P+LVHRL
Sbjct: 86 DDGTVLKKMLLYEDPKVFVFNKPAGLAVQGGSGLTRHVDSMLEAWRNKK-GEKPRLVHRL 144
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DRE+SG+L++ R++ + LT F + K+ YWALV G P++KQ
Sbjct: 145 DRETSGVLIVARSRSAAQALTAAFRERETKKT---------------YWALVRGVPRKKQ 189
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I + K + + G R+ G S A++ YRVL SW+E+ P T R
Sbjct: 190 DKISTWMVKEVTEQGDKMRVC---EHGEPDSNHAVSYYRVLDTRGRTLSWLEMEPYTGRT 246
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A + PI+GD KY +F W ++P G +
Sbjct: 247 HQLRVHAAH-IDHPIIGDSKY-FFSDSNW-ELP------------------------GGI 279
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
++ LHLH R ++ + P G LL +A +P HM S+NL++
Sbjct: 280 QNR---LHLHARRIRIPH--------PSG-GLLDVIAPLPPHMLQSFNLLA 318
>gi|319408734|emb|CBI82391.1| ribosomal large subunit pseudouridine synthase C [Bartonella
schoenbuchensis R1]
Length = 326
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 156/333 (46%), Gaps = 62/333 (18%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
R++KT+ + G I +P V+ +K+ ++ T++ A ++ L +++ Y+D I
Sbjct: 47 RRVKTDIRLIVGQSIRVPFLSVD---NKKNLSVTDKTIHDQA-KLAILEKMLLYKDPKIF 102
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G + +D + + E P+LVHRLDRE+SG+L++ R++ +
Sbjct: 103 VLNKPAGLAVQGGSGLTCHIDGMLEVWRNKK-GEKPRLVHRLDRETSGVLIIARSRGAAQ 161
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F K+ YWALV G P++KQ I + K G
Sbjct: 162 ALTAAFRARETKKT---------------YWALVRGVPRKKQDKISTWMVKETTAQGDKM 206
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
R+ G S A++ YRVL SW+E+ P T R HQLRVH A + PI+GD
Sbjct: 207 RVC---EHGEPDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAA-YMDHPIIGD 262
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY +F W ++P G + ++ LHLH R ++ +
Sbjct: 263 SKY-FFSDNNW-ELP------------------------GGIQNR---LHLHARRIRIPH 293
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P G +L +A +P HM S+NL++
Sbjct: 294 --------PSG-GILDIIAPLPPHMVQSFNLLA 317
>gi|406923072|gb|EKD60332.1| hypothetical protein ACD_54C00808G0002 [uncultured bacterium]
Length = 346
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 166/381 (43%), Gaps = 75/381 (19%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K F V ++ G V+++ A + K ++ + PG I +
Sbjct: 21 WFKKRFPHVTQGHVEKMCRTGQVRVDSA----------------RCKASDRVIPGQTIRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P E + R +G+++ ADE ++ V ++D I++LNKPP +P +G
Sbjct: 65 PPLPDESAPAPRR----AGSIS-AADE-KMIQNAVLWKDEHIIILNKPPGLPSQGGSGQG 118
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+ AL + Y E PKLVHRLD+++SGLL++ RT +++
Sbjct: 119 DRHVDGLCEALKFGYKEKPKLVHRLDKDTSGLLMLARTDR-----------------VAR 161
Query: 291 AWNDACEAMYQR--YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIIL---AQNSGLEA 345
A ++A R YWA V G P ++G I L K G E++I A+ +
Sbjct: 162 ALSEALRHRLTRKIYWAAVAGVPHPRKGSIKYGLMKAGGGRGGDEKMICVHPAKMADFPE 221
Query: 346 SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
++ A T+Y VL + N SW+ L P+T R HQLR H AE +G PI+GD KYG
Sbjct: 222 AKRAQTDYFVLWFLGNRLSWMALEPVTGRTHQLRAHMAE-MGHPIIGDGKYGGGTTENMG 280
Query: 406 QMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGP 465
G LS+ LHLH R LK + P
Sbjct: 281 DG--------------------WGAGMGGDLSRK--LHLHARMLKVQH--------PITK 310
Query: 466 DLLRFVASMPSHMKISWNLMS 486
+++ ++A +P HM+ +W +
Sbjct: 311 EMMTWIAPLPEHMQRTWKTLD 331
>gi|403530661|ref|YP_006665190.1| ribosomal large subunit pseudouridine synthase c [Bartonella
quintana RM-11]
gi|403232732|gb|AFR26475.1| ribosomal large subunit pseudouridine synthase c [Bartonella
quintana RM-11]
Length = 327
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 135/291 (46%), Gaps = 58/291 (19%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+ L++++ Y DS I V NKP + ++G + D++ + E P+LVHRL
Sbjct: 86 DDRVILKKMLLYEDSKIFVFNKPAGLAVQGGSGLTRHFDSMLEVWRNKK-GEKPRLVHRL 144
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DRE+SG+L++ R++ + LT F K+ YWALV G PK+KQ
Sbjct: 145 DRETSGVLIVARSRGAAQTLTAAFRARETKKT---------------YWALVRGVPKKKQ 189
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I + K + G R+ G S A++ YRVL SW+E+ P T R
Sbjct: 190 DKISTWVVKDITAQGDKMRVC---EHGEPDSNHAVSYYRVLDTRGRALSWLEMEPYTGRT 246
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A + PI+GD KY +F WK +PR G+ +
Sbjct: 247 HQLRVHAA-YMDNPIIGDSKY-FFSDSNWK-LPR-----------------GIQNR---- 282
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ + P G +L VA +P HM S+NL++
Sbjct: 283 ------LHLHARRIRIPH--------PSG-GILDIVAPLPPHMVQSFNLLA 318
>gi|451940782|ref|YP_007461420.1| ribosomal large subunit pseudouridine synthase C [Bartonella
australis Aust/NH1]
gi|451900169|gb|AGF74632.1| ribosomal large subunit pseudouridine synthase C [Bartonella
australis Aust/NH1]
Length = 327
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 152/339 (44%), Gaps = 66/339 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGR--------ISKRYDTIPSGTLNPNADEIDYLRRLVKY 207
+++ +V G R+ + +V G+ + ++ + + D+ L++++ Y
Sbjct: 38 LRSGQVRVDGGRVKADIRLVTGQSIRVPPLSVDEKKILFTTSKMTDGQDDGAILKKMLLY 97
Query: 208 RDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGR 267
DS I V NKP + ++G + +D + + E P+LVHRLDRE+SG+L++ R
Sbjct: 98 EDSKIFVFNKPAGLAVQGGSGLTQHVDGMLGVWRNKK-GERPRLVHRLDRETSGVLVVAR 156
Query: 268 TKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLL 327
++ + LT F ++K + YWALV G P++K+ I + K
Sbjct: 157 SRGAAQALTSAFR-ARETKKI--------------YWALVRGIPRKKKDKISTWMVKETT 201
Query: 328 DDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALG 387
G RI G S A++ YRVLG SW+E+ P T R HQLRVH A +G
Sbjct: 202 AQGDKMRIC---GHGEPDSSHAISYYRVLGTRGRALSWLEMEPHTGRTHQLRVHAA-YMG 257
Query: 388 TPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCR 447
PI+GD KY +F W+ P G+ + LHLH
Sbjct: 258 HPIIGDSKY-FFSDSNWEL------------------PGGIQNR----------LHLHAH 288
Query: 448 ELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
++ + P G +L A +P HM S+NL++
Sbjct: 289 RIRIPH--------PSG-GVLDITAPLPPHMVQSFNLLA 318
>gi|395787674|ref|ZP_10467266.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
gi|395410296|gb|EJF76851.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
Length = 327
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 150/340 (44%), Gaps = 68/340 (20%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRI---------SKRYDTIPSGTLNPNADEIDYLRRLVK 206
+++ ++ G R+ ++ G++ K I TL DE L++++
Sbjct: 38 LRSGQIRVDGGRVKTDTRLLMGQVVRVPPFPVDDKESFPITDKTLRGQDDET-VLKKMLL 96
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMG 266
Y D I V NKP + ++G + +D++ + E P+LVHRLDRE+SG+L++
Sbjct: 97 YEDPKIFVFNKPAGLAVQGGSGLTRHVDSMLEVWRNKK-GEKPRLVHRLDRETSGVLIVA 155
Query: 267 RTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
R++ + LT F + K+ YWALV G PK+KQ I + K +
Sbjct: 156 RSRSAAQALTAAFRERETKKT---------------YWALVRGVPKKKQDKISTWVVKDI 200
Query: 327 LDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEAL 386
G R+ G S A++ YRVL SW+E+ P T R HQLRVH A +
Sbjct: 201 TAQGDKMRVC---EHGEPDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAAH-M 256
Query: 387 GTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHC 446
PI+GD KY +F W P G+ + LHLH
Sbjct: 257 DHPIIGDSKY-FFSDSNWAL------------------PGGIQNR----------LHLHA 287
Query: 447 RELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
R ++ + P G +L +A +P HM S+NL++
Sbjct: 288 RRIRIPH--------PSG-GVLDIIAPLPPHMVQSFNLLA 318
>gi|395777982|ref|ZP_10458495.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|423715908|ref|ZP_17690129.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
gi|395418291|gb|EJF84618.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|395429210|gb|EJF95284.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
Length = 327
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 133/291 (45%), Gaps = 58/291 (19%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+ L++++ Y D + V NKP + ++G + +D++ E P+LVHRL
Sbjct: 86 DDGTVLKKMLLYEDPKVFVFNKPAGLAVQGGSGLTRHIDSMLEV-WRNKKGEKPRLVHRL 144
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DRE+SG+L++ R++ + LT F + K+ YWALV G PK+KQ
Sbjct: 145 DRETSGVLIVARSRGAAQALTAAFRERETKKT---------------YWALVRGVPKKKQ 189
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I + K + G R+ + G S A++ YRVL SW+E+ P T R
Sbjct: 190 DKISTWMVKEMTAQGDKMRVC---DHGEPDSHHAVSYYRVLESRGRALSWLEMEPYTGRT 246
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A + PI+GD KY +F W P G+ +
Sbjct: 247 HQLRVHAAH-MDHPIIGDSKY-FFSDSNWTL------------------PGGIQNR---- 282
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ + P G +L VA +P HM S+NL+S
Sbjct: 283 ------LHLHARRIRIPH--------PSG-GILDIVAPLPPHMVQSFNLLS 318
>gi|240850791|ref|YP_002972191.1| ribosomal large subunit pseudouridine synthase C [Bartonella
grahamii as4aup]
gi|240267914|gb|ACS51502.1| ribosomal large subunit pseudouridine synthase C [Bartonella
grahamii as4aup]
Length = 327
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 136/302 (45%), Gaps = 59/302 (19%)
Query: 185 TIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYD 244
+I TL DE L++++ Y D + V NKP + ++G + MD++ +
Sbjct: 76 SITDKTLRGQDDET-VLKKMLLYEDPKVFVFNKPAGLAVQGGSGLTRHMDSMLEVWRNKK 134
Query: 245 YNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYW 304
E P+LVHRLDRE+SG+L++ R++ + LT F K+ YW
Sbjct: 135 -GEKPRLVHRLDRETSGVLIVARSRGAAQSLTAAFRARETKKT---------------YW 178
Query: 305 ALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCS 364
ALV G PK+KQ I + K + G R+ G + A++ YRVL S
Sbjct: 179 ALVRGVPKKKQDKISTWMVKEMTAQGDKMRVC---EHGEPDAHHAVSYYRVLDTRGRALS 235
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRR 424
W+E+ P T R HQLRVH A + PI+GD KY +F W
Sbjct: 236 WLEMEPYTGRTHQLRVHAA-YMDHPIIGDTKY-FFSDSNWTL------------------ 275
Query: 425 PDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNL 484
P G+ + LHLH R ++ + P G +L VA +P HM S+NL
Sbjct: 276 PGGIQNR----------LHLHARRIRIPH--------PSG-GILDIVAPLPPHMVQSFNL 316
Query: 485 MS 486
+S
Sbjct: 317 LS 318
>gi|114327246|ref|YP_744403.1| ribosomal large subunit pseudouridine synthase C [Granulibacter
bethesdensis CGDNIH1]
gi|114315420|gb|ABI61480.1| ribosomal large subunit pseudouridine synthase C [Granulibacter
bethesdensis CGDNIH1]
Length = 366
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 106/193 (54%), Gaps = 21/193 (10%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D ++VLNKP +P +G + +D L L + ++ P+LVHRLDR++SG+++
Sbjct: 125 ILYKDDHLIVLNKPSGLPSQGGPGITRHLDGLLDG-LRFGRDDRPRLVHRLDRDTSGVIV 183
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ R+ + L LF +++ K YWA+V G P +G I PL
Sbjct: 184 IARSPGVAAKLAALF----RTRETEKV-----------YWAVVAGRPVPVEGRIDRPL-- 226
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L + + E ++LA + A+T+YR L +W+ELRPLT R HQLRVHCA
Sbjct: 227 -LRQNDRNEPVVLADRKDRDKVT-AITDYRTLDHAARKLAWLELRPLTGRMHQLRVHCA- 283
Query: 385 ALGTPIVGDYKYG 397
A+ PI+GD +YG
Sbjct: 284 AMDAPILGDERYG 296
>gi|307946319|ref|ZP_07661654.1| rRNA pseudouridylate synthase C [Roseibium sp. TrichSKD4]
gi|307769983|gb|EFO29209.1| rRNA pseudouridylate synthase C [Roseibium sp. TrichSKD4]
Length = 333
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 156/333 (46%), Gaps = 61/333 (18%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++ ++N + G + +P VE + + + P + AD+ + ++ + D+ ++
Sbjct: 48 KRAESNTRIAKGQTVRIPPLGVELPANDKKNAKPKSS-KLMADDKAAIEDMMLFEDNHVM 106
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + ++G + +D + A + E PKLVHRLDRE+SG++L+ +T+++
Sbjct: 107 VLNKPAGLAVQGGSGLKRHLDGMLEA-YTNKKGEKPKLVHRLDRETSGIILVAKTRKAAQ 165
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LT F N K YWA++ G PK QG I S L + E
Sbjct: 166 ELTKAFRHRNTRKI---------------YWAMLAGVPKPHQGRI----STYLARSEEME 206
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
R+ +A++ G + +Q A++ Y V SW+ L+P+T R HQLR H A +G PI+GD
Sbjct: 207 RMRVARH-GDDEAQHAVSLYSVFEKSAQKLSWVTLKPVTGRTHQLRAHAAH-IGHPIIGD 264
Query: 394 YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDN 453
KY F W ++P G + ++ LHL R +
Sbjct: 265 DKY--FNIENW-ELP------------------------GGIQNR---LHLLARRI---- 290
Query: 454 LFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ P P G ++ A +P HM+ +WNL+
Sbjct: 291 VIP----HPSGNGMIDVSAPLPPHMQQTWNLLG 319
>gi|85715100|ref|ZP_01046084.1| pseudouridine synthase, RluD [Nitrobacter sp. Nb-311A]
gi|85698015|gb|EAQ35888.1| pseudouridine synthase, RluD [Nitrobacter sp. Nb-311A]
Length = 380
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 135/288 (46%), Gaps = 59/288 (20%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D LR++V + D+ ++VLNKP + ++G + +D + + + P+LVHRLDRE
Sbjct: 137 DELRKMVLFEDADVMVLNKPAGLAVQGGSGLSRHIDGMLET-MRDAKGQRPRLVHRLDRE 195
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
++G LL+ RT+ + + LT F + +S K YWALV G PK KQG I
Sbjct: 196 TAGCLLIARTRFAATALTGAF----RHRSARKI-----------YWALVAGVPKPKQGRI 240
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
L+K ++ + E I+ G E + A+T Y V+ +W+ L+P+T R HQL
Sbjct: 241 STYLAK---EENEEESIMRVAAHGDEGASHAVTYYAVVETSAQKLAWVSLKPVTGRTHQL 297
Query: 379 RVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSK 438
R H A +G I+GD KY F W+ P GL +
Sbjct: 298 RAHMAH-VGHAIIGDPKY--FNKENWQL------------------PGGLQNR------- 329
Query: 439 VPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P P G ++ A +P HM SWNL+
Sbjct: 330 ---LHLLARRI----VIP----HPRG-GVIDVSAPLPPHMLQSWNLLG 365
>gi|148259184|ref|YP_001233311.1| RluA family pseudouridine synthase [Acidiphilium cryptum JF-5]
gi|326402337|ref|YP_004282418.1| pseudouridine synthase [Acidiphilium multivorum AIU301]
gi|338983760|ref|ZP_08632919.1| RluA family pseudouridine synthase [Acidiphilium sp. PM]
gi|146400865|gb|ABQ29392.1| ribosomal large subunit pseudouridine synthase C [Acidiphilium
cryptum JF-5]
gi|325049198|dbj|BAJ79536.1| pseudouridine synthase [Acidiphilium multivorum AIU301]
gi|338207305|gb|EGO95283.1| RluA family pseudouridine synthase [Acidiphilium sp. PM]
Length = 324
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 112/211 (53%), Gaps = 20/211 (9%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
P T+ N ++ L + +RD+ +LV++KP + +G + +D + A L +D
Sbjct: 74 PRQTVVANEWDVKELNARILHRDADVLVIDKPAGLATQGGKGIARHLDGMLDA-LRFDAA 132
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
E P+LVHRLDR++SG+L++ R + + L F + K+ YWA+
Sbjct: 133 ERPRLVHRLDRDTSGVLVLARNAFAANRLAAAFRGRDMEKT---------------YWAI 177
Query: 307 VIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
V+G P +G I PL+++ G R + E + +A+T+YR L SW+
Sbjct: 178 VVGLPIPMEGQIDLPLARIGGAQGARTR---PADRDDEDAAKAITDYRTLDHAGRKFSWL 234
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
EL PLT R HQLR HCA A+GTPI+GD YG
Sbjct: 235 ELHPLTGRTHQLRAHCA-AIGTPILGDAPYG 264
>gi|153009413|ref|YP_001370628.1| RluA family pseudouridine synthase [Ochrobactrum anthropi ATCC
49188]
gi|404319116|ref|ZP_10967049.1| RluA family pseudouridine synthase [Ochrobactrum anthropi CTS-325]
gi|151561301|gb|ABS14799.1| pseudouridine synthase, RluA family [Ochrobactrum anthropi ATCC
49188]
Length = 326
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 148/332 (44%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
+ K + ++ G + +P V+ K + + T+ D D L +++ Y D + V
Sbjct: 49 RAKADTRIQAGQTVRIPPLGVD---EKAVGPVTARTIRSQQDG-DVLSQMLLYEDPKVYV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V +D + A E P+LVHR+DR++SG+L++ RT+ +
Sbjct: 105 FNKPAGLAVQGGSGVSRHVDGMLEA-WRNKKGEKPRLVHRIDRDTSGVLVVARTRGAAQA 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++++ I L + DG R
Sbjct: 164 LTTAFRERDTKKT---------------YWALVKGVPRKREDKISTWLVREQTPDGDKMR 208
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ G S A++ YR++ N +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 209 VC---QHGEPDSDHAVSYYRIIEKAGNNLTWLEMEPYTGRTHQLRVHAA-YIGHPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY + + W+ P G+ + LHLH R ++ N
Sbjct: 265 KY-FEADQNWE------------------FPGGIQKR----------LHLHARRIRIPN- 294
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P G + A +P HM SWNL+
Sbjct: 295 -------PSG-GTIDVTAPLPPHMVQSWNLLG 318
>gi|110678758|ref|YP_681765.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
denitrificans OCh 114]
gi|109454874|gb|ABG31079.1| ribosomal large subunit pseudouridine synthase C [Roseobacter
denitrificans OCh 114]
Length = 346
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 151/351 (43%), Gaps = 60/351 (17%)
Query: 144 FVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEG---RISKRYDTI---PSGTLNPNADE 197
+ QG+++ + + E+ G R+ + G RI DT P +A +
Sbjct: 28 LISQGRVEKM--CRKGEIRVDGGRVKAATRLEVGQQVRIPPLPDTAAPAPVARSAVSAAD 85
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ V YRD I+ +NKP +P +G +D LA A L + + + P+LVHRLD+
Sbjct: 86 ARMIQSCVIYRDDHIIAINKPAGLPTQGGSGQTRHVDGLAEA-LKFGFEDKPRLVHRLDK 144
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG+LL+ RT+ + LT K YWALV G P G
Sbjct: 145 DTSGVLLLARTRMAAKALTTAMRHKETRKI---------------YWALVAGVPTPYLGE 189
Query: 318 IHAPLSKV---LLDDGKTERIILAQNSGLE--ASQEAMTEYRVLGPMINGCSWIELRPLT 372
I L K + I L E ++ A T Y L + + SW+ + P+T
Sbjct: 190 IRYALVKAQGRGRGGEGEKMIALPPREVDETPGAKRAHTLYATLYRVGSRASWVAMEPIT 249
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
R HQLR H AE +G PI+GD KYG SG+ DG Q
Sbjct: 250 GRTHQLRAHMAE-IGHPIIGDGKYG-----------------GSGQE---NMGDGWGAQL 288
Query: 433 GSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWN 483
G V+SK LHLH R ++ ++ P+ + A MP HMK SW
Sbjct: 289 GGVISKK--LHLHARMMRFEH--------PETRKPVTITADMPDHMKQSWE 329
>gi|383771170|ref|YP_005450235.1| putative ribosomal large subunit pseudouridine synthase C
[Bradyrhizobium sp. S23321]
gi|381359293|dbj|BAL76123.1| putative ribosomal large subunit pseudouridine synthase C
[Bradyrhizobium sp. S23321]
Length = 406
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 135/289 (46%), Gaps = 59/289 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+ L+ + Y D +LVLNKP + ++G + +D + + + P+LVHR+DR
Sbjct: 162 LKALKEMTIYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEV-MRDSKGQKPRLVHRIDR 220
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + S LT F +S+S K YWALV G PK KQG
Sbjct: 221 ETSGCLLIAKTRFAASYLTGEF----RSRSARKT-----------YWALVPGLPKPKQGR 265
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K +D RI AQ+ G E + A+T Y V+ N +W+ L+P+T R HQ
Sbjct: 266 ISTFLAKEESEDDTIMRI--AQH-GDEGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQ 322
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H A +G PIVGD KY F W+ P GL +
Sbjct: 323 LRAHMAH-IGHPIVGDPKY--FNIENWQL------------------PGGLQNR------ 355
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P G ++ A +P HM SWNL+
Sbjct: 356 ----LHLLARRI--------VIPHPRG-GVIDATAPLPPHMLQSWNLLG 391
>gi|319783351|ref|YP_004142827.1| RluA family pseudouridine synthase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169239|gb|ADV12777.1| pseudouridine synthase, RluA family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 326
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 156/332 (46%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K + +EPG + +P V+ K+ ++ +G N + D L +++ + D + V
Sbjct: 49 RVKADTRVEPGQMVRVPPLEVD----KKGESALTGHSIRNQGDADVLSKMLIHEDPKVFV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V ++D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 105 FNKPAGLAVQGGSGVTRNVDDMLEAWRS-PKGEKPRLVHRLDRDTSGVLVVARTRLAAMK 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
L+ F K+ YWALV G P +++ I L K DG +R
Sbjct: 164 LSEAFRARETKKT---------------YWALVKGVPPKREDKISTWLIKEPTPDG--DR 206
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ +A + G + + A++ YRV+ +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 207 VRVAAH-GEKGADHAVSYYRVIEQAAQTMTWLEMEPYTGRTHQLRVHAA-YIGCPILGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY E + + P G+ + LHLH R + +
Sbjct: 265 KY---------------FEADTNWDF----PGGIQNR----------LHLHARRI----I 291
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
P PD ++ A MP HM+ SWNL+
Sbjct: 292 IP----HPD-KGVIDVTAPMPPHMRQSWNLIG 318
>gi|395789469|ref|ZP_10468989.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
gi|395430012|gb|EJF96064.1| RluA family pseudouridine synthase [Bartonella taylorii 8TBB]
Length = 327
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 150/340 (44%), Gaps = 68/340 (20%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRI---------SKRYDTIPSGTLNPNADEIDYLRRLVK 206
+++ ++ G R+ ++ G++ K I TL D+ L++++
Sbjct: 38 LRSGQIRVDGGRVKTDTRLLRGQVVRVPPFPIDDKESFPITDKTLR-GQDDGTVLKKMLL 96
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMG 266
Y D I V NKP + ++G + +D++ + E P+LVHRLDRE+SG+L++
Sbjct: 97 YEDPKIFVFNKPAGLAVQGGSGLARHVDSMLEVWRNKK-GEKPRLVHRLDRETSGVLIVA 155
Query: 267 RTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
R++ + LT F + K+ YWALV G PK+KQ I + K +
Sbjct: 156 RSRSAAQALTAAFRERETKKT---------------YWALVRGVPKKKQDKISTWMVKDI 200
Query: 327 LDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEAL 386
G R+ G S A++ YRVL SW+E+ P T R HQLRVH A +
Sbjct: 201 TAQGDKMRVC---EHGEPDSNHAVSYYRVLDTRGRALSWLEMEPYTGRTHQLRVHAAH-M 256
Query: 387 GTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHC 446
PI+GD KY +F W P G+ + LHLH
Sbjct: 257 DHPIIGDSKY-FFSDSNWAL------------------PGGIQNR----------LHLHA 287
Query: 447 RELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
R ++ + P G +L +A +P HM S+NL++
Sbjct: 288 RRIRIPH--------PSG-GVLDIIAPLPPHMVQSFNLLA 318
>gi|209884846|ref|YP_002288703.1| pseudouridine synthase RluD [Oligotropha carboxidovorans OM5]
gi|337741510|ref|YP_004633238.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM5]
gi|386030526|ref|YP_005951301.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM4]
gi|209873042|gb|ACI92838.1| pseudouridine synthase, RluD [Oligotropha carboxidovorans OM5]
gi|336095594|gb|AEI03420.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM4]
gi|336099174|gb|AEI06997.1| ribosomal large subunit pseudouridine synthase C [Oligotropha
carboxidovorans OM5]
Length = 412
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 59/289 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+D LR++V + D+ ++VLNKP + ++G + +D + + + P+LVHRLDR
Sbjct: 168 LDELRKMVLFEDADVMVLNKPAGLAVQGGSGLTRHVDGMLEV-MRDAKGQRPRLVHRLDR 226
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + S LT F + +S K YWALV G PK KQG
Sbjct: 227 ETSGCLLIAKTRFAASTLTGSF----RHRSARKI-----------YWALVAGVPKPKQGR 271
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K ++ + + I+ G E + A+T Y V+ +W+ L+P+T R HQ
Sbjct: 272 ISTYLAK---EENEEDSIMRIAAHGDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQ 328
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H A +G IVGD KY F W+ P GL +
Sbjct: 329 LRAHMAH-IGHAIVGDPKY--FNKENWQL------------------PGGLQNR------ 361
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P P G ++ A +P HM SWNL+
Sbjct: 362 ----LHLLARRI----VIP----HPRG-GVIDVTAPLPPHMLQSWNLLG 397
>gi|365891926|ref|ZP_09430286.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. STM 3809]
gi|365332088|emb|CCE02817.1| putative ribosomal large subunit pseudouridine synthase RluC-like
(23S RNA pseudouridylate synthase) (RNA-uridine
isomerase) (fragment) [Bradyrhizobium sp. STM 3809]
Length = 327
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 107/199 (53%), Gaps = 20/199 (10%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ L+ + Y D +LVLNKP + ++G + +D + + + P+LVHR+DR
Sbjct: 83 LESLKAMTLYEDDDVLVLNKPAGLAVQGGSGMTRHIDQMLEV-MRDAKGQKPRLVHRIDR 141
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + + LT F + +S K YWALV G PK KQG
Sbjct: 142 ETSGCLLIAKTRFAATHLTGAF----RHRSARKV-----------YWALVAGVPKPKQGR 186
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K D+G+ + I+ G E + A+T Y V+ +W+ L+P+T R HQ
Sbjct: 187 ISTYLAK---DEGEDDTIMRVAAHGDEGASHAVTYYAVVEASATKLAWVSLKPVTGRTHQ 243
Query: 378 LRVHCAEALGTPIVGDYKY 396
LR H A +G PIVGD KY
Sbjct: 244 LRAHMAH-IGHPIVGDPKY 261
>gi|347526794|ref|YP_004833541.1| pseudouridine synthase [Sphingobium sp. SYK-6]
gi|345135475|dbj|BAK65084.1| pseudouridine synthase [Sphingobium sp. SYK-6]
Length = 447
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 23/202 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D++ + LV +RD+ LV+NKPP + +G H +D L A L ++ ++ P+LVHRL
Sbjct: 96 DQMAFAESLVIHRDAQALVINKPPGLATQGGTKTHEHVDGLLDA-LMFERDDRPRLVHRL 154
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG LL+ RT + + FS S++ K YWA+V+G P
Sbjct: 155 DKDTSGALLLARTARAAAQFAKSFS----SRTARKV-----------YWAIVMGVPDVAD 199
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G+I PL+K G E++ + + +G+ A + YR++ N +W+EL+P T R
Sbjct: 200 GVIDLPLAKQPGTGG--EKMHVDEENGMPA----RSRYRIIERAGNRAAWVELQPYTGRT 253
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A A+G PIVGD KYG
Sbjct: 254 HQLRVHMA-AIGHPIVGDGKYG 274
>gi|357028779|ref|ZP_09090804.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
gi|355537479|gb|EHH06735.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
Length = 326
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K + +EPG + +P V+ K+ ++ +G N + D L +++ + D + V
Sbjct: 49 RVKADTRVEPGQMVRVPPLEVD----KKGESPLTGHSIRNQGDADVLAKMLIHEDPKVFV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V ++D + A E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 105 FNKPAGLAVQGGSGVTRNVDDMLEA-WRNQKGEKPRLVHRLDRDTSGVLVVARTRLAAMK 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
L+ F K+ YWALV G P +++ I L K DG +R
Sbjct: 164 LSEAFRARETKKT---------------YWALVKGVPPKREDKISTWLIKEPTPDG--DR 206
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ +A + G + + A++ YRV+ +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 207 VRVAAH-GEKGADHAVSYYRVIEQAAQTMTWLEMEPYTGRTHQLRVHAAH-IGCPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY E + + P G+ + LHLH R +
Sbjct: 265 KY---------------FEADTNWDF----PGGIQNR----------LHLHARRI----- 290
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ PD ++ A MP HM+ SWNL+
Sbjct: 291 ---VIPHPD-KGVIDVTAPMPPHMRQSWNLIG 318
>gi|119383542|ref|YP_914598.1| RluA family pseudouridine synthase [Paracoccus denitrificans
PD1222]
gi|119373309|gb|ABL68902.1| ribosomal large subunit pseudouridine synthase C [Paracoccus
denitrificans PD1222]
Length = 348
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 134/297 (45%), Gaps = 55/297 (18%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
+ + ++ V +RD I+ LNKPP +P +G + AL + Y + PKLVHRLD
Sbjct: 85 DAEMIQSCVLWRDEHIIALNKPPGLPSQGGSGQGDRHVDGLTTALMFGYKDRPKLVHRLD 144
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR--YWALVIGSPKE- 313
+++SG+LL+ RT +++A ++A R YWA V G P
Sbjct: 145 KDTSGVLLLARTDR-----------------IARALSEAFRHRLTRKIYWAAVAGVPHPR 187
Query: 314 ----KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
K G++ AP + K + + + E ++ A T+Y VL + SW+ +
Sbjct: 188 MGSIKYGLVKAPGRGRGGEGEKMMAVHPSAVAATEGAKRAHTDYAVLDALGGRVSWVAMV 247
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLD 429
P+T R HQLR H AE +G PIVGD KYG SG+ DG
Sbjct: 248 PVTGRTHQLRAHMAE-IGHPIVGDGKYG-----------------GSGQE---NLGDGWG 286
Query: 430 VQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
Q G +S+ LHLH R ++ ++ P L+ A +P HM +W +
Sbjct: 287 AQLGGEISR--KLHLHARMIRFEH--------PITKKLITVTAPLPEHMSRTWKTLG 333
>gi|84499811|ref|ZP_00998099.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
batsensis HTCC2597]
gi|84392955|gb|EAQ05166.1| ribosomal large subunit pseudouridine synthase C [Oceanicola
batsensis HTCC2597]
Length = 347
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 163/382 (42%), Gaps = 76/382 (19%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSF-VEQGQMKPIRKIKTNEVMEPGARIF 169
W++ F +V I+ KG ++++ + S +E GQ+ + + + EP R
Sbjct: 21 WLRRLFPQVTQGRIEKMCRKGDLRVDKGRVKSSTRLEAGQVVRVPPLPESAAPEPAPRDA 80
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
VS + R+ +R V + D I+ LNKP +P +G
Sbjct: 81 --VSEADARL---------------------IRDCVLWSDDHIVALNKPAGLPTQGGSKQ 117
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
+D L+ A L E P+LVHRLD+++SG+LL+ RT+ + LT K
Sbjct: 118 SRHVDGLSQA-LVPAGAEKPRLVHRLDKDTSGVLLLARTRVAAQGLTAALRHKQTRKI-- 174
Query: 290 KAWNDACEAMYQRYWALVIGSPKE-----KQGIIHAPLSKVLLDDGKTERIILAQNSGLE 344
YWALV G P + G++ AP + K + A+ G
Sbjct: 175 -------------YWALVAGVPTPYLGEIRYGLVKAPGHGKGGEGEKMIAVHPAEVEGTP 221
Query: 345 ASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRW 404
++ A T Y L + + SW+ L PLT R HQLR H AE +G PI+GD KYG
Sbjct: 222 GAKRAHTLYATLYRVASRASWVALEPLTGRTHQLRAHLAE-IGHPIIGDGKYG------- 273
Query: 405 KQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDG 464
SG+ DG Q G ++S+ LHLH R + ++ ++ KP
Sbjct: 274 ----------GSGQE---NLGDGWGAQLGGIISRK--LHLHARSMTFEH---PVTGKP-- 313
Query: 465 PDLLRFVASMPSHMKISWNLMS 486
+ A +P HM SW+ +
Sbjct: 314 ---VTVTAPLPDHMAESWDTLG 332
>gi|163868619|ref|YP_001609828.1| ribosomal large subunit pseudouridine synthase C [Bartonella
tribocorum CIP 105476]
gi|161018275|emb|CAK01833.1| ribosomal large subunit pseudouridine synthase C [Bartonella
tribocorum CIP 105476]
Length = 327
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 134/291 (46%), Gaps = 58/291 (19%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+ L++++ Y D + V NKP + ++G + +D++ + E P+LVHRL
Sbjct: 86 DDGTILKKMLLYEDPKVFVFNKPAGLAVQGGSGLTRHIDSMLEVWRNKK-GEKPRLVHRL 144
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DRE+SG+L++ R++ + LT F + K+ YWALV G PK+KQ
Sbjct: 145 DRETSGVLIVARSRGAAQALTAAFRERETKKT---------------YWALVRGVPKKKQ 189
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I + K + G R+ + G S A++ YRVL SW+E+ P T R
Sbjct: 190 DKISTWMVKEMTAQGDKMRVC---DHGEPDSHHAVSYYRVLDTRGRTLSWLEMEPYTGRT 246
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A + PI+GD KY +F W P G+ +
Sbjct: 247 HQLRVHAA-YMDHPIIGDSKY-FFSDSNWTL------------------PGGIQNR---- 282
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ + P G +L +A +P HM S+NL+S
Sbjct: 283 ------LHLHARRIRIPH--------PSG-GILDIIAPLPPHMVQSFNLLS 318
>gi|340028922|ref|ZP_08664985.1| ribosomal large subunit pseudouridine synthase C [Paracoccus sp.
TRP]
Length = 350
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 163/368 (44%), Gaps = 68/368 (18%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF---LPVSMVEGRISKRY 183
+G V+ C G V+ G ++K N +E G + LPV+ G + R
Sbjct: 28 QLTQGAVEKWC-RTGQLRVDGG------RVKANTRIEAGQEVRVPPLPVA-ASGPVPAR- 78
Query: 184 DTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY 243
P + + E+ ++ V +RD I+ LNKPP +P +G + AAL +
Sbjct: 79 ---PRAAVKQSDAEM--IQSCVLWRDEHIIALNKPPGLPSQGGSGQGDRHVDGLTAALMF 133
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
Y + PKLVHRLD+++SG+LL+ RT ++SLS+A+ + Y
Sbjct: 134 GYKDRPKLVHRLDKDTSGVLLLARTDRI-------------ARSLSEAFRH--RLTRKIY 178
Query: 304 WALVIGSPKE-----KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGP 358
WA V G P K G++ AP + K + + + E ++ A T++ VL
Sbjct: 179 WAAVAGVPSPRMGSIKYGLVKAPGRGRGGEGEKMMTVHPSAVASTEGAKRAHTDFAVLDA 238
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGK 418
+ + +W+ + P+T R HQLR H A +G PIVGD KYG SG+
Sbjct: 239 LGSRTAWVAMVPVTGRTHQLRAHMA-GIGHPIVGDGKYG-----------------GSGQ 280
Query: 419 PYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
DG Q G +S+ LHLH R ++ ++ P L+ A +P HM
Sbjct: 281 ENP---GDGWGAQLGGEISR--KLHLHARMIRFEH--------PITKKLITVTAPLPDHM 327
Query: 479 KISWNLMS 486
+W +
Sbjct: 328 VRTWKTLG 335
>gi|337269049|ref|YP_004613104.1| RluA family pseudouridine synthase [Mesorhizobium opportunistum
WSM2075]
gi|336029359|gb|AEH89010.1| pseudouridine synthase, RluA family [Mesorhizobium opportunistum
WSM2075]
Length = 326
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 149/332 (44%), Gaps = 62/332 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K + +EPG + +P V+ K+ ++ +G N + D L +++ + D + V
Sbjct: 49 RVKADSRVEPGQVVRVPPLEVD----KKGESPLTGHSIRNQGDADVLAKMLIHEDPKVFV 104
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
NKP + ++G V ++D + A E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 105 FNKPAGLAVQGGSGVTRNVDDMLEA-WRNQKGEKPRLVHRLDRDTSGVLVVARTRLAAMK 163
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
L+ F K+ YWALV G P +++ I L K DG R
Sbjct: 164 LSEAFRARETKKT---------------YWALVKGVPPKREDKISTWLIKEPTPDGDRVR 208
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
I G + + A++ YR++ +W+E+ P T R HQLRVH A +G PI+GD
Sbjct: 209 IAA---HGEKGADHAVSYYRIIEQAAQTMTWLEMEPYTGRTHQLRVHAA-YIGCPIIGDP 264
Query: 395 KYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNL 454
KY E + + P G+ + LHLH R +
Sbjct: 265 KY---------------FEADTNWDF----PGGIQNR----------LHLHARRI----- 290
Query: 455 FPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ PD + A MP HM+ SWNL+
Sbjct: 291 ---VIPHPD-KGFIDVTAPMPPHMRQSWNLIG 318
>gi|427430618|ref|ZP_18920380.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
gi|425878587|gb|EKV27301.1| Ribosomal large subunit pseudouridine synthase C [Caenispirillum
salinarum AK4]
Length = 235
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 123/234 (52%), Gaps = 33/234 (14%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D + + Y+DS +LVLNKP +P+ ++++ + L + P L HRLDR+
Sbjct: 4 DAILNCLLYKDSLMLVLNKPAGLPVHAGPKGGDNLE-MFLDPLRFGLPRLPSLAHRLDRD 62
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG L++GR +++ L LF K+ YWA+V G+P ++QG++
Sbjct: 63 TSGCLILGRHSKALRKLGKLFQQGRVEKT---------------YWAVVDGAPPKEQGVL 107
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKHQ 377
HA L K+ G ++++ + G Q A+TEYRVLG +G +W+E +P T R HQ
Sbjct: 108 HAKLRKLTPKSG--WKMVVDEAEG----QPAVTEYRVLGRSDDGRRTWLECKPKTGRTHQ 161
Query: 378 LRVHCAEALGTPIVGDYKYG------WFVHRRWKQMPRVDIEPTSGKPYKLRRP 425
+RVHCA LG PIVGD YG +H R +P + P+ +P + P
Sbjct: 162 IRVHCAH-LGCPIVGDAVYGTPGVAPLHLHARGVAVP---LYPSRDEPIAVEAP 211
>gi|456354592|dbj|BAM89037.1| ribosomal large subunit pseudouridine synthase C [Agromonas
oligotrophica S58]
Length = 468
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 20/199 (10%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+D L+ + Y D +LVLNKP + ++G + +D + + + P+LVHR+DR
Sbjct: 224 LDSLKAMTLYEDDDVLVLNKPVGLAVQGGSGMTRHIDQMLEV-MRDAKGQKPRLVHRIDR 282
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + + LT F +S+S K YWALV G PK KQG
Sbjct: 283 ETSGCLLIAKTRFAATHLTGAF----RSRSARKI-----------YWALVAGVPKPKQGR 327
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K ++ + + I+ G E + A+T Y V+ + +W+ L+P+T R HQ
Sbjct: 328 ISTYLAK---EESEDDTIMRVAAHGDEGASHAVTYYAVVEASASKLAWVSLKPVTGRTHQ 384
Query: 378 LRVHCAEALGTPIVGDYKY 396
LR H A +G PIVGD KY
Sbjct: 385 LRAHMAH-IGHPIVGDPKY 402
>gi|75675586|ref|YP_318007.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
gi|74420456|gb|ABA04655.1| ribosomal large subunit pseudouridine synthase C [Nitrobacter
winogradskyi Nb-255]
Length = 412
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 135/288 (46%), Gaps = 59/288 (20%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D LR++V + D+ ++VLNKP + ++G + +D + + + P+LVHRLDRE
Sbjct: 169 DELRKMVLFEDADVMVLNKPAGLAVQGGSGLSRHIDGMLET-MRDAKGQRPRLVHRLDRE 227
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
++G LL+ +T+ + + LT F + +S K YWALV G PK KQG I
Sbjct: 228 TAGCLLIAKTRFAATALTGAF----RHRSARKI-----------YWALVAGVPKPKQGRI 272
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
L+K ++ + E I+ G E + A+T Y V+ +W+ L+P+T R HQL
Sbjct: 273 STYLAK---EENEEESIMRIAAHGDEGASHAVTYYAVVETSAQKLAWVSLKPVTGRTHQL 329
Query: 379 RVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSK 438
R H A +G I+GD KY F W+ P GL +
Sbjct: 330 RAHMAH-IGHAIIGDPKY--FNKENWQL------------------PGGLQNR------- 361
Query: 439 VPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P P G ++ A +P HM SWNL+
Sbjct: 362 ---LHLLARRI----VIP----HPRG-GVIDASAPLPPHMLQSWNLLG 397
>gi|395782689|ref|ZP_10463061.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
gi|395416567|gb|EJF82937.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
Length = 327
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 146/340 (42%), Gaps = 68/340 (20%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRI---------SKRYDTIPSGTLNPNADEIDYLRRLVK 206
+++ ++ G R+ +V G+ SK I T DE L++++
Sbjct: 38 LRSGQIRVDGGRVKADARLVMGQFVRIPPLPIDSKESLPITDKTFRGQDDET-VLKKMLL 96
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMG 266
Y D + V NKP + ++G + MD++ + E P+LVHRLDRE+SG+L++
Sbjct: 97 YEDPKVFVFNKPAGLAVQGGSGLMRHMDSMLEVWRNKK-GEKPRLVHRLDRETSGVLVVA 155
Query: 267 RTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
R++ LT F K+ YWALV G PK+KQ I + K +
Sbjct: 156 RSRGVAQALTAAFRARETKKT---------------YWALVRGVPKKKQDKISTWMVKEI 200
Query: 327 LDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEAL 386
G + G S A++ YR+L SW+E+ P T R HQLRVH A +
Sbjct: 201 TTQGDKMHVC---EHGEPDSHHAVSYYRILDTRGRTLSWLEMEPYTGRTHQLRVHAAH-M 256
Query: 387 GTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHC 446
PI+GD KY +F W P G+ + LHLH
Sbjct: 257 DHPIIGDTKY-FFSDSNWTL------------------PGGIQNR----------LHLHA 287
Query: 447 RELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
R ++ + P G +L VA +P HM S+NL+S
Sbjct: 288 RRIRIPH--------PSG-GILDIVAPLPPHMVQSFNLLS 318
>gi|294675889|ref|YP_003576504.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
capsulatus SB 1003]
gi|294474709|gb|ADE84097.1| ribosomal large subunit pseudouridine synthase C [Rhodobacter
capsulatus SB 1003]
Length = 355
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 174/398 (43%), Gaps = 75/398 (18%)
Query: 106 VTAVSWVKYYFDEVQ---DSVIQSHF---NKGLVQMECANMGDSFVEQGQMKPIRKIKTN 159
+++V +K DE + D ++ F +G V+ C G V+ G ++K +
Sbjct: 1 MSSVQLIKVTEDEGESRLDRWLKKKFPVLTQGAVEKMC-RTGQLRVDGG------RVKAS 53
Query: 160 EVMEPGARIFLP------VSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+ + PG + +P E R R D ++P ADE ++ V ++D I+
Sbjct: 54 DRIGPGMEVRVPPLPEAGAKAPESRSEARRDAT---QISP-ADE-KMIQAAVLWKDEHII 108
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
LNKP +P +G + AL + Y + PK+VHRLD+++SG+LL+ RT
Sbjct: 109 ALNKPAGLPSQGGSGQGDRHVDGLLEALKFGYKDRPKMVHRLDKDTSGVLLIARTDRVAR 168
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV--LLDDGK 331
L+ F + + YWA V G P K+G I L K G+
Sbjct: 169 ALSESFR---------------LKTTRKIYWAAVAGVPSPKKGTIRYGLVKAPGHGRGGE 213
Query: 332 TERIILAQNSGLEAS---QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGT 388
E+++ S ++A+ + A T++ V+ + + SW+ L P+T R HQLR H AE LG
Sbjct: 214 GEKMLCIHPSKVDATPDAKRATTDFAVIDGLGSRVSWVGLVPITGRTHQLRAHMAE-LGH 272
Query: 389 PIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRE 448
PIVGD KYG SG+ DG Q G +S+ LHLH R
Sbjct: 273 PIVGDGKYG-----------------GSGQE---NLGDGWGSQLGGEISRK--LHLHART 310
Query: 449 LKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ D+ P + A +P HM +W +
Sbjct: 311 ISFDH--------PITKKRITLTAPLPDHMVRTWKTLG 340
>gi|16126223|ref|NP_420787.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus CB15]
gi|221234996|ref|YP_002517432.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
gi|13423445|gb|AAK23955.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus CB15]
gi|220964168|gb|ACL95524.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
Length = 331
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 113/214 (52%), Gaps = 27/214 (12%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
PS +A ++ Y + LV Y D +L LNKP + ++G +D L +A +
Sbjct: 75 PSDKNKLSARDVAYAKSLVLYEDEEVLALNKPAGLAVQGGTKTTKHIDKLLSA-----WG 129
Query: 247 EG---PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
EG P+LVHRLDR++SG+LL+G+T + + L+ F+ K+ Y
Sbjct: 130 EGVDRPRLVHRLDRDTSGVLLLGKTPSAAARLSGAFAKRKAQKT---------------Y 174
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
WA+V G+P +G++ L+K + G E ++ AQ +A Q A TE+ +
Sbjct: 175 WAIVAGNPHPTEGVMELHLAKRGV--GDRELVVPAQPKDPDA-QPAETEFVTISRAGPRV 231
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+W+ LRP T R HQLR H +A+G PI+GD KYG
Sbjct: 232 TWMALRPHTGRTHQLRAHM-KAMGHPILGDPKYG 264
>gi|395793298|ref|ZP_10472703.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395431612|gb|EJF97630.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 327
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 58/291 (19%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+ L++++ Y D+ + V NKP + ++G + +DA+ + E P+LVHRL
Sbjct: 86 DDGTVLKKMLLYEDAKVFVFNKPAGLAVQGGSGLTRHVDAMLEVWRNKK-GEKPRLVHRL 144
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DRE+SG+L++ R++ + LT F K+ YWALV G PK+ Q
Sbjct: 145 DRETSGVLIVARSRGAAQALTAAFRTRETKKT---------------YWALVRGVPKKNQ 189
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I + K G+ R+ G + A++ YRVL SW+E+ P T R
Sbjct: 190 DKISTWMVKETTAQGEKMRVC---EHGEPDASHAVSYYRVLETRGRTLSWLEMEPYTGRT 246
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A + PI+GD KY +F WK P G+ +
Sbjct: 247 HQLRVHAAH-IDHPIIGDSKY-FFSDSNWKL------------------PGGIQNR---- 282
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ + P G +L VA +P HM S+NL++
Sbjct: 283 ------LHLHARRIRIPH--------PSG-GVLDIVAPLPPHMVQSFNLLA 318
>gi|395790919|ref|ZP_10470378.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
gi|395409215|gb|EJF75814.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
Length = 327
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 58/291 (19%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+ L++++ Y D + V NKP + ++G + +D++ + E P+LVHRL
Sbjct: 86 DDGTILKKMLLYEDPKVFVFNKPAGLAVQGGSGLTRHVDSMLEVWRNKK-GEKPRLVHRL 144
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DRE+SG+L++ R++ + LT F ++K + YWALV G PK+KQ
Sbjct: 145 DRETSGVLIVARSRGAAQALTAAFR-ARETKKI--------------YWALVRGVPKKKQ 189
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I + K ++ G R+ G S A++ YRVL SW+E+ P T R
Sbjct: 190 DKISTWMVKEMVPQGDKMRVC---EHGEPDSYHAISYYRVLDTRGRTLSWLEMEPYTGRT 246
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A + PI+GD KY +F WK P G+ +
Sbjct: 247 HQLRVHAAH-VDHPIIGDSKY-FFSDNNWKL------------------PGGIQNR---- 282
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ + P G LL VA +P HM S+NL++
Sbjct: 283 ------LHLHARRIRIPH--------PSG-GLLDIVAPLPPHMIQSFNLLA 318
>gi|295688947|ref|YP_003592640.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
gi|295430850|gb|ADG10022.1| pseudouridine synthase, RluA family [Caulobacter segnis ATCC 21756]
Length = 332
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 111/207 (53%), Gaps = 27/207 (13%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG---PK 250
+A ++ Y + LV Y D +L LNKP + ++G +D L +A + EG P+
Sbjct: 83 SARDVAYAKSLVLYEDEEVLALNKPAGLAVQGGTKTTKHIDKLLSA-----WGEGVDRPR 137
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG+LL+G+T + + L+ F+ K+ YWA+V G+
Sbjct: 138 LVHRLDRDTSGVLLLGKTPSAAARLSGAFAKRKAQKT---------------YWAIVAGN 182
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
P +G++ L+K + D E ++ AQ +A Q A TE+ + +W+ LRP
Sbjct: 183 PHPTEGVMELHLAKRGVGD--RELVVPAQPKDADA-QPAETEFVTISRAGPRVTWMALRP 239
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
T R HQLR H +A+G PI+GD KYG
Sbjct: 240 HTGRTHQLRAHM-KAMGHPILGDPKYG 265
>gi|319405867|emb|CBI79499.1| ribosomal large subunit pseudouridine synthase C [Bartonella sp. AR
15-3]
Length = 327
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 165/378 (43%), Gaps = 82/378 (21%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K Y+ +V +Q G ++++ R++K + + G I +
Sbjct: 21 WFKVYYPDVGFGYLQKLLRSGQIRVDG----------------RRVKNDVRLVVGQSIRV 64
Query: 171 PVSMVEGRISKRYDTIP--SGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLP 228
P +++ + D+ P + + DE+ L+ ++ Y DS I V NKP + ++G
Sbjct: 65 PPFLID-----KEDSAPVFNKIIFGQEDEV-ILKDMLLYEDSKIFVFNKPAGLAVQGGSG 118
Query: 229 VHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSL 288
+ +D++ + E P+LVHR+DRE+SG+L++ R++ + LT F K+
Sbjct: 119 LTRHVDSMLEVWRNKK-GEKPRLVHRIDRETSGVLVVARSRGAAQALTAAFRTRETKKT- 176
Query: 289 SKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQE 348
YWALV G P++KQ I + + + + G R+ + + S
Sbjct: 177 --------------YWALVRGVPRKKQDKISTWMVREITEQGDKVRVCERRQAD---SNH 219
Query: 349 AMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMP 408
A++ YRVL SW+E+ P T R HQLRVH A + PI+GD KY +F W
Sbjct: 220 AVSYYRVLDTRGKALSWLEMEPYTGRTHQLRVHAA-YMKHPIIGDSKY-FFPDSNWAL-- 275
Query: 409 RVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
P G+ + LHLH R ++ + P G +L
Sbjct: 276 ----------------PGGMQNR----------LHLHARRIRIPH--------PSG-GIL 300
Query: 469 RFVASMPSHMKISWNLMS 486
A +P HM S+NL +
Sbjct: 301 DITAPLPPHMLQSFNLFA 318
>gi|398826077|ref|ZP_10584344.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
gi|398222009|gb|EJN08400.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
Length = 404
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 134/285 (47%), Gaps = 59/285 (20%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L+ + Y D +LVLNKP + ++G +D + + + P+LVHR+D+++S
Sbjct: 163 LKEMTIYEDDDVLVLNKPFGLAVQGGSGTTRHIDQMLEV-MRDSKGQKPRLVHRIDKDTS 221
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ +T+ + S LT F +S+S K YWALV G PK KQG I
Sbjct: 222 GCLLIAKTRFAASHLTGAF----RSRSARKT-----------YWALVPGLPKPKQGRIST 266
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+K +D RI AQ+ G E + A+T Y V+ N +W+ L+P+T R HQLR
Sbjct: 267 FLAKEESEDDTIMRI--AQH-GDEGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQLRA 323
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
H E +G PIVGD KY F W+ P GL +
Sbjct: 324 HM-EHIGHPIVGDPKY--FNIENWQL------------------PGGLQNR--------- 353
Query: 441 LLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
LHL R + + P P G + A +P HM+ SWNL+
Sbjct: 354 -LHLLARRI----VIP----HPRG-GFIDATAPLPQHMQQSWNLL 388
>gi|423713068|ref|ZP_17687328.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395424694|gb|EJF90874.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 327
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 58/291 (19%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+ L++++ Y D+ + V NKP + ++G + +DA+ + E P+LVHRL
Sbjct: 86 DDGTVLKKMLLYEDAKVFVFNKPAGLAVQGGSGLTRHVDAMLEVWRNKK-GEKPRLVHRL 144
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DRE+SG+L++ R++ + LT F K+ YWALV G PK+ Q
Sbjct: 145 DRETSGVLIVARSRGAAQALTAAFRTRETKKT---------------YWALVRGVPKKNQ 189
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I + K G+ R+ G + A++ YRVL SW+E+ P T R
Sbjct: 190 DKISTWIVKETTAQGEKMRVC---EHGEPDASHAVSYYRVLETRGRTLSWLEMEPYTGRT 246
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A + PI+GD KY +F WK P G+ +
Sbjct: 247 HQLRVHAAH-IDHPIIGDSKY-FFSDSNWKL------------------PGGIQNR---- 282
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ + P G +L VA +P HM S+NL++
Sbjct: 283 ------LHLHARRIRIPH--------PSG-GVLDIVAPLPPHMVQSFNLLA 318
>gi|429769324|ref|ZP_19301437.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
gi|429187338|gb|EKY28254.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
Length = 331
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 106/204 (51%), Gaps = 27/204 (13%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG---PKLVH 253
+I Y + LV Y D ++ LNKP + ++G +D L +A + EG P+LVH
Sbjct: 86 DIAYAKSLVLYEDHMVIALNKPHGLAVQGGTKTTKHVDRLLSA-----WGEGMQRPRLVH 140
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG+LL+G+ E+ L F+ K+ YWA+VIG+PK
Sbjct: 141 RLDRDTSGVLLLGKGPEAAKRLAGAFARRQAKKT---------------YWAIVIGNPKP 185
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
G I L K ++D + R A++ E ++ T + + + +W+ LRP T
Sbjct: 186 SAGQIDMALKKTGINDFEMMRPAEAKDPKGEPAE---TAFATISRAAHRAAWMALRPFTG 242
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQLR H A A+G PI+GD KYG
Sbjct: 243 RTHQLRAHMA-AIGHPILGDPKYG 265
>gi|27380477|ref|NP_772006.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobium
japonicum USDA 110]
gi|27353641|dbj|BAC50631.1| bll5366 [Bradyrhizobium japonicum USDA 110]
Length = 405
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 135/289 (46%), Gaps = 59/289 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+ L+ + Y D +LVLNKP + ++G +D + + + P+LVHR+D+
Sbjct: 161 LKALKEMTIYEDDDVLVLNKPFGLAVQGGSGTTRHIDQMLEV-MRDSKGQKPRLVHRIDK 219
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG LL+ +T+ + S LT F +S+S K YWALV G PK KQG
Sbjct: 220 DTSGCLLIAKTRFAASHLTGAF----RSRSARKV-----------YWALVPGLPKPKQGR 264
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K +D RI AQ+ G E + A+T Y V+ N +W+ L+P+T R HQ
Sbjct: 265 ISTFLAKEESEDDTIMRI--AQH-GDEGASHAVTYYAVVETAGNKLTWVSLKPVTGRTHQ 321
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H E +G PIVGD KY F W+ P GL +
Sbjct: 322 LRAHM-EHIGHPIVGDPKY--FNIENWQL------------------PGGLQNR------ 354
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P G ++ A +P HM+ SWNL+
Sbjct: 355 ----LHLLARRI--------VIPHPRG-GVIDATAPLPPHMQQSWNLLG 390
>gi|49474373|ref|YP_032415.1| ribosomal large subunit pseudouridine synthase c [Bartonella
quintana str. Toulouse]
gi|49239877|emb|CAF26275.1| Ribosomal large subunit pseudouridine synthase c [Bartonella
quintana str. Toulouse]
Length = 327
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 138/291 (47%), Gaps = 58/291 (19%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+ L++++ Y DS I V NKP + ++G + D++ + E P+LVHRL
Sbjct: 86 DDRVILKKMLLYEDSKIFVFNKPAGLAVQGGSGLTRHFDSMLEVWRNKK-GEKPRLVHRL 144
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DRE+SG+L++ R++ + LT F K+ YWALV G PK+KQ
Sbjct: 145 DRETSGVLIVARSRGAAQTLTAAFRARETKKT---------------YWALVRGVPKKKQ 189
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I + K + G +++ + ++ G S A++ YRVL SW+E+ P T R
Sbjct: 190 DKISTWVVKDITAQG--DKMCVCEH-GEPDSNHAVSYYRVLDTRGRALSWLEMEPYTGRT 246
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A + PI+GD KY +F WK +PR G+ +
Sbjct: 247 HQLRVHAA-YMDNPIIGDSKY-FFSDSNWK-LPR-----------------GIQNR---- 282
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ + P G +L A +P HM S+NL++
Sbjct: 283 ------LHLHARRIRIPH--------PSG-GILDITAPLPPHMVQSFNLLA 318
>gi|83312510|ref|YP_422774.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
magneticum AMB-1]
gi|82947351|dbj|BAE52215.1| Hypothetical pseudouridine synthase in lpd 3'region
[Magnetospirillum magneticum AMB-1]
Length = 225
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 112/201 (55%), Gaps = 28/201 (13%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+D L RL+ YRD A+L+++KP + + P L ALS+ P+L HRLDR
Sbjct: 1 MDLLARLL-YRDPAVLIIDKPAGLAVHAG-PKGGEHLMLYLDALSFGLKRRPELAHRLDR 58
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG L++GRT ++++ L LF+ K+ YWA+V+G P+E QG+
Sbjct: 59 ETSGCLVLGRTSKALAGLGELFAKGLADKT---------------YWAVVVGKPREDQGV 103
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKH 376
I L K + K + +GL ++T++R+LG +G SW+E RPLT R H
Sbjct: 104 IDYALKK---REKKFGWRMEVDRTGL----ASVTQWRLLGS--DGRLSWLECRPLTGRTH 154
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q+R HCA A+G P+VGD YG
Sbjct: 155 QIRAHCA-AIGHPLVGDSIYG 174
>gi|407800531|ref|ZP_11147391.1| hypothetical protein OCGS_2464 [Oceaniovalibus guishaninsula
JLT2003]
gi|407057450|gb|EKE43426.1| hypothetical protein OCGS_2464 [Oceaniovalibus guishaninsula
JLT2003]
Length = 350
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 126/283 (44%), Gaps = 52/283 (18%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
V YRD ++ LNKPP + +G +D LA A L + + P+LVHRLDR++SG+LL
Sbjct: 94 VIYRDDHLIALNKPPGLASQGGSKQTRHVDNLAEA-LRFGLEDKPRLVHRLDRDTSGILL 152
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ RT+ + LT A + YWA + G P + G + L K
Sbjct: 153 LARTRIAAKGLTETLRH---------------RATRKIYWAALAGVPSPRMGSVKYGLVK 197
Query: 325 V--LLDDGKTERIILAQNSGLEAS---QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
G+ E+++ + A+ + A T+Y VL + SW+ L P+T R HQLR
Sbjct: 198 APGRGAGGEGEKMLCIHPDAVTATDGAKRAHTDYAVLSALGGRMSWVALVPVTGRTHQLR 257
Query: 380 VHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKV 439
H AE LG P++GD KYG SG+ DG Q G LS+
Sbjct: 258 AHMAE-LGHPVIGDGKYG-----------------GSGQENA---GDGWGAQLGGELSRK 296
Query: 440 PLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISW 482
LHLH R L G DL A +P HM +W
Sbjct: 297 --LHLHARSL-------AFRHPVTGADLT-LTAPLPDHMARTW 329
>gi|110634000|ref|YP_674208.1| ribosomal large subunit pseudouridine synthase C [Chelativorans sp.
BNC1]
gi|110284984|gb|ABG63043.1| ribosomal large subunit pseudouridine synthase C [Chelativorans sp.
BNC1]
Length = 327
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 58/290 (20%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
+ + L +++ + D + V NKP + ++G V+ +D + A E P+LVHRLD
Sbjct: 86 DAEVLSQMLIHEDEKVFVFNKPAGLAVQGGSGVNRHVDGMLEA-WRNKRGEKPRLVHRLD 144
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG+L++ RT+ + LT F ++K + YWAL+ G PK+ +G
Sbjct: 145 RDTSGVLVVARTRLAAVKLTESFR-ARETKKI--------------YWALIKGVPKKAEG 189
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I L + DG RI G + A++ YR++ SW+ + P T R H
Sbjct: 190 RISTWLVRETTPDGDRMRI---AKHGEPGADHAVSTYRLVEQAGTALSWLVMEPFTGRMH 246
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVL 436
QLRVH A +G PI+GD KY + + W ++P G +
Sbjct: 247 QLRVHAAH-IGCPIIGDPKY-FEADQNW-ELP------------------------GGIQ 279
Query: 437 SKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
++ LHLH R + + P PDG + A MP HM+ SWNL+
Sbjct: 280 NR---LHLHARRI----IIP----HPDGGS-IDVTAEMPPHMQQSWNLLG 317
>gi|254419979|ref|ZP_05033703.1| pseudouridine synthase, RluA family [Brevundimonas sp. BAL3]
gi|196186156|gb|EDX81132.1| pseudouridine synthase, RluA family [Brevundimonas sp. BAL3]
Length = 341
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 121/251 (48%), Gaps = 35/251 (13%)
Query: 157 KTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNAD-------EIDYLRRLVKYRD 209
++ ++ GARI P + + R IP T D +I + + LV Y D
Sbjct: 50 RSGQIRVDGARI-KPEGRLTAGAAVRVPPIPDDTSRQAGDLHTLSERDIAFAKSLVLYED 108
Query: 210 SAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG---PKLVHRLDRESSGLLLMG 266
++ +NKP + ++G +D L +A + EG P+LVHRLDR++SG+LL+G
Sbjct: 109 DMVIAINKPHGLAVQGGTKTSRHVDRLLSA-----WGEGMDRPRLVHRLDRDTSGVLLLG 163
Query: 267 RTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
+ E+ L F+ K+ YWA+VIG+PK G I PL K
Sbjct: 164 KGPEAAKRLAGAFARRQAKKT---------------YWAIVIGNPKPYSGQIDMPLKKTG 208
Query: 327 LDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEAL 386
++D + R ++ E ++ T + + + +W+ LRP T R HQLR H A +
Sbjct: 209 INDFEMMRPADRKDPKAEPAE---TAFSTISRASHRAAWMALRPFTGRTHQLRAHMA-GI 264
Query: 387 GTPIVGDYKYG 397
G PI+GD KYG
Sbjct: 265 GHPILGDPKYG 275
>gi|392382035|ref|YP_005031232.1| 23S rRNA pseudouridylate synthase [Azospirillum brasilense Sp245]
gi|356877000|emb|CCC97801.1| 23S rRNA pseudouridylate synthase [Azospirillum brasilense Sp245]
Length = 339
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 133/293 (45%), Gaps = 66/293 (22%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
+I L+ LV ++D ++ LNKP + ++G +DA+ A L +D E PKLVHRLD
Sbjct: 96 DIAALQALVLFKDGDVIALNKPAGLAVQGGTNTTKHLDAMLDA-LRFDAKERPKLVHRLD 154
Query: 257 RESSGLLLMGRTKESVSLLTWLF--SDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
+++SG+LL+ R + S LT F DV K YWA +G PK
Sbjct: 155 KDTSGVLLLARNTFAASKLTEQFRGRDVRKI-----------------YWAATVGVPKPY 197
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
QG I L+K G ER+ ++ G + A+T Y VL + +++ + P T R
Sbjct: 198 QGKIDLALAKEGGPQG--ERVAGDEDDG----KRAVTYYTVLENLGKQAAFVAMWPRTGR 251
Query: 375 KHQLRVHCAEALGTPIVGDYKY-GWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
HQLRVH A+GTPI+GD KY G H +P G ++QK
Sbjct: 252 THQLRVHM-NAIGTPILGDGKYAGQGAH-----LP------------------GAEIQKK 287
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R L L G ++ A +P HM +W +
Sbjct: 288 --------LHLHARRL-------ILPHPRGGNRMIDVTAPLPDHMLTTWKYLG 325
>gi|188582089|ref|YP_001925534.1| pseudouridine synthase [Methylobacterium populi BJ001]
gi|179345587|gb|ACB80999.1| pseudouridine synthase [Methylobacterium populi BJ001]
Length = 249
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 107/201 (53%), Gaps = 40/201 (19%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ YRD+ +LV++KP +P+ KG + + +DAL + P+ HRLDR++S
Sbjct: 20 ILYRDALMLVIDKPAGLPVHPGPKGGPTLTDHLDAL-----RFGLPRRPEAAHRLDRDTS 74
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR +++ L LF+D K+ YWALV G P E +G I
Sbjct: 75 GCLVLGRHARALARLNRLFADGKADKT---------------YWALVEGGPDEAEGRIDL 119
Query: 321 PLSKVLLDDG----KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
PL+K D KT+ A ++T YRVLG +G SW+EL+P+T R H
Sbjct: 120 PLAKRSDDPRSWWMKTD----------PAGAPSLTLYRVLG-RADGLSWLELKPVTGRTH 168
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVHCA A+G PI GD YG
Sbjct: 169 QLRVHCA-AMGWPIRGDAIYG 188
>gi|393768106|ref|ZP_10356648.1| RluA family pseudouridine synthase [Methylobacterium sp. GXF4]
gi|392726499|gb|EIZ83822.1| RluA family pseudouridine synthase [Methylobacterium sp. GXF4]
Length = 469
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 133/255 (52%), Gaps = 26/255 (10%)
Query: 143 SFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYL 201
S V +G+++ ++ K N+ +EPG + +P ++ + P D+ +++
Sbjct: 173 SIVRKGELRVDGKRAKPNDRLEPGMSVRVPPLRLDQPTER-----PRSAAR-EQDDAEFI 226
Query: 202 RRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
R L+ Y D+ +++LNKP + ++G +D L AA D + P+LVHRLD++++G
Sbjct: 227 RSLILYEDADMMILNKPFGLAVQGGSGTVRHVDGLLAALTGPD-GQKPRLVHRLDKDTAG 285
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
L++ +T+ + + L F +S++ K YWAL G P+ +QG +
Sbjct: 286 CLIIAKTRLAAATLAKSF----RSRAARKI-----------YWALTAGVPRVRQGRVSTY 330
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L+K D R+ +A++ G E + A+T Y ++ SW+ +P+T R HQLR H
Sbjct: 331 LAKDEPTDADA-RMRVAKH-GDEGASHALTYYAMVDQAAQKLSWLSFKPVTGRTHQLRAH 388
Query: 382 CAEALGTPIVGDYKY 396
A +G PIVGD KY
Sbjct: 389 AAH-IGHPIVGDPKY 402
>gi|23012044|ref|ZP_00052228.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 238
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 117/218 (53%), Gaps = 38/218 (17%)
Query: 184 DTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAA 239
DT P T++P EI + YRD+ +LV++KP +P+ KG + + +D+L
Sbjct: 5 DTAPKRTVDP---EIGLS---LLYRDALMLVIDKPAGLPVHPGPKGGPTLTDHLDSL--- 55
Query: 240 ALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAM 299
+ P+ HRLDR++SG L++GR ++++ L LF+D KS
Sbjct: 56 --RFGLPRRPEAAHRLDRDTSGCLVLGRHAKALARLNRLFADSKVDKS------------ 101
Query: 300 YQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
YWALV G P E +G I PL++ DD ++ + A ++T YRVLG
Sbjct: 102 ---YWALVEGGPSETEGRIDLPLARRS-DDPRSWWMKTD-----PAGAPSLTLYRVLG-R 151
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
G SW+EL+P+T R HQLRVHCA A+G PI GD YG
Sbjct: 152 TEGLSWLELKPVTGRTHQLRVHCA-AMGWPIRGDAIYG 188
>gi|163849730|ref|YP_001637773.1| RluA family pseudouridine synthase [Methylobacterium extorquens
PA1]
gi|163661335|gb|ABY28702.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
PA1]
Length = 468
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 133/258 (51%), Gaps = 32/258 (12%)
Query: 143 SFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYL 201
S V +G+++ ++ K N+ +EPG+ + +P ++ + P + D ++L
Sbjct: 172 SIVRKGELRVDGKRAKPNDRLEPGSSVRVPPLKLDQPTER-----PRSAAKIDGD-AEFL 225
Query: 202 RRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
R L+ Y D+ +++LNKP + ++G +D L A D + P+LVHRLD++++G
Sbjct: 226 RSLILYEDADMMILNKPFGLAVQGGSGTVRHVDGLLEALTGPD-GQRPRLVHRLDKDTAG 284
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
L++ +T+ + S L F A + YWALV G P+ +QG +
Sbjct: 285 CLIVAKTRLAASTLAKSFR---------------SRAARKIYWALVAGVPRTRQGRV--- 326
Query: 322 LSKVLLDDGKTE---RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
S L+ D T+ R+ +A++ G + + A+T Y + +W+ L+P+T R HQL
Sbjct: 327 -STYLVKDEPTDADARMRVAKH-GDDGASHALTYYATVDQAAQKLAWLSLKPVTGRTHQL 384
Query: 379 RVHCAEALGTPIVGDYKY 396
R H A +G PIVGD KY
Sbjct: 385 RAHAAH-IGHPIVGDPKY 401
>gi|83858519|ref|ZP_00952041.1| ribosomal large subunit pseudouridine synthase C [Oceanicaulis sp.
HTCC2633]
gi|83853342|gb|EAP91194.1| ribosomal large subunit pseudouridine synthase C [Oceanicaulis sp.
HTCC2633]
Length = 325
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 155/378 (41%), Gaps = 90/378 (23%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K +F V +I+ G ++++ + K N+ + G + +
Sbjct: 21 WFKKHFPHVSHGMIEKLLRTGQIRVDGG----------------RAKGNQRLSAGQSVRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P G P + + + R LV Y D ++ LNKPP + ++G V
Sbjct: 65 PPMPDAGE--------PREQGSITRQDAQFARSLVIYEDKQMIALNKPPGLAVQGGSKVT 116
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFS--DVNKSKSL 288
+D L A D + P+LVHRLD+++SG+L++ +T +S L LF DV K+
Sbjct: 117 MHLDHLLQAFGKGD--QKPRLVHRLDKDTSGVLVVAKTAQSAKRLARLFQTRDVKKT--- 171
Query: 289 SKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQE 348
YWA+ +G P + G I + K + D +++ G E +Q
Sbjct: 172 --------------YWAICLGLPAPRAGEIKGFMKKSMEGD---RELMVGARHGEEGAQH 214
Query: 349 AMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMP 408
A+T Y V SW+ LRP T R HQLRVH +A+G I GD KY
Sbjct: 215 ALTRYAVADNAGARASWVVLRPETGRTHQLRVHM-QAMGHSIYGDGKY------------ 261
Query: 409 RVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
T P P+GL + LHLH R+++ P KP L
Sbjct: 262 ------TCDYP----DPEGLSRK----------LHLHARKIE----IPREGQKP-----L 292
Query: 469 RFVASMPSHMKISWNLMS 486
A +P HM S++ +
Sbjct: 293 VIEADLPKHMADSFDALG 310
>gi|240136939|ref|YP_002961408.1| Pseudouridine synthase, RluD [Methylobacterium extorquens AM1]
gi|418058116|ref|ZP_12696096.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
DSM 13060]
gi|240006905|gb|ACS38131.1| Pseudouridine synthase, RluD [Methylobacterium extorquens AM1]
gi|373568325|gb|EHP94274.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
DSM 13060]
Length = 463
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 133/258 (51%), Gaps = 32/258 (12%)
Query: 143 SFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYL 201
S V +G+++ ++ K N+ +EPG+ + +P ++ + P + D ++L
Sbjct: 167 SIVRKGELRVDGKRAKPNDRLEPGSSVRVPPLKLDQPTER-----PRSAAKIDGD-AEFL 220
Query: 202 RRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
R L+ Y D+ +++LNKP + ++G +D L A D + P+LVHRLD++++G
Sbjct: 221 RSLILYEDADMMILNKPFGLAVQGGSGTVRHVDGLLEALTGPD-GQRPRLVHRLDKDTAG 279
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
L++ +T+ + S L F A + YWALV G P+ +QG +
Sbjct: 280 CLIVAKTRLAASTLAKSFR---------------SRAARKIYWALVAGVPRTRQGRV--- 321
Query: 322 LSKVLLDDGKTE---RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
S L+ D T+ R+ +A++ G + + A+T Y + +W+ L+P+T R HQL
Sbjct: 322 -STYLVKDEPTDADARMRVAKH-GDDGASHALTYYATVDQAAQKLAWLSLKPVTGRTHQL 379
Query: 379 RVHCAEALGTPIVGDYKY 396
R H A +G PIVGD KY
Sbjct: 380 RAHAAH-IGHPIVGDPKY 396
>gi|218528371|ref|YP_002419187.1| pseudouridine synthase [Methylobacterium extorquens CM4]
gi|218520674|gb|ACK81259.1| pseudouridine synthase, RluA family [Methylobacterium extorquens
CM4]
Length = 468
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 133/258 (51%), Gaps = 32/258 (12%)
Query: 143 SFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYL 201
S V +G+++ ++ K N+ +EPG+ + +P ++ + P + D ++L
Sbjct: 172 SIVRKGELRVDGKRAKPNDRLEPGSSVRVPPLKLDQPTER-----PRSAAKIDGD-AEFL 225
Query: 202 RRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
R L+ Y D+ +++LNKP + ++G +D L A D + P+LVHRLD++++G
Sbjct: 226 RSLILYEDADMMILNKPFGLAVQGGSGTVRHVDGLLEALTGPD-GQRPRLVHRLDKDTAG 284
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
L++ +T+ + S L F A + YWALV G P+ +QG +
Sbjct: 285 CLIVAKTRLAASTLAKSFR---------------SRAARKIYWALVAGVPRTRQGRV--- 326
Query: 322 LSKVLLDDGKTE---RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
S L+ D T+ R+ +A++ G + + A+T Y + +W+ L+P+T R HQL
Sbjct: 327 -STYLVKDEPTDADARMRVAKH-GDDGASHALTYYATVDQAAQKLAWLSLKPVTGRTHQL 384
Query: 379 RVHCAEALGTPIVGDYKY 396
R H A +G PIVGD KY
Sbjct: 385 RAHAAH-IGHPIVGDPKY 401
>gi|299135225|ref|ZP_07028416.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2]
gi|298590202|gb|EFI50406.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2]
Length = 413
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 141/300 (47%), Gaps = 60/300 (20%)
Query: 188 SGTLNPNADE-IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
G L+ A + ++ LR+++ + D+ ++VLNKP + ++G + +D + +
Sbjct: 158 GGNLSEAATKTLEELRKMILFEDADVMVLNKPAGLAVQGGSGLSRHVDQMLEV-MRDAKG 216
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
+ P+LVHRLDRE+SG LL+ +T+ + S+LT F + +S K YWAL
Sbjct: 217 QRPRLVHRLDRETSGCLLIAKTRFAASVLTGSF----RHRSARKI-----------YWAL 261
Query: 307 VIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
V G PK KQG I L+K ++ + + I+ G E + A+T Y V+ +W+
Sbjct: 262 VAGVPKPKQGRISTYLAK---EENEEDSIMRIAEHGDEGAAHAVTYYAVVEASAQKLAWV 318
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPD 426
L+P+T R HQLR H A + IVGD KY F W+ P
Sbjct: 319 SLKPVTGRTHQLRAHMAH-IDHAIVGDPKY--FNKENWQL------------------PG 357
Query: 427 GLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
GL + LHL R + + P P G ++ A +P HM SWNL+
Sbjct: 358 GLQKR----------LHLLARRI----VIP----HPRG-GVIDVTAPLPPHMLQSWNLLG 398
>gi|296444792|ref|ZP_06886755.1| pseudouridine synthase, RluA family [Methylosinus trichosporium
OB3b]
gi|296257740|gb|EFH04804.1| pseudouridine synthase, RluA family [Methylosinus trichosporium
OB3b]
Length = 365
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 145/311 (46%), Gaps = 64/311 (20%)
Query: 191 LNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
L + ++ L + Y D+++LVLNKP + ++G + +D + + D P
Sbjct: 89 LRASPEDARALADMTLYEDASLLVLNKPYGLAVQGGSGMTRHIDGMLESLAKGDTR--PV 146
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG+LL+ + + + + L +F +S+ K YWALV G
Sbjct: 147 LVHRLDRDTSGVLLIAKNRRTAADLGEIF----RSRQAKKI-----------YWALVEGV 191
Query: 311 PKEKQGIIHAPLSK--VLLDD-------------GKTERIILAQNSGLEASQEAMTEYRV 355
PK QG + L+K + DD E++ +A++ G E +Q ++T Y +
Sbjct: 192 PKPAQGRVSLYLAKGAAMGDDRPPRPGSERREAADAREKMRVARH-GDEGAQHSLTYYAI 250
Query: 356 LGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPT 415
+ C+W+ ++PLT R HQLR H AEA+ PI GD KYG HR ++ R D P
Sbjct: 251 VEKAAPRCAWLSMKPLTGRTHQLRAH-AEAIACPIFGDPKYG---HRPEDEVRRRD--PM 304
Query: 416 SGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
P L R LHL R L + P P G L A +P
Sbjct: 305 RAMPEGLERK----------------LHLLARRL----ILPN----PKG-GTLDVTAPLP 339
Query: 476 SHMKISWNLMS 486
+HM+ SW++
Sbjct: 340 AHMQTSWDVFG 350
>gi|402772320|ref|YP_006591857.1| pseudouridine synthase [Methylocystis sp. SC2]
gi|401774340|emb|CCJ07206.1| Pseudouridine synthase [Methylocystis sp. SC2]
Length = 356
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 158/341 (46%), Gaps = 66/341 (19%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY--LRRLVKYRDSA 211
++++T+ +E G ++ +P +E P+ AD D L + + D
Sbjct: 59 KRVETSTRLEEGQKVRVPPLKIEA---------PAAPAVKRADPKDAQALADMTLFEDKD 109
Query: 212 ILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKES 271
+LVLNKP + +G +D + + D P LVHRLDR++SG+LL+ + +
Sbjct: 110 VLVLNKPYGLATQGGSGQTRHVDGMLESLAKGDTR--PVLVHRLDRDTSGVLLVAKNRRM 167
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH------APLSKV 325
+ L +F +S+ K YWALV G PK QG I A + K
Sbjct: 168 AAELGEIF----RSRQAKKI-----------YWALVEGVPKPAQGRISLYLAKGAGMEKS 212
Query: 326 LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEA 385
+ E++ +A++ +A Q ++T Y ++ + C+W+ ++PLT R HQLR H AEA
Sbjct: 213 RGGARELEKMRVAKHGEADA-QHSLTYYAIVDKVAPRCAWLSMKPLTGRTHQLRAH-AEA 270
Query: 386 LGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLH 445
+G PI GD KYG HR ++ R D P + P+GLD + LHL
Sbjct: 271 IGHPIFGDPKYG---HRPEDEVRRRD-------PLRA-MPEGLDRK----------LHLL 309
Query: 446 CRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
R L + P P G ++ A +P HMK SW L
Sbjct: 310 ARRL----VLP----HPKG-GVIDVTAPLPDHMKKSWELFG 341
>gi|319899068|ref|YP_004159161.1| ribosomal large subunit pseudouridine synthase C [Bartonella
clarridgeiae 73]
gi|319403032|emb|CBI76587.1| ribosomal large subunit pseudouridine synthase C [Bartonella
clarridgeiae 73]
Length = 327
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 154/340 (45%), Gaps = 68/340 (20%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGR-------ISKRYDTIP--SGTLNPNADEIDYLRRLVK 206
+++ ++ G R+ + +V G+ + + D P + T+ D I L+ ++
Sbjct: 38 LRSGQIRIDGGRVKNDMRLVVGQSIRVPPLFTDKKDGFPVINKTICGQDDRIT-LKNILL 96
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMG 266
Y DS I V NKP + ++G + +D++ A + E P+LVHRLDRE+SG+L++
Sbjct: 97 YEDSKIFVFNKPAGLAVQGGSGLTRHVDSMLEAWRNKK-GEKPRLVHRLDRETSGILVVA 155
Query: 267 RTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
R++ + +LT F K+ YWALV G P++KQ I +++ +
Sbjct: 156 RSRGAAQVLTAAFRARETKKT---------------YWALVRGVPRKKQDKISTWMAREI 200
Query: 327 LDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEAL 386
R+ + S A++ YRVL SW+E+ P T R HQLRVH A +
Sbjct: 201 TTQADKMRVCEHRQPD---SNHAISYYRVLDTRGKSLSWLEMEPYTGRTHQLRVHAAH-I 256
Query: 387 GTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHC 446
PI+GD KY +F W ++PR VQ LHLH
Sbjct: 257 NHPIIGDSKY-FFSDSNW-ELPR-------------------GVQN--------RLHLHA 287
Query: 447 RELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
R ++ + P G +L A +P HM S+N+ +
Sbjct: 288 RRIRIPH--------PSG-GILDITAPLPPHMVQSFNIFA 318
>gi|254558792|ref|YP_003065887.1| pseudouridylate synthase [Methylobacterium extorquens DM4]
gi|254266070|emb|CAX21822.1| pseudouridylate synthase [Methylobacterium extorquens DM4]
Length = 468
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 133/258 (51%), Gaps = 32/258 (12%)
Query: 143 SFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYL 201
S V +G+++ ++ K N+ +EPG+ + +P ++ + P + D ++L
Sbjct: 172 SIVRKGELRVDGKRAKPNDRLEPGSSVRVPPLKLDQPTER-----PRSAAKIDGD-AEFL 225
Query: 202 RRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
R L+ Y D+ +++LNKP + ++G +D L A D + P+LVHRLD++++G
Sbjct: 226 RSLILYEDADMMILNKPFGLAVQGGSGTVRHVDGLLEALTGPD-GQRPRLVHRLDKDTAG 284
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
L++ +T+ + S L F A + YWALV G P+ +QG +
Sbjct: 285 CLIVAKTRLAASTLAKSFR---------------SRAARKIYWALVAGVPRTRQGRV--- 326
Query: 322 LSKVLLDDGKTE---RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
S L+ D T+ R+ +A++ G + + A+T Y + +W+ L+P+T R HQL
Sbjct: 327 -STYLVKDEPTDADARMRVAKH-GDDGASHALTYYATVDQAAQKLAWLSLKPVTGRTHQL 384
Query: 379 RVHCAEALGTPIVGDYKY 396
R H A +G PIVGD KY
Sbjct: 385 RAHAAH-IGHPIVGDPKY 401
>gi|414162181|ref|ZP_11418428.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410879961|gb|EKS27801.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 413
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 133/287 (46%), Gaps = 59/287 (20%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D LR++V + D ++VLNKP + ++G + +D + + + P+LVHRLDRE
Sbjct: 170 DELRKMVLFEDDDVMVLNKPAGLAVQGGSGLTRHVDGMLEV-MRDAKGQRPRLVHRLDRE 228
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG LL+ +T+ + S LT F + +S K YWALV G PK KQG I
Sbjct: 229 TSGCLLIAKTRFAASTLTGSF----RHRSARKI-----------YWALVAGVPKPKQGRI 273
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
L+K ++ + + I+ G E + A+T Y V+ +W+ L+P+T R HQL
Sbjct: 274 STYLAK---EENEEDSIMRVAAHGDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQL 330
Query: 379 RVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSK 438
R H A + IVGD KY F W+ P GL +
Sbjct: 331 RAHMAH-IDHAIVGDPKY--FNKENWQL------------------PGGLQNR------- 362
Query: 439 VPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
LHL R + + P P G ++ A +P HM SWNL+
Sbjct: 363 ---LHLLARRI----VIP----HPRG-GVIDVTAPLPPHMLQSWNLL 397
>gi|260577148|ref|ZP_05845125.1| pseudouridine synthase, RluA family [Rhodobacter sp. SW2]
gi|259020622|gb|EEW23941.1| pseudouridine synthase, RluA family [Rhodobacter sp. SW2]
Length = 349
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 132/295 (44%), Gaps = 51/295 (17%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
+A + ++ V ++D I+VLNKPP +P +G + AL + Y E PKLVH
Sbjct: 82 SAADTKMIQSCVLFKDEHIIVLNKPPGLPSQGGSGQGDRHVDGLTEALKFGYKERPKLVH 141
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLD+++SG+L++ RT L+ F N K YWALV G P
Sbjct: 142 RLDKDTSGVLILARTDRVARALSEAFRHRNTRKI---------------YWALVAGVPHP 186
Query: 314 KQGIIHAPLSKV--LLDDGKTERIIL---AQNSGLEASQEAMTEYRVLGPMINGCSWIEL 368
+QG I L K G+ E+++ A+ + ++ A T+Y VL + + SW+ L
Sbjct: 187 RQGSIKYALMKAPGHGRGGEGEKMLCIHPAKTADYPDAKRAQTDYFVLWFLGSRLSWVAL 246
Query: 369 RPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGL 428
P+T R HQLR H AE +G PI+ + G DG
Sbjct: 247 EPITGRTHQLRAHMAE-MGHPIL--------------------GDGKYGGGGADNLGDGW 285
Query: 429 DVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWN 483
Q G +S+ LHLH R L ++ P ++ FVA +P HM +W
Sbjct: 286 GAQVGGDISRK--LHLHARSLSVEH--------PITKAMMTFVAQLPEHMAKTWK 330
>gi|451942151|ref|YP_007462788.1| ribosomal large subunit pseudouridine synthase C [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
gi|451901538|gb|AGF76000.1| ribosomal large subunit pseudouridine synthase C [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
Length = 327
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 131/291 (45%), Gaps = 58/291 (19%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
D+ L++++ Y D+ + V NKP + ++G + +D + + E P+LVHRL
Sbjct: 86 DDGTVLKKMLLYEDAKVFVFNKPAGLAVQGGSGLTRHVDVMLEVWRNKK-GEKPRLVHRL 144
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DRE+SG+L++ R++ + LT F K+ YWALV G PK+ Q
Sbjct: 145 DRETSGVLIVARSRGAAQALTAAFRTRETKKT---------------YWALVRGVPKKNQ 189
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I + K G R+ G S A++ YRVL SW+E+ P T R
Sbjct: 190 DKISTWMVKENTAQGDKMRVC---EHGEPDSSHAVSYYRVLDTRGRTLSWLEMEPYTGRT 246
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A + PI+GD KY +F WK P G+ +
Sbjct: 247 HQLRVHAAH-IDHPIIGDPKY-FFSDSNWKL------------------PGGIQNR---- 282
Query: 436 LSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R ++ + P G +L VA +P HM S+NL++
Sbjct: 283 ------LHLHARRIRIPH--------PSG-GILDIVAPLPPHMVQSFNLLA 318
>gi|154248685|ref|YP_001419643.1| RluA family pseudouridine synthase [Xanthobacter autotrophicus Py2]
gi|154162770|gb|ABS69986.1| pseudouridine synthase, RluA family [Xanthobacter autotrophicus
Py2]
Length = 364
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 142/302 (47%), Gaps = 40/302 (13%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM-GDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
W K +F ++ +Q G V+++ + S VE GQ I + EP +
Sbjct: 20 WFKVHFPDLSFGHLQKLVRTGQVRVDGGRVKTSSRVEPGQSVRIPPLGDEPQDEPAGKPG 79
Query: 170 LPVSMVE-GRISKRYDTIPSGTLNPNA--------------DEIDYLRRLVKYRDSAILV 214
E GR+S + SGT A ++ +L+ + + D ++V
Sbjct: 80 AAGKASEAGRVSAGGEA--SGTTEAPAKPRQSASAAKRKEDEDRAFLKSITLFEDKDVMV 137
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
LNKP + ++G + MD + D + P+LVHR+D+++SG LL+ +T+ + S+
Sbjct: 138 LNKPYGLAVQGGSGTYRHMDGILEVLRDKD-GQKPRLVHRIDKDTSGCLLVAKTRFAASV 196
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
L F +S+ K YWA+V G PK KQG I S L D E+
Sbjct: 197 LAKSF----RSREARKV-----------YWAVVPGVPKPKQGRI----STYLARDEDEEK 237
Query: 335 IILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDY 394
+ +A++ EAS A+T Y V+ SW+ L+P+T R HQLR H A +G PIVGD
Sbjct: 238 MRVARHGEDEASH-AITYYAVVDQAAQKMSWLSLKPVTGRTHQLRAHLAH-IGHPIVGDP 295
Query: 395 KY 396
KY
Sbjct: 296 KY 297
>gi|389694600|ref|ZP_10182694.1| pseudouridine synthase, RluA family [Microvirga sp. WSM3557]
gi|388587986|gb|EIM28279.1| pseudouridine synthase, RluA family [Microvirga sp. WSM3557]
Length = 435
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 20/203 (9%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
+ D+ D+L+ + Y D +L++NKP + ++G +D L + L D + P+LVH
Sbjct: 186 DQDDRDFLKSITLYEDKDVLIINKPMGLAVQGGSGTKRHVDGLLES-LKDDEGQKPRLVH 244
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLD++++G L++ +T+ + S + F ++++ K YWALV G P+
Sbjct: 245 RLDKDTAGCLVIAKTRFAASTMAKSF----RARTTRKI-----------YWALVAGVPRV 289
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
KQG + L+K D+G + R+ +A++ G E + A+T Y V+ +W+ L+P+T
Sbjct: 290 KQGRVSTYLAKEG-DEGDS-RMRVARH-GDEGASHALTYYAVVDTSAQKLAWLSLKPVTG 346
Query: 374 RKHQLRVHCAEALGTPIVGDYKY 396
R HQLR H A +G PIVGD KY
Sbjct: 347 RTHQLRAHTAH-IGHPIVGDPKY 368
>gi|329889168|ref|ZP_08267511.1| pseudouridine synthase, RluA family protein [Brevundimonas diminuta
ATCC 11568]
gi|328844469|gb|EGF94033.1| pseudouridine synthase, RluA family protein [Brevundimonas diminuta
ATCC 11568]
Length = 331
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 105/204 (51%), Gaps = 27/204 (13%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG---PKLVH 253
+I Y + LV Y D ++ LNKP + ++G +D L +A + EG P+LVH
Sbjct: 86 DIAYAKSLVLYEDHMVIALNKPHGLAVQGGTKTTKHIDRLLSA-----WGEGMDRPRLVH 140
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG+LL+G+ E+ L F+ K+ YWA+VIG+PK
Sbjct: 141 RLDRDTSGVLLLGKGPEAAKRLAGAFARRQAKKT---------------YWAIVIGNPKP 185
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
G I L K ++D + R ++ E ++ T + + + +W+ LRP T
Sbjct: 186 SAGQIDMALKKTGINDFEMMRPAEPKDPKGEPAE---TAFATISRAAHRAAWMALRPFTG 242
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQLR H A A+G PI+GD KYG
Sbjct: 243 RTHQLRAHMA-AIGHPILGDPKYG 265
>gi|188579622|ref|YP_001923067.1| pseudouridine synthase [Methylobacterium populi BJ001]
gi|179343120|gb|ACB78532.1| pseudouridine synthase, RluA family [Methylobacterium populi BJ001]
Length = 446
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 132/258 (51%), Gaps = 32/258 (12%)
Query: 143 SFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYL 201
S V +G+++ ++ K N+ +EPG+ + +P +E + P D ++L
Sbjct: 150 SIVRKGELRVDGKRAKPNDRLEPGSSVRVPPLKLEQPTDR-----PRSAAKVVGD-AEFL 203
Query: 202 RRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
R L+ Y D+ +++LNKP + ++G +D L A D + P+LVHRLD++++G
Sbjct: 204 RSLILYEDADMMILNKPFGLAVQGGSGTVRHVDGLLEALTGPD-GQRPRLVHRLDKDTAG 262
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
L++ +T+ + + L F A + YWALV G P+ +QG +
Sbjct: 263 CLIVAKTRLAAATLAKSFR---------------SRAARKIYWALVAGVPRTRQGRV--- 304
Query: 322 LSKVLLDDGKTE---RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
S L+ D T+ R+ +A++ G E + A+T Y + +W+ L+P+T R HQL
Sbjct: 305 -STYLVKDEPTDADARMRVAKH-GDEGASHALTYYATVDQAAQKLAWLSLKPVTGRTHQL 362
Query: 379 RVHCAEALGTPIVGDYKY 396
R H A +G PIVGD KY
Sbjct: 363 RAHAAH-IGHPIVGDPKY 379
>gi|288962105|ref|YP_003452400.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
gi|288914371|dbj|BAI75856.1| ribosomal large subunit pseudouridine synthase C [Azospirillum sp.
B510]
Length = 257
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 113/219 (51%), Gaps = 31/219 (14%)
Query: 184 DTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY 243
D+ PS +L+ LR V +RD V++KP + + + + ++ L L+
Sbjct: 4 DSPPSASLSAG-----QLRARVLHRDELCFVIDKPAGLAVHKAGRITDHLE-LYLPHLAE 57
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
E PKL HRLDR+++G L++GRT ++ +F+ + K+ Y
Sbjct: 58 ADGEPPKLAHRLDRDTAGCLILGRTPWALKRFGQMFAAGHVEKT---------------Y 102
Query: 304 WALVIGSPKEKQGIIHAPLSKVL-----LDDGKTERIILAQNSGLEASQEAMTEYRVLGP 358
WA+ G P+ G+I PL K + G++ IL +G Q A+TEYRVLG
Sbjct: 103 WAVADGVPEAGSGVIDLPLLKRIEPKSPSGAGRSSWTILPDPAG----QPAVTEYRVLGT 158
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+G W+ELRP T R HQ+RVHCA A+G P+VG+ YG
Sbjct: 159 AADGRCWLELRPRTGRTHQIRVHCA-AIGCPLVGEPFYG 196
>gi|414174042|ref|ZP_11428669.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
gi|410890676|gb|EKS38475.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
Length = 408
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 59/289 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ LR+++ + D+ ++VLNKP + ++G + +D + A + + P+LVHRLDR
Sbjct: 164 LEDLRKMILFEDADVMVLNKPAGLAVQGGSGMTKHVDQMLEA-MRDAKGQKPRLVHRLDR 222
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + S LT F + +S K YWALV G PK KQG
Sbjct: 223 ETSGCLLIAKTRFAASALTGSF----RHRSARKI-----------YWALVAGVPKPKQGR 267
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K ++ + + I+ G E + A+T Y V+ +W+ L+P+T R HQ
Sbjct: 268 ISTYLAK---EESEEDSIMRVAAHGDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQ 324
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H A + IVGD KY F W+ P G+ +
Sbjct: 325 LRAHMAH-IDHAIVGDPKY--FNKENWEL------------------PGGIQKR------ 357
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P P G + A +P HM SWNL+
Sbjct: 358 ----LHLLARRI----VIP----HPRG-GFIDVTAPLPPHMLQSWNLLG 393
>gi|145355458|ref|XP_001421978.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582217|gb|ABP00272.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 321
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 143/296 (48%), Gaps = 56/296 (18%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ +R V + D + V++KPP + V S+ L A L +Y +VHRLDR
Sbjct: 8 VEAIRARVLHADEHVTVVDKPPGLATTRGNGVDVSVYDLRHA-LDSEY-----VVHRLDR 61
Query: 258 ESSGLLLMGRTKESVSLLTWLFS-----DVNKSKSLSKAWNDA----CEAMYQRYWALVI 308
++SG+L++ RT + + L +F+ D + DA + + + YWAL
Sbjct: 62 DTSGVLVLARTAFAANRLNAMFAKKSRMDFTEIMRADMERGDAPSLSNDPVVKTYWALTS 121
Query: 309 GSP--KEKQGIIHAPLSKVLLDDG-KTERII-----------------------LAQNSG 342
P + G I APL++V DG T R++ + ++G
Sbjct: 122 NPPPRGARSGWIEAPLTEVGDGDGYSTARLVGGWRVYDAKGGGVVVGTGESMRDKSNDAG 181
Query: 343 LEASQEAMTEYRVLGPM-INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVH 401
AS+ AMT ++VL +G + +EL P+T RKHQLRVH A+AL +PI+GDYKYG+
Sbjct: 182 SPASKAAMTHFKVLASAGEDGPTLLELTPITGRKHQLRVHLAKALSSPIIGDYKYGFNDR 241
Query: 402 R-----RWKQMPRVDIEPTSGKPY--KLRRPDGLDVQKGSVLSKVPLLHLHCRELK 450
R R+ + D+E + KLRR V SK+P LHLH R L+
Sbjct: 242 RAPWKSRFTDIESADVESEKESDFWRKLRRASLRGV------SKIP-LHLHARALQ 290
>gi|115525546|ref|YP_782457.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
BisA53]
gi|115519493|gb|ABJ07477.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris BisA53]
Length = 458
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 132/285 (46%), Gaps = 59/285 (20%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L+ ++ Y D+ ++VLNKP + ++G +D L + + P+LVHRLD+E++
Sbjct: 217 LKAMILYEDADVMVLNKPAGLAVQGGSGTTRHVD-LMLEVMRDSKGQKPRLVHRLDKETA 275
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ +T+ + + LT F +S+S K YWALV G PK KQG I
Sbjct: 276 GCLLVAKTRFAATALTGSF----RSRSARKV-----------YWALVAGVPKPKQGRIST 320
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+K D+ + + I+ G E + A+T Y V+ +W+ L+P+T R HQLR
Sbjct: 321 YLAK---DESEDDSIMRVAAHGDEGASHAVTYYAVVETSAQKLAWVSLKPVTGRTHQLRA 377
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
H A +G I+GD KY F W+ P GL +
Sbjct: 378 HMAH-IGHAIIGDPKY--FNIENWEL------------------PGGLQKR--------- 407
Query: 441 LLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
LHL R + + P G ++ A +P HM SWNL+
Sbjct: 408 -LHLLARRIAIPH--------PRG-GVIDVTAPLPPHMLQSWNLL 442
>gi|338975000|ref|ZP_08630355.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobiaceae
bacterium SG-6C]
gi|338231599|gb|EGP06734.1| ribosomal large subunit pseudouridine synthase C [Bradyrhizobiaceae
bacterium SG-6C]
Length = 424
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 134/289 (46%), Gaps = 59/289 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ LR+++ + D ++VLNKP + ++G + +D + + + P+LVHRLDR
Sbjct: 180 LEELRKMILFEDEDLMVLNKPAGLAVQGGSGMTKHVDQMLEV-MRDAKGQKPRLVHRLDR 238
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + S LT F + +S K YWALV G PK KQG
Sbjct: 239 ETSGCLLIAKTRFAASALTGSF----RHRSARKI-----------YWALVAGVPKPKQGR 283
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K ++ + + I+ G E + A+T Y V+ +W+ L+P+T R HQ
Sbjct: 284 ISTYLAK---EESEEDSIMRVAEHGDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQ 340
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H A + IVGD KY F W Q+P G +
Sbjct: 341 LRAHMAH-INHAIVGDPKY--FNKENW-QLP------------------------GGIQK 372
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ LHL R + + P P G + A +P HM SWNL+
Sbjct: 373 R---LHLLARRI----VIP----HPRG-GFIDVTAPLPPHMLQSWNLLG 409
>gi|329851361|ref|ZP_08266118.1| pseudouridine synthase, RluA family protein [Asticcacaulis
biprosthecum C19]
gi|328840207|gb|EGF89779.1| pseudouridine synthase, RluA family protein [Asticcacaulis
biprosthecum C19]
Length = 334
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 108/204 (52%), Gaps = 27/204 (13%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG---PKLVH 253
EI Y R LV Y D ++ +NKP + ++G N +D L +A + EG P+LVH
Sbjct: 88 EIRYARSLVLYEDEDVIAINKPSGLAVQGGTKTKNHVDRLLSA-----WGEGLERPRLVH 142
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG+LL+G++ + + L F+ +K+ YWALV+G+PK
Sbjct: 143 RLDRDTSGVLLLGKSPSAAARLAGAFAKRRANKT---------------YWALVVGNPKP 187
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
++G I PL K D I+ + ++ A TEY +G +W+ LRP T
Sbjct: 188 EEGYIDTPLIKKGFHD---REIVQPADPKEPGAEPAETEYVTIGRAGPRVAWMGLRPHTG 244
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQLR H +A+G I+GD KYG
Sbjct: 245 RTHQLRAHM-QAIGHSILGDPKYG 267
>gi|302382665|ref|YP_003818488.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
gi|302193293|gb|ADL00865.1| pseudouridine synthase, RluA family [Brevundimonas subvibrioides
ATCC 15264]
Length = 350
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 105/204 (51%), Gaps = 27/204 (13%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG---PKLVH 253
+I + + +V Y D ++ LNKP + ++G +D L +A + EG P+LVH
Sbjct: 105 DIAFAKSMVIYEDDLVIALNKPWGLAVQGGTKTTRHVDRLLSA-----WGEGMERPRLVH 159
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG+LL+G+ E+ L F+ K+ YWA+V+G PK
Sbjct: 160 RLDRDTSGVLLLGKGPEAAKRLAGAFARRQAKKT---------------YWAIVMGLPKP 204
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
G I L K ++D + R ++ G E ++ T Y V+ SW+ LRP T
Sbjct: 205 ADGQISVHLKKSGINDYEIMRPADPKDPGAEPAE---TAYAVISHAAQRASWMALRPFTG 261
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQLR H +A+G PI+GD KYG
Sbjct: 262 RTHQLRAHM-KAIGHPILGDPKYG 284
>gi|414167314|ref|ZP_11423543.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
gi|410891131|gb|EKS38929.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
Length = 415
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 134/289 (46%), Gaps = 59/289 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ LR+++ + D ++VLNKP + ++G + +D + + + P+LVHRLDR
Sbjct: 171 LEELRKMILFEDEDLMVLNKPAGLAVQGGSGMTKHVDQMLEV-MRDAKGQKPRLVHRLDR 229
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ +T+ + S LT F + +S K YWALV G PK KQG
Sbjct: 230 ETSGCLLIAKTRFAASALTGSF----RHRSARKI-----------YWALVAGVPKPKQGR 274
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K ++ + + I+ G E + A+T Y V+ +W+ L+P+T R HQ
Sbjct: 275 ISTYLAK---EESEEDSIMRVAEHGDEGAAHAVTYYAVVEASAQKLAWVSLKPVTGRTHQ 331
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H A + IVGD KY F W Q+P G +
Sbjct: 332 LRAHMAH-INHAIVGDPKY--FNKENW-QLP------------------------GGIQK 363
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
+ LHL R + + P P G + A +P HM SWNL+
Sbjct: 364 R---LHLLARRI----VIP----HPRG-GFIDVTAPLPPHMLQSWNLLG 400
>gi|170747290|ref|YP_001753550.1| RluA family pseudouridine synthase [Methylobacterium radiotolerans
JCM 2831]
gi|170653812|gb|ACB22867.1| pseudouridine synthase, RluA family [Methylobacterium radiotolerans
JCM 2831]
Length = 471
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 159/346 (45%), Gaps = 66/346 (19%)
Query: 143 SFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYL 201
+ V +G+++ ++ K N+ +EPG + +P ++ + P D+ ++
Sbjct: 175 TIVRKGELRVDGKRAKPNDRLEPGMSVRVPPLRLDQPTER-----PRSAAR-EQDDAAFI 228
Query: 202 RRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
R L+ Y D+ +++LNKP + ++G +D L AA D + P+LVHRLD++++G
Sbjct: 229 RSLILYEDADMMILNKPFGLAVQGGSGTVRHVDGLLAALTGPD-GQKPRLVHRLDKDTAG 287
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
L++ +T+ + + L F A + YWAL G P+ +QG +
Sbjct: 288 CLIIAKTRLAAATLAKSFR---------------SRAARKIYWALTAGVPRVRQGRVSTY 332
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L+K D R+ +A++ G E + A+T Y ++ SW+ +P+T R HQLR H
Sbjct: 333 LAKEEPTDADA-RMRVAKH-GDEGASHALTYYAMVDQAAQKLSWLSFKPVTGRTHQLRAH 390
Query: 382 CAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPL 441
A +G PIVGD KY F W ++P G + ++
Sbjct: 391 AAH-IGHPIVGDPKY--FSVENW-ELP------------------------GGIQNR--- 419
Query: 442 LHLHCRELKSDNLFP-TLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P + KP + A +P HM SWNL+
Sbjct: 420 LHLLARRI----VIPHPRTGKP-----VDVSAPLPPHMAQSWNLLG 456
>gi|23012328|ref|ZP_00052441.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 456
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 134/260 (51%), Gaps = 36/260 (13%)
Query: 143 SFVEQGQMK-PIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPN--ADEID 199
S V +G+++ ++ K ++ +EPG+ + +P + D +PN A + +
Sbjct: 160 SIVRKGELRVDGKRAKPSDRLEPGSSVRVP--------PLKLDQPTDRPRSPNKVAGDAE 211
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRES 259
+LR L+ Y D+ +++LNKP + ++G +D L A D + P+LVHRLD+++
Sbjct: 212 FLRSLILYEDADMMILNKPFGLAVQGGSGTVRHVDGLLEALTGPD-GQRPRLVHRLDKDT 270
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
+G L++ +T+ + + L F A + YWALV G P+ +QG +
Sbjct: 271 AGCLIIAKTRLAAATLAKSFR---------------SRAARKIYWALVAGVPRTRQGRV- 314
Query: 320 APLSKVLLDDGKTE---RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
S L+ D T+ R+ +A++ G + + A+T Y + +W+ L+P+T R H
Sbjct: 315 ---STYLVKDEPTDADARMRVAKH-GDDGASHALTYYATVDQAAQKLAWLSLKPVTGRTH 370
Query: 377 QLRVHCAEALGTPIVGDYKY 396
QLR H A +G PIVGD KY
Sbjct: 371 QLRAHAAH-IGHPIVGDPKY 389
>gi|402820828|ref|ZP_10870391.1| hypothetical protein IMCC14465_16250 [alpha proteobacterium
IMCC14465]
gi|402510331|gb|EJW20597.1| hypothetical protein IMCC14465_16250 [alpha proteobacterium
IMCC14465]
Length = 329
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 135/290 (46%), Gaps = 64/290 (22%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG--PKLVHRLD 256
+ + + V Y D+ ++ LNKP + ++G +DAL L N+G P+LVHRLD
Sbjct: 87 EMILKTVIYEDADVIALNKPSGLAVQGGSKTDWHVDAL----LDVLANKGERPRLVHRLD 142
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG+LL+ + +++ S LT F+D K YWALV G P+ +QG
Sbjct: 143 RDTSGVLLLAKHRKAASTLTKAFADRETRKI---------------YWALVHGVPRPEQG 187
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I L K DG ER+ A++ ++A + A+T + V+G SW+ P+T R H
Sbjct: 188 DIKLKLVKRAAGDG-NERVRPAEDHDIDAMR-AITRFSVVGRAGQVFSWVAFMPITGRTH 245
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVL 436
Q+R H A A+G P+VGD KY +P +IE P K
Sbjct: 246 QIRAH-ALAIGHPLVGDNKYA---------LP--EIEAGGELPNK--------------- 278
Query: 437 SKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R + + P G L A + +HM SW L+
Sbjct: 279 -----LHLHARMIDMPH--------PSG-GRLTVAADLQAHMAESWGLLG 314
>gi|144897601|emb|CAM74465.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1]
Length = 230
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 110/202 (54%), Gaps = 30/202 (14%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHL--PVHNSMDALAAAALSYDYNEGPKLVHRLD 256
D L V YRD+ +L+++KP + + H+ MD L L + P+L HRLD
Sbjct: 4 DELLARVLYRDAMVLIIDKPAGLAVHAGARDGSHHLMDLLEP--LRFGLPRNPELAHRLD 61
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG L++GR +++++ L +F+ K+ YWA+V+G P + G
Sbjct: 62 RDTSGCLVLGRHRKALARLGEIFAGSEAQKT---------------YWAVVVGKPPAESG 106
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRK 375
II L K L+ R+++ + Q+A+TEYRVLG NG SWIE +P T R
Sbjct: 107 IIDKRLKK--LERRHGWRMVVD-----DKGQDAVTEYRVLGG--NGRLSWIEAKPRTGRT 157
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A A+G PIVGD YG
Sbjct: 158 HQIRVHLA-AIGCPIVGDSTYG 178
>gi|49475763|ref|YP_033804.1| ribosomal large subunit pseudouridine synthase c [Bartonella
henselae str. Houston-1]
gi|49238570|emb|CAF27811.1| Ribosomal large subunit pseudouridine synthase c [Bartonella
henselae str. Houston-1]
Length = 327
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 135/301 (44%), Gaps = 59/301 (19%)
Query: 186 IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
+ TL DE+ L++++ Y D I V NKP + ++G + +D++ +
Sbjct: 77 VTDKTLRGQDDEV-ILKKMLLYEDPKIFVFNKPAGLAVQGGSGLTRHVDSMLRVWRNKK- 134
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
E P+LVHRLDRE+SG+L++ R++ + LT F K+ YWA
Sbjct: 135 GEKPRLVHRLDRETSGVLIVARSRGAAQALTTAFRTRETKKT---------------YWA 179
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
LV G PK+KQ I + K + R+ G S A++ YRV+ SW
Sbjct: 180 LVRGVPKKKQDKISTWMVKDISTQVDKMRVC---EHGEPDSYHAVSYYRVVDTRGRALSW 236
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRP 425
+E+ P T R HQLRVH A + PI+GD KY +F W P
Sbjct: 237 LEMEPYTGRTHQLRVHAAH-MDHPIIGDAKY-FFSDSNWTL------------------P 276
Query: 426 DGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
G+ + LHLH R ++ + P G +L VA +P HM S+NL+
Sbjct: 277 GGIQNR----------LHLHARRIRIPH--------PSG-GILDIVAPLPPHMVQSFNLL 317
Query: 486 S 486
+
Sbjct: 318 A 318
>gi|315500130|ref|YP_004088933.1| pseudouridine synthase, rlua family [Asticcacaulis excentricus CB
48]
gi|315418142|gb|ADU14782.1| pseudouridine synthase, RluA family [Asticcacaulis excentricus CB
48]
Length = 335
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 27/203 (13%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG---PKLVH 253
E+ Y + LV Y D ++ +NKP + ++G N +D L +A + EG P+LVH
Sbjct: 88 EVRYAKSLVLYEDEDVIAINKPSGLAVQGGTKTKNHIDRLLSA-----WGEGLERPRLVH 142
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG+LL+G+ S S L K K+ Y+ YWALV G+P
Sbjct: 143 RLDRDTSGVLLLGK---SPSAAARLAGAFAKRKA------------YKTYWALVAGTPDP 187
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
K+G+I PL K ++D +++ + ++ A TEY + + +W+ LRP T
Sbjct: 188 KEGVIDVPLVKKGIND---REMVMPADPKEPGAEAAETEYVTISRAAHRLAWMALRPHTG 244
Query: 374 RKHQLRVHCAEALGTPIVGDYKY 396
R HQLR H +A+G I+GD KY
Sbjct: 245 RTHQLRAHM-QAIGHCILGDPKY 266
>gi|354594043|ref|ZP_09012086.1| hypothetical protein CIN_07820 [Commensalibacter intestini A911]
gi|353673154|gb|EHD14850.1| hypothetical protein CIN_07820 [Commensalibacter intestini A911]
Length = 325
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 131/282 (46%), Gaps = 61/282 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L+ + Y+D + V+NKP + ++G V N +D + A L +D P LVHRLD+++S
Sbjct: 87 LKEWIIYQDDDLFVINKPSGIAVQGGSNVTNHIDGILEA-LQFDSKYRPSLVHRLDKDTS 145
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL+ R + + L F +S+ + K YWA+ P G I
Sbjct: 146 GLLLIARHPAAAAKLAAAF----RSRDMKKT-----------YWAITTRRPSPLSGRIDL 190
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL KV +G I A ++ + +Q A+TEY V + +EL PLT R HQLRV
Sbjct: 191 PLLKVEYQNGSH---IEAADAKNKEAQRAITEYEVKDFAARKLALVELYPLTGRMHQLRV 247
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
HCAE + PI+GD KY K+MP + DG +
Sbjct: 248 HCAE-MKAPILGDKKYN-------KEMPFM---------------DGFSQR--------- 275
Query: 441 LLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISW 482
LHLH R+L + P G LL A++P HMK ++
Sbjct: 276 -LHLHARQLDMPH--------PSGGRLL-VEAALPPHMKETF 307
>gi|90424892|ref|YP_533262.1| pseudouridine synthase RluD [Rhodopseudomonas palustris BisB18]
gi|90106906|gb|ABD88943.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris BisB18]
Length = 501
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 102/196 (52%), Gaps = 20/196 (10%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
LR ++ Y D+ ++VLNKP + ++G +D L + + P+LVHRLD+E++
Sbjct: 260 LRAMILYEDADVMVLNKPAGLAVQGGSGTTRHVD-LMLEVMRDAKGQKPRLVHRLDKETA 318
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ +T+ + + LT F + + K YWALV G PK KQG I
Sbjct: 319 GCLLIAKTRFAATALTGAFRERSARKV---------------YWALVAGVPKPKQGRIST 363
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+K +D RI G E + A+T Y V+ + +W+ L+P+T R HQLR
Sbjct: 364 YLAKEESEDDTIMRIA---EHGDEGASHAVTYYAVVETSASKLAWVSLKPVTGRTHQLRA 420
Query: 381 HCAEALGTPIVGDYKY 396
H A +G IVGD KY
Sbjct: 421 HMAH-IGHAIVGDPKY 435
>gi|254294409|ref|YP_003060432.1| pseudouridine synthase [Hirschia baltica ATCC 49814]
gi|254042940|gb|ACT59735.1| pseudouridine synthase, RluA family [Hirschia baltica ATCC 49814]
Length = 343
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 166/376 (44%), Gaps = 77/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W+K F + ++ KG V+++ + + K++ +EPG + +
Sbjct: 25 WLKRRFPGLTQGQVEKLLRKGEVRVDGS----------------RAKSSTRLEPGQVVRV 68
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P + K ++P E+ ++ L+ Y D + VLNKP + ++G
Sbjct: 69 PPMPSTDQGKKHPQKEEEVYVSPRDAEL--IQSLILYEDEDVYVLNKPSGLAVQGGTKTL 126
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D +A A L+ + P+LVHRLD+++SGLL++ +T +S + ++ F +S+ L K
Sbjct: 127 RHVDGMANA-LTRPGQDKPRLVHRLDKDTSGLLVLAKTAQSAAEMSKHF----RSRELDK 181
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWA+V G P +G + + K G+ + ++ A G + + A+
Sbjct: 182 I-----------YWAVVKGVPNPNEGELRGWMMKAH-GPGQDKELMTAGVHGQKGAVFAI 229
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
T+++V+ SW+ L+P T RKHQLR H +E +G I+GD KY
Sbjct: 230 TDFKVVSTAGQRASWVALKPSTGRKHQLRYHMSE-IGNSILGDAKY------------TC 276
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
D E +G P P LHLH R L+ + G D +
Sbjct: 277 DRETPAGLP--------------------PGLHLHARALR--------MPRRRGSD-VEV 307
Query: 471 VASMPSHMKISWNLMS 486
+A +P HMK +++
Sbjct: 308 IAPLPEHMKKTFDFFG 323
>gi|374998032|ref|YP_004973531.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
gi|357425457|emb|CBS88343.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
Length = 226
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 104/193 (53%), Gaps = 24/193 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ YRD +L+L+KP +P+ P AL + + + P L HRLDR++SG L+
Sbjct: 10 ILYRDGLMLILDKPAGLPVHAG-PAGGPNLERHFDALRFGFPKPPSLAHRLDRDTSGCLI 68
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+GR +++ + LF + K+ YWA+V G+P ++ G I PL+K
Sbjct: 69 LGRHAKALRKIGILFQNGKVDKT---------------YWAVVAGAPPQESGRIELPLAK 113
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
V G RI+ G Q A+T+Y V G +G +W+EL P T R HQ+RVHCA
Sbjct: 114 VSNKTGGW-RIV-----GSPDGQTAVTDYVVRG-QADGLTWLELTPHTGRTHQIRVHCA- 165
Query: 385 ALGTPIVGDYKYG 397
++G P+VGD +YG
Sbjct: 166 SIGCPLVGDPQYG 178
>gi|113931514|ref|NP_001039205.1| RNA pseudouridylate synthase domain-containing protein 4 [Xenopus
(Silurana) tropicalis]
gi|123892314|sp|Q28C59.1|RUSD4_XENTR RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|89268931|emb|CAJ83700.1| RNA pseudouridylate synthase domain containing 4 [Xenopus
(Silurana) tropicalis]
Length = 324
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 142/296 (47%), Gaps = 63/296 (21%)
Query: 194 NADEIDYLRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN---E 247
NA I YLR L V D ++++NKP +P+ G V S+ +L A + + E
Sbjct: 37 NAPTIVYLRELKSQVVREDPELVLVNKPHGLPVHGGPTVERSVASLLPALAKHHFGWKAE 96
Query: 248 GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
KL HRLDR+++G L++ RT E+ ++ + +A + +++ YWAL
Sbjct: 97 PLKLCHRLDRDTTGALILARTTEA-------------AERVQQALRE--REVHRVYWALC 141
Query: 308 IGSPKEKQGIIHAPLS-----------KVLL-------DDGKTERIILAQNSGLEASQEA 349
+G+P ++GI+ P+ K+ L ++G ER+ + +++ EA
Sbjct: 142 LGTPSPREGILDIPIMEKETSGPQKHYKMALSPRFRVSEEGAVERVRVPRSA-----HEA 196
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR 409
+T YR LG +G S +EL P+T KHQLRVH A L PI+GD+KY + R Q P
Sbjct: 197 VTRYRTLG-AASGASLVELHPITGVKHQLRVHLALGLNCPILGDHKYSHW-GRLAPQKP- 253
Query: 410 VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCREL---KSDNLFPTLSSKP 462
P + R GL V + LS LHLH +L SD P + P
Sbjct: 254 ---------PDSVLRALGLTVPQARTLS----LHLHAVQLTLPSSDGSTPIVLQCP 296
>gi|363742563|ref|XP_001231937.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Gallus gallus]
Length = 354
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 122/235 (51%), Gaps = 43/235 (18%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSM-DAL--AAAALSYDYNEGPKLVHRLDR 257
LR+ Y+D ++VLNKP +P+ G V N + D L A L E L HRLD+
Sbjct: 84 LRQRAVYQDEEVVVLNKPYGLPVHGGPGVKNCIADVLPILAKMLVNMKAEPLHLCHRLDK 143
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ R KE+ + LF K++ + K YWA+ +GSP +GI
Sbjct: 144 ETTGVMVLARNKEAADRIRLLF----KTRQVEKI-----------YWAISVGSPDPAEGI 188
Query: 318 I-----------HAPLSKVLL--------DDGKTERIILAQNSGLEASQEAMTEYRVLGP 358
+ H P K+ L +DGK +I +N+ + A+T+YRVL
Sbjct: 189 VEIPMVEREVQSHQPHFKMTLAPNYRMSPEDGKVLKIRKNRNA-----ESAVTQYRVLAS 243
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIE 413
+ CS +EL+P+T KHQLRVH A LG PI+GD+KY + +++P + ++
Sbjct: 244 S-SACSLLELQPITGVKHQLRVHLAYGLGCPILGDHKYSHWSKLAPQKLPEITLK 297
>gi|117924690|ref|YP_865307.1| pseudouridine synthase [Magnetococcus marinus MC-1]
gi|117608446|gb|ABK43901.1| pseudouridine synthase [Magnetococcus marinus MC-1]
Length = 255
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 106/199 (53%), Gaps = 24/199 (12%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D RL+ YRD +L++NKP +P+ +++AL L + + P L HRLDR+
Sbjct: 10 DLESRLL-YRDGLLLIINKPAGIPVHAGPGGGANLEALFGG-LRFGLPKAPALAHRLDRD 67
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG L++GR +++S L LFS K+ YWA+V G P + QG +
Sbjct: 68 TSGCLVLGRHAKALSKLGKLFSQGKVQKT---------------YWAVVQGGPPQAQGSM 112
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
PL K+ + R+++ G + ++T YRVLG SW+EL P T R HQ+
Sbjct: 113 DFPLYKISTAQ-QGWRMVVDPEQG----KSSLTLYRVLGRSAT-HSWLELTPKTGRTHQI 166
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVHCA +G PI GD +YG
Sbjct: 167 RVHCAH-VGLPIEGDLQYG 184
>gi|452965059|gb|EME70088.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
sp. SO-1]
Length = 219
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 104/192 (54%), Gaps = 27/192 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMG 266
YRD A+LV++KP + + P L AL + N P+L HRLDRE+SG L++G
Sbjct: 3 YRDPAVLVIDKPAGLAVHAG-PKGGEHLMLYLDALRFGLNRRPELAHRLDRETSGCLVLG 61
Query: 267 RTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
RT ++++ L LF+ K+ YWA+V+G P+E+ G I L K
Sbjct: 62 RTAKALAALGELFATGLAGKT---------------YWAVVVGKPREEAGTIDYALKK-- 104
Query: 327 LDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKHQLRVHCAEA 385
+ K + SGL ++TE+R+ G +G SW+E RPLT R HQ+R HCA A
Sbjct: 105 -REKKFGWRMEVDRSGL----ASLTEWRLRGS--DGRLSWLECRPLTGRTHQIRAHCA-A 156
Query: 386 LGTPIVGDYKYG 397
+G P+VGD YG
Sbjct: 157 IGHPLVGDAIYG 168
>gi|315121808|ref|YP_004062297.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495210|gb|ADR51809.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 336
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 66/350 (18%)
Query: 139 NMGD--SFVEQGQMK-PIRKIKTNEVMEPGARIFLP--VSMVEGRISKRYDTIPSGTLNP 193
N G+ + GQ++ R++K+N+ ++ G + +P + +++ KRY S
Sbjct: 33 NFGNLQKLLRSGQIRLDKRRVKSNDRVQSGQVVRIPPIIDVLDHATEKRYSLDSSVDFLK 92
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
N+ +L+ ++ Y D+ + + NKPP + ++G V +D + S + P+L+H
Sbjct: 93 NSA---FLKNILLYEDNKLYIFNKPPGISVQGGSGVTYHIDGFLKS-WSDSKGQKPRLIH 148
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDRE+SG+L++ RT+ + LT F + + + K YW+LV G P+
Sbjct: 149 RLDRETSGILVVARTRAAAQSLTESF----RMRRIRKI-----------YWSLVRGVPQN 193
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
K+ I L K G +++ G + A++ ++V+ W+E++P T
Sbjct: 194 KKECISGWLFKKAKIGGDYVQVVDQNEKG---AHYAISHFKVIDRFEYKFCWLEMQPYTG 250
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKG 433
R HQLRVH A +G PIVGD KY R D ++
Sbjct: 251 RTHQLRVH-ALHVGHPIVGDKKY--------------------------RINDSKEIFSN 283
Query: 434 SVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWN 483
+ +K L+LH R + FP P+G L+ A +P HM +W+
Sbjct: 284 HIQNK---LYLHARYID----FP----HPEGGR-LQITAPLPVHMAKTWD 321
>gi|344923106|ref|ZP_08776567.1| pseudouridine synthase [Candidatus Odyssella thessalonicensis L13]
Length = 323
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 124/249 (49%), Gaps = 25/249 (10%)
Query: 155 KIKTNEV-MEPGARIFL-PVSMVEGRISKRYDTIPSGTLNP----NADEIDYLRRLVKYR 208
KI+ N+ + G RI + V + + K + +P T+ + +EI++ + L+ +
Sbjct: 41 KIRLNDTKVTAGHRIAVGDVVSIWTDLEKYKNVLPQLTMKEAPSLSPEEIEFFKSLIIWE 100
Query: 209 DSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRT 268
D +L++NKP + ++G +D A L N +L HR+DR++SGLL++ +
Sbjct: 101 DEDLLIINKPSGLAVQGGTKTFRHVDRYLAG-LGELNNCRYRLTHRIDRDTSGLLVIAKK 159
Query: 269 KESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLD 328
+ + LT F D K YWA+ +G P+ GI+ APL K +
Sbjct: 160 SDMATHLTQQFKDGKVEKI---------------YWAVTLGQPRPGSGILKAPLIKAGV- 203
Query: 329 DGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGT 388
G E++++ +G A T R+ P + +W+EL+P T R HQLRVHC L
Sbjct: 204 -GDKEKVVVDFETGKPAITVYQTLKRLEKPRLPYMAWVELKPQTGRTHQLRVHCVH-LDA 261
Query: 389 PIVGDYKYG 397
PI+GD KYG
Sbjct: 262 PILGDGKYG 270
>gi|255073601|ref|XP_002500475.1| predicted protein [Micromonas sp. RCC299]
gi|226515738|gb|ACO61733.1| predicted protein [Micromonas sp. RCC299]
Length = 327
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 142/303 (46%), Gaps = 53/303 (17%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHN--SMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
V +RD+ +LV++KP VP++ VH +DA A L +D P VHRLDR+++G
Sbjct: 27 VLHRDADVLVVDKPAGVPMRS---VHGVKGVDAFLAD-LRFDLAHPPMTVHRLDRDTTGC 82
Query: 263 LLMGRTKESVSLLTWLFSDVNK------SKSLSKAWNDACEAMYQRYWALVIG-SPKEKQ 315
L++ RT+E+ L F D + +S ++ + + YWALV S +
Sbjct: 83 LILARTREAQRTLAGYFQDRARVARRGSGRSTKTTSPESLGDVRRVYWALVSATSTLASR 142
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVL--------GPMINGC--SW 365
G I A L V G + L +G ++ A T+Y V+ P G +
Sbjct: 143 GTIDAAL--VTTHAG----VTLKPGAG---AKPAATDYEVISRASPDSCAPTAAGRVPAV 193
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYGW-------FVHRRWKQMPRVDIEPTSGK 418
+ L P T RKHQLRVHCA AL IVGDYKYG+ V W+++ R DI+ S
Sbjct: 194 LALVPRTGRKHQLRVHCAGALDAAIVGDYKYGYRDVSRTGGVADDWRRVLR-DIDERS-- 250
Query: 419 PYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
RR + G V LHLH R ++ + P + +R VA PSHM
Sbjct: 251 ---TRRLNDAGTADGEVRGAGVPLHLHARCVE--------FTHPSSGERVRVVAPAPSHM 299
Query: 479 KIS 481
++
Sbjct: 300 SLA 302
>gi|92117127|ref|YP_576856.1| pseudouridine synthase RluD [Nitrobacter hamburgensis X14]
gi|91800021|gb|ABE62396.1| ribosomal large subunit pseudouridine synthase C [Nitrobacter
hamburgensis X14]
Length = 411
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 134/288 (46%), Gaps = 59/288 (20%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D L+++V + D+ ++VLNKP + ++G + +D + + + P+LVHRLDRE
Sbjct: 168 DELQKMVLFEDADVMVLNKPAGLAVQGGSGLSRHIDGMLEV-MCDAKGQRPRLVHRLDRE 226
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
++G LL+ +T+ + + LT F + +S K YWALV G PK KQG I
Sbjct: 227 TAGCLLVAKTRFAATALTGSF----RHRSARKI-----------YWALVAGVPKPKQGRI 271
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
L+K ++ + + I+ G E + A+T Y V+ +W+ L+P+T R HQL
Sbjct: 272 STYLAK---EESEEDSIMRIAAHGDEGASHAVTYYAVVETSAQKLAWVSLKPVTGRTHQL 328
Query: 379 RVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSK 438
R H A + IVGD KY F W+ P GL +
Sbjct: 329 RAHMAH-IDHAIVGDPKY--FNKENWQL------------------PGGLQKR------- 360
Query: 439 VPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P P G ++ A +P HM SWNL+
Sbjct: 361 ---LHLLARRI----VIP----HPRG-GVIDVTAPLPPHMLQSWNLLG 396
>gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo]
Length = 710
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 138/288 (47%), Gaps = 57/288 (19%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSM-DAL--AAAALSYDYNEGPKLVHRLDR 257
LR+ + Y++ ++VLNKP +P+ G V N + D L A L E L HRLD+
Sbjct: 440 LRQRIVYQNEELVVLNKPYGLPVHGGPGVKNCIADVLPILAKMLMNMKAEPLHLCHRLDK 499
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++GL+++ R++E + LF K++ + K YWA+ +GSP +GI
Sbjct: 500 ETTGLMVLARSREVADRIRLLF----KTRQVEKI-----------YWAISVGSPDPAEGI 544
Query: 318 I-----------HAPLSKVLL--------DDGKTERIILAQNSGLEASQEAMTEYRVLGP 358
+ H P K+ L +DGK +I +N+ + A+T YRVL
Sbjct: 545 VEIPMVEREVQSHQPHYKMTLAPNYRMSPEDGKVLKIRKNRNA-----ENAVTRYRVLAT 599
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIE----- 413
+ CS +EL+P+T KHQLRVH A LG PI+GD+KY + +++P + ++
Sbjct: 600 S-SACSLLELQPITGVKHQLRVHLAYGLGCPILGDHKYSHWSKLAPQKLPEITLKRLKLQ 658
Query: 414 -------PTSGKPYKLRRPDGLDVQKGSVLSKVP--LLHLHCRELKSD 452
P Y+L P G K + L P H R+L+ D
Sbjct: 659 QSKSRHLPLHLHAYRLSLPLGTGGSKQTDLVCEPPSFFHRTLRQLELD 706
>gi|46202662|ref|ZP_00208608.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 227
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 111/201 (55%), Gaps = 28/201 (13%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+D + R V YRD A+L+++KP + + P L L + + P+L HRLDR
Sbjct: 3 LDLVAR-VLYRDPAVLIIDKPAGLMVHAG-PKGGEHLGLFLDQLRFGLAQSPELAHRLDR 60
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG L++GRT+++++ L LF+ K+ YWA+V+G P+E QG+
Sbjct: 61 ETSGCLVLGRTRKALAGLGDLFAKGLADKT---------------YWAVVVGKPREDQGV 105
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKH 376
I L K + K + +GL ++T++R+LG +G SW+E RPLT R H
Sbjct: 106 IDYALKK---REKKFGWRMEVDRNGL----ASVTQWRLLG--TDGRLSWLECRPLTGRTH 156
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q+R HCA A+G P+VGD YG
Sbjct: 157 QIRAHCA-AIGHPLVGDAIYG 176
>gi|218530900|ref|YP_002421716.1| pseudouridine synthase [Methylobacterium extorquens CM4]
gi|218523203|gb|ACK83788.1| pseudouridine synthase [Methylobacterium extorquens CM4]
Length = 239
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 107/195 (54%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
YRD+ +LV++KP +P+ KG + + +DAL + P+ HRLDR++SG
Sbjct: 22 YRDALMLVIDKPAGLPVHPGPKGGPTLTDHLDAL-----RFGLPRRPEAAHRLDRDTSGC 76
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L++GR ++++ L LF+D K+ YWALV G P+ +G I PL
Sbjct: 77 LVLGRHAKALARLNRLFADGRVDKT---------------YWALVEGGPEAMEGRIDLPL 121
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
+K DD ++ + A ++T YRVLG G SW+EL+P+T R HQLRVHC
Sbjct: 122 AKRS-DDPRSWWMKTD-----PAGAPSLTLYRVLG-QSEGLSWLELKPVTGRTHQLRVHC 174
Query: 383 AEALGTPIVGDYKYG 397
A A+G PI GD YG
Sbjct: 175 A-AMGWPIRGDAIYG 188
>gi|347758850|ref|YP_004866412.1| RluA family pseudouridine synthase protein [Micavibrio
aeruginosavorus ARL-13]
gi|347591368|gb|AEP10410.1| pseudouridine synthase, RluA family protein [Micavibrio
aeruginosavorus ARL-13]
Length = 362
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 134/293 (45%), Gaps = 57/293 (19%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W+K Y ++ +++Q KG ++++ ++KT+ + G + L
Sbjct: 47 WLKKYAPDLPYALVQKLMRKGQIRVDGG----------------RVKTDTRLNAGQTVRL 90
Query: 171 PVSMVEGRISKRYDTIPSGTLN----PNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGH 226
P + T +G + P+ + D +R +V Y D ++ LNKP + ++G
Sbjct: 91 PPAT----------TASAGKTDIWFRPHPGDADLIRSMVIYDDGEVIALNKPAGIAVQGG 140
Query: 227 LPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSK 286
+ + +D L D + PKL HRLDR++SG+LL+ R +E+ L F N K
Sbjct: 141 MKIARHIDGLLEHLADRDGVK-PKLCHRLDRDTSGVLLLARDRETAKRLGRAFEGRNIRK 199
Query: 287 SLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG--KTERIILAQNSGLE 344
YWAL +P+ G+I APL K +G K I+ A+N
Sbjct: 200 Y---------------YWALTAPAPQMNDGVIDAPLIK---GEGPYKDMMIVDAENGKF- 240
Query: 345 ASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ TE++V+ +++ P T R HQ+RVH AE G P++GD KYG
Sbjct: 241 ----SRTEFQVIERAGPAAAFVMFWPRTGRTHQIRVHAAEG-GFPLIGDEKYG 288
>gi|375006357|ref|YP_004975141.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
gi|357427615|emb|CBS90560.1| Pseudouridine synthase [Azospirillum lipoferum 4B]
Length = 235
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 106/200 (53%), Gaps = 22/200 (11%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D LR V ++D V++KP + + + + ++ L L E PKL HRLDR+
Sbjct: 8 DSLRARVLHQDELCFVIDKPAGLAVHKAGRITDHLE-LYLPFLGEPDGEPPKLAHRLDRD 66
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
++G L++GRT ++ +F+ + K+ YWA+ G P + G+I
Sbjct: 67 TAGCLILGRTPWALKRFGQMFAAGHVEKT---------------YWAVADGIPDAESGVI 111
Query: 319 HAPLSKVLLDDG-KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
PL K + ++ IL +G Q A+TEYRVLG +G SW+ELRP T R HQ
Sbjct: 112 DLPLLKRIEPGASRSSWTILPDPAG----QPAVTEYRVLGTGADGRSWLELRPRTGRTHQ 167
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVHCA A+G P+VG+ YG
Sbjct: 168 IRVHCA-AIGCPLVGEPFYG 186
>gi|91977597|ref|YP_570256.1| pseudouridine synthase RluD [Rhodopseudomonas palustris BisB5]
gi|91684053|gb|ABE40355.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris BisB5]
Length = 444
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 133/288 (46%), Gaps = 59/288 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+ L+ + Y D+ +LVLNKP + ++G +D L + + P+LVHR+D+
Sbjct: 200 LQALKEMTLYEDADVLVLNKPLGLAVQGGSGTTRHID-LMLEVMRDSKGQKPRLVHRIDK 258
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G LL+ +T+ + + LT F +S+S K YWALV G PK KQG
Sbjct: 259 ETAGCLLVAKTRFAATALTGSF----RSRSARKI-----------YWALVAGVPKPKQGR 303
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K D+ + + I+ G + + A+T Y V+ +W+ L+P+T R HQ
Sbjct: 304 ISTYLAK---DESEDDSIMRVAAHGDDGASHAVTYYAVVETSATKLAWVSLKPVTGRTHQ 360
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H A +G I+GD KY F WK P GL +
Sbjct: 361 LRAHMAH-IGHAIIGDPKY--FNIENWKL------------------PGGLQNR------ 393
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
LHL R + + P P G ++ A +P HM SWNL+
Sbjct: 394 ----LHLLARRI----VIP----HPRG-GVIDVSAPLPPHMLQSWNLL 428
>gi|407783138|ref|ZP_11130343.1| 23S rRNA pseudouridylate synthase [Oceanibaculum indicum P24]
gi|407203609|gb|EKE73595.1| 23S rRNA pseudouridylate synthase [Oceanibaculum indicum P24]
Length = 328
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 62/286 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
LR V YRD +L +NKP + ++G + +DAL A L++D E P+LVHRLD+++S
Sbjct: 92 LRDAVLYRDDEVLAINKPAGLAVQGGTGMTTHIDALLDA-LTFDAKERPRLVHRLDKDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+LL+ RT + LT F ++K K YWA+ G PK ++G I
Sbjct: 151 GVLLLARTAAAARWLTAAF----RAKDAEKL-----------YWAITAGIPKPREGRIDL 195
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
P++K L + E++ + + G + ++T++ V+ + +++ +RP+T R HQLRV
Sbjct: 196 PIAK--LPGKRGEKMDIDEEEG----KRSITDFMVVEAVGKQAAFVAMRPVTGRTHQLRV 249
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
H +A+GTPI GD KYG L DGL +
Sbjct: 250 HM-QAIGTPIQGDGKYGGQA--------------------ALLAGDGLSRK--------- 279
Query: 441 LLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R++ TL +P+G L A +P HM SW
Sbjct: 280 -LHLHARQI-------TL-KRPNG-KTLTVTAPLPPHMAQSWAFFG 315
>gi|339320094|ref|YP_004679789.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Midichloria mitochondrii IricVA]
gi|338226219|gb|AEI89103.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Midichloria mitochondrii IricVA]
Length = 319
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 132/262 (50%), Gaps = 33/262 (12%)
Query: 136 ECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNA 195
+ A G V+ ++K KIK N+ + A I L + + ++ + N A
Sbjct: 36 KLARTGQIRVDSKRVKASDKIKFNQEIRFPALITLKPQIKKSILTSK---------NDYA 86
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
++ + + Y +S +LVLNKP + ++G + S+D +A+ L +D E PKLVHR+
Sbjct: 87 KLVEEITANITYINSHVLVLNKPAGLAVQGGNGIEISVDHIASE-LKFDAKEKPKLVHRI 145
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+E+SG+L+M RT ++ + +F + + K +Y A+V G PKE +
Sbjct: 146 DKETSGILIMARTIKAAQEIADIFQNRDIDK---------------KYLAIVQGKPKELK 190
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
+I PL K D G + +G ++A+T YRVL + +E+ P+T RK
Sbjct: 191 EVIDIPLEKK--DSGAGFENMAPSKNG----KQAITRYRVLAHN-ERAALLEVIPVTGRK 243
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQ+R H A +G PI+ D KY
Sbjct: 244 HQIRAHLA-TIGCPIISDKKYN 264
>gi|319407393|emb|CBI81044.1| ribosomal large subunit pseudouridine synthase C [Bartonella sp.
1-1C]
Length = 327
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 160/376 (42%), Gaps = 78/376 (20%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K Y+ +V +Q G ++++ ++K + + G I +
Sbjct: 21 WFKVYYPDVGFGYLQKLLRSGQIRVDGG----------------RVKNDMRLVVGQSIRV 64
Query: 171 PVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH 230
P +++ S + I + D I L+ ++ Y DS I V NKP + ++G +
Sbjct: 65 PPLLIDKEDS--FSVINKIVCGRDDDII--LKDMLLYEDSKIFVFNKPAGLAVQGGSGLT 120
Query: 231 NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+D + + E P+LVHR+DRE+SG+L++ R++ + LT F K+
Sbjct: 121 RHIDNMLEVWRNKK-GEKPRLVHRIDRETSGILVVARSRGAAQALTAAFRTRETKKT--- 176
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
YWALV G P++KQ I + + + G R+ + S A+
Sbjct: 177 ------------YWALVRGVPRKKQDKISTWMVREITAQGDKMRVCERRQPD---SNHAV 221
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ YRVL SW+E+ P T R HQLRVH A + PI+GD KY +F W +PR
Sbjct: 222 SYYRVLDTRGKALSWLEMEPYTGRTHQLRVHAA-YINHPIIGDSKY-FFSDSNW-DLPR- 277
Query: 411 DIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRF 470
G+ + LHLH R ++ + P G +L
Sbjct: 278 ----------------GMQNR----------LHLHARRIRIPH--------PSG-GVLDV 302
Query: 471 VASMPSHMKISWNLMS 486
A +P HM S+NL +
Sbjct: 303 TAPLPPHMVQSFNLFA 318
>gi|399077421|ref|ZP_10752399.1| pseudouridine synthase, RluA family [Caulobacter sp. AP07]
gi|398035490|gb|EJL28731.1| pseudouridine synthase, RluA family [Caulobacter sp. AP07]
Length = 329
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 113/213 (53%), Gaps = 27/213 (12%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
P+ L + +I + + LV Y D +L LNKP + ++G + +D L +A +
Sbjct: 73 PNEKLALSKRDIAFAKSLVLYEDEEVLALNKPAGLAVQGGTKTTHHIDKLLSA-----WG 127
Query: 247 EG---PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
EG PKLVHRLDR++SG+LL+G+T + + L+ F+ K+ Y
Sbjct: 128 EGVNRPKLVHRLDRDTSGVLLLGKTPGAAAKLSGAFARRRAQKT---------------Y 172
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
WA+V G+P +G+I L+K + G E ++ A+ +A Q A TE+ +
Sbjct: 173 WAIVAGNPHPTEGVIELHLAKRGV--GDRELVVPAEPKDPDA-QPAETEFVSISRAGPRV 229
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+W+ LRP T R HQLR H +A+G PI+GD KY
Sbjct: 230 TWMALRPHTGRTHQLRAHM-KAIGHPILGDPKY 261
>gi|209965860|ref|YP_002298775.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209959326|gb|ACI99962.1| RNA pseudouridine synthase, putative [Rhodospirillum centenum SW]
Length = 239
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 100/197 (50%), Gaps = 24/197 (12%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAA--AALSYDYNEGPKLVHRLDRESSGLLL 264
YRD +L+L+KP + + G + D L L + P L HRLDR++SG L+
Sbjct: 12 YRDGLMLILDKPAGIAVHGGPGSRHGADNLERYFEHLRFGLPRPPALAHRLDRDTSGCLV 71
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+GR +++ L LF D K+ YWA+V G P+ G I L K
Sbjct: 72 LGRHPKALRKLGLLFQDGRIGKT---------------YWAVVRGGPEGDAGTIDKALLK 116
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLG----PMINGCSWIELRPLTCRKHQLRV 380
D + ++A G +QEA+T++RV+G P I +W+EL P T R HQ+R
Sbjct: 117 --RTDARRGWKMIALPPGTPEAQEAVTDWRVMGRGSLPKIGDLAWLELHPRTGRTHQIRA 174
Query: 381 HCAEALGTPIVGDYKYG 397
HCA A+G P++GD YG
Sbjct: 175 HCA-AMGCPVLGDPVYG 190
>gi|319404393|emb|CBI77996.1| ribosomal large subunit pseudouridine synthase C [Bartonella
rochalimae ATCC BAA-1498]
Length = 327
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 159/377 (42%), Gaps = 80/377 (21%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFL 170
W K Y+ +V +Q G ++++ ++K + + G I +
Sbjct: 21 WFKVYYPDVGFGYLQKLLRSGQIRVDGG----------------RVKNDVRLVMGQSIRV 64
Query: 171 PVSMVEGRISKRYDTIPS-GTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
P +++ + D+ P + D L+ ++ Y DS I V NKP + ++G +
Sbjct: 65 PPLLID-----KEDSFPVINKIVCGQDNDIILKDMLLYEDSKIFVFNKPAGLAVQGGSGL 119
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
+D++ + E P+LVHR+DRE+SG+L++ R++ + LT F K+
Sbjct: 120 TRHVDSMLEVWRNKK-GEKPRLVHRIDRETSGVLVVARSRGAAQALTAAFRTRETKKT-- 176
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
YWALV G P++KQ I + + + G R+ + S A
Sbjct: 177 -------------YWALVRGVPRKKQDKISTWMVREITAQGDKMRVCERRQPD---SNHA 220
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR 409
++ YRVL SW+E+ P T R HQLRVH A + PI+GD KY +F W
Sbjct: 221 VSYYRVLDTRGKALSWLEMEPYTGRTHQLRVHAA-YINHPIIGDSKY-FFSDSNWDL--- 275
Query: 410 VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLR 469
P G+ + LHLH R ++ + P G +L
Sbjct: 276 ---------------PGGMQNR----------LHLHARRIRIPH--------PSG-GILD 301
Query: 470 FVASMPSHMKISWNLMS 486
A +P HM S+NL +
Sbjct: 302 VTAPLPPHMVQSFNLFA 318
>gi|90421737|ref|YP_530107.1| pseudouridine synthase [Rhodopseudomonas palustris BisB18]
gi|90103751|gb|ABD85788.1| pseudouridine synthase [Rhodopseudomonas palustris BisB18]
Length = 240
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 34/215 (15%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALS 242
P T P + L R++ YRD +LV++KP +P+ KG + +S + L
Sbjct: 6 PEPTAMPELTAEEILARVL-YRDGLMLVIDKPAGLPVHRGPKGGANLESSFEFL-----R 59
Query: 243 YDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR 302
Y P L HRLDR++SG L++GR +++ + L LF SK+
Sbjct: 60 YGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGRISKT--------------- 104
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
YWA+V G P E +G I P+ ++ + G ++I Q A T++RVLG +G
Sbjct: 105 YWAVVEGGPIEDEGTIELPIGRLNAERGWWQKID-------PEGQPATTKWRVLG-RGDG 156
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+W+ L+P+T R HQLRVH A A+G PIVGD YG
Sbjct: 157 LTWLALQPVTGRTHQLRVHSA-AMGWPIVGDNIYG 190
>gi|217976287|ref|YP_002360434.1| RluA family pseudouridine synthase [Methylocella silvestris BL2]
gi|217501663|gb|ACK49072.1| pseudouridine synthase, RluA family [Methylocella silvestris BL2]
Length = 349
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 134/258 (51%), Gaps = 34/258 (13%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISK----RYDTIPSGTLNPNADEIDY-LRRLVKYRDS 210
++T +V GAR+ + +G+ + + P + ++E LR+++ + D
Sbjct: 37 VRTGQVRVDGARVKTATRLAQGQNVRVPPLNLEAAPEAPVFRISEEDQRDLRQMILFEDK 96
Query: 211 AILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKE 270
++VLNKP + ++G + +D + A+ L + + P LVHRLDR++SG+LL+ +T++
Sbjct: 97 DLMVLNKPYGLAVQGGSGMRRHIDGMLAS-LPNERGDRPVLVHRLDRDTSGVLLIAKTRK 155
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
+ L +F +S+ K YWALV G PK QG I L+K D
Sbjct: 156 MAADLGEIF----RSRQAQKI-----------YWALVEGVPKPAQGKISLFLAKGEGMDA 200
Query: 331 K-----------TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
+ E++ +A++ G E +Q ++T Y + +W+ ++P+T R HQLR
Sbjct: 201 RGPRRSDEERASMEKMRVAKH-GDEDAQHSVTYYATVDTFSPRAAWLSMKPITGRTHQLR 259
Query: 380 VHCAEALGTPIVGDYKYG 397
H AEA+G PI+GD KYG
Sbjct: 260 AH-AEAIGHPIIGDPKYG 276
>gi|426400547|ref|YP_007019519.1| RluA family pseudouridine synthase [Candidatus Endolissoclinum
patella L2]
gi|425857215|gb|AFX98251.1| pseudouridine synthase, RluA family protein [Candidatus
Endolissoclinum patella L2]
Length = 348
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 108/193 (55%), Gaps = 23/193 (11%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ YRD I+V+NKP + ++G + +D A +L ++ +E P+LVHRLD+ +SG+L+
Sbjct: 112 ILYRDKEIIVINKPAGLAVQGGSGLTKHVDG-ALDSLRFEASERPRLVHRLDKHTSGVLI 170
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ R + S L F ++KS K Y ALVIG PK G I+ P++K
Sbjct: 171 LARQQSSARRLINAF----RAKSAVKI-----------YLALVIGEPKPAIGQINLPIAK 215
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
V + +E++++ +G + A+T Y L + + + L P+T R HQLRVH A
Sbjct: 216 V--ANKVSEKMMVDYENG----KHALTRYSTLEKLSCHITLVALFPVTGRTHQLRVHMA- 268
Query: 385 ALGTPIVGDYKYG 397
+GTPI+GD KYG
Sbjct: 269 GIGTPILGDSKYG 281
>gi|407783425|ref|ZP_11130626.1| ribosomal large subunit pseudouridine synthase D [Oceanibaculum
indicum P24]
gi|407202150|gb|EKE72145.1| ribosomal large subunit pseudouridine synthase D [Oceanibaculum
indicum P24]
Length = 222
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 33/197 (16%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V +RD +L+++KP +P KG + DAL + + P L HRLDR++S
Sbjct: 5 VLHRDGLMLIIDKPAGLPCHAGPKGGPNLEAQFDAL-----RFGLPKPPSLAHRLDRDTS 59
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR +++++ L LFS K+ YWA+V G P+E+ G I
Sbjct: 60 GCLVLGRHRKALAKLGRLFSSGGIDKT---------------YWAVVAGGPQEEAGHIDR 104
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PLSK+ + K+ ++ G Q + T++RVLG G W+EL+PLT R HQLR+
Sbjct: 105 PLSKL---NKKSGWKMVVDPQG----QPSQTDFRVLG-RSEGICWLELKPLTGRTHQLRI 156
Query: 381 HCAEALGTPIVGDYKYG 397
HC+ ++G PI+GD YG
Sbjct: 157 HCS-SMGWPILGDPVYG 172
>gi|384250084|gb|EIE23564.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 508
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 60/289 (20%)
Query: 151 KPIRKIKTNEVMEPGARIFLPVSMVE-------GRISKR------YDTIPSGTLNPNADE 197
K ++++ + ++ GAR+ +P + GR S + +P A
Sbjct: 102 KGLKRVAASTLLPEGARLLIPKATSPDHEQPGLGRSSAAELLESDAEVVPKRIRQLEAKL 161
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++++R V + D+ +LVLNKP +P++G +H S+D+L L E P+LVHRLDR
Sbjct: 162 AEHVQRRVLHSDAELLVLNKPAGLPVQGGDGIHVSLDSL-LPHLRLGSTETPRLVHRLDR 220
Query: 258 ESSGLLLMGRTKESVSLLTWLFSD-----VNKSKSLSKAWNDACEAMYQRYWALVIGSP- 311
+SG L++ RT ++ + L+ F + ++A+ A ++ + Y A+V P
Sbjct: 221 NTSGALVVARTVDAAAWLSAAFRQPAEGLQTAAAGQARAFRGA-PSIEKHYQAIVEDGPG 279
Query: 312 -KEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+E +G I L D A Q A+T+Y VLG G +W+ L+P
Sbjct: 280 LQEDRGFIGGRLPGPGGRD---------------AGQRALTKYEVLGRSAEGFAWLALQP 324
Query: 371 LT----------C------------RKHQLRVHCAEALGTPIVGDYKYG 397
+T C RKHQLR HCAE LG P+VGD +YG
Sbjct: 325 VTGMLLADAPGVCRCCSVQSPDTGRRKHQLRKHCAE-LGAPVVGDGRYG 372
>gi|288960501|ref|YP_003450841.1| ribosomal large subunit pseudouridine synthase D [Azospirillum sp.
B510]
gi|288912809|dbj|BAI74297.1| ribosomal large subunit pseudouridine synthase D [Azospirillum sp.
B510]
Length = 226
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 24/193 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ YRD +L+L+KP +P+ P AL + + + P L HRLDR++SG L+
Sbjct: 10 ILYRDGLMLILDKPAGLPVHAG-PAGGPNLERHFDALRFGFPKPPSLAHRLDRDTSGCLI 68
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+GR +++ + LF + K+ YWA+V G P + G I PL+K
Sbjct: 69 LGRHAKALRKIGILFQNGKVDKT---------------YWAVVAGGPPQDSGRIELPLAK 113
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
+ G RI+ G Q A+T+Y V G +G +W+EL P T R HQ+RVHCA
Sbjct: 114 ISNKTGGW-RIV-----GSPDGQSAVTDYVVRG-QADGLTWLELTPHTGRTHQIRVHCA- 165
Query: 385 ALGTPIVGDYKYG 397
++G P++GD +YG
Sbjct: 166 SIGCPLIGDPQYG 178
>gi|144898737|emb|CAM75601.1| Pseudouridylate synthase [Magnetospirillum gryphiswaldense MSR-1]
Length = 226
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 106/204 (51%), Gaps = 35/204 (17%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH---NSMDALAA--AALSYDYNEGPKLVH 253
D ++ + ++D ++VL+KP L VH NS D L AL + ++ P+L H
Sbjct: 4 DEIKARILFKDQDVIVLDKPAG------LAVHAGPNSPDHLELYLDALKFGWSMAPRLAH 57
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG LL+GR +S+ L +F K+ YW +V G+P E
Sbjct: 58 RLDRDTSGCLLLGRHDKSIKRLGKMFMQGRVEKA---------------YWTVVHGTPPE 102
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
G I AP+ KV G RII+ A Q A+T +RVLG +G SWIE PLT
Sbjct: 103 DTGEISAPIHKVTGKGG--WRIIIDA-----AGQPAVTRWRVLG-RGDGLSWIECTPLTG 154
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+RVH + LG P+ GD YG
Sbjct: 155 RTHQIRVH-MKHLGCPVRGDVYYG 177
>gi|308813053|ref|XP_003083833.1| pseudouridine synthase family protein (ISS) [Ostreococcus tauri]
gi|116055715|emb|CAL57800.1| pseudouridine synthase family protein (ISS) [Ostreococcus tauri]
Length = 476
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 176/391 (45%), Gaps = 78/391 (19%)
Query: 142 DSFVEQGQM---KPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEI 198
D V G++ + +R+ + PG + +P G + D G N +D
Sbjct: 90 DGRVPDGRLESARGLRRASRARTLTPGEFLCVP-DGASGYWASWSDADQGGGENIMSDRD 148
Query: 199 ----DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHR 254
+ LR V+YRD ++V++KP G V + + ++ L + E P +VHR
Sbjct: 149 WALGEGLRARVRYRDEHVVVVDKP-----SGLATVPGAGNEVSVYDLRHTL-EAPYVVHR 202
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSK---------SLSKAWNDACEAMYQRYWA 305
LDR++SG+L++ RT + + L +F +K+ L KA + + YWA
Sbjct: 203 LDRDTSGVLVLARTSFAANKLNAMFQRKSKTDFAAVLRAEMELGKAPRYDDSEIQRTYWA 262
Query: 306 LVIGSPKEK--QGIIHAPLSKVLLDDGKTE--------RIILAQNSGL------------ 343
+ P +G I APL+ DG+ + R+ QN +
Sbjct: 263 ICANPPPRGTLEGWIDAPLADTDEGDGRGDNVRLVGGWRVYDVQNGDVIVGAGEQEFARV 322
Query: 344 -----EASQEAMTEYRVLGPM-INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+S+ A T ++VL +G + +EL P+T RKHQLRVH ++AL +PIVGDYKYG
Sbjct: 323 NKEENVSSRAATTRFKVLASAGDDGPTLLELVPITGRKHQLRVHLSKALSSPIVGDYKYG 382
Query: 398 WFVHR-----RWKQMPRVDIEPTSGKPYK-------LRRPDGLDVQKGSVLSKVPLLHLH 445
+ + R+ ++ R++ E S LRR D +G+ SK+P LHLH
Sbjct: 383 FTDKQKPWRARFAEIERLERERASSAAADRDDVWRALRR----DSLRGA--SKLP-LHLH 435
Query: 446 CRELKSDNLFPTLSSKPDGPDLLRFVASMPS 476
+K S P+G +R VA PS
Sbjct: 436 AHSIK--------FSHPEGDRSVRVVAEPPS 458
>gi|163852141|ref|YP_001640184.1| pseudouridine synthase [Methylobacterium extorquens PA1]
gi|163663746|gb|ABY31113.1| pseudouridine synthase [Methylobacterium extorquens PA1]
Length = 239
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
YRD+ +LV++KP +P+ KG + + +DAL + P+ HRLDR++SG
Sbjct: 22 YRDALMLVIDKPAGLPVHPGPKGGPTLTDHLDAL-----RFGLPRRPEATHRLDRDTSGC 76
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L++GR ++++ L LF+D K+ YWALV G P+ +G I PL
Sbjct: 77 LVLGRHAKALARLNRLFADGKVDKT---------------YWALVEGGPEAMEGRIDLPL 121
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
+K DD ++ + A ++T YRVLG G W+EL+P+T R HQLRVHC
Sbjct: 122 AK-RSDDPRSWWMKTD-----PAGAPSLTFYRVLG-RTEGLCWLELKPVTGRTHQLRVHC 174
Query: 383 AEALGTPIVGDYKYG 397
A A+G PI GD YG
Sbjct: 175 A-AMGWPIRGDAIYG 188
>gi|167645622|ref|YP_001683285.1| RluA family pseudouridine synthase [Caulobacter sp. K31]
gi|167348052|gb|ABZ70787.1| pseudouridine synthase, RluA family [Caulobacter sp. K31]
Length = 329
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 108/203 (53%), Gaps = 27/203 (13%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG---PKLVH 253
+I + + LV Y D +L LNKP + ++G + +D L +A + EG PKLVH
Sbjct: 83 DIAFAKSLVLYEDEEVLALNKPAGLAVQGGTKTTHHIDKLLSA-----WGEGVNRPKLVH 137
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG+LL+G+T + + L+ F+ K+ YWA+V G+P
Sbjct: 138 RLDRDTSGVLLLGKTPAAAARLSGSFAKRKAQKT---------------YWAIVAGNPHP 182
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
+G+I L+K + D E ++ A+ + Q A TE+ + +W+ LRP T
Sbjct: 183 TEGVIELHLAKRGVGD--RELVVPAEPKDPDG-QPAETEFVSISRAGPRVTWMALRPHTG 239
Query: 374 RKHQLRVHCAEALGTPIVGDYKY 396
R HQLR H +A+G PI+GD KY
Sbjct: 240 RTHQLRAHM-KAIGHPILGDPKY 261
>gi|337739499|ref|YP_004631227.1| RNA pseudouridine synthase [Oligotropha carboxidovorans OM5]
gi|386028517|ref|YP_005949292.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM4]
gi|336093585|gb|AEI01411.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM4]
gi|336097163|gb|AEI04986.1| putative RNA pseudouridine synthase [Oligotropha carboxidovorans
OM5]
Length = 263
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 144/324 (44%), Gaps = 89/324 (27%)
Query: 174 MVEGRISKRYDTIPS-----GTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL----K 224
M+ G +KR + T P A E ++ V +RD +LV++KP + + K
Sbjct: 1 MLPGSATKRKSVVAHEYAVMDTPQPTAQE---MQARVLHRDGLMLVIDKPAGIAVHRGPK 57
Query: 225 GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNK 284
G + S DAL Y P L HRLDR++SG L++GR +++ + L LF
Sbjct: 58 GGPNLEASFDAL-----RYGLPRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGKI 112
Query: 285 SKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLE 344
K+ YWA+V G P E +G I PL ++ + G ++ +GL
Sbjct: 113 GKT---------------YWAVVEGGPAEDEGEIDIPLGRLNAERGWWQK---PDPNGLP 154
Query: 345 ASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRW 404
+ + + VLG NG SW+ L PLT R HQLRVHCA A+G PIVGD YG
Sbjct: 155 SK----SRWSVLG-RNNGLSWLALEPLTGRTHQLRVHCA-AMGFPIVGDNIYG------- 201
Query: 405 KQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDG 464
PR EP+ LHLH RE+ + P +KP
Sbjct: 202 -NGPRFG-EPS--------------------------LHLHAREI----VVPLSRNKPP- 228
Query: 465 PDLLRFVASMPSHMK-----ISWN 483
+R +A +P+H++ WN
Sbjct: 229 ---VRVIAPVPAHLQERLQACGWN 249
>gi|323138142|ref|ZP_08073215.1| pseudouridine synthase, RluA family [Methylocystis sp. ATCC 49242]
gi|322396604|gb|EFX99132.1| pseudouridine synthase, RluA family [Methylocystis sp. ATCC 49242]
Length = 351
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 155/339 (45%), Gaps = 62/339 (18%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++++T+ +E G ++ +P +E + + ++ L+ + + D +L
Sbjct: 54 KRVETSTRLEEGQKVRVPPLRIEAPEA-------PAVKRASPEDAQALKAMTLFEDKDVL 106
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNKP + +G +D + + D P LVHRLDR++SG+LL+ +T+ +
Sbjct: 107 VLNKPWGLATQGGSGQKRHVDGMLESLARGDSR--PVLVHRLDRDTSGVLLVAKTRRMAA 164
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH------APLSKVLL 327
L +F +S+ K YWALV G PK QG + A + K
Sbjct: 165 DLGEIF----RSRQAKKI-----------YWALVEGVPKPAQGRVSLYLAKGAGMEKARG 209
Query: 328 DDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALG 387
E++ +A++ +A Q ++T Y ++ + C+W+ ++PLT R HQLR H AEA+G
Sbjct: 210 GGRDLEKMRVAKHGEADA-QHSLTYYAIVDKVAPRCAWLSMKPLTGRTHQLRAH-AEAIG 267
Query: 388 TPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCR 447
PI GD KYG + P D+ P + PDGL+ + LHL R
Sbjct: 268 HPIFGDPKYG--------RRPEDDVRRRD--PLRA-MPDGLERK----------LHLLAR 306
Query: 448 ELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
L + P P G L A +P HM+ SW L
Sbjct: 307 RL----VLP----HPRG-GTLDVTAPLPPHMQKSWELFG 336
>gi|359407956|ref|ZP_09200429.1| pseudouridine synthase, RluA family [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677022|gb|EHI49370.1| pseudouridine synthase, RluA family [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 319
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 130/252 (51%), Gaps = 49/252 (19%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID------YLRRLVKYR 208
K K N + PG ++ P ++ T + +P+A ++D +L ++
Sbjct: 46 KAKANTRLLPGQQLTYPEHLLT--------TAAGSSPSPSAPQMDQQAAYSHLSNMLVAE 97
Query: 209 DSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRT 268
+ L LNKP + ++G +D L AA + PKLVHRLD+++SGLLL+ R
Sbjct: 98 HTDWLALNKPAGLAVQGGSGTSRHIDGLVRAAFP---GQSPKLVHRLDKDTSGLLLLARH 154
Query: 269 KESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLD 328
+ L F+ K+++KA Y ALVIG P +G I+APL K
Sbjct: 155 DRAARELAAGFA----QKTINKA-----------YLALVIGDPG-AEGRINAPLRKA--- 195
Query: 329 DGK-TERIILAQNSGLEASQEAMTEYRVL---GPMINGCSWIELRPLTCRKHQLRVHCAE 384
GK E++I+ Q++G Q A+T++ L GP+ S + LRP+T R HQLRVH A
Sbjct: 196 GGKGAEKMIVDQDTG----QTAVTDFLRLDKAGPV----SLLALRPVTGRTHQLRVHMA- 246
Query: 385 ALGTPIVGDYKY 396
A+GTPI+GD KY
Sbjct: 247 AVGTPILGDGKY 258
>gi|209883418|ref|YP_002287275.1| pseudouridine synthase RluD [Oligotropha carboxidovorans OM5]
gi|209871614|gb|ACI91410.1| pseudouridine synthase, RluD [Oligotropha carboxidovorans OM5]
Length = 244
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 137/303 (45%), Gaps = 84/303 (27%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDY 245
T P A E ++ V +RD +LV++KP + + KG + S DAL Y
Sbjct: 3 TPQPTAQE---MQARVLHRDGLMLVIDKPAGIAVHRGPKGGPNLEASFDAL-----RYGL 54
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
P L HRLDR++SG L++GR +++ + L LF K+ YWA
Sbjct: 55 PRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGKIGKT---------------YWA 99
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
+V G P E +G I PL ++ + G ++ +GL + + + VLG NG SW
Sbjct: 100 VVEGGPAEDEGEIDIPLGRLNAERGWWQK---PDPNGLPSK----SRWSVLG-RNNGLSW 151
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRP 425
+ L PLT R HQLRVHCA A+G PIVGD YG PR EP+
Sbjct: 152 LALEPLTGRTHQLRVHCA-AMGFPIVGDNIYG--------NGPRFG-EPS---------- 191
Query: 426 DGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMK-----I 480
LHLH RE+ + P +KP +R +A +P+H++
Sbjct: 192 ----------------LHLHAREI----VVPLSRNKPP----VRVIAPVPAHLQERLQAC 227
Query: 481 SWN 483
WN
Sbjct: 228 GWN 230
>gi|316933564|ref|YP_004108546.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
DX-1]
gi|315601278|gb|ADU43813.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris
DX-1]
Length = 455
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 132/289 (45%), Gaps = 59/289 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+ LR + + D+ +LVLNKP + ++G +D + L + P+LVHR+D+
Sbjct: 211 LQALRDMTLFEDADVLVLNKPAGLAVQGGSGTTRHIDQMLEV-LRDSKGQKPRLVHRIDK 269
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G LL+ +T+ + + LT F + +S K YWALV G PK KQG
Sbjct: 270 ETAGCLLVAKTRFAATALTGSF----RHRSARKI-----------YWALVAGVPKPKQGR 314
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K D+ + + I+ G + + A+T Y V+ +W+ L+P+T R HQ
Sbjct: 315 ISTYLAK---DESEEDSIMRVAKHGDDGASHAVTYYAVVETSGQKLAWVSLKPVTGRTHQ 371
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H A +G IVGD KY F W+ P GL +
Sbjct: 372 LRAHMAH-IGHAIVGDPKY--FNIENWQL------------------PGGLQNR------ 404
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P P G ++ A +P HM SWNL+
Sbjct: 405 ----LHLLARRI----VIP----HPRG-GVIDVSAPLPPHMLQSWNLLG 440
>gi|389878892|ref|YP_006372457.1| ribosomal large subunit pseudouridine synthase D [Tistrella mobilis
KA081020-065]
gi|388529676|gb|AFK54873.1| ribosomal large subunit pseudouridine synthase D [Tistrella mobilis
KA081020-065]
Length = 289
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 25/214 (11%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+R V +RD +++++KP +P+ P L AL + Y E P L HRLDR++S
Sbjct: 6 IRARVLHRDRLVVIIDKPAGLPVHAG-PRGGPNLELYLDALRFGYKEQPSLAHRLDRDTS 64
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR + +++ L +F K YWA+ G P+ +G + A
Sbjct: 65 GCLVLGRNRRALARLGRMFQGGRVEKV---------------YWAVTDGVPEAPEGRVDA 109
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL+K G+ ++++ A Q A+T++RVLG G +WIE RP T R HQ+RV
Sbjct: 110 PLAK--RTPGRGWKMVVD-----PAGQAAVTDWRVLG-QAGGRAWIECRPRTGRTHQIRV 161
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEP 414
H A +G P+VGD Y V + R + P
Sbjct: 162 HMAH-MGCPLVGDPVYAEGVGDAFADEMRTKLGP 194
>gi|158424148|ref|YP_001525440.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
gi|158331037|dbj|BAF88522.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
Length = 384
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 134/290 (46%), Gaps = 60/290 (20%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
+ ++LR ++ + D +LVLNKP + ++G +D + A + D + P+LVHR+D
Sbjct: 140 DAEFLRSIILFEDKDVLVLNKPSGIAVQGGSGTFRHIDGMLDALRAKD-GQKPRLVHRID 198
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
++++G LL+ + + S + L F +S+ K YWALV G PK +QG
Sbjct: 199 KDTAGCLLIAKNRLSAAQLAKNF----RSREARKI-----------YWALVPGVPKPRQG 243
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I S L + ER+ +A++ G E + A+T Y V+ SW+ L+P+T R H
Sbjct: 244 RI----STYLAREEAEERMRVARH-GEEDASHAVTYYAVVEHAAQKMSWLSLKPVTGRTH 298
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVL 436
Q+R H A + PIVGD KY F W+ P GL +
Sbjct: 299 QIRAHLAH-IHHPIVGDPKY--FNIENWEL------------------PGGLQNR----- 332
Query: 437 SKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R L + P P G ++ A +P HM SW ++
Sbjct: 333 -----LHLLARRL----VIP----HPRGEGMIDVSAPLPPHMAQSWAVLG 369
>gi|86749455|ref|YP_485951.1| pseudouridine synthase RluD [Rhodopseudomonas palustris HaA2]
gi|86572483|gb|ABD07040.1| ribosomal large subunit pseudouridine synthase C [Rhodopseudomonas
palustris HaA2]
Length = 453
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 101/196 (51%), Gaps = 20/196 (10%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L+ + Y D+ +LVLNKP + ++G +D L + + P+LVHR+D+E++
Sbjct: 212 LKAMTLYEDADVLVLNKPAGLAVQGGSGTTKHID-LMLEVMRDSKGQKPRLVHRIDKETA 270
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ +T+ + + LT F + +S K YWALV G PK KQG I
Sbjct: 271 GCLLVAKTRFAATALTGSF----RHRSARKI-----------YWALVAGVPKPKQGRIST 315
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+K +D RI G E + A+T Y V+ +W+ L+P+T R HQLR
Sbjct: 316 YLAKEESEDDSIMRIA---EHGDEGASHAVTYYAVVETSAQKLAWVSLKPVTGRTHQLRA 372
Query: 381 HCAEALGTPIVGDYKY 396
H A +G IVGD KY
Sbjct: 373 HMAH-IGHAIVGDPKY 387
>gi|39936271|ref|NP_948547.1| pseudouridine synthase [Rhodopseudomonas palustris CGA009]
gi|39650126|emb|CAE28649.1| possible ribosomal large subunit pseudouridine synthase C
[Rhodopseudomonas palustris CGA009]
Length = 455
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 132/289 (45%), Gaps = 59/289 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+ L+ + + D+ +LVLNKP + ++G +D + L + P+LVHR+D+
Sbjct: 211 LQTLKAMTLFEDADVLVLNKPAGLAVQGGSGTTRHIDQMLEV-LRDSKGQKPRLVHRIDK 269
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G LL+ +T+ + + LT F + +S K YWALV G PK KQG
Sbjct: 270 ETAGCLLVAKTRFAATALTGSF----RHRSARKI-----------YWALVAGVPKPKQGR 314
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K D+ + + I+ G + + A+T Y V+ +W+ L+P+T R HQ
Sbjct: 315 ISTYLAK---DESEEDSIMRVAKHGDDGASHAVTYYAVVETSGQKLAWVSLKPVTGRTHQ 371
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H A +G IVGD KY F W+ P GL +
Sbjct: 372 LRAHMAH-IGHAIVGDPKY--FNIENWQL------------------PGGLQNR------ 404
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P P G ++ A +P HM SWNL+
Sbjct: 405 ----LHLLARRI----VIP----HPRG-GVIDVSAPLPPHMLQSWNLLG 440
>gi|402849245|ref|ZP_10897485.1| Ribosomal large subunit pseudouridine synthase C [Rhodovulum sp.
PH10]
gi|402500558|gb|EJW12230.1| Ribosomal large subunit pseudouridine synthase C [Rhodovulum sp.
PH10]
Length = 637
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 120/248 (48%), Gaps = 25/248 (10%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEG---RISKRYDTIPSGTLNP--NADEIDYLRRLVKYR 208
R ++ EV G R+ + EG R+ P+ NP +A+ +L+ +
Sbjct: 343 RIVRKGEVRVNGKRVDTKDRLEEGQSVRVPPLRLAAPAARENPERDAETRAFLKSITLLE 402
Query: 209 DSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRT 268
D ILVLNKP + ++G +D + L + P+LVHRLD+++SG LL+ +T
Sbjct: 403 DDDILVLNKPMGLAVQGGSGTKKHVDGMLEV-LRDARGQKPRLVHRLDKDTSGCLLVAKT 461
Query: 269 KESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLD 328
+ + S L F +++ K YWAL G PK KQG I L+K +
Sbjct: 462 RFAASTLAKSF----RARETRKI-----------YWALAAGVPKPKQGRISTFLAK---E 503
Query: 329 DGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGT 388
+ + E + G E + A+T Y V+ +W+ L+P+T R HQLR H A +G
Sbjct: 504 EREEESFMRIAKHGEEGAIHAVTYYAVVETAAQRLAWLSLKPVTGRTHQLRAHLAH-IGH 562
Query: 389 PIVGDYKY 396
PIVGD KY
Sbjct: 563 PIVGDPKY 570
>gi|381167871|ref|ZP_09877076.1| putative enzyme [Phaeospirillum molischianum DSM 120]
gi|380682947|emb|CCG41888.1| putative enzyme [Phaeospirillum molischianum DSM 120]
Length = 234
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 106/193 (54%), Gaps = 24/193 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
V +RD+++LV++KP + + + L AL + P+L HRLDR++SG L+
Sbjct: 10 VLHRDASVLVIDKPAGLAVHAGRAGDEHL-GLYLDALRFGLPRSPELAHRLDRDTSGCLV 68
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+GR + +++ L +F+ +K YWA+V+G P+E++G+I PL K
Sbjct: 69 LGRHRRALARLGEIFAHGEANKV---------------YWAIVVGRPREEEGLIELPLKK 113
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
G R+ + + GL ++ T +R+LG SW+E +PLT R HQ+R HCA
Sbjct: 114 REAKFGW--RMDVEERGGLPSA----TRWRLLG-GDGRLSWLECQPLTGRTHQIRAHCA- 165
Query: 385 ALGTPIVGDYKYG 397
A+G P+VGD YG
Sbjct: 166 AIGHPLVGDAIYG 178
>gi|418059138|ref|ZP_12697095.1| pseudouridine synthase [Methylobacterium extorquens DSM 13060]
gi|373567333|gb|EHP93305.1| pseudouridine synthase [Methylobacterium extorquens DSM 13060]
Length = 239
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
YRD+ +LV++KP +P+ KG + + +DAL + P+ HRLDR++SG
Sbjct: 22 YRDALMLVIDKPAGLPVHPGPKGGPTLTDHLDAL-----RFGLPRRPEAAHRLDRDTSGC 76
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L++GR ++++ L LF+D K+ YWALV G P+ +G I PL
Sbjct: 77 LVLGRHAKALARLNRLFADGKVDKT---------------YWALVEGGPEAMEGRIDLPL 121
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
+K DD ++ + A ++T YRVLG SW+EL+P+T R HQLRVHC
Sbjct: 122 AK-RSDDPRSWWMKTDP-----AGAPSLTLYRVLG-RSECLSWLELKPVTGRTHQLRVHC 174
Query: 383 AEALGTPIVGDYKYG 397
A A+G PI GD YG
Sbjct: 175 A-AMGWPIRGDAIYG 188
>gi|431806514|ref|YP_007233415.1| Ribosomal large subunit pseudouridine synthase C [Liberibacter
crescens BT-1]
gi|430800489|gb|AGA65160.1| Ribosomal large subunit pseudouridine synthase C [Liberibacter
crescens BT-1]
Length = 327
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 58/296 (19%)
Query: 191 LNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
L + D+ + L R++ Y D + V NK + ++G + MD L A + E P+
Sbjct: 83 LCESTDKDELLNRMLLYEDREVYVFNKLAGLAVQGGSGISLHMDYLLEAWRNAK-GEKPR 141
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDRE+SG+ ++ RT+ + + F + N K+ YW LV G
Sbjct: 142 LVHRLDRETSGIFVVARTRNAAQSFSEAFRNRNTEKT---------------YWLLVKGV 186
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
PK+ +G I + L K +G + G + + A++ ++V+ + W+E++P
Sbjct: 187 PKKYEGRISSWLIK---KEGIGSDYVKVAMHGEKGAGHAVSYFKVIQTVAKKFCWLEMKP 243
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDV 430
T R HQLRVH A +G PI+GD KY F++ +P P + +
Sbjct: 244 YTGRTHQLRVH-ALHIGHPIIGDTKY--FIN-----------DPNWHLPENIPKQ----- 284
Query: 431 QKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHLH R + + P G L+ A +PSHM +WNL+
Sbjct: 285 -----------LHLHARYIDIPH--------PSGGR-LQVTAPLPSHMVQTWNLLG 320
>gi|114797120|ref|YP_759725.1| RluA family pseudouridine synthase [Hyphomonas neptunium ATCC
15444]
gi|114737294|gb|ABI75419.1| pseudouridine synthase, RluA family [Hyphomonas neptunium ATCC
15444]
Length = 349
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 137/308 (44%), Gaps = 82/308 (26%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
++LR ++ + D +L +NKP + ++G +D L A + D + P LVHRLD++
Sbjct: 89 EFLRSIIIHEDDDMLAINKPAGLAVQGGSGQGRHVDGLIAG-MDVDGHR-PVLVHRLDKD 146
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + + LT LF +S+ + K YWA+ +G P + G I
Sbjct: 147 TSGVLLLAKHPAAAARLTELF----RSREMDKV-----------YWAVTVGVPSPQAGQI 191
Query: 319 HAPLSKVLLD------------------DGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
+ K + D DG ER+I + G+E ++ ++T+Y V+
Sbjct: 192 RCWMVKGVPDINEPSGYRPVDPYATKRRDGDRERMIRSAQ-GVEGARHSITDYVVVSTAG 250
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPY 420
+W+ +RP T R HQLR H E + T I+GDYK Y
Sbjct: 251 PKAAWVAMRPETGRMHQLRFHMLE-MNTSILGDYK------------------------Y 285
Query: 421 KLRR--PDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
K RR P GL LHLH R L + P KP ++ VA +P HM
Sbjct: 286 KSRREVPQGL----------AEGLHLHARAL----IIPREHGKP-----IKIVAPLPPHM 326
Query: 479 KISWNLMS 486
K ++ +
Sbjct: 327 KETFETLG 334
>gi|170751707|ref|YP_001757967.1| pseudouridine synthase [Methylobacterium radiotolerans JCM 2831]
gi|170658229|gb|ACB27284.1| pseudouridine synthase [Methylobacterium radiotolerans JCM 2831]
Length = 224
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 33/207 (15%)
Query: 195 ADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPK 250
++ D RL+ YRD+ +LV++KP +P+ +G + + +DAL + P+
Sbjct: 2 SNAFDIGARLL-YRDALLLVIDKPAGLPVHPGPRGGETLTDHLDAL-----RFGLPRRPE 55
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
HRLDR++SG L +GR ++++ L LFS A+ + YWA+V G
Sbjct: 56 AAHRLDRDTSGCLALGRHAKALARLGKLFSG---------------SAVEKTYWAIVAGG 100
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
P ++G I PL++ DD ++ + A ++T +RVLG G +W+EL+P
Sbjct: 101 PAGEEGSIDLPLAR-RSDDPRSWWM-----KADPAGDPSLTHWRVLG-RAGGRTWLELKP 153
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQLRVHCA A G PI+GD YG
Sbjct: 154 VTGRTHQLRVHCA-ASGWPILGDAVYG 179
>gi|310816979|ref|YP_003964943.1| RluA family pseudouridine synthase [Ketogulonicigenium vulgare Y25]
gi|385234565|ref|YP_005795907.1| Pseudouridine synthase, RluA family protein [Ketogulonicigenium
vulgare WSH-001]
gi|308755714|gb|ADO43643.1| RluA family pseudouridine synthase [Ketogulonicigenium vulgare Y25]
gi|343463476|gb|AEM41911.1| Pseudouridine synthase, RluA family protein [Ketogulonicigenium
vulgare WSH-001]
Length = 347
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 154/361 (42%), Gaps = 58/361 (16%)
Query: 127 HFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTI 186
+ +G ++ C G+ V+ G ++K+N +E G + +P E I ++
Sbjct: 28 NLTQGQIEKMC-RKGELRVDGG------RVKSNARLEDGQNVRIPPLGAE--IEQQAPMA 78
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
+ + E+ ++ V ++D I+VLNKPP +P +G + + AL + Y
Sbjct: 79 VRTRVTRSDAEM--IQAAVLWKDEHIIVLNKPPGLPSQGGSGLGDRHVDGLTEALMFGYK 136
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
+ PKLVHRLD+++SGLLL+ RT L+ N K YWA
Sbjct: 137 DRPKLVHRLDKDTSGLLLLARTDRVARALSEALRHRNVRKI---------------YWAA 181
Query: 307 VIGSPKEKQGIIHAPLSKV-LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
V G P G + L K+ D K + A + E ++ A T+Y V +W
Sbjct: 182 VAGIPTPWAGSVKYGLVKMGRRGDEKMHCVHPAAVATTEGAKRAHTDYAVQDQAGQRMAW 241
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRP 425
+ L P+T R HQLR H AE +G PI+GD KYG G +
Sbjct: 242 MALVPITGRTHQLRAHMAE-IGHPIIGDGKYG-------------------GSNAENAGD 281
Query: 426 DGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLM 485
G V +K LHLH R L + P + L A +P+HM+ +W+ +
Sbjct: 282 GWGAGIGGGVQNK---LHLHARTL--------IIEHPITKETLTLQAPLPAHMQSTWDYL 330
Query: 486 S 486
Sbjct: 331 G 331
>gi|395520657|ref|XP_003764442.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Sarcophilus harrisii]
Length = 310
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 128/244 (52%), Gaps = 35/244 (14%)
Query: 170 LPVSMVEGRIS--KRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHL 227
+P ++ RI KRY T ++PN L+R + Y+D I+V+NKP +P+ G
Sbjct: 10 VPKDPIQRRIQELKRY-TKQLQNVHPNVLS-KALKRGILYQDKNIVVINKPYGLPVHGGP 67
Query: 228 PVHNSMD---ALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNK 284
V + + + A L + E L HRLD+E++G++++ R KE + LF K
Sbjct: 68 GVKSCITDILPILAKMLYGNKAEPLHLCHRLDKETTGVMVLAREKEMAHQVQELF----K 123
Query: 285 SKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL-SKVLLDDGKTERIILAQNSGL 343
++ ++K +YWA+ +G P G+I PL K + + ++ LA + +
Sbjct: 124 TRQVAK-----------KYWAICVGVPMHSAGMIDIPLIEKEVQGQQQHHKMTLAPSYRM 172
Query: 344 EASQE-----------AMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVG 392
E + A+T+Y+VL ++ CS++EL+P+T KHQLRVH A LG P++G
Sbjct: 173 ENGKTMKIRPNRHAHVAVTQYQVLSRTLS-CSFLELQPITGVKHQLRVHLAFGLGCPVLG 231
Query: 393 DYKY 396
D+KY
Sbjct: 232 DHKY 235
>gi|304319748|ref|YP_003853391.1| Ribosomal large subunit pseudouridine synthase C [Parvularcula
bermudensis HTCC2503]
gi|303298651|gb|ADM08250.1| Ribosomal large subunit pseudouridine synthase C [Parvularcula
bermudensis HTCC2503]
Length = 324
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 128/291 (43%), Gaps = 55/291 (18%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANM-GDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
W+K F V +Q KG V++ + D VE G++ + I P +R
Sbjct: 25 WMKRRFPGVTQGQVQKWLRKGQVRLNGGRVKADHRVESGEVVRVPPIDPEAAAPPPSR-- 82
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
PV + P E + +R LV Y D IL LNKP + ++G
Sbjct: 83 -PV------------------VGPA--EAEMMRGLVIYEDDDILALNKPAGLAVQGGAKT 121
Query: 230 HNSMDALAAAALSYDYNEG---PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSK 286
+D + + EG P+LVHRLDR++ G+LL+ +++ + L+ F K
Sbjct: 122 LIHIDGMLDV-----FGEGEARPRLVHRLDRDTGGVLLLAKSRAVAATLSLAFQQHRIGK 176
Query: 287 SLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEAS 346
+ YWA+ G P G I + K G+ R + G E
Sbjct: 177 T---------------YWAITKGVPHPLFGRIDMRIEKA----GEPGR---EKMRGTEQG 214
Query: 347 QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
Q A+T+Y+ + +++ LRP T R HQ+RVH + A+GTPIVGD KYG
Sbjct: 215 QSALTDYQTVETAGQKAAFLALRPHTGRTHQIRVHLS-AIGTPIVGDRKYG 264
>gi|83312904|ref|YP_423168.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
magneticum AMB-1]
gi|82947745|dbj|BAE52609.1| Hypothetical pseudouridine synthase in lpd 3'region
[Magnetospirillum magneticum AMB-1]
Length = 229
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 106/204 (51%), Gaps = 34/204 (16%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH---NSMDALAA--AALSYDYNEGPKLVH 253
D + V Y+D ++VL+KP L VH NS D L AL++ + E PKL H
Sbjct: 4 DEILSRVLYKDQDVIVLDKP------AGLAVHAGPNSPDHLELYLGALAFGWAEMPKLAH 57
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG L++GR +++ L +F K YW++ GSP
Sbjct: 58 RLDRDTSGCLILGRHAKAIKRLGKMFEHRRVEKV---------------YWSVSHGSPAA 102
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
G + APL KV G+ RI + A Q ++T++ VLG +G SWIE RP T
Sbjct: 103 DSGTVDAPLLKVSA-RGQGWRIKVD-----PAGQPSITDWSVLG-RSDGLSWIEWRPRTG 155
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+R+H A+ LG P++GD YG
Sbjct: 156 RTHQIRIH-AQYLGCPLLGDAYYG 178
>gi|344923325|ref|ZP_08776786.1| pseudouridine synthase [Candidatus Odyssella thessalonicensis L13]
Length = 233
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 112/214 (52%), Gaps = 37/214 (17%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPL---KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L L+ YRD+ +LVLNKP + KG P N D L + P L HRLD
Sbjct: 8 LEDLLLYRDAMVLVLNKPKGYAVHKGKGRKP--NLEDYFYQ--LQFGLPNLPGLGHRLDA 63
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
+SG L++GR +++ L LFS + K+ YWA+V G E QGI
Sbjct: 64 STSGCLVLGRHPKALRRLGILFSGGHIKKT---------------YWAVVTGKLPEAQGI 108
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I PL+K ++D K+ + +G Q+A+T+Y+VLG S++EL P+T R HQ
Sbjct: 109 IDLPLAK--MNDRKSNWWMKVDANG----QKAVTQYKVLGETAQ-YSFVELTPITGRTHQ 161
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVD 411
LRVH EALG PIVGD YG +++P +D
Sbjct: 162 LRVHL-EALGCPIVGDPVYG-------REVPNLD 187
>gi|393766637|ref|ZP_10355192.1| pseudouridine synthase [Methylobacterium sp. GXF4]
gi|392727955|gb|EIZ85265.1| pseudouridine synthase [Methylobacterium sp. GXF4]
Length = 224
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
YRD+ +LV++KPP +P+ +G + + +D L + P+ HRLDR++SG
Sbjct: 13 YRDALLLVIDKPPGLPVHPGPRGGETLTDHLDGL-----RFGLPRRPEAAHRLDRDTSGC 67
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L +GR ++++ L LF A A+ + YWA+V G P + G I PL
Sbjct: 68 LALGRHAKALARLGKLF---------------AGSAVDKTYWAVVEGGPDAETGRIDLPL 112
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
++ DD ++ + A A+T +RVLG G +W+EL+P+T R HQLRVHC
Sbjct: 113 AR-RSDDPRSWWM-----KADPAGDPALTHWRVLG-RAGGRTWLELKPVTGRTHQLRVHC 165
Query: 383 AEALGTPIVGDYKYG 397
A A G PI+GD YG
Sbjct: 166 A-ASGWPILGDSIYG 179
>gi|220924284|ref|YP_002499586.1| pseudouridine synthase [Methylobacterium nodulans ORS 2060]
gi|219948891|gb|ACL59283.1| pseudouridine synthase [Methylobacterium nodulans ORS 2060]
Length = 228
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 31/197 (15%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V YRD+ +LV++KP +P+ +G + +DAL + P+ HRLDR++S
Sbjct: 10 VLYRDALVLVIDKPAGLPVHPGPRGGETLVQHLDAL-----RFGLPRRPEAAHRLDRDTS 64
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L +GR ++++ L LF+ CE + + YWALV G P ++G I
Sbjct: 65 GCLALGRHAKALARLGGLFA--------------GCE-VRKTYWALVEGMPAAEEGAIDL 109
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL++ DD ++ + A A+T +R+ G +G +W+EL P+T R HQLRV
Sbjct: 110 PLAR-RSDDPRSWWM-----KPDPAGDPALTRWRLRGRGPDGSAWLELEPVTGRTHQLRV 163
Query: 381 HCAEALGTPIVGDYKYG 397
HCA A+G PI GD YG
Sbjct: 164 HCA-AMGWPIRGDAIYG 179
>gi|197104733|ref|YP_002130110.1| ribosomal large subunit pseudouridine synthase C [Phenylobacterium
zucineum HLK1]
gi|196478153|gb|ACG77681.1| ribosomal large subunit pseudouridine synthase C [Phenylobacterium
zucineum HLK1]
Length = 325
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 107/211 (50%), Gaps = 29/211 (13%)
Query: 189 GTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG 248
G L+P E Y R LV Y D +L LNKP + ++G +D L +A + EG
Sbjct: 77 GELDPR--EAAYARSLVIYEDEDVLALNKPSGLAVQGGTKTTRHIDGLLSA-----WGEG 129
Query: 249 ---PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
P+LVHRLDR++SG+L++G+T + + L F+ K YWA
Sbjct: 130 LERPRLVHRLDRDTSGVLVLGKTPGAAAKLAGAFAKRRTQKI---------------YWA 174
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
LV G PK QG++ PL+K + D +++ + ++ A TE+ L + +W
Sbjct: 175 LVAGLPKPGQGVLELPLAKKGVGD---REMMVPADPKDPRAETAETEFVTLARAADKVAW 231
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ L P T R HQLR H A+G PI+GD KY
Sbjct: 232 MALWPHTGRTHQLRAHML-AMGHPILGDPKY 261
>gi|192291994|ref|YP_001992599.1| RluA family pseudouridine synthase [Rhodopseudomonas palustris
TIE-1]
gi|192285743|gb|ACF02124.1| pseudouridine synthase, RluA family [Rhodopseudomonas palustris
TIE-1]
Length = 455
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 130/289 (44%), Gaps = 59/289 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+ L+ + + D+ +LVLNKP + ++G +D + L + P+LVHR+D+
Sbjct: 211 LQTLKAMTLFEDADVLVLNKPAGLAVQGGSGTTRHIDQMLEV-LRDAKGQKPRLVHRIDK 269
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G LL+ +T+ + + LT F + K YWALV G PK KQG
Sbjct: 270 ETAGCLLVAKTRFAATALTGSFRHRSARKI---------------YWALVAGVPKPKQGR 314
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I L+K ++ + + I+ G + + A+T Y V+ +W+ L+P+T R HQ
Sbjct: 315 ISTYLAK---EESEDDSIMRVAKHGDDGASHAVTYYAVVETSGQKLAWVSLKPVTGRTHQ 371
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H A +G IVGD KY F W+ P GL +
Sbjct: 372 LRAHMAH-IGHAIVGDPKY--FNIENWQL------------------PGGLQNR------ 404
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R + + P P G ++ A +P HM SWNL+
Sbjct: 405 ----LHLLARRI----VIP----HPRG-GVIDVSAPLPPHMLQSWNLLG 440
>gi|452963354|gb|EME68427.1| putative pseudouridine synthase in lpd 3'region [Magnetospirillum
sp. SO-1]
Length = 228
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 105/204 (51%), Gaps = 34/204 (16%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH---NSMDALAA--AALSYDYNEGPKLVH 253
D + V Y+D ++VL+KP L VH NS D L LS+ + E PKL H
Sbjct: 4 DEILSRVLYKDQDVIVLDKP------AGLAVHAGPNSPDHLELYLPGLSFGWAEVPKLAH 57
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLDR++SG L++GR +++ L +F K YW++ G+P+
Sbjct: 58 RLDRDTSGCLILGRHAKAIKRLGKMFEQHRVDKV---------------YWSVCHGAPEA 102
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
G + APL KV G+ RI + A Q +MT++ VLG G SWIE RP T
Sbjct: 103 DSGTVDAPLLKVSA-RGQGWRIKVD-----PAGQPSMTDWSVLG-RGGGLSWIEWRPRTG 155
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+R+H A+ LG P++GD YG
Sbjct: 156 RTHQIRIH-AKHLGCPLLGDAYYG 178
>gi|197104730|ref|YP_002130107.1| ribosomal large subunit pseudouridine synthase D [Phenylobacterium
zucineum HLK1]
gi|196478150|gb|ACG77678.1| ribosomal large subunit pseudouridine synthase D [Phenylobacterium
zucineum HLK1]
Length = 243
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 22/218 (10%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
+DE+ +R LV Y D+ IL LNKP + +G N++D L A + P+L+H
Sbjct: 10 TSDEVALVRSLVLYEDADILALNKPAGLSSQGGRGQVNTLDELLWA-FAKPGKARPRLIH 68
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI-GSPK 312
RLDR++SG++L +TK + L K+L K A + Y A+V G+P
Sbjct: 69 RLDRDTSGVILTAKTKPAAGFL---------GKALMK------RAFSKTYLAIVTPGAPV 113
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
+G+I PL +V ++G+ + + + +A + A + YR L G + +EL P T
Sbjct: 114 PAKGVIDRPLRRV--EEGREAYMRVCEPDHPDA-EAAASRYRTLKEG-EGAALVELSPET 169
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
R HQLRVH A A+G PI GD +YG + + +PR+
Sbjct: 170 GRMHQLRVHLA-AVGRPIAGDARYGGALMVGGRPVPRL 206
>gi|182678295|ref|YP_001832441.1| RluA family pseudouridine synthase [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634178|gb|ACB94952.1| pseudouridine synthase, RluA family [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 350
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 99/349 (28%), Positives = 168/349 (48%), Gaps = 67/349 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYD--TIPSGTLNPNA---DEIDYLRRLVKYRDS 210
++T +V GAR+ + G+ S R +P L A + LR ++ + D
Sbjct: 37 VRTGQVRVDGARVKTATRLAAGQ-SVRVPPLDLPERPLEKPAIVSADAQALREMILFEDR 95
Query: 211 AILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKE 270
++VLNKP + ++G + + +D + A+ L + + P LVHRLDR++SG+LL+ +T+
Sbjct: 96 DLMVLNKPFGLAVQGGSGMTHHIDKMLAS-LPNERGDRPVLVHRLDRDTSGVLLVAKTRR 154
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL-LDD 329
+ L +F +S+ K YWA+V G PK QG I L+K ++D
Sbjct: 155 MAAELGEIF----RSRQARKI-----------YWAVVEGVPKPAQGRISLYLAKGEGMED 199
Query: 330 GKT------------ERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ E++ +A++ G E ++ ++T Y ++ + + +W+ ++P+T R HQ
Sbjct: 200 KRGPHGRDAEARAGLEKMRVAKH-GEEDARHSVTYYAIVDKVPSRLAWLSMKPITGRTHQ 258
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LR H AEA+G PI+GD KYG + K PR + +P P + R
Sbjct: 259 LRAH-AEAIGHPIIGDPKYGL----KPKDDPRRN-DPNRAIPEGVERK------------ 300
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMS 486
LHL R L + P P G +L A +P HM+ +++L
Sbjct: 301 ----LHLLARRL----ILP----HPRG-GILDVTAPLPPHMQKTFDLFG 336
>gi|170741578|ref|YP_001770233.1| pseudouridine synthase [Methylobacterium sp. 4-46]
gi|168195852|gb|ACA17799.1| pseudouridine synthase [Methylobacterium sp. 4-46]
Length = 228
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 102/197 (51%), Gaps = 31/197 (15%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V YRD+ +LV++KP +P+ KG + +DAL + P+ HRLDR++S
Sbjct: 10 VLYRDALVLVIDKPAGLPVHPGPKGGETLVQHLDAL-----RFGLPRRPEAAHRLDRDTS 64
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L +GR ++++ L LF+ + K+ YWALV G+P ++G I
Sbjct: 65 GCLALGRHAKALARLGQLFAQGHARKT---------------YWALVDGAPAAEEGEIDL 109
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L++ ++E A A+T +R+ G G +W+EL P+T R HQLRV
Sbjct: 110 ALAR------RSEDPRSWWMRADPAGDPALTRWRLRGRSPEGGAWLELEPVTGRTHQLRV 163
Query: 381 HCAEALGTPIVGDYKYG 397
HCA A+G PI GD YG
Sbjct: 164 HCA-AMGWPIRGDAVYG 179
>gi|72127019|ref|XP_792641.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Strongylocentrotus purpuratus]
gi|390368006|ref|XP_003731372.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Strongylocentrotus purpuratus]
Length = 414
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 51/295 (17%)
Query: 178 RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALA 237
R RY T G L+ LR V + I+ L+KP +P+ G + +S+D+L
Sbjct: 123 RTDLRYQTRDLGRLSGEV-VAKILRDRVIFDKGDIIALDKPYGLPVHGGPGMKHSIDSLL 181
Query: 238 AAALSYDYN-------EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
L++ N E L+HRLD+E++G++L+ R + + +L +F
Sbjct: 182 PQ-LAWTLNNKGGGNTEELHLIHRLDKETTGVMLLARNERTARVLHEMFRK--------- 231
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERII-----------LAQ 339
+ +RY + +G P K+GI+ P+ + +D GK +I +
Sbjct: 232 ------RQIIKRYLVITVGIPSPKEGILDMPMIEKEID-GKHRMVIKPDMADLYPDTIGM 284
Query: 340 NSGLEA--SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY- 396
SG ++ S+EA+T Y+VL N C+ ++L P T KHQ+RVH A+ LG PI+GD+KY
Sbjct: 285 RSGRKSRDSKEAITRYKVLSERGN-CALVQLEPETGVKHQIRVHLAQGLGCPILGDHKYS 343
Query: 397 -----------GWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
+H P+ P +L P+ D Q + +KVP
Sbjct: 344 HHDRLAPQKLTAGILHSLGITQPKARTVPMHLHARQLVIPETFDQQNYFISTKVP 398
>gi|254780608|ref|YP_003065021.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040285|gb|ACT57081.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Liberibacter asiaticus str. psy62]
Length = 346
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 127/256 (49%), Gaps = 26/256 (10%)
Query: 144 FVEQGQMKPIRK-IKTNEVMEPGARIFLP--VSMVEGRISKRYDTIPSGTLNPNADEIDY 200
+ GQ++ +K +K N ++ G + +P ++ + I ++ S L ++D +
Sbjct: 40 ILRSGQVRVDKKRVKFNNRIQSGQVVRIPPVINALNHIIKEQKILDSSVNLTKHSD---F 96
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L+ ++ Y DS I V NKP + ++G + +D + + + P+L HRLD+E+S
Sbjct: 97 LKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVD-SKGQKPRLTHRLDQETS 155
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+L++ RT+ + LT F + + + K YW+LV G PK K+ I
Sbjct: 156 GILVVARTRAAAQHLTESF----RMRRIQKI-----------YWSLVWGIPKNKKECIAN 200
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K G ++ G + A++ ++V+ W+E++P T R HQLRV
Sbjct: 201 WLLKKSHIGGDYVHVVKQNEKG---ANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRV 257
Query: 381 HCAEALGTPIVGDYKY 396
H A +G PIVGD+KY
Sbjct: 258 H-ALHMGCPIVGDHKY 272
>gi|126327383|ref|XP_001372198.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Monodelphis domestica]
Length = 364
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 113/211 (53%), Gaps = 31/211 (14%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDAL--AAAALSYDYNEGP-KLVHRLDR 257
L+R + ++D ++V+NKP +P+ G V + + + A + + + P L HRLD+
Sbjct: 95 LKRGILHQDKDLIVINKPYGLPVHGGPGVKSCITDILPILAKMLFGHKAEPLHLCHRLDK 154
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ R KE + LF K++ ++K +YWA+ +G P G+
Sbjct: 155 ETTGVMILARDKEMAHQVQELF----KTRQVTK-----------KYWAICVGVPMPSAGM 199
Query: 318 IHAPL-SKVLLDDGKTERIILAQNSGLEASQE-----------AMTEYRVLGPMINGCSW 365
I P+ K + + ++ LA N LE + A+T+YRVL + C+
Sbjct: 200 IDIPIIEKEVQGQQQHHKMTLAPNYRLENGKTVKVRPNRHAHIAVTQYRVLSSTLT-CAL 258
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+EL+P+T KHQLRVH A LG P++GD+KY
Sbjct: 259 LELQPVTGVKHQLRVHLAFGLGCPVLGDHKY 289
>gi|349700727|ref|ZP_08902356.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter europaeus LMG 18494]
Length = 252
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 104/201 (51%), Gaps = 36/201 (17%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V YRD+ ++VL+KPP +P+ G + V + AL+ + GP L HRLD+++S
Sbjct: 21 VLYRDNRLVVLDKPPGLPVHPGRAGGVSVEDWFPALS------RHRNGPWLAHRLDQDTS 74
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++ K+++ + F+ K+ YWA+V G+P QG+I
Sbjct: 75 GCLVIALRKQALVAVQACFAAGQARKT---------------YWAIVQGTPGTAQGVIDT 119
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC----SWIELRPLTCRKH 376
PL++V + G+ R+ + G Q A T +RV G +G +W+EL T R H
Sbjct: 120 PLARV--EQGRQWRMQPVKTGG----QPARTRWRVRGTGHDGAGQPITWLELVLETGRTH 173
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q R HCA A+G PI GD +YG
Sbjct: 174 QARAHCA-AIGCPIRGDTRYG 193
>gi|75674513|ref|YP_316934.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
gi|74419383|gb|ABA03582.1| pseudouridine synthase [Nitrobacter winogradskyi Nb-255]
Length = 264
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 45/222 (20%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDY 245
T P +EI V +RD +LV++KP + + KG + S DAL +
Sbjct: 12 TAQPTPEEIQAR---VLHRDGLMLVIDKPAGIAVHRGPKGGANLEASFDAL-----RFGL 63
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
P L HRLDR++SG L++GR +++ + L LF SK+ YWA
Sbjct: 64 PRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGKISKT---------------YWA 108
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG------PM 359
+V G P E +G I PL ++ + G ++ +GL ++ T+++VLG
Sbjct: 109 VVEGGPSEDEGAIDIPLGRLNEERGWWQK---PDPNGLPST----TKWKVLGRSSPDTST 161
Query: 360 INGC----SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
++G +W+ L PLT R HQLRVHCA A+G PIVGD YG
Sbjct: 162 VSGAGVQLTWLSLEPLTGRTHQLRVHCA-AMGWPIVGDNIYG 202
>gi|407773645|ref|ZP_11120945.1| putative RNA pseudouridine synthase [Thalassospira profundimaris
WP0211]
gi|407283091|gb|EKF08632.1| putative RNA pseudouridine synthase [Thalassospira profundimaris
WP0211]
Length = 267
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 103/203 (50%), Gaps = 28/203 (13%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D L V +RDS I+VLNKPP + G + +DA L + P L HRLDR+
Sbjct: 12 DDLIAHVLHRDSNIIVLNKPPGLASHGGPKTYFHVDAYLPD-LKFGIQPEPTLAHRLDRD 70
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
++G LL+ R +S +T LF++ KS YWA+V G+ ++ G I
Sbjct: 71 TAGCLLLCRHPKSSKKITRLFTEKKIGKS---------------YWAVVRGAMEDDHGFI 115
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING----CSWIELRPLTCR 374
AP+ K+ + G T +L G Q + TEY VLG + +W+EL P T R
Sbjct: 116 DAPIGKINDESGWT---MLVHEDG----QPSKTEYTVLGRGKDADGKDITWLELVPHTGR 168
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQLRVH + +G P++GD YG
Sbjct: 169 THQLRVHL-DHVGHPVIGDPFYG 190
>gi|117925074|ref|YP_865691.1| ribosomal large subunit pseudouridine synthase C [Magnetococcus
marinus MC-1]
gi|117608830|gb|ABK44285.1| ribosomal large subunit pseudouridine synthase C [Magnetococcus
marinus MC-1]
Length = 328
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 101/199 (50%), Gaps = 24/199 (12%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLM 265
+RD ILVLNKP +P+ G +DA+ A+ +L HRLD+E+SGLLL
Sbjct: 102 HRDGWILVLNKPAGIPVHGGSGHQWGVVDAVRASLEKLGIEAQAELCHRLDKETSGLLLF 161
Query: 266 GRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV 325
G +V LLT + +K+ Y LV G P +QG+I+ PLSK
Sbjct: 162 GLRPRAVRLLTEAMRENQVTKT---------------YLTLVQGVPAARQGVINQPLSKG 206
Query: 326 LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEA 385
+ G ER+++ + G Q A+T YRVL S +E++ T R HQ+RVH +
Sbjct: 207 NVRGG--ERMVVVEQGG----QRAVTHYRVL-RSYGVASLLEVQLETGRTHQIRVHM-QW 258
Query: 386 LGTPIVGDYKYGWFVHRRW 404
LG P+ GD KYG +W
Sbjct: 259 LGHPVAGDGKYGDKAFNKW 277
>gi|209963759|ref|YP_002296674.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209957225|gb|ACI97861.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
Length = 336
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 109/208 (52%), Gaps = 25/208 (12%)
Query: 192 NPNADE--IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP 249
P DE LR V +RD ++VL+KP + +G +DA+ A L ++ P
Sbjct: 86 RPEVDERAAKELRARVLFRDHDVIVLDKPAGLATQGGTNQVKHLDAMLDA-LKFEAEGRP 144
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
KLVHRLD+++SG L++ R+ + + LT F +S+ K YWA+ +G
Sbjct: 145 KLVHRLDKDTSGCLVLARSAAAAAKLTAAF----RSREARKI-----------YWAVTVG 189
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
PK +G I P++K G ER+ + ++ G+ A+T Y VL +++ L
Sbjct: 190 VPKPMKGRIDLPVAKEAGTRG--ERMTVDEDEGV----HAITYYTVLEHAHKQAAFVALW 243
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P T R HQLRVH A ALGTPI+GD KY
Sbjct: 244 PRTGRTHQLRVHMA-ALGTPILGDGKYA 270
>gi|299133083|ref|ZP_07026278.1| pseudouridine synthase [Afipia sp. 1NLS2]
gi|298593220|gb|EFI53420.1| pseudouridine synthase [Afipia sp. 1NLS2]
Length = 244
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 108/212 (50%), Gaps = 36/212 (16%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDY 245
T P A+E ++ V +RD +LV++KP + + KG + S DAL Y
Sbjct: 3 TPQPTAEE---MQARVLHRDGLMLVIDKPAGIAVHKGPKGGPNLEASFDAL-----RYGL 54
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
P L HRLDR++SG L++GR +++ + L LF K+ YWA
Sbjct: 55 PRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGKIGKT---------------YWA 99
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
+V G P E QG I PL ++ G ++ +GL + + + V+G +G +W
Sbjct: 100 VVEGGPAENQGEIDIPLGRLDETRGWWQK---PDPNGLPSQ----SRWSVMG-RGDGLTW 151
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ L P+T R HQLRVHCA A+G PIVGD YG
Sbjct: 152 LALEPITGRTHQLRVHCA-AMGFPIVGDNIYG 182
>gi|167645618|ref|YP_001683281.1| pseudouridine synthase [Caulobacter sp. K31]
gi|167348048|gb|ABZ70783.1| pseudouridine synthase [Caulobacter sp. K31]
Length = 286
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 22/221 (9%)
Query: 191 LNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
+N +EI + + LV + D ++ VLNKP + +G +++D L A D P+
Sbjct: 40 INLTPEEIAFTKSLVIHEDDSVFVLNKPAGLSSQGGRIQAHTLDDLLWALARRDRPR-PR 98
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI-G 309
L+HRLDR++SG++L RTK + + L K+L + + YWA+V G
Sbjct: 99 LIHRLDRDTSGVILTARTKPAATFL---------GKAL------MGKRFRKTYWAIVTPG 143
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
+P+ + G I +PL + + R+ A + E A + YR L G + +EL
Sbjct: 144 APEPRGGQIDSPLRRESIGREAYMRVCEADHPDAET---ARSRYRTLA-ATEGAALVELS 199
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
P T R HQLRVH A ++G PI GD +YG + +PR+
Sbjct: 200 PDTGRMHQLRVHMA-SIGRPIAGDSRYGGALMLGGAPVPRL 239
>gi|381168928|ref|ZP_09878109.1| putative enzyme [Phaeospirillum molischianum DSM 120]
gi|380681944|emb|CCG42929.1| putative enzyme [Phaeospirillum molischianum DSM 120]
Length = 231
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 24/199 (12%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D + V YRD ++VL+KP + + + ++ L L + +++ P+L HRLDR+
Sbjct: 4 DEILARVLYRDQDVIVLDKPAGLAVHAGPGTTDHLE-LYLDPLRFGWSQNPRLAHRLDRD 62
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG L++GR +++ L +F K YW++ IG+P + +G +
Sbjct: 63 TSGCLILGRHDKALKRLGRMFETHRIEKV---------------YWSVCIGAPPQARGRV 107
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL KV + GK R+ + A Q A+T++ VLG +G W+E RP T R HQ+
Sbjct: 108 EAPLLKV-SEPGKGWRVRVD-----PAGQRAVTDWVVLG-QADGLCWVEWRPRTGRTHQI 160
Query: 379 RVHCAEALGTPIVGDYKYG 397
R H A LG P++GD +G
Sbjct: 161 RAHAAH-LGCPLLGDAVHG 178
>gi|89094316|ref|ZP_01167257.1| ribosomal large subunit pseudouridine synthase C [Neptuniibacter
caesariensis]
gi|89081375|gb|EAR60606.1| ribosomal large subunit pseudouridine synthase C [Oceanospirillum
sp. MED92]
Length = 321
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 105/199 (52%), Gaps = 24/199 (12%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
D L + V Y D ++V+NKP + + G + S+ + + + +LVHRLDR+
Sbjct: 92 DQLEQAVLYEDDDLIVVNKPSGIAVHGGSGI--SLGLIESFRQMRPQCKFLELVHRLDRD 149
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG +L+ + + ++ L+ D K +++K Y ALV+GS E++ I
Sbjct: 150 TSGCILIAKKRSTLKLM----HDSLKKSTITKI-----------YHALVVGSWSERKRRI 194
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G +E +TEY+VL + +E RP+T R HQ+
Sbjct: 195 DAPLKKNELKSG--ERVVKVTADG----KECLTEYKVLQRFGREATLVEARPITGRTHQI 248
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVHC A G PIVGD KYG
Sbjct: 249 RVHCQFA-GHPIVGDEKYG 266
>gi|365900462|ref|ZP_09438334.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. STM 3843]
gi|365418790|emb|CCE10876.1| putative RNA pseudouridine synthase (Uracil hydrolyase)
[Bradyrhizobium sp. STM 3843]
Length = 257
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 106/220 (48%), Gaps = 42/220 (19%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHR 254
D + V +RD +LV++KP +P+ KG + S DAL + P L HR
Sbjct: 9 DEMLARVLHRDGLMLVIDKPAGIPVHKGPKGGPNLEASFDAL-----RFGLPRPPVLAHR 63
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LD+E+SG L++GR +++ + L LF SK+ YWA+V G P E
Sbjct: 64 LDKETSGCLVLGRHRKATASLGLLFKHGKISKT---------------YWAVVEGGPTED 108
Query: 315 QGIIHAPLSKVLLDDG------------KTERIILAQNSG-----LEASQEAMTEYRVLG 357
+G I PL + + G T+ +L ++S ++S A T R G
Sbjct: 109 EGTIELPLGRRNAERGWWQKPDPEGQPAITKWRVLGRSSSRANVQADSSSSAATPSRPGG 168
Query: 358 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ +W+ + P+T R HQLRVH A A+G PIVGD YG
Sbjct: 169 EVTQNLTWLAMEPVTGRTHQLRVHAA-AMGWPIVGDNIYG 207
>gi|414164763|ref|ZP_11421010.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410882543|gb|EKS30383.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 245
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 108/212 (50%), Gaps = 36/212 (16%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDY 245
T P A+E ++ V +RD +LV++KP + + KG + S DAL Y
Sbjct: 3 TPQPTAEE---MQARVLHRDGLMLVVDKPAGIAVHKGPKGGPNLEASFDAL-----RYGL 54
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
P L HRLDR++SG L++GR +++ + L LF K+ YWA
Sbjct: 55 PRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGKIGKT---------------YWA 99
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
+V G P E +G I PL ++ + G ++ +GL + + + V+G G +W
Sbjct: 100 VVEGGPAENEGEIDIPLGRLDAERGWWQK---PDPNGLPSK----SRWTVMG-RGEGLTW 151
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ L P+T R HQLRVHCA A+G PIVGD YG
Sbjct: 152 LALEPITGRTHQLRVHCA-AMGFPIVGDNIYG 182
>gi|349686308|ref|ZP_08897450.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter oboediens 174Bp2]
Length = 252
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 102/201 (50%), Gaps = 36/201 (17%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V YRD+ ++VL+KPP +P+ G V + AL+ + GP L HRLDR++S
Sbjct: 21 VLYRDNRLVVLDKPPGLPVHPGRGGGQSVEDWFPALS------RHRNGPWLAHRLDRDTS 74
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++ K+++ + + K+ YWA+V G+P QG+I
Sbjct: 75 GCLVVALRKQALVAVQACLAAGKARKT---------------YWAIVQGAPDAAQGVIDV 119
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC----SWIELRPLTCRKH 376
PL++V D + R+ + G Q A T +RVLG +G SW+EL T R H
Sbjct: 120 PLARVEHD--RQWRMQPVKTGG----QPARTRWRVLGTGHDGAGQPISWLELVLETGRTH 173
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q R HCA A+G PI GD +YG
Sbjct: 174 QARAHCA-AIGCPIRGDTRYG 193
>gi|414176666|ref|ZP_11430895.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
gi|410886819|gb|EKS34631.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
Length = 243
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 132/293 (45%), Gaps = 79/293 (26%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDY 245
T P +EI + V +RD +LV++KP + + KG + S DAL Y
Sbjct: 3 TPQPTPEEI---QARVLHRDGLMLVIDKPAGIAVHKGPKGGPNLEASFDAL-----RYGL 54
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
P L HRLDR++SG L++GR +++ + L LF K+ YWA
Sbjct: 55 PRPPVLAHRLDRDTSGCLVLGRHRKATASLGLLFKHGKIDKT---------------YWA 99
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
+V GSP +G I PL ++ + G ++ +GL + T ++V+G +G +W
Sbjct: 100 VVEGSPDANEGEIDIPLGRLDAERGWWQK---PDPNGLPSR----TTWKVMG-RGDGLTW 151
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRP 425
+ + P+T R HQLRVHCA A G PIVGD YG PR
Sbjct: 152 LAMEPITGRTHQLRVHCA-ASGWPIVGDNIYG--------NGPRFG-------------- 188
Query: 426 DGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
P LHLH RE+ + P +KP +R +A +P+H+
Sbjct: 189 -------------EPSLHLHAREI----VIPLSKNKPP----VRVIAPVPAHL 220
>gi|374572009|ref|ZP_09645105.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM471]
gi|374420330|gb|EHQ99862.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM471]
Length = 235
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 107/208 (51%), Gaps = 36/208 (17%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGP 249
ADEI L R++ +RD +LV++KP +P+ KG + S DAL + P
Sbjct: 10 TADEI--LARVL-HRDGLMLVIDKPAGLPVHRGPKGGANLETSFDAL-----RFGLPRPP 61
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
L HRLD+++SG L++GR +++ + L LF K+ YW +V G
Sbjct: 62 VLAHRLDKDTSGCLVLGRHRKATASLGLLFKHGKIGKT---------------YWTIVEG 106
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
P E++G I PL ++ + G ++ Q+A+T ++V+G G +W+ +
Sbjct: 107 GPTEEEGTIDMPLGRLNAERGWWQKPD-------PEGQKAITNWKVMG-RGGGLTWLAME 158
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T R HQLRVH A A G PI GD YG
Sbjct: 159 PVTGRTHQLRVH-ASATGWPIFGDNIYG 185
>gi|384214166|ref|YP_005605329.1| hypothetical protein BJ6T_04430 [Bradyrhizobium japonicum USDA 6]
gi|354953062|dbj|BAL05741.1| hypothetical protein BJ6T_04430 [Bradyrhizobium japonicum USDA 6]
Length = 233
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 107/208 (51%), Gaps = 36/208 (17%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGP 249
ADEI L R++ +RD +LV++KP +P+ KG + S DAL + P
Sbjct: 8 TADEI--LARVL-HRDGLMLVIDKPAGLPVHRGPKGGANLETSFDAL-----RFGLPRPP 59
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
L HRLD+++SG L++GR +++ + L LF K+ YW +V G
Sbjct: 60 VLAHRLDKDTSGCLVLGRHRKATASLGLLFKHGKIGKT---------------YWTVVEG 104
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
P E +G + PL ++ + G ++ Q+A+T ++V+G +G +W+ +
Sbjct: 105 GPAEDEGTVDMPLGRLNAERGWWQKPD-------PEGQKAITNWKVMG-RGDGLTWLAME 156
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T R HQLRVH A A G PI GD YG
Sbjct: 157 PVTGRTHQLRVHSA-ATGWPIFGDNIYG 183
>gi|115522347|ref|YP_779258.1| pseudouridine synthase [Rhodopseudomonas palustris BisA53]
gi|115516294|gb|ABJ04278.1| pseudouridine synthase [Rhodopseudomonas palustris BisA53]
Length = 278
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 113/248 (45%), Gaps = 66/248 (26%)
Query: 191 LNPNADEI--DYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYD 244
L P A E+ D + V +RD +LV++KP +P+ KG + +S DAL Y
Sbjct: 6 LEPTAKELTPDEILARVLHRDGLMLVIDKPAGLPVHRGPKGGANLESSFDALC-----YG 60
Query: 245 YNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYW 304
P L HRLDR++SG L++GR +++ + L LF SK+ YW
Sbjct: 61 LPRPPVLAHRLDRDTSGCLVLGRHRKATATLGLLFKHGKISKT---------------YW 105
Query: 305 ALVIGSPKEKQGIIHAPLSKVLLDDGKTERI---------------------ILAQNSGL 343
A+V G P++ QG I P+ ++ + G ++I + SG+
Sbjct: 106 AVVEGGPEQDQGTIDLPIGRLNAERGWWQKIDPEGLPSVTNWTVLGRSFSPPPCGEGSGV 165
Query: 344 EASQEAMTEYRVLGP---------MINGC-----SWIELRPLTCRKHQLRVHCAEALGTP 389
++ LGP GC +W+ L PLT R HQLRVHCA A+G P
Sbjct: 166 GVPNGSL----ALGPPHPSPPHKGEGAGCASGQLTWLALEPLTGRTHQLRVHCA-AMGWP 220
Query: 390 IVGDYKYG 397
I GD YG
Sbjct: 221 IFGDNIYG 228
>gi|42520290|ref|NP_966205.1| ribosomal large subunit pseudouridine synthase C [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42410028|gb|AAS14139.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Drosophila melanogaster]
Length = 307
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 128/288 (44%), Gaps = 51/288 (17%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQM-ECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
+++ F +++ SVI+ KGL+++ +C V GQ ++ +
Sbjct: 20 YIRRIFPDLKQSVIEKSLRKGLIKVNDCKAKSSDRVNSGQTITLKHL------------- 66
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
+ +E S R N ++ LR + Y D IL +NKP V ++G + V
Sbjct: 67 ---NYIENANSDR---------KYNEKLVNLLRENILYEDEYILAINKPAGVIVQGGVKV 114
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
SM L E K+VHRLDR++SG+++ R L F K + +
Sbjct: 115 KISMSDLLDQIRE---GETFKIVHRLDRDTSGVIIFARNANVARYLMEEF----KGRRVK 167
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
K Y AL G P + G I PL K + E++++ +NS Q A
Sbjct: 168 KT-----------YLALTSGIPSKDSGTIDYPLVKKYV--SGQEKVVVDENS----PQNA 210
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
T + ++ + ++++L+P+T R HQLR H A + PI+GD KYG
Sbjct: 211 TTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAH-INCPILGDGKYG 257
>gi|58698525|ref|ZP_00373428.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Drosophila ananassae]
gi|225630144|ref|YP_002726935.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia sp. wRi]
gi|225677282|ref|ZP_03788264.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|58534967|gb|EAL59063.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Drosophila ananassae]
gi|225590674|gb|EEH11919.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|225592125|gb|ACN95144.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia sp. wRi]
Length = 307
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 128/288 (44%), Gaps = 51/288 (17%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQME-CANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
+++ F +++ SVI+ KGL++++ C V GQ ++ +
Sbjct: 20 YIRRIFPDLKQSVIEKSLRKGLIKVDDCKAKSSDRVNSGQTITLKHL------------- 66
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
+ +E S R N ++ LR + Y D IL +NKP V ++G + V
Sbjct: 67 ---NYIENANSDR---------KYNEKLVNLLRENILYEDEYILAINKPAGVIVQGGVKV 114
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
SM L E K+VHRLDR++SG+++ R L F K + +
Sbjct: 115 KISMSDLLDQIRE---GETFKIVHRLDRDTSGVIIFARNANVARYLMEEF----KGRRVK 167
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
K Y AL G P + G I PL K + E++++ +NS Q A
Sbjct: 168 KT-----------YLALTSGIPSKDSGTIDYPLVKKYV--SGQEKVVVDENS----PQNA 210
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
T + ++ + ++++L+P+T R HQLR H A + PI+GD KYG
Sbjct: 211 TTHFSIIAKSKHNVAYLKLQPITGRTHQLRAHLAH-INCPILGDGKYG 257
>gi|240139473|ref|YP_002963948.1| pseudouridine synthase [Methylobacterium extorquens AM1]
gi|240009445|gb|ACS40671.1| pseudouridine synthase [Methylobacterium extorquens AM1]
Length = 213
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 102/190 (53%), Gaps = 32/190 (16%)
Query: 212 ILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGR 267
+LV++KP +P+ KG + + +DAL + P+ HRLDR++SG L++GR
Sbjct: 1 MLVIDKPAGLPVHPGPKGGPTLTDHLDAL-----RFGLPRRPEAAHRLDRDTSGCLVLGR 55
Query: 268 TKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLL 327
++++ L LF+D K+ YWALV G P+ +G I PL+K
Sbjct: 56 HAKALARLNRLFADGKVDKT---------------YWALVEGGPEAMEGRIDLPLAKR-S 99
Query: 328 DDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALG 387
DD ++ + A ++T YRVLG SW+EL+P+T R HQLRVHCA A+G
Sbjct: 100 DDPRSWWMKTD-----PAGAPSLTLYRVLG-RSECLSWLELKPVTGRTHQLRVHCA-AMG 152
Query: 388 TPIVGDYKYG 397
PI GD YG
Sbjct: 153 WPIRGDAIYG 162
>gi|197128104|gb|ACH44602.1| putative RIKEN cDNA 2410001E19 [Taeniopygia guttata]
Length = 283
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 112/214 (52%), Gaps = 33/214 (15%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSM-DAL--AAAALSYDYNEGPKLVHRLDR 257
L++ Y++ I+V++KP +P+ G + N + D L A L E L HRLD+
Sbjct: 17 LKQRTLYQNEEIVVIDKPYGLPVHGGPGIKNCIADVLPILAKMLENMKAEPLHLCHRLDK 76
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ R+KE+ + LF K++ + K YWA+V+G P +G+
Sbjct: 77 ETTGVMVLARSKEAAEKIRLLF----KTRQVEKI-----------YWAIVLGDPDPVEGV 121
Query: 318 IHAPLSKVLLDDGKTE-RIILAQN-------------SGLEASQEAMTEYRVLGPMINGC 363
+ P+ + + ++ ++ LA N G ++ A+T YR L + C
Sbjct: 122 VEIPIVEKEVQSHQSHYKMTLAPNYRLCPEDGKVMKTRGSRHAERAVTRYRRLCAA-SAC 180
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
S +EL+P+T KHQ+RVH A LG PI+GD+KY
Sbjct: 181 SLLELQPVTGVKHQIRVHLAYGLGCPILGDHKYS 214
>gi|374335784|ref|YP_005092471.1| ribosomal large subunit pseudouridine synthase C [Oceanimonas sp.
GK1]
gi|372985471|gb|AEY01721.1| ribosomal large subunit pseudouridine synthase C [Oceanimonas sp.
GK1]
Length = 316
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 138/300 (46%), Gaps = 67/300 (22%)
Query: 125 QSHFNKGLVQMECANMG---DSFVEQGQMKPI------RKIKTNEVMEPGARIFLPVSMV 175
Q H + L+ +E + G D+F+ + Q+K + R ++ EV RI ++
Sbjct: 3 QDHQSVRLLTIEAEHEGQRIDNFL-RTQLKGVPKSLIYRILRKGEVRVNKKRIKPEYKLL 61
Query: 176 EG--------RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHL 227
G R+++R D +PS L D + L + Y D A+LVLNKP + + G
Sbjct: 62 AGDVIRVPPVRVAEREDVLPSAKL----DSVQGLETAIVYEDDALLVLNKPSGMAVHG-- 115
Query: 228 PVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLLLMGRTKESVSLLTW 277
+ LS+ EG + LVHRLDR++SG+LL+ + + S+L
Sbjct: 116 ----------GSGLSFGVIEGLRALRPQARFLELVHRLDRDTSGILLVAKKR---SMLRS 162
Query: 278 LFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIIL 337
L + + + M + Y ALV G + Q ++ APL K L G ER++
Sbjct: 163 LHEQLRE------------KTMDKHYLALVRGQWQSHQKVVKAPLKKNELASG--ERVVR 208
Query: 338 AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
G + + T +R++ G + +E P+T R HQ+RVH A G PI GD KYG
Sbjct: 209 VDKEG----KPSETRFRIV-QKFTGATLVECSPVTGRTHQIRVHTLHA-GHPIAGDDKYG 262
>gi|392380039|ref|YP_004987197.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356882406|emb|CCD03418.1| Pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 236
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 25/197 (12%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
LR + + D + +++KP + + + + +D L L+ P+L HRLDR+++
Sbjct: 13 LRARILHEDEDVFIIDKPAGLAVHKAGRITDHLD-LYLPFLAEGDGTPPRLAHRLDRDTA 71
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR+ ++ L +F+ + K+ YWA+ G P+ +G+I
Sbjct: 72 GCLVLGRSLWALKRLGDMFAAGHVEKT---------------YWAISEGIPETAEGVIDF 116
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL K+L+ I+ +G Q A+T+Y+VLG NG +W+ELRP T R HQLRV
Sbjct: 117 PLLKLLIPGAWN---IVTHPTG----QPAVTQYKVLG-TGNGRAWLELRPRTGRTHQLRV 168
Query: 381 HCAEALGTPIVGDYKYG 397
H A A+G P+VG+ YG
Sbjct: 169 HSA-AIGCPLVGEPYYG 184
>gi|154245827|ref|YP_001416785.1| pseudouridine synthase [Xanthobacter autotrophicus Py2]
gi|154159912|gb|ABS67128.1| pseudouridine synthase [Xanthobacter autotrophicus Py2]
Length = 264
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 103/197 (52%), Gaps = 29/197 (14%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V YRD +L+++KP +P+ KG + + +DAL + P+L HRLD+++S
Sbjct: 21 VLYRDGMMLIIDKPHGLPVHAGPKGGETLADHLDAL-----RFGLPRAPELAHRLDKDTS 75
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR ++++LL LF++ + K+ Y A+ GSP E G I
Sbjct: 76 GCLVLGRHAKALALLGKLFANGSVGKT---------------YLAVTQGSPAEDAGRIDQ 120
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL+K G + + G +QEA+T+YRVL G + + L P+T R HQLR
Sbjct: 121 PLAKRSPHRGWWMQAV---PKGTPGAQEAITDYRVLH-RAGGFAVMALSPVTGRTHQLRA 176
Query: 381 HCAEALGTPIVGDYKYG 397
H + LG PI GD YG
Sbjct: 177 HLSN-LGHPIFGDAIYG 192
>gi|88798806|ref|ZP_01114389.1| ribosomal large subunit pseudouridine synthase C [Reinekea
blandensis MED297]
gi|88778569|gb|EAR09761.1| ribosomal large subunit pseudouridine synthase C [Reinekea
blandensis MED297]
Length = 313
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 137/288 (47%), Gaps = 49/288 (17%)
Query: 110 SWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
++++YY + V S I KG V+ V + + KP K+ +V+
Sbjct: 20 NFLRYYLNNVPKSRIYRIIRKGEVR----------VNKKRAKPDTKLSEGDVVR-----V 64
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
PV+M E I + PS L D + + DSA+L +NKP + + G +
Sbjct: 65 PPVTMAEKTIE---NPQPSAGLRKALDHA------IVFEDSALLAVNKPSGLAVHGGSGL 115
Query: 230 H-NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSL 288
++AL A S + E LVHRLDR++SG++L+ + ++S++LL F + +
Sbjct: 116 KLGLIEALRAQRESEPFLE---LVHRLDRDTSGVVLVAKKRKSLTLLQDEFRQKTRVR-- 170
Query: 289 SKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQE 348
+ YW LV G + ++ APL + + ER + Q +G +
Sbjct: 171 ------------KTYWCLVKGHWPDGCSVVDAPLLR-HEESASGERRVSVQANG----KP 213
Query: 349 AMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ T +RVL C+W+E P+T R HQ+RVHC + +G PI+GD KY
Sbjct: 214 SRTHFRVL-KQYQDCAWVEALPITGRTHQIRVHC-QYVGCPILGDDKY 259
>gi|389690733|ref|ZP_10179626.1| 23S RNA-specific pseudouridylate synthase [Microvirga sp. WSM3557]
gi|388588976|gb|EIM29265.1| 23S RNA-specific pseudouridylate synthase [Microvirga sp. WSM3557]
Length = 226
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 36/208 (17%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGP 249
NA+EI + RL+ YRD+ +LV++KP +P+ KG + + +DAL + P
Sbjct: 2 NAEEI--VNRLL-YRDALMLVIDKPAGLPVHPGPKGGETLFHHLDAL-----RFGLPRRP 53
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
+ HRLD+++SG L++GR ++++ L LF K YWA+V G
Sbjct: 54 EAAHRLDKDTSGCLVLGRHPKAIARLNELFRKGEVDKV---------------YWAVVEG 98
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
P E +G I L+ D G ++ Q ++T++RVLG G +ELR
Sbjct: 99 GPHEDEGEIDLALAPKSPDRGWWMKVD-------PKGQPSLTKWRVLG-RGEGLCLLELR 150
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T R HQLRVHCA A+ PI+GD YG
Sbjct: 151 PITGRTHQLRVHCA-AMNFPILGDPIYG 177
>gi|407768788|ref|ZP_11116166.1| putative RNA pseudouridine synthase [Thalassospira xiamenensis M-5
= DSM 17429]
gi|407288472|gb|EKF13950.1| putative RNA pseudouridine synthase [Thalassospira xiamenensis M-5
= DSM 17429]
Length = 269
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 39/226 (17%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L V +RDS ++VLNKPP + G + +DA L + P L HRLDR+++
Sbjct: 9 LTASVLHRDSNVIVLNKPPGLASHGGPKTYFHVDAYLPD-LKFGIQPEPTLAHRLDRDTA 67
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R +S +T LF++ + + + YWA+V G+ + G I A
Sbjct: 68 GCLLLCRHPKSSKKITRLFTE---------------KLIGKTYWAVVRGAVADDHGFIDA 112
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG----PMINGCSWIELRPLTCRKH 376
P+ K +D R+++ ++ Q + TEYRVLG + +W+ L P T R H
Sbjct: 113 PIGKT--NDESGWRMLVHED-----GQPSKTEYRVLGRGKDEAGDDITWLALTPHTGRTH 165
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKL 422
QLRVH + +G P++GD YG R D P G+P L
Sbjct: 166 QLRVHL-DHIGHPVLGDPFYG-----------RGDEPPIFGQPPTL 199
>gi|296533864|ref|ZP_06896396.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
gi|296265811|gb|EFH11904.1| ribosomal large subunit pseudouridine synthase C [Roseomonas
cervicalis ATCC 49957]
Length = 236
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 98/191 (51%), Gaps = 32/191 (16%)
Query: 211 AILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMG 266
A+LV++KP +P+ +G + + + ALA + P+ HRLD +++G L++G
Sbjct: 29 AVLVIDKPAGLPVHRGPRGGASLEDHLPALAQGKRHW-----PQPAHRLDTDTAGCLVLG 83
Query: 267 RTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
RTK +++ L LF++ K+ YWA+V G P + G I PL K
Sbjct: 84 RTKPALAALGRLFAEGRARKT---------------YWAVVRGGPAAQSGRIDLPLRKT- 127
Query: 327 LDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEAL 386
T + A G Q A+T +RV G G +W+ELRP T R HQLRVHCA
Sbjct: 128 -SSAATGWRMEAHPDG----QPALTRWRVRG-RGPGLAWLELRPETGRTHQLRVHCASQ- 180
Query: 387 GTPIVGDYKYG 397
G PI+GD YG
Sbjct: 181 GWPILGDPFYG 191
>gi|27375585|ref|NP_767114.1| hypothetical protein blr0474 [Bradyrhizobium japonicum USDA 110]
gi|27348722|dbj|BAC45739.1| blr0474 [Bradyrhizobium japonicum USDA 110]
Length = 218
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 33/195 (16%)
Query: 207 YRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
+RD +LV++KP +P+ KG + S DAL + P L HRLD+++SG
Sbjct: 3 HRDGLMLVIDKPAGLPVHRGPKGGANLEASFDAL-----RFGLPRPPVLAHRLDKDTSGC 57
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L++GR +++ + L LF K+ YW +V G P E +G I PL
Sbjct: 58 LILGRHRKATASLGLLFKHGKIGKT---------------YWTVVEGGPAEDEGTIDMPL 102
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
++ + G ++ Q+A+T ++V+G +G +W+ + P+T R HQLRVH
Sbjct: 103 GRLNAERGWWQKPD-------PEGQKAITNWKVMG-RGDGFTWLAMEPVTGRTHQLRVHS 154
Query: 383 AEALGTPIVGDYKYG 397
A A G PI GD YG
Sbjct: 155 A-ATGWPIFGDNIYG 168
>gi|241574172|ref|XP_002403064.1| ribosomal pseudouridine synthase, putative [Ixodes scapularis]
gi|215502139|gb|EEC11633.1| ribosomal pseudouridine synthase, putative [Ixodes scapularis]
Length = 443
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 110/234 (47%), Gaps = 41/234 (17%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN------E 247
+ + +D LR+LV Y D+ ILVLNKP + H P DA L D + +
Sbjct: 173 HTEAVDLLRKLVLYNDNDILVLNKP--YGMLCHGPAPGVSDACVLTKLLPDLSSALYPRQ 230
Query: 248 GPKL--VHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
KL VHRLDR+ +G+LL+ RT+ +L LF SK+ Y A
Sbjct: 231 DAKLYTVHRLDRDVTGVLLLARTQRMADMLNSLFQKHQVSKT---------------YLA 275
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLE-----------ASQEAMTEYR 354
+ G P +G+I PL++ ++ K R++L N L+ S A+T YR
Sbjct: 276 ITAGVPDHLEGVIDMPLAEGEVEGAK--RMVL--NPKLDPEFQRLVPKFRKSFAAVTTYR 331
Query: 355 VLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMP 408
VL ++ELRP T KHQLR H L PI+GD+KY +++P
Sbjct: 332 VLAS-CGRAGYLELRPTTGVKHQLRAHLGLGLRCPILGDHKYSHLRRLAPQKLP 384
>gi|386287786|ref|ZP_10064957.1| RluA family pseudouridine synthase [gamma proteobacterium BDW918]
gi|385279296|gb|EIF43237.1| RluA family pseudouridine synthase [gamma proteobacterium BDW918]
Length = 317
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 107/198 (54%), Gaps = 26/198 (13%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
LR + Y D+ +LV+NKP + + G + S+ + A Y +LVHRLDR++S
Sbjct: 92 LRSAILYEDAGLLVINKPSGLAVHGGSGI--SLGLIEALRQMYPEQRHLELVHRLDRDTS 149
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS-PKEKQGIIH 319
G +++ + + S+L L + K + K RY ALV G P KQ + +
Sbjct: 150 GCVMVAKKR---SVLKQLHELLKARKGVDK-----------RYLALVGGKWPARKQQV-N 194
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K +L G ER++ + G ++++TEY +L + G S IE RP+T R HQ+R
Sbjct: 195 APLQKNVLSSG--ERMVRVELEG----KKSVTEYTLL-RRVAGASLIEARPVTGRTHQIR 247
Query: 380 VHCAEALGTPIVGDYKYG 397
VHC A G PI+GD KYG
Sbjct: 248 VHCQYA-GYPILGDDKYG 264
>gi|260752988|ref|YP_003225881.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411950|ref|YP_005621315.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|258552351|gb|ACV75297.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|335932324|gb|AEH62864.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 219
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 31/201 (15%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L + V + D+ ++++KP +P+ G L + N + A+L + + P +VHRLD
Sbjct: 4 LAKRVLFIDAEAMIIDKPAGLPVTSVRDGSLSLENYL-----ASLCFGFKRWPSIVHRLD 58
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG LL+ R + L+ FS K YWA++ G P++ +G
Sbjct: 59 RDTSGCLLLARNPKMHRRLSEAFSQGQVKKC---------------YWAILEGVPEKNEG 103
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
II PL K+ K+ I+A + G + A+T + +L G S + RP T R H
Sbjct: 104 IIDLPLLKI--SSPKSGWRIVADDKG----KRAVTHWEILAKN-KGRSLVAFRPETGRTH 156
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVH A LG PIVGD YG
Sbjct: 157 QLRVHAATGLGLPIVGDPFYG 177
>gi|386399592|ref|ZP_10084370.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM1253]
gi|385740218|gb|EIG60414.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
WSM1253]
Length = 233
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 33/197 (16%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V +RD +LV++KP +P+ KG + S DAL + P L HRLD+++S
Sbjct: 16 VLHRDGLMLVIDKPAGLPVHRGPKGGANLETSFDAL-----RFGLPRPPVLAHRLDKDTS 70
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR +++ + L LF K+ YW +V G P E +G I
Sbjct: 71 GCLVLGRHRKATASLGLLFKHGKIGKT---------------YWTIVEGGPTEDEGTIDM 115
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL ++ + G ++ Q+A+T ++V+G +G +W+ + P+T R HQLRV
Sbjct: 116 PLGRLNAERGWWQKPD-------PEGQKAITNWKVMG-RGDGLTWLAMEPVTGRTHQLRV 167
Query: 381 HCAEALGTPIVGDYKYG 397
H + A G PI GD YG
Sbjct: 168 HSS-ATGWPIFGDNIYG 183
>gi|302382659|ref|YP_003818482.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
gi|302193287|gb|ADL00859.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
Length = 248
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 23/222 (10%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKG-HLPVHNSMDALAAAALSYDYNEGPKLVHR 254
DEI +R V + D++++ KP + +G + H D L A A S + P+LVHR
Sbjct: 12 DEIAAVRSWVIHEDASVIAFAKPAGLSSQGGRIQAHTLDDLLWAFARSN--GKRPELVHR 69
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LDR++SG++L +TK + S L KA + + Y ALV +P+
Sbjct: 70 LDRDTSGVILAAKTKPAASF-------------LGKAIQ--AHRLTKTYLALVSAAPEPP 114
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
QG I+ PL + + R+ G + S+ + YR L +G +EL+P T R
Sbjct: 115 QGDINVPLVRQEIGRESYMRVAAFDTKGAQGSR---SRYRTLASSDDGA-LVELQPFTGR 170
Query: 375 KHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTS 416
HQLRVH A +G P++GD +YG + + PR+ + S
Sbjct: 171 MHQLRVHMAH-IGRPLIGDVRYGGALTAGGRAAPRLMLHAVS 211
>gi|56551401|ref|YP_162240.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ZM4]
gi|59802982|sp|O66114.2|Y505_ZYMMO RecName: Full=Uncharacterized RNA pseudouridine synthase ZMO0505;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|56542975|gb|AAV89129.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ZM4]
Length = 219
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 31/201 (15%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L + V + D+ ++++KP +P+ G L + N + A+L + + P +VHRLD
Sbjct: 4 LAKRVLFIDAEAMIIDKPAGLPVTSVRDGSLSLENYL-----ASLCFGFKRWPSIVHRLD 58
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG LL+ R + L+ FS K YWA++ G P++ +G
Sbjct: 59 RDTSGCLLLARNPKMHRRLSEAFSQGQVKKC---------------YWAILEGVPEKNEG 103
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
II PL K+ K+ I+A + G + A+T + +L G S + RP T R H
Sbjct: 104 IIDLPLLKI--SSPKSGWRIVADDKG----KRAVTHWEILAKN-KGRSLVAFRPETGRTH 156
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVH A LG PIVGD YG
Sbjct: 157 QLRVHAATGLGLPIVGDPFYG 177
>gi|58617049|ref|YP_196248.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Gardel]
gi|58416661|emb|CAI27774.1| Ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Gardel]
Length = 305
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 29/194 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSM-DALAAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y D +LV+NKP V ++G V S+ D L + + E K+VHRLD+ +SG+L
Sbjct: 92 IVYEDDNVLVINKPSGVSVQGGSKVKISISDVLDSIRIG----ESMKIVHRLDKSTSGIL 147
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
++ R L+ F D + ++Y AL G P + G I P+
Sbjct: 148 MLARNSRVSRLIMNEFKD---------------RKVKKKYLALTCGIPDDDCGQIDYPIV 192
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K K I L +N + Q+A+T + L + N ++L+P+T RKHQ+R+H +
Sbjct: 193 K------KKHGITLEKN--MSFVQQAVTMFSTLRKLPNDIGLLDLQPITGRKHQIRIHLS 244
Query: 384 EALGTPIVGDYKYG 397
+G PIVGD KYG
Sbjct: 245 H-IGCPIVGDVKYG 257
>gi|398824983|ref|ZP_10583295.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
YR681]
gi|398224350|gb|EJN10660.1| 23S RNA-specific pseudouridylate synthase [Bradyrhizobium sp.
YR681]
Length = 236
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 30/205 (14%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPL-KGHLPVHNSMDALAAAALSYDYNEGPKLV 252
ADEI L R++ +RD +L+++KP +P+ +G N D+ A L + P L
Sbjct: 11 TADEI--LARVL-HRDGLMLIIDKPAGLPVHRGPKGGANLEDSFGA--LCFGLPRPPVLA 65
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK 312
HRLD+++SG L++GR +++ + L LF K+ YW +V G P
Sbjct: 66 HRLDKDTSGCLVLGRHRKATASLGLLFKHGKIGKT---------------YWTVVEGGPA 110
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
E +G I PL ++ + G ++ Q+A+T ++V+G +G +W+ + P+T
Sbjct: 111 EDEGTIDMPLGRLNAERGWWQKPD-------PEGQKAVTNWKVMG-RGDGFTWLAMEPVT 162
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYG 397
R HQLRVH + A G PI GD YG
Sbjct: 163 GRTHQLRVH-SSATGWPIFGDNIYG 186
>gi|57239048|ref|YP_180184.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
gi|58578991|ref|YP_197203.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
gi|57161127|emb|CAH58040.1| putative ribosomal large subunit pseudouridine synthase C
[Ehrlichia ruminantium str. Welgevonden]
gi|58417617|emb|CAI26821.1| Ribosomal large subunit pseudouridine synthase C [Ehrlichia
ruminantium str. Welgevonden]
Length = 305
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 29/194 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSM-DALAAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y D +LV+NKP V ++G V S+ D L + + E K+VHRLD+ +SG+L
Sbjct: 92 IVYEDDNVLVINKPSGVSVQGGSKVKISISDVLDSIRIG----ESMKIVHRLDKSTSGIL 147
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
++ R L+ F D + ++Y AL G P + G I P+
Sbjct: 148 MLARNARVSRLIMNEFKD---------------RKVKKKYLALTCGIPDDDFGQIDYPIV 192
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K K I L +N + Q+A+T + L + N ++L+P+T RKHQ+R+H +
Sbjct: 193 K------KKHGITLEKN--MSFMQQAVTMFSTLRKLPNDIGLLDLQPITGRKHQIRIHLS 244
Query: 384 EALGTPIVGDYKYG 397
+G PIVGD KYG
Sbjct: 245 R-IGCPIVGDVKYG 257
>gi|365858930|ref|ZP_09398824.1| pseudouridine synthase, RluA family, partial [Acetobacteraceae
bacterium AT-5844]
gi|363713362|gb|EHL96989.1| pseudouridine synthase, RluA family, partial [Acetobacteraceae
bacterium AT-5844]
Length = 238
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 98/202 (48%), Gaps = 41/202 (20%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAA-----AALSYDYNEGPKLVHRLDRES 259
+ R +LVL+KP LPVH A+ L++ P+ HRLD ++
Sbjct: 24 ILLRTDTVLVLDKP------AGLPVHAGPRGGASLESWLPLLAFGKKRIPQPAHRLDTDT 77
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG-SPKEKQGII 318
+G L++GRTK +++ L LF++ K+ YWA++ G P E G I
Sbjct: 78 AGCLVLGRTKPALAELGALFAEGRAEKT---------------YWAVLRGPGPAEGTGRI 122
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEA---SQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
PL KV A +E Q A+T +RVLG G W+ELRP T R
Sbjct: 123 DLPLRKV---------STAAHGWRMETHPEGQPAITLWRVLG-RGPGLCWVELRPRTGRT 172
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVHCA ALG PI+GD YG
Sbjct: 173 HQLRVHCA-ALGFPILGDPFYG 193
>gi|88608500|ref|YP_506438.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
sennetsu str. Miyayama]
gi|88600669|gb|ABD46137.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
sennetsu str. Miyayama]
Length = 305
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 27/200 (13%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++++ L+ Y D +L ++KP P++ + S+D A +++ +Y ++VHRLD+
Sbjct: 86 VEFIASLMLYEDENVLAISKPFGFPVQSGYGITASIDN-AMKSINPEY----RVVHRLDK 140
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++G+L+ +T ++ L LFS+ KS Y A+VIG KEK+G+
Sbjct: 141 HTTGVLIFAKTLDAARELWRLFSNRLVKKS---------------YLAIVIGELKEKKGV 185
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ ++KVL K E ++ N G + A+T++ V+ N S IEL PLT RKHQ
Sbjct: 186 VDCYINKVLF---KGEEVMQCNNIG--NGEHAITQFHVIKKFKN-TSLIELFPLTGRKHQ 239
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+R A ++G P++ D KYG
Sbjct: 240 IRSQMA-SIGHPVLNDGKYG 258
>gi|182680419|ref|YP_001834565.1| pseudouridine synthase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182636302|gb|ACB97076.1| pseudouridine synthase [Beijerinckia indica subsp. indica ATCC
9039]
Length = 234
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 26/205 (12%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
D RL+ YRD +LVL+KP +P+ ++++A L + P L HRLDR
Sbjct: 4 FDLQARLL-YRDGMMLVLDKPAGIPVHKGPKGGDNLEAFFDD-LRFGLPRRPALAHRLDR 61
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG L++GR +++ L LF +K+ YW++V+G P E +G+
Sbjct: 62 DTSGCLVLGRHHKALEKLGLLFKQGKIAKT---------------YWSVVLGGPTEDEGL 106
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I PL + + G ++ A T + VL + C + L+PLT R HQ
Sbjct: 107 IDLPLGRRDAERGWWMKVD-------PEGAPAQTRWTVLARSADHC-LLALKPLTGRTHQ 158
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHR 402
LRVHCA A G PI+GD YG H+
Sbjct: 159 LRVHCA-AQGFPILGDPVYGPADHK 182
>gi|254420499|ref|ZP_05034223.1| RNA pseudouridine synthase family [Brevundimonas sp. BAL3]
gi|196186676|gb|EDX81652.1| RNA pseudouridine synthase family [Brevundimonas sp. BAL3]
Length = 241
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 23/216 (10%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKG-HLPVHNSMDALAAAALSYDYNEGPKLVHR 254
DEI +R V + D+ ++ +KP + +G + H D L A A S + P+LVHR
Sbjct: 12 DEIAAVRSWVIHEDAHVIAFSKPSGLSSQGGRIQAHTLDDLLWAFARSN--GKRPELVHR 69
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LDR++SG++L +TK + L K+L ++Y AL+ +P+
Sbjct: 70 LDRDTSGVILAAKTKPAAGFL---------GKALQ------MRRFRKQYLALLSAAPEPA 114
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
G I APL + + R++ G + SQ + YR L G +EL PLT R
Sbjct: 115 SGTIDAPLRREEIGRESYMRVVAFDAPGAQGSQ---SRYRTLAANDQGA-VVELEPLTGR 170
Query: 375 KHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
HQLRVH A LG P++GD +YG + PR+
Sbjct: 171 MHQLRVHMAH-LGRPLIGDVRYGGALTTEVGPAPRL 205
>gi|149566907|ref|XP_001518233.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like, partial [Ornithorhynchus anatinus]
Length = 301
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 31/207 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSM-DALAAAALSYD--YNEGPKLVHRLDRESSG 261
+ Y+D ++V++KP +P+ G + + D L A D E L HRLD+E++G
Sbjct: 36 ILYQDKELVVIDKPYGLPVHGGPGIQRCITDVLPILAKMLDGFRAEPLHLCHRLDKETTG 95
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
++++ R+++ + F K + ++K YWA+ +G P +G++ P
Sbjct: 96 VMVLARSRDVAHQVQGQF----KMRQVAKT-----------YWAVCVGVPVHSEGVVDIP 140
Query: 322 L-SKVLLDDGKTERIILAQNSGLEA-----------SQEAMTEYRVLGPMINGCSWIELR 369
+ K + + ++ LA N LE + A+T+YR L + C+ +ELR
Sbjct: 141 IVEKEVQSQQQHHKMTLAPNYHLEDGKMVKRRVSRDADSAVTQYRTLSGTTS-CTLLELR 199
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKY 396
P+T KHQLRVH A LG PI+GD+KY
Sbjct: 200 PITGVKHQLRVHLAFGLGCPILGDHKY 226
>gi|318043192|ref|NP_001187897.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
punctatus]
gi|308324268|gb|ADO29269.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
punctatus]
Length = 386
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 154/317 (48%), Gaps = 57/317 (17%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISK-RYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
K++ + +P A+ +PVS V+ +++ R T +++PN L + + Y+D ++
Sbjct: 69 KLRREKEEKPDAKNKVPVSPVQRNVAELRQLTQQLQSVHPNVFA-KALSKSILYQDQNLI 127
Query: 214 VLNKPPKVPLKGHLPVHNSM-DALAAAALSYDYNEGPKLVH---RLDRESSGLLLMGRTK 269
+NKP VP+ + NS+ ++L A D +G +H L+++++G+L + RT+
Sbjct: 128 AINKPYGVPVYSTGGIGNSIAESLPVLAKIIDCTKGGSKLHVCYNLEKDTTGVLFLARTE 187
Query: 270 ESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL-SKVLLD 328
E+ + L K RY + +G P +G+I P+ K ++
Sbjct: 188 ETAERIHNLIRSHQAEK---------------RYMVITVGVPVPSEGVIDIPIIEKEVMG 232
Query: 329 DGKTERIILA-------QNSGL------EASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
D ++ L+ + GL +Q A+T Y+VL +GCS +EL+P+T K
Sbjct: 233 DQHHFKMGLSPLYRPTEEGDGLVRVRANRQAQSAVTHYKVLDSS-SGCSLVELQPVTGVK 291
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSV 435
HQLRVH A AL PI+GD+KY W ++ P KL P+G+ + G
Sbjct: 292 HQLRVHMALALACPILGDHKY-----THWNKL----------APQKL--PEGVLRRLGLE 334
Query: 436 LSK---VPLLHLHCREL 449
SK +P LHLH R++
Sbjct: 335 QSKTRHLP-LHLHVRQI 350
>gi|383768639|ref|YP_005447702.1| hypothetical protein S23_03670 [Bradyrhizobium sp. S23321]
gi|381356760|dbj|BAL73590.1| hypothetical protein S23_03670 [Bradyrhizobium sp. S23321]
Length = 233
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 106/204 (51%), Gaps = 28/204 (13%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
ADEI L R++ +RD +LV++KP +P+ +++A + AL + P L H
Sbjct: 8 TADEI--LARVL-HRDGLMLVIDKPSGLPVHRGPKGGANLEA-SFGALCFGLPRPPVLAH 63
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLD+++SG L++GR +++ + L LF K+ YW +V G P E
Sbjct: 64 RLDKDTSGCLVLGRHRKATASLGLLFKHGKIGKT---------------YWTVVEGGPAE 108
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
+G I PL ++ + G ++ Q+A+T ++V+G G +W+ + P+T
Sbjct: 109 DEGTIDMPLGRLNAERGWWQKPD-------PDGQKAVTNWKVMG-RGEGLTWLAMEPVTG 160
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQLRVH + A G PI GD YG
Sbjct: 161 RTHQLRVH-SSATGWPIFGDNIYG 183
>gi|347761118|ref|YP_004868679.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter xylinus NBRC 3288]
gi|347580088|dbj|BAK84309.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Gluconacetobacter xylinus NBRC 3288]
Length = 251
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 37/201 (18%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAA----LSYDYNEGPKLVHRLDRESS 260
V YRD+ +VL+KPP LPVH+ + L + GP L HRLD++++
Sbjct: 21 VLYRDNRFVVLDKPPG------LPVHSGRAGGPSVEDWFPLLSRHRNGPWLAHRLDQDTA 74
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++ K+++ F+ K+ YWA+V G+P G++ A
Sbjct: 75 GCLVVALRKQALVAAQECFAAGRVDKT---------------YWAIVQGAPAGPSGVVDA 119
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC----SWIELRPLTCRKH 376
PL++V + G+ R+ +A++ Q A T +RVL + SW+EL T R H
Sbjct: 120 PLARV--EQGRQWRMQVARD-----GQPARTRWRVLATGRDDAGHPISWLELVLETGRTH 172
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q R HCA ALG PI+GD +YG
Sbjct: 173 QARAHCA-ALGCPILGDGRYG 192
>gi|190570815|ref|YP_001975173.1| ribosomal large subunit pseudouridine synthase C [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213019659|ref|ZP_03335464.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
gi|190357087|emb|CAQ54492.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Culex quinquefasciatus Pel]
gi|212994700|gb|EEB55343.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
Length = 307
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 124/288 (43%), Gaps = 51/288 (17%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQME-CANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
+++ F ++ S I+ KGL++++ C V GQ IR + E +
Sbjct: 20 YIRRIFPNLKQSAIEKSLRKGLIKVDNCTAKSSDRVSSGQTIMIRYLDYIENTNSDCKY- 78
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
N ++ LR + Y D IL +NKP V ++G + V
Sbjct: 79 ------------------------NEKLVNLLRENILYEDEYILAINKPAGVIVQGGIKV 114
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
S+ L E K+VHRLDR++SG+++ R L F K + +
Sbjct: 115 KISISDLLDQIRE---REIFKIVHRLDRDTSGVIIFARNASVAKYLMEEF----KGRRIK 167
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
K Y AL G P + G I PL K + E++++ ++S Q A
Sbjct: 168 KT-----------YLALTFGIPSKDNGTIDYPLVKKYI--SGQEKVVVDEDS----PQNA 210
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
T + ++ + + ++++L+P+T R HQLR H A + PI+GD KYG
Sbjct: 211 TTHFLIIARLKHNVAYLKLQPITGRTHQLRAHLAH-INCPILGDGKYG 257
>gi|73666929|ref|YP_302945.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia canis
str. Jake]
gi|72394070|gb|AAZ68347.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia canis
str. Jake]
Length = 308
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 49/280 (17%)
Query: 122 SVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRI-- 179
S+++ KG+V ++ A K+K+N ++ G I++ + + G
Sbjct: 30 SLVEKFLRKGIVLLDNA----------------KVKSNTRIKTGNVIYIKCNTIIGEEIH 73
Query: 180 SKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAA 239
+KR S L I+ + + Y D +L++NKP V ++G V S+ +
Sbjct: 74 TKRICKTDSSYL------INLISNSILYEDDDVLIINKPAGVSVQGGTKVRISISDILDK 127
Query: 240 ALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAM 299
E ++VHRLD+++SG+L++ R + L+ F K++ + K
Sbjct: 128 IRD---GESMRIVHRLDKDTSGILMLARNARASRLIMHEF----KNRRVEK--------- 171
Query: 300 YQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
+Y AL G PK G I+ ++K K +G QEA+T + VL +
Sbjct: 172 --KYLALTQGIPKNDVGEINHSITK------KKHNFYENIGTGNSIFQEAITSFFVLKKL 223
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWF 399
+EL+P T RKHQ+R+H + +G I+GD KYG F
Sbjct: 224 PYDIGLLELKPKTGRKHQIRIHLSH-IGCSIIGDKKYGKF 262
>gi|373450069|ref|ZP_09542141.1| 23S rRNA pseudouridylate synthase [Wolbachia pipientis wAlbB]
gi|371932731|emb|CCE77129.1| 23S rRNA pseudouridylate synthase [Wolbachia pipientis wAlbB]
Length = 307
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 130/288 (45%), Gaps = 51/288 (17%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQME-CANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
+++ F ++ S I+ KGL++++ C V GQ IR +
Sbjct: 20 YIRRIFPNLKQSTIEKSLRKGLIKVDNCKAKSSDKVNSGQTITIRYL------------- 66
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
+E S+R N ++ LR + Y D IL +NK V ++G + V
Sbjct: 67 ---DYIENTNSER---------KYNEKLVNLLRENILYEDEYILAINKSAGVIVQGGVKV 114
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
S+ L E K+VHRLDR++SG+++ R + S+ +L + K + +
Sbjct: 115 KISISDLLDQIRE---REIFKIVHRLDRDTSGVIIFAR---NASVAKYLMEEF-KGRRIK 167
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
K Y AL G P + G I PL K + E++++ ++S Q A
Sbjct: 168 KT-----------YLALTFGIPSKDNGTIDYPLVKKYI--SGQEKVVVDEDS----PQNA 210
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
T + ++ + + ++++L+P+T R HQLR H A + PI+GD KYG
Sbjct: 211 TTHFSIIARLKHNVAYLKLQPITGRTHQLRAHLAH-INCPILGDGKYG 257
>gi|320168809|gb|EFW45708.1| pseudouridine synthase [Capsaspora owczarzaki ATCC 30864]
Length = 748
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 137/303 (45%), Gaps = 65/303 (21%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAA----ALSYDYNEGPKLV 252
E D +R+ V ++D I+V+NKP + + + + +AL + AL ++ P +V
Sbjct: 357 ERDRIRQCVLHKDQHIIVINKPAGLSV-----MADGFEALDLSRLLPALQFEAPCLPHIV 411
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK 312
HRLD+ ++G LL+ R +L+ F K+ Y A+V G+P
Sbjct: 412 HRLDKNTTGALLLARNPRVARILSRAFQKQRIGKT---------------YTAIVAGAPP 456
Query: 313 EKQGIIHAPLSKVLLDD----GKTERIILAQNSGLEASQ-----------EAMTEYRVLG 357
GII+ PL + G T +L ++ + A++ A+T + V+G
Sbjct: 457 FDSGIINCPLEVISATTARKVGVTPGTVLCRHDLVYANETSYLRTRRDALSAITHFSVVG 516
Query: 358 PMING-CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTS 416
G + IE P++ RKHQLRVH ++ LG PI+GD +YG +
Sbjct: 517 RSSRGPAALIEFVPMSGRKHQLRVHSSKYLGHPILGDNRYG------------------N 558
Query: 417 GKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPS 476
G P +L P L + + V L LH R + +L ++KP L +A +P+
Sbjct: 559 GCPVELHEP--LGIAGWDAKNDVVKLQLHARSIVVPSLDQQRNNKP-----LVVLAPLPA 611
Query: 477 HMK 479
HMK
Sbjct: 612 HMK 614
>gi|329889164|ref|ZP_08267507.1| RNA pseudouridylate synthase family protein [Brevundimonas diminuta
ATCC 11568]
gi|328844465|gb|EGF94029.1| RNA pseudouridylate synthase family protein [Brevundimonas diminuta
ATCC 11568]
Length = 241
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 21/215 (9%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
DEI +R V + D+ ++ NKP + +G N++D L A + + P+LVHRL
Sbjct: 12 DEIAAVRSWVVHEDAHLIAFNKPSGLSSQGGRIQANTLDDLLWA-FARSNGKRPELVHRL 70
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DR++SG++L +TK + K+ + K + Y ALV +P+ K
Sbjct: 71 DRDTSGVILAAKTKPAAGFF-------GKAMQMRK--------FQKTYLALVAAAPEPKS 115
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G I + L + + R++ G +Q A + YR L +G +EL P T R
Sbjct: 116 GRITSALRREEIGRESYMRVVDFDAPG---AQGAASGYRTLASSEDGA-VVELSPETGRM 171
Query: 376 HQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
HQLRVH A ++G P+VGD +YG + + PR+
Sbjct: 172 HQLRVHMA-SIGRPLVGDVRYGGALTFAGRAAPRL 205
>gi|254796911|ref|YP_003081748.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
risticii str. Illinois]
gi|254590147|gb|ACT69509.1| ribosomal large subunit pseudouridine synthase C [Neorickettsia
risticii str. Illinois]
Length = 305
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 108/200 (54%), Gaps = 27/200 (13%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
+ ++ L+ Y D +L ++KP P++ + S+D A +++ +Y ++VHRLD+
Sbjct: 86 VKFIASLMLYEDENVLAIDKPFGFPVQSGYGITTSIDN-AMKSINPEY----RVVHRLDK 140
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++G+L+ +T ++ L LFS+ + +RY A+VIG KEK+G
Sbjct: 141 HTTGVLIFAKTLDAARELWRLFSN---------------RLVKKRYLAIVIGELKEKKGA 185
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ ++KVL K E ++ + G + A+T++ V+ N S IEL PLT RKHQ
Sbjct: 186 VDCYINKVLF---KGEEVMQCNHIG--NGEHAITQFHVIKKFKNA-SLIELFPLTGRKHQ 239
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+R A ++G P++ D KYG
Sbjct: 240 IRSQMA-SIGHPVLNDGKYG 258
>gi|326438031|gb|EGD83601.1| hypothetical protein PTSG_04209 [Salpingoeca sp. ATCC 50818]
Length = 293
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 43/219 (19%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY----------------- 243
L R V + D +L +NK P++ ++G + + A AL Y
Sbjct: 13 LWRAVLFEDRHVLCINKWPQLVVQG-----GTNEPSIARALPYLAQELPPKGSSGRKLVG 67
Query: 244 -DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR 302
+++ P +VHRLD++++G+ ++ + + +L LF++ K R
Sbjct: 68 PNHDFAPSIVHRLDKDTTGVTVIAKHAGAARILNNLFAEHQVDK---------------R 112
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERII----LAQNSGLEASQEAMTEYRVLGP 358
Y A+ +G+P ++G + P+ D G T I + S L +A T YRV+
Sbjct: 113 YLAMTLGAPYPEKGRLDFPIG-TNKDTGATACITPTMSADERSALTNVVDAATNYRVIDN 171
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ + + ++L+P T RKHQLRVHCA+AL PIVGD KYG
Sbjct: 172 IDHHIALVDLKPHTGRKHQLRVHCAQALHCPIVGDNKYG 210
>gi|421595439|ref|ZP_16039476.1| hypothetical protein BCCGELA001_00447 [Bradyrhizobium sp.
CCGE-LA001]
gi|404272451|gb|EJZ36094.1| hypothetical protein BCCGELA001_00447 [Bradyrhizobium sp.
CCGE-LA001]
Length = 241
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 99/197 (50%), Gaps = 33/197 (16%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V +RD +LV+NKP +P+ KG + +S DAL + P L HRLD+++S
Sbjct: 18 VLHRDGLMLVINKPAGLPVHRGPKGGPNLEDSFDAL-----RFGLPRPPVLAHRLDKDTS 72
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR +++ + L LF K+ YW +V G E +G I
Sbjct: 73 GCLVLGRHRKATASLGLLFKHGKIGKT---------------YWTVVEGGHIENEGTIDM 117
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL ++ + G ++ Q+A+T ++V+G G +W+ + P+T R HQLRV
Sbjct: 118 PLGRLNAERGWWQKPD-------PEGQKAITNWKVMG-RGEGLTWLAMEPVTGRTHQLRV 169
Query: 381 HCAEALGTPIVGDYKYG 397
H A A G PI GD YG
Sbjct: 170 HSA-ATGWPIFGDNIYG 185
>gi|325268497|ref|ZP_08135127.1| ribosomal large subunit pseudouridine synthase A [Prevotella
multiformis DSM 16608]
gi|324989025|gb|EGC20978.1| ribosomal large subunit pseudouridine synthase A [Prevotella
multiformis DSM 16608]
Length = 568
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 101/214 (47%), Gaps = 41/214 (19%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
+ Y D ++ V+ KPP VP KG P S+ + + P +VHRLD +SG
Sbjct: 356 ILYEDDSLAVVAKPPGLLSVPGKGRQPSVYSL-----LKERWQRSGAPYMVHRLDMATSG 410
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK----QGI 317
LL++ RT E+ L F A + +RY AL+ GS E+ +G
Sbjct: 411 LLVVARTAEAHKALQAQF---------------AARTVQKRYVALLPGSFPEQRFPAEGR 455
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE-----LRPLT 372
I PLS DD +R+ LE + A+TEYRV G G E L PLT
Sbjct: 456 IELPLSPC-PDDRPRQRV------DLEKGKPAITEYRVAGRTKYGKEGREAVKIILHPLT 508
Query: 373 CRKHQLRVHCA--EALGTPIVGDYKYGWFVHRRW 404
R HQLR+HCA + LGTPI+GD YG R W
Sbjct: 509 GRTHQLRMHCAHPDGLGTPIIGDSLYGQRAGRLW 542
>gi|414342374|ref|YP_006983895.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans H24]
gi|411027709|gb|AFW00964.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans H24]
Length = 243
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 95/186 (51%), Gaps = 28/186 (15%)
Query: 212 ILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKES 271
LVLNKP L H P ++ D++ +S+ GP L HRLD ++SG LL+ R K +
Sbjct: 40 FLVLNKP--AGLAAH-PGPSTQDSVETRLVSHPRG-GPWLAHRLDADTSGCLLIARRKTA 95
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK 331
+ F + + + YW +V G+P E +G I APL + G
Sbjct: 96 LLEAQAAFQN---------------RQVRKLYWTIVEGTPAENEGEISAPLLRQSNPSGW 140
Query: 332 TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIV 391
R+I+ A+T +RVLG NG SW+EL LT R HQ R+HCA +LGTPIV
Sbjct: 141 --RMIVDPKG-----DAAVTRWRVLG-RANGRSWLELELLTGRTHQARIHCA-SLGTPIV 191
Query: 392 GDYKYG 397
GD YG
Sbjct: 192 GDRVYG 197
>gi|99034362|ref|ZP_01314387.1| hypothetical protein Wendoof_01000811, partial [Wolbachia
endosymbiont of Drosophila willistoni TSC#14030-0811.24]
Length = 264
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 31/212 (14%)
Query: 192 NPNADE------IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
N N+D ++ LR + Y D IL +NKP V ++G + V SM L
Sbjct: 28 NANSDRKYNEKLVNLLRENILYEDEYILAINKPAGVIVQGGVKVKISMSDLLDQIRE--- 84
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
E K+VHRLDR++SG+++ R L F K + + K Y A
Sbjct: 85 GETFKIVHRLDRDTSGVIIFARNANVARYLMEEF----KGRRVKKT-----------YLA 129
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
L G P + G I PL K + E++++ +NS Q A T + ++ + ++
Sbjct: 130 LTSGIPSKDSGTIDYPLVKKYV--SGQEKVVVDENS----PQNATTHFSIIAKSKHNVAY 183
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
++L+P+T R HQLR H A + PI+GD KYG
Sbjct: 184 LKLQPITGRTHQLRAHLAH-INCPILGDGKYG 214
>gi|291239041|ref|XP_002739435.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 467
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 32/209 (15%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSM-DALAAAALSYDYNEGPKL--VHRLDR 257
L + Y ++ ++KP +P G + N++ D L A D PKL VHRLD+
Sbjct: 207 LHERIIYDHDDVIAIDKPYGLPSHGGPTITNNVNDTLTILAKLID-KSLPKLYLVHRLDK 265
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++L+ +++ L LF + + +RYW L +G P+ +G+
Sbjct: 266 ETTGVMLLAKSEIIAKQLNALFRK---------------KMVIKRYWVLTVGVPEPSEGV 310
Query: 318 IHAPL--------SKVLL--DDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE 367
+ P+ +++LL D G + ++ +SG A+ A+T ++VL N C+ +E
Sbjct: 311 VDIPMEEGEVAGKNRMLLRPDYGLVYKNLIKSSSGKGAT--ALTNFKVLASEGN-CALVE 367
Query: 368 LRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
L+P T KHQ+R H A LG PI+GD+KY
Sbjct: 368 LQPETGIKHQIRCHLASGLGCPILGDHKY 396
>gi|357975814|ref|ZP_09139785.1| pseudouridylate synthase [Sphingomonas sp. KC8]
Length = 223
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 105/232 (45%), Gaps = 39/232 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D+ LV++KP +P+ G L V N +D+L + + P +VHRLDR++S
Sbjct: 6 VLFIDAEALVVDKPAGLPVTEVRDGSLSVENHLDSL-----RFGFQRRPAIVHRLDRDTS 60
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEA--MYQRYWALVIGSPKEKQGII 318
G LL+ R ++ K +N A E + + YWA+V P + G I
Sbjct: 61 GCLLLARNPKA-----------------QKRYNAAFETGQVQKTYWAVVSPVPADDSGTI 103
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
PL KV + I+ + + + T +R L +G + IE P T R HQ+
Sbjct: 104 DMPLLKVSTREAGWRMIVDPRG------KASRTHWRKLAEA-DGRALIEFSPETGRTHQI 156
Query: 379 RVHCAEALGTPIVGDYKYGWFVHRRWKQ----MPRVDIEPTSGKPYKLRRPD 426
RVH A LG PIVGD YG + Q R P GKP + + D
Sbjct: 157 RVHAATGLGAPIVGDPIYGTGSQEKGGQPMLLHARTLTVPREGKPPIVAKAD 208
>gi|16125533|ref|NP_420097.1| ribosomal large subunit pseudouridine synthase D [Caulobacter
crescentus CB15]
gi|221234280|ref|YP_002516716.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
gi|13422619|gb|AAK23265.1| ribosomal large subunit pseudouridine synthase D [Caulobacter
crescentus CB15]
gi|220963452|gb|ACL94808.1| ribosomal large subunit pseudouridine synthase C [Caulobacter
crescentus NA1000]
Length = 270
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 23/203 (11%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
DEI + V Y D I+VLNKP + +G +++D L A + PKLVHRL
Sbjct: 27 DEIAAAQSWVLYEDETIIVLNKPAGLSSQGGRIKAHTLDDLLWA-FARPNRPRPKLVHRL 85
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DR++SG++L +TK + ++L KS Y A+V G+P+ K
Sbjct: 86 DRDTSGVILTAKTKPAAAMLGKALEAKRFRKS---------------YLAIVAGAPEPKG 130
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCR 374
G+I +PL + + R+ + E ++ + YR L NG + +EL P T R
Sbjct: 131 GMIDSPLRRESIGREAYMRVCEPDHPDAETAR---SRYRTLA--HNGLAALVELSPDTGR 185
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQLRVH A ++G P+ GD +YG
Sbjct: 186 MHQLRVHMA-SIGRPLAGDSRYG 207
>gi|316931819|ref|YP_004106801.1| pseudouridine synthase [Rhodopseudomonas palustris DX-1]
gi|315599533|gb|ADU42068.1| pseudouridine synthase [Rhodopseudomonas palustris DX-1]
Length = 300
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 109/254 (42%), Gaps = 76/254 (29%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHR 254
D ++ V YRD +LV++KPP +P+ KG + S DAL Y P L HR
Sbjct: 17 DEIQARVLYRDGLMLVIDKPPGLPVHRGPKGGPNLEASFDAL-----RYGLPRPPVLAHR 71
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LDR++SG L++GR +++ + L LF SK+ YWA+V G P E
Sbjct: 72 LDRDTSGCLVLGRHRKATATLGLLFKHSRISKT---------------YWAIVEGGPAED 116
Query: 315 QGIIHAPLSKVLLDDGKTERI---------------------ILAQNSGL---------- 343
+G I P+ K+ + G ++I + SG+
Sbjct: 117 EGSIDLPIGKLNAERGWWQKIDQESGLPSLTKWRVMGRSSPPVCGDGSGVGAHSGTPSLG 176
Query: 344 --------EASQEAMTE------------YRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
+A + A++ + P +W+ L P+T R HQLRVHCA
Sbjct: 177 RPHPGPLPQAGEGALSAGAKGDDLSRKPGAKSGAPPPAQLTWLALEPITGRTHQLRVHCA 236
Query: 384 EALGTPIVGDYKYG 397
A+G PI GD YG
Sbjct: 237 -AMGWPIFGDNIYG 249
>gi|338972397|ref|ZP_08627772.1| pseudouridine synthase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234561|gb|EGP09676.1| pseudouridine synthase [Bradyrhizobiaceae bacterium SG-6C]
Length = 255
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 124/282 (43%), Gaps = 79/282 (28%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V +RD +LV++KP + + KG + S DAL Y P L HRLDR++S
Sbjct: 15 VLHRDGLMLVIDKPAGIAVHKGPKGGPNLEASFDAL-----RYGLPRPPVLAHRLDRDTS 69
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR +++ + L LF K+ YWA+V G P +G I
Sbjct: 70 GCLVLGRHRKATASLGLLFKHGKIDKT---------------YWAVVEGGPDASEGEIDI 114
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMIN----GCSWIELRPLTCRKH 376
PL ++ + G ++ +GL + T +RVLG + +W+ + P+T R H
Sbjct: 115 PLGRLDAERGWWQK---PDPNGLPSK----TVWRVLGRGTDAGGAALTWLAMEPITGRTH 167
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVL 436
QLRVHC+ A G PIVGD YG PR EP+
Sbjct: 168 QLRVHCS-ASGWPIVGDNIYG--------NGPRFG-EPS--------------------- 196
Query: 437 SKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
LHLH RE+ + P +KP +R VA P H+
Sbjct: 197 -----LHLHAREI----VIPLSKNKPP----VRVVAPAPVHL 225
>gi|88658198|ref|YP_507572.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
chaffeensis str. Arkansas]
gi|88599655|gb|ABD45124.1| ribosomal large subunit pseudouridine synthase C [Ehrlichia
chaffeensis str. Arkansas]
Length = 307
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 26/199 (13%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+R V Y D +L++NKP + ++G V S+ + E K+VHRLD+++S
Sbjct: 89 IRNSVVYEDDDVLIINKPAGISVQGGTKVKISISDIVDKIRD---GESMKIVHRLDKDTS 145
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+L++ R L+ F K++ + K +Y AL G PK G I+
Sbjct: 146 GILMLARNARISRLIMHEF----KNRRVEK-----------KYLALTQGIPKNDIGQINH 190
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
+ K +R + QEA+T + VL + G +EL+P+T RKHQ+R+
Sbjct: 191 SIIK-------NKRSLSLDKVNDSYLQEAVTSFSVLKKLPYGIGLLELKPITGRKHQIRI 243
Query: 381 HCAEALGTPIVGDYKYGWF 399
H + +G I+GD KYG F
Sbjct: 244 HLSH-IGCSIIGDKKYGKF 261
>gi|453331600|dbj|GAC86514.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
thailandicus NBRC 3255]
Length = 243
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 97/186 (52%), Gaps = 28/186 (15%)
Query: 212 ILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKES 271
LVLNKP + + P ++ D++ +S+ GP L HRLD ++SG LL+ R K
Sbjct: 40 FLVLNKPAGLAVH---PGPSTQDSVETRLVSHPRG-GPWLAHRLDADTSGCLLIARRK-- 93
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK 331
+LL + N+ + + YW +V G+P E +G I APL + G
Sbjct: 94 TALLEAQVAFQNRQ-------------VRKLYWTVVEGTPAEDEGEISAPLLRQSNPSG- 139
Query: 332 TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIV 391
R+I+ A+T +RVLG NG SW+EL LT R HQ R+HCA +LGTPIV
Sbjct: 140 -WRMIVDPKG-----DAAVTRWRVLG-RANGRSWLELELLTGRTHQARIHCA-SLGTPIV 191
Query: 392 GDYKYG 397
GD YG
Sbjct: 192 GDRVYG 197
>gi|353328603|ref|ZP_08970930.1| ribosomal large subunit pseudouridine synthase C, putative
[Wolbachia endosymbiont wVitB of Nasonia vitripennis]
Length = 307
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 126/288 (43%), Gaps = 51/288 (17%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQME-CANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF 169
+++ F ++ S I+ KGL++++ C V GQ IR +
Sbjct: 20 YIRRIFPNLKQSAIEKSLRKGLIKVDNCTAKSSDRVNSGQTITIRYL------------- 66
Query: 170 LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV 229
+E S R N ++ LR + Y D IL +NK + ++G + V
Sbjct: 67 ---DYIENTNSDR---------KYNEKLVNLLRDNILYEDEYILAINKSAGIIVQGGIKV 114
Query: 230 HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLS 289
S ++ E K+VHRLDR++SG+++ R L F K + +
Sbjct: 115 KIS---ISXXLDQIRXGEVFKIVHRLDRDTSGVIIFARNASVARYLMEEF----KGRRIK 167
Query: 290 KAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEA 349
K Y AL G P + GII PL K + E++++ ++S Q A
Sbjct: 168 KT-----------YLALTSGIPSKDNGIIDYPLVKKYI--SGQEKVVIDEDS----PQNA 210
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
T + ++ + + ++++L+P+T R HQLR H A + PI+GD KYG
Sbjct: 211 TTHFSIISRLKHNVAYLKLQPITGRTHQLRAHLAH-INCPILGDGKYG 257
>gi|158426220|ref|YP_001527512.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
gi|158333109|dbj|BAF90594.1| pseudouridine synthase [Azorhizobium caulinodans ORS 571]
Length = 319
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 29/195 (14%)
Query: 207 YRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
+RD +LVL+KP +P+ KG +H+ ++ L + P+L HRLD+++SG
Sbjct: 88 HRDGMVLVLDKPAGLPVHPGPKGGETLHDHLNGL-----RFGLPRAPELAHRLDKDTSGC 142
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L++GR ++++LL LF++ K+ Y A+ G+P E+ G I PL
Sbjct: 143 LVLGRHGKALALLNRLFAEGQADKT---------------YVAVTRGAPAEETGRIDQPL 187
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
+K G + + G EA+T++RVL G + + L P+T R HQLR H
Sbjct: 188 AKRSPHRGWWMQAV---PKGTPGGLEAVTDWRVLA-RTEGLAVMALSPVTGRTHQLRAHL 243
Query: 383 AEALGTPIVGDYKYG 397
+ +G PI+GD YG
Sbjct: 244 SH-IGFPILGDSIYG 257
>gi|327282066|ref|XP_003225765.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Anolis carolinensis]
Length = 361
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 43/218 (19%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSM-DAL-AAAALSYDYNEGP-KLVHRLDR 257
L++ V +++S I+V+NKP +P+ G V + D L A + Y P L HRLD+
Sbjct: 88 LKKGVLFQNSEIVVINKPYGLPVHGGPKVKTCITDVLPTLAKMLYGMKAEPLHLCHRLDK 147
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ R ++ + LF K++ + K +YWA+ +G PK +G+
Sbjct: 148 ETTGVMVLARDQDIAHKVQELF----KTRQVEK-----------KYWAVCVGHPKPTEGL 192
Query: 318 IHAPLS-----------KVLL--------DDGKTERIILAQNSGLEASQEAMTEYRVLGP 358
+ P+ K+ L +DGKT ++ +++ A+T YRVL
Sbjct: 193 VDIPIVEKEVESHQSHFKMALAPNYYMSHEDGKTFKVRQHRDA-----HSAVTRYRVLSS 247
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ S++EL P+T KHQLRVH A LG PI+GD+KY
Sbjct: 248 CSSC-SFLELHPITGVKHQLRVHMAFGLGCPILGDHKY 284
>gi|209963797|ref|YP_002296712.1| RNA pseudouridine synthase [Rhodospirillum centenum SW]
gi|209957263|gb|ACI97899.1| RNA pseudouridine synthase, putative [Rhodospirillum centenum SW]
Length = 242
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 37/203 (18%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAA-----LSYDYNEGPKLVHRL 255
+R V +RD+ +L+L+KP LPVH + ++++ E P+L HRL
Sbjct: 8 IRARVLHRDADVLILDKPHG------LPVHYGTKTVEHLEQYLPWIAFEREEPPRLAHRL 61
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG L++ R E + L LF + K+ YWA+V+G P+
Sbjct: 62 DKDTSGCLVLARDAEVAARLGRLFLHGHVGKT---------------YWAVVLGRPRGDA 106
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCR 374
G I PL KV + ++++ + + A+T++R+L +G SW+EL P T R
Sbjct: 107 GRIDLPLLKVHIP--GCSKVVVDPD-----GKPALTDWRLLA--TDGRLSWLELTPRTGR 157
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQLR HCA + G PI+GD YG
Sbjct: 158 MHQLRAHCACS-GFPILGDPIYG 179
>gi|393723951|ref|ZP_10343878.1| pseudouridine synthase [Sphingomonas sp. PAMC 26605]
Length = 230
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 36/227 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D LV++KP +P+ G L + N +D L ++ + P VHRLDR++S
Sbjct: 6 VLFLDGEALVIDKPAGLPVDRPRDGSLSLENHLDGL-----TFAFKRWPVPVHRLDRDTS 60
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ + L F + +RY A++ G + + G+I
Sbjct: 61 GCLLLSRNPKAHARLQQAFEQ---------------GLVRKRYLAVLEGVVEGESGLIDL 105
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+KV ++ T ++ G + S+ + T +RVL + +G S++E P T R HQ+RV
Sbjct: 106 ALAKVSTEE--TGWRMVGDPLGAKGSKASRTAWRVL-SIKDGRSFVEFIPETGRTHQIRV 162
Query: 381 HCAEALGTPIVGDYKYG---------WFVHRRWKQMPRVDIEPTSGK 418
H AEALG +VGD YG +H +PRV EP K
Sbjct: 163 HAAEALGAAVVGDPIYGNGTKANGAATLLHAAELTVPRVGKEPIIAK 209
>gi|393718975|ref|ZP_10338902.1| pseudouridine synthase [Sphingomonas echinoides ATCC 14820]
Length = 220
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 32/223 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D LV++KP +P+ G L + N +D L ++ + P VHRLDR++S
Sbjct: 6 VLFLDGEALVIDKPAGLPVDRPRDGSLSLENHLDGL-----TFGFKRWPVPVHRLDRDTS 60
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ + L F + +RY A++ G + + G+I
Sbjct: 61 GCLLLSRNPKAHAKLQQAFEQ---------------GLVRKRYLAVLDGVVEGESGLIDL 105
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+KV +T ++ G + S+ + T +RVL + +G S++E P T R HQ+RV
Sbjct: 106 ALAKV--STIETGWRMVGDPLGAKGSKPSRTAWRVL-EIKDGRSFVEFLPETGRTHQIRV 162
Query: 381 HCAEALGTPIVGDYKYG-----WFVHRRWKQMPRVDIEPTSGK 418
H AEALG +VGD YG +H +PRV EP K
Sbjct: 163 HAAEALGAAVVGDPIYGKGEGATLLHAAELTVPRVGKEPIIAK 205
>gi|338707704|ref|YP_004661905.1| pseudouridine synthase [Zymomonas mobilis subsp. pomaceae ATCC
29192]
gi|336294508|gb|AEI37615.1| pseudouridine synthase [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 230
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 40/226 (17%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D+ +V++KP +P+ G V N + A+L + + P +VHRLDR++S
Sbjct: 8 VLFIDAEAIVIDKPAGLPVTSVRDGSFSVENYL-----ASLCFGFKRWPMIVHRLDRDTS 62
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R + FS+ + S+ C YWA++ G P ++ GII
Sbjct: 63 GCLLLARNPR----IHRRFSE-----AFSQGLVKKC------YWAILSGIPDKESGIIDL 107
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL+K+ + I+A G + A+T + +L I S +E +P T R HQLRV
Sbjct: 108 PLTKI--SSVQKGWQIIADPKG----KRAVTRWHLLA-RIGAYSLVEFQPETGRTHQLRV 160
Query: 381 HCAEALGTPIVGDYKYG---------WFVHRRWKQMPRVDIEPTSG 417
H A LG PI+GD YG +H R +PR + +P +
Sbjct: 161 HAATGLGLPILGDPFYGTDKSQKSERMMLHARSLMVPRENKKPVAA 206
>gi|383312295|ref|YP_005365096.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Rickettsia amblyommii str. GAT-30V]
gi|378930955|gb|AFC69464.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Rickettsia amblyommii str. GAT-30V]
Length = 303
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 103/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++V+NKP + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDNLIVINKPAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y+VL + N IE P+T R HQLR+H
Sbjct: 194 ---SQGSTPKITDIDSENGKL-----AITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AKLLGCPILGDDKYG 259
>gi|51473455|ref|YP_067212.1| pseudouridine synthase [Rickettsia typhi str. Wilmington]
gi|383752229|ref|YP_005427329.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. TH1527]
gi|383843065|ref|YP_005423568.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. B9991CWPP]
gi|81692307|sp|Q68XB2.1|RLUC_RICTY RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|51459767|gb|AAU03730.1| Pseudouridine synthase [Rickettsia typhi str. Wilmington]
gi|380758872|gb|AFE54107.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. TH1527]
gi|380759712|gb|AFE54946.1| ribosomal large subunit pseudouridine synthase C [Rickettsia typhi
str. B9991CWPP]
Length = 303
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDHLIAINKPASLATQGGSKINLSIDS----ALKYLNYQGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + ++Y+A+ G P + GI+ + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVIKKYFAITYGRPVKNVGIVKSNIGK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G+ +I I + N L A+T Y++L + N IE P+T R HQLR+H
Sbjct: 194 ---SKGRMFKITDIDSDNGKL-----AITYYKLLKSLNNNLFLIEFMPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AQLLGCPILGDDKYG 259
>gi|410611272|ref|ZP_11322371.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
psychrophila 170]
gi|410169123|dbj|GAC36260.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
psychrophila 170]
Length = 317
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 121/259 (46%), Gaps = 44/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTN-EVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ N E+ P R+ P + PS LN ++
Sbjct: 46 GEVRVNKKRVKPEYKLQPNDELRIPPVRVSEPTDL------------PSTKLN----KVS 89
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + Y D ++VLNKP + G + ++AL A + E LVHRLDR+
Sbjct: 90 SLENHILYEDDCLIVLNKPSGTAVHGGSGLSFGVIEALRALRPQQKFLE---LVHRLDRD 146
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG LL+ + + ++ KSL + D + +RY ALV G + +
Sbjct: 147 TSGCLLIAKKRSAL-------------KSLHEQLRD--RKVDKRYQALVAGEWPANRFKV 191
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++L G + + T YR+L N + +E P+T R HQ+
Sbjct: 192 KAPLLKNTLKSG--ERVVLVNEEG----KPSETRYRILESF-NHATLVEASPITGRTHQI 244
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVHC A G PI D +YG
Sbjct: 245 RVHCLHA-GHPIAADNRYG 262
>gi|340053911|emb|CCC48205.1| putative pseudouridylate synthase-like protein [Trypanosoma vivax
Y486]
Length = 407
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 23/197 (11%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL---SYDYNEGPKLVHRLDRESS 260
+V +++ ++V+NKP +P+ +P NS + AA L Y P + H LD+E+S
Sbjct: 160 MVLFKNEHVIVINKPQGIPM---MPTSNSQEMNIAAMLPAWKYTNTTKPIVCHNLDKETS 216
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G +++ RT+ + +L +F S+ YW +G P G I
Sbjct: 217 GCVVLARTRSAHRMLARMFVKRVVPNSV--------------YWGFCVGKPPVNFGRIRM 262
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
+ G +I+A+ S S+ A+ E+ V + S+I PLT R+HQ R+
Sbjct: 263 HFD---VSRGNKGDVIIARPSPTRTSRVAIAEFVVNASALEFGSFISFYPLTTRRHQERI 319
Query: 381 HCAEALGTPIVGDYKYG 397
A AL P++GD KYG
Sbjct: 320 MAAHALRCPVMGDAKYG 336
>gi|397676641|ref|YP_006518179.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|2995386|emb|CAA63803.1| hypothetical protein [Zymomonas mobilis subsp. mobilis ATCC 29191]
gi|395397330|gb|AFN56657.1| pseudouridine synthase [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 219
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 97/196 (49%), Gaps = 31/196 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D+ ++++KP +P+ G L + N + A+L + + P +VHRLDR++S
Sbjct: 8 VLFIDAEAMIIDKPAGLPVTSVRDGSLSLENYL-----ASLCFGFKRWPSIVHRLDRDTS 62
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R + L+ FS K YWA++ G P++ +G I
Sbjct: 63 GCLLLARNPKMHRRLSEAFSQGQVKKC---------------YWAILEGVPEKNEGTIDL 107
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL K+ K+ I+A + G + A+T + +L G S + RP T R HQLRV
Sbjct: 108 PLLKI--SSPKSGWRIVADDKG----KRAVTHWEILAKN-KGRSLVAFRPETGRTHQLRV 160
Query: 381 HCAEALGTPIVGDYKY 396
H A LG PIVGD Y
Sbjct: 161 HAATGLGLPIVGDPFY 176
>gi|357032032|ref|ZP_09093972.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
morbifer G707]
gi|356414259|gb|EHH67906.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
morbifer G707]
Length = 221
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 95/186 (51%), Gaps = 27/186 (14%)
Query: 212 ILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKES 271
L+LNKP + + P ++ D++ + + GP L HRLD +++G LL+ R K
Sbjct: 17 FLILNKPAGLAVH---PGPSTRDSVETRLVPHPRG-GPWLAHRLDADTAGCLLIARRK-- 70
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK 331
+LL D + + ++ YWA+V+G+P E G I PL K D
Sbjct: 71 TALLE--AQDAFRHRR-----------THKLYWAVVVGNPPEDSGSITGPLLK--RSDRN 115
Query: 332 TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIV 391
R+++ N A T++RVLG +G W+EL LT R HQ R HCA ALGTPI+
Sbjct: 116 GWRMVVDANG-----DNARTDWRVLG-RKDGLCWLELDLLTGRTHQARAHCAAALGTPIL 169
Query: 392 GDYKYG 397
GD YG
Sbjct: 170 GDPVYG 175
>gi|452752053|ref|ZP_21951797.1| Pseudouridylate synthase [alpha proteobacterium JLT2015]
gi|451960573|gb|EMD82985.1| Pseudouridylate synthase [alpha proteobacterium JLT2015]
Length = 225
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 39/201 (19%)
Query: 207 YRDSAILVLNKP--------PKVP--LKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
Y D+ +L+++KP P+ P L+ HLP ALS + P+ HRLD
Sbjct: 18 YEDAELLIIDKPAGLAVHPGPRTPRSLEDHLP-----------ALSLGFRRLPQPAHRLD 66
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG L++ R ++ ++ LF K+ Y A + G +G
Sbjct: 67 RDTSGCLVLARNPRALKQVSALFEAGAAEKT---------------YIARLAGE-VAGEG 110
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+I APL K+ D ++ +G ++ A+T +RVL G S +E RP T R H
Sbjct: 111 VIDAPLRKISSRDAGWRMVVGPSGAGQGGAKRAVTAWRVL-QSSGGTSLVEFRPQTGRTH 169
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q+RVH A AL PI+GD YG
Sbjct: 170 QIRVHAAHAL-APIIGDPVYG 189
>gi|307109075|gb|EFN57314.1| hypothetical protein CHLNCDRAFT_12398, partial [Chlorella
variabilis]
Length = 198
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 17/203 (8%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP-----KLVHRL 255
LR + + D +L + KP + +G V +S+D++ AAA + + GP +LVHRL
Sbjct: 7 LRSCLLHSDPDLLAVCKPAGLACQGGSGVAHSVDSVMAAA--FAHLPGPASHHLRLVHRL 64
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR-YWALVIGSPKEK 314
DR+++G LL+ R ++ + L F + + S + + A Q+ YWA+V + E
Sbjct: 65 DRQTTGALLLARGPDAAAWLAAAFRESSGGSGGSGRGDSSSGASIQKQYWAVV--ALPEG 122
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
G P + G + G A+Q A+T YRVL G +W+EL P T R
Sbjct: 123 GGAHRLPAA------GAISLPVPGGRGGAAAAQPALTRYRVL-HRGGGLAWLELAPATGR 175
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
KHQLR+HCA+ LG I+GD +YG
Sbjct: 176 KHQLRLHCAQGLGAAILGDGRYG 198
>gi|407851695|gb|EKG05467.1| pseudouridylate synthase-like protein, putative [Trypanosoma cruzi]
Length = 407
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 23/197 (11%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALS---YDYNEGPKLVHRLDRESS 260
+V +++ ++V+NKP VP+ +P + + AA LS Y + P + H LD+E+S
Sbjct: 160 MVLFKNEHVIVINKPHGVPM---MPTSDPQEMNIAAMLSAWKYTNSTKPIVCHNLDKETS 216
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G +++ R+K + +L +F S+ YW +G P G I
Sbjct: 217 GCVVLARSKNAHRMLARIFVKRVVPNSV--------------YWGFCVGKPSVNFGRIRM 262
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
+ G II+A+ S +AS+ + E+ V + S+I PLT R+HQ R+
Sbjct: 263 HFE---MTRGTKGDIIVARPSPTKASKVGIAEFVVNASALEFGSFISFYPLTTRRHQERI 319
Query: 381 HCAEALGTPIVGDYKYG 397
A AL +P++GD KYG
Sbjct: 320 MAAHALRSPLLGDAKYG 336
>gi|429769328|ref|ZP_19301441.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
gi|429187342|gb|EKY28258.1| pseudouridine synthase, RluA family [Brevundimonas diminuta 470-4]
Length = 241
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 23/216 (10%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKG-HLPVHNSMDALAAAALSYDYNEGPKLVHR 254
+EI +R V + D+ ++ NKP + +G + H D L A A S + P+LVHR
Sbjct: 12 EEIAAVRSWVMHEDAHLIAFNKPSGLSSQGGRIQAHTLDDLLWAFARSN--GKRPELVHR 69
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LDR++SG++L +TK + F + + K Y ALV +P+ K
Sbjct: 70 LDRDTSGVILAAKTKPAAG----FFGKAMQMRKFQKT-----------YLALVAAAPEPK 114
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
G I + L + + R++ G +Q A + YR L +G +EL P T R
Sbjct: 115 SGRITSALRREEIGRESYMRVVAFDAPG---AQGAASGYRTLASSQDGA-VVELSPETGR 170
Query: 375 KHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
HQLRVH A ++G P+VGD +YG + + PR+
Sbjct: 171 MHQLRVHMA-SIGRPLVGDVRYGGALTFAGRAAPRL 205
>gi|119775123|ref|YP_927863.1| pseudouridylate synthase [Shewanella amazonensis SB2B]
gi|119767623|gb|ABM00194.1| ribosomal large subunit pseudouridine synthase C [Shewanella
amazonensis SB2B]
Length = 330
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 127/258 (49%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKT-NEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K+ +EV P PV + E K Y T PS LN +
Sbjct: 57 GEVRVNKKRIKPEYKLAAGDEVRVP------PVRVAE----KDYRTAPSANLN----RVA 102
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D I+VLNKP + + G V + +++L + + + E LVHRLDR+
Sbjct: 103 QLEDRILFEDKQIIVLNKPAGIAVHGGSGVDYGVIESLRSLRPTCKFLE---LVHRLDRD 159
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + ++ L D ++K + K Y ALV G +E ++
Sbjct: 160 TSGVLLIAKKRMALRHL----HDQLRNKQMQKV-----------YQALVRGQWQEHDRVV 204
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K+ L G ERI+ + G + + T +RVL + S +E P+T R HQ+
Sbjct: 205 KAPLLKITLKSG--ERIVRVNSEG----KPSETRFRVL-RRFDEASLVEASPVTGRTHQI 257
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC + G PI D KY
Sbjct: 258 RVHC-QYQGHPIACDDKY 274
>gi|15604128|ref|NP_220643.1| hypothetical protein RP258 [Rickettsia prowazekii str. Madrid E]
gi|383487099|ref|YP_005404779.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. GvV257]
gi|383487676|ref|YP_005405355.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Chernikova]
gi|383488522|ref|YP_005406200.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Katsinyian]
gi|383489364|ref|YP_005407041.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Dachau]
gi|383499500|ref|YP_005412861.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. BuV67-CWPP]
gi|383500339|ref|YP_005413699.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. RpGvF24]
gi|386082092|ref|YP_005998669.1| Ribosomal large subunit pseudouridine synthase [Rickettsia
prowazekii str. Rp22]
gi|14423907|sp|Q9ZDR7.1|RLUC_RICPR RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|3860820|emb|CAA14720.1| unknown [Rickettsia prowazekii str. Madrid E]
gi|292571856|gb|ADE29771.1| Ribosomal large subunit pseudouridine synthase [Rickettsia
prowazekii str. Rp22]
gi|380757464|gb|AFE52701.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. GvV257]
gi|380758036|gb|AFE53272.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. RpGvF24]
gi|380760555|gb|AFE49077.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Chernikova]
gi|380761401|gb|AFE49922.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Katsinyian]
gi|380762246|gb|AFE50766.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. BuV67-CWPP]
gi|380763087|gb|AFE51606.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
prowazekii str. Dachau]
Length = 303
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 28/193 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDHLIAINKPASLATQGGSKINLSIDS----ALKYLNYQGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + ++Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHNAFKE--KLVIKKYFAITYGRPVKNVGTVKSNIGK 193
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
R+ N + + A+T Y++L + N IE P+T R HQLR+H A+
Sbjct: 194 ------SKRRLSKIANIDSDDGKLAITYYKLLKSLNNNLFLIEFMPVTGRMHQLRLH-AQ 246
Query: 385 ALGTPIVGDYKYG 397
LG PI+GD KYG
Sbjct: 247 LLGCPILGDDKYG 259
>gi|157827593|ref|YP_001496657.1| ribosomal large subunit pseudouridine synthase [Rickettsia bellii
OSU 85-389]
gi|157802897|gb|ABV79620.1| Ribosomal large subunit pseudouridine synthase [Rickettsia bellii
OSU 85-389]
Length = 310
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 30/194 (15%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D I+ +NKP + +G ++ S+D+ AL Y ++G KLVHRLD+E+SGLLL
Sbjct: 102 YEDDNIIAINKPAGLATQGGSKINLSVDS----ALKYLNSQGADFKLVHRLDKETSGLLL 157
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S + D K K + K Y A+ G P + QG + + K
Sbjct: 158 IAKNYVS----SVKLHDAFKEKLVEKT-----------YLAVTYGKPIKDQGEVKTNIEK 202
Query: 325 VLLDDGKTERII-LAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
G +I + N+G + A+T Y++L + N +E P+T R HQLR+H A
Sbjct: 203 ---SKGSIPKITDINDNNG----KLAITYYKLLKSLTNNLFLVEFIPITGRMHQLRLH-A 254
Query: 384 EALGTPIVGDYKYG 397
+ LG PI GD KYG
Sbjct: 255 KLLGCPIFGDNKYG 268
>gi|339018721|ref|ZP_08644849.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Acetobacter tropicalis NBRC 101654]
gi|338752191|dbj|GAA08153.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase A
[Acetobacter tropicalis NBRC 101654]
Length = 223
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 93/195 (47%), Gaps = 34/195 (17%)
Query: 207 YRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
Y+D +++L+KP +P+ KG V +S L+ +GP L HRLD E+SG
Sbjct: 15 YQDQHVVILDKPAGIPVHAGPKGGPCVEDSFPLLS------RRKDGPWLAHRLDTETSGC 68
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L + K+ + + F+ K+ YWA+V G PK+ G I PL
Sbjct: 69 LAIALRKQPLLTMQQAFASRTAQKT---------------YWAVVQGGPKDDTGEIDLPL 113
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
K D R+I + E A T +RVLG N W+EL T R HQ RVHC
Sbjct: 114 LKQ--TDRSGWRMITS-----EKGTPARTSWRVLG-RSNSLCWLELHLHTGRTHQARVHC 165
Query: 383 AEALGTPIVGDYKYG 397
A A+G PIVGD YG
Sbjct: 166 A-AMGWPIVGDTLYG 179
>gi|156230593|gb|AAI52263.1| Zgc:92006 protein [Danio rerio]
Length = 358
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 119/268 (44%), Gaps = 63/268 (23%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALA--AAALSYDYNEGPKL--VHRLDRESSGL 262
Y D I+ +NKP VPL + NS+ A +S + G +L H+L++E++G+
Sbjct: 93 YEDQNIIAINKPYDVPLHNINGIRNSIAECLPLLAKISDNMRPGSQLHLCHKLEKETTGV 152
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH--- 319
L++ +T+E+ + L + +Y A+ +G P +G+I
Sbjct: 153 LILAKTEEAAEHVQTLIQS---------------HKVEMKYLAITVGVPVPSEGVIDIPV 197
Query: 320 ----------------APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
+PL KV D R+ + A+T YRVL +GC
Sbjct: 198 IERAVVGPQPHFKMALSPLFKVNEDGDGVTRV-----RAHRQAHAAVTRYRVLD-NTSGC 251
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLR 423
S +EL+PLT K+QLRVH A AL PI+GD+KY W ++ P KL
Sbjct: 252 SLVELQPLTGVKNQLRVHMALALTCPILGDHKYS-----HWSKL----------APQKL- 295
Query: 424 RPDGLDVQKGSVLSKVPL--LHLHCREL 449
P+G + G V SK LHLH R +
Sbjct: 296 -PEGTLRRLGLVQSKTRYLPLHLHSRRI 322
>gi|157803478|ref|YP_001492027.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. McKiel]
gi|379022679|ref|YP_005299340.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. CA410]
gi|157784741|gb|ABV73242.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. McKiel]
gi|376323617|gb|AFB20858.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
canadensis str. CA410]
Length = 303
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 28/193 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDNLIAINKPAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + L + F D K K + K Y+A+ G P + G + + + K
Sbjct: 149 IAKN----YLSSIKFHDAFKDKLVVKT-----------YFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
G T +I + E + A+T Y++L + N IE P+T + HQLR+H A+
Sbjct: 194 ---SKGSTRKI---TDIDSENGKLAITYYKLLKSLDNNLFLIEFTPITGKMHQLRLH-AK 246
Query: 385 ALGTPIVGDYKYG 397
LG PI+GD KYG
Sbjct: 247 LLGCPILGDDKYG 259
>gi|157825473|ref|YP_001493193.1| ribosomal large subunit pseudouridine synthase C [Rickettsia akari
str. Hartford]
gi|157799431|gb|ABV74685.1| ribosomal large subunit pseudouridine synthase C [Rickettsia akari
str. Hartford]
Length = 303
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 106/204 (51%), Gaps = 36/204 (17%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRL 255
IDYL Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRL
Sbjct: 88 IDYLI----YEDDNLIAINKPAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRL 139
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+E+SGLLL+ + S S L A+ + + + + Y A+ G P +
Sbjct: 140 DKETSGLLLIAKNYLS-------------SVKLHDAFKE--KLIVKTYCAITYGKPIKNV 184
Query: 316 GIIHAPLSKVLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
G + + + K G T +I I ++N+ L A+T Y++L + N IE P+T
Sbjct: 185 GEVRSNIEK---SKGSTPKITDIDSENAKL-----AITYYKLLKSLDNNLFLIEFTPVTG 236
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQLR+H ++ LG PIVGD KYG
Sbjct: 237 RMHQLRLH-SKLLGCPIVGDNKYG 259
>gi|91205071|ref|YP_537426.1| ribosomal large subunit pseudouridine synthase [Rickettsia bellii
RML369-C]
gi|122425980|sp|Q1RJX7.1|RLUC_RICBR RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|91068615|gb|ABE04337.1| Ribosomal large subunit pseudouridine synthase [Rickettsia bellii
RML369-C]
Length = 301
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 30/194 (15%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D I+ +NKP + +G ++ S+D+ AL Y ++G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDNIIAINKPAGLATQGGSKINLSVDS----ALKYLNSQGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S + D K K + K Y A+ G P + QG + + K
Sbjct: 149 IAKNYVS----SVKLHDAFKEKLVEKT-----------YLAVTYGKPIKDQGEVKTNIEK 193
Query: 325 VLLDDGKTERII-LAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
G +I + N+G + A+T Y++L + N +E P+T R HQLR+H A
Sbjct: 194 ---SKGSIPKITDINDNNG----KLAITYYKLLKSLTNNLFLVEFIPITGRMHQLRLH-A 245
Query: 384 EALGTPIVGDYKYG 397
+ LG PI GD KYG
Sbjct: 246 KLLGCPIFGDNKYG 259
>gi|307109077|gb|EFN57316.1| hypothetical protein CHLNCDRAFT_143940 [Chlorella variabilis]
Length = 330
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 18/202 (8%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP-----KLVHRL 255
LR + + D +L + KP + +G V +S+D++ AAA + + GP +LVHRL
Sbjct: 102 LRSCLLHSDPDLLAVCKPAGLACQGGSGVSHSVDSVMAAA--FAHLPGPASHHLRLVHRL 159
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEA--MYQRYWALVIGSPKE 313
DR+++G LL+ R ++ + L F + + S D+ + ++YWA+V
Sbjct: 160 DRQTTGALLLARGPDAAAWLAAAFQESSGGGSSGGGRGDSSSGAIIRKQYWAVVA---LP 216
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
+ G H L G + G+ A+Q A T YRVL G +W+EL P T
Sbjct: 217 EGGAAH-----RLPAAGAISLPVPGGRGGVAAAQPAPTRYRVLH-RGGGLAWLELAPATG 270
Query: 374 RKHQLRVHCAEALGTPIVGDYK 395
RKHQLR+HCA+ LG I+GD +
Sbjct: 271 RKHQLRLHCAQGLGAAILGDGR 292
>gi|429335472|ref|ZP_19216100.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida CSV86]
gi|428759857|gb|EKX82143.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida CSV86]
Length = 318
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP KI++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKIQSGDIVR-----VPPV-----RLPERDEPVPVAQ-----GLLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G ++ + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLNFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLL++ + + S+L L + + + + +RY ALV G + ++A
Sbjct: 151 GLLMIAKKR---SMLRHLHTALR------------GDGVDKRYMALVRGHWATGKKQVNA 195
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL K L G ER++ + G +EA+T +RVL + + +E RP+T R HQ+RV
Sbjct: 196 PLLKSNLRSG--ERMVEVNDEG----KEALTVFRVLRRFGDFATMVEARPITGRTHQIRV 249
Query: 381 HCAEALGTPIVGDYKYG 397
H A G I GD KYG
Sbjct: 250 HALHA-GHAIAGDSKYG 265
>gi|329850247|ref|ZP_08265092.1| RNA pseudouridylate synthase family protein [Asticcacaulis
biprosthecum C19]
gi|328840562|gb|EGF90133.1| RNA pseudouridylate synthase family protein [Asticcacaulis
biprosthecum C19]
Length = 267
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 23/227 (10%)
Query: 186 IPSGTL--NPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY 243
IP+ L N +AD+I +++ +V Y D+ I+ NKP + +G +++D + A +
Sbjct: 26 IPASKLPRNLSADDIAWVKSMVIYEDADIMGFNKPSGLSSQGGRGDGHNLDDMMWA-FAK 84
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
+ PKLVHRLDR++SG+LL+ +T+ +VS L K++ + A + Y
Sbjct: 85 SNGKRPKLVHRLDRDTSGILLVAKTQPAVSFL---------GKAMIR------RAFDKTY 129
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
A+V G+ + + APL + + R+ + +Q T + VL +
Sbjct: 130 LAIVSGAELPDRFTVDAPLRREEVGREAWSRVCAPDHPDALTAQ---TTFEVL-KRGDDA 185
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+ I+ P T R HQ+RVH A LGTPI GD +YG + + +PR+
Sbjct: 186 ALIQCSPHTGRMHQIRVHLAH-LGTPIAGDVRYGGALSVGGRGVPRL 231
>gi|251772724|gb|EES53286.1| Ribosomal large subunit pseudouridine synthase, RluA family
[Leptospirillum ferrodiazotrophum]
Length = 313
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 114/255 (44%), Gaps = 41/255 (16%)
Query: 193 PNADEIDYLRRLVKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSYDYNEG- 248
P+ D + + + Y D +LV+NKPP + P GH P ++ L + EG
Sbjct: 66 PSEDAPEEMDLDILYEDEFLLVINKPPSLVVHPAPGH-PNGTLLNGLLGHLSREEAGEGE 124
Query: 249 ----PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYW 304
LVHRLD+ +SGLL++G+ E V L F SKS Y
Sbjct: 125 GPARAGLVHRLDQNTSGLLVVGKKSEVVDHLMEQFRGRTVSKS---------------YI 169
Query: 305 ALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCS 364
AL IG P ++G+I AP+ + +R A SG + SQ T YRV+ G S
Sbjct: 170 ALAIGIPPSRRGLIDAPIGR-----SNGDRKKFAVTSGGKPSQ---TRYRVMTAYREGYS 221
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDI--------EPTS 416
+++ LT R HQ+RVH + LG P+ GD Y + PR+ + P +
Sbjct: 222 LLDITLLTGRTHQIRVHM-QHLGYPLAGDPVYKKKGRKDNLLFPRIMLHAANLGFTHPIT 280
Query: 417 GKPYKLRRPDGLDVQ 431
G+ K P D+Q
Sbjct: 281 GEELKFHAPLPPDMQ 295
>gi|73749059|ref|YP_308298.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. CBDB1]
gi|73660775|emb|CAI83382.1| ribosomal large subunit pseudouridine synthase,RluD subfamily
[Dehalococcoides sp. CBDB1]
Length = 300
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 36/246 (14%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVH---NSMDALAAAALSYDYNEGPKLVHRLDRE 258
+ ++D +L++NKPP + P GH P H N + AL +D P +VHRLD++
Sbjct: 80 IIFQDKDLLLINKPPGLTVHPAPGH-PDHTLVNGVLALEPEMEDFDDPLRPGIVHRLDKD 138
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SGLLL+ + +++++ L+ F K +++ K Y ALV G + +G I
Sbjct: 139 TSGLLLVAKNRQALANLSAQF----KERTIRK-----------YYLALVKGELRPAEGFI 183
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL + D ++I + + + A T Y+VL I G S +E++ T R HQ+
Sbjct: 184 EAPLGR---DPQNRQKIAVVSD-----GRHARTGYKVLR-YIQGYSLLEVKLETGRTHQI 234
Query: 379 RVHCAEALGTPIVGDYKYGW---FVHRRWKQMPRVDIE-PTSGKPYKLRRPDGLDVQKGS 434
RVH A A+G P+ GD YG +V R++ R+ P++G+ + P D+++
Sbjct: 235 RVHFA-AIGHPVAGDAVYGQKESWVKRQFLHAHRLSFALPSNGQVVEFTSPLPPDLEEAL 293
Query: 435 VLSKVP 440
+ + P
Sbjct: 294 KILETP 299
>gi|67459415|ref|YP_247039.1| ribosomal large subunit pseudouridine synthase [Rickettsia felis
URRWXCal2]
gi|75536169|sp|Q4UKQ3.1|RLUC_RICFE RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|67004948|gb|AAY61874.1| Ribosomal large subunit pseudouridine synthase [Rickettsia felis
URRWXCal2]
Length = 305
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 103/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDNLIAINKPAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S+V L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKN---------YLSNV----KLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y++L + N IE P+T R HQLR+H
Sbjct: 194 ---SKGSTPKITDIYSENGKL-----AITYYKLLKSLDNNLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PIVGD KYG
Sbjct: 245 AKLLGCPIVGDDKYG 259
>gi|53804453|ref|YP_113936.1| ribosomal large subunit pseudouridine synthase C [Methylococcus
capsulatus str. Bath]
gi|53758214|gb|AAU92505.1| ribosomal large subunit pseudouridine synthase C [Methylococcus
capsulatus str. Bath]
Length = 316
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 104/199 (52%), Gaps = 27/199 (13%)
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRE 258
+L + + D +LV+NKP + + G + ++ L AA + E LVHRLDR+
Sbjct: 89 WLENRILHEDEDLLVVNKPAGMAVHGGSGLRFGVIEGLRAAREDARFLE---LVHRLDRD 145
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG LL+ + + ++ L F E + + Y AL G ++ ++
Sbjct: 146 TSGCLLIAKRRSALRQLHEQFR---------------GEGVDKTYLALFSGVWARRRQVV 190
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K +L G ER++ + G + A+TE+R L P+ +G + +E RP+T R HQ+
Sbjct: 191 DAPLLKNVLQSG--ERMVKISSEG----KAAITEFRRLEPL-SGATLVEARPVTGRTHQI 243
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A +LG P+ GD +YG
Sbjct: 244 RVH-ARSLGHPLAGDERYG 261
>gi|390452025|ref|ZP_10237581.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
gi|389660237|gb|EIM71944.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
Length = 267
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 134/286 (46%), Gaps = 57/286 (19%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGH--LPVHNSMDALAAAALS-YDYNEGPKLVHRLDRE 258
V Y D A++V+NKP + P G+ + N++ A+LS P +VHRLDR+
Sbjct: 17 VLYEDDALIVINKPAGLVVHPAPGNWSGTLVNALLHHCGASLSGIGGVRRPGIVHRLDRD 76
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG++++ +T + LL+ F+D +S L +A Y A+V G+P+ G I
Sbjct: 77 TSGVMVVAKTDNAHRLLSETFADHGRSGDLERA-----------YVAVVWGAPERMAGTI 125
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRV---LGPMINGCSW---IELRPLT 372
APL + +T R ++ +G ++ A+T Y+V G +G ++ +E R T
Sbjct: 126 DAPLGRHA--QSRTLRAVVP--AGRSDARHAVTRYQVQKRYGADGSGKAFAAKVECRLET 181
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQK 432
R HQ+RVH A +G P++GD YG + ++P DI PT
Sbjct: 182 GRTHQIRVHMAH-IGHPLIGDADYGRAFRTKVNRLPE-DIRPT----------------- 222
Query: 433 GSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
++ P LH R L + P+ DL+RF A P M
Sbjct: 223 ---VAAFPRQALHARLLAFRH--------PETGDLMRFEADPPPDM 257
>gi|147669825|ref|YP_001214643.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. BAV1]
gi|289433036|ref|YP_003462909.1| pseudouridine synthase [Dehalococcoides sp. GT]
gi|146270773|gb|ABQ17765.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. BAV1]
gi|288946756|gb|ADC74453.1| pseudouridine synthase, RluA family [Dehalococcoides sp. GT]
Length = 300
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 36/246 (14%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVH---NSMDALAAAALSYDYNEGPKLVHRLDRE 258
+ ++D +L++NKPP + P GH P H N + AL +D P +VHRLD++
Sbjct: 80 IIFQDKDLLLINKPPGLTVHPAPGH-PDHTLVNGVLALEPEMEDFDDPLRPGIVHRLDKD 138
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SGLLL+ + +++++ L+ F K +++ K Y ALV G + +G I
Sbjct: 139 TSGLLLVAKNRQALANLSAQF----KERTVRKY-----------YLALVKGELRPAEGFI 183
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL + D ++I + + + A T Y+VL I G S +E++ T R HQ+
Sbjct: 184 EAPLGR---DPQNRQKIAVVSD-----GRHARTGYKVLR-YIQGYSLLEVKLETGRTHQI 234
Query: 379 RVHCAEALGTPIVGDYKYGW---FVHRRWKQMPRVDIE-PTSGKPYKLRRPDGLDVQKGS 434
RVH A A+G P+ GD YG +V R++ R+ P++G+ + P D+++
Sbjct: 235 RVHFA-AIGHPVAGDAVYGQKESWVKRQFLHAHRLSFALPSNGQVVEFTSPLPPDLEEAL 293
Query: 435 VLSKVP 440
+ + P
Sbjct: 294 KILETP 299
>gi|402703865|ref|ZP_10851844.1| ribosomal large subunit pseudouridine synthase [Rickettsia
helvetica C9P9]
Length = 303
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP ++ +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDNLIAINKPARLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y++L + N IE P+T R HQLR+H
Sbjct: 194 ---SKGSTPKITDIDSENGKL-----AITYYKLLKSLENNLFLIEFMPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AKLLGCPILGDDKYG 259
>gi|410632029|ref|ZP_11342700.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola arctica
BSs20135]
gi|410148565|dbj|GAC19567.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola arctica
BSs20135]
Length = 317
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 122/259 (47%), Gaps = 44/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTN-EVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ N E+ P R+ P + PS LN ++
Sbjct: 46 GEVRVNKKRVKPEYKLQPNDELRIPPVRVSEPTDL------------PSTKLN----KVS 89
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + Y D ++VLNKP + G + ++AL A + E LVHRLDR+
Sbjct: 90 SLENHILYEDDWLIVLNKPSGTAVHGGSGLSFGVIEALRALRPQQKFLE---LVHRLDRD 146
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG LL+ + + ++ K+L + D + +RY ALV G + +
Sbjct: 147 TSGCLLIAKKRSAL-------------KNLHEQLRD--RKVDKRYQALVAGEWPANRFKV 191
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ERI+L + G + + T YR+L N + +E P+T R HQ+
Sbjct: 192 KAPLLKNTLKSG--ERIVLVDDEG----KPSETRYRILESF-NQATLVEASPITGRTHQI 244
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVHC A G PI D +YG
Sbjct: 245 RVHCLHA-GHPIAADNRYG 262
>gi|332141130|ref|YP_004426868.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii str. 'Deep ecotype']
gi|410861442|ref|YP_006976676.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii AltDE1]
gi|327551152|gb|AEA97870.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii str. 'Deep ecotype']
gi|410818704|gb|AFV85321.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii AltDE1]
Length = 313
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 124/267 (46%), Gaps = 60/267 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ ++++ PV + EG + PS P D+I
Sbjct: 46 GEVRVNKGRVKPEYKLQADDIVR-----IPPVRVSEGAPA------PS----PKLDKIAA 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + + D ILV+NKP + + G + LS+ EG +
Sbjct: 91 LESHILFEDDRILVMNKPSGMAVHG------------GSGLSFGLIEGLRALRPDAKFME 138
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG +L+ + + S L + + K M +RY ALV G
Sbjct: 139 LVHRLDRDTSGCILIAKKR---SALRHMHEQLRTGK------------MDKRYNALVAGE 183
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ + + APL K +L G ER++ + G + + T YR+L G + +E P
Sbjct: 184 WPKNRFKVKAPLRKNVLQSG--ERMVSVSDDG----KPSETRYRILEEYA-GATLVEASP 236
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVHC A G PI D KYG
Sbjct: 237 ITGRTHQIRVHCLHA-GHPIACDPKYG 262
>gi|414169243|ref|ZP_11425080.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
gi|410886002|gb|EKS33815.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
Length = 255
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 123/282 (43%), Gaps = 79/282 (28%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V +RD +LV++KP + + KG + S DAL Y P L HRLDR++S
Sbjct: 15 VLHRDGLMLVIDKPAGIAVHKGPKGGPNLEASFDAL-----RYGLPRPPVLAHRLDRDTS 69
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR +++ + L LF K+ YW +V G P +G I
Sbjct: 70 GCLVLGRHRKATASLGLLFKHGKIDKT---------------YWTVVEGGPDASEGEIDI 114
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING----CSWIELRPLTCRKH 376
PL ++ + G ++ +GL + T ++VLG + +W+ + P+T R H
Sbjct: 115 PLGRLDAERGWWQK---PDPNGLPSK----TVWKVLGRGTDAGGAKLTWLAMEPITGRTH 167
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVL 436
QLRVHC+ A G PIVGD YG PR EP+
Sbjct: 168 QLRVHCS-ASGWPIVGDNIYG--------NGPRFG-EPS--------------------- 196
Query: 437 SKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
LHLH RE+ + P +KP +R VA P H+
Sbjct: 197 -----LHLHAREI----VIPLSKNKPP----VRVVAPAPVHL 225
>gi|296136842|ref|YP_003644084.1| RluA family pseudouridine synthase [Thiomonas intermedia K12]
gi|295796964|gb|ADG31754.1| pseudouridine synthase, RluA family [Thiomonas intermedia K12]
Length = 329
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 100/202 (49%), Gaps = 34/202 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
+ + D +L +NKP V + G V ++AL AA + + E LVHRLDR++SGLL
Sbjct: 90 IVFEDDFLLAINKPEGVAVHGGSGVSFGVIEALRAARPTAKFLE---LVHRLDRDTSGLL 146
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + +++ L + + K RY ALV G +I APL
Sbjct: 147 LIAKKRSALTTLHAALRERHADK---------------RYLALVAGLWTRGAVMIEAPLH 191
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRV--------LGPMINGCSWIELRPLTCRK 375
K LL +G+ + AQ QE+ T++R LGP G S ++ R LT R
Sbjct: 192 KYLLANGERRVRVDAQQ-----GQESRTQFRSQEQFALPGLGPW-GGLSLMQARLLTGRT 245
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A G PIVGD KYG
Sbjct: 246 HQIRVHLAHC-GHPIVGDDKYG 266
>gi|296114348|ref|ZP_06833002.1| pseudouridine synthase [Gluconacetobacter hansenii ATCC 23769]
gi|295979109|gb|EFG85833.1| pseudouridine synthase [Gluconacetobacter hansenii ATCC 23769]
Length = 293
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
V R +V++KPP +P H A AL + GP L HRLDR++SG LL
Sbjct: 35 VLLRTRHFIVIDKPPGLP--AHAGRAGGPSVEDAFALMSRHRNGPWLAHRLDRDTSGCLL 92
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ K+++ F+ +K YWA+ G P G++ APL +
Sbjct: 93 VALRKQALIAAQECFASGRTTKV---------------YWAITHGHPTAGHGVVDAPLLR 137
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVL--GPMING--CSWIELRPLTCRKHQLRV 380
+ G+ I Q+A T +R L G M +G SW+ELR T R HQ RV
Sbjct: 138 -RAERGQWRMEITPDG------QDARTAWRCLARGHMPDGSPASWLELRLETGRTHQARV 190
Query: 381 HCAEALGTPIVGDYKYG 397
HCA ALG P++GD +YG
Sbjct: 191 HCA-ALGCPVMGDGQYG 206
>gi|71653582|ref|XP_815426.1| pseudouridylate synthase-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70880480|gb|EAN93575.1| pseudouridylate synthase-like protein, putative [Trypanosoma cruzi]
Length = 407
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALS---YDYNEGPKLVHRLDRESS 260
+V +++ ++V+NKP VP+ +P + + AA LS Y + P + H LD+E+S
Sbjct: 160 MVLFKNEHVIVINKPHGVPM---MPTSDPQEMNIAAMLSAWKYTNSTKPIVCHNLDKETS 216
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G +++ R+K + +L +F S+ YW +G P G I
Sbjct: 217 GCVVLARSKNAHRMLARMFVKRVVPNSV--------------YWGFCVGKPSVNFGRIRM 262
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
+ G II+A+ S + S+ + E+ V + S+I PLT R+HQ R+
Sbjct: 263 HFE---MTRGTKGDIIVARPSPTKTSKVGIAEFVVNASALEFGSFISFYPLTTRRHQERI 319
Query: 381 HCAEALGTPIVGDYKYG 397
A AL +P++GD KYG
Sbjct: 320 MAAHALRSPLLGDAKYG 336
>gi|381150267|ref|ZP_09862136.1| pseudouridine synthase, RluA family [Methylomicrobium album BG8]
gi|380882239|gb|EIC28116.1| pseudouridine synthase, RluA family [Methylomicrobium album BG8]
Length = 320
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 40/240 (16%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLD 256
D L+R + Y D +V++KP P+ G + +DA L E +LVHRLD
Sbjct: 93 DVLQRGLLYEDEGFMVIDKPAGYPVHGG----SGVDAGIIEGLRRLRPEATFLELVHRLD 148
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG L++ + + ++ L LF D + +++ Y AL+ G K+
Sbjct: 149 RDTSGCLIVAKKRSALRRLHELFRD---------------DHIHKTYLALLAGQWARKKM 193
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+++APL K + G ER+++ +G + A T +R L + + IE P T R H
Sbjct: 194 VVNAPLLKNVSKGG--ERMVVVSQAG----KAAETVFRRL-KLFKNATLIEATPKTGRTH 246
Query: 377 QLRVHCAEALGTPIVGDYKYGW------FVHRRWKQM----PRVDIE-PTSGKPYKLRRP 425
Q+RVH A LG PIVGD +YG F + +K+M + E P +GKP + P
Sbjct: 247 QIRVHAA-WLGHPIVGDERYGLAEVNKAFHRKGYKRMFLHARELAFEHPLTGKPIRFEAP 305
>gi|452205541|ref|YP_007485670.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi BTF08]
gi|452112597|gb|AGG08328.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi BTF08]
Length = 300
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 36/231 (15%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVH---NSMDALAAAALSYDYNEGPKLVHRLDRE 258
+ ++D +L++NKPP + P GH P H N + AL +D P +VHRLD++
Sbjct: 80 IIFQDKDLLLINKPPGLTVHPAPGH-PDHTLVNGVLALEPEMEDFDDPLRPGIVHRLDKD 138
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SGLLL+ + +++++ L+ F K +++ K Y ALV G + +G I
Sbjct: 139 TSGLLLVAKNRQALANLSAQF----KERTVRKY-----------YLALVKGELRPAEGFI 183
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL + D ++I + + + A T Y+VL I G S +E++ T R HQ+
Sbjct: 184 EAPLGR---DPQNRQKIAVVSD-----GRHARTGYKVLR-YIQGYSLLEVKLETGRTHQI 234
Query: 379 RVHCAEALGTPIVGDYKYGW---FVHRRWKQMPRVDIE-PTSGKPYKLRRP 425
RVH A A+G P+ GD YG +V R++ R+ P++G+ + P
Sbjct: 235 RVHFA-AIGHPVAGDAVYGQKESWVKRQFLHAHRLSFALPSNGQVVEFTSP 284
>gi|452204042|ref|YP_007484175.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi DCMB5]
gi|452111101|gb|AGG06833.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi DCMB5]
Length = 300
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 36/231 (15%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVH---NSMDALAAAALSYDYNEGPKLVHRLDRE 258
+ ++D +L++NKPP + P GH P H N + AL +D P +VHRLD++
Sbjct: 80 IIFQDKDLLLINKPPGLTVHPAPGH-PDHTLVNGVLALEPEMEDFDDPLRPGIVHRLDKD 138
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SGLLL+ + +++++ L+ F K +++ K Y ALV G + +G I
Sbjct: 139 TSGLLLVAKNRQALANLSAQF----KERTVRK-----------YYLALVKGELRPAEGFI 183
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL + D ++I + + + A T Y+VL I G S +E++ T R HQ+
Sbjct: 184 EAPLGR---DPQNRQKIAVVSD-----GRHARTGYKVLR-YIQGYSLLEVKLETGRTHQI 234
Query: 379 RVHCAEALGTPIVGDYKYGW---FVHRRWKQMPRVDIE-PTSGKPYKLRRP 425
RVH A A+G P+ GD YG +V R++ R+ P++G+ + P
Sbjct: 235 RVHFA-AIGHPVAGDAVYGQKESWVKRQFLHAHRLSFALPSNGQVVEFTSP 284
>gi|157964329|ref|YP_001499153.1| ribosomal large subunit pseudouridine synthase [Rickettsia
massiliae MTU5]
gi|157844105|gb|ABV84606.1| Ribosomal large subunit pseudouridine synthase [Rickettsia
massiliae MTU5]
Length = 306
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 28/193 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NK + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 96 YADDNLIAINKLAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRLDKETSGLLL 151
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 152 IAKNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 196
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
G T +I N E S+ A+T Y+VL + N IE P+T R HQLR+H A
Sbjct: 197 ---SKGSTPKI---TNIDSENSKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AR 249
Query: 385 ALGTPIVGDYKYG 397
LG PI+GD KYG
Sbjct: 250 LLGCPILGDDKYG 262
>gi|71651380|ref|XP_814369.1| pseudouridylate synthase-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70879335|gb|EAN92518.1| pseudouridylate synthase-like protein, putative [Trypanosoma cruzi]
Length = 448
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALS---YDYNEGPKLVHRLDRESS 260
+V +++ ++V+NKP VP+ +P + + AA LS Y + P + H LD+E+S
Sbjct: 201 MVLFKNEHVIVINKPHGVPM---MPTSDPQEMNIAAMLSAWKYTNSTKPIVCHNLDKETS 257
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G +++ R+K + +L +F S+ YW +G P G I
Sbjct: 258 GCVVLARSKNAHRMLARMFVKRVVPNSV--------------YWGFCVGKPSVNFGRIRM 303
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
+ G II+A+ S + S+ + E+ V + S+I PLT R+HQ R+
Sbjct: 304 HFE---MTRGTKGDIIVARPSPTKTSKVGIAEFVVNASALEFGSFISFYPLTTRRHQERI 360
Query: 381 HCAEALGTPIVGDYKYG 397
A AL +P++GD KYG
Sbjct: 361 MAAHALRSPLLGDAKYG 377
>gi|407687474|ref|YP_006802647.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii str. 'Balearic Sea AD45']
gi|407290854|gb|AFT95166.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii str. 'Balearic Sea AD45']
Length = 313
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 124/267 (46%), Gaps = 60/267 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ ++++ PV + EG + PS P D+I
Sbjct: 46 GEVRVNKGRVKPEYKLQADDLIR-----IPPVRVSEGAPA------PS----PKLDKIAS 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + + D ILV+NKP + + G + LS+ EG +
Sbjct: 91 LESHILFEDDRILVINKPSGMAVHG------------GSGLSFGLIEGLRALRPDAKFME 138
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG +L+ + + S L + + K M +RY ALV G
Sbjct: 139 LVHRLDRDTSGCILIAKKR---SALRHMHEQLRTGK------------MDKRYNALVAGE 183
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ + + APL K +L G ER++ + G + + T YR+L G + +E P
Sbjct: 184 WPKTRFKVKAPLRKNVLQSG--ERMVSVSDDG----KPSETRYRILEEYA-GATLVEASP 236
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVHC A G PI D KYG
Sbjct: 237 ITGRTHQIRVHCLHA-GHPIACDPKYG 262
>gi|402773646|ref|YP_006593183.1| pseudouridine synthase [Methylocystis sp. SC2]
gi|401775666|emb|CCJ08532.1| Pseudouridine synthase [Methylocystis sp. SC2]
Length = 229
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 106/205 (51%), Gaps = 34/205 (16%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVH 253
+D L RL+ +RD +L+++KP V + KG + ++ D L + P L H
Sbjct: 1 MDLLSRLL-HRDGLMLIIDKPAGVAVHRGPKGGASLEDAFDQL-----RFGLPRPPALAH 54
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLD+++SG L++GR ++++ L LF KS + K YWA+V G+P
Sbjct: 55 RLDKDTSGCLVLGRHRKALERLGALF----KSGRIGKT-----------YWAVVEGAPTG 99
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM-INGCSWIELRPLT 372
++G I PL ++ D + GL A T +RVLG N ++IE P T
Sbjct: 100 EEGEIDLPLGRL---DATRGWWMRPDPLGLPAR----TSWRVLGGSPDNRLTFIEFTPHT 152
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+RVH A+A+G PI+GD YG
Sbjct: 153 GRTHQIRVH-AQAMGWPILGDPIYG 176
>gi|379714128|ref|YP_005302466.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
massiliae str. AZT80]
gi|376334774|gb|AFB32006.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
massiliae str. AZT80]
Length = 303
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 28/193 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NK + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YADDNLIAINKLAGLATQGGSKINLSVDS----ALKYLNYKGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
G T +I N E S+ A+T Y+VL + N IE P+T R HQLR+H A
Sbjct: 194 ---SKGSTPKI---TNIDSENSKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AR 246
Query: 385 ALGTPIVGDYKYG 397
LG PI+GD KYG
Sbjct: 247 LLGCPILGDDKYG 259
>gi|346308976|ref|ZP_08851080.1| hypothetical protein HMPREF9457_02789 [Dorea formicigenerans
4_6_53AFAA]
gi|345901525|gb|EGX71324.1| hypothetical protein HMPREF9457_02789 [Dorea formicigenerans
4_6_53AFAA]
Length = 296
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 30/196 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLV----HRLDRESS 260
+ Y D +LVLNKP +P+ H ++N +++A A Y ++G + +RLDR++S
Sbjct: 83 IIYEDEDLLVLNKPAGMPI--HPSLNNYTNSIANALAYYFQSQGKPFIFRCCNRLDRDTS 140
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL ++ + S S+L SD+ K + + ++ Y A+ GS +G I A
Sbjct: 141 GLTIVSKHLVSGSIL----SDMTKYREV-----------HREYLAIARGSVTPSEGTIQA 185
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL G+ E I+ + E ++A+T Y+V+ NG S + LR T R HQ+R+
Sbjct: 186 PL-------GRKEGTIIERTVDWEHGEDAVTHYKVVKEA-NGHSLVSLRLETGRTHQIRI 237
Query: 381 HCAEALGTPIVGDYKY 396
H + LG P++GDY Y
Sbjct: 238 HM-KYLGYPLIGDYLY 252
>gi|260910942|ref|ZP_05917583.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 472 str. F0295]
gi|260634933|gb|EEX52982.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 472 str. F0295]
Length = 537
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 105/222 (47%), Gaps = 37/222 (16%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL---SYDYNEGPKLVHRL 255
D LR V Y D A++V++KP G L V + A L Y + P +VHRL
Sbjct: 332 DALR--VVYEDDALVVVSKP-----HGMLSVPGKGGGTSVAQLMRERYPDADSPLIVHRL 384
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG--SPKE 313
D+++SGL+L+ +TKE L F + K RY A++ G P+
Sbjct: 385 DQDTSGLMLIAKTKEMHRTLQLAFENHEVKK---------------RYVAVLDGLLPPER 429
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
+QG I PL+ LD + Q + A+T Y V+G G + + L PLT
Sbjct: 430 QQGEISLPLNSNYLDRPR-------QMVDWLQGKPAVTRYEVIG-QEEGRTIVALYPLTG 481
Query: 374 RKHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQMPRVDIE 413
R HQLRVHCA + L PI+GD YG HR + +++E
Sbjct: 482 RTHQLRVHCAHPDGLNLPILGDPLYGRKAHRMYLHAEAIEVE 523
>gi|334142863|ref|YP_004536071.1| pseudouridylate synthase [Novosphingobium sp. PP1Y]
gi|333940895|emb|CCA94253.1| pseudouridylate synthase [Novosphingobium sp. PP1Y]
Length = 232
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 33/198 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ + D LV++KP +PL G + + + +D L + P VHRLDR++S
Sbjct: 5 ILFEDGEALVIDKPAGLPLDRPRAGGVSLDDYIDTL-----KLGFQREPAPVHRLDRDTS 59
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R +++ F + + +RY +V G P E +G I
Sbjct: 60 GCLLLARNPKALKRFAAAFEE---------------RLVEKRYLGIVTGVPAEDEGTIAL 104
Query: 321 PLSKV-LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
LSKV DG R+I A+ + A+T +R L +G + IE RP T R HQ+R
Sbjct: 105 SLSKVSTAKDGW--RMIPARKG-----KPAVTHWRKLDTR-DGLTLIEFRPETGRTHQIR 156
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A LG P++GD YG
Sbjct: 157 VHAASGLGMPLLGDPVYG 174
>gi|407409624|gb|EKF32373.1| pseudouridylate synthase-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 407
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 23/197 (11%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALS---YDYNEGPKLVHRLDRESS 260
+V +++ ++V+NKP VP+ +P + + AA LS Y P + H LD+E+S
Sbjct: 160 MVLFKNEHVIVINKPHGVPM---MPTSDPQEMNIAAMLSAWKYTNATKPIVCHNLDKETS 216
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G +++ R+K + +L +F S+ YW +G P G I
Sbjct: 217 GCVVLARSKNAHRMLARMFVKRVVPNSV--------------YWGFCVGKPSVNFGRIRM 262
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
+ G II+A+ S + S+ + E+ V + S+I PLT R+HQ R+
Sbjct: 263 HFE---MTRGTKGDIIVARPSPTKTSKVGIAEFVVNASALEFGSFISFYPLTTRRHQERI 319
Query: 381 HCAEALGTPIVGDYKYG 397
A AL +P++GD KYG
Sbjct: 320 MAAHALRSPLLGDAKYG 336
>gi|410617784|ref|ZP_11328749.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola polaris
LMG 21857]
gi|410162915|dbj|GAC32887.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola polaris
LMG 21857]
Length = 318
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 27/203 (13%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHR 254
D++ L + + D ++VLNKP + + G + ++AL A + E LVHR
Sbjct: 87 DKVASLESHILFEDDLLIVLNKPSGMAVHGGSGLSFGVIEALRALRPQARFLE---LVHR 143
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LDR++SG L++ + + ++ K+L + D + M +RY ALV+G E
Sbjct: 144 LDRDTSGCLVIAKKRSAL-------------KALHEQLRD--KKMDKRYQALVVGEWPEN 188
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+ ++APL K +L G ER++ G + + T +RVL I G + +E P+T R
Sbjct: 189 RYKVNAPLLKNILKSG--ERLVSVDTEG----KPSETRFRVLNRYI-GSTLVEASPITGR 241
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQ+RVHC A G PI D KYG
Sbjct: 242 THQIRVHCLHA-GHPIACDDKYG 263
>gi|270308540|ref|YP_003330598.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Dehalococcoides sp. VS]
gi|270154432|gb|ACZ62270.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides sp. VS]
Length = 302
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 32/199 (16%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVH---NSMDALAAAALSYDYNEGPKLVHRLDRE 258
+ ++D +L++NKPP + P GH P H N + AL +D P +VHRLD++
Sbjct: 82 IIFQDKDLLLINKPPGLTVHPAPGH-PDHTLINGVLALEPKMEDFDDPLRPGIVHRLDKD 140
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SGLLL+ + +E+++ L+ F K +++ K Y LV G +G I
Sbjct: 141 TSGLLLVAKNRETLANLSAQF----KERTVRKY-----------YLTLVKGELHPAEGFI 185
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL + D ++I + N + A T Y+VL I G S +E++ T R HQ+
Sbjct: 186 EAPLGR---DPQNRQKIAVVSN-----GRHARTGYKVLR-YIQGYSLLEVKLETGRTHQI 236
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A A+G P+ GD YG
Sbjct: 237 RVHFA-AIGHPVAGDAIYG 254
>gi|383501974|ref|YP_005415333.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
australis str. Cutlack]
gi|378932985|gb|AFC71490.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
australis str. Cutlack]
Length = 303
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 103/202 (50%), Gaps = 32/202 (15%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRL 255
IDYL Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRL
Sbjct: 88 IDYLI----YEDDNLIAINKPAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRL 139
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+E+SGLLL+ + S S L A+ + + + Y+A+ G P +
Sbjct: 140 DKETSGLLLIAKNYLS-------------SVKLHDAFKEKL--IVKTYFAVTYGKPIKNV 184
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G + + + K G T ++ + E + A+T Y++L + N IE P+T R
Sbjct: 185 GEVRSNIEK---SKGSTPKM---TDIDSENGRLAITYYKLLKSLDNNLFLIEFTPVTGRM 238
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLR+H ++ LG PIVGD KYG
Sbjct: 239 HQLRLH-SKLLGCPIVGDDKYG 259
>gi|383483684|ref|YP_005392597.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
parkeri str. Portsmouth]
gi|378936038|gb|AFC74538.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
parkeri str. Portsmouth]
Length = 303
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+++SGLLL
Sbjct: 93 YADDNLIAINKPAGLATQGGTKINLSIDS----ALKYLNYKGADFKLVHRLDKKTSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHNAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y+VL + N IE P+T R HQLR+H
Sbjct: 194 ---SKGSTPKITDIDSENGKL-----AITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AKLLGCPILGDDKYG 259
>gi|307544580|ref|YP_003897059.1| 23S rRNA pseudouridylate synthase C [Halomonas elongata DSM 2581]
gi|307216604|emb|CBV41874.1| 23S rRNA pseudouridylate synthase C [Halomonas elongata DSM 2581]
Length = 315
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 110/227 (48%), Gaps = 38/227 (16%)
Query: 213 LVLNKPPKVPLKGHLPVHNSM-DALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKES 271
LVLNKP + + G V + +AL D+ E LVHRLDR++SG LL+ +++
Sbjct: 101 LVLNKPSGLAVHGGSGVKIGLIEALRQVREDLDFLE---LVHRLDRDTSGCLLLAKSR-- 155
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK 331
+LLT + +L + M +RY ALV G ++ + A L + D G
Sbjct: 156 TALLTL-------NTALKR------HEMTKRYLALVAGRWPARRDFVSARLDR--FDAGN 200
Query: 332 TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIV 391
ER + +G + A T + V G + +E P+T R HQ+RVH A A G P++
Sbjct: 201 GERRVRVDANG----KVARTRFAVR-ETFAGATLMEAEPVTGRTHQIRVHAAHA-GHPLL 254
Query: 392 GDYKYG----------WFVHRRWKQMPRVDI-EPTSGKPYKLRRPDG 427
GD KYG W + R + + EPTSGKP K+R P G
Sbjct: 255 GDDKYGSREGQRLAARWDLSRLFLHASELTFPEPTSGKPVKIRAPLG 301
>gi|410628423|ref|ZP_11339143.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola mesophila
KMM 241]
gi|410152029|dbj|GAC25912.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola mesophila
KMM 241]
Length = 318
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 27/203 (13%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHR 254
D++ L + + D ++VLNKP + + G + ++AL A + E LVHR
Sbjct: 87 DKVASLESHILFEDDLLIVLNKPSGMAVHGGSGLSFGVIEALRALRPQARFLE---LVHR 143
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LDR++SG L++ + + ++ K+L + D + M +RY ALV+G E
Sbjct: 144 LDRDTSGCLVIAKKRSAL-------------KNLHEQLRD--KKMDKRYQALVVGEWPEN 188
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+ ++APL K +L G ER++ + G + + T +RVL + G + +E P+T R
Sbjct: 189 RYKVNAPLLKNILKSG--ERLVSVDSEG----KPSETRFRVLDRFV-GATLVEASPITGR 241
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQ+RVHC A G PI D KYG
Sbjct: 242 THQIRVHCLHA-GHPIACDDKYG 263
>gi|397687641|ref|YP_006524960.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri DSM 10701]
gi|395809197|gb|AFN78602.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri DSM 10701]
Length = 317
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 26/201 (12%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLD 256
++ L + Y D A++VLNKP + + G + + ++AL L D E +LVHRLD
Sbjct: 90 LERLEAAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQ--LRPDAKE-LELVHRLD 146
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SGLL++ + + S+L L ++ + + +RY ALV G + +
Sbjct: 147 RDTSGLLMVAKKR---SMLRHLHQELR------------GDGVDKRYMALVRGRWETGKK 191
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+ APL K L G ER++ + G +EA+T +RVL + + +E RP+T R H
Sbjct: 192 QVSAPLLKNTLRSG--ERMVEVTDEG----KEALTLFRVLRRFGDFATLVEARPVTGRTH 245
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q+RVH A G I GD KYG
Sbjct: 246 QIRVHARHA-GHAIAGDSKYG 265
>gi|15892267|ref|NP_359981.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
conorii str. Malish 7]
gi|20139551|sp|Q92IS6.1|RLUC_RICCN RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|15619407|gb|AAL02882.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
conorii str. Malish 7]
Length = 303
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+++SGLLL
Sbjct: 93 YADDNLIAINKPAGLATQGGTKINLSIDS----ALKYLNYKGADFKLVHRLDKKTSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHNAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y+VL + N IE P+T R HQLR+H
Sbjct: 194 ---SKGSTPKITDIDSENGKL-----AITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AKLLGCPILGDDKYG 259
>gi|410663306|ref|YP_006915677.1| pseudouridine synthase Rlu family protein [Simiduia agarivorans SA1
= DSM 21679]
gi|409025663|gb|AFU97947.1| pseudouridine synthase Rlu family protein [Simiduia agarivorans SA1
= DSM 21679]
Length = 321
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 35/258 (13%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K+ ++ V + R+++ D +P G+ D
Sbjct: 45 GEVRVNKGRVKPEYKLAAGDL----------VRVPPIRLAQAGDQVPIGSALA-----DK 89
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + + Y D ++ +NKPP + + G V ++ L + E LVHRLDRE+
Sbjct: 90 LEQAILYEDEWLMAVNKPPGLAVHGGSGVQLGLIEGLRQMRPDCRFLE---LVHRLDRET 146
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG++L+ + + ++ L F + K+ N + + + + Y ALV G ++ I
Sbjct: 147 SGVILVAKKRTALKHLQAQFRE--------KSENLSLKGVLKTYLALVDGQWPLEKSRID 198
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL + L +G +R++ + G + + TE+ V+ ++ G + ++ RP+T R HQ+R
Sbjct: 199 APLLRTELPNG--DRLVKVSDEG----KPSRTEFSVV-QVLRGATLVQARPVTGRTHQIR 251
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G P++GD KYG
Sbjct: 252 VH-ARIAGCPLLGDEKYG 268
>gi|156402477|ref|XP_001639617.1| predicted protein [Nematostella vectensis]
gi|156226746|gb|EDO47554.1| predicted protein [Nematostella vectensis]
Length = 330
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 22/212 (10%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGH----LPVHNSMDALAAAALSYDYNEGPKLV 252
+ YL V + ++ ++ +NKP +P+ G L V ++ AA +Y P+L
Sbjct: 17 DAQYLADNVIFSNNDLIAINKPYGLPVHGGPGVVLSVAELLEEFAAIK---NYQNKPELA 73
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK 312
HRLD+ + +M V LLT NK+ + A + +RY A+ +G P+
Sbjct: 74 HRLDKYGTDYTIMLIDCSGVLLLTR-----NKTAAQKIAEMFQSRMVKKRYLAVSVGVPR 128
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQE--------AMTEYRVLGPMINGCS 364
++G I P+ + G ERII+ Q+ + +E A+T++++L + CS
Sbjct: 129 YEEGTISIPVGYGRV--GPWERIIIRQDLVGKTHKEITEAGFKQAITKFKILDENQSTCS 186
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+E+ P+T K Q+RVH A+AL PI+GD+K+
Sbjct: 187 LLEIEPITGHKQQIRVHLADALRCPILGDHKF 218
>gi|229586508|ref|YP_002845009.1| Ribosomal large subunit pseudouridine synthase [Rickettsia africae
ESF-5]
gi|228021558|gb|ACP53266.1| Ribosomal large subunit pseudouridine synthase [Rickettsia africae
ESF-5]
Length = 303
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+++SGLLL
Sbjct: 93 YADDNLIAINKPAGLATQGGTKINLSIDS----ALKYLNYKGADFKLVHRLDKKTSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y+VL + N IE P+T R HQLR+H
Sbjct: 194 ---SKGSTLKITDIDSENGKL-----AITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AKLLGCPILGDDKYG 259
>gi|238650483|ref|YP_002916335.1| hypothetical protein RPR_02200 [Rickettsia peacockii str. Rustic]
gi|238624581|gb|ACR47287.1| hypothetical protein RPR_02200 [Rickettsia peacockii str. Rustic]
Length = 303
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 28/193 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+++SGLLL
Sbjct: 93 YADDNLIAINKPAGLATQGGTKINLSIDS----ALKYLNYKGTDFKLVHRLDKKTSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
G T +I + E + A+T Y+VL + N IE P+T R HQLR+H A+
Sbjct: 194 ---SKGSTPKI---TDIDSENGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AK 246
Query: 385 ALGTPIVGDYKYG 397
LG PI+GD KYG
Sbjct: 247 LLGCPILGDDKYG 259
>gi|410694586|ref|YP_003625208.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Thiomonas sp. 3As]
gi|294341011|emb|CAZ89406.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Thiomonas sp. 3As]
Length = 329
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 99/202 (49%), Gaps = 34/202 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
V + D +L +NKP V + G V ++AL AA + + E LVHRLDR++SGLL
Sbjct: 90 VVFEDDFLLAINKPEGVAVHGGSGVSFGVIEALRAARPTAKFLE---LVHRLDRDTSGLL 146
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + +++ L + + K RY ALV G +I APL
Sbjct: 147 LIAKKRSALTTLHAALRERHADK---------------RYLALVAGLWTRGAVMIEAPLH 191
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRV--------LGPMINGCSWIELRPLTCRK 375
K LL +G+ + Q QE+ T++R LGP G S ++ R LT R
Sbjct: 192 KYLLANGERRVRVDVQQ-----GQESRTQFRSQEQFALPGLGPW-GGLSLMQARLLTGRT 245
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A G PIVGD KYG
Sbjct: 246 HQIRVHLAHC-GHPIVGDDKYG 266
>gi|410944386|ref|ZP_11376127.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
frateurii NBRC 101659]
Length = 257
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 97/186 (52%), Gaps = 28/186 (15%)
Query: 212 ILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKES 271
LVLNKP + + P ++ D++ +++ GP L HRLD ++SG LL+ R K +
Sbjct: 54 FLVLNKPAGLAVH---PGPSTQDSVETRLVTHPRG-GPWLAHRLDADTSGCLLIARRKTA 109
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK 331
+ F +S+ + K YW +V G+P + +G I APL + G
Sbjct: 110 LLEAQAAF----QSRQVRKL-----------YWTVVEGTPTDDEGEISAPLLRQSNPSG- 153
Query: 332 TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIV 391
R+I+ + A+T +RVLG G SW+EL LT R HQ R+HCA +LGTPIV
Sbjct: 154 -WRMIVDPKGDV-----AVTRWRVLG-RAEGRSWLELELLTGRTHQARIHCA-SLGTPIV 205
Query: 392 GDYKYG 397
GD YG
Sbjct: 206 GDRVYG 211
>gi|57233860|ref|YP_182086.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
ethenogenes 195]
gi|57224308|gb|AAW39365.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides ethenogenes 195]
Length = 300
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 32/199 (16%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVH---NSMDALAAAALSYDYNEGPKLVHRLDRE 258
+ ++D +L++NKPP + P GH P H N + AL +D P +VHRLD++
Sbjct: 80 IIFQDKDLLLINKPPGLTVHPAPGH-PDHTLINGVLALEPEMEDFDDPLRPGIVHRLDKD 138
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SGLLL+ + +E+++ L+ F K +++ K Y LV G +G I
Sbjct: 139 TSGLLLVAKNREALANLSAQF----KERTVRKY-----------YLTLVQGELHPAEGFI 183
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL + D ++I + N + A T Y+VL I G S +E++ T R HQ+
Sbjct: 184 EAPLGR---DPQNRQKIAVVSN-----GRPARTGYKVLR-YIQGYSLLEVKLETGRTHQI 234
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A A+G P+ GD YG
Sbjct: 235 RVHFA-AIGHPVAGDAVYG 252
>gi|436834378|ref|YP_007319594.1| pseudouridine synthase [Fibrella aestuarina BUZ 2]
gi|384065791|emb|CCG99001.1| pseudouridine synthase [Fibrella aestuarina BUZ 2]
Length = 243
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 26/198 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
V Y D+ +L++NK P V ++ S+ L + YN+ + +HRLDR S
Sbjct: 9 VVYEDNHLLIVNKEPGVLVQSDRTGDPSLTELLKEYVKEKYNKPGDVFLNPIHRLDRPVS 68
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL++ GRT ++ + +F K+ YWA+V P EK+G +
Sbjct: 69 GLVVFGRTSKATERMAEIFRKRQVQKT---------------YWAVVRQHPAEKKGKLVH 113
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K D+ K + + + + SQ A YR+LG IN +E+ PLT R HQ+R
Sbjct: 114 YLVK---DEAKNQ--VTTYDYEVPGSQRAELSYRLLG-KINEHYLLEVEPLTGRPHQIRA 167
Query: 381 HCAEALGTPIVGDYKYGW 398
A A+G PI GD KYG+
Sbjct: 168 QLA-AMGCPIRGDVKYGY 184
>gi|157828222|ref|YP_001494464.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165932925|ref|YP_001649714.1| hypothetical protein RrIowa_0413 [Rickettsia rickettsii str. Iowa]
gi|378721024|ref|YP_005285911.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Colombia]
gi|378722378|ref|YP_005287264.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Arizona]
gi|378723735|ref|YP_005288619.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hauke]
gi|379016712|ref|YP_005292947.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Brazil]
gi|379017524|ref|YP_005293759.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hino]
gi|379018851|ref|YP_005295085.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hlp#2]
gi|157800703|gb|ABV75956.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165908012|gb|ABY72308.1| hypothetical protein RrIowa_0413 [Rickettsia rickettsii str. Iowa]
gi|376325236|gb|AFB22476.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Brazil]
gi|376326048|gb|AFB23287.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Colombia]
gi|376327402|gb|AFB24640.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Arizona]
gi|376330090|gb|AFB27326.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hino]
gi|376331431|gb|AFB28665.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hlp#2]
gi|376332750|gb|AFB29983.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rickettsii str. Hauke]
Length = 303
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 28/193 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+++SGLLL
Sbjct: 93 YADDNLIAINKPAGLATQGGTKINLSIDS----ALKYLNYKGTDFKLVHRLDKKTSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
G T +I + E + A+T Y+VL + N IE P+T R HQLR+H A+
Sbjct: 194 ---SKGSTPKI---TDIDSENGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AK 246
Query: 385 ALGTPIVGDYKYG 397
LG PI+GD KYG
Sbjct: 247 LLGCPILGDDKYG 259
>gi|88801890|ref|ZP_01117418.1| ribosomal large subunit pseudouridine synthase A [Polaribacter
irgensii 23-P]
gi|88782548|gb|EAR13725.1| ribosomal large subunit pseudouridine synthase A [Polaribacter
irgensii 23-P]
Length = 556
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 30/225 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDAL-AAAALSYDYNEGPKLVHRLDRESSGLL 263
V Y D+A++V++KP ++ +P DA+ Y GP +VHRLD +SG+L
Sbjct: 355 VIYEDAAMIVVHKPTELL---SVPGKEIKDAVYTRMKEKYPNATGPLIVHRLDMSTSGIL 411
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ +TKE+ +L F VN++ + +RY AL+ G+ E G I PL
Sbjct: 412 LLTKTKEANKILQSQF--VNRT-------------IKKRYVALLDGNLSEDSGTIKLPL- 455
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
+V LDD + + + E T + VLG NG + + P+T R HQLRVH A
Sbjct: 456 RVDLDDRPKQLVDFSYGKAAE------TTWEVLGRE-NGKTRVYFYPVTGRTHQLRVHAA 508
Query: 384 --EALGTPIVGDYKYGWFVHRRWKQMPRVD-IEPTSGKPYKLRRP 425
+ L TPIVGD YG +R ++ + PT+ K P
Sbjct: 509 HKKGLNTPIVGDDLYGTKENRLHLHAEFIEFLHPTTNKKMSFTVP 553
>gi|379712094|ref|YP_005300433.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
philipii str. 364D]
gi|376328739|gb|AFB25976.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
philipii str. 364D]
Length = 303
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 28/193 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+++SGLLL
Sbjct: 93 YADDNLIAINKPAGLATQGGTKINLSIDS----ALKYLNYKGTDFKLVHRLDKKTSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
G T +I + E + A+T Y+VL + N IE P+T R HQLR+H A+
Sbjct: 194 ---SKGSTPKI---TDIDSENGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AK 246
Query: 385 ALGTPIVGDYKYG 397
LG PI+GD KYG
Sbjct: 247 LLGCPILGDDKYG 259
>gi|410641164|ref|ZP_11351687.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
chathamensis S18K6]
gi|410139291|dbj|GAC09874.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
chathamensis S18K6]
Length = 318
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 109/212 (51%), Gaps = 27/212 (12%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDY 245
P+ + D++ L + + D ++VLNKP + + G + ++AL A +
Sbjct: 78 PNAAPSTKLDKVASLESHILFEDDLLIVLNKPSGMAVHGGSGLSFGVIEALRALRPQARF 137
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
E LVHRLDR++SG L++ + + ++ K+L + D + M +RY A
Sbjct: 138 LE---LVHRLDRDTSGCLVIAKKRSAL-------------KNLHEQLRD--KKMDKRYHA 179
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
LV+G E + ++APL K +L G ER++ + G + + T +RVL + G +
Sbjct: 180 LVVGEWPENRYKVNAPLLKNILKSG--ERLVSVDSEG----KPSETRFRVLERYV-GATL 232
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+E P+T R HQ+RVHC A G PI D KYG
Sbjct: 233 VEASPITGRTHQIRVHCLHA-GHPIACDDKYG 263
>gi|51011075|ref|NP_001003495.1| RNA pseudouridylate synthase domain-containing protein 4 [Danio
rerio]
gi|82182079|sp|Q6DBR0.1|RUSD4_DANRE RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|50418114|gb|AAH78405.1| Zgc:92006 [Danio rerio]
Length = 358
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 115/268 (42%), Gaps = 63/268 (23%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP----KLVHRLDRESSGL 262
Y D I+ +NKP VPL + NS+ N P L H+L++E++G+
Sbjct: 93 YEDQNIIAINKPYDVPLHNINGIRNSIAECLPLLAKITDNMRPGSQLHLCHKLEKETTGV 152
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH--- 319
L++ +T+E+ + L + +Y A+ +G P +G+I
Sbjct: 153 LILAKTEEAAEHVQTLIQS---------------HKVEMKYLAITVGVPVPSEGVIDIPV 197
Query: 320 ----------------APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
+PL KV D R+ + A+T Y+VL +GC
Sbjct: 198 IERAVVGPQPHFKMALSPLFKVNEDGDGVTRV-----RAHRQAHAAVTRYQVLD-NTSGC 251
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLR 423
S +EL+PLT K+QLRVH A AL PI+GD+KY W ++ P KL
Sbjct: 252 SLVELQPLTGVKNQLRVHMALALTCPILGDHKYS-----HWSKL----------APQKL- 295
Query: 424 RPDGLDVQKGSVLSKVPL--LHLHCREL 449
P+G + G V SK LHLH R +
Sbjct: 296 -PEGTLRRLGLVQSKTRYLPLHLHSRRI 322
>gi|221633017|ref|YP_002522242.1| RluA family pseudouridine synthase [Thermomicrobium roseum DSM
5159]
gi|221156507|gb|ACM05634.1| pseudouridine synthase, RluA family [Thermomicrobium roseum DSM
5159]
Length = 322
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 144/317 (45%), Gaps = 58/317 (18%)
Query: 132 LVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTL 191
L+ M SFV+Q MK + E +P R+ R R +
Sbjct: 27 LIASRVTGMSRSFVQQ-LMKRGAILVNGEPCKPAQRV---------RYGDRLEVYLPPVE 76
Query: 192 NPNADEIDYLRRLVKYRDSAILVLNKPPKV---PLKGHLPVHNSM-DALAAAA--LSYDY 245
P E ++L V Y D I+V +KPP + P GH H ++ +AL A L
Sbjct: 77 PPTDLEPEFLPIPVIYEDDDIIVFDKPPGIVTHPAPGH--EHGTLVNALKAIRPDLQVQP 134
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
+ P +VHRLD+++SGLL++ +T E+ L +L + W ++ ++Y A
Sbjct: 135 SHRPGIVHRLDKDTSGLLVVAKT-EAARL------------ALLEQWQS--RSVVKKYTA 179
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
LV G + G I AP+S+ ER +A S + A+T +RVL +
Sbjct: 180 LVHGVVEPDSGTIDAPISR-----DPVERTKMAVVSW---GRPAITHFRVLE-RFRCATL 230
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG-----------WFVHRRWKQMPRVDIEP 414
+++ T R HQ+RVHCA +G P+VGD +YG F+H R+ + + P
Sbjct: 231 LDVTIETGRTHQIRVHCA-FIGHPVVGDSQYGGHRPFCVPVPRQFLHARYLRF----VHP 285
Query: 415 TSGKPYKLRRPDGLDVQ 431
T+G+ +L P D++
Sbjct: 286 TTGQAIELETPLPYDLR 302
>gi|342183220|emb|CCC92700.1| putative pseudouridylate synthase [Trypanosoma congolense IL3000]
Length = 406
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 184 DTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL-- 241
+ IP L+ A E + +V +++ ++V+NKP VP+ +P + + A+ L
Sbjct: 141 EHIPQFKLSAAARETAH--NMVLFKNEHVIVINKPHGVPM---MPTSDPQEMSIASMLPA 195
Query: 242 -SYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMY 300
Y P + H LD+E+SG +++ RTK + +L +F S+
Sbjct: 196 WKYTNMTKPIVCHNLDKETSGCVVLARTKNAHRMLGRMFVKRVVPNSV------------ 243
Query: 301 QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
YW +G P G + + G II+A+ S + S+ A+ E+ V +
Sbjct: 244 --YWGFCVGKPTVNFGRVRMHFD---ITRGSKGDIIIARPSPTKTSRVAIAEFVVNANAL 298
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
S+I PLT R+HQ R+ A AL P++GD KYG
Sbjct: 299 EFGSFISFYPLTTRRHQERIMSAHALRCPVLGDAKYG 335
>gi|90021267|ref|YP_527094.1| ribosomal large subunit pseudouridine synthase C [Saccharophagus
degradans 2-40]
gi|89950867|gb|ABD80882.1| ribosomal large subunit pseudouridine synthase C [Saccharophagus
degradans 2-40]
Length = 321
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 25/186 (13%)
Query: 213 LVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKES 271
LV+NKP + + G V ++AL A Y Y E LVHRLDR++SG +L+ + +
Sbjct: 99 LVVNKPAGLAVHGGSGVTLGLIEALRQAFPQYSYLE---LVHRLDRDTSGCILVAKKRSM 155
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK 331
+ L LF + +++RY ALVIG ++ ++ APL + L G
Sbjct: 156 LRYLQELFRGEKR--------------IHKRYLALVIGRWPSRRNLVDAPLLRKELQSG- 200
Query: 332 TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIV 391
ERI+ G + + TE+ V+ + +E RP+T R HQ+RVH A+ G P+V
Sbjct: 201 -ERIVRVSLDG----KPSKTEFNVVQRFGESATLVEARPITGRTHQIRVH-AQHQGHPLV 254
Query: 392 GDYKYG 397
GD KYG
Sbjct: 255 GDPKYG 260
>gi|399072757|ref|ZP_10750274.1| 23S RNA-specific pseudouridylate synthase, partial [Caulobacter sp.
AP07]
gi|398042464|gb|EJL35477.1| 23S RNA-specific pseudouridylate synthase, partial [Caulobacter sp.
AP07]
Length = 205
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 102/200 (51%), Gaps = 22/200 (11%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
EI + R LV + D ++ VLNKP + +G +++D L A D P+L+HRLD
Sbjct: 27 EIAFTRSLVIHEDDSVFVLNKPAGLSSQGGRIQAHTLDDLLWALARRDRPR-PRLIHRLD 85
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI-GSPKEKQ 315
R++SG++L RTK + + L K+L + + Y A+V G+P+ +
Sbjct: 86 RDTSGVILTARTKPAATFL---------GKAL------MGKRFRKTYLAIVTPGAPEPRG 130
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G I APL + + R+ +G ++ A + Y+ L G + +EL P T R
Sbjct: 131 GQIDAPLRRESIGREAYMRVC---EAGHPDAETARSRYKTLAAG-EGAALVELSPDTGRM 186
Query: 376 HQLRVHCAEALGTPIVGDYK 395
HQLRVH A ++G PI GD +
Sbjct: 187 HQLRVHMA-SIGRPIAGDSR 205
>gi|410646393|ref|ZP_11356844.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
agarilytica NO2]
gi|410133999|dbj|GAC05243.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola
agarilytica NO2]
Length = 318
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 109/212 (51%), Gaps = 27/212 (12%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDY 245
P+ + D++ L + + D ++VLNKP + + G + ++AL A +
Sbjct: 78 PNAAPSTKLDKVASLESHILFEDDLLIVLNKPSGMAVHGGSGLSFGVIEALRALRPQARF 137
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
E LVHRLDR++SG L++ + + ++ K+L + D + M +RY A
Sbjct: 138 LE---LVHRLDRDTSGCLVIAKKRSAL-------------KNLHEQLRD--KKMDKRYHA 179
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
LV+G E + ++APL K +L G ER++ + G + + T +RVL + G +
Sbjct: 180 LVVGEWPENRYKVNAPLLKNILKSG--ERLVSVDSEG----KPSETRFRVLERYV-GATL 232
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+E P+T R HQ+RVHC A G PI D KYG
Sbjct: 233 VEASPITGRTHQIRVHCLHA-GHPIACDDKYG 263
>gi|397689928|ref|YP_006527182.1| pseudouridine synthase [Melioribacter roseus P3M]
gi|395811420|gb|AFN74169.1| pseudouridine synthase [Melioribacter roseus P3M]
Length = 218
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 37/225 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D ++ +NKP + +P ++ A LS Y++ +VHRLD+E SG++L
Sbjct: 5 ILYEDENLIAVNKPEGI---AAIPENDKTVASLYNLLSEKYSKKIYIVHRLDKEVSGVML 61
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
E+ L+ LF N K+ Y ALVIG P+ ++GII+ PL +
Sbjct: 62 FAFNGETHRELSLLFESRNVHKT---------------YKALVIGKPEYEEGIINNPLRQ 106
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
+ R+ + + G + + T Y VL + + ++L PLT R+HQLRVH
Sbjct: 107 F-----GSGRMGVDEKKG----KPSETYYEVLN-YYDVHTLVKLNPLTGRRHQLRVHMY- 155
Query: 385 ALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTS------GKPYKLR 423
++G PI GD KYG K+ PR+ + S G+ +KLR
Sbjct: 156 SIGCPIAGDLKYGN--REIQKKYPRLMLHAESISFEYGGRTFKLR 198
>gi|109898450|ref|YP_661705.1| RluA family pseudouridine synthase [Pseudoalteromonas atlantica
T6c]
gi|109700731|gb|ABG40651.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
atlantica T6c]
Length = 318
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 27/203 (13%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHR 254
D++ L + + D ++VLNKP + + G + ++AL A + E LVHR
Sbjct: 87 DKVASLESHILFEDDLLIVLNKPSGMAVHGGSGLSFGVIEALRALRPQARFLE---LVHR 143
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LDR++SG L++ + + ++ K+L + D + M +RY ALV+G E
Sbjct: 144 LDRDTSGCLVIAKKRSAL-------------KNLHEQLRD--KKMDKRYQALVVGEWPEN 188
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+ ++APL K +L G ER++ G + + T +RVL +G + +E P+T R
Sbjct: 189 RYKVNAPLLKNILKSG--ERLVSVDTEG----KPSETRFRVLD-RFSGATLVEASPITGR 241
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQ+RVHC A G PI D KYG
Sbjct: 242 THQIRVHCLHA-GHPIACDDKYG 263
>gi|429214948|ref|ZP_19206110.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
M1]
gi|428154175|gb|EKX00726.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
M1]
Length = 318
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 123/267 (46%), Gaps = 58/267 (21%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +V V + R+++R + P ++
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDV----------VRVPPLRLAERDEPAPLAQ-----GLLER 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + Y D A++V+NKP + + G + LSY E +
Sbjct: 93 LEAAIVYEDKALIVINKPAGIAVHG------------GSGLSYGVIEAFRQLRPEAKDLE 140
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SGLL++ + + S+L L + + K RY ALV GS
Sbjct: 141 LVHRLDRDTSGLLMIAKKR---SMLRHLHDALRNEHVVDK-----------RYHALVRGS 186
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ I APL K L G ER++ G ++A+TE++VL + + +E RP
Sbjct: 187 WPAAKKQIRAPLLKNNLRSG--ERMVEVNVEG----KDALTEFKVLRRFGDFATLVEARP 240
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVH A G I GD KYG
Sbjct: 241 ITGRTHQIRVHAKHA-GHSIAGDAKYG 266
>gi|407699820|ref|YP_006824607.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii str. 'Black Sea 11']
gi|407248967|gb|AFT78152.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii str. 'Black Sea 11']
Length = 313
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 124/267 (46%), Gaps = 60/267 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ ++++ PV + E + PS P D+I
Sbjct: 46 GEVRVNKGRVKPEYKLQADDLIR-----IPPVRVSEDAPA------PS----PKLDKIAS 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + + D ILV+NKP + + G + LS+ EG +
Sbjct: 91 LESHILFEDDRILVINKPSGMAVHG------------GSGLSFGLIEGLRALRPDAKFME 138
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG +L+ + + S L + + K M +RY ALV G
Sbjct: 139 LVHRLDRDTSGCILIAKKR---SALRHMHEQLRTGK------------MDKRYNALVAGE 183
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ + + APL K +L G ER++ + G + + T YR+L + G + +E P
Sbjct: 184 WPKTRFKVKAPLRKNVLQSG--ERMVSVSDDG----KPSETRYRILEEYV-GATLVEASP 236
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVHC A G PI D KYG
Sbjct: 237 ITGRTHQIRVHCLHA-GHPIACDPKYG 262
>gi|71744254|ref|XP_803639.1| pseudouridylate synthase [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70830922|gb|EAN76427.1| pseudouridylate synthase, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 406
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL---SY 243
P L+ A E+ + +V +++ ++V+NKP +P+ +P + + AA L +
Sbjct: 144 PKFKLSATAREMAH--NMVLFKNEHVIVINKPHGLPM---MPTDDPQEMSIAAMLPAWKF 198
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
P + H LDRE+SG +++ RT+ + +L +F S+ Y
Sbjct: 199 TNVAKPVVCHNLDRETSGCVVLARTRNAHRMLGRMFVKRVVPNSV--------------Y 244
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
W+ +G P G + + G II+A+ S + S+ A+ E+ V +
Sbjct: 245 WSFCVGKPTVNYGRVRMHFD---ITRGNKGDIIVARPSPTKTSKVAIAEFVVNASALEFG 301
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
S+I PLT R+HQ R+ A AL P++GD KYG
Sbjct: 302 SFISFYPLTTRRHQERIMAAHALRCPVLGDAKYG 335
>gi|429738663|ref|ZP_19272457.1| pseudouridine synthase, RluA family [Prevotella saccharolytica
F0055]
gi|429159499|gb|EKY02004.1| pseudouridine synthase, RluA family [Prevotella saccharolytica
F0055]
Length = 564
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 104/220 (47%), Gaps = 36/220 (16%)
Query: 207 YRDSAILVLNKPP---KVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
Y D A+ V+ KP VP K H + + ++ P +VHRLDR++SGLL
Sbjct: 340 YEDDALAVICKPAGMLSVPGKSH-----TCSVYDIVKERFKESDSPLMVHRLDRDTSGLL 394
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS-PKEK-QGIIHAP 321
++ +TK+ L F K L K +RY AL+ G P++K QG I P
Sbjct: 395 IIAKTKQCHKQLQAAF-----RKKLVK----------KRYIALLEGVLPEDKQQGRIELP 439
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L LD + Q + + A+T+Y VLG NG + I L P T R HQLRVH
Sbjct: 440 LMPDYLDRPR-------QTVNHQMGKPAVTDYEVLG-RSNGHTLIALYPQTGRTHQLRVH 491
Query: 382 CAE--ALGTPIVGDYKYGWFVHRRWKQMPRVDIE-PTSGK 418
CA L PI+GD YG R + ++ + P SGK
Sbjct: 492 CAHPAGLDMPILGDTLYGKKADRMYLHAEQICFQHPESGK 531
>gi|261331103|emb|CBH14092.1| pseudouridylate synthase, putative [Trypanosoma brucei gambiense
DAL972]
Length = 406
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL---SY 243
P L+ A E+ + +V +++ ++V+NKP +P+ +P + + AA L +
Sbjct: 144 PKFKLSATAREMAH--NMVLFKNEHVIVINKPHGLPM---MPTDDPQEMSIAAMLPAWKF 198
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
P + H LDRE+SG +++ RT+ + +L +F S+ Y
Sbjct: 199 TNVAKPVVCHNLDRETSGCVVLARTRNAHRMLGRMFVKRVVPNSV--------------Y 244
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
W+ +G P G + + G II+A+ S + S+ A+ E+ V +
Sbjct: 245 WSFCVGKPTVNYGRVRMHFD---ITRGNKGDIIVARPSPTKTSKVAIAEFVVNASALEFG 301
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
S+I PLT R+HQ R+ A AL P++GD KYG
Sbjct: 302 SFISFYPLTTRRHQERIMAAHALRCPVLGDAKYG 335
>gi|332535383|ref|ZP_08411176.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
haloplanktis ANT/505]
gi|359453509|ref|ZP_09242820.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20495]
gi|414068909|ref|ZP_11404906.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
sp. Bsw20308]
gi|332035211|gb|EGI71720.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
haloplanktis ANT/505]
gi|358049325|dbj|GAA79069.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20495]
gi|410808748|gb|EKS14717.1| ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
sp. Bsw20308]
Length = 319
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 124/267 (46%), Gaps = 59/267 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP+ K++ ++V+ P+ R+++R + +PS D++
Sbjct: 46 GEVRVNKKRIKPVYKLQLDDVLR-----IAPI-----RVAEREEFVPS-----KLDKVTR 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + + D ++V+NKP + + G + LSY E +
Sbjct: 91 LENDILFEDKYLIVINKPSGMAVHG------------GSGLSYGLIEALRALRPEERSLE 138
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG LL+ + + S+LT L + + + M + YWALV G
Sbjct: 139 LVHRLDRDTSGCLLIAKRR---SVLTALHEQLRE------------KTMEKNYWALVEGQ 183
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
K + L K L G ER++ N+ + + T ++VL N CS ++ P
Sbjct: 184 WDSKTKNVTEGLRKNTLKSG--ERVVRVDNT---EGKPSHTRFKVL-ERFNDCSLVQASP 237
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVH + G PI D KYG
Sbjct: 238 VTGRTHQIRVH-TQCKGHPIACDDKYG 263
>gi|373470090|ref|ZP_09561235.1| pseudouridine synthase, RluA family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371763058|gb|EHO51557.1| pseudouridine synthase, RluA family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 296
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 107/200 (53%), Gaps = 28/200 (14%)
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY--DYNEGPKLVHRLDR 257
+++ +KY D I+V+NKP +P+ H ++N +++A A + Y D N + ++RLDR
Sbjct: 76 FIKLDIKYEDEDIVVVNKPSDMPI--HPSLNNYENSMANALMYYYRDKNFVFRCINRLDR 133
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
+++GL ++ + S +L + + + + +N E GS KE G
Sbjct: 134 DTTGLSVVAKHFLSAGILNTFM----QRREIKRVYNAIVEDD---------GSLKE-SGT 179
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ AP+++ DD +R + ++ Q A+T Y+VL + NG S IELR T R HQ
Sbjct: 180 VDAPIARE--DDTLIKRRVSSE------GQRAITNYKVLKRL-NGASLIELRLDTGRTHQ 230
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH + +G P+VGDY Y
Sbjct: 231 IRVHMS-YIGHPLVGDYLYN 249
>gi|359435638|ref|ZP_09225827.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20652]
gi|357917693|dbj|GAA62076.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20652]
Length = 319
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 141/306 (46%), Gaps = 63/306 (20%)
Query: 105 HVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANM---GDSFVEQGQMKPIRKIKTNEV 161
VT V+ + + + D+ + +H KG+ + + G+ V + ++KP+ K++ ++V
Sbjct: 8 QVTYVTINEDHLGQRIDNFLITHL-KGVPKSAIYKLLRKGEVRVNKKRIKPVYKLQLDDV 66
Query: 162 MEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKV 221
+ P+ R+++R + +PS D++ L + + D ++V+NKP +
Sbjct: 67 LR-----IAPI-----RVAEREEFVPS-----KLDKVTRLENDILFEDKYLIVINKPSGM 111
Query: 222 PLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLLLMGRTKES 271
+ G + LSY E + LVHRLDR++SG LL+ + +
Sbjct: 112 AVHG------------GSGLSYGLIEALRALRPEERSLELVHRLDRDTSGCLLIAKRR-- 157
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK 331
S+LT L + + + M + YWALV G K + L K L G
Sbjct: 158 -SVLTALHEQLRE------------KTMEKNYWALVEGQWDSKTKNVTEGLRKNTLKSG- 203
Query: 332 TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIV 391
ER++ N+ + + T ++VL N CS ++ P+T R HQ+RVH + G PI
Sbjct: 204 -ERVVRVDNT---EGKPSHTRFKVL-ERFNDCSLVQASPVTGRTHQIRVH-TQCKGHPIA 257
Query: 392 GDYKYG 397
D KYG
Sbjct: 258 CDDKYG 263
>gi|374814776|ref|ZP_09718513.1| ribosomal large subunit pseudouridine synthase C [Treponema
primitia ZAS-1]
Length = 219
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 44/209 (21%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
V + + +VLNKP + ++G V S+D+L LS +Y+ P LVHRLD+++SG++L
Sbjct: 6 VLFENDQCMVLNKPAGLAVQGGEGVGTSLDSL----LSAEYSPRPLLVHRLDKDTSGVIL 61
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ +TKE+ +L +F ++ +S ++ + ++Y A+ G P + G I L
Sbjct: 62 VAKTKEAAALFAGIF-----ARPVSVTFS-----VQKQYLAVCAGRPTPESGTIETDL-- 109
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC------SWIELRPLTCRKHQL 378
+ G A+++A T YR ING S +EL T R HQ+
Sbjct: 110 --------------EIRG--AARKAKTSYR----RINGVSHLSDFSLLELELGTGRMHQI 149
Query: 379 RVHCAEALGTPIVGDYKYGWF-VHRRWKQ 406
R H A ++G PI+GD KYG F +++R ++
Sbjct: 150 RRHLA-SIGHPILGDDKYGDFALNKRLRK 177
>gi|374319064|ref|YP_005065562.1| Ribosomal large subunit pseudouridine synthase [Rickettsia slovaca
13-B]
gi|383750988|ref|YP_005426089.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
slovaca str. D-CWPP]
gi|360041612|gb|AEV91994.1| Ribosomal large subunit pseudouridine synthase [Rickettsia slovaca
13-B]
gi|379774002|gb|AFD19358.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
slovaca str. D-CWPP]
Length = 303
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+++SGLLL
Sbjct: 93 YADDNLIAINKPAGLATQGGTKINLSIDS----ALKYLNYKGADFKLVHRLDKKTSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y+VL + N IE P+T R HQLR+H
Sbjct: 194 ---SKGSTPKITDIDSENGKL-----AITYYKVLKSLDNHLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AKLLGCPILGDDKYG 259
>gi|419953561|ref|ZP_14469705.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri TS44]
gi|387969621|gb|EIK53902.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri TS44]
Length = 317
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 26/201 (12%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLD 256
++ L + Y D A++VLNKP + + G + + ++AL L D E +LVHRLD
Sbjct: 90 LERLEAAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQ--LRPDAKE-LELVHRLD 146
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SGLL++ + + S+L L + + + +RY ALV G + +
Sbjct: 147 RDTSGLLMIAKKR---SMLRHLHQALR------------GDGVDKRYMALVRGRWETSKK 191
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
++APL K L G ER++ G +EA+T +RVL + + +E RP+T R H
Sbjct: 192 QVNAPLLKNTLRSG--ERMVEVTEDG----KEALTLFRVLRRFGDFATLVEARPVTGRTH 245
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q+RVH A G I GD KYG
Sbjct: 246 QIRVHARHA-GHSIAGDSKYG 265
>gi|239947789|ref|ZP_04699542.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922065|gb|EER22089.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 303
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 28/193 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G + S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDNLIAINKPAGLATQGGSKIKLSIDS----ALKYLNYKGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + L + DV K K + K Y+A+ G P + G + + + K
Sbjct: 149 IAKN----YLSSVKLHDVFKEKLVVKT-----------YFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
K I E + A+T Y++L P+ N IE P+T R HQLR+H ++
Sbjct: 194 SKRSTPKITDI------DSENGKLAITYYKLLKPLDNNLFLIEFTPVTGRMHQLRLH-SK 246
Query: 385 ALGTPIVGDYKYG 397
LG PI+GD KYG
Sbjct: 247 LLGCPILGDDKYG 259
>gi|359399277|ref|ZP_09192281.1| pseudouridylate synthase [Novosphingobium pentaromativorans US6-1]
gi|357599317|gb|EHJ61031.1| pseudouridylate synthase [Novosphingobium pentaromativorans US6-1]
Length = 232
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 95/198 (47%), Gaps = 33/198 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ + D LV++KP +PL G + + + +D L + P VHRLDR++S
Sbjct: 5 ILFEDGEALVIDKPAGLPLDRPRAGGVSLDDYIDTL-----KLGFQREPAPVHRLDRDTS 59
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R +++ F + + +RY +V G P + +G I
Sbjct: 60 GCLLLARNPKALKRFAAAFEE---------------RLVEKRYLGIVTGVPADDEGTIAL 104
Query: 321 PLSKV-LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
LSKV DG R+I A+ + A+T +R L +G + IE RP T R HQ+R
Sbjct: 105 SLSKVSTAKDGW--RMIPARKG-----KPAVTHWRKLDTR-DGLTLIEFRPETGRTHQIR 156
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A LG P++GD YG
Sbjct: 157 VHAASGLGMPLLGDPVYG 174
>gi|150008790|ref|YP_001303533.1| ribosomal large subunit pseudouridine synthase A [Parabacteroides
distasonis ATCC 8503]
gi|149937214|gb|ABR43911.1| ribosomal large subunit pseudouridine synthase A [Parabacteroides
distasonis ATCC 8503]
Length = 549
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 100/205 (48%), Gaps = 33/205 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAA---AALSYDYNEGPKLVHRLDRESSG 261
+ Y D +LV+NKP +G L V DA + ++ Y GP +VHRLD +SG
Sbjct: 342 ILYEDDYLLVINKP-----EGMLSVPGKGDADSVYQRLSILYPEATGPIIVHRLDMATSG 396
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
LLL +TKE+ L F K++++ K RY AL+ G + +G I P
Sbjct: 397 LLLAAKTKEAHQNLQAQF----KNRTIQK-----------RYIALLEGEVPQDEGEIRLP 441
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L LD R I+++ G + A+T YRVL +G + I P T R HQLRVH
Sbjct: 442 LCPDPLD---RPRQIVSEEFG----KPALTHYRVLE-RTSGKTLIAFYPQTGRTHQLRVH 493
Query: 382 CAEALG--TPIVGDYKYGWFVHRRW 404
A LG PI+GD YG R +
Sbjct: 494 AAHPLGLHCPILGDELYGRKAERLY 518
>gi|359442985|ref|ZP_09232840.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20429]
gi|358035193|dbj|GAA69089.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20429]
Length = 319
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 140/306 (45%), Gaps = 63/306 (20%)
Query: 105 HVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANM---GDSFVEQGQMKPIRKIKTNEV 161
VT V+ + + + D+ + +H KG+ + + G+ V + ++KP+ K++ +V
Sbjct: 8 QVTYVTINEDHLGQRIDNFLITHL-KGVPKSAIYKLLRKGEVRVNKKRIKPVYKLQLEDV 66
Query: 162 MEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKV 221
+ P+ R+++R + +PS D++ L + + D ++V+NKP +
Sbjct: 67 LR-----IAPI-----RVAEREEFVPS-----KLDKVTRLENDILFEDKYLIVINKPSGM 111
Query: 222 PLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLLLMGRTKES 271
+ G + LSY E + LVHRLDR++SG LL+ + +
Sbjct: 112 AVHG------------GSGLSYGLIEALRALRPEERSLELVHRLDRDTSGCLLIAKRR-- 157
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK 331
S+LT L + + + M + YWALV G K + L K L G
Sbjct: 158 -SVLTALHEQLRE------------KTMEKNYWALVEGQWDSKTKNVTEGLRKNTLKSG- 203
Query: 332 TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIV 391
ER++ N+ + + T ++VL N CS ++ P+T R HQ+RVH + G PI
Sbjct: 204 -ERVVRVDNT---EGKPSHTRFKVL-ERFNDCSLVQASPVTGRTHQIRVH-TQCKGHPIA 257
Query: 392 GDYKYG 397
D KYG
Sbjct: 258 CDDKYG 263
>gi|330991266|ref|ZP_08315217.1| Putative RNA pseudouridine synthase [Gluconacetobacter sp. SXCC-1]
gi|329761285|gb|EGG77778.1| Putative RNA pseudouridine synthase [Gluconacetobacter sp. SXCC-1]
Length = 242
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 93/197 (47%), Gaps = 36/197 (18%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAA----LSYDYNEGPKLVHRLDRESS 260
V Y DS +VL+KPP LPVH + + L + GP L HRLD++++
Sbjct: 11 VLYHDSRFIVLDKPPG------LPVHPARAGGPSVEDWFPLISRHRNGPWLAHRLDQDTA 64
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++ K+++ F+ K+ YWA+V G P G + A
Sbjct: 65 GCLVVALRKQALVAAQECFAAGRARKT---------------YWAIVQGMPAGPSGTVDA 109
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC----SWIELRPLTCRKH 376
PL++V + G+ R+ + G Q A T +R L +G SW+EL T R H
Sbjct: 110 PLARV--EQGRQWRMQVTARGG----QPARTRWRTLATGQDGAGNPISWLELVLETGRTH 163
Query: 377 QLRVHCAEALGTPIVGD 393
Q R HCA ALG PI+GD
Sbjct: 164 QARAHCA-ALGCPILGD 179
>gi|87118928|ref|ZP_01074826.1| ribosomal large subunit pseudouridine synthase C [Marinomonas sp.
MED121]
gi|86165319|gb|EAQ66586.1| ribosomal large subunit pseudouridine synthase C [Marinomonas sp.
MED121]
Length = 322
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 26/193 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D+ ++V+NKP + + G ++ + + S + + +LVHRLDR++SGL++
Sbjct: 100 IVYEDAGLMVVNKPSGLAVHGGSGLNFGLVEVVRQLRSKE--KSIELVHRLDRDTSGLIM 157
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS-PKEKQGIIHAPLS 323
+ + + S+L L + + + + + K Y ALV GS PK KQ ++APL
Sbjct: 158 ISKKR---SVLKQLHAALREKEGVQKT-----------YQALVYGSWPKRKQQ-VNAPLL 202
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K L G ERI+ G +E++T +++L G S +E P+T R HQ+RVH
Sbjct: 203 KNELKSG--ERIVKVHTEG----KESLTRFKLL-RQFEGYSLVECEPVTGRTHQIRVHTL 255
Query: 384 EALGTPIVGDYKY 396
A G PIVGD KY
Sbjct: 256 HA-GYPIVGDDKY 267
>gi|77360755|ref|YP_340330.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas haloplanktis
TAC125]
gi|76875666|emb|CAI86887.1| 23S rRNA pseudouridylate synthase, in E. coli modifies positions
955, 2504, and 2580 in 23 S ribosomal RNA
[Pseudoalteromonas haloplanktis TAC125]
Length = 319
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP+ K++ +V+ P+ R+++R + +PS D++
Sbjct: 46 GEVRVNKKRIKPVYKLQLEDVLR-----IAPI-----RVAEREEFVPS-----KLDKVTR 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + + D ++V+NKP + + G + S + A + +LVHRLDR++S
Sbjct: 91 LENDIIFEDKYLIVINKPSGMAVHGGSGL--SYGLIEALRVLRPEERSLELVHRLDRDTS 148
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ + + S+LT L + + + M + YWALV G K +
Sbjct: 149 GCLLIAKRR---SVLTALHEQLRE------------KTMEKNYWALVDGQWDSKTKNVTE 193
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K L G ER++ N+ + + T ++VL N CS ++ P+T R HQ+RV
Sbjct: 194 GLRKNTLKSG--ERVVRVDNT---EGKPSHTRFKVL-ERFNECSLVQASPVTGRTHQIRV 247
Query: 381 HCAEALGTPIVGDYKYG 397
H + G PI D KYG
Sbjct: 248 H-TQCKGHPIACDDKYG 263
>gi|308321724|gb|ADO28005.1| RNA pseudouridylate synthase domain-containing protein 4 [Ictalurus
furcatus]
Length = 386
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 142/301 (47%), Gaps = 55/301 (18%)
Query: 170 LPVSMVEGRISK-RYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLP 228
+PVS V+ +++ R T +++PN L + + Y+D ++ +NKP VP+
Sbjct: 84 VPVSPVQRNVAELRQLTQQLQSVHPNVFA-KALSKSILYQDQNLIAINKPYGVPVYSTGG 142
Query: 229 VHNSM-DALAAAALSYDYNEGPKLVH---RLDRESSGLLLMGRTKESVSLLTWLFSDVNK 284
+ NS+ ++L A D +G +H L+++++G+L + T+E+ + L
Sbjct: 143 IGNSIAESLPVLAKIIDCTKGGSKLHVCYNLEKDTTGVLFLAWTEETAERIHNLIRSHQA 202
Query: 285 SKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL-SKVLLDDGKTERIILA----- 338
K RY + +G P +G+I P+ K ++ D ++ L+
Sbjct: 203 EK---------------RYMVITVGVPVPSEGVIDIPIIEKEVMGDQHHFKMGLSPLYRP 247
Query: 339 --QNSGL------EASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
+ GL +Q A+T Y+VL +GCS +E +P+T KHQLRVH A AL PI
Sbjct: 248 TEEGDGLVRVRANRQAQSAVTRYKVLDSS-SGCSLVEFQPVTGVKHQLRVHMALALACPI 306
Query: 391 VGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPL--LHLHCRE 448
+GD+KY W ++ P KL P+G+ + G SK LHLH R+
Sbjct: 307 LGDHKYS-----HWNKLA----------PQKL--PEGVLRRLGLEQSKTRHFPLHLHVRQ 349
Query: 449 L 449
+
Sbjct: 350 I 350
>gi|417399915|gb|JAA46938.1| Putative rna pseudouridylate synthase [Desmodus rotundus]
Length = 377
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 65/296 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L+R + ++D ++V+NKP VP+ G L + + + LA L E L HRLD
Sbjct: 95 LKRGIVHQDQDLVVINKPYGVPVHGGPGVQLCISDVLPVLAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ KE + LF +++ ++K +YWA+ + P G
Sbjct: 154 KETTGVMVLAWEKEVAHQVQELF----RTRQVTK-----------KYWAVTVRVPVPAAG 198
Query: 317 IIHAPL-----------SKVLL------DDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ K+ L DDGK R+ ++ + + A+T+Y+VL
Sbjct: 199 VVDIPIVEKEVQGQQQHHKMTLSPSYRVDDGKMVRVRTSRKASV-----AVTQYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + ++G
Sbjct: 254 VSS-ALLELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNKLAPQKL--SAGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
KL P + +P LHLH R+L + P L S+ + L V +P
Sbjct: 306 KKLGLPQ-------AKARHIP-LHLHARQL----VLPALGSREEE---LSLVCRLP 346
>gi|392534508|ref|ZP_10281645.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas arctica A
37-1-2]
Length = 319
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 140/306 (45%), Gaps = 63/306 (20%)
Query: 105 HVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANM---GDSFVEQGQMKPIRKIKTNEV 161
VT V+ + + + D+ + +H KG+ + + G+ V + ++KP+ K++ +V
Sbjct: 8 QVTYVTINEDHLGQRIDNFLITHL-KGVPKSAIYKLLRKGEVRVNKKRIKPVYKLQLEDV 66
Query: 162 MEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKV 221
+ P+ R+++R + +PS D++ L + + D ++V+NKP +
Sbjct: 67 LR-----IAPI-----RVAEREEFVPS-----KLDKVTRLENDILFEDKYLIVINKPSGM 111
Query: 222 PLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLLLMGRTKES 271
+ G + LSY E + LVHRLDR++SG LL+ + +
Sbjct: 112 AVHG------------GSGLSYGLIEALRALRPEERSLELVHRLDRDTSGCLLIAKRR-- 157
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK 331
S+LT L + + + M + YWALV G K + L K L G
Sbjct: 158 -SVLTALHEQLRE------------KTMEKNYWALVEGQWDSKTKNVTEGLRKNTLKSG- 203
Query: 332 TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIV 391
ER++ N+ + + T ++VL N CS ++ P+T R HQ+RVH + G PI
Sbjct: 204 -ERVVRVDNT---EGKPSHTRFKVL-ERFNDCSLVQASPVTGRTHQIRVH-TQCKGHPIA 257
Query: 392 GDYKYG 397
D KYG
Sbjct: 258 CDDKYG 263
>gi|406907642|gb|EKD48415.1| hypothetical protein ACD_64C00330G0003 [uncultured bacterium]
Length = 320
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 38/205 (18%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSY-----------DYNEGPKLV 252
+ Y + L++NKP L VH SM + AA + + Y + P +V
Sbjct: 95 IVYENPHFLIINKP------AGLLVHPTSMKSTAATLVDWLLMNYASIEDVGYVDRPGIV 148
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK 312
HRLD+++SGLL++ RT + + LF D SK+ Y+A+V G P
Sbjct: 149 HRLDKDTSGLLIVPRTNYAHGIFADLFRDRKMSKT---------------YYAIVQGHP- 192
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
EKQG+I P+ + + K + S ++A T Y+VL + + IE++P+T
Sbjct: 193 EKQGVITLPIGRDPILKTKMTSKQFPERS--MKVRDATTHYKVL-EYFDDAALIEVKPVT 249
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+RVH A+G P++GD YG
Sbjct: 250 GRTHQIRVHFV-AIGHPLIGDAVYG 273
>gi|381394076|ref|ZP_09919794.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola punicea
DSM 14233 = ACAM 611]
gi|379330348|dbj|GAB54927.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola punicea
DSM 14233 = ACAM 611]
Length = 315
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 125/258 (48%), Gaps = 43/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + + KP K++ N+ + PV + D +P+ LN N+ + Y
Sbjct: 45 GEVRVNKKRAKPDYKLQINDYLR-----IPPVKI---------DDMPTQQLNVNS--LAY 88
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRES 259
++ + Y D +LV+NKP + + G + + ++AL A + Y E LVHRLDR++
Sbjct: 89 IKDAIIYEDDRLLVINKPSGMAVHGGSGLSYGLIEALRALRPNSPYLE---LVHRLDRDT 145
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG +++ + + ++ L D + M + Y ALV G EK+ +
Sbjct: 146 SGCIVLAKKRSALRHLHEQLRD---------------KKMDKTYHALVAGHWPEKRSKVS 190
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
A L K + G ER++ A +G + + T + V+G + S +E +P+T R HQ+R
Sbjct: 191 AGLQKNQIQSG--ERMVFADENG----KHSETRFSVIGYYPH-ASLLEAKPITGRTHQIR 243
Query: 380 VHCAEALGTPIVGDYKYG 397
VHC A G I D KYG
Sbjct: 244 VHCQFA-GHAIANDSKYG 260
>gi|119588079|gb|EAW67675.1| RNA pseudouridylate synthase domain containing 4, isoform CRA_a
[Homo sapiens]
gi|119588080|gb|EAW67676.1| RNA pseudouridylate synthase domain containing 4, isoform CRA_a
[Homo sapiens]
Length = 377
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 65/296 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFRT---------------RQVVKKYWAITVHVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +DDGK ++ ++N+ Q A+T+Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA-----QVAVTQYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
KL GL+ K + LHLH R+L + P L S G + L V +P
Sbjct: 306 KKL----GLEQSKARYIP----LHLHARQL----ILPALGS---GKEELNLVCKLP 346
>gi|71735436|ref|YP_273876.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257487558|ref|ZP_05641599.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|416015325|ref|ZP_11562938.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. glycinea str. B076]
gi|416028270|ref|ZP_11571326.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422404569|ref|ZP_16481621.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422595279|ref|ZP_16669567.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|422607842|ref|ZP_16679836.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. mori str. 301020]
gi|71555989|gb|AAZ35200.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298159219|gb|EFI00277.1| Ribosomal large subunit pseudouridine synthase C [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320325303|gb|EFW81370.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. glycinea str. B076]
gi|320327712|gb|EFW83720.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330877844|gb|EGH11993.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330891478|gb|EGH24139.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. mori str. 301020]
gi|330985584|gb|EGH83687.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 318
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQA-----LLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAA-AALSYDYNEGPKLVHRLDRES 259
L + Y D A++VLNKP + + G + S + A L D E +LVHRLDR++
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGL--SFGVIEAFRQLRPDAKE-LELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGI 317
SGLL+ + K +S+ + ++A + + +RY ALV G+ Q
Sbjct: 150 SGLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATAQKQ 192
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ
Sbjct: 193 VRAPLMKSNLRSG--ERMVEVNEEG----KEALTIFKVLRRFGDFATMVEAKPVTGRTHQ 246
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 247 IRVHTLHA-GHAIAGDTKYG 265
>gi|409398216|ref|ZP_11249037.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
Chol1]
gi|409117349|gb|EKM93783.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
Chol1]
Length = 317
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 104/201 (51%), Gaps = 26/201 (12%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLD 256
++ L + Y D A++VLNKP + + G + + ++AL L D E +LVHRLD
Sbjct: 90 LERLEAAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQ--LRPDAKE-LELVHRLD 146
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SGLL++ + + S+L L + + + +RY ALV G + +
Sbjct: 147 RDTSGLLMIAKKR---SMLRHLHQALR------------GDGVDKRYMALVRGRWETSKK 191
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+ APL K L G ER++ G +EA+T +RVL + + +E RP+T R H
Sbjct: 192 QVSAPLLKNTLRSG--ERMVEVTEDG----KEALTLFRVLRRFGDFATLVEARPVTGRTH 245
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q+RVH A G I GD KYG
Sbjct: 246 QIRVHARHA-GHSIAGDSKYG 265
>gi|226943601|ref|YP_002798674.1| Pseudouridine synthase, RluC [Azotobacter vinelandii DJ]
gi|226718528|gb|ACO77699.1| Pseudouridine synthase, RluC [Azotobacter vinelandii DJ]
Length = 278
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 127/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ ++ V + R+++R + +P ++
Sbjct: 9 GEVRVNKGRIKPEYKLQAGDL----------VRVPPLRLAERDEPVPLAQ-----GLLER 53
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + + D +++VLNKP + + G + H ++AL E LVHRLDR++
Sbjct: 54 LEAAIVHEDKSLIVLNKPAGIAVHGGSGLSHGVIEALRQLRPEARDLE---LVHRLDRDT 110
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGI 317
SGLL+ + K +S+ + ++A + + +RY ALV G+ +
Sbjct: 111 SGLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYLALVRGAWPSARKQ 153
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ G +EA+T +RVL + + +E +P+T R HQ
Sbjct: 154 VSAPLQKNTLRSG--ERMVEVDEEG----REALTLFRVLRRFGDFATLVEAKPVTGRTHQ 207
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G PI GD KYG
Sbjct: 208 IRVHARHA-GHPIAGDAKYG 226
>gi|114641168|ref|XP_508851.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Pan troglodytes]
gi|410227542|gb|JAA10990.1| RNA pseudouridylate synthase domain containing 4 [Pan troglodytes]
gi|410249832|gb|JAA12883.1| RNA pseudouridylate synthase domain containing 4 [Pan troglodytes]
gi|410290532|gb|JAA23866.1| RNA pseudouridylate synthase domain containing 4 [Pan troglodytes]
Length = 377
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 65/296 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFRT---------------RQVVKKYWAITVHVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +DDGK ++ ++N+ Q A+T+Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA-----QVAVTQYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
KL GL+ K + LHLH R+L + P L S G + L V +P
Sbjct: 306 KKL----GLEQSKARYIP----LHLHARQL----ILPALGS---GKEELNLVCKLP 346
>gi|422653202|ref|ZP_16715973.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|330966256|gb|EGH66516.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 318
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQAL-----LQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G+ Q +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATAQKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ+
Sbjct: 194 RAPLLKSNLRSG--ERMVEVNEEG----KEALTLFKVLRRFGDFATMVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHTLHA-GHAIAGDTKYG 265
>gi|221316663|ref|NP_116184.2| RNA pseudouridylate synthase domain-containing protein 4 isoform a
[Homo sapiens]
gi|74731354|sp|Q96CM3.1|RUSD4_HUMAN RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|15559540|gb|AAH14131.1| RNA pseudouridylate synthase domain containing 4 [Homo sapiens]
Length = 377
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 65/296 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFRT---------------RQVVKKYWAITVHVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +DDGK ++ ++N+ Q A+T+Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA-----QVAVTQYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
KL GL+ K + LHLH R+L + P L S G + L V +P
Sbjct: 306 KKL----GLEQSKARYIP----LHLHARQL----ILPALGS---GKEELNLVCKLP 346
>gi|397498348|ref|XP_003819946.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Pan paniscus]
Length = 377
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 65/296 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFRT---------------RQVVKKYWAITVHVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +DDGK ++ ++N+ Q A+T+Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA-----QVAVTQYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
KL GL+ K + LHLH R+L + P L S G + L V +P
Sbjct: 306 KKL----GLEQSKARYIP----LHLHARQL----ILPALGS---GKEELNLVCKLP 346
>gi|289649339|ref|ZP_06480682.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. aesculi str. 2250]
Length = 318
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQA-----LLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G+ Q +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATAQKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ+
Sbjct: 194 RAPLMKSNLRSG--ERMVEVNEEG----KEALTIFKVLRRFGDFATMVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHTLHA-GHAIAGDTKYG 265
>gi|341583575|ref|YP_004764066.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
heilongjiangensis 054]
gi|340807801|gb|AEK74389.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
heilongjiangensis 054]
Length = 303
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+++SGLLL
Sbjct: 93 YADDNLIAINKPAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRLDKKTSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IATNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y+VL + N IE P+T R HQLR+H
Sbjct: 194 ---SKGSTPKITDIDSENGKL-----AITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AKLLGCPILGDDKYG 259
>gi|427401017|ref|ZP_18892255.1| RluA family pseudouridine synthase [Massilia timonae CCUG 45783]
gi|425719913|gb|EKU82840.1| RluA family pseudouridine synthase [Massilia timonae CCUG 45783]
Length = 327
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 123/258 (47%), Gaps = 49/258 (18%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEG--------RISKRY--DTIPSGTLNPNADEIDYLRR 203
R +++ EV RI + EG RI+++ DT+P GT P
Sbjct: 50 RILRSGEVRVNKGRIDQLYRLAEGDMVRIPPIRIAEKASNDTVP-GTEFP---------- 98
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
V + D+ +LV+NKP V + G V + ++ L AA + E LVHRLDRE+SGL
Sbjct: 99 -VVFEDAHLLVINKPAGVAVHGGSGVSYGVIEQLRAARPQAKFLE---LVHRLDRETSGL 154
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
LL+G+ + +++ L D K RY+A V G+ + K+ + PL
Sbjct: 155 LLIGKKRSALTHLHDQMRDGTTDK---------------RYFAAVKGNWQNKRQHVKLPL 199
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
K DG E+ ++ Q G QEA T + +L + + +E T R HQ+RVH
Sbjct: 200 HKYTTADG--EKRVVVQAGG----QEAHTIFNLLKKW-HDFALLEAELKTGRTHQIRVHL 252
Query: 383 AEALGTPIVGDYKYGWFV 400
A + G PI+GD KYG F
Sbjct: 253 ASS-GFPILGDEKYGDFA 269
>gi|14042050|dbj|BAB55086.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 65/296 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFRT---------------RQVVKKYWAITVHVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +DDGK ++ ++N+ Q A+T+Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA-----QVAVTQYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
KL GL+ K + LHLH R+L + P L S G + L V +P
Sbjct: 306 KKL----GLEQSKARYIP----LHLHARQL----ILPALGS---GKEELNLVCKLP 346
>gi|392376177|ref|YP_003208010.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Methylomirabilis oxyfera]
gi|258593870|emb|CBE70211.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Methylomirabilis oxyfera]
Length = 314
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 112/234 (47%), Gaps = 47/234 (20%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSY--- 243
TL P +D L Y D+ +LVLNKP + P GH H+ L A L +
Sbjct: 74 TLTPEPIPLDIL-----YEDTDMLVLNKPAGLVVHPAPGH---HSG--TLVHAILYHCPD 123
Query: 244 ----DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAM 299
P +VHRLD+E+SG++++ +T +++ L F K + + K
Sbjct: 124 LPGIGEERRPGIVHRLDKETSGVMVVAKTDTAMASLATQF----KGRRVQKT-------- 171
Query: 300 YQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
Y ALV G K+ QG I A D G+ ER +EA+T YRV+
Sbjct: 172 ---YIALVHGEVKQPQGQIAA-------DIGRHERDRKRMAVRTRKGREAVTNYRVI-KR 220
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIE 413
+ G + +EL+P T R HQ+RVH + A+G P+VGD YG RR K+ + +E
Sbjct: 221 LGGLTLLELQPQTGRTHQIRVHLS-AIGHPVVGDKVYGG---RREKKCRVLSVE 270
>gi|170660217|ref|YP_001740053.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213969773|ref|ZP_03397908.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. tomato T1]
gi|301382849|ref|ZP_07231267.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. tomato Max13]
gi|302062845|ref|ZP_07254386.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. tomato K40]
gi|302131353|ref|ZP_07257343.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|422299570|ref|ZP_16387132.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
avellanae BPIC 631]
gi|422590956|ref|ZP_16665606.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|422660561|ref|ZP_16722971.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|118201620|gb|ABK79683.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213925581|gb|EEB59141.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. tomato T1]
gi|330878259|gb|EGH12408.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|331019164|gb|EGH99220.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|407988489|gb|EKG31015.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
avellanae BPIC 631]
Length = 318
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQAL-----LQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G+ Q +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATAQKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ+
Sbjct: 194 RAPLLKSNLRSG--ERMVEVNEEG----KEALTLFKVLRRFGDFATMVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHTLHA-GHAIAGDTKYG 265
>gi|422649106|ref|ZP_16712218.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|330962632|gb|EGH62892.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 318
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQA-----LLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G+ Q +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATAQKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ+
Sbjct: 194 RAPLLKSNLRSG--ERMVEVNEEG----KEALTLFKVLRRFGDFATMVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHTLHA-GHAIAGDTKYG 265
>gi|426371007|ref|XP_004052447.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 1 [Gorilla gorilla gorilla]
Length = 377
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 136/295 (46%), Gaps = 63/295 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSM-DAL-AAAALSYDYNEGP-KLVHRLDR 257
L R + ++D ++V+NKP +P+ G V + D L A + + + P L HRLD+
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKADPLHLCHRLDK 154
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ K+ + LF + ++YWA+ + P G+
Sbjct: 155 ETTGVMVLAWDKDMAHQVQELFR---------------TRQVVKKYWAITVHVPMPSAGV 199
Query: 318 IHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
+ P+ + +DDGK ++ +N+ Q A+T+Y+VL +
Sbjct: 200 VDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRNRNA-----QVAVTQYQVLSSTL 254
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPY 420
+ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 255 SS-ALVELQPITGIKHQLRVHLSFGLACPILGDHKYS-----DWNRLAPQKL--SVGTLK 306
Query: 421 KLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
KL GL+ K + LHLH R+L + P L S G + L V +P
Sbjct: 307 KL----GLEQSKARYIP----LHLHARQL----ILPALGS---GKEELNLVCKLP 346
>gi|350273318|ref|YP_004884631.1| ribosomal large subunit pseudouridine synthase [Rickettsia japonica
YH]
gi|348592531|dbj|BAK96492.1| ribosomal large subunit pseudouridine synthase [Rickettsia japonica
YH]
Length = 303
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+++SGLLL
Sbjct: 93 YADDNLIAINKPAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRLDKKTSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IATNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y+VL + N IE P+T R HQLR+H
Sbjct: 194 ---SKGSTPKITDIDSENGKL-----AITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AKLLGCPILGDDKYG 259
>gi|423330428|ref|ZP_17308212.1| RluA family pseudouridine synthase [Parabacteroides distasonis
CL03T12C09]
gi|409232044|gb|EKN24892.1| RluA family pseudouridine synthase [Parabacteroides distasonis
CL03T12C09]
Length = 545
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 100/206 (48%), Gaps = 35/206 (16%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHL-PVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ Y D +LV+NKP VP KG + V+ + L Y GP +VHRLD +S
Sbjct: 341 ILYEDDYLLVINKPEGMLSVPGKGDVDSVYQRLSIL------YPEATGPIIVHRLDMATS 394
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL +TKE+ L F K++++ K RY AL+ G + +G I
Sbjct: 395 GLLLAAKTKEAHQNLQAQF----KNRTIQK-----------RYIALLEGEVPQDEGEIRL 439
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD R I+++ G + A+T YRVL +G + I P T R HQLRV
Sbjct: 440 PLCPDPLD---RPRQIVSEEFG----KPALTRYRVL-ERTSGKTLITFYPQTGRTHQLRV 491
Query: 381 HCAEALG--TPIVGDYKYGWFVHRRW 404
H A LG PI+GD YG R +
Sbjct: 492 HAAHPLGLHCPILGDELYGRKAERLY 517
>gi|114326764|ref|YP_743921.1| ribosomal large subunit pseudouridine synthase A [Granulibacter
bethesdensis CGDNIH1]
gi|114314938|gb|ABI60998.1| ribosomal large subunit pseudouridine synthase A [Granulibacter
bethesdensis CGDNIH1]
Length = 224
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 91/195 (46%), Gaps = 25/195 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D +VLNKP +P H L EGP L HRLD ++SG L+
Sbjct: 13 ILYQDQHFVVLNKPAGLP--AHAGPAGGPSVEDWFPLLSRRKEGPWLAHRLDTDTSGCLI 70
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ K + +F+ K RYWA+V G+P +G I LS+
Sbjct: 71 IALRKTPLLEAQAMFAKGQAGK---------------RYWAVVRGAPPAAEGRIDRKLSR 115
Query: 325 --VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
+ G+ ++ G Q A T +R++ +G SW+EL PLT R HQLRVHC
Sbjct: 116 RSESGEAGRGHWRMVEDAQG----QSASTSWRIM-EHQDGLSWLELSPLTGRTHQLRVHC 170
Query: 383 AEALGTPIVGDYKYG 397
A LG PI+GD YG
Sbjct: 171 A-LLGCPILGDPVYG 184
>gi|91793653|ref|YP_563304.1| pseudouridine synthase, RluD [Shewanella denitrificans OS217]
gi|91715655|gb|ABE55581.1| ribosomal large subunit pseudouridine synthase C [Shewanella
denitrificans OS217]
Length = 318
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 125/266 (46%), Gaps = 58/266 (21%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP K++ +V+ PV M E K Y T PS L+ +
Sbjct: 46 GEVRVNKKRIKPEYKLQIGDVVR-----IPPVRMAE----KDYRTAPSANLS----RVSV 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + + D ++VLNKP + + G + + + EG +
Sbjct: 93 LETRIIHEDKHLIVLNKPAGIAVHG------------GSGIDFGVIEGLRSLRPQQKFLE 140
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLD+++SG+LL+ + + ++ L D ++K++ K Y ALV G
Sbjct: 141 LVHRLDKDTSGVLLVAKKRSALKHL----HDQLRNKTMQKD-----------YLALVRGE 185
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ K I APL K+ L G ERI+ G +AS+ T +R++ +GC+ ++ P
Sbjct: 186 WQAKDKSIKAPLLKITLASG--ERIVRVNAEG-KASE---TRFRIM-QRYDGCTLVKASP 238
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKY 396
+T R HQ+RVHC A G I D KY
Sbjct: 239 VTGRTHQIRVHCQFA-GHAIACDDKY 263
>gi|406969316|gb|EKD93992.1| Pseudouridine synthase [uncultured bacterium]
Length = 318
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 36/254 (14%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+KIKT E+ G ++ SM E + + + ++ P D L+ V + D
Sbjct: 40 KKIKTGEIKVNGRKVSSHYSMKENDVVEYGEVSLLNSMKP--DSKSTLKLKVLFEDQNYA 97
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE--------GPKLVHRLDRESSGLLLM 265
V++KP + + VH+ + L A S+ ++ P +VHRLD+ +SG++++
Sbjct: 98 VIDKPAGLVVHPGAGVHS--ETLTEALKSHFKDQLSHMGGVNRPGIVHRLDKGTSGIMVI 155
Query: 266 GRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV 325
+ E+ ++L+K + + + + Y ALV+G KQG I APL++
Sbjct: 156 AKNDET-------------HRNLAKQFE--SKTIIKLYTALVVGHLTPKQGSIEAPLTR- 199
Query: 326 LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC--SWIELRPLTCRKHQLRVHCA 383
++ ++I ++ + S+ A+T Y VL M C S +++R T R HQ+RVHC
Sbjct: 200 --NEKHRQKITISTHP---KSRYALTHYEVLRWMDVPCKSSLLKVRIETGRTHQIRVHC- 253
Query: 384 EALGTPIVGDYKYG 397
EA+G PIVGD YG
Sbjct: 254 EAIGYPIVGDPVYG 267
>gi|393781093|ref|ZP_10369294.1| RluA family pseudouridine synthase [Bacteroides salyersiae
CL02T12C01]
gi|392677428|gb|EIY70845.1| RluA family pseudouridine synthase [Bacteroides salyersiae
CL02T12C01]
Length = 539
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 108/226 (47%), Gaps = 34/226 (15%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
V + D +LV++KP VP KG ++ + Y GP +VHRLD +SG
Sbjct: 338 VLFEDDWLLVIDKPAGMLSVPGKG-----SAGSVYSIVKELYPDATGPIIVHRLDMATSG 392
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
LLL+ ++KE L F K++++ K RY AL+ G+P + +G I P
Sbjct: 393 LLLIAKSKEVHQHLQAQF----KNRTVKK-----------RYIALLDGTPAQDEGEIKLP 437
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L LD R ++ + SG + A+T Y+VL N + I PLT R HQLRVH
Sbjct: 438 LCPDPLD---RPRQVVHEESG----KLAITRYKVLEKKGNR-TRIAFYPLTGRTHQLRVH 489
Query: 382 CAEALG--TPIVGDYKYGWFVHRRWKQMPRVD-IEPTSGKPYKLRR 424
A LG PI GD YG R + ++ I P SG+ K R
Sbjct: 490 AAHPLGLNCPIAGDELYGRRAERLYLHAEYLEFIHPVSGQVMKFER 535
>gi|114797784|ref|YP_761328.1| pseudouridine synthase family protein [Hyphomonas neptunium ATCC
15444]
gi|114737958|gb|ABI76083.1| pseudouridine synthase family protein [Hyphomonas neptunium ATCC
15444]
Length = 244
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 116/217 (53%), Gaps = 26/217 (11%)
Query: 182 RYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL 241
R IP+ L+P A + R L+ + D+AIL NKPP + +G V S+D L A
Sbjct: 3 RNRDIPA--LSPEAAAL--ARSLLIHEDAAILGFNKPPGMASQGGSSVGQSLDDLLWA-F 57
Query: 242 SYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQ 301
+ + P+LVHRLD+ +SG++L RT+ + + L+ F+ + K+
Sbjct: 58 AKSNGKRPRLVHRLDQGTSGVMLTARTQPAAAFLSAAFAGRDAQKT-------------- 103
Query: 302 RYWALVIGS-PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
Y ALV G P + G+I A L KV ++G R+ILA+ S + +Q A T + VL
Sbjct: 104 -YLALVKGKLPPAEHGVIDASLVKV--EEGGRPRMILAKPS-RKGAQPARTGWAVLARNE 159
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ + ++L P T R HQ+RVH +LG PI+GD YG
Sbjct: 160 D-HALMQLTPETGRMHQIRVHLM-SLGCPILGDGLYG 194
>gi|423268979|ref|ZP_17247951.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T00C42]
gi|423273460|ref|ZP_17252407.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T12C13]
gi|392702288|gb|EIY95434.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T00C42]
gi|392707753|gb|EIZ00868.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL05T12C13]
Length = 539
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 163 EPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVP 222
EP R L VE S+RY +L+ N EI + D +LVL+KP V
Sbjct: 309 EPILRHMLQGLNVEPAPSERY------SLSQNMPEI-------LFEDQWLLVLHKPEGVL 355
Query: 223 LKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDV 282
S+ +L A Y GP +VHRLD +SGLLL +T+E L F +
Sbjct: 356 SVPGKSEEQSIYSLLRA--RYPEATGPLVVHRLDMATSGLLLAAKTQEVHRHLQAQFEN- 412
Query: 283 NKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG 342
+S+ K RY AL+ G E++G+I P+ LD + Q
Sbjct: 413 ---RSIKK-----------RYIALLDGILPEEEGVIDLPICPDYLDRPR-------QMVN 451
Query: 343 LEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALG--TPIVGDYKYGWFV 400
E + A+T YRV+ NG + I PLT R HQLRVH A LG PIVGD YG
Sbjct: 452 EELGKTAITRYRVMDRK-NGQTRIAFFPLTGRTHQLRVHAAHPLGLNCPIVGDELYGRKA 510
Query: 401 HRRWKQMPRVD-IEPTSGK 418
R + ++ I P SG+
Sbjct: 511 ERLYLHAEYLEFIHPVSGQ 529
>gi|265762620|ref|ZP_06091188.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
2_1_16]
gi|336408646|ref|ZP_08589137.1| hypothetical protein HMPREF1018_01152 [Bacteroides sp. 2_1_56FAA]
gi|383117361|ref|ZP_09938107.1| RluA family pseudouridine synthase [Bacteroides sp. 3_2_5]
gi|423249084|ref|ZP_17230100.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T00C08]
gi|423256606|ref|ZP_17237534.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T12C07]
gi|251947311|gb|EES87593.1| RluA family pseudouridine synthase [Bacteroides sp. 3_2_5]
gi|263255228|gb|EEZ26574.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
2_1_16]
gi|335935867|gb|EGM97815.1| hypothetical protein HMPREF1018_01152 [Bacteroides sp. 2_1_56FAA]
gi|392648605|gb|EIY42293.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T12C07]
gi|392656631|gb|EIY50269.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL03T00C08]
Length = 539
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 163 EPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVP 222
EP R L VE S+RY +L+ N EI + D +LVL+KP V
Sbjct: 309 EPILRHMLQGLNVEPAPSERY------SLSQNMPEI-------LFEDQWLLVLHKPEGVL 355
Query: 223 LKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDV 282
S+ +L A Y GP +VHRLD +SGLLL +T+E L F +
Sbjct: 356 SVPGKSEEQSIYSLLRA--RYPEATGPLVVHRLDMATSGLLLAAKTQEVHRHLQAQFEN- 412
Query: 283 NKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG 342
+S+ K RY AL+ G E++G+I P+ LD + Q
Sbjct: 413 ---RSIKK-----------RYIALLDGILPEEEGVIDLPICPDYLDRPR-------QMVN 451
Query: 343 LEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALG--TPIVGDYKYGWFV 400
E + A+T YRV+ NG + I PLT R HQLRVH A LG PIVGD YG
Sbjct: 452 EELGKTAITRYRVMDRK-NGQTRIAFFPLTGRTHQLRVHAAHPLGLNCPIVGDELYGRKA 510
Query: 401 HRRWKQMPRVD-IEPTSGK 418
R + ++ I P SG+
Sbjct: 511 ERLYLHAEYLEFIHPVSGQ 529
>gi|262383706|ref|ZP_06076842.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
2_1_33B]
gi|262294604|gb|EEY82536.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
2_1_33B]
Length = 549
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 99/205 (48%), Gaps = 33/205 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAA---AALSYDYNEGPKLVHRLDRESSG 261
+ Y D +LV+NKP +G L V DA + ++ Y GP +VHRLD +SG
Sbjct: 342 ILYEDDYLLVINKP-----EGMLSVPGKGDADSVYQRLSILYPEATGPIIVHRLDMATSG 396
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
LLL +TKE+ L F K++++ K RY AL+ G + +G I P
Sbjct: 397 LLLAAKTKEAHQNLQAQF----KNRTIQK-----------RYIALLEGEVPQDEGEIRLP 441
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L LD R I+++ G + A T YRVL +G + I P T R HQLRVH
Sbjct: 442 LCPDPLD---RPRQIVSEEFG----KPAFTRYRVL-ERTSGKTLIAFYPQTGRTHQLRVH 493
Query: 382 CAEALG--TPIVGDYKYGWFVHRRW 404
A LG PI+GD YG R +
Sbjct: 494 AAHPLGLHCPILGDELYGRKAERLY 518
>gi|433450856|ref|ZP_20412712.1| pseudouridine synthase, RluA family protein [Mycoplasma sp. G5847]
gi|431933803|gb|ELK20362.1| pseudouridine synthase, RluA family protein [Mycoplasma sp. G5847]
Length = 310
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 127/273 (46%), Gaps = 57/273 (20%)
Query: 132 LVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTL 191
L++ EC ++ D + N V++P + I + +I TL
Sbjct: 36 LIKEECVSVNDQIITNN----------NFVVKPNSEIII--------------SIKDATL 71
Query: 192 NPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG--- 248
N N + + + + Y+D +LV+NK + + H ++N+ + + A L+ D
Sbjct: 72 NENISKNEDIDLDIIYQDDDLLVINKQNNITV--HPSLNNTNNTIVNALLASDVELSSIN 129
Query: 249 ----PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYW 304
P +VHR+D++++GLL++ + ++ LL+ +F + +Y+ Y
Sbjct: 130 GELRPGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKN---------------HQIYKEYL 174
Query: 305 ALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCS 364
A+V G K +G+I AP+ + +D K + A+N S++A+T + V+ + +
Sbjct: 175 AIVSGVIKPNKGLIDAPIGRSAIDRKKMS--VTAKN-----SKQAITSFEVVERFLQN-T 226
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
++ + T R HQ+RVH + P++ D YG
Sbjct: 227 LVKCQIQTGRTHQIRVHF-NYINHPVLNDPIYG 258
>gi|407683489|ref|YP_006798663.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii str. 'English Channel 673']
gi|407245100|gb|AFT74286.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii str. 'English Channel 673']
Length = 313
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 123/267 (46%), Gaps = 60/267 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ ++++ PV + EG + PS P +I
Sbjct: 46 GEVRVNKGRVKPEYKLQADDLIR-----IPPVRVSEGAPA------PS----PKLKKIAS 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + + D ILV+NKP + + G + LS+ EG +
Sbjct: 91 LESHILFEDDRILVINKPSGMAVHG------------GSGLSFGLIEGLRALRPDAKFME 138
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG +L+ + + S L + + K M +RY ALV G
Sbjct: 139 LVHRLDRDTSGCILIAKKR---SALRHMHEQLRTGK------------MDKRYNALVAGE 183
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ + + APL K +L G ER++ + G + + T YR+L G + +E P
Sbjct: 184 WPKTRFKVKAPLRKNVLQSG--ERMVSVSDDG----KPSETRYRILEEYA-GATLVEASP 236
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVHC A G PI D KYG
Sbjct: 237 ITGRTHQIRVHCLHA-GHPIACDPKYG 262
>gi|166030562|ref|ZP_02233391.1| hypothetical protein DORFOR_00225 [Dorea formicigenerans ATCC
27755]
gi|166029564|gb|EDR48321.1| pseudouridine synthase, RluA family [Dorea formicigenerans ATCC
27755]
Length = 296
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 30/196 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLV----HRLDRESS 260
+ Y D +LVLNKP +P+ H ++N +++A A Y ++G + +RLDR++S
Sbjct: 83 IIYEDEDLLVLNKPAGMPI--HPSLNNYTNSIANALAYYFQSQGKPFIFRCCNRLDRDTS 140
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL ++ + S S+L SD+ K + + ++ Y A+ GS +G I A
Sbjct: 141 GLTIVSKHLVSGSIL----SDMTKYREV-----------HREYLAIARGSVTPSEGTIQA 185
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL G+ I+ + E ++A+T Y+V+ NG S + LR T R HQ+R+
Sbjct: 186 PL-------GRKGGTIIERTVDWEHGEDAVTHYKVVKEA-NGHSLVSLRLETGRTHQIRI 237
Query: 381 HCAEALGTPIVGDYKY 396
H + LG P++GDY Y
Sbjct: 238 HM-KYLGYPLIGDYLY 252
>gi|424662232|ref|ZP_18099269.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 616]
gi|404578021|gb|EKA82757.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 616]
Length = 539
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 104/220 (47%), Gaps = 34/220 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL---SYDYNEGPKLVHRLDRESSG 261
+ + D +LV++KP +G L V + L+A +L Y GP +VHRLD +SG
Sbjct: 338 ILFEDEWLLVIHKP-----EGLLSVPGKSEELSAYSLLRARYPEATGPMIVHRLDMATSG 392
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
LLL+ +TKE L F + ++ ++Y AL+ G +G I P
Sbjct: 393 LLLVAKTKEVHQHLQAQFEN---------------HSIKKQYTALLEGILPTDEGTIDLP 437
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
+ LLD + Q + E+ ++A+T YRV+ NG + I P T R HQLRVH
Sbjct: 438 ICPDLLDRPR-------QKADRESGKKAVTRYRVID-RKNGRTRIAFFPQTGRTHQLRVH 489
Query: 382 CAE--ALGTPIVGDYKYGWFVHRRWKQMPRVDI-EPTSGK 418
A L PI GD YG R + R++ P SG+
Sbjct: 490 SAHPSGLNCPIAGDELYGKKAERLYLHAERLEFTHPVSGQ 529
>gi|332306496|ref|YP_004434347.1| RluA family pseudouridine synthase [Glaciecola sp. 4H-3-7+YE-5]
gi|332173825|gb|AEE23079.1| pseudouridine synthase, RluA family [Glaciecola sp. 4H-3-7+YE-5]
Length = 318
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 27/212 (12%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDY 245
P+ + D++ L + + D ++VLNKP + + G + ++AL A +
Sbjct: 78 PNAAPSTKLDKVASLESHILFEDDLLIVLNKPSGMAVHGGSGLSFGVIEALRALRPQARF 137
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
E LVHRLDR++SG L++ + + ++ K+L + D + M +RY A
Sbjct: 138 LE---LVHRLDRDTSGCLVIAKKRSAL-------------KNLHEQLRD--KKMDKRYHA 179
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
LV+G E + ++APL K +L G ER++ + G + + T +RVL + G +
Sbjct: 180 LVVGEWPENRYKVNAPLLKNILKSG--ERLVSVDSEG----KPSETRFRVLERYV-GATL 232
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+E P+T R HQ+RVHC A+ PI D KYG
Sbjct: 233 VEASPITGRTHQIRVHCLHAV-HPIACDDKYG 263
>gi|221135371|ref|ZP_03561674.1| ribosomal large subunit pseudouridine synthase C (pseudouridylate
synthase) (uracil hydrolyase [Glaciecola sp. HTCC2999]
Length = 316
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 45/216 (20%)
Query: 191 LNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
+N D++ ++ + Y D I+V+NKP + + G + LS+ EG +
Sbjct: 82 VNVKLDKVAVMQDYIIYEDDRIMVINKPSGLAVHG------------GSGLSFGLIEGLR 129
Query: 251 ----------LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMY 300
LVHR+DR++SG+LL+ + + ++ L D + M
Sbjct: 130 ALRPDAKFMELVHRIDRDTSGILLVAKRRSALRHLHEQLRD---------------KKMQ 174
Query: 301 QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
+RY ALV G E + + APL K +L G ERI+ G + + T YRVL
Sbjct: 175 KRYHALVWGQWPENRFKVKAPLLKNVLKSG--ERIVNVNPEG----KPSETRYRVLQAFA 228
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ +E P+T R HQ+RVHC A G PI GD KY
Sbjct: 229 Q-TTLVEASPITGRTHQIRVHCLHA-GFPIGGDPKY 262
>gi|323343472|ref|ZP_08083699.1| ribosomal large subunit pseudouridine synthase A [Prevotella oralis
ATCC 33269]
gi|323095291|gb|EFZ37865.1| ribosomal large subunit pseudouridine synthase A [Prevotella oralis
ATCC 33269]
Length = 573
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 104/228 (45%), Gaps = 38/228 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL---SYDYNEGPKLVHRLDRESSG 261
+ Y D AI+V+NKP G L V AL+ L Y + P +VHRLD +SG
Sbjct: 368 IVYEDEAIVVINKP-----AGMLSVPGKACALSVYDLMRMRYPDSNSPLIVHRLDMATSG 422
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE----KQGI 317
LL++ +TK + +L F++ + ++Y A++ G P GI
Sbjct: 423 LLIIAKTKNAHRILQRQFAE---------------HTIRKQYIAVLDGVPDSCRWPSAGI 467
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I PL L D + Q E +EA+TEY++L + I L P T R HQ
Sbjct: 468 ISLPLRPDLADRPR-------QLVDFEHGKEAVTEYKILR-TAGEETRIALFPHTGRTHQ 519
Query: 378 LRVHCAE--ALGTPIVGDYKYGWFVHRRWKQMPRVD-IEPTSGKPYKL 422
LR+HCA L PI GD YG R + ++ I P SG+ KL
Sbjct: 520 LRIHCAHPYGLNCPIKGDNLYGTRSQRLYLHAESMEFIHPVSGRCIKL 567
>gi|405951014|gb|EKC18963.1| RNA pseudouridylate synthase domain-containing protein 4
[Crassostrea gigas]
Length = 354
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 26/212 (12%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMG 266
Y IL +NK +P +G V ++ L + + +VHRLD+E++G++L G
Sbjct: 94 YNKDDILAINKIYGIPSQGGEGVRLNIADLLPKLAERIHCDKLHMVHRLDKETTGIMLFG 153
Query: 267 RTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
+T+E S L F D K+ Y + G P K+GII+ P+++
Sbjct: 154 KTEEMASKLRKAFKDRKVKKT---------------YLVIAKGIPSLKEGIINVPIAEGE 198
Query: 327 LDDGKTERI--ILAQNSGLE--------ASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+ K +R+ I NS + + A+T Y+V+ + C+ +E+ P T KH
Sbjct: 199 VGKDKRKRMTCIPVYNSDTKHVMHKTKKKTVPAVTHYKVVANS-HSCALLEVSPETGVKH 257
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMP 408
Q+R H L TP++GD+KY + + + +P
Sbjct: 258 QIRTHLLHVLNTPVLGDHKYSYLTEIKPQILP 289
>gi|406596529|ref|YP_006747659.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii ATCC 27126]
gi|406373850|gb|AFS37105.1| ribosomal large subunit pseudouridine synthase C [Alteromonas
macleodii ATCC 27126]
Length = 313
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 123/267 (46%), Gaps = 60/267 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ ++++ PV + EG + PS P D+I
Sbjct: 46 GEVRVNKGRVKPEYKLQADDLIR-----IPPVRVSEGAPA------PS----PKLDKIAS 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + + D ILV+NKP + + G + LS+ EG +
Sbjct: 91 LESHILFEDDRILVINKPSGMAVHG------------GSGLSFGLIEGLRALRPDAKFME 138
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG +L+ + + S L + + K M +RY ALV G
Sbjct: 139 LVHRLDRDTSGCILIAKKR---SALRHMHEQLRTGK------------MDKRYNALVAGE 183
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ + + A L K +L G ER++ + G + + T YR+L G + +E P
Sbjct: 184 WPKTRFKVKAALRKNVLQSG--ERMVSVSDDG----KPSETRYRILEEYA-GATLVEASP 236
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVHC A G PI D KYG
Sbjct: 237 ITGRTHQIRVHCLHA-GHPIACDPKYG 262
>gi|440748268|ref|ZP_20927522.1| RNA pseudouridylate synthase, group 1 [Mariniradius saccharolyticus
AK6]
gi|436483472|gb|ELP39526.1| RNA pseudouridylate synthase, group 1 [Mariniradius saccharolyticus
AK6]
Length = 244
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 26/198 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
V Y D+ +LV+NK + ++G ++ ++ YN+ ++ VHRLDR S
Sbjct: 8 VVYEDNHLLVVNKAAGILVQGDQTGDKTLTEYCKDYIARKYNKPGEVFLHPVHRLDRPVS 67
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL++ RT + + + LF + +++ YWA+V PKE+ G +
Sbjct: 68 GLVVFARTSKGLERMMELFRKRD---------------IHKVYWAIVKKRPKEEVGKLTH 112
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+K +++ ++ A + SQ+A Y+ LG + N +E+RP++ R HQ+RV
Sbjct: 113 WLTK-----DESKNVVTAHEREVPGSQKAELNYKALGKL-NDHWLLEVRPISGRPHQIRV 166
Query: 381 HCAEALGTPIVGDYKYGW 398
A ++G PI GD KYG+
Sbjct: 167 QLA-SMGCPIRGDVKYGF 183
>gi|397664730|ref|YP_006506268.1| 23S rRNA pseudouridylate synthase [Legionella pneumophila subsp.
pneumophila]
gi|395128141|emb|CCD06346.1| 23S rRNA pseudouridylate synthase [Legionella pneumophila subsp.
pneumophila]
Length = 315
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 28/199 (14%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + + DS++LV+NKP + + G + ++AL Y E LVHRLDRE+
Sbjct: 85 LKDSIIFEDSSLLVINKPAGIAVHGGSGLSLGVIEALRKTRHDLSYLE---LVHRLDRET 141
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI-I 318
SG LL+ + + ++ + L + + YWAL+ K+ I I
Sbjct: 142 SGCLLLAKKRSTLRAIQALLE---------------AREVQKIYWALLTHRWDGKKKITI 186
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ Q G +AS+ T++++L C W+E P T R HQ+
Sbjct: 187 TAPLEKNTLKSG--ERVVSVQKDG-KASE---TDFKLLENYHQAC-WVEASPKTGRTHQI 239
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G IVGD KYG
Sbjct: 240 RVHSA-YFGHVIVGDEKYG 257
>gi|237800339|ref|ZP_04588800.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331023196|gb|EGI03253.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 318
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 125/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G+ KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRTKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQA-----LLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAA-AALSYDYNEGPKLVHRLDRES 259
L + Y D A++VLNKP + + G + S + A L D E +LVHRLDR++
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGL--SFGVIEAFRQLRPDAKE-LELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGI 317
SGLL+ + K +S+ + ++A + + +RY ALV G+ Q
Sbjct: 150 SGLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWAAAQKQ 192
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ
Sbjct: 193 VRAPLLKSNLRSG--ERMVEVNEEG----KEALTIFKVLRRFGDFATMVEAKPVTGRTHQ 246
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 247 IRVHTLHA-GHAIAGDTKYG 265
>gi|427411601|ref|ZP_18901803.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
gi|425709891|gb|EKU72914.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
Length = 226
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 36/219 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D ++L+KP +P+ G + + N + A+L++ + P VHRLDR++S
Sbjct: 8 VLFIDGEAIILDKPAGLPVDAPRDGSISLENHL-----ASLTFGFQRWPLAVHRLDRDTS 62
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ K + A+ + +RY A++ G P+ +G I
Sbjct: 63 GCLLLARNPKA-------------HKRFAAAFEAGT--VEKRYVAVLEGVPEADEGTIEL 107
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L KV + R+I A+ A + A+T +R L + +G + I P T R HQ+RV
Sbjct: 108 SLKKVS-TQAQGWRMIAAK-----AGKPAVTHWRKLA-VKDGRALIAFTPETGRTHQIRV 160
Query: 381 HCAEALGTPIVGDYKYG-----WFVHRRWKQMPRVDIEP 414
H LG IVGD YG +H R+ +PR D +P
Sbjct: 161 HAQHGLGFGIVGDPVYGDGQGAMLLHSRFLSVPRGDNKP 199
>gi|307611132|emb|CBX00776.1| ribosomal large subunit pseudouridine synthase [Legionella
pneumophila 130b]
Length = 315
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 28/199 (14%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + + DS++LV+NKP + + G + ++AL Y E LVHRLDRE+
Sbjct: 85 LKDSIIFEDSSLLVINKPAGIAVHGGSGLSLGVIEALRKTRHDLSYLE---LVHRLDRET 141
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI-I 318
SG LL+ + + ++ + L + + YWAL+ K+ I I
Sbjct: 142 SGCLLLAKKRSTLRAIQALLE---------------AREVQKIYWALLTHRWDGKKKITI 186
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ Q G +AS+ T++++L C W+E P T R HQ+
Sbjct: 187 TAPLEKNTLKSG--ERVVSVQKDG-KASE---TDFKLLENYHQAC-WVEASPKTGRTHQI 239
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G IVGD KYG
Sbjct: 240 RVHSA-YFGHVIVGDEKYG 257
>gi|58039270|ref|YP_191234.1| ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans 621H]
gi|58001684|gb|AAW60578.1| Ribosomal large subunit pseudouridine synthase A [Gluconobacter
oxydans 621H]
Length = 265
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 24/150 (16%)
Query: 248 GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
GP L HRLD ++SG LL+ R K ++ + K+ + ++ YWA+V
Sbjct: 87 GPWLAHRLDADTSGCLLVARRKTAL---------IEAQKAFQE------RQAHKLYWAVV 131
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE 367
+G + G I APL + D R+++ EA T +RVLG G W+E
Sbjct: 132 VGDLPQDSGEIDAPLLRQ--SDASGWRMVVDAKG-----DEARTRWRVLG-RSKGLCWVE 183
Query: 368 LRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
L LT R HQ R+HCAE LGTPI+GD YG
Sbjct: 184 LELLTGRTHQARIHCAE-LGTPILGDPVYG 212
>gi|375357457|ref|YP_005110229.1| putative ribosomal large subunit pseudouridine synthase
[Bacteroides fragilis 638R]
gi|423258566|ref|ZP_17239489.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T00C01]
gi|423264462|ref|ZP_17243465.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T12C05]
gi|423281687|ref|ZP_17260572.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 615]
gi|301162138|emb|CBW21683.1| putative ribosomal large subunit pseudouridine synthase
[Bacteroides fragilis 638R]
gi|387776146|gb|EIK38246.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T00C01]
gi|392706728|gb|EIY99851.1| RluA family pseudouridine synthase [Bacteroides fragilis
CL07T12C05]
gi|404582728|gb|EKA87419.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 615]
Length = 539
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 117/259 (45%), Gaps = 41/259 (15%)
Query: 163 EPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVP 222
EP R L VE S+RY +L+ N EI + D +LVL+KP V
Sbjct: 309 EPILRHMLQGLDVEPAPSERY------SLSQNMPEI-------LFEDQWLLVLHKPEGVL 355
Query: 223 LKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDV 282
S+ +L A Y GP +VHRLD +SGLLL +T+E L F +
Sbjct: 356 SVPGKSEEQSIYSLLRA--RYPEATGPLVVHRLDMATSGLLLAAKTQEVHRHLQAQFEN- 412
Query: 283 NKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG 342
+S+ K RY AL+ G E++G+I P+ LD + Q
Sbjct: 413 ---RSIKK-----------RYIALLDGILPEEEGVIDLPICPDYLDRPR-------QMVN 451
Query: 343 LEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALG--TPIVGDYKYGWFV 400
E + A+T YRV+ NG + I PLT R HQLRVH A LG PIVGD YG
Sbjct: 452 EELGKTAITRYRVMDRK-NGQTRIAFFPLTGRTHQLRVHAAHPLGLNCPIVGDELYGRKA 510
Query: 401 HRRWKQMPRVD-IEPTSGK 418
R + ++ I P SG+
Sbjct: 511 ERLYLHAEYLEFIHPVSGQ 529
>gi|110635475|ref|YP_675683.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
gi|110286459|gb|ABG64518.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
Length = 343
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 107/218 (49%), Gaps = 32/218 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY--DYNEG------PKLVHRLD 256
+ Y D A++V++KP + + H N L A + + D G P +VHRLD
Sbjct: 93 ILYEDEALIVIDKPAGLVV--HPGPGNWTGTLVNALIHHCGDTLSGIGGVRRPGIVHRLD 150
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG++++ +T ++ +L F+D + L +A Y ALV G P+ G
Sbjct: 151 RDTSGVMVVAKTDQAHRVLAEAFADHGQDGDLERA-----------YVALVWGVPRRISG 199
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING------CSWIELRP 370
++ APL + D +T R ++ Q G ++ A+T Y VL G + +E R
Sbjct: 200 LVDAPLGRSASD--RTLRAVVPQ--GRADARHAVTHYTVLERYGTGTPEEQIAALVECRL 255
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMP 408
T R HQ+RVH A +G P+VGD YG + ++P
Sbjct: 256 ETGRTHQIRVHMAH-IGHPLVGDPAYGRAFRTKANRLP 292
>gi|407005750|gb|EKE21798.1| hypothetical protein ACD_7C00125G0001 [uncultured bacterium]
Length = 316
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 100/212 (47%), Gaps = 37/212 (17%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL--------------SYD 244
D ++ V +++ LV+NKP + + P N + L +Y
Sbjct: 79 DKIKLDVIFKNDDFLVINKPAGIQVH---PDFNEKENTIVNGLIATYPEIAKLKDDHTYS 135
Query: 245 YNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYW 304
+ P +VHRLD+E+SG+L++ + +S +F K K+++K +Y
Sbjct: 136 FQSRPGIVHRLDKETSGILIIAKNIKSFLEFKTMF----KEKTIAK-----------KYL 180
Query: 305 ALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCS 364
A+ G P E++G I PL++ +T +A +EA+T Y V+ + S
Sbjct: 181 AISYGIPLERKGTIDKPLARTTNYRKQT----IAGKRTKTKIREALTNYEVIKDLGENFS 236
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
IE+ P T R HQ+RVH + A+G PIVGD Y
Sbjct: 237 LIEVSPQTGRTHQIRVHLS-AIGHPIVGDNLY 267
>gi|357521641|ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525131|gb|AET05585.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 687
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 57/94 (60%), Gaps = 8/94 (8%)
Query: 49 RHYSRISPPRPA----VIRVSEKKV-AHLGPPKAGPKPRQLLSLPPFPGHNLPGKHWG-- 101
+HYSR+ PP+P VIRVS L PK GPKPRQLLSLP FP H L GK+
Sbjct: 50 KHYSRVRPPKPVSVDKVIRVSNNIARLDLDVPKDGPKPRQLLSLPSFPSHPLSGKNSTSA 109
Query: 102 -RQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQ 134
VT V+ +KYYF + DSV +SHF +GL+
Sbjct: 110 REHDRVTVVNCIKYYFKDAFDSVNESHFKEGLLH 143
>gi|52842505|ref|YP_096304.1| ribosomal large subunit (23S rRNA) pseudouridine synthase C
[Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378778192|ref|YP_005186631.1| ribosomal large subunit (23S rRNA) pseudouridine synthase C
[Legionella pneumophila subsp. pneumophila ATCC 43290]
gi|52629616|gb|AAU28357.1| ribosomal large subunit (23S rRNA) pseudouridine synthase C
[Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|364509008|gb|AEW52532.1| ribosomal large subunit (23S rRNA) pseudouridine synthase C
[Legionella pneumophila subsp. pneumophila ATCC 43290]
Length = 317
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 28/199 (14%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + + DS++LV+NKP + + G + ++AL Y E LVHRLDRE+
Sbjct: 87 LKDSIIFEDSSLLVINKPAGIAVHGGSGLSLGVIEALRKTRHDLSYLE---LVHRLDRET 143
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI-I 318
SG LL+ + + ++ + L + + YWAL+ K+ I I
Sbjct: 144 SGCLLLAKKRSTLRAIQALLE---------------AREVQKIYWALLTHRWDGKKKITI 188
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ Q G +AS+ T++++L C W+E P T R HQ+
Sbjct: 189 TAPLEKNTLKSG--ERVVSVQKDG-KASE---TDFKLLENYHQAC-WVEASPKTGRTHQI 241
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G IVGD KYG
Sbjct: 242 RVHSA-YFGHVIVGDEKYG 259
>gi|315123230|ref|YP_004065236.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas sp.
SM9913]
gi|315016990|gb|ADT70327.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas sp.
SM9913]
Length = 563
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 27/200 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D +LV+NKP + + + +S+ + GP +VHRLD +SGLL+
Sbjct: 362 IVYQDDDLLVINKPAEFLSVPGINIDDSV--YMRIKTQFPAASGPLIVHRLDMSTSGLLI 419
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ K + K+L K + + + +RY ALV G+ E G+I+ PL
Sbjct: 420 IALNKRA-------------HKALQKQFIE--RTIEKRYVALVAGNITENSGVINLPL-- 462
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
+LD R ++ +G + ++T + VL N + ++L P T R HQLRVHCA
Sbjct: 463 -VLDFDDKPRQMVCYKTG----KPSLTTWHVL-ERKNNTTRLQLYPKTGRTHQLRVHCAH 516
Query: 385 ALG--TPIVGDYKYGWFVHR 402
LG TPIVGD YG R
Sbjct: 517 QLGLNTPIVGDTHYGEEAER 536
>gi|147678153|ref|YP_001212368.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
gi|146274250|dbj|BAF59999.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
Length = 312
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 35/201 (17%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE--------GPKLVHRLD 256
V Y D+ ++V+NKP + + P + AL Y ++ P +VHRLD
Sbjct: 83 VYYEDADVIVINKPRGMVVH---PADGNYSGTLVNALLYHCSDLSGINGVMRPGIVHRLD 139
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SGL+++ + N + LS A + +RY ALV G KE+ G
Sbjct: 140 KDTSGLIMVAK---------------NDTAHLSLARQLKERQITRRYLALVHGLLKEQSG 184
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
++ AP+ + D K +L +N +++A+T YRVL G ++IEL T R H
Sbjct: 185 MVDAPIGRDPRDRKKMA--VLQKN-----AKQAVTRYRVL-ERFKGYTYIELMLETGRTH 236
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q+RVH + +G P+VGD KYG
Sbjct: 237 QIRVHMS-YIGHPVVGDLKYG 256
>gi|344943140|ref|ZP_08782427.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
gi|344260427|gb|EGW20699.1| pseudouridine synthase, RluA family [Methylobacter tundripaludum
SV96]
Length = 319
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 118/236 (50%), Gaps = 36/236 (15%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L++ + + D L++NKP + G V + + + L +LVHRLD+++S
Sbjct: 94 LQQGILFEDEGFLIVNKPAGFAVHGGSGVSSGI--IEGLRLIRPEAHFLELVHRLDKDTS 151
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++ + + ++ LL LF D + +++ Y AL+ G K+ ++ A
Sbjct: 152 GCLIIAKKRSALKLLHELFRDNH---------------IHKTYLALLAGQWARKKLVVTA 196
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL K + G ER+++ SG +EA T +R + + + + +E P T R HQ+RV
Sbjct: 197 PLLKNVAKGG--ERMVVISQSG----KEAETLFRRV-KLFSDSTLVEASPKTGRTHQIRV 249
Query: 381 HCAEALGTPIVGDYKYG------WFVHRRWKQM----PRVDIE-PTSGKPYKLRRP 425
H A +LG PIVGD +YG F R +K+M ++ + P +G+P + P
Sbjct: 250 HAA-SLGHPIVGDERYGRDDINRGFKGRGYKRMFLHAEKLKFQHPVTGEPLTILAP 304
>gi|315126331|ref|YP_004068334.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas sp. SM9913]
gi|315014845|gb|ADT68183.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas sp. SM9913]
Length = 319
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP+ K++ ++V+ P+ R+S+R + +PS D++
Sbjct: 46 GEVRVNKKRIKPVYKLQLDDVIR-----IPPI-----RVSEREEFVPS-----KLDKVTR 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + + D ++V+NKP + + G + S + A + +LVHRLDR++S
Sbjct: 91 LEDYILFEDKYLMVINKPSGMAVHGGSGL--SYGLIEALRVLRPEERSLELVHRLDRDTS 148
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ + + S+LT L + + + M + YWALV G K +
Sbjct: 149 GCLLIAKRR---SVLTALHEQLRE------------KTMEKNYWALVEGQWDSKTKNVTE 193
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K L G ER++ N+ + + T ++VL N CS ++ P+T R HQ+RV
Sbjct: 194 GLRKNTLKSG--ERVVRVDNT---EGKPSHTRFKVL-ERFNDCSLVQASPVTGRTHQIRV 247
Query: 381 HCAEALGTPIVGDYKYG 397
H + G I D KYG
Sbjct: 248 H-TQCQGHAIACDDKYG 263
>gi|410919717|ref|XP_003973330.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Takifugu rubripes]
Length = 385
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 125/274 (45%), Gaps = 61/274 (22%)
Query: 153 IRKIKTNEVMEPGARIFLPVSMVEGRI--SKRYDTIPSGTLNPNADEIDYLRRLVKYRDS 210
IR T + +P P+S + R+ KR+ T ++PN +L R V Y+D+
Sbjct: 69 IRDSATKKATQP------PLSTQQKRVLDIKRFST-QLQNVHPNV-LAKHLHRSVLYQDN 120
Query: 211 AILVLNKPPKVPLKGH---------LPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
++V+NKP VP++ LPV + M + + D+N P L RL++E+SG
Sbjct: 121 DVVVINKPYGVPVRDDTGVTSISSVLPVLSKM--MTGNKIKSDFNLLPCL--RLEKEASG 176
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
LL+ + E V L D+ ++ + YW + +G P GII P
Sbjct: 177 ALLLAKRAEVVERLL----DLQRNHQVEMT-----------YWVITVGVPVPSVGIIDIP 221
Query: 322 L-----------SKVLL-------DDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
+ K+ L D G I A + A+T+Y+VL +GC
Sbjct: 222 IIEREVTGPQPHYKMALSPLFKMNDSGDGLTKIRAHRQ----AHPAVTKYKVLDSS-SGC 276
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
S +EL+P T KHQ+RVH A L PI+GD+KY
Sbjct: 277 SLVELQPCTGVKHQMRVHMAFGLTCPILGDHKYS 310
>gi|386826782|ref|ZP_10113889.1| pseudouridine synthase, RluA family [Beggiatoa alba B18LD]
gi|386427666|gb|EIJ41494.1| pseudouridine synthase, RluA family [Beggiatoa alba B18LD]
Length = 312
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 43/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP +++ +V+ LP R + + P+ ++
Sbjct: 45 GEVRVNKGRIKPDYRLQAGDVVR------LPPVQTATRTA----------VTPHQQVLET 88
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + Y D+ +LV+NKP + + G V + ++ L A ++ E LVHRLDRE+
Sbjct: 89 LQASILYEDAKLLVINKPSGLAVHGGSGVQYGVIEGLRALYPDANFLE---LVHRLDRET 145
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG L++ + + L + + M ++Y ALV G + ++
Sbjct: 146 SGCLMVAKKASVLRQLHAFLREAD---------------MNKQYIALVRGKWSARTKQVN 190
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K +L G ER++ G + +++E+RV+ + +++ P+T R HQ+R
Sbjct: 191 APLRKNVLQSG--ERVVRVHVEG----KPSLSEFRVV-ECFEKATLVQVHPVTGRTHQIR 243
Query: 380 VHCAEALGTPIVGDYKYG 397
VH + G PI GD KYG
Sbjct: 244 VHASHE-GHPIAGDEKYG 260
>gi|347529629|ref|YP_004836377.1| putative pseudouridine synthase [Sphingobium sp. SYK-6]
gi|345138311|dbj|BAK67920.1| putative pseudouridine synthase [Sphingobium sp. SYK-6]
Length = 244
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 48/236 (20%)
Query: 188 SGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSY 243
SG L+P D + ++ D ++L+KP +P+ G L +HN + A+L++
Sbjct: 11 SGGLSPITDRVLFI-------DGEAIILDKPAGLPVDPPRDGSLSLHNHL-----ASLTF 58
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
+ P VHRLDR++SG LL+ R ++ T F A+ + Y
Sbjct: 59 GFERWPVAVHRLDRDTSGCLLLARNPKAAKRFTEAFE---------------ARAVEKSY 103
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
A+V G P +G+I PL+K T ++ +G ++A+T + +L +G
Sbjct: 104 LAVVDGVPDAPEGVIDLPLAK--RSTAATGWRMVPDAAG----KQAVTHWHLLAAR-DGR 156
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY----------GWFVHRRWKQMPR 409
+ + P T R HQLR H LG I+GD Y G +H R MPR
Sbjct: 157 ALLRFTPETGRTHQLRAHSLHGLGFGILGDPVYSSGAEPLWTGGLLLHARSLSMPR 212
>gi|329961970|ref|ZP_08299981.1| pseudouridine synthase, RluA family [Bacteroides fluxus YIT 12057]
gi|328530618|gb|EGF57476.1| pseudouridine synthase, RluA family [Bacteroides fluxus YIT 12057]
Length = 541
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 106/230 (46%), Gaps = 34/230 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL---SYDYNEGPKLVHRLDRESSG 261
+ + D + V+NKP G L V +A++ +L Y EGP +VHRLD +SG
Sbjct: 340 IIFEDRWLAVINKPA-----GMLSVPGKEEAISVYSLMRQRYPDAEGPMIVHRLDMATSG 394
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
LL++ +TK+ L F K +++ K RY AL+ G + G I P
Sbjct: 395 LLIIAKTKQVHRNLQAQF----KERTVRK-----------RYIALLDGIVPQNTGTIELP 439
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L LLD + Q E + A+T++ VL N + I L P T R HQLR+H
Sbjct: 440 LCPNLLDRPR-------QMVNTEHGKVAITDFEVLERKGN-ITRISLYPHTGRTHQLRIH 491
Query: 382 CAEALG--TPIVGDYKYGWFVHRRWKQMPRVD-IEPTSGKPYKLRRPDGL 428
A LG PI+GD YG R ++ I P SG+ KL + G
Sbjct: 492 TAHPLGLHCPIIGDELYGKKADRLCLHAETIEFIHPISGETIKLTKKAGF 541
>gi|410637062|ref|ZP_11347650.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola lipolytica
E3]
gi|410143441|dbj|GAC14855.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola lipolytica
E3]
Length = 319
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 31/220 (14%)
Query: 178 RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDAL 236
R+S+ + PS L D++ L + + D ++V+NKP + + G + ++AL
Sbjct: 73 RVSETTNQAPSTKL----DKVATLESHILFEDDVLIVVNKPSGMAVHGGSGLSFGVIEAL 128
Query: 237 AAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC 296
A + + E LVHRLDR++SG LL+ + + ++ L ++K++ K
Sbjct: 129 RALRPTAKFLE---LVHRLDRDTSGCLLIAKKRSALKHLHEQL----RNKTVDK------ 175
Query: 297 EAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVL 356
RY ALV G E + + APL K ++ G ERI+ G +E+ T YR+L
Sbjct: 176 -----RYQALVHGHWPENRFKVKAPLLKNIVKSG--ERIVSVSTDG----KESETRYRIL 224
Query: 357 GPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ + +E P+T R HQ+RVHC A G PI D KY
Sbjct: 225 -ETFSQATLVEASPITGRTHQIRVHCQHA-GHPIACDSKY 262
>gi|148554296|ref|YP_001261878.1| pseudouridine synthase [Sphingomonas wittichii RW1]
gi|148499486|gb|ABQ67740.1| pseudouridine synthase [Sphingomonas wittichii RW1]
Length = 250
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 31/197 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ + D +V++KP +P+ G + + N + +L S+ + P VHRLDR++S
Sbjct: 37 ILFIDGEAMVIDKPSGLPVDPPRDGSISLENHLQSL-----SFGFKRWPSAVHRLDRDTS 91
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ F + K+ Y A++ G P ++ G++
Sbjct: 92 GCLLLARNPKAHKRYALAFEEGKVEKT---------------YLAILDGIPAQESGLVDL 136
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL+K+ + + G + A T +RV+ ++G + +E RP T R HQ+RV
Sbjct: 137 PLAKISTREAGWRMV------GDPRGKPATTAWRVVA-TVDGRALVEFRPTTGRTHQIRV 189
Query: 381 HCAEALGTPIVGDYKYG 397
H A +G PI GD YG
Sbjct: 190 HAATGIGLPIHGDPVYG 206
>gi|374261709|ref|ZP_09620287.1| hypothetical protein LDG_6679 [Legionella drancourtii LLAP12]
gi|363537803|gb|EHL31219.1| hypothetical protein LDG_6679 [Legionella drancourtii LLAP12]
Length = 263
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 28/199 (14%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + + D+ LV+NKP + + G + ++AL Y E L+HRLD+E+
Sbjct: 30 LKDCIIFEDACFLVINKPSGIAVHGGSGLSLGVIEALRKTRQDLAYLE---LIHRLDKET 86
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS-PKEKQGII 318
SG LL+ + + ++ + L K+ YWAL+ +KQ +
Sbjct: 87 SGCLLLAKKRSTLRAMHALLEAREVQKT---------------YWALLTHRWEGKKQVTV 131
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
HA L K +L G ER++ + G +AS+ T +++L C W+E P T R HQ+
Sbjct: 132 HAALEKNILKSG--ERVVSVNDEG-KASE---TTFKLLENYQQAC-WVEASPKTGRTHQI 184
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A LG IVGD KYG
Sbjct: 185 RVHSAH-LGHVIVGDEKYG 202
>gi|392421831|ref|YP_006458435.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri CCUG 29243]
gi|390984019|gb|AFM34012.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri CCUG 29243]
Length = 317
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 30/203 (14%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLD 256
++ L + + + D A++VLNKP + + G + + ++AL L D E +LVHRLD
Sbjct: 90 LERLEKAIVHEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQ--LRPDAKE-LELVHRLD 146
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEK 314
R++SGLL+ V K +S+ + + A + + +RY ALV G +
Sbjct: 147 RDTSGLLM-----------------VAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETS 189
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+ ++APL K L G ER++ G +EA+T +RVL + + +E +P+T R
Sbjct: 190 KKQVNAPLLKNTLRSG--ERMVEVTEDG----KEALTLFRVLRRFGDFATLVEAKPVTGR 243
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A G I GD KYG
Sbjct: 244 THQIRVHARHA-GHSIAGDSKYG 265
>gi|332208640|ref|XP_003253415.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 1 [Nomascus leucogenys]
Length = 377
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 135/289 (46%), Gaps = 62/289 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFR---------------TRQVVKKYWAITVRVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +DDGK ++ ++N+ Q A+T+Y+VL
Sbjct: 199 VVDIPIVEKEVQGQQQHHKMTLSPSYRVDDGKMVKVRRSRNA-----QVAVTQYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
KL GL+ K + LHLH R+L + P L S+ + +L+
Sbjct: 306 KKL----GLEQSKARYIP----LHLHARQL----ILPALGSRKEELNLV 342
>gi|148359833|ref|YP_001251040.1| ribosomal large subunit (23S rRNA) pseudouridine synthase C
[Legionella pneumophila str. Corby]
gi|296107879|ref|YP_003619580.1| ribosomal large subunit pseudouridine synthase C [Legionella
pneumophila 2300/99 Alcoy]
gi|397667955|ref|YP_006509492.1| 23S rRNA pseudouridylate synthase [Legionella pneumophila subsp.
pneumophila]
gi|148281606|gb|ABQ55694.1| ribosomal large subunit (23S rRNA) pseudouridine synthase C
[Legionella pneumophila str. Corby]
gi|295649781|gb|ADG25628.1| ribosomal large subunit pseudouridine synthase C [Legionella
pneumophila 2300/99 Alcoy]
gi|395131366|emb|CCD09634.1| 23S rRNA pseudouridylate synthase [Legionella pneumophila subsp.
pneumophila]
Length = 315
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 28/199 (14%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + + DS++LV+NKP + + G + ++AL Y E LVHRLDRE+
Sbjct: 85 LKDSIIFEDSSLLVINKPAGIAVHGGSGLSLGVIEALRKTRHDLSYLE---LVHRLDRET 141
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI-I 318
SG LL+ + + ++ + L + + YWAL+ K+ I I
Sbjct: 142 SGCLLLAKKRSTLRAIQALLE---------------AREVQKIYWALLTHRWDGKKKITI 186
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ Q G +AS+ T++++L C W+E P T R HQ+
Sbjct: 187 TAPLEKNTLKSG--ERVVSVQKDG-KASE---TDFKLLENYHQAC-WVEASPKTGRTHQI 239
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G IVGD KYG
Sbjct: 240 RVHSA-YFGHVIVGDGKYG 257
>gi|54298185|ref|YP_124554.1| ribosomal large subunit pseudouridine synthase [Legionella
pneumophila str. Paris]
gi|53751970|emb|CAH13394.1| Ribosomal large subunit pseudouridine synthase [Legionella
pneumophila str. Paris]
Length = 315
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 28/199 (14%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + + DS++LV+NKP + + G + ++AL Y E LVHRLDRE+
Sbjct: 85 LKDSIIFEDSSLLVINKPAGIAVHGGSGLSLGVIEALRKTRHDLSYLE---LVHRLDRET 141
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI-I 318
SG LL+ + + ++ + L + + YWAL+ K+ I I
Sbjct: 142 SGCLLLAKKRSTLRAIQALLE---------------AREVQKIYWALLTHRWDGKKKITI 186
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ Q G +AS+ T++++L C W+E P T R HQ+
Sbjct: 187 TAPLEKNTLKSG--ERVVSVQKDG-KASE---TDFKLLENYHQAC-WVEASPKTGRTHQI 239
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G IVGD KYG
Sbjct: 240 RVHSA-YFGHVIVGDGKYG 257
>gi|409422873|ref|ZP_11259951.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
HYS]
Length = 318
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 126/257 (49%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RLPERDEPVPVAQ-----GLLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G ++ + A + D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLNFGVIE-AFRQMRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLL++ + + S+L L + + + + +RY ALV G + ++A
Sbjct: 151 GLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWATAKKQVNA 195
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL K L G ER++ + G +EA+T +RVL + +E RP+T R HQ+RV
Sbjct: 196 PLLKSNLRSG--ERMVEVNDEG----KEALTIFRVLRRFGEFATIVEARPITGRTHQIRV 249
Query: 381 HCAEALGTPIVGDYKYG 397
H A G I GD KYG
Sbjct: 250 HALHA-GHCIAGDSKYG 265
>gi|452747532|ref|ZP_21947327.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri NF13]
gi|452008648|gb|EME00886.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri NF13]
Length = 317
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 30/203 (14%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLD 256
++ L + + + D A++VLNKP + + G + + ++AL L D E +LVHRLD
Sbjct: 90 LERLEKAIVHEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQ--LRPDAKE-LELVHRLD 146
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEK 314
R++SGLL+ V K +S+ + + A + + +RY ALV G +
Sbjct: 147 RDTSGLLM-----------------VAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETS 189
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+ ++APL K L G ER++ G +EA+T +RVL + + +E +P+T R
Sbjct: 190 KKQVNAPLLKNTLRSG--ERMVEVTEDG----KEALTLFRVLRRFGDFATLVEAKPVTGR 243
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A G I GD KYG
Sbjct: 244 THQIRVHARHA-GHSIAGDSKYG 265
>gi|383481276|ref|YP_005390191.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
gi|378933615|gb|AFC72118.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
Length = 303
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 28/193 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NK + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YADDNLIAINKLAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIDK 193
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
G T +I + E + A+T Y+VL + N IE P+T R HQLR+H A
Sbjct: 194 ---SKGSTPKI---TDIDSENGKLAITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH-AR 246
Query: 385 ALGTPIVGDYKYG 397
LG PI+GD KYG
Sbjct: 247 LLGCPILGDDKYG 259
>gi|54295134|ref|YP_127549.1| ribosomal large subunit pseudouridine synthase [Legionella
pneumophila str. Lens]
gi|53754966|emb|CAH16454.1| Ribosomal large subunit pseudouridine synthase [Legionella
pneumophila str. Lens]
Length = 315
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 28/199 (14%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + + DS++LV+NKP + + G + ++AL Y E LVHRLDRE+
Sbjct: 85 LKDSIIFEDSSLLVINKPAGIAVHGGSGLSLGVIEALRKTRHDLSYLE---LVHRLDRET 141
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI-I 318
SG LL+ + + ++ + L + + YWAL+ K+ I I
Sbjct: 142 SGCLLLAKKRSTLRAIHALLE---------------AREVQKIYWALLTHRWDGKKKITI 186
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ Q G +AS+ T++++L C W+E P T R HQ+
Sbjct: 187 TAPLEKNTLKSG--ERVVSVQKDG-KASE---TDFKLLENYHQAC-WVEASPKTGRTHQI 239
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G IVGD KYG
Sbjct: 240 RVHSA-YFGHVIVGDEKYG 257
>gi|392309499|ref|ZP_10272033.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas citrea NCIMB
1889]
Length = 316
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP+ +++ ++++ PV ++++R + +P N D++
Sbjct: 46 GEVRVNKKRVKPVYRLQVDDLVR-----IPPV-----KVAEREEFVPK-----NLDKVAG 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D ++V+NKP + + G + + A AL D + +LVHRLDR++S
Sbjct: 91 LEDAIIYEDKYLIVINKPSGMAVHGGSGLSYGL-IEAMRALRPD-EKSLELVHRLDRDTS 148
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ + + + KSL + + + M + YWALV G + K +
Sbjct: 149 GCLLISKRRSVL-------------KSLHEQLRE--KTMEKNYWALVTGEWQSKTKNVTE 193
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL K L G ER++ + E + + T ++VL + C+ ++ P+T R HQ+RV
Sbjct: 194 PLRKNTLQSG--ERVVRVDH---EEGKASHTRFKVL-QRFDDCTLVQASPVTGRTHQIRV 247
Query: 381 HCAEALGTPIVGDYKYG 397
H + G PI D KYG
Sbjct: 248 H-TQCKGHPIACDDKYG 263
>gi|392545827|ref|ZP_10292964.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas rubra ATCC
29570]
Length = 320
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 124/268 (46%), Gaps = 61/268 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTN-EVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP+ K++ N EV P PV +++++ + +P N D++
Sbjct: 46 GEVRVNKKRIKPVYKLQLNDEVRIP------PV-----KVAEKSEFVPK-----NLDKVA 89
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK--------- 250
L + Y D ++V+NKP + + G + LSY E +
Sbjct: 90 GLEDAILYEDKYLIVMNKPSGMAVHG------------GSGLSYGLIEAIRALRPDERNL 137
Query: 251 -LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
LVHRLDR++SG LL+ + + ++L L + + + M + YWALV G
Sbjct: 138 ELVHRLDRDTSGCLLISKRR---AILKGLHEQLRE------------KTMEKNYWALVCG 182
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
K + PL K L G ER++ + E + + T +RVL +G + ++
Sbjct: 183 EWSAKHKNVTEPLRKNTLQSG--ERVVRVDH---EEGKASHTRFRVL-ERFDGATLVQAS 236
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T R HQ+RVH + G PI D KYG
Sbjct: 237 PVTGRTHQIRVH-TQCKGHPIACDDKYG 263
>gi|359788929|ref|ZP_09291894.1| pseudouridine synthase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255234|gb|EHK58162.1| pseudouridine synthase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 331
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 128/289 (44%), Gaps = 62/289 (21%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY--DYNEG------PKLVHRLD 256
+ + D ++VLNKPP + + H N L A + + D G P +VHRLD
Sbjct: 82 ILFEDDQLIVLNKPPGLVV--HPGAGNWTGTLVNALIHHCGDSLSGIGGVRRPGIVHRLD 139
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SG++++ +T + L+ F+D ++ L +A Y ALV P+ + G
Sbjct: 140 KDTSGVMVVAKTDRAHQALSEAFADHGRASDLERA-----------YIALVWNIPQRRAG 188
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM------INGCSWIELRP 370
I APL + +T R ++ + G + ++ A+T Y VL + +E R
Sbjct: 189 TIDAPLGRA---SDRTRRAVVPE--GRDDARHAVTHYAVLERFGEKQEEFARAALVECRL 243
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDV 430
T R HQ+RVH A +G P++GD YG + ++P EP K
Sbjct: 244 ETGRTHQIRVHMAH-IGHPVIGDPDYGAAFRSKANRLP----EPLKSK------------ 286
Query: 431 QKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMK 479
++ P LH R L + P +L+RF A +P+ M+
Sbjct: 287 -----VNAFPRQALHARLLAFRH--------PVSGELMRFEAPLPADME 322
>gi|171913853|ref|ZP_02929323.1| pseudouridine synthase, RluA family protein [Verrucomicrobium
spinosum DSM 4136]
Length = 303
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 104/213 (48%), Gaps = 32/213 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG-------PKLVHRLDR 257
V + D I+V+NKP + + H N L A L + N P +VHRLD+
Sbjct: 80 VLFEDEHIIVINKPDGLVV--HPAAGNPDGTLVNALLFHCKNLSGIGGELRPGIVHRLDK 137
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG ++ + + + LT FS + L+K Y A V G+P G
Sbjct: 138 ETSGCMVAAKHDLAHTRLTEAFS----QRDLTKI-----------YLAAVNGTPSSSSGR 182
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I + + +D R +A +G EA +EA+TE+ + + GC+ I R LT R HQ
Sbjct: 183 IENRIGRHPVD-----RKRMALVTG-EAGKEALTEWDRVA-VHQGCALIRCRLLTGRTHQ 235
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
+RVH EALG PI+GD Y + R+ +MPR+
Sbjct: 236 IRVHMKEALGCPILGDTIYAQ-IQRQLIKMPRL 267
>gi|298375940|ref|ZP_06985896.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
3_1_19]
gi|298266977|gb|EFI08634.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
3_1_19]
Length = 545
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 100/205 (48%), Gaps = 33/205 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAA---AALSYDYNEGPKLVHRLDRESSG 261
+ Y D +LV+NKP +G L V DA + ++ Y GP +VHRLD +SG
Sbjct: 341 ILYEDDYLLVINKP-----EGMLSVPGKGDADSVYQRLSILYPEATGPIIVHRLDMATSG 395
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
LLL +TKE+ L F K++++ K RY AL+ G + +G I P
Sbjct: 396 LLLAAKTKEAHQNLQAQF----KNRTIQK-----------RYIALLEGEVPQDEGEIRLP 440
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L LD R I+++ G + A+T YRVL +G + I P T R HQLRVH
Sbjct: 441 LCPDPLD---RPRQIVSEEFG----KPALTHYRVL-ERTSGKTLIAFYPQTGRTHQLRVH 492
Query: 382 CA--EALGTPIVGDYKYGWFVHRRW 404
A + L PI+GD YG R +
Sbjct: 493 AAHPQGLHCPILGDELYGRKAERLY 517
>gi|224024462|ref|ZP_03642828.1| hypothetical protein BACCOPRO_01187 [Bacteroides coprophilus DSM
18228]
gi|224017684|gb|EEF75696.1| hypothetical protein BACCOPRO_01187 [Bacteroides coprophilus DSM
18228]
Length = 547
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 30/222 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDA-LAAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y D I+V+NKP + +P N +D+ L Y ++ P LVHRLD ++SGLL
Sbjct: 346 IIYEDPWIVVVNKPAGM---LSVPGKNGLDSVLQRLQELYPESDSPLLVHRLDMDTSGLL 402
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L + K L LF +++ + K RY AL+ G+P++ +G I PL
Sbjct: 403 LAAKDKNIHQCLQALF----ETRQIRK-----------RYTALLQGNPRQDEGTIDLPLC 447
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
D + Q E ++A+T +RV G + + PLT R HQLRVH A
Sbjct: 448 PDFSDRPR-------QQVNWELGKKAVTRFRV-EERSGGTTRVSFWPLTGRTHQLRVHAA 499
Query: 384 --EALGTPIVGDYKYGWFVHRRWKQMPRVDI-EPTSGKPYKL 422
E L +PI+GD YG R + ++ P +G+ +L
Sbjct: 500 HPEGLDSPILGDPLYGNQADRLYLHAAELEFTHPVTGETIRL 541
>gi|333893458|ref|YP_004467333.1| ribosomal large subunit pseudouridine synthase C [Alteromonas sp.
SN2]
gi|332993476|gb|AEF03531.1| ribosomal large subunit pseudouridine synthase C [Alteromonas sp.
SN2]
Length = 314
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 120/267 (44%), Gaps = 60/267 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K+ ++V+ PV + EG PS P D+I
Sbjct: 46 GEVRVNKGRVKPEYKLVADDVVR-----IPPVRVSEGTPG------PS----PKLDKIAA 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + + D I+V+NKP + + G + LS+ EG +
Sbjct: 91 LESQILFEDERIIVINKPSGIAVHG------------GSGLSFGLIEGLRALRPDANFME 138
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG +L+ + + S L + + K M +RY ALV G
Sbjct: 139 LVHRLDRDTSGCILIAKKR---SALRHMHEQLRTGK------------MDKRYQALVAGQ 183
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ + + APL K +L G ER++ G + + T YR+L + + +E P
Sbjct: 184 WPDNRFKVKAPLRKNVLQSG--ERMVSVSEDG----KPSETRYRIL-QKFDTATLVEASP 236
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVHC A PI D KYG
Sbjct: 237 ITGRTHQIRVHCLHA-EHPIACDPKYG 262
>gi|169346799|ref|ZP_02865750.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
gi|169297081|gb|EDS79203.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
Length = 298
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 131/278 (47%), Gaps = 54/278 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+K N V++ G I + +S E S + P +I+ + Y DS ILVL
Sbjct: 48 VKMNYVVKTGEEIKIELSKKE-----------SQNIEPEKMDIE-----IVYEDSDILVL 91
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP-----KLVHRLDRESSGLLLMGRTKE 270
NK P + + P + + A + Y + E +LV RLD +SGL+++G+ +
Sbjct: 92 NKKPFMVVH---PTRSHPNGTLANGILYYFKESNQDCIVRLVSRLDMNTSGLIIIGKNQY 148
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
+ +L+ N+ K+ + +RY A+V G+ +EK+G I+ P+ + D
Sbjct: 149 AHMVLS------NEMKT---------DKFQKRYLAIVHGNLEEKEGTINRPIYRPAEDTI 193
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
K R++ E QE++T Y+V+ NG +E T R HQ+RVH + +LG PI
Sbjct: 194 K--RVV------DERGQESITHYKVIESY-NGADLVECLLETGRTHQIRVHLS-SLGHPI 243
Query: 391 VGDYKYGW----FVHRRWKQMPRVDI-EPTSGKPYKLR 423
GD YG F+ R+ +D P + KP LR
Sbjct: 244 FGDSLYGTEDEEFISRQALHAYGLDFYSPKTKKPLSLR 281
>gi|339494688|ref|YP_004714981.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
gi|386021348|ref|YP_005939372.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri DSM 4166]
gi|327481320|gb|AEA84630.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri DSM 4166]
gi|338802060|gb|AEJ05892.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri ATCC 17588 = LMG 11199]
Length = 317
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 30/203 (14%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLD 256
++ L + Y D A++VLNKP + + G + + ++AL L D E +LVHRLD
Sbjct: 90 LERLESAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQ--LRPDAKE-LELVHRLD 146
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEK 314
R++SGLL+ V K +S+ + + A + + +RY ALV G
Sbjct: 147 RDTSGLLM-----------------VAKKRSMLRHLHQALRGDGVDKRYMALVRGRWDTS 189
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+ + APL K L G ER++ G +EA+T +RVL + + +E +P+T R
Sbjct: 190 KKQVSAPLLKNTLRSG--ERMVEVTEDG----KEALTLFRVLRRFGDFATLVEAKPVTGR 243
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A G I GD KYG
Sbjct: 244 THQIRVHARHA-GHSIAGDSKYG 265
>gi|296123212|ref|YP_003630990.1| RluA family pseudouridine synthase [Planctomyces limnophilus DSM
3776]
gi|296015552|gb|ADG68791.1| pseudouridine synthase, RluA family [Planctomyces limnophilus DSM
3776]
Length = 623
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 118/246 (47%), Gaps = 54/246 (21%)
Query: 156 IKTNEVMEPGARIF--LPVSMVEGRISKRYDTIPSGTLNP--NADEIDYLRRLVKYRDSA 211
++ +E ++PG RI LP GTL P NAD I +L Y D +
Sbjct: 375 MRLDETVQPGQRIIHRLP-----------------GTLEPAVNAD-IRWL-----YEDES 411
Query: 212 ILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKE 270
I+V+NKP +P+ H N++ L A YD + P+ HRLD ++G+L++ RT+
Sbjct: 412 IVVINKPAPLPVHASGRFHRNTLQYLLAQI--YD-PQSPRAAHRLDAMTTGVLVLSRTRH 468
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
L FS K Y A V G P E+ HAP++ V G
Sbjct: 469 MAGRLQPQFSRREVEKV---------------YLARVQGEPAEESFECHAPMTDVAGVMG 513
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
+ + ++ G+EAS T +R++ + +G S +E+RP+T R +Q+RVH LG PI
Sbjct: 514 SRD---IDESGGVEAS----TLFRLVQRLEDGTSLLEVRPITGRTNQIRVHLWH-LGLPI 565
Query: 391 VGDYKY 396
+GD Y
Sbjct: 566 LGDPLY 571
>gi|294141325|ref|YP_003557303.1| ribosomal large subunit pseudouridine synthase C [Shewanella
violacea DSS12]
gi|293327794|dbj|BAJ02525.1| ribosomal large subunit pseudouridine synthase C [Shewanella
violacea DSS12]
Length = 319
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDT-IPSGTLNPNADEID 199
G+ V + ++KP K++ +++ PV RIS R D PS L ++
Sbjct: 47 GEVRVNKKRIKPEYKLQDGDIVR-----IPPV-----RISDRSDRPGPSAKLT----KVS 92
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D +I+VLNKP + + G V ++A+ + + + E LVHRLD++
Sbjct: 93 QLEDRIVFEDKSIIVLNKPSGIAVHGGSGVDFGVIEAMRSLRPTQKFLE---LVHRLDKD 149
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G+ + + +I
Sbjct: 150 TSGVLLIAKKR---SALRHLHDQLRFKK------------MQKDYQALVKGTWQARDKVI 194
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K+ L G ERI+ G +E T +++L G + ++ P+T R HQ+
Sbjct: 195 KAPLLKLTLKSG--ERIVRVNQEG----KECETRFKIL-QRYQGATLVQASPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 248 RVHCQYA-GHPIACDDKY 264
>gi|386013234|ref|YP_005931511.1| RluA family pseudouridine synthase [Pseudomonas putida BIRD-1]
gi|397694052|ref|YP_006531933.1| RluA family pseudouridine synthase [Pseudomonas putida DOT-T1E]
gi|421522317|ref|ZP_15968959.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida LS46]
gi|313499940|gb|ADR61306.1| RluA family pseudouridine synthase [Pseudomonas putida BIRD-1]
gi|397330782|gb|AFO47141.1| RluA family pseudouridine synthase [Pseudomonas putida DOT-T1E]
gi|402753936|gb|EJX14428.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida LS46]
Length = 318
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 127/258 (49%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP KI+ +++ PV R+ +R + P +
Sbjct: 48 GEVRVNKGRVKPEYKIQAGDIVR-----VPPV-----RLPERDEPAPVAQ-----GLLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + Y D A++V+NKP + + G + ++AL L D E +LVHRLDR++
Sbjct: 93 LEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQ--LRPDAKE-LELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + + + + +RY ALV G + ++
Sbjct: 150 SGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWPTSKKQVN 194
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ + G +EA+T +RVL + + +E RP+T R HQ+R
Sbjct: 195 APLLKSNLRSG--ERMVEVNDEG----KEALTLFRVLRRFGDFATIVEARPITGRTHQIR 248
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 249 VHTLHA-GHMIAGDSKYG 265
>gi|289624528|ref|ZP_06457482.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
gi|422584462|ref|ZP_16659570.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330869277|gb|EGH03986.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. aesculi str. 0893_23]
Length = 318
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQA-----LLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G+ Q +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATAQKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G ++A+T ++VL + + +E +P+T R HQ+
Sbjct: 194 RAPLMKSNLRSG--ERMVEVNEEG----KKALTIFKVLRRFGDFATMVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHTLHA-GHAIAGDTKYG 265
>gi|395492700|ref|ZP_10424279.1| pseudouridine synthase [Sphingomonas sp. PAMC 26617]
Length = 230
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 38/224 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D LV++KP +P+ G L + N +D L ++ + P VHRLDR++S
Sbjct: 6 VLFLDGEALVIDKPAGLPVDRPRDGSLSLENHLDGL-----TFGFKRWPVPVHRLDRDTS 60
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ + L F + +RY A++ G + G+I
Sbjct: 61 GCLLLSRNPKAHARLQQAFEQ---------------GLVRKRYLAVLEGVVEGDSGMIDL 105
Query: 321 PLSKV-LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
L+KV ++DG R+I G + + T +RVL + +G S++E P T R HQ+R
Sbjct: 106 ALAKVSTVEDGW--RMI-----GSPEGKASRTHWRVLA-VKDGRSFVEFIPETGRTHQIR 157
Query: 380 VHCAEALGTPIVGDYKYG-----WFVHRRWKQMPRVDIEPTSGK 418
VH E LG +VGD YG +H +PR EP K
Sbjct: 158 VHALEGLGAAVVGDPVYGAGGGETLLHAAELTIPRAGKEPIVAK 201
>gi|374705008|ref|ZP_09711878.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
S9]
Length = 317
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 49/262 (18%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP KI+ ++ V + R+ +R + P +
Sbjct: 48 GEVRVNKGRIKPEYKIQVGDI----------VRVPPLRLPERDEPAPLA--------LGL 89
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L RL + Y D A+LV+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 90 LERLEASIVYEDKALLVINKPAGIAVHGGSGLNYGVIE-AFRQLRPDAKE-LELVHRLDR 147
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQ 315
++SGLL+ + K +S+ + ++A + + +RY ALV G+ +
Sbjct: 148 DTSGLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWPTAK 190
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
++APL K L G ER++ + G +EA+T +RVL + +E +P+T R
Sbjct: 191 KSVNAPLQKSNLRSG--ERMVEVSDEG----KEALTRFRVLRRFGEFATIVEAKPVTGRT 244
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A+ G I GD KYG
Sbjct: 245 HQIRVH-AQYAGHCIAGDTKYG 265
>gi|270157796|ref|ZP_06186453.1| RluA family pseudouridine synthase [Legionella longbeachae D-4968]
gi|289163935|ref|YP_003454073.1| ribosomal large subunit pseudouridine synthase [Legionella
longbeachae NSW150]
gi|269989821|gb|EEZ96075.1| RluA family pseudouridine synthase [Legionella longbeachae D-4968]
gi|288857108|emb|CBJ10923.1| Ribosomal large subunit pseudouridine synthase [Legionella
longbeachae NSW150]
Length = 318
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 32/201 (15%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + + DS++LV+NKP + + G + ++AL Y E L+HRLD+E+
Sbjct: 85 LQESIIFEDSSLLVINKPAGIAVHGGSGLSLGVIEALRKTRSDLAYLE---LIHRLDKET 141
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEA--MYQRYWALVIGS-PKEKQG 316
SG LL+ K +S+ +A + EA + + YWAL+ +K+
Sbjct: 142 SGCLLLA-----------------KKRSVLRAIHALLEAREVQKTYWALLTHRWEGKKRV 184
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I+ A L K +L G ERI+ + G +AS+ T +++L C W+E P T R H
Sbjct: 185 IVQAALEKNILKSG--ERIVKVKEEG-KASE---TAFKLLENYEQAC-WVEASPKTGRTH 237
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q+RVH A LG IVGD KYG
Sbjct: 238 QIRVHSAH-LGHVIVGDKKYG 257
>gi|333994405|ref|YP_004527018.1| ribosomal large subunit pseudouridine synthase C [Treponema
azotonutricium ZAS-9]
gi|333735205|gb|AEF81154.1| ribosomal large subunit pseudouridine synthase C [Treponema
azotonutricium ZAS-9]
Length = 221
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 37/197 (18%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ + + LV+NKP + ++G + S+D+L L+ +Y+ P LVHRLDR++SG++L
Sbjct: 6 ILFENKDCLVINKPAGLAVQGGEGIKTSLDSL----LAENYDPRPLLVHRLDRDTSGVIL 61
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + KE+ + + F++ ++ + K + C +P+ G+I PL
Sbjct: 62 VAKNKEAAARFSSYFAERSQGSQIRKLYLGICSK-----------TPQPSSGVIRLPLEI 110
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVL--GPMINGCSWIELRPLTCRKHQLRVHC 382
GKT +E+ T YR++ P I CS +EL + R HQ+R H
Sbjct: 111 ----KGKT--------------KESETRYRLVSENPGIP-CSLLELELGSGRMHQIRRHL 151
Query: 383 AEALGTPIVGDYKYGWF 399
A+ + PI+GD KYG F
Sbjct: 152 AQ-INCPILGDDKYGDF 167
>gi|325275825|ref|ZP_08141690.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
TJI-51]
gi|324099044|gb|EGB97025.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
TJI-51]
Length = 318
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 127/258 (49%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP KI+ +++ PV R+ +R + P +
Sbjct: 48 GEVRVNKGRVKPEYKIQAGDIVR-----VPPV-----RLPERDEPAPVAQ-----GLLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + Y D A++V+NKP + + G + ++AL L D E +LVHRLDR++
Sbjct: 93 LEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQ--LRPDAKE-LELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + + + + +RY ALV G + ++
Sbjct: 150 SGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWPTAKKQVN 194
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ + G +EA+T +RVL + + +E RP+T R HQ+R
Sbjct: 195 APLLKSNLRSG--ERMVEVNDEG----KEALTLFRVLRRFGDFATIVEARPITGRTHQIR 248
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 249 VHTLHA-GHMIAGDNKYG 265
>gi|300773309|ref|ZP_07083178.1| ribosomal large subunit pseudouridine synthase A [Sphingobacterium
spiritivorum ATCC 33861]
gi|300759480|gb|EFK56307.1| ribosomal large subunit pseudouridine synthase A [Sphingobacterium
spiritivorum ATCC 33861]
Length = 560
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 95/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D I V+NKP + + + +S+ AA + GP +VHRLD +SG+LL
Sbjct: 359 ILYDDEDIAVVNKPAEFLSVPGVHIQDSVYTRMQAA--FPEATGPIIVHRLDMSTSGILL 416
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + K++ + F D ++ +RY AL+ G KE +GII PL
Sbjct: 417 IAKHKDAHKFIQQQFID---------------HSIEKRYVALLDGVIKEDKGIIDLPLR- 460
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
Q E ++A+T+Y+VL ING + I P+T R HQLRVH A
Sbjct: 461 ------LDLDDRPRQMVCYEYGKKAVTKYQVLS-RINGQTKILFFPVTGRTHQLRVHAAH 513
Query: 385 ALG--TPIVGDYKYG 397
LG TPIVGD YG
Sbjct: 514 LLGLHTPIVGDDLYG 528
>gi|312131061|ref|YP_003998401.1| ribosomal large subunit pseudouridine synthase d [Leadbetterella
byssophila DSM 17132]
gi|311907607|gb|ADQ18048.1| ribosomal large subunit pseudouridine synthase D [Leadbetterella
byssophila DSM 17132]
Length = 240
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 26/197 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
V Y D+ ++V+NK V + +++ + YN+ ++ VHRLDR S
Sbjct: 6 VIYEDNHLIVVNKAAGVLVHSDSTGDKTLEDYVKEYIKDKYNKPGEVFLGTVHRLDRPVS 65
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+++ RT ++++ + LF K + + K YWA+ + P++K G +
Sbjct: 66 GVVIFARTSKALTRMNELF----KKRQIQKT-----------YWAITMRKPEKKSGRLTH 110
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K + + KTE A S +E +Q A +YR +G +N IE+ P+T R HQ+RV
Sbjct: 111 WLRKDSVQN-KTE----AFESEVEGAQRADLDYRYVG-TLNKHHLIEVNPITGRPHQIRV 164
Query: 381 HCAEALGTPIVGDYKYG 397
A ++GTPI GD KYG
Sbjct: 165 QLA-SMGTPIKGDVKYG 180
>gi|381203927|ref|ZP_09911031.1| pseudouridylate synthase [Sphingobium yanoikuyae XLDN2-5]
Length = 226
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 36/219 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D ++L+KP +P+ G + + N + A+L++ + P VHRLDR++S
Sbjct: 8 VLFIDGEAIILDKPAGLPVDAPRDGSISLENHL-----ASLTFGFQRWPLAVHRLDRDTS 62
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ K + A+ + +RY A++ G P+ +G I
Sbjct: 63 GCLLLARNPKA-------------HKRFAAAFE--AGTVEKRYVAVLEGVPEADEGTIAL 107
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L KV + R+I A+ A + A+T +R L + +G + I P T R HQ+RV
Sbjct: 108 SLKKVSTPS-QGWRMIAAK-----AGKPAVTHWRKLA-VKDGRALIAFTPETGRTHQIRV 160
Query: 381 HCAEALGTPIVGDYKYG-----WFVHRRWKQMPRVDIEP 414
H LG IVGD YG +H R+ +PR D +P
Sbjct: 161 HAQHGLGFGIVGDPVYGDGQGAMLLHSRFLSVPRGDNKP 199
>gi|398383271|ref|ZP_10541344.1| 23S RNA-specific pseudouridylate synthase [Sphingobium sp. AP49]
gi|397725236|gb|EJK85691.1| 23S RNA-specific pseudouridylate synthase [Sphingobium sp. AP49]
Length = 226
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 36/220 (16%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L LV + D ++L+KP +P+ G + + N + A+L++ + P VHRLD
Sbjct: 4 LSDLVLFIDGEAIILDKPAGLPVDAPRDGSISLENHL-----ASLTFGFQRWPLAVHRLD 58
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG LL+ R ++ K + A+ + +RY A++ G P+ +G
Sbjct: 59 RDTSGCLLLARNPKA-------------HKRFAAAFEAGT--VQKRYVAVLAGVPEADEG 103
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I L KV R+I A+ A + A+T +R L +G + I P T R H
Sbjct: 104 TIELSLKKV-STAASGWRMIAAK-----AGKPAVTHWRKLAEK-DGRALIAFTPETGRTH 156
Query: 377 QLRVHCAEALGTPIVGDYKYG-----WFVHRRWKQMPRVD 411
Q+RVH LG I+GD YG +H R+ +PR D
Sbjct: 157 QIRVHAEHGLGFGIMGDPVYGNGEGPMLLHSRFLSVPRGD 196
>gi|392555218|ref|ZP_10302355.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas undina NCIMB
2128]
Length = 319
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 123/267 (46%), Gaps = 59/267 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP+ K++ ++V+ P+ R+S+R + +PS D++
Sbjct: 46 GEVRVNKKRIKPVYKLQLDDVIR-----IPPI-----RVSEREEFVPS-----KLDKVTR 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + + D ++V+NKP + + G + LSY E +
Sbjct: 91 LEDDILFEDKYLIVINKPSGMAVHG------------GSGLSYGLIEALRVLRPEERSLE 138
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG LL+ + + S+LT L + + + M + YWALV G
Sbjct: 139 LVHRLDRDTSGCLLIAKRR---SVLTALHEQLRE------------KTMEKNYWALVEGQ 183
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
K + L K L G ER++ N+ + + T ++VL N CS ++ P
Sbjct: 184 WDSKTKNVTEGLRKNTLKSG--ERVVRVDNT---EGKPSHTRFKVL-ERFNDCSLVQASP 237
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVH + G I D KYG
Sbjct: 238 VTGRTHQIRVH-TQCQGHAIACDDKYG 263
>gi|104780776|ref|YP_607274.1| 23S rRNA pseudouridylate synthase [Pseudomonas entomophila L48]
gi|95109763|emb|CAK14468.1| 23S rRNA pseudouridylate synthase [Pseudomonas entomophila L48]
Length = 318
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 126/258 (48%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RLPERDEPAPVAQ-----GLLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + Y D A++V+NKP + + G + ++AL L D E +LVHRLDR++
Sbjct: 93 LEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQ--LRPDAKE-LELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + + + + +RY ALV G + ++
Sbjct: 150 SGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWPTSKKQVN 194
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ + G +EA+T +RVL + +E RP+T R HQ+R
Sbjct: 195 APLQKSNLRSG--ERMVEVNDEG----KEALTMFRVLRRFGEFATIVEARPITGRTHQIR 248
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 249 VHTLHA-GHMIAGDSKYG 265
>gi|348573903|ref|XP_003472730.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Cavia porcellus]
Length = 375
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 128/269 (47%), Gaps = 56/269 (20%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDA---LAAAALSYDYNEGPKLVHRLDR 257
L R + ++D I+V+NKP +P+ G V + + A L E L HRLD+
Sbjct: 93 LSRGILHQDKDIVVINKPYGLPVHGGPGVRLCISEVLPILAKVLHGHKAEPLHLCHRLDK 152
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ KE + LF +++ ++K +YWA+ + P G+
Sbjct: 153 ETTGVMVLAWEKEVAHQIQELF----RTRQVAK-----------KYWAVTVRVPVPSAGV 197
Query: 318 IHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
+ P+ + +D GK R+ +QN+ + A+T+Y+VL +
Sbjct: 198 VDIPIIEKEVQGQQQHHKMTLSPSYRMDRGKVVRVRASQNARV-----AVTQYQVLSSTV 252
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPY 420
+ + +EL+P+T KHQLRVH + L P++GD+KY + +++P +G
Sbjct: 253 SS-ALVELQPVTGIKHQLRVHLSFGLDCPVLGDHKYSAWNKLAPQKLP-------AGTLK 304
Query: 421 KLRRPDGLDVQKGSVLSKVPLLHLHCREL 449
+L GL+ K + LHLH R+L
Sbjct: 305 RL----GLEQSKARYIP----LHLHARQL 325
>gi|146282969|ref|YP_001173122.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri A1501]
gi|145571174|gb|ABP80280.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri A1501]
Length = 266
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 30/203 (14%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLD 256
++ L + Y D A++VLNKP + + G + + ++AL L D E +LVHRLD
Sbjct: 39 LERLESAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQ--LRPDAKE-LELVHRLD 95
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEK 314
R++SGLL+ V K +S+ + + A + + +RY ALV G
Sbjct: 96 RDTSGLLM-----------------VAKKRSMLRHLHQALRGDGVDKRYMALVRGRWDTS 138
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+ + APL K L G ER++ G +EA+T +RVL + + +E +P+T R
Sbjct: 139 KKQVSAPLLKNTLRSG--ERMVEVTEDG----KEALTLFRVLRRFGDFATLVEAKPVTGR 192
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A G I GD KYG
Sbjct: 193 THQIRVHARHA-GHSIAGDSKYG 214
>gi|256841173|ref|ZP_05546680.1| ribosomal large subunit pseudouridine synthase A [Parabacteroides
sp. D13]
gi|256737016|gb|EEU50343.1| ribosomal large subunit pseudouridine synthase A [Parabacteroides
sp. D13]
Length = 548
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 99/206 (48%), Gaps = 35/206 (16%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHL-PVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ Y D +LV+NKP VP KG + V+ + L Y GP +VHRLD +S
Sbjct: 341 ILYEDDYLLVINKPEGMLSVPGKGDVDSVYQRLSIL------YPEATGPIIVHRLDMATS 394
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL +TKE+ L F K++++ K RY AL+ G + +G I
Sbjct: 395 GLLLAAKTKEAHQNLQAQF----KNRTIQK-----------RYIALLEGEVPQDEGEIRL 439
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD + ++I+ E + A T YRVL +G + I P T R HQLRV
Sbjct: 440 PLCPDPLD--RPQQIV-----SEEFGKPAFTRYRVL-ERTSGKTLIAFYPQTGRTHQLRV 491
Query: 381 HCAEALG--TPIVGDYKYGWFVHRRW 404
H A LG PI+GD YG R +
Sbjct: 492 HAAHPLGLHCPILGDELYGRKAERLY 517
>gi|395444678|ref|YP_006384931.1| RluA family pseudouridine synthase [Pseudomonas putida ND6]
gi|388558675|gb|AFK67816.1| RluA family pseudouridine synthase [Pseudomonas putida ND6]
Length = 333
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 127/258 (49%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP KI+ +++ PV R+ +R + P +
Sbjct: 63 GEVRVNKGRVKPEYKIQAGDIVR-----VPPV-----RLPERDEPAPVAQ-----GLLQR 107
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + Y D A++V+NKP + + G + ++AL L D E +LVHRLDR++
Sbjct: 108 LEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQ--LRPDAKE-LELVHRLDRDT 164
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + + + + +RY ALV G + ++
Sbjct: 165 SGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWPTSKKQVN 209
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ + G +EA+T +RVL + + +E RP+T R HQ+R
Sbjct: 210 APLLKSNLRSG--ERMVEVNDEG----KEALTLFRVLRRFGDFATIVEARPITGRTHQIR 263
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 264 VHTLHA-GHMIAGDSKYG 280
>gi|372266753|ref|ZP_09502801.1| 23S rRNA pseudouridylate synthase C [Alteromonas sp. S89]
Length = 309
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 33/211 (15%)
Query: 192 NPNADEIDYLRRLVK----YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE 247
P A D LRR ++ Y +LV+NKP + + G V + AL Y E
Sbjct: 74 TPPAVAGDQLRRTLEAAILYDQGGLLVVNKPAGLAVHGGSGVRLGL----IEALRQMYPE 129
Query: 248 GP--KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
P +LVHRLDR++SG +L+ R + ++L + S++ K M + Y A
Sbjct: 130 SPFMELVHRLDRDTSGAILVARKR---AVLLHVQSELRAGK------------MDKSYLA 174
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
L +G Q ++ APL K L G ER+++ G ++ E R ++G +
Sbjct: 175 LAVGKWPRAQKLVEAPLRKNTLKSG--ERMVVVDGEGKPSTTRFQVEER-----LDGATL 227
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ P+T R HQ+RVH A+ +G P+ GD KY
Sbjct: 228 MRAEPVTGRTHQIRVH-AQFVGCPLAGDAKY 257
>gi|359436650|ref|ZP_09226744.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20311]
gi|358028695|dbj|GAA62993.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20311]
Length = 319
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 123/257 (47%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP+ K++ ++V+ P+ R+S+R + +PS D++
Sbjct: 46 GEVRVNKKRIKPVYKLQLDDVIR-----IPPI-----RVSEREEFVPS-----KLDKVTR 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + + D ++V+NKP + + G + S + A + +LVHRLDR++S
Sbjct: 91 LEDDILFEDKYLIVINKPSGMAVHGGSGL--SYGLIEALRVLRPEERSLELVHRLDRDTS 148
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ + + S+LT L + + + M + YWALV G K +
Sbjct: 149 GCLLIAKRR---SVLTALHEQLRE------------KTMEKNYWALVEGQWDSKTKNVTE 193
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K L G ER++ N+ + + T ++VL N CS ++ P+T R HQ+RV
Sbjct: 194 GLRKNTLKSG--ERVVRVDNT---EGKPSHTRFKVL-ERFNDCSLVQASPVTGRTHQIRV 247
Query: 381 HCAEALGTPIVGDYKYG 397
H + G I D KYG
Sbjct: 248 H-TQCQGHAIACDDKYG 263
>gi|402821406|ref|ZP_10870947.1| pseudouridine synthase [Sphingomonas sp. LH128]
gi|402265084|gb|EJU14906.1| pseudouridine synthase [Sphingomonas sp. LH128]
Length = 234
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 51/243 (20%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ + D LV++KP +PL G + + +D L ++ P VHRLD+++S
Sbjct: 6 ILFEDGEALVIDKPAGLPLDRPRAGGQCLEDRLDEL-----KLGFHREPAPVHRLDQDTS 60
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R +++ + F + K RY +V G E +G I
Sbjct: 61 GCLLLARNPKALKRFSAAFEERTVEK---------------RYLGIVAGEIAEDEGTIAL 105
Query: 321 PLSKV-LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
LSKV DG R+I A+ + A+T +R L NG + +E RP T R HQ+R
Sbjct: 106 NLSKVSTAKDGW--RMIPARKG-----KPAVTHWRKLD-TRNGLTLVEFRPETGRTHQIR 157
Query: 380 VHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKV 439
VH A LG P++GD YG SG P + GL V +G K
Sbjct: 158 VHAASGLGFPLLGDPVYGT----------------KSGAPRTMLHASGLTVPRGG--EKA 199
Query: 440 PLL 442
P++
Sbjct: 200 PIV 202
>gi|383483135|ref|YP_005392049.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
montanensis str. OSU 85-930]
gi|378935489|gb|AFC73990.1| ribosomal large subunit pseudouridine synthase C [Rickettsia
montanensis str. OSU 85-930]
Length = 303
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 100/195 (51%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YADDNLISINKPAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + L + D K K + K Y+A+ G P + G + + + K
Sbjct: 149 IAKN----YLSSVKLHDALKEKLVVKT-----------YFAVTYGKPIKNVGGVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y+VL + + IE P+T R HQLR+H
Sbjct: 194 ---SKGSTPQITDIDSENGKL-----AITYYKVLKSLDSNLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AKLLGCPILGDDKYG 259
>gi|148549014|ref|YP_001269116.1| RluA family pseudouridine synthase [Pseudomonas putida F1]
gi|148513072|gb|ABQ79932.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida F1]
Length = 333
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 127/258 (49%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP KI+ +++ PV R+ +R + P +
Sbjct: 63 GEVRVNKGRVKPEYKIQAGDIVR-----VPPV-----RLPERDEPAPVAQ-----GLLQR 107
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + Y D A++V+NKP + + G + ++AL L D E +LVHRLDR++
Sbjct: 108 LEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQ--LRPDAKE-LELVHRLDRDT 164
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + + + + +RY ALV G + ++
Sbjct: 165 SGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWPTSKKQVN 209
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ + G +EA+T +RVL + + +E RP+T R HQ+R
Sbjct: 210 APLLKSNLRSG--ERMVEVNDEG----KEALTLFRVLRRFGDFATIVEARPITGRTHQIR 263
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 264 VHTLHA-GHMIAGDSKYG 280
>gi|333998603|ref|YP_004531215.1| ribosomal large subunit pseudouridine synthase C [Treponema
primitia ZAS-2]
gi|333738829|gb|AEF84319.1| ribosomal large subunit pseudouridine synthase C [Treponema
primitia ZAS-2]
Length = 236
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 45/199 (22%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMG 266
+ + +VLNKP + ++G V S+D+L AA +++ P LVHRLD+++SGL+L+
Sbjct: 30 FENELCMVLNKPAGLAVQGGEGVGVSLDSLLAA----EFSPRPLLVHRLDKDTSGLILVA 85
Query: 267 RTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
++KE+ +L + +F+ + + Y A+ G PK + G I L
Sbjct: 86 KSKEAAALFSGIFA------------RSVPGTVLKLYLAVCSGCPKPESGTIETDL---- 129
Query: 327 LDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING------CSWIELRPLTCRKHQLRV 380
+ G AS++A T YR ING S +EL T R HQ+R
Sbjct: 130 ------------EIRG--ASRKAKTTYRC----INGDSHLLDFSLLELELGTGRMHQIRR 171
Query: 381 HCAEALGTPIVGDYKYGWF 399
H A ++G PI+GD KYG F
Sbjct: 172 HLA-SIGNPILGDDKYGDF 189
>gi|392551389|ref|ZP_10298526.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas spongiae
UST010723-006]
Length = 319
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 122/267 (45%), Gaps = 58/267 (21%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP+ K++ +V+ PV +++++ + +P N D+I
Sbjct: 46 GEVRVNKKRIKPVYKLQAGDVVR-----IPPV-----KVAEKQEFVPK-----NLDKIAK 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + + D ++VLNKP + + G + LSY E +
Sbjct: 91 LEDAILFEDKYLMVLNKPSGMAVHG------------GSGLSYGLIEALRSIRPDERNLE 138
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG LL+ + + S+L L + + + M + YWALV GS
Sbjct: 139 LVHRLDRDTSGCLLVSKKR---SVLRGLHEQLRE------------KTMEKNYWALVTGS 183
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
K + PL K L G ER++ + + SQ T +RVL + ++ P
Sbjct: 184 WASKIKNVTEPLRKNTLQSG--ERVVRVDEAEGKPSQ---TRFRVLERFGQFATLVQASP 238
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVH + G PI D KYG
Sbjct: 239 VTGRTHQIRVH-TQCKGHPIACDDKYG 264
>gi|422683288|ref|ZP_16741549.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|331012623|gb|EGH92679.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
Length = 318
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 125/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQA-----LLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAA-AALSYDYNEGPKLVHRLDRES 259
L + Y D A++VLNKP + + G + S + A L D E +LVHRLDR++
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGL--SFGVIEAFRQLRPDAKE-LELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGI 317
SGLL+ + K +S+ + ++A + + +RY ALV G+ Q
Sbjct: 150 SGLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATAQKQ 192
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER+ G +EA+T ++VL + + +E +P+T R HQ
Sbjct: 193 VRAPLMKSNLRSG--ERMGEVNEEG----KEALTIFKVLRRFGDFATMVEAKPVTGRTHQ 246
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 247 IRVHTLHA-GHAIAGDTKYG 265
>gi|404253090|ref|ZP_10957058.1| pseudouridine synthase [Sphingomonas sp. PAMC 26621]
Length = 230
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 38/224 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D LV++KP +P+ G L + N +D L ++ + P VHRLDR++S
Sbjct: 6 VLFLDGEALVIDKPAGLPVDRPRDGSLSLENHLDGL-----TFGFKRWPVPVHRLDRDTS 60
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ + L F + +RY A++ G + + G+I
Sbjct: 61 GCLLLSRNPKAHARLQQAFEQ---------------GLVRKRYLAVLEGVVEGESGLIDL 105
Query: 321 PLSKV-LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
L+KV ++DG R+I G + + T +RVL + +G S++E P T R HQ+R
Sbjct: 106 ALAKVSTVEDGW--RMI-----GSPEGKASRTHWRVLA-VKDGRSFVEFIPETGRTHQIR 157
Query: 380 VHCAEALGTPIVGDYKYG-----WFVHRRWKQMPRVDIEPTSGK 418
VH E LG +VGD YG +H +PR EP K
Sbjct: 158 VHALEGLGAAVVGDPVYGAGGGETLLHAAELTIPRPGKEPIVAK 201
>gi|220927321|ref|YP_002502623.1| RluA family pseudouridine synthase [Methylobacterium nodulans ORS
2060]
gi|219951928|gb|ACL62320.1| pseudouridine synthase, RluA family [Methylobacterium nodulans ORS
2060]
Length = 337
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 119/251 (47%), Gaps = 31/251 (12%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
I+ V GA I V G + P+ P A+E + + Y D ++V+
Sbjct: 39 IREGGVRLDGAEIRDAAVRVAGGQTVAVTVPPARPATPEAEERALI---IPYEDDDLIVI 95
Query: 216 NKPPKV---PLKGH--LPVHNSMDALAAAALS-YDYNEGPKLVHRLDRESSGLLLMGRTK 269
+KPP + P GH + N++ A A+LS P +VHRLD+++SGLL++ +
Sbjct: 96 DKPPGLVVHPAPGHDSGTLVNALIAHCGASLSGIGGVRRPGIVHRLDKDTSGLLVVAKND 155
Query: 270 ESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDD 329
+ + L+ F+D +S L +A Y ALV G P+ + G I A L++ D
Sbjct: 156 MAHAALSLQFADHGRSGQLERA-----------YLALVWGVPEPRAGRIDAALAR---SD 201
Query: 330 GKTERIILAQNSGLEASQEAMTEYR---VLGPMINGCSWIELRPLTCRKHQLRVHCAEAL 386
E+I + + E + A+T YR VLG + + R T R HQ+RVH A
Sbjct: 202 SNREKIAVVRP---EKGRHAITHYRTEAVLG-VREPVGLVRCRLETGRTHQIRVHLAH-R 256
Query: 387 GTPIVGDYKYG 397
G P++GD YG
Sbjct: 257 GHPLLGDATYG 267
>gi|431795967|ref|YP_007222871.1| 23S RNA-specific pseudouridylate synthase [Echinicola vietnamensis
DSM 17526]
gi|430786732|gb|AGA76861.1| 23S RNA-specific pseudouridylate synthase [Echinicola vietnamensis
DSM 17526]
Length = 244
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 100/198 (50%), Gaps = 26/198 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
V Y D+ +LV+NK V ++G ++ A ++ Y++ + VHR+DR S
Sbjct: 8 VVYEDNHLLVVNKHAGVLVQGDHTGDKTLTDYCKAYIAEKYDKPGAVFLHPVHRIDRPVS 67
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL++ RT +++ + LF K + + K YWA+V PKE+ G +
Sbjct: 68 GLVVFARTSKALERMMVLF----KKREVHKV-----------YWAIVKKRPKEEIGKLTH 112
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K ++ + A + +E S+ A +Y+ LG + N +E+RP T R HQ+RV
Sbjct: 113 YLKK-----DESRNVTTAYDKEVEGSKRAELDYKRLGKL-NDHWLVEVRPKTGRPHQIRV 166
Query: 381 HCAEALGTPIVGDYKYGW 398
A A+G PI GD +YG+
Sbjct: 167 QLA-AMGCPIRGDLRYGF 183
>gi|330502588|ref|YP_004379457.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina NK-01]
gi|328916874|gb|AEB57705.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina NK-01]
Length = 317
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +V+ P+ + E + + G L +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDVVR-----VPPLRLAE---RDEPEPLAQGLL-------ER 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G ++ + A L D + +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLNYGVIE-AFRQLRPDAKD-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLL++ + + S+L L + + + +RY ALV G + ++A
Sbjct: 151 GLLMIAKKR---SMLRHLHEQLR------------GDGVDKRYMALVRGHWATAKKQVNA 195
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL K L G ER++ G +EA+T +RVL + +E +P+T R HQ+RV
Sbjct: 196 PLQKSNLRSG--ERMVEVDGEG----KEALTLFRVLRRFGEFATLVEAKPVTGRTHQIRV 249
Query: 381 HCAEALGTPIVGDYKYG 397
H A G I GD KYG
Sbjct: 250 HAKHA-GHSIAGDSKYG 265
>gi|372271855|ref|ZP_09507903.1| ribosomal large subunit pseudouridine synthase C [Marinobacterium
stanieri S30]
Length = 324
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 31/220 (14%)
Query: 178 RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSM-DAL 236
RI +R ++ P +A ++L + + Y +++V+NKP + + G V M +AL
Sbjct: 76 RIPERGESAPV-----SASLAEHLEQAIVYESDSLVVINKPSGLAVHGGSGVSLGMIEAL 130
Query: 237 AAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC 296
+ E LVHRLDR++SG +++ + + S+L +L D + + ++K
Sbjct: 131 RQIRPKSRFLE---LVHRLDRDTSGCIMVAKKR---SMLRYLH-DALRQRKVNKI----- 178
Query: 297 EAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVL 356
Y ALV+G ++++ I APL + L G ER++ G + ++T ++VL
Sbjct: 179 ------YHALVVGRWEKRKQAIDAPLLRYELKSG--ERMVKVNPDG----KPSVTRFQVL 226
Query: 357 GPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
+ + IE RPLT R HQ+RVH A G PIVGD KY
Sbjct: 227 RRFQDAATLIEARPLTGRTHQIRVHTQYA-GHPIVGDVKY 265
>gi|302187286|ref|ZP_07263959.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. syringae 642]
Length = 318
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 125/259 (48%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQA-----LLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G+ +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATALKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ + G +EA+T ++VL + + +E +P+T R HQ+
Sbjct: 194 RAPLMKSNLRSG--ERMVEVNDEG----KEALTIFKVLRRFGDFATMVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHTLHA-GHAIAGDTKYG 265
>gi|325860423|ref|ZP_08173535.1| pseudouridine synthase, RluA family [Prevotella denticola CRIS
18C-A]
gi|325482081|gb|EGC85102.1| pseudouridine synthase, RluA family [Prevotella denticola CRIS
18C-A]
Length = 577
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 115/255 (45%), Gaps = 57/255 (22%)
Query: 207 YRDSAILVLNKPP---KVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
Y D ++ V+ KPP VP + LP S+ ++ Y P +VHRLD +SGLL
Sbjct: 364 YEDDSLAVVAKPPGLLSVPGRDGLP---SVYSILKERWKGRYE--PFMVHRLDMATSGLL 418
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK----QGIIH 319
++ R+ E+ L F++ + ++Y AL+ S +K +G I
Sbjct: 419 VVARSPEAHRALQAQFTN---------------HTVRKQYTALLSPSFLDKHLPPEGRIE 463
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE-----LRPLTCR 374
PLS L D + + + N + A+TEYRV G G + E L PLT R
Sbjct: 464 LPLSP--LPDDRPRQCVDYVNG-----KTAVTEYRVAGKTTYGKTGQEAVKVILYPLTGR 516
Query: 375 KHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQMPRVDI-EPTSGKPYKLRRPDGLDVQ 431
HQLR+HCA + LGTPI+GD YG R W ++ P +GK
Sbjct: 517 THQLRIHCAHPDGLGTPIIGDSLYGQHAGRLWLHAGHLEFTHPVTGK------------- 563
Query: 432 KGSVLSKVPLLHLHC 446
++ VPL HL C
Sbjct: 564 --KMVFDVPLQHLEC 576
>gi|251778563|ref|ZP_04821483.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243082878|gb|EES48768.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 302
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 126/286 (44%), Gaps = 63/286 (22%)
Query: 128 FNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIP 187
F +GL++ E + D IK+N ++ I + + VE
Sbjct: 32 FIQGLIEKESIKVNDKL-----------IKSNYKLKACDEIVITMPEVE----------- 69
Query: 188 SGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE 247
TL +++ID + Y D ++V+NK + + P + + AL + +
Sbjct: 70 --TLKVESEDIDLD---ILYEDKDVIVVNKEQGMVVH---PAPGNYNGTLVNALLFHCTD 121
Query: 248 --------GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAM 299
P +VHR+D+++SG+L++ + ES + L D +M
Sbjct: 122 LSSINGVIRPGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKD---------------HSM 166
Query: 300 YQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
+ Y+ALV G K G+I PL + K R+ +A E + A+T Y VL
Sbjct: 167 NREYYALVEGRFKNDSGVIDKPLGR-----DKKNRLKIAIT---EDGRRAITHYEVLERY 218
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
GC+ I+ + T R HQ+RVH A +LG P+VGD YG F +R+K
Sbjct: 219 DTGCTLIKCKLETGRTHQIRVHMA-SLGHPLVGDPLYG-FKKQRFK 262
>gi|198425133|ref|XP_002130987.1| PREDICTED: similar to RNA pseudouridylate synthase domain
containing 4 [Ciona intestinalis]
Length = 494
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 36/219 (16%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
LR+ V Y D+ +++ NKP +P+ V N + L+ + + L HRLD
Sbjct: 160 LRKNVIYADNKLVIFNKPYGLPMHDGDGTKQTVKNVLPFLSKMVYGINTDIPLHLCHRLD 219
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+ ++G+ + E + LF + ++Y A+V+G P+ +G
Sbjct: 220 KNTTGITICSTDAEMADYVMGLFRQ---------------RRVLRKYLAVVVGEPEPMKG 264
Query: 317 IIHAPLSKVLLDDGKT----ERIILAQN------SGLE------ASQEAMTEYRVLGPMI 360
++ P+S+ ++ K+ R+I+ + +G E A+T YR +
Sbjct: 265 VVDMPMSESIVSATKSTKRHSRMIIKPDVRYDDATGKEYPLRNAGGHTAITHYRTID-TT 323
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWF 399
S +EL+P T KHQLRVH A+ L PI+GD+KY +
Sbjct: 324 GDLSLVELQPQTTVKHQLRVHMADGLSCPILGDHKYSRY 362
>gi|402496954|ref|YP_006556214.1| pseudouridylate synthase 23S RNA-specific [Wolbachia endosymbiont
of Onchocerca ochengi]
gi|398650227|emb|CCF78397.1| pseudouridylate synthase 23S RNA-specific [Wolbachia endosymbiont
of Onchocerca ochengi]
Length = 325
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKV----PLKGHLPVHNSMDALAAAALSYDYNEGP 249
N + ++ L+ + Y D IL +NKP V +KG + + + +D + +
Sbjct: 86 NQELVNILKDNILYEDKYILAVNKPTGVIVQGGIKGKVSISDLLDRIREGKIF------- 138
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
K+VHRLD+++SG+++ L F + K+ Y AL G
Sbjct: 139 KIVHRLDKDTSGVIIFAHNTNVARYLMEEFKEQRVKKT---------------YLALTSG 183
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
P + +G+I PL K + E++++ + S Q A T + V+ + ++++L+
Sbjct: 184 IPSKNKGVIDYPLIKKCI--SGQEKVVVDKYS----PQSATTHFSVIARLEQNVAYVKLQ 237
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T R HQLR H A + PI+GD KYG
Sbjct: 238 PITGRTHQLRAHLA-YINCPILGDGKYG 264
>gi|430742493|ref|YP_007201622.1| RluA family pseudouridine synthase [Singulisphaera acidiphila DSM
18658]
gi|430014213|gb|AGA25927.1| pseudouridine synthase, RluA family [Singulisphaera acidiphila DSM
18658]
Length = 261
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 101/197 (51%), Gaps = 26/197 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY----NEGPKLVHRLDRESS 260
V Y D+ LV+NKP + +G + S+ LA++ L Y N LVHRLDR +S
Sbjct: 22 VLYEDNHCLVVNKPAGLLAQGDVTGDLSLVDLASSYLKTKYQKPGNVYVGLVHRLDRPTS 81
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G++L+ RT ++ S L+ F ++ S+ K Y A++ GS E G +
Sbjct: 82 GVVLLARTSKAASRLSAQF----RAGSIEKI-----------YHAVIDGSCPEDAGEWND 126
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K D+ + ++ N+ QEA +RVLG + +ELRP+T R HQ+RV
Sbjct: 127 TLWK---DEERNVVRVVPPNT--PGGQEARLAFRVLG-RFPRTTQLELRPITGRSHQIRV 180
Query: 381 HCAEALGTPIVGDYKYG 397
A A G PIVGD KYG
Sbjct: 181 QLA-ARGCPIVGDRKYG 196
>gi|114562667|ref|YP_750180.1| RluA family pseudouridine synthase [Shewanella frigidimarina NCIMB
400]
gi|114333960|gb|ABI71342.1| ribosomal large subunit pseudouridine synthase C [Shewanella
frigidimarina NCIMB 400]
Length = 318
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 27/206 (13%)
Query: 192 NPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPK 250
+PN + L + + D+ ++VLNKP + + G V + ++ L + + E
Sbjct: 84 SPNLSRVSQLEDRIIHEDNHLIVLNKPAGIAVHGGSGVDYGVIEGLRSLRPQQKFLE--- 140
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLD+++SG+LL+ + + ++ L +SK++ K Y ALV G
Sbjct: 141 LVHRLDKDTSGVLLVAKKRSALKHLHEQL----RSKTMQKD-----------YLALVRGE 185
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ ++ APL K+ L G ERI+ G +E+ T Y+++ GC+ ++ P
Sbjct: 186 WQASDKVVKAPLLKITLKSG--ERIVRVNKEG----KESETRYKIM-QRYQGCTLVKASP 238
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKY 396
+T R HQ+RVHC A G I D KY
Sbjct: 239 VTGRTHQIRVHCQYA-GHAIACDDKY 263
>gi|94497492|ref|ZP_01304062.1| pseudouridylate synthase [Sphingomonas sp. SKA58]
gi|94423123|gb|EAT08154.1| pseudouridylate synthase [Sphingomonas sp. SKA58]
Length = 225
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 103/216 (47%), Gaps = 36/216 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D L+L+KP +P+ G + + N + A+L++ + P VHRLDR++S
Sbjct: 8 VLFLDGEALILDKPAGLPVDAPRDGSMSLENHL-----ASLTFGFQRWPLAVHRLDRDTS 62
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ K + A+ + +RY A++ G P E +G I
Sbjct: 63 GCLLLARNPKA-------------HKRFAAAFE--AGTVTKRYIAVLDGVPAETEGTIAL 107
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L KV + R+I A+ A + A+T +R L +G + + P T R HQ+RV
Sbjct: 108 SLKKVSTPT-QGWRMIAAK-----AGKAAVTHWRKLAER-DGRALVAFTPETGRTHQIRV 160
Query: 381 HCAEALGTPIVGDYKYG-----WFVHRRWKQMPRVD 411
H LG I+GD YG +H R+ +PR D
Sbjct: 161 HAQHGLGFGIMGDPVYGNGEGPMLLHSRFLSVPRGD 196
>gi|388548082|ref|ZP_10151337.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
M47T1]
gi|388273798|gb|EIK93405.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
M47T1]
Length = 319
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RLPERDEPVPLAQ--------GL 89
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + + D A++V+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 90 LQRLEASIVFEDKALIVINKPAGIAVHGGSGLNYGVIE-AFRQLRPDTKE-LELVHRLDR 147
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + S+L L + + + + +RY ALV G +
Sbjct: 148 DTSGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGRWDTARKQ 192
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
++APL K L G ER++ G +EA+T ++VL + + +E RP+T R HQ
Sbjct: 193 VNAPLQKSNLRSG--ERMVEIDEEG----KEALTLFKVLRRFGDFATMVEARPITGRTHQ 246
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 247 IRVHALHA-GHNIAGDTKYG 265
>gi|357406442|ref|YP_004918366.1| rRNA pseudouridylate synthase C [Methylomicrobium alcaliphilum 20Z]
gi|351719107|emb|CCE24781.1| Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
[Methylomicrobium alcaliphilum 20Z]
Length = 318
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 104/206 (50%), Gaps = 34/206 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D +LVLNKP + G + +D+ L P +LVHRLDR++SG LL
Sbjct: 100 YEDDVLLVLNKPSGFAVHGG----SGLDSAVIEGLRQLRPAAPFLELVHRLDRDTSGCLL 155
Query: 265 MGRTKESVSLLTWLF--SDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
+ + + ++ L LF D+ K+ Y A++ G K+ ++ APL
Sbjct: 156 IAKKRSALRKLHELFRGDDIQKT-----------------YLAVLAGRWARKKLVVTAPL 198
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
K + G ER++ SG +EA T +R + + N + +E P T R HQ+RVH
Sbjct: 199 QKNVNKGG--ERMVEVSRSG----KEAETFFRRIKLLPN-ATLVEASPKTGRTHQIRVHA 251
Query: 383 AEALGTPIVGDYKYGWF-VHRRWKQM 407
A LG PI+GD +YG F V++ +K++
Sbjct: 252 A-WLGHPIIGDERYGDFEVNKAFKKI 276
>gi|423279706|ref|ZP_17258619.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 610]
gi|404584694|gb|EKA89338.1| RluA family pseudouridine synthase [Bacteroides fragilis HMW 610]
Length = 539
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 104/220 (47%), Gaps = 34/220 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL---SYDYNEGPKLVHRLDRESSG 261
+ + D +LV++KP +G L V + L+A +L Y GP +VHRLD +SG
Sbjct: 338 ILFEDEWLLVIHKP-----EGLLSVPGKSEELSAYSLLRARYPEATGPMIVHRLDMATSG 392
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
LLL+ +TKE L F + ++ ++Y AL+ G +G I P
Sbjct: 393 LLLVAKTKEVHQHLQAQFEN---------------HSIKKQYTALLEGILPTDEGTIDLP 437
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
+ LLD + Q + E+ ++A+T Y V+ NG + I P T R HQLRVH
Sbjct: 438 ICPDLLDRPR-------QKADRESGKKAVTRYCVIDRK-NGRTRIAFFPQTGRTHQLRVH 489
Query: 382 CAE--ALGTPIVGDYKYGWFVHRRWKQMPRVD-IEPTSGK 418
A L PI GD YG R + R++ I P SG+
Sbjct: 490 SAHPSGLNCPIAGDELYGKRAERLYLHAERLEFIHPMSGQ 529
>gi|327312606|ref|YP_004328043.1| RluA family pseudouridine synthase [Prevotella denticola F0289]
gi|326945498|gb|AEA21383.1| pseudouridine synthase, RluA family [Prevotella denticola F0289]
Length = 577
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 115/255 (45%), Gaps = 57/255 (22%)
Query: 207 YRDSAILVLNKPP---KVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
Y D ++ V+ KPP VP + LP S+ ++ Y P +VHRLD +SGLL
Sbjct: 364 YEDDSLAVVAKPPGLLSVPGRDGLP---SVYSILKERWKGRYE--PFMVHRLDMATSGLL 418
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK----QGIIH 319
++ R+ E+ L F++ + ++Y AL+ S +K +G I
Sbjct: 419 VVARSPEAHRALQAQFTN---------------HTVRKQYTALLSLSFLDKHLPPEGRIE 463
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE-----LRPLTCR 374
PLS L D + + + N + A+TEYRV G G + E L PLT R
Sbjct: 464 LPLSP--LPDDRPRQCVDYVNG-----KTAVTEYRVAGKTTYGKTGQEAVKVILYPLTGR 516
Query: 375 KHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQMPRVDI-EPTSGKPYKLRRPDGLDVQ 431
HQLR+HCA + LGTPI+GD YG R W ++ P +GK
Sbjct: 517 THQLRIHCAHPDGLGTPIIGDSLYGQHAGRLWLHAGHLEFTHPVTGK------------- 563
Query: 432 KGSVLSKVPLLHLHC 446
++ VPL HL C
Sbjct: 564 --KMVFDVPLQHLEC 576
>gi|336450813|ref|ZP_08621260.1| pseudouridine synthase, RluA family [Idiomarina sp. A28L]
gi|336282636|gb|EGN75868.1| pseudouridine synthase, RluA family [Idiomarina sp. A28L]
Length = 321
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 151/310 (48%), Gaps = 54/310 (17%)
Query: 144 FVEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLR 202
V +G+++ +K IK + ++ G I +P R++++ D +P NPN D+I L
Sbjct: 41 IVRKGEVRVNKKRIKPDYKLQEGDEIRIPPV----RVNEKPD-LP----NPNLDKISQLE 91
Query: 203 RLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
+ + D ++V+NKP + + G + + ++ L A + + E LVHRLDR++SG
Sbjct: 92 NCIVFEDDYMVVVNKPAGMAVHGGSGLQYGLIEGLRALRPTAKFLE---LVHRLDRDTSG 148
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
LL++ + + ++ L + + K+ Y ALV GS K + AP
Sbjct: 149 LLMVAKKRSALRALHEQLREKDMDKT---------------YIALVFGSWPGKIKKVDAP 193
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG--PM--INGCSWIELRPLTCRKHQ 377
L K L G ER++ EA + ++T ++V P+ IN + +E P+T R HQ
Sbjct: 194 LLKNTLQSG--ERVVRVD----EAGKASLTRFKVRERYPLSEIN-TTLVEAMPVTGRTHQ 246
Query: 378 LRVHCAEALGTPIVGDYKYGW----------FVHRRWKQMPRVDIE-PTSGKPYKLRRPD 426
+RVH A+ G PI D KYG ++R + R+ I+ P SG+P + P
Sbjct: 247 IRVH-AQCAGHPIAQDQKYGMRGFDEQLRKIGLNRLFLHAERLSIKHPHSGEPIQFFAP- 304
Query: 427 GLDVQKGSVL 436
L+ Q VL
Sbjct: 305 -LEKQLNDVL 313
>gi|218512946|ref|ZP_03509786.1| RNA-pseudouridine synthase protein, ribosomal large subunit C
[Rhizobium etli 8C-3]
Length = 303
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 19/181 (10%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILV 214
++K++ ++PG + +P V+ ++ + I L ++D D L R+V + D ++V
Sbjct: 2 RVKSDARVQPGQTVRVPPLDVDAKL--KSGPIAGKDLKHSSD-FDLLSRMVLHEDEKVIV 58
Query: 215 LNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSL 274
LNKPP + ++G V +D + A S E P+LVHRLDR++SG+L++ RT+ +
Sbjct: 59 LNKPPGIAVQGGSGVARHIDQMLEAWTS-PKGEKPRLVHRLDRDTSGVLVIARTRGAAQK 117
Query: 275 LTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTER 334
LT F + + K+ YWALV G P++ + I L K DG R
Sbjct: 118 LTAAFRERDTKKT---------------YWALVKGVPRKHEDKISTWLVKEATADGDRMR 162
Query: 335 I 335
I
Sbjct: 163 I 163
>gi|406997571|gb|EKE15603.1| hypothetical protein ACD_11C00118G0003 [uncultured bacterium]
Length = 310
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 130/270 (48%), Gaps = 41/270 (15%)
Query: 140 MGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEG---RISKRYDTIPSGTLNPNAD 196
+ + F + + IR+IK ++ G I +VEG I+ +D NPN
Sbjct: 19 LSEEFFSMSRGEIIRQIKKGTILINGKVIKPSYILVEGDNVEINFVFDE-KKLIANPN-- 75
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLK-GHLPVHNSMDALAAA---ALSYDYNEG---- 248
++ + + D ILVL+KP + + N++ A ++ Y+E
Sbjct: 76 ----IKIKIVFEDENILVLDKPFGTQMHPSAVEKENTVANWLVAKYPEIADVYDESVDGY 131
Query: 249 --PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
P +VHRLD+++SGL+++ + K+S L +F++ + ++Y AL
Sbjct: 132 LRPGIVHRLDKDTSGLVVVAKNKKSFDELKNIFAE---------------RQIEKKYVAL 176
Query: 307 VIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
V G+ + K+GII PL++ + K ++I ++ G + A+T Y+VL + I
Sbjct: 177 VFGNLQNKEGIIDKPLTRAT--NFKKQKIATGKSRG--KIRNAVTTYQVLKSYVE-YDLI 231
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
E P T R HQ+R H + ++G PIVGD KY
Sbjct: 232 EAIPKTGRMHQIRAHFS-SIGHPIVGDEKY 260
>gi|53712433|ref|YP_098425.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
fragilis YCH46]
gi|52215298|dbj|BAD47891.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
fragilis YCH46]
Length = 539
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 102/217 (47%), Gaps = 28/217 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ + D +LVL+KP V S+ +L A Y GP +VHRLD +SGLLL
Sbjct: 338 ILFEDQWLLVLHKPEGVLSVPGKSEEQSIYSLLRA--RYPEATGPLVVHRLDMATSGLLL 395
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+T+E L F + +S+ K RY AL+ G E++G+I P+
Sbjct: 396 AAKTQEVHRHLQAQFEN----RSIKK-----------RYIALLDGILPEEEGVIDLPICP 440
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
LD + Q E + A+T Y+V+ NG + I PLT R HQLRVH A
Sbjct: 441 DYLDRPR-------QMVNEELGKTAITRYQVMDRK-NGQTRIAFFPLTGRTHQLRVHAAH 492
Query: 385 ALG--TPIVGDYKYGWFVHRRWKQMPRVD-IEPTSGK 418
LG PIVGD YG R + ++ I P SG+
Sbjct: 493 PLGLNCPIVGDELYGRKAERLYLHAEYLEFIHPVSGQ 529
>gi|336426422|ref|ZP_08606432.1| hypothetical protein HMPREF0994_02438 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010857|gb|EGN40837.1| hypothetical protein HMPREF0994_02438 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 339
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 34/237 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP----KLVHRLDRESS 260
+ Y D +++L+K +P+ H ++N ++LA Y ++G + V+RLDR+++
Sbjct: 127 IVYEDEDLMILDKAADMPV--HPSMNNYENSLANGLAWYFSSQGVPFIFRCVNRLDRDTT 184
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL ++ + S S+L+ + S + + Y A+V G+ G ++A
Sbjct: 185 GLTIIAKHMVSSSILSVMASR---------------REIKREYLAIVSGTGLPPSGTVNA 229
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL + D R++ QN + ++T YRVL NGCS + L T R HQ+RV
Sbjct: 230 PLGRK--PDSAIMRMVDFQNG-----EPSVTHYRVLKE-TNGCSLLSLHLETGRTHQIRV 281
Query: 381 HCAEALGTPIVGDYKYG---WFVHRRWKQMPRVDI-EPTSGKPYKLRRPDGLDVQKG 433
H + LG PI+GD+ Y +HR+ R++ P +GKP P D+++
Sbjct: 282 H-MQYLGHPIIGDFLYNPDMTLIHRQALHSCRLEFYHPITGKPMLFTSPMPEDMRQA 337
>gi|194212968|ref|XP_001502415.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Equus caballus]
Length = 377
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 142/305 (46%), Gaps = 67/305 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGP-KLVHRL 255
L R + ++D +LV+NKP +P+ G L + + + LA + + + P L HRL
Sbjct: 95 LSRGIIHQDKDLLVINKPYGLPVHGGPGVQLCISDVLPILAK--ILHGHKADPLHLCHRL 152
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+E++G++++ KE + LF +++ ++K +YWA+ + P
Sbjct: 153 DKETTGVMVLAWEKEVAHQVQELF----RTRQVAK-----------KYWAITVRVPVPSA 197
Query: 316 GIIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGP 358
G++ P+ + +D GK R+ + +N+ + A+T+Y+VL
Sbjct: 198 GVVDIPIIEKEVQGRQHHHKMTLSPSYRMDSGKMVRVRMRRNAHV-----AVTQYQVLSN 252
Query: 359 MINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGK 418
++ + +EL+P T KHQLRVH + L PI+GD+KY W ++ + + K
Sbjct: 253 TLSS-ALLELQPATGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKLSVGTLK 306
Query: 419 PYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHM 478
L++ S +P LHLH R+L + P L S+ + L V +P +
Sbjct: 307 KLGLQQ---------SKARHIP-LHLHARQL----ILPALGSRKEE---LNLVCRLPRYF 349
Query: 479 KISWN 483
S N
Sbjct: 350 VRSLN 354
>gi|60680595|ref|YP_210739.1| ribosomal large subunit pseudouridine synthase [Bacteroides
fragilis NCTC 9343]
gi|60492029|emb|CAH06791.1| putative ribosomal large subunit pseudouridine synthase
[Bacteroides fragilis NCTC 9343]
Length = 539
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 116/259 (44%), Gaps = 41/259 (15%)
Query: 163 EPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVP 222
EP R L VE S+RY +L+ N EI + D +LVL+KP V
Sbjct: 309 EPILRHMLQGLDVEPAPSERY------SLSQNMPEI-------LFEDQWLLVLHKPEGVL 355
Query: 223 LKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDV 282
S+ +L A Y GP +VHRLD +SGLLL + +E L F +
Sbjct: 356 SVPGKSEEQSIYSLLRA--RYPEATGPLVVHRLDMATSGLLLAAKAQEVHRHLQAQFEN- 412
Query: 283 NKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSG 342
+S+ K RY AL+ G E++G+I P+ LD + Q
Sbjct: 413 ---RSIKK-----------RYIALLDGILPEEEGVIDLPICPDYLDRPR-------QMVN 451
Query: 343 LEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALG--TPIVGDYKYGWFV 400
E + A+T YRV+ NG + I PLT R HQLRVH A LG PIVGD YG
Sbjct: 452 EELGKTAITRYRVMDRK-NGQTRIAFFPLTGRTHQLRVHAAHPLGLNCPIVGDELYGRKA 510
Query: 401 HRRWKQMPRVD-IEPTSGK 418
R + ++ I P SG+
Sbjct: 511 ERLYLHAEYLEFIHPVSGQ 529
>gi|167032492|ref|YP_001667723.1| RluA family pseudouridine synthase [Pseudomonas putida GB-1]
gi|166858980|gb|ABY97387.1| pseudouridine synthase, RluA family [Pseudomonas putida GB-1]
Length = 333
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 126/258 (48%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP KI+ +++ PV R+ +R + P +
Sbjct: 63 GEVRVNKGRVKPEYKIQAGDIVR-----VPPV-----RLPERDEPAPVAQ-----GLLQR 107
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + Y D A++V+NKP + + G + ++AL L D E +LVHRLDR++
Sbjct: 108 LEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQ--LRPDAKE-LELVHRLDRDT 164
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + + + + +RY ALV G + ++
Sbjct: 165 SGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWPTSKKQVN 209
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ + G +EA+T +RVL + +E RP+T R HQ+R
Sbjct: 210 APLLKSNLRSG--ERMVEVSDEG----KEALTLFRVLRRFGEFATIVEARPITGRTHQIR 263
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 264 VHTLHA-GHMIAGDSKYG 280
>gi|410098064|ref|ZP_11293045.1| RluA family pseudouridine synthase [Parabacteroides goldsteinii
CL02T12C30]
gi|409224154|gb|EKN17089.1| RluA family pseudouridine synthase [Parabacteroides goldsteinii
CL02T12C30]
Length = 541
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 36/231 (15%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHL-PVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ + D+ ++ +NKP VP K + V++ + A Y GP +VHRLD +S
Sbjct: 340 ILFEDNWLVAINKPAGMLSVPGKADIDSVYHRLKA------RYPEATGPMIVHRLDMATS 393
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+LL+ +TKE L F KS+ + K RY AL+ G+ K+GII
Sbjct: 394 GILLVAKTKEVHQNLQAQF----KSRMVKK-----------RYAALLDGTVIPKEGIIDL 438
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD R I++ G + A+T+Y+VL N + I PLT R HQLRV
Sbjct: 439 PLC---LDPMDRPRQIVSTEHG----KPAITQYKVLAHNGNR-TRITFYPLTGRTHQLRV 490
Query: 381 HCAEALG--TPIVGDYKYGWFVHRRWKQMPRVDI-EPTSGKPYKLRRPDGL 428
H + LG PI+GD YG R + ++ P SG+ ++ + G
Sbjct: 491 HASHPLGLNAPIIGDELYGKGADRLYLHAEFLEFRHPVSGQIIRIEKKAGF 541
>gi|170720703|ref|YP_001748391.1| RluA family pseudouridine synthase [Pseudomonas putida W619]
gi|169758706|gb|ACA72022.1| pseudouridine synthase, RluA family [Pseudomonas putida W619]
Length = 333
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 126/258 (48%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP KI+ +++ PV R+ +R + P +
Sbjct: 63 GEVRVNKGRVKPEYKIQAGDIVR-----VPPV-----RLPERDEPAPVAQ-----GLLQR 107
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + Y D A++V+NKP + + G + ++AL L D E +LVHRLDR++
Sbjct: 108 LEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQ--LRPDAKE-LELVHRLDRDT 164
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + + + + +RY ALV G + ++
Sbjct: 165 SGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWPTSKKQVN 209
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ + G +EA+T +RVL + +E RP+T R HQ+R
Sbjct: 210 APLLKSNLRSG--ERMVEVNDEG----KEALTLFRVLRRFGEFATIVEARPITGRTHQIR 263
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 264 VHTLHA-GHMIAGDSKYG 280
>gi|339486466|ref|YP_004700994.1| RluA family pseudouridine synthase [Pseudomonas putida S16]
gi|431801444|ref|YP_007228347.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida HB3267]
gi|338837309|gb|AEJ12114.1| RluA family pseudouridine synthase [Pseudomonas putida S16]
gi|430792209|gb|AGA72404.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida HB3267]
Length = 318
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 125/258 (48%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP KI+ +++ PV R+ +R + P +
Sbjct: 48 GEVRVNKGRVKPEYKIQAGDIVR-----VPPV-----RLPERDEPAPVAQ-----GLLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + Y D A++V+NKP + + G + ++AL L D E +LVHRLDR++
Sbjct: 93 LEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQ--LRPDAKE-LELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + + + + +RY ALV G + +
Sbjct: 150 SGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWPTSKKQVS 194
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ + G +EA+T +RVL + +E RP+T R HQ+R
Sbjct: 195 APLLKSNLRSG--ERMVEVNDEG----KEALTLFRVLRRFGEFATIVEARPITGRTHQIR 248
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 249 VHTLHA-GHMIAGDSKYG 265
>gi|152986000|ref|YP_001347558.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PA7]
gi|150961158|gb|ABR83183.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PA7]
Length = 318
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 33/198 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK-----LVHRLDRES 259
+ Y D A++V+NKP + + G ++A + P+ LVHRLDR++
Sbjct: 97 IVYEDKALIVVNKPAGIAVHGG-------SGVSAGVIEVFRQLRPEARDIELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + K + K RY ALV G + I
Sbjct: 150 SGLLMIAKKR---SMLRHLHEALRGEKIVDK-----------RYHALVRGHWPAGKKNIR 195
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ G ++A+TE+RVL + + +E RP+T R HQ+R
Sbjct: 196 APLLKNNLRSG--ERMVEVNVEG----KDALTEFRVLRRFGDFATLVEARPITGRTHQIR 249
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 250 VHAKHA-GHAIAGDPKYG 266
>gi|451948094|ref|YP_007468689.1| ribosomal large subunit pseudouridine synthase D [Desulfocapsa
sulfexigens DSM 10523]
gi|451907442|gb|AGF79036.1| ribosomal large subunit pseudouridine synthase D [Desulfocapsa
sulfexigens DSM 10523]
Length = 329
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 48/252 (19%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE-- 247
TL P D L Y D ++L+++KPP + + P + D L Y E
Sbjct: 86 TLAPQNIPFDLL-----YEDDSLLIVSKPPGIVVH---PAVGNPDGTLVNGLLYHCQEIA 137
Query: 248 ------GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQ 301
P +VHRLD+++SG++++ +T + LL F K +++ K
Sbjct: 138 DVGDTIRPGIVHRLDKDTSGIMVVAKTAQCHRLLGEAF----KERTVEK----------- 182
Query: 302 RYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMIN 361
+Y ALV G ++ G I AP+++ L K + + G + A + +RVL
Sbjct: 183 KYLALVFGVLSQRSGRIVAPIARHPLQRQKMA--VCEEGRG----RYAASSWRVLEEYSE 236
Query: 362 GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR--------VDIE 413
GCS +++ T R HQ+RVH A +LG P+ GD YG R +Q PR +
Sbjct: 237 GCSLVQVLIETGRTHQIRVHMA-SLGHPVAGDSLYGRA--RNTRQYPRQMLHAHSLSLVH 293
Query: 414 PTSGKPYKLRRP 425
P SG P P
Sbjct: 294 PISGVPLSFTAP 305
>gi|421530547|ref|ZP_15977021.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida S11]
gi|402212002|gb|EJT83425.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
putida S11]
Length = 318
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 125/258 (48%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP KI+ +++ PV R+ +R + P +
Sbjct: 48 GEVRVNKGRVKPEYKIQAGDIVR-----VPPV-----RLPERDEPAPVAQ-----GLLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + Y D A++V+NKP + + G + ++AL L D E +LVHRLDR++
Sbjct: 93 LEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQ--LRPDAKE-LELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + + + + +RY ALV G + +
Sbjct: 150 SGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWPTSKKQVS 194
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ + G +EA+T +RVL + +E RP+T R HQ+R
Sbjct: 195 APLLKSNLRSG--ERMVEVNDEG----KEALTLFRVLRRFGEFATIVEARPITGRTHQIR 248
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 249 VHTLHA-GHMIAGDSKYG 265
>gi|209809356|ref|YP_002264894.1| putative RNA pseudouridylate synthase [Aliivibrio salmonicida
LFI1238]
gi|208010918|emb|CAQ81323.1| putative RNA pseudouridylate synthase [Aliivibrio salmonicida
LFI1238]
Length = 561
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 29/201 (14%)
Query: 205 VKYRDSAILVLNKPPK-VPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y D AI+++NKP + + + G + + A Y GP +VHRLD +SGLL
Sbjct: 360 IVYEDEAIVIVNKPAEFLSVPGKFITDSVQTRIKA---RYPQATGPLIVHRLDMSTSGLL 416
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
++ T E+ +K + K + D + +RY AL+ G+ GII PL+
Sbjct: 417 VLTLTAET-------------NKQVQKQFID--RTVEKRYTALLEGNIALNDGIIDLPLT 461
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
L D R ++ G ++A T ++V+ N + + L P T R HQLRVHCA
Sbjct: 462 GDLED---RPRQMVDHKQG----RKAETTFQVI-ERNNNQTKVYLYPKTGRTHQLRVHCA 513
Query: 384 E--ALGTPIVGDYKYGWFVHR 402
LGTPIVGD YG+ +R
Sbjct: 514 HQAGLGTPIVGDDLYGFKSNR 534
>gi|260589549|ref|ZP_05855462.1| ribosomal large subunit pseudouridine synthase D [Blautia hansenii
DSM 20583]
gi|331082975|ref|ZP_08332095.1| hypothetical protein HMPREF0992_01019 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260540117|gb|EEX20686.1| ribosomal large subunit pseudouridine synthase D [Blautia hansenii
DSM 20583]
gi|330399970|gb|EGG79628.1| hypothetical protein HMPREF0992_01019 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 294
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 42/233 (18%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLV----HRLDRESS 260
+ Y D IL++NKP +P+ H ++N + LA Y +G V +RLDR+++
Sbjct: 83 IVYEDEDILLVNKPADMPV--HPSINNYDNTLANGIAHYYQVQGETFVFRCINRLDRDTT 140
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLL++ + S S+L+ N+ K+ +++ Y A+V G PK++ I A
Sbjct: 141 GLLIIAKNALSASILS------NQMKA---------REIHRTYLAVVFGIPKKEADTITA 185
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
P+++ ++ ER + N + A+T Y+V+ S ++L T R HQ+RV
Sbjct: 186 PIARK--ENSAIERCVDFIN-----GERAVTNYQVVASK-EDYSLLKLSLETGRTHQIRV 237
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQMPRVD--------IEPTSGKPYKLRRP 425
H A+ +G P++GDY Y + + ++ RV I P +G+P K P
Sbjct: 238 H-AKYMGNPLLGDYLY----NPDFSRIQRVALHSYSLSFIHPLTGQPMKFSAP 285
>gi|431926826|ref|YP_007239860.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri RCH2]
gi|431825113|gb|AGA86230.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri RCH2]
Length = 317
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 30/203 (14%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLD 256
++ L + + Y D A++VLNKP + + G + + ++AL L D E +LVHRLD
Sbjct: 90 LERLDKAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQ--LRPDAKE-LELVHRLD 146
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEK 314
R++SGLL+ V K +S+ + + A + + +RY ALV G +
Sbjct: 147 RDTSGLLM-----------------VAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETS 189
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+ ++APL K L G ER++ G +EA+T + VL + +E +P+T R
Sbjct: 190 KKQVNAPLLKNTLRSG--ERMVEVTEDG----KEALTLFHVLRRFGEFATLVEAKPVTGR 243
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A G I GD KYG
Sbjct: 244 THQIRVHARHA-GHSIAGDSKYG 265
>gi|398847229|ref|ZP_10604158.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM84]
gi|398251783|gb|EJN37011.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM84]
Length = 318
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + P + P +
Sbjct: 48 GEVRVNKGRVKPEYKLQAGDIVR-----VPPV-----RLPERDEPAP---VAPGL--LQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + Y D A++V+NKP + + G + ++AL L D E +LVHRLDR++
Sbjct: 93 LEAAIVYEDKALIVMNKPAGIAVHGGSGLSFGVIEALRQ--LRPDAKE-LELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + + + + +RY ALV G + ++
Sbjct: 150 SGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGHWPTSKKQVN 194
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ + G +EA+T +RVL + +E RP+T R HQ+R
Sbjct: 195 APLLKSNLRSG--ERMVEVNDEG----KEALTLFRVLRRFGEFATIVEARPITGRTHQIR 248
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 249 VHTLHA-GHMIAGDSKYG 265
>gi|421504524|ref|ZP_15951465.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina DLHK]
gi|400344482|gb|EJO92851.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina DLHK]
Length = 317
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ P+ + E + + G L +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----VPPLRLAE---RDEPEPVAQGLL-------ER 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G ++ + A L D + +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLNYGVIE-AFRQLRPDAKD-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G + +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGHWATAKKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
+APL K L G ER++ G +EA+T +RVL + + +E +P+T R HQ+
Sbjct: 194 NAPLQKSNLRSG--ERMVEVDGEG----KEALTLFRVLRRFGDFATLVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHAKHA-GHCIAGDSKYG 265
>gi|410102929|ref|ZP_11297854.1| RluA family pseudouridine synthase [Parabacteroides sp. D25]
gi|409238056|gb|EKN30851.1| RluA family pseudouridine synthase [Parabacteroides sp. D25]
Length = 548
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 99/206 (48%), Gaps = 35/206 (16%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHL-PVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ Y D +L++NKP VP KG V++ + L Y GP +VHRLD +S
Sbjct: 341 ILYEDDYLLIVNKPAGMLSVPGKGDADSVYHRLRIL------YPDATGPIIVHRLDMATS 394
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL +TKE+ L F K++++ K RY AL+ G + +G I
Sbjct: 395 GLLLAAKTKEAHQNLQAQF----KNRTIQK-----------RYIALLEGEVPQDEGEIRL 439
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD R I+++ G + A T YRVL +G + I P T R HQLRV
Sbjct: 440 PLCPDPLD---RPRQIVSEEFG----KPAFTRYRVLE-RTSGKTLIAFYPQTGRTHQLRV 491
Query: 381 HCAEALG--TPIVGDYKYGWFVHRRW 404
H A LG PI+GD YG R +
Sbjct: 492 HAAHPLGLHCPILGDELYGRKAERLY 517
>gi|421076497|ref|ZP_15537482.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
gi|392525409|gb|EIW48550.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
Length = 294
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 36/222 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
+ Y D +L+++KP + + H + L A + Y + +G VHRLDR +S
Sbjct: 77 IAYEDDTLLIIDKPAGMLVHPTTSEHTA--TLGNAIMHYFHTQGRSHAFHPVHRLDRNTS 134
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL+L+ + LL++ N +K++++ +Y AL G K +G I A
Sbjct: 135 GLVLIAKYPHIQHLLSF-----NGAKNINR-----------QYIALTTGIIKPAEGTIDA 178
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
P+++ D +RII + Q A T Y+VL P+IN S ++L LT R HQ+RV
Sbjct: 179 PIAR--HPDSIIQRIIDPK------GQHATTCYQVLRPLIN-ASIVQLTLLTGRTHQIRV 229
Query: 381 HCAEALGTPIVGDYKYGW---FVHRRWKQMPRVDI-EPTSGK 418
H + LG PI+GD YG + R+ R+ P SGK
Sbjct: 230 HLSH-LGHPIIGDDLYGGSRELISRQALHAARLYFAHPLSGK 270
>gi|154496189|ref|ZP_02034885.1| hypothetical protein BACCAP_00473 [Bacteroides capillosus ATCC
29799]
gi|150274744|gb|EDN01808.1| pseudouridine synthase, RluA family [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 304
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 135/270 (50%), Gaps = 45/270 (16%)
Query: 142 DSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLN---PNADEI 198
D F+ + Q+ + + +++E GA V++ + K Y T L P+ E+
Sbjct: 16 DQFLSR-QLPQLSRSAAQKLLEEGA-----VTLKGLPVKKNYKTAEGDELVLSLPDPVEV 69
Query: 199 DYLRRL----VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDAL---AAAALSYDYNE- 247
D + + V Y D ++V+NKP + P GH P ++AL +LS E
Sbjct: 70 DVVPQDIPLDVVYEDGDVIVINKPVGMVVHPAAGH-PDGTLVNALLYHCGKSLSGINGEL 128
Query: 248 GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
P +VHR+DR++SGL++ ++ F+ + +L++ D ++Y+ Y A+
Sbjct: 129 RPGIVHRIDRDTSGLIIAAKSD---------FAHL----ALAEQLQD--HSLYREYEAVA 173
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE 367
+G KE +G + AP+++ T+R +A N +EA+T Y VL +GC+ ++
Sbjct: 174 VGGFKEDEGTVRAPIAR-----HPTDRKKMAVN--FLQGREAVTHYTVL-ERFSGCTHLQ 225
Query: 368 LRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
R T R HQ+RVH A +G P++GD YG
Sbjct: 226 CRLETGRTHQIRVHMAH-IGHPLLGDTVYG 254
>gi|255014662|ref|ZP_05286788.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
2_1_7]
Length = 549
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 99/206 (48%), Gaps = 35/206 (16%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHL-PVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ Y D +L++NKP VP KG V++ + L Y GP +VHRLD +S
Sbjct: 342 ILYEDDYLLIVNKPAGMLSVPGKGDADSVYHRLRIL------YPDATGPIIVHRLDMATS 395
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL +TKE+ L F K++++ K RY AL+ G + +G I
Sbjct: 396 GLLLAAKTKEAHQNLQAQF----KNRTIQK-----------RYIALLEGEVPQDEGEIRL 440
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD R I+++ G + A T YRVL +G + I P T R HQLRV
Sbjct: 441 PLCPDPLD---RPRQIVSEEFG----KPAFTRYRVLE-RTSGKTLIAFYPQTGRTHQLRV 492
Query: 381 HCAEALG--TPIVGDYKYGWFVHRRW 404
H A LG PI+GD YG R +
Sbjct: 493 HAAHPLGLHCPILGDELYGRKAERLY 518
>gi|66044884|ref|YP_234725.1| pseudouridine synthase RluD [Pseudomonas syringae pv. syringae
B728a]
gi|289671959|ref|ZP_06492849.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. syringae FF5]
gi|422619792|ref|ZP_16688479.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. japonica str. M301072]
gi|422640286|ref|ZP_16703713.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae Cit 7]
gi|422664801|ref|ZP_16724674.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|422676158|ref|ZP_16735492.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. aceris str. M302273]
gi|440719695|ref|ZP_20900119.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae BRIP34876]
gi|440728803|ref|ZP_20909005.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae BRIP34881]
gi|440741938|ref|ZP_20921269.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae BRIP39023]
gi|443644833|ref|ZP_21128683.1| Ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. syringae B64]
gi|63255591|gb|AAY36687.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. syringae B728a]
gi|330900159|gb|EGH31578.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. japonica str. M301072]
gi|330952677|gb|EGH52937.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae Cit 7]
gi|330973866|gb|EGH73932.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. aceris str. M302273]
gi|330975220|gb|EGH75286.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|440360586|gb|ELP97849.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae BRIP34881]
gi|440367341|gb|ELQ04406.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae BRIP34876]
gi|440378275|gb|ELQ14900.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae BRIP39023]
gi|443284850|gb|ELS43855.1| Ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. syringae B64]
Length = 318
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 124/259 (47%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQA-----LLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G+ +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATALKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ+
Sbjct: 194 RAPLMKSNLRSG--ERMVEVNEEG----KEALTIFKVLRRFGDFATMVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHTLHA-GHAIAGDTKYG 265
>gi|197303693|ref|ZP_03168730.1| hypothetical protein RUMLAC_02422 [Ruminococcus lactaris ATCC
29176]
gi|197297213|gb|EDY31776.1| pseudouridine synthase, RluA family [Ruminococcus lactaris ATCC
29176]
Length = 295
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 34/236 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLV----HRLDRESS 260
+ Y D +LV+NKP +P+ H ++N ++LA A + Y +G + +RLDR++S
Sbjct: 83 IIYEDDDLLVVNKPAGMPI--HPSLNNYKNSLANALMYYYKEQGKPFIFRCTNRLDRDTS 140
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL ++ + S S+L+++ +++ Y A+V G+ G I+A
Sbjct: 141 GLTVIAKHLVSSSILSFM---------------AVRHEIHREYLAIVRGAVSPASGTINA 185
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL+ +T I+ + E + A+T Y+VL N S + L T R HQ+RV
Sbjct: 186 PLA-------RTGSSIIERKVDFEHGEHAVTHYKVLKEQ-NQHSLVSLILETGRTHQIRV 237
Query: 381 HCAEALGTPIVGDYKYG---WFVHRRWKQMPRVD-IEPTSGKPYKLRRPDGLDVQK 432
H + LG P+VGDY Y +++R+ ++ I P +G+ P D++K
Sbjct: 238 HL-QYLGHPLVGDYLYNPDMEYINRQALHSWKLSFIHPITGEAMHFEAPLPEDMRK 292
>gi|401414109|ref|XP_003871553.1| pseudouridylate synthase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487770|emb|CBZ23011.1| pseudouridylate synthase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 414
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 27/213 (12%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-----NSMDALAAAALSYD 244
T + +A + + +V +++ ++V+NKP VP+ +P H N D L A Y
Sbjct: 153 TFHLSAKAREMAQEMVLFKNEHVVVINKPSGVPI---MPTHDPLAMNITDLLPA--WRYT 207
Query: 245 YNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYW 304
+ P + H LD E+SG +++ R+ + +L +F S+ YW
Sbjct: 208 NTQKPIICHNLDTETSGCVVLARSSNAHRMLGRMFVKRVVPNSV--------------YW 253
Query: 305 ALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCS 364
+G P G I + G+ +I+A+ + S+ + E+ V + S
Sbjct: 254 GFAVGKPPVNFGRIRMHFE---VQKGQGGDVIVARPTPTADSKVGIAEFVVNASALEFGS 310
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+I PLT R+HQ R+ A AL P++GD KYG
Sbjct: 311 FISFYPLTTRRHQERIMAAHALRAPLLGDAKYG 343
>gi|424066714|ref|ZP_17804177.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|408002003|gb|EKG42273.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
Length = 318
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 124/259 (47%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQA-----LLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G+ +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATALKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ+
Sbjct: 194 RAPLMKSNLRSG--ERMVEVNEEG----KEALTIFKVLRRFGDFATMVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHTLHA-GHAIAGDTKYG 265
>gi|187932847|ref|YP_001886621.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
gi|187721000|gb|ACD22221.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
Length = 302
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 39/223 (17%)
Query: 185 TIPSG-TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY 243
T+P TL +++ID + Y D ++V+NK + + P + + AL +
Sbjct: 64 TMPEAETLKVESEDIDLD---ILYEDKDVIVVNKEQGMVVH---PAPGNYNGTLVNALLF 117
Query: 244 DYNE--------GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDA 295
+ P +VHR+D+++SG+L++ + ES + L D
Sbjct: 118 HCTDLSSINGVIRPGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKD-------------- 163
Query: 296 CEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRV 355
+M + Y+ALV G K GII PL + K R+ +A E + A+T Y V
Sbjct: 164 -HSMNREYYALVEGRFKNDSGIIDKPLGR-----DKKNRLKIAIT---EDGRRAITHYEV 214
Query: 356 LGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGW 398
L GC+ I+ + T R HQ+RVH A +LG P+VGD YG+
Sbjct: 215 LERYDTGCTLIKCKLETGRTHQIRVHMA-SLGHPLVGDPLYGF 256
>gi|421616810|ref|ZP_16057812.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri KOS6]
gi|421617298|ref|ZP_16058292.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri KOS6]
gi|409780796|gb|EKN60413.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri KOS6]
gi|409781291|gb|EKN60893.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri KOS6]
Length = 537
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 105/203 (51%), Gaps = 30/203 (14%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLD 256
++ L + + + D A++VLNKP + + G + + ++AL L D E +LVHRLD
Sbjct: 90 LERLEKAIVHEDKALIVLNKPAGIAVHGGSGLSYGVIEALRQ--LRPDARE-LELVHRLD 146
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEK 314
R++SGLL+ V K +S+ + + A + + +RY ALV G +
Sbjct: 147 RDTSGLLM-----------------VAKKRSMLRHLHQALRGDGVDKRYMALVRGRWETS 189
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+ + APL K L G ER++ G +EA+T +RVL + + +E +P+T R
Sbjct: 190 KKQVSAPLLKNTLRSG--ERMVEVTEDG----KEALTLFRVLRRFGDFATLVEAKPVTGR 243
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A G I GD KYG
Sbjct: 244 THQIRVHARHA-GHSIAGDSKYG 265
>gi|294675292|ref|YP_003575908.1| ribosomal large subunit pseudouridine synthase A [Prevotella
ruminicola 23]
gi|294472360|gb|ADE81749.1| ribosomal large subunit pseudouridine synthase A [Prevotella
ruminicola 23]
Length = 459
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 111/245 (45%), Gaps = 37/245 (15%)
Query: 191 LNPNADEIDYLRRLVK--YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG 248
++P+ + +L + ++ Y D AI + KP G L V D + A + +
Sbjct: 234 VDPDPETSGFLHQGIEIVYEDEAIAAVYKP-----SGMLSVPGKTDDYSVATWAKERWAA 288
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
L HRLD +SG++L+ +T E+ L F A + ++Y A+V
Sbjct: 289 SMLPHRLDLMTSGIMLVAKTPEAYHHLQNQF---------------AARTIKKKYLAVVE 333
Query: 309 GSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVL----GPMIN-GC 363
G ++ G+I PLS ++ Q E + A+TEYRVL P +
Sbjct: 334 GEIQQPHGVIDLPLSSDPMNRP-------CQIVDYEHGKRAITEYRVLDRQQSPTTHRPV 386
Query: 364 SWIELRPLTCRKHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQMPRVDIE-PTSGKPY 420
+ + L P T R HQLR+HCA E LG PI+GD YG R + Q + E PT+GK
Sbjct: 387 TLLALYPHTGRTHQLRMHCAHQEGLGCPILGDELYGHKADRLYLQAESIAFEHPTTGKRL 446
Query: 421 KLRRP 425
L P
Sbjct: 447 HLFCP 451
>gi|424071363|ref|ZP_17808789.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|407998972|gb|EKG39366.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
Length = 318
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 124/259 (47%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQA-----LLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G+ +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWAAALKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ+
Sbjct: 194 RAPLMKSNLRSG--ERMVEVNEEG----KEALTIFKVLRRFGDFATMVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHTLHA-GHAIAGDTKYG 265
>gi|121601705|ref|YP_988611.1| RluA family pseudouridine synthase [Bartonella bacilliformis KC583]
gi|421760423|ref|ZP_16197240.1| ribosomal large subunit pseudouridine synthase D [Bartonella
bacilliformis INS]
gi|120613882|gb|ABM44483.1| pseudouridine synthase, RluA family [Bartonella bacilliformis
KC583]
gi|411175707|gb|EKS45732.1| ribosomal large subunit pseudouridine synthase D [Bartonella
bacilliformis INS]
Length = 336
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 131/298 (43%), Gaps = 61/298 (20%)
Query: 113 KYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPV 172
K+Y +E+ S +Q+ +G ++++ G E P KIK+N+ +E
Sbjct: 21 KHYQNELSRSRLQTLIREGYLKID----GKLVTE-----PKTKIKSNQTIEL-------- 63
Query: 173 SMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNS 232
TIP TLN E + + + + D I+V+NKP + + P H +
Sbjct: 64 ------------TIP--TLNNAYPEGEAIPLHILFEDDHIIVVNKPAGLVVH---PGHGN 106
Query: 233 MDALAAAALSYDYNEG---------PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVN 283
AL Y + P +VHRLD+ +SG++++ + + L+ FSD
Sbjct: 107 WTGTLVNALIYHCGDSLSGIGGVRRPGIVHRLDKNTSGVIVVAKNDLAHKGLSAQFSDHG 166
Query: 284 KSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERI----ILAQ 339
++ L + RY AL+ GSP G+I A L + D K I I A+
Sbjct: 167 RTGVLDR-----------RYHALIWGSPNRNIGVITASLGRARYDRTKQAVIHSHNIYAR 215
Query: 340 NSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
++ S + +Y+ I S +E R T R HQ+RVH A +G P+VGD YG
Sbjct: 216 HAVTHFS--VIEKYQTCADKIPFASLLECRLETGRTHQIRVHMAH-IGHPLVGDTVYG 270
>gi|113970739|ref|YP_734532.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-4]
gi|114047966|ref|YP_738516.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-7]
gi|113885423|gb|ABI39475.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-4]
gi|113889408|gb|ABI43459.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
MR-7]
Length = 329
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 40/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP K++ +V+ PV M E + T PS L+ ++
Sbjct: 57 GEVRVNKKRIKPEYKLQIGDVVR-----VPPVRMAE----QDNRTAPSANLS----KVSQ 103
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + + D+ ++VLNKP + + G V + ++AL + + E LVHRLD+++
Sbjct: 104 LEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLE---LVHRLDKDT 160
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG+LL+ + + S L L + + K M + Y ALV G + ++
Sbjct: 161 SGVLLVAKKR---SALKHLHDQLRQKK------------MQKDYLALVKGEWSAQDKVVK 205
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
PL K+ L G ERI+ G + + T ++++ GC+ ++ P+T R HQ+R
Sbjct: 206 QPLLKLTLKSG--ERIVRVNGEG----KPSETRFKIV-QRYQGCTLVQASPVTGRTHQIR 258
Query: 380 VHCAEALGTPIVGDYKY 396
VHC + +G PI D KY
Sbjct: 259 VHC-QYMGHPIACDEKY 274
>gi|73954899|ref|XP_546413.2| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Canis lupus familiaris]
Length = 404
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 139/302 (46%), Gaps = 65/302 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R V ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 96 LSRGVLHQDKDLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLD 154
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ KE + F +++ ++K +YWA+ + P G
Sbjct: 155 KETTGVMVLAWEKEVAHQVQEFF----RTRQVAK-----------KYWAITVRVPVPSAG 199
Query: 317 IIHAPLSKVL-----------------LDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+++ +D+GK R+ +N+ + A+T+Y VL
Sbjct: 200 VVDIPITEKAVQGQQQHYKMTLSPDYRMDNGKMVRVRSNRNAHI-----AVTQYHVLSST 254
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 255 LSS-ALVELQPITGIKHQLRVHLSFGLNCPILGDHKYS-----DWNKLAPQKL--SLGTL 306
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMPSHMK 479
KL GL K L LHLH R+L + P L S+ + L V +P
Sbjct: 307 KKL----GLQQTKARHLP----LHLHARQL----ILPALGSRKEE---LSLVCKLPRFFV 351
Query: 480 IS 481
+S
Sbjct: 352 LS 353
>gi|408673040|ref|YP_006872788.1| pseudouridine synthase [Emticicia oligotrophica DSM 17448]
gi|387854664|gb|AFK02761.1| pseudouridine synthase [Emticicia oligotrophica DSM 17448]
Length = 242
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 30/200 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
V Y D+ I+++NK + ++G ++ + YN+ + VHRLDR S
Sbjct: 8 VVYEDNHIIIVNKAQGILVQGDSTGDKTLSDYVKEYIKEKYNKPGDVFLGTVHRLDRPVS 67
Query: 261 GLLLMGRTKESVSLLTWLF--SDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
GL++ RT +++ + +F DV K+ YWA+V P++K
Sbjct: 68 GLVVFARTSKALERMNEIFRKRDVQKT-----------------YWAVVGKKPEKKS--- 107
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
A L+ L+ D +T+ + A + + SQ+A YR LG + N +E+ P+T R HQ+
Sbjct: 108 -AKLTNWLVKD-ETKNTVKAYDEEVPNSQKAELTYRYLGEL-NHYHLLEINPITGRPHQI 164
Query: 379 RVHCAEALGTPIVGDYKYGW 398
RV A+ +G PI GD KYG+
Sbjct: 165 RVQLAK-MGCPIRGDVKYGY 183
>gi|355641291|ref|ZP_09052176.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
2_1_26]
gi|354830889|gb|EHF14921.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
2_1_26]
Length = 318
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D A++V+NKP + + G V + + L D + +LVHRLDR++SGLL+
Sbjct: 97 IVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQ-LRPDAKD-IELVHRLDRDTSGLLM 154
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + + S+L L + K + K RY ALV G + + APL K
Sbjct: 155 IAKKR---SMLRHLHEALRGEKIVDK-----------RYHALVRGHWPAGKKNVRAPLLK 200
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L G ER++ G ++A+TE+RVL + + +E RP+T R HQ+RVH
Sbjct: 201 NNLRSG--ERMVEVNVEG----KDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 385 ALGTPIVGDYKYG 397
A G I GD KYG
Sbjct: 255 A-GHAIAGDPKYG 266
>gi|260833883|ref|XP_002611941.1| hypothetical protein BRAFLDRAFT_126415 [Branchiostoma floridae]
gi|229297314|gb|EEN67950.1| hypothetical protein BRAFLDRAFT_126415 [Branchiostoma floridae]
Length = 335
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 104/214 (48%), Gaps = 38/214 (17%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGH----LPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L++ + Y + I+ + KP VP+ G + + +S+ L A + + LVHRLD
Sbjct: 67 LKKSLLYDEGDIVAIEKPYGVPVHGGPGMGVSIADSLPLLQQALKT----DRLYLVHRLD 122
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++L+ +T + L LF + ++YW L +G P ++G
Sbjct: 123 KETTGVMLLAKTDDMARQLHSLFR---------------LRKVIKKYWVLTMGVPSHEEG 167
Query: 317 IIHAPLSKVLL--------------DDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
++ P+ ++ + + + ++I+ + +Q A+T +RVL
Sbjct: 168 VVDIPIKELEVTAQGRPHHRMVCVPEYSEETKLIVKKKRKSSDAQIAITNFRVLDS-CGS 226
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
C+ +E +P T KHQ+R H + LG PI+GD+KY
Sbjct: 227 CALVECQPETGVKHQIRSHLSYGLGCPILGDHKY 260
>gi|421179864|ref|ZP_15637438.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa E2]
gi|404546442|gb|EKA55496.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa E2]
Length = 318
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D A++V+NKP + + G V + + L D + +LVHRLDR++SGLL+
Sbjct: 97 IVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQ-LRPDAKD-IELVHRLDRDTSGLLM 154
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + + S+L L + K + K RY ALV G + + APL K
Sbjct: 155 IAKKR---SMLRHLHEALRGEKIVDK-----------RYHALVRGHWPAGKKNVRAPLLK 200
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L G ER++ G ++A+TE+RVL + + +E RP+T R HQ+RVH
Sbjct: 201 NNLRSG--ERMVEVNVEG----KDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 385 ALGTPIVGDYKYG 397
A G I GD KYG
Sbjct: 255 A-GHAIAGDPKYG 266
>gi|449144782|ref|ZP_21775594.1| Pseudouridylate synthase, 23S RNA-specific [Vibrio mimicus CAIM
602]
gi|449079567|gb|EMB50489.1| Pseudouridylate synthase, 23S RNA-specific [Vibrio mimicus CAIM
602]
Length = 559
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 102/209 (48%), Gaps = 33/209 (15%)
Query: 192 NPNAD-EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
NP AD EI + Y+D AI+V+NKP + + VH+S+ L + EG
Sbjct: 349 NPAADKEIS-----IVYQDEAIVVVNKPAEFLSVPGVHVHDSV--LTRLQAQFSEAEGVF 401
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
+HRLD +SGLL+ T+ + +K L K + A+ +RY A++ G+
Sbjct: 402 ALHRLDMSTSGLLVFALTRRA-------------NKHLQKQF--ITRAVQKRYVAMIEGT 446
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ QG I PL L DD +++ Q + A+T + + + G + + L P
Sbjct: 447 LTDAQGEIELPLCGDL-DDRPRQKVCWQQG------KPALTHWETVA-VEQGRTRVYLYP 498
Query: 371 LTCRKHQLRVHCAEALG--TPIVGDYKYG 397
T R HQLRVHCA LG PIVGD YG
Sbjct: 499 HTGRTHQLRVHCAHHLGLNCPIVGDDLYG 527
>gi|163751081|ref|ZP_02158312.1| RluC [Shewanella benthica KT99]
gi|161329242|gb|EDQ00241.1| RluC [Shewanella benthica KT99]
Length = 319
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDT-IPSGTLNPNADEID 199
G+ V + ++KP K++ +++ PV R+S + D PS L ++
Sbjct: 47 GEVRVNKKRIKPEYKLQDGDIVR-----IPPV-----RVSDKSDRPGPSAKLT----KVS 92
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D I+VLNKP + + G V ++A+ A + + E LVHRLD++
Sbjct: 93 QLEDRIVFEDKFIIVLNKPSGIAVHGGSGVDFGVIEAMRALRPTQKFLE---LVHRLDKD 149
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G+ + + +I
Sbjct: 150 TSGVLLIAKKR---SALRHLHDQLRFKK------------MQKDYQALVKGTWQARDKVI 194
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K+ L G ERI+ G +E T +++L G + ++ P+T R HQ+
Sbjct: 195 KAPLLKLTLKSG--ERIVRVNQEG----KECETRFKIL-QRYQGATLVQASPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 248 RVHCQYA-GHPIACDDKY 264
>gi|15598171|ref|NP_251665.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PAO1]
gi|116050977|ref|YP_790198.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218890827|ref|YP_002439691.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa LESB58]
gi|254235949|ref|ZP_04929272.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa C3719]
gi|296388532|ref|ZP_06878007.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PAb1]
gi|386058052|ref|YP_005974574.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa M18]
gi|392983298|ref|YP_006481885.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa DK2]
gi|416860809|ref|ZP_11914412.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 138244]
gi|416876659|ref|ZP_11919350.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 152504]
gi|418586458|ref|ZP_13150500.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa MPAO1/P1]
gi|418591013|ref|ZP_13154917.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa MPAO1/P2]
gi|419756446|ref|ZP_14282796.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PADK2_CF510]
gi|420139199|ref|ZP_14647056.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa CIG1]
gi|421153583|ref|ZP_15613124.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 14886]
gi|421159715|ref|ZP_15618827.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 25324]
gi|421166877|ref|ZP_15625098.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 700888]
gi|421173827|ref|ZP_15631564.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa CI27]
gi|421517504|ref|ZP_15964178.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PAO579]
gi|424942342|ref|ZP_18358105.1| ribosomal large subunit pseudouridine synthase c [Pseudomonas
aeruginosa NCMG1179]
gi|451984306|ref|ZP_21932562.1| 23S rRNA pseudouridylate synthase [Pseudomonas aeruginosa 18A]
gi|34395830|sp|Q9HZM9.1|RLUC_PSEAE RecName: Full=Ribosomal large subunit pseudouridine synthase C;
AltName: Full=23S rRNA pseudouridine(955/2504/2580)
synthase; AltName: Full=rRNA pseudouridylate synthase C;
AltName: Full=rRNA-uridine isomerase C
gi|9949074|gb|AAG06363.1|AE004723_7 ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PAO1]
gi|115586198|gb|ABJ12213.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126167880|gb|EAZ53391.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa C3719]
gi|218771050|emb|CAW26815.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa LESB58]
gi|334837283|gb|EGM16052.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 138244]
gi|334840497|gb|EGM19149.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 152504]
gi|346058788|dbj|GAA18671.1| ribosomal large subunit pseudouridine synthase c [Pseudomonas
aeruginosa NCMG1179]
gi|347304358|gb|AEO74472.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa M18]
gi|375043201|gb|EHS35832.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa MPAO1/P1]
gi|375050254|gb|EHS42737.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa MPAO1/P2]
gi|384397177|gb|EIE43590.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PADK2_CF510]
gi|392318803|gb|AFM64183.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa DK2]
gi|403248069|gb|EJY61668.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa CIG1]
gi|404346986|gb|EJZ73335.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PAO579]
gi|404523425|gb|EKA33848.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 14886]
gi|404535351|gb|EKA45052.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa CI27]
gi|404536575|gb|EKA46212.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 700888]
gi|404546365|gb|EKA55420.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa ATCC 25324]
gi|451758000|emb|CCQ85085.1| 23S rRNA pseudouridylate synthase [Pseudomonas aeruginosa 18A]
gi|453043707|gb|EME91435.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa PA21_ST175]
Length = 318
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D A++V+NKP + + G V + + L D + +LVHRLDR++SGLL+
Sbjct: 97 IVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQ-LRPDAKD-IELVHRLDRDTSGLLM 154
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + + S+L L + K + K RY ALV G + + APL K
Sbjct: 155 IAKKR---SMLRHLHEALRGEKIVDK-----------RYHALVRGHWPAGKKNVRAPLLK 200
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L G ER++ G ++A+TE+RVL + + +E RP+T R HQ+RVH
Sbjct: 201 NNLRSG--ERMVEVNVEG----KDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 385 ALGTPIVGDYKYG 397
A G I GD KYG
Sbjct: 255 A-GHAIAGDPKYG 266
>gi|262164736|ref|ZP_06032474.1| pseudouridylate synthase LSU rRNA-specific [Vibrio mimicus VM223]
gi|262027116|gb|EEY45783.1| pseudouridylate synthase LSU rRNA-specific [Vibrio mimicus VM223]
Length = 559
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 103/209 (49%), Gaps = 33/209 (15%)
Query: 192 NPNAD-EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
NP AD EI + Y+D AI+V+NKP + + VH+S+ L + EG
Sbjct: 349 NPAADKEIS-----IVYQDEAIVVVNKPAEFLSVPGVHVHDSV--LTRLQAQFSEAEGVF 401
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
+HRLD +SGLL+ T+ + +K L K + A+ +RY A++ G+
Sbjct: 402 ALHRLDMSTSGLLVFALTRRA-------------NKHLQKQF--ITRAVQKRYVAMLDGT 446
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
++QG I PL L DD +++ Q + A+T + + + G + + L P
Sbjct: 447 LADEQGEIELPLCGDL-DDRPRQKVCWQQG------KPALTHWETVA-VEQGRTRVYLYP 498
Query: 371 LTCRKHQLRVHCAEALG--TPIVGDYKYG 397
T R HQLRVHCA LG PIVGD YG
Sbjct: 499 HTGRTHQLRVHCAHHLGLNCPIVGDDLYG 527
>gi|49083776|gb|AAT51141.1| PA2975, partial [synthetic construct]
Length = 319
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D A++V+NKP + + G V + + L D + +LVHRLDR++SGLL+
Sbjct: 97 IVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQ-LRPDAKD-IELVHRLDRDTSGLLM 154
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + + S+L L + K + K RY ALV G + + APL K
Sbjct: 155 IAKKR---SMLRHLHEALRGEKIVDK-----------RYHALVRGHWPAGKKNVRAPLLK 200
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L G ER++ G ++A+TE+RVL + + +E RP+T R HQ+RVH
Sbjct: 201 NNLRSG--ERMVEVNVEG----KDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 385 ALGTPIVGDYKYG 397
A G I GD KYG
Sbjct: 255 A-GHAIAGDPKYG 266
>gi|423337719|ref|ZP_17315462.1| RluA family pseudouridine synthase [Parabacteroides distasonis
CL09T03C24]
gi|409236179|gb|EKN28987.1| RluA family pseudouridine synthase [Parabacteroides distasonis
CL09T03C24]
Length = 545
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 99/206 (48%), Gaps = 35/206 (16%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHL-PVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ Y D +L++NKP VP KG V++ + L Y GP +VHRLD +S
Sbjct: 341 ILYEDDYLLIVNKPAGMLSVPGKGDADSVYHRLHIL------YPDATGPIIVHRLDMATS 394
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL +TKE+ L F K++++ K RY AL+ G + +G I
Sbjct: 395 GLLLAAKTKEAHQNLQAQF----KNRTIQK-----------RYIALLEGEVPQDEGEIRL 439
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD R I+++ G + A T YRVL +G + I P T R HQLRV
Sbjct: 440 PLCPDPLD---RPRQIVSEEFG----KPAFTRYRVL-ERTSGKTLIAFYPQTGRTHQLRV 491
Query: 381 HCAEALG--TPIVGDYKYGWFVHRRW 404
H A LG PI+GD YG R +
Sbjct: 492 HAAHPLGLHCPILGDELYGRKAERLY 517
>gi|218202408|gb|EEC84835.1| hypothetical protein OsI_31929 [Oryza sativa Indica Group]
Length = 154
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 50/64 (78%), Gaps = 3/64 (4%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
LRR V ++DSAILVLNKP KVP+KG+LPVHNSMD LAAAAL Y EG KLVH R+ +
Sbjct: 55 LRRPVIHKDSAILVLNKPTKVPMKGNLPVHNSMDVLAAAALLYGNEEGSKLVH---RQRA 111
Query: 261 GLLL 264
LLL
Sbjct: 112 SLLL 115
>gi|410092613|ref|ZP_11289135.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
viridiflava UASWS0038]
gi|409760042|gb|EKN45210.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
viridiflava UASWS0038]
Length = 319
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 124/259 (47%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----IPPV-----RVPERDEPVPVAQAL-----LQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A L D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G+ +
Sbjct: 151 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATSIKQV 193
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ+
Sbjct: 194 RAPLLKSNLRSG--ERMVEVNEEG----KEALTIFKVLRRFGDFATMVEAKPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 248 RVHTLHA-GHAIAGDTKYG 265
>gi|107102524|ref|ZP_01366442.1| hypothetical protein PaerPA_01003588 [Pseudomonas aeruginosa PACS2]
Length = 318
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D A++V+NKP + + G V + + L D + +LVHRLDR++SGLL+
Sbjct: 97 IVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQ-LRPDAKD-IELVHRLDRDTSGLLM 154
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + + S+L L + K + K RY ALV G + + APL K
Sbjct: 155 IAKKR---SMLRHLHEALRGEKIVDK-----------RYHALVRGHWPAGKKNVRAPLLK 200
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L G ER++ G ++A+TE+RVL + + +E RP+T R HQ+RVH
Sbjct: 201 NNLRSG--ERMVEVNVEG----KDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 385 ALGTPIVGDYKYG 397
A G I GD KYG
Sbjct: 255 A-GHAIAGDPKYG 266
>gi|296446414|ref|ZP_06888358.1| pseudouridine synthase [Methylosinus trichosporium OB3b]
gi|296256049|gb|EFH03132.1| pseudouridine synthase [Methylosinus trichosporium OB3b]
Length = 229
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 37/205 (18%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L RL+ YRD +LV++KP +P+ +G + + DAL + P L HRLD
Sbjct: 2 LSRLL-YRDGLMLVVDKPAGLPVHRGPRGGDNLEDHFDAL-----RFGLPRPPALAHRLD 55
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG L++GR ++++ L LF D K+ YWA+V G+P + G
Sbjct: 56 RDTSGCLVLGRHRKALERLGKLFRDGRIEKT---------------YWAVVEGAPADDAG 100
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVL--GPMING--CSWIELRPLT 372
I L ++ D + GL A T +R L G G +++EL+P T
Sbjct: 101 EIDMALGRL---DSTRGWWMRPDPLGLPAQ----THWRALARGQDTEGRDIAFLELKPRT 153
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYG 397
R HQLRVH +A+G PI+GD YG
Sbjct: 154 GRTHQLRVHM-QAMGWPILGDPVYG 177
>gi|258624340|ref|ZP_05719289.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258583491|gb|EEW08291.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 559
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 103/209 (49%), Gaps = 33/209 (15%)
Query: 192 NPNAD-EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
NP AD EI + Y+D AI+V+NKP + + VH+S+ L + EG
Sbjct: 349 NPAADKEIS-----IVYQDEAIVVVNKPAEFLSVPGVHVHDSV--LTRLQAQFSEAEGVF 401
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
+HRLD +SGLL+ T+ + +K L K + A+ +RY A++ G+
Sbjct: 402 ALHRLDMSTSGLLVFALTRRA-------------NKHLQKQF--ITRAVQKRYVAMLDGT 446
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
++QG I PL L DD +++ Q + A+T + + + G + + L P
Sbjct: 447 LADEQGEIELPLCGDL-DDRPRQKVCWQQG------KPALTHWETVA-VEQGRTRVYLYP 498
Query: 371 LTCRKHQLRVHCAEALG--TPIVGDYKYG 397
T R HQLRVHCA LG PIVGD YG
Sbjct: 499 HTGRTHQLRVHCAHHLGLNCPIVGDDLYG 527
>gi|406992112|gb|EKE11519.1| hypothetical protein ACD_15C00066G0014 [uncultured bacterium]
Length = 315
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 37/205 (18%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY------NEG-------PKL 251
V Y++ +++NKP L+ H P + + AL D+ N+G P +
Sbjct: 83 VIYQNKDFIIVNKPA--GLQVH-PSDSEKENTLVNALIVDFPEIMDVNDGSQDSWMRPGI 139
Query: 252 VHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSP 311
VHRLD+++SG++++ + K++ L F A + + Y ALV G+
Sbjct: 140 VHRLDKDTSGIMVVAKNKKTFYELKKKF---------------ANREIRKNYVALVYGNL 184
Query: 312 KEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPL 371
K++QG + P+++ K ++I + G+ ++ A+TEY ++ ++E+ P
Sbjct: 185 KDRQGTVDKPIARAA--SFKKQKIAEGRTKGV--ARTAVTEYNLI-ERYEEFDFVEVFPK 239
Query: 372 TCRKHQLRVHCAEALGTPIVGDYKY 396
T R HQ+RVH A +LG PIVGD KY
Sbjct: 240 TGRMHQIRVHLA-SLGNPIVGDMKY 263
>gi|359781624|ref|ZP_09284848.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
psychrotolerans L19]
gi|359370688|gb|EHK71255.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
psychrotolerans L19]
Length = 317
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 34/205 (16%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP-----KLV 252
++ L + + D A++V+NKP + + G L+ + P +LV
Sbjct: 90 LERLEDSIVHEDKALIVINKPAGIAVHGG-------SGLSGGVIEVFRQLRPDARDIELV 142
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK 312
HRLDR++SGLL++ + + S+L +L + + + +RY ALV G
Sbjct: 143 HRLDRDTSGLLMIAKKR---SMLRFLHEALR------------GDGVDKRYHALVRGHWP 187
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
+ I APL K L G ER++ + G +EA+TE+RVL + +E RP+T
Sbjct: 188 AAKKKISAPLLKNTLRSG--ERMVEVNDEG----KEALTEFRVLRRYGEFATLVEARPVT 241
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+RVH A G I GD KYG
Sbjct: 242 GRTHQIRVHARHA-GHAIAGDPKYG 265
>gi|168212841|ref|ZP_02638466.1| pseudouridine synthase, RluA family [Clostridium perfringens CPE
str. F4969]
gi|422346787|ref|ZP_16427701.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|170715523|gb|EDT27705.1| pseudouridine synthase, RluA family [Clostridium perfringens CPE
str. F4969]
gi|373226332|gb|EHP48659.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
Length = 298
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 131/278 (47%), Gaps = 54/278 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+K N V++ G I + +S E S + P +I+ + Y DS ILVL
Sbjct: 48 VKMNYVVKTGEEIKIELSKKE-----------SQNIEPEKMDIE-----IVYEDSDILVL 91
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP-----KLVHRLDRESSGLLLMGRTKE 270
NK P + + P + + A + Y + E +LV RLD +SGL+++G+ +
Sbjct: 92 NKKPFMVVH---PTRSHPNGTLANGILYYFKESNQDCIVRLVSRLDMNTSGLIIIGKNQY 148
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
+ +L+ N+ K+ + +RY A+V G+ +EK+G I+ P+ + D
Sbjct: 149 AHMVLS------NEMKT---------DKFQKRYLAIVHGNLEEKEGTINRPIYRPAEDTI 193
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
K R++ E QE++T Y+V+ NG +E T R HQ+RVH + +LG PI
Sbjct: 194 K--RVV------DERGQESITHYKVIESY-NGADLVECLLETGRTHQIRVHLS-SLGHPI 243
Query: 391 VGDYKYGW----FVHRRWKQMPRVDI-EPTSGKPYKLR 423
GD YG F+ R+ +D P + +P LR
Sbjct: 244 FGDSLYGTEDEEFISRQALHAYGLDFYSPKTKEPLSLR 281
>gi|301311874|ref|ZP_07217796.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
20_3]
gi|300829976|gb|EFK60624.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
20_3]
Length = 546
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 99/206 (48%), Gaps = 35/206 (16%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHL-PVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ Y D +L++NKP VP KG V++ + L Y GP +VHRLD +S
Sbjct: 342 ILYEDDYLLIVNKPAGMLSVPGKGDADSVYHRLHIL------YPDATGPIIVHRLDMATS 395
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL +TKE+ L F K++++ K RY AL+ G + +G I
Sbjct: 396 GLLLAAKTKEAHQNLQAQF----KNRTIQK-----------RYIALLEGEVPQDEGEIRL 440
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD R I+++ G + A T YRVL +G + I P T R HQLRV
Sbjct: 441 PLCPDPLD---RPRQIVSEEFG----KPAFTRYRVL-ERTSGKTLIAFYPQTGRTHQLRV 492
Query: 381 HCAEALG--TPIVGDYKYGWFVHRRW 404
H A LG PI+GD YG R +
Sbjct: 493 HAAHPLGLHCPILGDELYGRKAERLY 518
>gi|222641867|gb|EEE69999.1| hypothetical protein OsJ_29911 [Oryza sativa Japonica Group]
Length = 154
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 50/64 (78%), Gaps = 3/64 (4%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
LRR V ++DSAILVLNKP KVP+KG+LPVHNSMD LAAAAL Y EG KLVH R+ +
Sbjct: 55 LRRPVIHKDSAILVLNKPTKVPMKGNLPVHNSMDVLAAAALLYGNEEGSKLVH---RQRA 111
Query: 261 GLLL 264
LLL
Sbjct: 112 SLLL 115
>gi|18311104|ref|NP_563038.1| hypothetical protein CPE2122 [Clostridium perfringens str. 13]
gi|168215749|ref|ZP_02641374.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
gi|18145787|dbj|BAB81828.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|182382353|gb|EDT79832.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
Length = 298
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 131/278 (47%), Gaps = 54/278 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+K N V++ G I + +S E S + P +I+ + Y DS ILVL
Sbjct: 48 VKMNYVVKTGEEIKIELSKKE-----------SQNIEPEKMDIE-----IVYEDSDILVL 91
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP-----KLVHRLDRESSGLLLMGRTKE 270
NK P + + P + + A + Y + E +LV RLD +SGL+++G+ +
Sbjct: 92 NKKPFMVVH---PTRSHPNGTLANGILYYFKESNQDCIVRLVSRLDMNTSGLIIIGKNQY 148
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
+ +L+ N+ K+ + +RY A+V G+ +EK+G I+ P+ + D
Sbjct: 149 AHMVLS------NEMKT---------DKFQKRYLAIVHGNLEEKEGTINRPIYRPAEDTI 193
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
K R++ E QE++T Y+V+ NG +E T R HQ+RVH + +LG PI
Sbjct: 194 K--RVV------DERGQESITHYKVIESY-NGADLVECLLETGRTHQIRVHLS-SLGHPI 243
Query: 391 VGDYKYGW----FVHRRWKQMPRVDI-EPTSGKPYKLR 423
GD YG F+ R+ +D P + +P LR
Sbjct: 244 FGDSLYGTEDEDFISRQALHAYGLDFYSPKTKEPLSLR 281
>gi|313108160|ref|ZP_07794295.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 39016]
gi|386067005|ref|YP_005982309.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa NCGM2.S1]
gi|310880797|gb|EFQ39391.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa 39016]
gi|348035564|dbj|BAK90924.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa NCGM2.S1]
Length = 326
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D A++V+NKP + + G V + + L D + +LVHRLDR++SGLL+
Sbjct: 105 IVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQ-LRPDAKD-IELVHRLDRDTSGLLM 162
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + + S+L L + K + K RY ALV G + + APL K
Sbjct: 163 IAKKR---SMLRHLHEALRGEKIVDK-----------RYHALVRGHWPAGKKNVRAPLLK 208
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L G ER++ G ++A+TE+RVL + + +E RP+T R HQ+RVH
Sbjct: 209 NNLRSG--ERMVEVNVEG----KDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 262
Query: 385 ALGTPIVGDYKYG 397
A G I GD KYG
Sbjct: 263 A-GHAIAGDPKYG 274
>gi|146306651|ref|YP_001187116.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina ymp]
gi|145574852|gb|ABP84384.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
mendocina ymp]
Length = 332
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ P+ + E + + G L +
Sbjct: 63 GEVRVNKGRIKPEYKLQAGDIVR-----VPPLRLAE---RDEPEPVAQGLL-------ER 107
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G ++ + A L D + +LVHRLDR++S
Sbjct: 108 LEAAIVYEDKALIVLNKPAGIAVHGGSGLNYGVIE-AFRQLRPDAKD-LELVHRLDRDTS 165
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G + +
Sbjct: 166 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGHWATAKKQV 208
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
+APL K L G ER++ G +EA+T +RVL + + +E +P+T R HQ+
Sbjct: 209 NAPLQKSNLRSG--ERMVEVDGEG----KEALTLFRVLRRFGDFATLVEAKPVTGRTHQI 262
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A G I GD KYG
Sbjct: 263 RVHAKHA-GHCIAGDSKYG 280
>gi|452879505|ref|ZP_21956598.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa VRFPA01]
gi|452183940|gb|EME10958.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
aeruginosa VRFPA01]
Length = 462
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 97/198 (48%), Gaps = 33/198 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK-----LVHRLDRES 259
+ Y D A++V+NKP + + G ++A + P+ LVHRLDR++
Sbjct: 97 IVYEDKALIVVNKPAGIAVHGG-------SGVSAGVIEVFRQLRPEARDIELVHRLDRDT 149
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ + + S+L L + K + K RY ALV G + I
Sbjct: 150 SGLLMIAKKR---SMLRHLHEALRGEKIVDK-----------RYHALVRGHWPAGKKNIR 195
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ER++ G ++A+TE+RVL + + +E RP+T R HQ+R
Sbjct: 196 APLLKNNLRSG--ERMVEVNVEG----KDALTEFRVLRRFGDFATLVEARPITGRTHQIR 249
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G I GD KYG
Sbjct: 250 VHAKHA-GHAIAGDPKYG 266
>gi|365139622|ref|ZP_09345969.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
4_1_44FAA]
gi|363654235|gb|EHL93150.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
4_1_44FAA]
Length = 331
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 115/254 (45%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 66 KRVKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALSEVILYEDDHIL 117
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 118 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 165
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV+G + ++ APL
Sbjct: 166 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVLGQWQSHTKVVQAPLL 210
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 211 KNILQSG--ERIVRVSQEGKPSETRFKVEERYEFATLVRCS-----PVTGRTHQIRVHTQ 263
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 264 YA-GHPIAFDDRYG 276
>gi|399004331|ref|ZP_10706958.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM18]
gi|398119644|gb|EJM09326.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM18]
Length = 319
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 127/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPLAQ--------GL 89
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + Y D A++V+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 90 LQRLEASIVYEDKALIVINKPAGIAVHGGSGLNYGVIE-AFRQLRPDAKE-LELVHRLDR 147
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + S+L L + + + + +RY ALV G+
Sbjct: 148 DTSGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGNWATSIKQ 192
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ
Sbjct: 193 VRAPLQKSNLRSG--ERMVEVDEEG----KEALTVFKVLRRFGDFATMVEAKPITGRTHQ 246
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 247 IRVHTLHA-GHCIAGDTKYG 265
>gi|313145657|ref|ZP_07807850.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
fragilis 3_1_12]
gi|313134424|gb|EFR51784.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
fragilis 3_1_12]
Length = 539
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 104/220 (47%), Gaps = 34/220 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL---SYDYNEGPKLVHRLDRESSG 261
+ + D +LV++KP +G L V + L+A +L Y GP +VHRLD +SG
Sbjct: 338 ILFEDEWLLVIHKP-----EGLLSVPGKSEELSAYSLLRARYPEATGPMIVHRLDMATSG 392
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
LLL+ +TKE L F +S S+ K +Y AL+ G +G I P
Sbjct: 393 LLLVAKTKEVHQHLQAQF----ESHSIKK-----------QYTALLEGILPTDEGTIDLP 437
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
+ LLD + Q + E+ ++A+T Y V+ NG + I P T R HQLRVH
Sbjct: 438 ICPDLLDRPR-------QKADRESGKKAVTRYCVID-RKNGRTRIAFFPQTGRTHQLRVH 489
Query: 382 CAE--ALGTPIVGDYKYGWFVHRRWKQMPRVDI-EPTSGK 418
A L PI GD YG R + R++ P SG+
Sbjct: 490 SAHPSGLNCPIAGDELYGKRAERLYLHAERLEFTHPVSGQ 529
>gi|348507843|ref|XP_003441465.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like [Oreochromis niloticus]
Length = 387
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 58/273 (21%)
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGH---------LPVHNSMDALAAAALSYDYNEGPK 250
+L R V Y+D ++++NKP VP+ LPV + M + + D P
Sbjct: 113 HLHRSVLYQDKDVVIVNKPYGVPVADDSDVTSITSVLPVLSKM--MDGMKMKSDSQLIPC 170
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
L L+++S+G LL+ R E V + L N++ + + +YW + +G
Sbjct: 171 L--GLEKDSTGTLLLARRDEVVEHVLAL----NRNNKVER-----------KYWVITVGV 213
Query: 311 PKEKQGIIHAPLSKVLLDDGKTE-RIILA-----QNSG--------LEASQEAMTEYRVL 356
P +G+I P+ + + + ++ L+ N G + A+T+YRVL
Sbjct: 214 PVPSEGLIDIPIIEREVTGPQPHYKMALSPLYRLNNEGDGVTKVRSHRQAHPAVTKYRVL 273
Query: 357 GPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTS 416
+GCS +EL+P T KHQLRVH A ALG PI+GD+KY + +++P E
Sbjct: 274 DSS-SGCSLVELQPFTGVKHQLRVHMAFALGCPILGDHKYSHWSKLAPQKLP----ERVL 328
Query: 417 GKPYKLRRPDGLDVQKGSVLSKVPLLHLHCREL 449
GK L +++ V +P LHLH R+L
Sbjct: 329 GK---------LGIEQSKV-RHLP-LHLHARQL 350
>gi|159900009|ref|YP_001546256.1| pseudouridine synthase [Herpetosiphon aurantiacus DSM 785]
gi|159893048|gb|ABX06128.1| pseudouridine synthase [Herpetosiphon aurantiacus DSM 785]
Length = 560
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 97/196 (49%), Gaps = 30/196 (15%)
Query: 205 VKYRDSAILVLNKPPKVPL---KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
+ YRD ILV+NKP V +G L + + AL A L +Y + RLDR++SG
Sbjct: 5 ILYRDEQILVINKPTGVATHAPQGDLALTDVERALRAQ-LQLEY---LAIHQRLDRDTSG 60
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
++L + + L F++ K+ Y ALV G P + QG+I A
Sbjct: 61 VMLFALDPAANANLATAFAEHTIEKT---------------YQALVYGVPIQTQGVIDAA 105
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKHQLRV 380
L+ DG +I ++ +Q A+T YRVL + S +EL+P T R HQLRV
Sbjct: 106 LAPA--GDG----MIQVASAHDRRAQSAITHYRVLVSSPDQRFSLLELQPKTGRTHQLRV 159
Query: 381 HCAEALGTPIVGDYKY 396
HC E LG PIVGD Y
Sbjct: 160 HC-ECLGHPIVGDPLY 174
>gi|83319260|ref|YP_424375.1| ribosomal large subunit pseudouridine synthase A [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
gi|83283146|gb|ABC01078.1| ribosomal large subunit pseudouridine synthase, RluA family
[Mycoplasma capricolum subsp. capricolum ATCC 27343]
Length = 322
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 132/275 (48%), Gaps = 49/275 (17%)
Query: 132 LVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVS--MVEGRISKRYDTIPSG 189
L++ EC ++ + + N +++P ++I + + +++ I+K D +
Sbjct: 36 LIKEECISVNNQIITSN----------NFLVKPNSQIIITIKDPVLDPNITKNKDPV--- 82
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG- 248
L+PN + + + Y+D +LV+NK + + H ++N+ + + A L+ D
Sbjct: 83 -LDPNITKNKDIDLNIIYQDDDLLVINKQNNITV--HPSLNNTNNTIVNALLASDVELSS 139
Query: 249 ------PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR 302
P +VHR+D++++GLL++ + ++ LL+ +F + +Y+
Sbjct: 140 INGELRPGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKN---------------HQIYKE 184
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
Y A+V G K +G+I AP+ + D K + A+N S+ A+T + V+ +
Sbjct: 185 YLAIVTGVIKPNKGLIDAPIGRSQTDRKKMS--VTAKN-----SKHAITTFEVVERFLKN 237
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ I+ + T R HQ+RVH + P++ D YG
Sbjct: 238 -TLIKCQIQTGRTHQIRVHF-NYINHPVLNDPIYG 270
>gi|426371009|ref|XP_004052448.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 2 [Gorilla gorilla gorilla]
Length = 346
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 128/278 (46%), Gaps = 60/278 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSM-DAL-AAAALSYDYNEGP-KLVHRLDR 257
L R + ++D ++V+NKP +P+ G V + D L A + + + P L HRLD+
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKADPLHLCHRLDK 154
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ K+ + LF + ++YWA+ + P G+
Sbjct: 155 ETTGVMVLAWDKDMAHQVQELFRT---------------RQVVKKYWAITVHVPMPSAGV 199
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ P+ + + +Q A+T+Y+VL ++ + +EL+P+T KHQ
Sbjct: 200 VDIPIVE-------------------KEAQVAVTQYQVLSSTLSS-ALVELQPITGIKHQ 239
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LRVH + L PI+GD+KY W ++ + + G KL GL+ K +
Sbjct: 240 LRVHLSFGLACPILGDHKYS-----DWNRLAPQKL--SVGTLKKL----GLEQSKARYIP 288
Query: 438 KVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
LHLH R+L + P L S G + L V +P
Sbjct: 289 ----LHLHARQL----ILPALGS---GKEELNLVCKLP 315
>gi|261346051|ref|ZP_05973695.1| ribosomal large subunit pseudouridine synthase [Providencia
rustigianii DSM 4541]
gi|282565938|gb|EFB71473.1| ribosomal large subunit pseudouridine synthase [Providencia
rustigianii DSM 4541]
Length = 318
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 120/268 (44%), Gaps = 61/268 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTN-EVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V +G++KP K++ N +V P PV R+++R + S L D++
Sbjct: 44 GEVRVNKGRIKPEYKLQANDQVRVP------PV-----RVAERENAPISAKL----DKVA 88
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK--------- 250
L + Y D +ILV+NKP + G + LS+ EG +
Sbjct: 89 ALADCILYEDESILVINKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFL 136
Query: 251 -LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
LVHRLDR++SG+LL+ + + ++ L + M + Y ALV G
Sbjct: 137 ELVHRLDRDTSGILLVAKKRSALRALHEQLR---------------LKQMQKDYLALVRG 181
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
+ + ++ APL K +L G ERI+ + G + E R + + ++
Sbjct: 182 NWQSHMKVVQAPLLKNILQSG--ERIVRVNSEGKPSETRFKVEER-----FDNATLVKAS 234
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T R HQ+RVH A G PI D +YG
Sbjct: 235 PVTGRTHQIRVHTLHA-GHPIAFDDRYG 261
>gi|198275973|ref|ZP_03208504.1| hypothetical protein BACPLE_02156 [Bacteroides plebeius DSM 17135]
gi|198271602|gb|EDY95872.1| pseudouridine synthase, RluA family [Bacteroides plebeius DSM
17135]
Length = 539
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 107/235 (45%), Gaps = 33/235 (14%)
Query: 191 LNPNADEIDYLRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALS-YDYN 246
+ PN E D R+ + Y D +LV++KP + +P N +D++ + Y
Sbjct: 321 VEPNPLEEDVHRQTALEILYEDEWLLVVHKPAGML---SVPGKNDLDSILQRLHNLYPKA 377
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
GP +VHRLD +SGLLL +TKE L LF + +RY AL
Sbjct: 378 TGPLIVHRLDMATSGLLLAAKTKEVHKELQALFE---------------TRLIQKRYTAL 422
Query: 307 VIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
+ G + +GII P+ +D + Q E + A+T YRVL G + +
Sbjct: 423 LEGELETDEGIIDLPICPNPMDRPR-------QMVSREYGKRAVTSYRVL-ERKGGSTRV 474
Query: 367 ELRPLTCRKHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQMPRVD-IEPTSGK 418
P T R HQLRVH A E L PIVGD YG R + ++ + P +G+
Sbjct: 475 TFYPHTGRTHQLRVHAAHPEGLNHPIVGDDLYGQPSDRLYLHAASLEFVHPVTGE 529
>gi|295688944|ref|YP_003592637.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
gi|295430847|gb|ADG10019.1| pseudouridine synthase [Caulobacter segnis ATCC 21756]
Length = 271
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 24/222 (10%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP 249
TL P DEI + V Y D AI+VL+KP + +G +++D L A + P
Sbjct: 23 TLTP--DEIATAQSWVLYEDEAIIVLDKPAGLSSQGGRIKAHTLDDLLWA-FAKPGKARP 79
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI- 308
+L+HRLDR++SG++L +TK + L + +K K+ Y A+V
Sbjct: 80 RLIHRLDRDTSGVILTAKTKPGAAFL----GEAMMAKRFRKS-----------YLAIVAP 124
Query: 309 GSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIEL 368
G+P+ K G+I +PL + + R+ + ++ A + YR L + +EL
Sbjct: 125 GAPEPKGGMIDSPLRRESIGREAYMRVCAPDHP---EAETARSRYRTLA-ANATAALVEL 180
Query: 369 RPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRV 410
P T R HQLRVH A ++G P+ GD +YG + +PR+
Sbjct: 181 SPDTGRMHQLRVHMA-SIGRPLAGDSRYGGALMLGGVAVPRL 221
>gi|256822394|ref|YP_003146357.1| RluA family pseudouridine synthase [Kangiella koreensis DSM 16069]
gi|256795933|gb|ACV26589.1| pseudouridine synthase, RluA family [Kangiella koreensis DSM 16069]
Length = 316
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 99/202 (49%), Gaps = 29/202 (14%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRL 255
+ L + Y D ++VLNKP + + G + M AL E P +LVHRL
Sbjct: 88 VQELESAILYEDKRLIVLNKPHGMAVHGG----SGMSFGVIEALRALRPEAPFLELVHRL 143
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DR++SG LL+ + + S L +L + K + M ++YWALV G K
Sbjct: 144 DRDTSGCLLIAKKR---STLRFLHEQLQK------------KLMSKQYWALVEGKWPAKL 188
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I PL+K L G ER++ +G + ++T + V+ + S + P+T R
Sbjct: 189 KHIDFPLAKNHLKSG--ERVVRVTENG----KPSLTSFNVV-EVFKNFSLVSAEPVTGRT 241
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH +A G P+VGD KYG
Sbjct: 242 HQIRVHAQQA-GHPLVGDPKYG 262
>gi|212557318|gb|ACJ29772.1| Pseudouridine synthase, RluD [Shewanella piezotolerans WP3]
Length = 308
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 122/258 (47%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ +V+ P R VS EGR PS L ++
Sbjct: 36 GEVRVNKKRIKPEYKLQDGDVVRIPPVR----VSESEGRPG------PSAKLT----KVS 81
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + Y D I+VLNKP + + G V ++A+ + + E LVHRLD++
Sbjct: 82 QLENRIIYEDKFIIVLNKPSGIAVHGGSGVDFGVIEAMRSLRTQQKFLE---LVHRLDKD 138
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SGLLL+ + + S L L + K M + Y ALV G ++ +
Sbjct: 139 TSGLLLIAKKR---SALKHLHDQLRYKK------------MQKDYLALVRGEWQKHDKAV 183
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K+ L G ERI+ G +E+ T ++++ + + ++ P+T R HQ+
Sbjct: 184 KAPLLKLTLKSG--ERIVRVNKEG----KESETRFKIM-QRYSDATLVQASPITGRTHQI 236
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 237 RVHCQYA-GHPIACDEKY 253
>gi|261212690|ref|ZP_05926974.1| pseudouridylate synthase LSU rRNA-specific [Vibrio sp. RC341]
gi|260837755|gb|EEX64432.1| pseudouridylate synthase LSU rRNA-specific [Vibrio sp. RC341]
Length = 396
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 104/214 (48%), Gaps = 33/214 (15%)
Query: 192 NP-NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
NP EID + Y+D AI+V+NKP + + VH+S+ L+ + EG
Sbjct: 186 NPAEGQEID-----IVYQDDAIVVVNKPSEFLSVPGVHVHDSV--LSRLQAQFRDAEGVF 238
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
+HRLD +SGLL+ T+ + +K L K + A+ +RY AL+ G+
Sbjct: 239 ALHRLDMSTSGLLVFALTRRA-------------NKHLQKQF--ITRAVQKRYVALLEGT 283
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+G I PL L DD +++ L Q + A+T + V+ + G + + L P
Sbjct: 284 LDADRGEIQLPLCGDL-DDRPRQKVCLQQG------KPALTHWEVIR-IEQGRTRVYLYP 335
Query: 371 LTCRKHQLRVHCAEALG--TPIVGDYKYGWFVHR 402
T R HQLRVHCA LG PIVGD YG R
Sbjct: 336 HTGRTHQLRVHCAHQLGLDCPIVGDDLYGQQAQR 369
>gi|418294221|ref|ZP_12906117.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
gi|379065600|gb|EHY78343.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
stutzeri ATCC 14405 = CCUG 16156]
Length = 317
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 44/210 (20%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK------- 250
++ L + + + D ++VLNKP + + G + LSY E +
Sbjct: 90 LERLEKAIVHEDKTLIVLNKPAGIAVHG------------GSGLSYGVIEAMRQLRPDAK 137
Query: 251 ---LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
LVHRLDR++SGLL++ + + S+L L + + + +RY ALV
Sbjct: 138 ELELVHRLDRDTSGLLMIAKKR---SMLRHLHQALR------------GDGVDKRYMALV 182
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE 367
G + + ++APL K L G ER++ G +EA+T +RVL + +E
Sbjct: 183 RGRWETSKKQVNAPLLKNTLRSG--ERMVEVTEDG----KEALTLFRVLRRFGEFATLVE 236
Query: 368 LRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+P+T R HQ+RVH A G I GD KYG
Sbjct: 237 AKPVTGRTHQIRVHARHA-GHSIAGDSKYG 265
>gi|354594975|ref|ZP_09013012.1| hypothetical protein CIN_17080 [Commensalibacter intestini A911]
gi|353671814|gb|EHD13516.1| hypothetical protein CIN_17080 [Commensalibacter intestini A911]
Length = 222
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 37/199 (18%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY-----DYNEGPKLVHRLDRES 259
+ ++D+ +++NKP +PV+ + + + Y +GP LVHRLD+++
Sbjct: 12 ILFQDNHFIIINKP------AGMPVYTNRHSTQKSVEDYFPLLSKRKDGPWLVHRLDQDT 65
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
+G L++ K+++ +N K + + + YWA+V G P E G I+
Sbjct: 66 AGCLVIALRKQAL---------INAQSCFEK------KQVTKIYWAIVKGKPSENSGHIN 110
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKHQL 378
APL KV D ++ + Q+ Q A T++++LG NG S +EL+ LT R HQ
Sbjct: 111 APLLKVTKD----KQWSMQQDP---KGQAASTKWKLLGS--NGDISCLELQLLTGRTHQA 161
Query: 379 RVHCAEALGTPIVGDYKYG 397
R HCA LG PI+GD Y
Sbjct: 162 RAHCA-ILGHPIIGDTIYN 179
>gi|146074929|ref|XP_001462641.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5]
gi|398009282|ref|XP_003857841.1| pseudouridylate synthase-like protein [Leishmania donovani]
gi|134066719|emb|CAM65179.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5]
gi|322496043|emb|CBZ31115.1| pseudouridylate synthase-like protein [Leishmania donovani]
Length = 413
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 27/209 (12%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-----NSMDALAAAALSYDYNEG 248
+A + + +V +++ ++V+NKP VP+ +P H N D L A Y +
Sbjct: 156 SAKTREMAQEMVLFKNEHVIVINKPSGVPI---MPTHDPLAMNITDLLPA--WRYTNTQK 210
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
P + H LD E+SG +++ R+ + +L +F S+ YW +
Sbjct: 211 PVICHNLDTETSGCVVLARSANAHRMLGRMFVKRVVPNSV--------------YWGFAV 256
Query: 309 GSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIEL 368
G P G I + G+ +I+A+ + S+ + E+ V + S+I
Sbjct: 257 GKPPVNFGRIRMHFE---IQKGQGGDVIVARPTPTADSKVGIAEFVVNASALEFGSFISF 313
Query: 369 RPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
PLT R+HQ R+ A AL P++GD KYG
Sbjct: 314 YPLTTRRHQERIMAAHALRAPLLGDAKYG 342
>gi|399910323|ref|ZP_10778637.1| ribosomal large subunit pseudouridine synthase C [Halomonas sp.
KM-1]
Length = 315
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 105/231 (45%), Gaps = 50/231 (21%)
Query: 213 LVLNKPPKVPLKGHLPVHNSM-DALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKES 271
LVLNKP +P+ G V + +AL D+ E LVHRLDR++SG LL+
Sbjct: 101 LVLNKPAGLPVHGGSGVKIGLIEALRQVREDLDFLE---LVHRLDRDTSGCLLLA----- 152
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEA--MYQRYWALVIGSPKEKQGIIHAPLSKVLLDD 329
KS+ A N+A + M +RY ALV G ++ + A L + D
Sbjct: 153 ------------KSRPALLALNEALKGHKMDKRYLALVAGRWPARREFVSARLDR--YDA 198
Query: 330 GKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTP 389
G ER + +G + A T + V + IE P+T R HQ+RVH A A G P
Sbjct: 199 GNGERRVRVDAAG----KVARTRFAVR-ETFPKATLIEAEPVTGRTHQIRVHAAHA-GFP 252
Query: 390 IVGDYKYG---------------WFVHRRWKQMPRVDIEPTSGKPYKLRRP 425
++GD KYG F+H P EP+SG+P ++R P
Sbjct: 253 LLGDDKYGSREGAVLARQLGLSRLFLHAESLTFP----EPSSGRPVQIRAP 299
>gi|303236245|ref|ZP_07322841.1| pseudouridine synthase, RluA family [Prevotella disiens FB035-09AN]
gi|302483559|gb|EFL46558.1| pseudouridine synthase, RluA family [Prevotella disiens FB035-09AN]
Length = 532
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 37/234 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D+ + V+ KP + S++A+ ++ + P +VHRLD +SGLL+
Sbjct: 320 IIYEDNDLAVIVKPCGMLTVAGRSQRQSVEAILRT--RWNLSNMPIIVHRLDMATSGLLV 377
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK----QGIIHA 320
+ R KE+ K L +N+ ++ +RY AL+ + K +G I
Sbjct: 378 VARNKEA-------------HKDLQAQFNN--RSVKKRYTALLSTALLTKDLPTEGTISL 422
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM------INGCSWIELRPLTCR 374
PL LLD R I+ G + A T Y+++G I +EL+PLT R
Sbjct: 423 PLRADLLD---RPRQIVDHEQG----KPATTYYKIIGKTPFKDSKIKEAVRVELQPLTGR 475
Query: 375 KHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQMPRVD-IEPTSGKPYKLRRP 425
HQLRVHCA E L TPI+GD YG R + + + P +GK + + P
Sbjct: 476 THQLRVHCAHLEGLNTPILGDTLYGTHADRLYLHAEYLSFVHPRTGKELQFQYP 529
>gi|114562064|ref|YP_749577.1| pseudouridine synthase [Shewanella frigidimarina NCIMB 400]
gi|114333357|gb|ABI70739.1| pseudouridine synthase [Shewanella frigidimarina NCIMB 400]
Length = 579
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 36/233 (15%)
Query: 191 LNPNADE-IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDAL-AAAALSYDYNEG 248
+NP D+ ID + Y+D A++++NKP ++ +P N D++ + + G
Sbjct: 367 INPGKDQHIDII-----YQDDAMVIINKPAELL---SVPGKNITDSVFSRMQQQFPNATG 418
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
P +VHRLD +SGL+++ TKE+ L F +S++K RY AL+
Sbjct: 419 PLIVHRLDMSTSGLMVIALTKEANKALQQQFI----QRSVTK-----------RYIALIE 463
Query: 309 GSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIEL 368
G P + +G I PL +V LDD + + E + A T ++V + + L
Sbjct: 464 GVPSQDEGDISLPL-RVDLDDRPKQLVC------YEHGKHAETHWQVYQRQ-GQRTLVYL 515
Query: 369 RPLTCRKHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQMPRVDIE-PTSGK 418
P T R HQLR+HCA + L PIVGD YG +R + + P SGK
Sbjct: 516 YPKTGRTHQLRMHCAHHDGLHMPIVGDDLYGVATNRLHLHAQYLSLNHPVSGK 568
>gi|334344856|ref|YP_004553408.1| pseudouridine synthase [Sphingobium chlorophenolicum L-1]
gi|334101478|gb|AEG48902.1| pseudouridine synthase [Sphingobium chlorophenolicum L-1]
Length = 225
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 36/220 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D ++L+KP +P+ G L + N + ++L++ + P VHRLDR++S
Sbjct: 8 VLFIDGEAIILDKPAGLPVDAPRDGSLALENHL-----SSLTFGFQRWPLPVHRLDRDTS 62
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ K S A+ A +RY A+V G P E+ +I
Sbjct: 63 GCLLLARNPKA-------------HKRFSAAFEAGTVA--KRYVAVVDGVPAEESSVIEL 107
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K+ + R+I A+ A + A+TE+R + +G + + P T R HQ+R
Sbjct: 108 ALKKIS-TQAQGWRMIPAR-----AGKAAITEWRKIAEK-DGRALVVFTPRTGRTHQIRT 160
Query: 381 HCAEALGTPIVGDYKYG-----WFVHRRWKQMPRVDIEPT 415
H LG IVGD YG +H R+ +PR + P
Sbjct: 161 HALHGLGFGIVGDPVYGSGDGPMLLHSRFLSIPRGEKAPA 200
>gi|443472950|ref|ZP_21062975.1| Ribosomal large subunit pseudouridine synthase C [Pseudomonas
pseudoalcaligenes KF707]
gi|442903513|gb|ELS28804.1| Ribosomal large subunit pseudouridine synthase C [Pseudomonas
pseudoalcaligenes KF707]
Length = 266
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 24/200 (12%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
++ L + Y D A++VLNKP + + G + S + A + +LVHRLDR
Sbjct: 39 LERLEAAIVYEDKALIVLNKPAGIAVHGGSGL--SFGVIEAFRQLRPDAKDLELVHRLDR 96
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + S+L L + + + + +RY ALV GS +
Sbjct: 97 DTSGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYLALVRGSWPTSKKK 141
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ G +EA+TE+RV+ + +E P+T R HQ
Sbjct: 142 VSAPLLKNNLRSG--ERMVEVNPEG----KEALTEFRVVRRFGEFATLVEASPITGRTHQ 195
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 196 IRVHAKHA-GHSIAGDPKYG 214
>gi|328542559|ref|YP_004302668.1| RNA-pseudouridylate synthase, ribosomal large subunit D
[Polymorphum gilvum SL003B-26A1]
gi|326412305|gb|ADZ69368.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Polymorphum gilvum SL003B-26A1]
Length = 346
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 122/266 (45%), Gaps = 37/266 (13%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
I++ EV G +I P V + P ++I + V Y D ++V+
Sbjct: 54 IRSGEVTVDGGKIVEPKYRVNEGATLALGLPEPEEAEPKGEDIPLV---VVYEDDDLIVI 110
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSY--DYNEG------PKLVHRLDRESSGLLLMGR 267
+KP + + H N L A + + D G P +VHRLD+E+SGLL++ +
Sbjct: 111 DKPAGLVV--HPGAGNWTGTLVNALIRHCGDSLSGIGGVRRPGIVHRLDKETSGLLVVAK 168
Query: 268 TKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLL 327
T + L+ F+D +S L +A Y ALV G+P +G + A L++
Sbjct: 169 TDAAHKGLSEQFADHGRSGPLERA-----------YAALVWGAPATLRGTVDANLAR--- 214
Query: 328 DDGKTERIILAQNSGLEASQEAMTEYRVL---GPMING--CSWIELRPLTCRKHQLRVHC 382
D ++I + +N G + A+T ++VL GP S +E R T R HQ+RVH
Sbjct: 215 SDANRQKISVVRNGG----RHAVTHWQVLERFGPADQPAVASLLECRLETGRTHQIRVHM 270
Query: 383 AEALGTPIVGDYKYGWFVHRRWKQMP 408
A +G P++GD YG + + P
Sbjct: 271 AH-IGHPLIGDQIYGAGFRTKANRFP 295
>gi|389592361|ref|XP_003721548.1| pseudouridylate synthase-like protein [Leishmania major strain
Friedlin]
gi|321438079|emb|CBZ11831.1| pseudouridylate synthase-like protein [Leishmania major strain
Friedlin]
Length = 413
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 27/209 (12%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-----NSMDALAAAALSYDYNEG 248
+A + + +V +++ ++V+NKP VP+ +P H N D L A Y +
Sbjct: 156 SAKTREMAQEMVLFKNEHVIVINKPSGVPI---MPTHDPLAMNITDLLPA--WRYTNTQT 210
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
P + H LD E+SG +++ R+ + +L +F S+ YW +
Sbjct: 211 PVICHNLDTETSGCVVLARSANTHRMLGRMFVKRVVPNSV--------------YWGFAV 256
Query: 309 GSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIEL 368
G P G I + G+ +I+A+ + S+ + E+ V + S+I
Sbjct: 257 GKPPVNFGRIRMHFE---VQKGQGGDVIVARPTPTADSKVGIAEFVVNASALEFGSFISF 313
Query: 369 RPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
PLT R+HQ R+ A AL P++GD KYG
Sbjct: 314 YPLTTRRHQERIMAAHALRAPLLGDAKYG 342
>gi|217966766|ref|YP_002352272.1| pseudouridine synthase [Dictyoglomus turgidum DSM 6724]
gi|217335865|gb|ACK41658.1| pseudouridine synthase [Dictyoglomus turgidum DSM 6724]
Length = 226
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 36/222 (16%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----LVHR 254
D LR + Y D+ +LV+NKP V ++G + ++ ++ A + Y + +VHR
Sbjct: 3 DLLRPEIIYEDNHLLVVNKPAGVLVQGDITKSTTLLEISKAYIKEKYQKAGNVFLAIVHR 62
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LD+ SG+++ R +S L+ F + + + K + CE ++ K K
Sbjct: 63 LDKPVSGVVIFARNSKSAGRLSEAF----RERKVEKEYLAICEGIF-----------KIK 107
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+G I+ L D ER A+ S S+ A+T Y VL N S + L P T R
Sbjct: 108 KGTINESL---FWD----ERERKAKISNKAESRVAITHYEVLEEFKN-LSLVRLIPETGR 159
Query: 375 KHQLRVHCAEALGTPIVGDYKYG--------WFVHRRWKQMP 408
KHQLR H + +G PI+GD KYG F+H R ++P
Sbjct: 160 KHQLRAHLS-YIGHPILGDEKYGGVRIFKDKIFLHCRRMRIP 200
>gi|311748604|ref|ZP_07722389.1| ribosomal large subunit pseudouridine synthase family protein
[Algoriphagus sp. PR1]
gi|126577128|gb|EAZ81376.1| ribosomal large subunit pseudouridine synthase family protein
[Algoriphagus sp. PR1]
Length = 245
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
V Y D+ +L++NK V ++G ++ ++ Y++ + VHRLDR S
Sbjct: 9 VVYEDNHLLIVNKTAGVLVQGDKTGDKTLTDYCKDYIAKKYDKPGAVFLHPVHRLDRPVS 68
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL+ RT + + + LF + +++ YWA+V PKEK G
Sbjct: 69 GLVAFARTSKGLERMMELFRKRD---------------IHKVYWAVVKRKPKEKSG---- 109
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+ L+ D + ++ A + + SQ+A Y+ LG M N +E+RP++ R HQ+RV
Sbjct: 110 KLTHWLVKD-EQRNVVTAHDHEVPGSQKAELNYKTLGFM-NDHWLLEVRPISGRPHQIRV 167
Query: 381 HCAEALGTPIVGDYKYGW 398
+ ++G PI GD KYG+
Sbjct: 168 QLS-SMGCPIRGDLKYGF 184
>gi|402312131|ref|ZP_10831061.1| pseudouridine synthase, RluA family [Lachnospiraceae bacterium
ICM7]
gi|400370792|gb|EJP23774.1| pseudouridine synthase, RluA family [Lachnospiraceae bacterium
ICM7]
Length = 340
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 31/252 (12%)
Query: 154 RKIKTNEVMEPGARIFLPVS--MVEGRISKRYDTIPSGTLNPNADE--IDYLRRLVKYRD 209
+K E +EPGA I L S E K+ I NP D+ + + + Y D
Sbjct: 45 KKADGKERLEPGASIKLWFSDESFEKLSGKKAGDIKDLEKNPKVDKKSTETFKSYIVYED 104
Query: 210 SAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE----GPKLVHRLDRESSGLLLM 265
+++NKP + + S++ L L +D P + +RLDR +SGL++
Sbjct: 105 ENTVIINKPAGLLSQKAYENDISVNDLLLDYLEFDSKALNTFKPSICNRLDRNTSGLMVC 164
Query: 266 GRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV 325
G+T E + + L K+K++SK Y+ V+ EK G I+A L K
Sbjct: 165 GKTLEGLRVNNELI----KTKAVSK------------YYLAVVKGRVEKSGSINAWLYK- 207
Query: 326 LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEA 385
D KT ++ + + S E ++ TEY VL + + ++ +T + HQ+R H + +
Sbjct: 208 ---DEKTNKVTVKEKS-FEGAEFIQTEYEVL-DYFKDATLLLVKLITGKTHQIRAHLS-S 261
Query: 386 LGTPIVGDYKYG 397
+ PI+GD+KYG
Sbjct: 262 ISHPIIGDFKYG 273
>gi|311280008|ref|YP_003942239.1| RluA family pseudouridine synthase [Enterobacter cloacae SCF1]
gi|308749203|gb|ADO48955.1| pseudouridine synthase, RluA family [Enterobacter cloacae SCF1]
Length = 341
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 115/254 (45%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 78 KRVKPEYKLEAGDEVRIPPV----RVAEREED----AVSPHLQKVAALSDVILYEDDHIL 129
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 130 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 177
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 178 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 222
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ + G + E R + CS P+T R HQ+RVH
Sbjct: 223 KNILQSG--ERIVRVSSEGKPSETRFKVEERFAFATLVRCS-----PVTGRTHQIRVHTQ 275
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 276 HA-GHPIAFDDRYG 288
>gi|168205929|ref|ZP_02631934.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|170662629|gb|EDT15312.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
Length = 298
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 54/278 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+K N V++ G I + +S E S + P +I+ + Y DS ILVL
Sbjct: 48 VKMNYVVKTGEEIKIELSKKE-----------SQNIEPEKMDIE-----IVYEDSDILVL 91
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP-----KLVHRLDRESSGLLLMGRTKE 270
NK P + + P + + A + Y + E +LV RLD +SGL+++G+ +
Sbjct: 92 NKKPFMVVH---PTRSHPNGTLANGILYYFKESNQDCIVRLVSRLDMNTSGLIIIGKNQY 148
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
+ +L+ N+ K+ + +RY A+V G+ EK+G I+ P+ + D
Sbjct: 149 AHMVLS------NEMKT---------DKFQKRYLAIVHGNLAEKEGTINRPIYRPAEDTI 193
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
K R++ E QE++T Y+V+ NG +E T R HQ+RVH + +LG PI
Sbjct: 194 K--RVV------DERGQESITHYKVIESY-NGADLVECLLETGRTHQIRVHLS-SLGHPI 243
Query: 391 VGDYKYGW----FVHRRWKQMPRVDI-EPTSGKPYKLR 423
GD YG F+ R+ +D P + +P LR
Sbjct: 244 FGDSLYGTEDEEFISRQALHAYGLDFYSPKTKEPLSLR 281
>gi|154331307|ref|XP_001561472.1| pseudouridylate synthase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134058789|emb|CAM36459.1| pseudouridylate synthase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 413
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 27/209 (12%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-----NSMDALAAAALSYDYNEG 248
+A + + +V +++ ++V+NKP VP+ +P H N D L A Y +
Sbjct: 156 SAKAREMAQEMVLFKNEHVVVINKPSGVPI---MPTHDPLAMNITDLLPA--WRYTNTQM 210
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
P + H LD E+SG +L+ R+ + +L +F S+ YW +
Sbjct: 211 PIVCHNLDAETSGCVLLARSANAHRMLGRMFVKRVVPNSV--------------YWGFAV 256
Query: 309 GSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIEL 368
G P G I + G+ +I+A+ + S+ + E+ V + S+I
Sbjct: 257 GKPPVNFGRIRMHFE---IQKGQGGDVIVARPAPTANSKVGIAEFVVNASALEFGSFISF 313
Query: 369 RPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
PLT R+HQ R+ A AL P++GD KYG
Sbjct: 314 YPLTTRRHQERIMAAHALRAPLLGDAKYG 342
>gi|288803452|ref|ZP_06408884.1| ribosomal large subunit pseudouridine synthase A [Prevotella
melaninogenica D18]
gi|288334062|gb|EFC72505.1| ribosomal large subunit pseudouridine synthase A [Prevotella
melaninogenica D18]
Length = 571
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 106/241 (43%), Gaps = 53/241 (21%)
Query: 178 RISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPP---KVPLKGHLPVHNSMD 234
R + +T+PS L + Y D + V+ KP VP KG P S+
Sbjct: 347 RTNNETETVPSEGLK------------ILYEDDYLAVVVKPSDMLSVPGKGCQPSVYSIL 394
Query: 235 ALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWND 294
+ S + +VHRLD +SGLL++ RT E L F + K
Sbjct: 395 SERWKGKSDAF-----MVHRLDMATSGLLVVARTSEVHKALQAQFIERTVKK-------- 441
Query: 295 ACEAMYQRYWALVIGSPKEKQ----GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
+Y AL+ S EKQ G I PLS LD R + + +G + A+
Sbjct: 442 -------KYVALLPLSILEKQLPAEGRIELPLS---LDPDDRPRQRVDRTNG----KPAI 487
Query: 351 TEYRVLGPMING-----CSWIELRPLTCRKHQLRVHCA--EALGTPIVGDYKYGWFVHRR 403
TEYR++G G IEL PLT R HQLRVHCA + LGTPI+GD YG R
Sbjct: 488 TEYRLIGKTTYGKETLKAVKIELYPLTGRTHQLRVHCAHPDGLGTPIIGDNLYGQRAERL 547
Query: 404 W 404
W
Sbjct: 548 W 548
>gi|124003349|ref|ZP_01688199.1| ribosomal large subunit pseudouridine synthase C [Microscilla
marina ATCC 23134]
gi|123991447|gb|EAY30878.1| ribosomal large subunit pseudouridine synthase C [Microscilla
marina ATCC 23134]
Length = 250
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 28/199 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLV-----HRLDRES 259
V Y D+ ++++NK + ++G ++ + Y++ P V HR+DR
Sbjct: 15 VLYEDNHLIIVNKKGGMLVQGDKTGDKTLGDWVKEYIKEKYDK-PGAVFLGIPHRIDRPV 73
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG++++ RT +++ + LF K++ + K YWA+V P E++G +
Sbjct: 74 SGIVILARTSKALERMNQLF----KTRKIQKT-----------YWAIVKRKPAEEEGKLV 118
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
L K DG + ++ A + ++ +Q+A T Y+VLG + N +E+ P+T R HQ+R
Sbjct: 119 HWLKK----DG-AKNVVTAHDEPVDGAQKAETRYKVLGNL-NDHWLLEVNPITGRPHQIR 172
Query: 380 VHCAEALGTPIVGDYKYGW 398
V A ++G PI GD KYG+
Sbjct: 173 VQLA-SMGCPIRGDIKYGF 190
>gi|407003108|gb|EKE19731.1| hypothetical protein ACD_8C00118G0003 [uncultured bacterium]
Length = 315
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 35/205 (17%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALS--------YDYNEG----PKLV 252
V + + ++V+NK + L+ H + D L A L+ +D + G P +V
Sbjct: 83 VVFENDDMVVINK--QAGLQVHPSFNEKKDTLVNALLAKYPEILDVHDESVGAENRPGIV 140
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK 312
HRLD+++SGL+++ R ++ + L F K++ + K +Y A+ G K
Sbjct: 141 HRLDKDTSGLIVVARNGKAFNALKANF----KNREVEK-----------KYLAITKGIFK 185
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
EK+G+I ++K + ++A+N+ +EA+T +RV+ S +E+ P T
Sbjct: 186 EKEGVIEKAIAK----SSSYRKQVIARNNTKTIIREAVTNFRVVEEC-GDYSMVEVLPKT 240
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+R+H A ++G PIVGD YG
Sbjct: 241 GRTHQIRIHLA-SIGHPIVGDVVYG 264
>gi|389736465|ref|ZP_10190015.1| RluA family pseudouridine synthase [Rhodanobacter sp. 115]
gi|388439344|gb|EIL95932.1| RluA family pseudouridine synthase [Rhodanobacter sp. 115]
Length = 299
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 121/253 (47%), Gaps = 41/253 (16%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEG--------RISKRYDTIPSGTLNPNADEIDYLRRLV 205
R ++T +V G R + EG R+++R P G P A+ + + +
Sbjct: 14 RLLRTGQVRVNGKRAKPDTRLAEGDTLRIPPVRVAER----PVGR-GPAAEMVAQVTDAI 68
Query: 206 KYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ D LV++KP + G V H +++ L AA NE +LVHRLDR++SG+L+
Sbjct: 69 LFEDKHFLVIDKPSGIASHGGSGVSHGAIELLRAA----RPNESLELVHRLDRDTSGVLV 124
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
RT+ + L +A A E Q Y L++G P + + ++APL K
Sbjct: 125 FARTRAGLIGL--------------QAAIRAGEVTKQ-YLCLMVGHPSKAKFDVNAPLQK 169
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
+L G ER++ ++G + ++T +R + G ++ T R HQ+RVH A
Sbjct: 170 SILQGG--ERMVKVSDNG----KPSLTFFREM-EQYPGARLMQATLGTGRTHQIRVHAAH 222
Query: 385 ALGTPIVGDYKYG 397
+G PI GD KYG
Sbjct: 223 -IGHPIAGDPKYG 234
>gi|375133268|ref|YP_005049676.1| ribosomal large chain pseudouridine synthase A [Vibrio furnissii
NCTC 11218]
gi|315182443|gb|ADT89356.1| ribosomal large chain pseudouridine synthase A [Vibrio furnissii
NCTC 11218]
Length = 558
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 98/200 (49%), Gaps = 27/200 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + V +S AL + EGP ++HRLD +SGLL+
Sbjct: 357 IVYQDEAIVVINKPAEFLSVPGVNVKDS--ALTRLEQQFPEVEGPFVLHRLDMSTSGLLV 414
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +KSL K + + +RY AL+ G +GII PL +
Sbjct: 415 FALTRRA-------------NKSLQKQF--ITRGVEKRYVALLSGEIAHGEGIITLPL-R 458
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
LDD + + E + A T ++ +G G + + L P T R HQLRVHCA
Sbjct: 459 PDLDDRPRQMVCF------EHGKAAETYWQTIGTE-QGRTRVYLSPKTGRTHQLRVHCAH 511
Query: 385 ALG--TPIVGDYKYGWFVHR 402
A G TPI GD YG +R
Sbjct: 512 AQGFNTPIWGDDLYGEKANR 531
>gi|148285150|ref|YP_001249240.1| ribosomal large subunit pseudouridine synthase [Orientia
tsutsugamushi str. Boryong]
gi|146740589|emb|CAM81239.1| ribosomal large subunit pseudouridine synthase [Orientia
tsutsugamushi str. Boryong]
Length = 312
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 28/188 (14%)
Query: 210 SAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTK 269
S +++NKP +P +G + S+D A L+ + KLVHRLDRE++GLL++ +
Sbjct: 102 SDYIIINKPALLPTQGGSKISLSLDD-AIKYLNKSFYYDFKLVHRLDRETTGLLIIAKNH 160
Query: 270 ESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDD 329
+ L+ F ++ + Y A++ G P + G I ++K
Sbjct: 161 GTAIKLSQAFLH---------------HSIEKEYIAILQGVPSQLSGEIITNITKT---- 201
Query: 330 GKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKHQLRVHCAEALGT 388
+R+I QN G + ++T+Y+V IN S + P+T R HQLRVH A+ +G
Sbjct: 202 --GDRMIETQNGG----KVSITKYQVKAISINSQLSLVSFIPVTGRTHQLRVHAAK-IGY 254
Query: 389 PIVGDYKY 396
PI+GD KY
Sbjct: 255 PIIGDKKY 262
>gi|117926248|ref|YP_866865.1| ribosomal large subunit pseudouridine synthase A [Magnetococcus
marinus MC-1]
gi|117610004|gb|ABK45459.1| ribosomal large subunit pseudouridine synthase A [Magnetococcus
marinus MC-1]
Length = 224
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 93/196 (47%), Gaps = 27/196 (13%)
Query: 203 RLVKYRDSAILVLNKPPKVPL-KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
R + + D+ +L+ NKP ++P+ +G P A L ++ + P VHRLD +SG
Sbjct: 11 RHILHMDADLLIFNKPNRMPIYRG--PGGGETLADHLPQLCFERGKPPAAVHRLDSATSG 68
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
L++GR K L+ LF+ K YWA+V G P QG+I P
Sbjct: 69 CLVLGRHKGMRRSLSNLFAQGGVEKL---------------YWAVVQGRPLMDQGLIELP 113
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L V ++ + G T ++V+G N + + L P T R HQLRVH
Sbjct: 114 LQDVGWPGRPRVKVRMGGKWG-------RTLFQVMGYGQNE-TLLALMPQTGRTHQLRVH 165
Query: 382 CAEALGTPIVGDYKYG 397
CA A+G PIVGD YG
Sbjct: 166 CA-AMGCPIVGDPLYG 180
>gi|423302159|ref|ZP_17280182.1| RluA family pseudouridine synthase [Bacteroides finegoldii
CL09T03C10]
gi|408471250|gb|EKJ89782.1| RluA family pseudouridine synthase [Bacteroides finegoldii
CL09T03C10]
Length = 561
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 110/237 (46%), Gaps = 41/237 (17%)
Query: 205 VKYRDSAILVLNKPPKV-PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y D ++V+NKP + + G +S+ Y GP +VHRLD +SGLL
Sbjct: 350 IVYEDEWLVVVNKPAGILSVPGKEEDRDSV--YHRLKKKYPDATGPMIVHRLDMATSGLL 407
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ +TKE L F+ S+S+ K RY A++ G + A +
Sbjct: 408 LVAKTKEVHQHLQAQFA----SRSIKK-----------RYVAVLDG--------VTATVE 444
Query: 324 KVLLDDGKTERIIL----------AQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
K L G+T RI L Q E +EA+TEYR++ + I PLT
Sbjct: 445 KTALPPGRTGRIELPLCLNPLDRPRQIVSREHGKEAITEYRIISES-EKHTRIAFYPLTG 503
Query: 374 RKHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQMPRVDI-EPTSGKPYKLRR-PD 426
R HQLRVH A E LG PI+GD YG R + ++ P SGK ++++ PD
Sbjct: 504 RTHQLRVHAAHPEGLGCPILGDELYGKKADRLYLHAEYIEFRHPISGKILRIQKEPD 560
>gi|400286445|ref|ZP_10788477.1| ribosomal large subunit pseudouridine synthase C [Psychrobacter sp.
PAMC 21119]
Length = 336
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 27/214 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
V Y D +LVLNKP + + G + + Y E L+HR+D+++SGLL+
Sbjct: 118 VVYEDDGLLVLNKPSGIAVHGGSGLDFGVIEAMREVTGKKYLE---LIHRIDKDTSGLLM 174
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + + ++ L D + + + Y + G P + I APL +
Sbjct: 175 ISKKRSALKTLQQYLVD---------------KTIQKHYLCIAKGQPALNEQRIDAPLLR 219
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING--CSWIELRPLTCRKHQLRVHC 382
LD G+ + AQ++ + SQ + + MI G S IE +PLT R HQ+RVH
Sbjct: 220 YTLDSGERRVKVEAQDAQSKESQTDIIVHERF--MIAGQPVSLIEAKPLTGRTHQIRVHL 277
Query: 383 AEALGTPIVGDYKYGWF----VHRRWKQMPRVDI 412
A +G I+GD KY VHR R+DI
Sbjct: 278 AH-IGHAILGDSKYNVHDKSGVHRLCLHAWRLDI 310
>gi|345301952|ref|YP_004823854.1| pseudouridine synthase [Rhodothermus marinus SG0.5JP17-172]
gi|345111185|gb|AEN72017.1| pseudouridine synthase [Rhodothermus marinus SG0.5JP17-172]
Length = 237
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 42/239 (17%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D +L ++KP + +P + A L E ++HRLD+E+SG+LL
Sbjct: 7 ILYEDDDLLAVHKPEGL---AAIPERDPSRPSARHLLEAARGERLWVIHRLDKEASGVLL 63
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
R E+ + F K Y ALV G + QG I AP+
Sbjct: 64 FARNAEAHRYMNTRFERRQVRKV---------------YRALVHGRIEPGQGQIQAPI-- 106
Query: 325 VLLDDGKTERIILAQNSGL--EASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
R+ + G+ E + A T YRVL + CS IE PLT R+HQ+RVHC
Sbjct: 107 ---------RMYGSGRMGVDPERGKPAETRYRVLEYLDEACSLIEALPLTGRRHQIRVHC 157
Query: 383 AEALGTPIVGDYKYG-WFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVP 440
+G PIVGD +YG V +R+ PR+ + S + R P+G Q+ +++ VP
Sbjct: 158 YH-VGHPIVGDPRYGDRSVQQRY---PRLMLHALS---IRFRHPNG---QELEIVAPVP 206
>gi|319641478|ref|ZP_07996168.1| pseudouridine synthase [Bacteroides sp. 3_1_40A]
gi|345520091|ref|ZP_08799494.1| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
4_3_47FAA]
gi|317386879|gb|EFV67768.1| pseudouridine synthase [Bacteroides sp. 3_1_40A]
gi|345457005|gb|EET16952.2| ribosomal large subunit pseudouridine synthase A [Bacteroides sp.
4_3_47FAA]
Length = 540
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 96/206 (46%), Gaps = 35/206 (16%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHL-PVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ Y D+ ++V+NKP VP KG + V+ + L Y GP +VHRLD +S
Sbjct: 339 IVYEDNYLVVINKPAGMLSVPGKGEIDSVYQHIKIL------YPDTTGPLIVHRLDMATS 392
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+LL+ + KE L F K++ + K RY AL+ G K+G I
Sbjct: 393 GVLLIAKNKEVHQHLQAQF----KNRMIKK-----------RYIALLDGKISSKEGTIIL 437
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD + Q E + A+T+Y+VL G + I PLT R HQLRV
Sbjct: 438 PLRMDPLDRPR-------QVVDHEHGKTAITQYQVLNEQ-EGNTLIAFYPLTGRTHQLRV 489
Query: 381 HCA--EALGTPIVGDYKYGWFVHRRW 404
H A E L PI GD YG R +
Sbjct: 490 HAAHPEGLHCPIRGDELYGQKADRLY 515
>gi|357011255|ref|ZP_09076254.1| pseudouridine synthase [Paenibacillus elgii B69]
Length = 235
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 26/207 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY----NEGPKLVHRLDRESS 260
V Y D+ ++V+ KPP VP + + L A L + N LVHRLDR
Sbjct: 10 VLYEDNHVIVVVKPPNVPTQEDASRDPDLLTLIKADLKERHQKPGNVYLGLVHRLDRPVG 69
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+++ +T ++ S L SD +++++ K Y A+V G PKE QG
Sbjct: 70 GVMVFAKTSKAASRL----SDAVRTRTIRKV-----------YTAVVNGRPKEPQGT--- 111
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L LL D KT + + S A +EA+ +YRVL +G S +++ T R HQ+RV
Sbjct: 112 -LRHHLLKDTKTNMVSVVPASKTGA-KEAVLDYRVLSGR-DGLSLVQVELHTGRPHQIRV 168
Query: 381 HCAEALGTPIVGDYKYGWFVHRRWKQM 407
A +G P+VGD +YG + + +Q+
Sbjct: 169 QFA-TIGCPLVGDQRYGGALAKPGQQI 194
>gi|262043217|ref|ZP_06016352.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|259039444|gb|EEW40580.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
Length = 331
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 66 KRVKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALSEVILYEDDHIL 117
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LSY EG + LVHRLDR++SG+L
Sbjct: 118 VLNKPSGTAVHG------------GSGLSYGVIEGLRALRPEARFLELVHRLDRDTSGVL 165
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 166 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 210
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 211 KNILQSG--ERIVRVSQEGKPSETRFKVEERYEFATLVRCS-----PVTGRTHQIRVHTQ 263
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 264 YA-GHPIAFDDRYG 276
>gi|383785597|ref|YP_005470167.1| ribosomal large subunit pseudouridine synthase, RluA family
[Leptospirillum ferrooxidans C2-3]
gi|383084510|dbj|BAM08037.1| putative ribosomal large subunit pseudouridine synthase, RluA
family [Leptospirillum ferrooxidans C2-3]
Length = 356
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 129/291 (44%), Gaps = 67/291 (23%)
Query: 148 GQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRL--- 204
Q P + + +++ME G + + MV R + P ++D +++
Sbjct: 34 AQCVPFSRSRVHKLMEEGL-VLVNGQMVSPSHKVRMGDTIQLLIPPPRQQMDLPQKMDLQ 92
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAA-------------AALSY----- 243
+ Y D +LVLNKP + P GH P ++ L A A L++
Sbjct: 93 ILYEDEVVLVLNKPAGLVVHPAPGH-PNGTLVNGLLAHFGQNNESPVSDLAELAFEAKET 151
Query: 244 -----------DYNEGPK------LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSK 286
D E P LVHRLD+++SG++++G+T+ +V+ L F D SK
Sbjct: 152 DLEEKAPPAEGDDGEAPGKLARAGLVHRLDQDTSGVMVIGKTEHAVNNLMVQFRDRIVSK 211
Query: 287 SLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEAS 346
RY ALV G PK+++G I APL + D R + A E
Sbjct: 212 ---------------RYLALVSGIPKKRRGEIDAPLGRSSHD-----RKMFAVR---EDG 248
Query: 347 QEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+++ T YRV+ C+ +++ LT R HQ+RVH + +G P++GD Y
Sbjct: 249 KQSTTRYRVITSYRENCALVDITLLTGRTHQIRVHF-KHIGHPLLGDKVYA 298
>gi|189184769|ref|YP_001938554.1| ribosomal large subunit pseudouridine synthase C [Orientia
tsutsugamushi str. Ikeda]
gi|189181540|dbj|BAG41320.1| ribosomal large subunit pseudouridine synthase C [Orientia
tsutsugamushi str. Ikeda]
Length = 312
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 28/189 (14%)
Query: 210 SAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTK 269
S +++NKP +P +G + S+D A L+ + KLVHRLDRE+SGLL++ +
Sbjct: 102 SDYIIINKPALLPTQGGSKISLSLDD-AIKYLNKSFYYDFKLVHRLDRETSGLLIIAKNH 160
Query: 270 ESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDD 329
++ L+ F ++ + Y A++ G P + G I ++K
Sbjct: 161 KTAIKLSQAF---------------LHHSIEKEYTAILQGVPSQLSGEIITNITKT---- 201
Query: 330 GKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKHQLRVHCAEALGT 388
+R++ QN G + ++T+Y+V +N S + P+T R HQLRVH A+ +G
Sbjct: 202 --GDRMLETQNGG----KVSITKYQVKAVSMNSQLSLVSFIPVTGRTHQLRVHAAK-IGH 254
Query: 389 PIVGDYKYG 397
PI+GD KY
Sbjct: 255 PIIGDKKYN 263
>gi|440716711|ref|ZP_20897215.1| ribosomal large subunit pseudouridine synthase D [Rhodopirellula
baltica SWK14]
gi|436438208|gb|ELP31768.1| ribosomal large subunit pseudouridine synthase D [Rhodopirellula
baltica SWK14]
Length = 231
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 24/197 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----LVHRLDRESS 260
V Y D+ +LV+NKP K+ G ++ +L + N+ K +V RLD +S
Sbjct: 6 VIYEDNHLLVVNKPTKLATMG-AAGQPTLHSLGCDYIRRTCNKPNKVYLGIVSRLDSMTS 64
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+++M RT ++ S LT F+ N + + + Y A+V G +++QG +
Sbjct: 65 GVIVMARTSKAASRLTPQFA------------NHSGDGAKKTYLAVVSGRVEQQQGTL-- 110
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
+ V DD R+ +A +S +A +EA EY VLG + ++++PLT RKHQ+R+
Sbjct: 111 -VDDVYKDDA-AHRMRVAHHSRSDA-KEARLEYEVLG-CDRELTLLKVKPLTGRKHQIRL 166
Query: 381 HCAEALGTPIVGDYKYG 397
AEA G PI+GD KYG
Sbjct: 167 QWAEA-GFPILGDTKYG 182
>gi|375337549|ref|ZP_09778893.1| 23S rRNA pseudouridylate synthase C [Succinivibrionaceae bacterium
WG-1]
Length = 288
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 26/205 (12%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLV 252
N D++ L+ + + + ++V+NKP ++P+ G V + ++A+ A + E L
Sbjct: 87 NLDKVSALKDAILFENEGLMVINKPARMPVHGGSGVDYGVIEAMRAVRPELRFLE---LA 143
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK 312
HRLD+++SG L++ + + ++ L F + + M+++Y ALVIG
Sbjct: 144 HRLDKDTSGCLIIAKKRSTLRALHEQFRE---------------KDMHKQYLALVIGKFS 188
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
+ +++APL K L G ER + L + ++T++ + N + +E P T
Sbjct: 189 PRLKVVNAPLLKNTLSSG--ERFV---KVDLGLGKPSITDFNI-RENFNNVTLVEACPRT 242
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+RVH A G I+GD KYG
Sbjct: 243 GRTHQIRVHLAYK-GHAILGDTKYG 266
>gi|296216599|ref|XP_002754668.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Callithrix jacchus]
Length = 397
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 134/289 (46%), Gaps = 62/289 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGRKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFR---------------IRQVVKKYWAITVRVPIPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + ++DGK ++ ++N+ Q A+T+YRVL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMEDGKMVKMRSSRNA-----QVAVTQYRVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL P+T KHQLRVH + L P++GD+KY W ++ + + G
Sbjct: 254 LSS-ALMELHPITGVKHQLRVHLSFGLDCPVLGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
KL GL+ K + LHLH R+L + P L S+ + +L+
Sbjct: 306 KKL----GLEQSKARYIP----LHLHARQL----ILPALGSRKEELNLV 342
>gi|254785800|ref|YP_003073229.1| ribosomal large subunit pseudouridine synthase C [Teredinibacter
turnerae T7901]
gi|237685873|gb|ACR13137.1| ribosomal large subunit pseudouridine synthase C [Teredinibacter
turnerae T7901]
Length = 314
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 118/257 (45%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP RK+ +++ P+ + E P +
Sbjct: 42 GEVRVNKGRVKPERKLAVGDLVR-----VPPIRLAE----------PDAPTPAGKSLLLA 86
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L V Y +LV+NKP + + G V+ + + A + +LVHRLDRE+S
Sbjct: 87 LEDAVLYETDQLLVVNKPSGLAVHGGSGVN--LGLIEAIRQLKAKDTALELVHRLDRETS 144
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G +L+ R + S+L +L K + K RY ALV G + ++
Sbjct: 145 GCILIARKR---SMLRYLQDLFRGEKQVDK-----------RYQALVKGRWPNRAHSVNV 190
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL K + +G ERI+ A G + + TE+ VL + IE RP+T R HQ+RV
Sbjct: 191 PLLKGEVGNG--ERIVRASPEG----KPSRTEFDVL-ERFESATLIEARPITGRTHQIRV 243
Query: 381 HCAEALGTPIVGDYKYG 397
H A+ G P+VGD KYG
Sbjct: 244 H-AQYKGHPLVGDDKYG 259
>gi|326692704|ref|ZP_08229709.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
argentinum KCTC 3773]
Length = 308
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 29/197 (14%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSYDYNE-GPKLVHRLDRESS 260
+ Y D+ +LV+NKP + P GH L A LS E P +VHR+DR++S
Sbjct: 81 IVYEDADLLVVNKPQGMVVHPAAGHTSGTLVNGLLHHAPLSTINGEFRPGIVHRIDRDTS 140
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLL++ + ++ L S L ND Y+ALV G +E G I+A
Sbjct: 141 GLLMVAKNDQAHQAL---------SAQLKAHKNDRI------YYALVRGEFEENTGTINA 185
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
P+++ +D K + E +EA+T + V+ + G + +++R T R HQ+RV
Sbjct: 186 PIARHAIDRKK--------QAVQEGGREAVTHFEVIARYV-GYTLLKVRLETGRTHQIRV 236
Query: 381 HCAEALGTPIVGDYKYG 397
H +G PIVGD YG
Sbjct: 237 HLTY-IGHPIVGDPVYG 252
>gi|392538263|ref|ZP_10285400.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas marina
mano4]
Length = 550
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 30/223 (13%)
Query: 177 GRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDAL 236
G + K + PS LN A + V Y+D ++++NKP + + + +S+
Sbjct: 324 GHMLKGLNVEPSPLLNNPAQGKELT---VVYQDDDLVIVNKPAEFLSVPGITIDDSV--F 378
Query: 237 AAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC 296
+ GP +VHRLD +SGLL++ K + K++ K + +
Sbjct: 379 LRMKTQFPEATGPLIVHRLDMSTSGLLIIALNKRA-------------HKAIQKQFIE-- 423
Query: 297 EAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVL 356
+ +RY ALV G+ +++ G I PL+ DD +++ + + A+T ++VL
Sbjct: 424 RTIEKRYVALVDGNIEQESGTIELPLTPDF-DDKPRQKVCY------QKGKPALTTWQVL 476
Query: 357 GPMINGCSWIELRPLTCRKHQLRVHCAEALG--TPIVGDYKYG 397
N + ++L P T R HQLRVHCA LG TPI+GD YG
Sbjct: 477 -ERKNNTTRLQLYPKTGRTHQLRVHCAHVLGLNTPIIGDTHYG 518
>gi|294085986|ref|YP_003552746.1| pseudouridine synthase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292665561|gb|ADE40662.1| pseudouridine synthase, RluA family [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 335
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 99/185 (53%), Gaps = 25/185 (13%)
Query: 213 LVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESV 272
L LNKP + ++G +D + AA L+ + +LVHR+D+++SG+LL+ +T +S
Sbjct: 118 LALNKPSGLAVQGGTGTKQHVDGMLAA-LAARGGDRLRLVHRIDKDTSGVLLLAKTLQS- 175
Query: 273 SLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKT 332
++SL+ A++ A+ + Y AL +G P E +G + +SK+ GK+
Sbjct: 176 ------------ARSLTDAFHK--HAIEKTYLALCMGLPPE-EGAVKQAISKL---PGKS 217
Query: 333 ERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVG 392
++A + G Q A T +R + + + LRPLT R HQLR+H A +G I G
Sbjct: 218 GERMVADDDG----QSAHTLFRRVDHAGRKLTLMALRPLTGRTHQLRIHMA-LIGHVICG 272
Query: 393 DYKYG 397
D KYG
Sbjct: 273 DGKYG 277
>gi|410622784|ref|ZP_11333608.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola pallidula
DSM 14239 = ACAM 615]
gi|410157657|dbj|GAC28982.1| 23S rRNA pseudouridine955/2504/2580 synthase [Glaciecola pallidula
DSM 14239 = ACAM 615]
Length = 315
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 104/214 (48%), Gaps = 27/214 (12%)
Query: 185 TIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSY 243
T +N N + + L + + D I+V NKP + + G ++ ++ L A +
Sbjct: 73 TTVKEQVNVNLNRVSTLESHIIFEDDRIIVFNKPSGLAVHGGSGLNFGVIEGLRALRPQH 132
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
+ E LVHRLDR++SG LL+ + + ++ L +S+ + K RY
Sbjct: 133 QFLE---LVHRLDRDTSGCLLIAKKRSALRDLHEQL----RSRQVDK-----------RY 174
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
ALV+G + APL K +L G ER++ + G +AS+ T YR+L
Sbjct: 175 HALVVGEWPADCFKVLAPLQKNVLKSG--ERLVSVSDQG-KASE---TRYRILQSYARS- 227
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ IE P+T R HQ+RVHC A G PI D KYG
Sbjct: 228 TLIEASPVTGRTHQIRVHCLHA-GHPIAMDSKYG 260
>gi|393787131|ref|ZP_10375263.1| RluA family pseudouridine synthase [Bacteroides nordii CL02T12C05]
gi|392658366|gb|EIY51996.1| RluA family pseudouridine synthase [Bacteroides nordii CL02T12C05]
Length = 539
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 107/226 (47%), Gaps = 34/226 (15%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
V + D +LV+NKP VP KG + NS+ Y GP +VHRLD +SG
Sbjct: 338 VLFEDEQLLVVNKPAGMLSVPGKGEI---NSV--YQHLRTQYPDATGPMIVHRLDMATSG 392
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
+LL+ +TKE+ L F K++++ K RY AL+ G +G+++ P
Sbjct: 393 VLLIAKTKETHQNLQAQF----KNRTVKK-----------RYIALLDGIIAPDEGVLNLP 437
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
+ LD + Q E + A+T+Y+VL + I PLT R HQLRVH
Sbjct: 438 ICPDPLDRPR-------QIVNKEYGKTAITKYQVL-ERNESQTRIAFYPLTGRTHQLRVH 489
Query: 382 CAEALG--TPIVGDYKYGWFVHRRWKQMPRVD-IEPTSGKPYKLRR 424
A LG PI GD YG R + ++ + P SG+ ++ R
Sbjct: 490 AAHPLGLNCPITGDELYGKQADRLYLHAEYLEFVHPVSGEIIRIER 535
>gi|221316667|ref|NP_001138299.1| RNA pseudouridylate synthase domain-containing protein 4 isoform b
[Homo sapiens]
Length = 346
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 127/279 (45%), Gaps = 62/279 (22%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFRT---------------RQVVKKYWAITVHVPMPSAG 198
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
++ P+ + + +Q A+T+Y+VL ++ + +EL+P+T KH
Sbjct: 199 VVDIPIVE-------------------KEAQVAVTQYQVLSSTLSS-ALVELQPITGIKH 238
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVL 436
QLRVH + L PI+GD+KY W ++ + + G KL GL+ K +
Sbjct: 239 QLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTLKKL----GLEQSKARYI 287
Query: 437 SKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
LHLH R+L + P L S G + L V +P
Sbjct: 288 P----LHLHARQL----ILPALGS---GKEELNLVCKLP 315
>gi|259501034|ref|ZP_05743936.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners DSM 13335]
gi|302190517|ref|ZP_07266771.1| pseudouridine synthase, RluA family protein [Lactobacillus iners
AB-1]
gi|259167728|gb|EEW52223.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
iners DSM 13335]
Length = 300
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 29/151 (19%)
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
P ++ RLDR++SGL+L+G K +V+ + SD K +++ K Y A+V
Sbjct: 132 PHIITRLDRDTSGLVLVG--KNAVAHARFNVSD--KQRTIKK------------YHAIVH 175
Query: 309 G--SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
G SP + QG+I AP+ K D +R I+ E +E++T+YRV+ I G S +
Sbjct: 176 GNFSPSQLQGVIDAPIGK---KDDPVKRYIM------EGGKESVTKYRVI-KQIAGASLV 225
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
EL+ LT R HQ+RVH + LG P+ GD+ YG
Sbjct: 226 ELQLLTGRTHQIRVHM-QYLGHPLFGDHLYG 255
>gi|188590369|ref|YP_001921578.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
gi|188500650|gb|ACD53786.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
Length = 302
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 81/157 (51%), Gaps = 25/157 (15%)
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
P +VHR+D+++SG+L++ + ES + L D +M + Y+ALV
Sbjct: 131 PGIVHRIDKDTSGVLVIAKNDESHNKLAAQLKD---------------HSMNREYYALVE 175
Query: 309 GSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIEL 368
G K G+I PL + K R+ +A E + A+T Y VL GC+ I+
Sbjct: 176 GRFKNDSGVIDKPLGR-----DKKNRLKIAIT---EDGRRAITHYEVLERYDTGCTLIKC 227
Query: 369 RPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 405
+ T R HQ+RVH A +LG P+VGD YG F +R+K
Sbjct: 228 KLETGRTHQIRVHMA-SLGHPLVGDPLYG-FKKQRFK 262
>gi|383763883|ref|YP_005442865.1| putative pseudouridine synthase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384151|dbj|BAM00968.1| putative pseudouridine synthase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 325
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 133/312 (42%), Gaps = 80/312 (25%)
Query: 111 WVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIF- 169
W+ E S IQ +GLV++E R +K + +EPG +I
Sbjct: 22 WLADRMPERSRSEIQRWIRQGLVRIEG----------------RPVKPGQRIEPGQQITV 65
Query: 170 -LPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKV---PLKG 225
+P S VE TL P A ++ + Y D +LV++KP + P G
Sbjct: 66 EIPPSPVET------------TLAPEAIALN-----IVYEDDDLLVIDKPAGMVVHPSPG 108
Query: 226 HLPVHNSMDALAAAALSY-------DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWL 278
H + L A L + + P +VHRLD+++SGL+++ + + L
Sbjct: 109 H-----ASGTLVHAVLHHCPQIEGVGGEQRPGIVHRLDKDTSGLIVVAKHDYAHRFLQAQ 163
Query: 279 FSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILA 338
F D +Y++Y ALV G +G I+AP+ + T +++L
Sbjct: 164 FKD---------------RTVYKQYLALVEGRLTPSRGRINAPIGR--HPTHHTRQVVLP 206
Query: 339 QN--SGLEASQEAMTEYRVL----------GPMINGCSWIELRPLTCRKHQLRVHCAEAL 386
+ SG A +EA+T+Y VL G + S + P T R HQ+RVH A L
Sbjct: 207 PDALSGTSAGREAVTDYEVLAVYAAPLQGAGNAVATFSLVRAEPHTGRTHQIRVHFA-WL 265
Query: 387 GTPIVGDYKYGW 398
P+VGD YG+
Sbjct: 266 QHPVVGDVLYGF 277
>gi|119469873|ref|ZP_01612711.1| ribosomal large subunit pseudouridine synthase A [Alteromonadales
bacterium TW-7]
gi|119446856|gb|EAW28128.1| ribosomal large subunit pseudouridine synthase A [Alteromonadales
bacterium TW-7]
Length = 550
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 30/223 (13%)
Query: 177 GRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDAL 236
G + K + PS LN A + V Y+D ++++NKP + + + +S+
Sbjct: 324 GHMLKGVNVEPSPLLNNPAQGKELT---VVYQDDDLVIVNKPAEFLSVPGITIDDSV--F 378
Query: 237 AAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC 296
+ GP +VHRLD +SGLL++ K + K++ K + +
Sbjct: 379 LRMKTQFPEATGPLIVHRLDMSTSGLLIIALNKRA-------------HKAIQKQFIE-- 423
Query: 297 EAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVL 356
+ +RY ALV G+ +++ G I PL+ DD +++ + + A+T ++VL
Sbjct: 424 RTIEKRYVALVDGNIEQESGTIELPLTPDF-DDKPRQKVCY------QKGKPALTTWQVL 476
Query: 357 GPMINGCSWIELRPLTCRKHQLRVHCAEALG--TPIVGDYKYG 397
N + ++L P T R HQLRVHCA LG TPI+GD YG
Sbjct: 477 -ERKNNTTRLQLYPKTGRTHQLRVHCAHVLGLNTPIIGDTHYG 518
>gi|378952062|ref|YP_005209550.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
fluorescens F113]
gi|359762076|gb|AEV64155.1| Ribosomal large subunit pseudouridine synthase C [Pseudomonas
fluorescens F113]
Length = 322
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P
Sbjct: 52 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPLAQ--------GL 93
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + Y D A++V+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 94 LQRLEASIVYEDKALIVINKPAGIAVHGGSGLNFGVIE-AFRQLRPDAKE-LELVHRLDR 151
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + S+L L + + + +RY ALV G +
Sbjct: 152 DTSGLLMIAKKR---SMLRHLHEQLR------------GDGVDKRYMALVRGRWETSIKQ 196
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ G +EA+T ++VL + + IE +P+T R HQ
Sbjct: 197 VRAPLLKSNLRSG--ERMVEVNEEG----KEALTVFKVLRRFDDFATLIEAKPVTGRTHQ 250
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 251 IRVHTLHA-GHCIAGDSKYG 269
>gi|351698955|gb|EHB01874.1| RNA pseudouridylate synthase domain-containing protein 4
[Heterocephalus glaber]
Length = 377
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 69/298 (23%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDAL--AAAALSYDYNEGP-KLVHRLDR 257
L R + ++D ++V+NKP +P+ G V + + A + + + P L HRLD+
Sbjct: 95 LSRGILHQDKDLVVINKPYGLPVHGGPGVQLCISEVLPILAKMFHGHKAEPLHLCHRLDK 154
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ KE + LF +++ + K +YWA+ + P G+
Sbjct: 155 ETTGVMVLAWEKEVAHQVQELF----RTRQVEK-----------KYWAVTVRVPVPSAGV 199
Query: 318 IHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
+ P+ + +D+GK ++ ++N+ Q A+T+Y+VL +
Sbjct: 200 VDIPIIEKEVQGQQQHHKMTLCPSYRMDNGKMVKVRTSRNA-----QIAVTQYQVLSSTV 254
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPY 420
+ + +EL P+T KHQLRVH + L P++GD+KY W ++ P
Sbjct: 255 SS-ALVELHPVTGIKHQLRVHLSFGLDCPVLGDHKYS-----DWNRL----------APQ 298
Query: 421 KLRRPDGLDVQKGSVLSK---VPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
KL P G G SK +P LHLH R+L + P L S+ + L+ V +P
Sbjct: 299 KL--PIGTLKNLGLKQSKARYIP-LHLHARQL----ILPPLGSRKEE---LQLVCRLP 346
>gi|160887288|ref|ZP_02068291.1| hypothetical protein BACOVA_05306 [Bacteroides ovatus ATCC 8483]
gi|156107699|gb|EDO09444.1| pseudouridine synthase, RluA family [Bacteroides ovatus ATCC 8483]
Length = 564
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 108/232 (46%), Gaps = 28/232 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAA----ALSYDYNEGPKLVHRLDRESS 260
+ Y D ++V+NKP G L V + + Y GP +VHRLD +S
Sbjct: 350 IVYEDEWLVVVNKPA-----GMLSVPGKEEDRDSVYHRLKKKYPDATGPMIVHRLDMATS 404
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL+ +TKE L F+ S+S+ K + + + AL P + G I
Sbjct: 405 GLLLVAKTKEVHQHLQAQFA----SRSIKKRYVAVLDGVTVEKTAL----PPGRTGRIEL 456
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD R I+++ G +EA+TEYR++ + I PLT R HQLRV
Sbjct: 457 PLCLNPLD---RPRQIVSREHG----KEAITEYRIICES-EKHTRIAFYPLTGRTHQLRV 508
Query: 381 HCA--EALGTPIVGDYKYGWFVHRRWKQMPRVDI-EPTSGKPYKLRRPDGLD 429
H A E LG PI+GD YG R + ++ P SGK ++++ D
Sbjct: 509 HAAHPEGLGCPILGDELYGKKADRLYLHAEYIEFRHPISGKILRIQKEADFD 560
>gi|422910406|ref|ZP_16945046.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE-09]
gi|341633539|gb|EGS58339.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE-09]
Length = 559
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 415
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 416 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 460
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 461 DL-DDRPRQKVCWQQG------KHALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 512
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 513 HLGLNAPIVGDDLYG 527
>gi|227872363|ref|ZP_03990714.1| pseudouridylate synthase [Oribacterium sinus F0268]
gi|227841792|gb|EEJ52071.1| pseudouridylate synthase [Oribacterium sinus F0268]
Length = 303
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 105/199 (52%), Gaps = 30/199 (15%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHL--PVHNSMDALAAAALS-YDYNEGPKLVHRLDRE 258
+ Y D +LV+NK + P GH + N++ A A ++LS + P +VHR+D++
Sbjct: 80 IVYEDDDLLVVNKERGMVVHPAAGHYSGTLVNAVLAHAGSSLSSINGVNRPGIVHRIDKD 139
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
++GLLL+ + S +SL+K + ++ +RY ALV G KE+ GII
Sbjct: 140 TTGLLLICKNDLS-------------HQSLAKQLEE--HSITRRYHALVFGKIKEEDGII 184
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
AP+ G+ E+ Q + +EA+T Y+VL + + +E R T R HQ+
Sbjct: 185 SAPI-------GRDEKDRKKQAISYKHGKEALTHYKVL-ERFSDSTLVECRLETGRTHQI 236
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH +++G P++GD YG
Sbjct: 237 RVHM-KSIGHPLLGDPVYG 254
>gi|110800540|ref|YP_696800.1| RluA family pseudouridine synthase [Clostridium perfringens ATCC
13124]
gi|168208824|ref|ZP_02634449.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|110675187|gb|ABG84174.1| pseudouridine synthase, RluA family [Clostridium perfringens ATCC
13124]
gi|170713119|gb|EDT25301.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
Length = 298
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 54/278 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+K N V++ G I + +S E S + P +I+ + Y DS ILVL
Sbjct: 48 VKMNYVVKTGEEIKIELSKKE-----------SQNIEPEKMDIE-----IVYEDSDILVL 91
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP-----KLVHRLDRESSGLLLMGRTKE 270
NK P + + P + + A + Y + E +LV RLD +SGL+++G+ +
Sbjct: 92 NKKPFMVVH---PTRSHPNGTLANGILYYFKESNQDCIVRLVSRLDMNTSGLIIIGKNQY 148
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
+ +L+ N+ K+ + +RY A+V G+ +EK+G I+ P+ + D
Sbjct: 149 AHMVLS------NEMKT---------DKFQKRYLAIVHGNLEEKEGTINRPIYRPAEDTI 193
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
K R++ E QE++T Y+V+ G +E T R HQ+RVH + +LG PI
Sbjct: 194 K--RVV------DERGQESITHYKVIESY-KGADLVECLLETGRTHQIRVHLS-SLGHPI 243
Query: 391 VGDYKYGW----FVHRRWKQMPRVDI-EPTSGKPYKLR 423
GD YG F+ R+ +D P + KP LR
Sbjct: 244 FGDSLYGTEDEEFISRQALHAYGLDFYSPKTKKPLSLR 281
>gi|11279841|pir||A81748 ribosomal large chain pseudouridine synthase D TC0029 [imported] -
Chlamydia muridarum (strain Nigg)
Length = 345
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 35/201 (17%)
Query: 207 YRDSAILVLNKPPKV---PLKGHLP---VHNSMDALAAAALSYDYNEGP---KLVHRLDR 257
Y D+ ILV+NKP + P GH+ VH + + L ++ E P +VHRLD+
Sbjct: 103 YEDNMILVINKPRNMVVHPAPGHVQGTVVHALLHEIGER-LKQEFPEEPWRPGIVHRLDK 161
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL+ +T+ + ++ + LFS + M + Y A+ I SP +K
Sbjct: 162 DTSGLLITVKTRRAKAVYSELFS---------------SKQMKKMYIAICINSPAQKH-- 204
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKH 376
IH +++ + + E +L++++ E +EA+T VL NG S + L P T R H
Sbjct: 205 IHTRIARHPVK--RKEMTVLSKDT--EGGKEAITHCHVLAS--NGRLSVVALYPETGRTH 258
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVH + LGTPI+GD YG
Sbjct: 259 QLRVHM-KHLGTPILGDPVYG 278
>gi|389684941|ref|ZP_10176265.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
chlororaphis O6]
gi|399008413|ref|ZP_10710886.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM17]
gi|388550594|gb|EIM13863.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
chlororaphis O6]
gi|398116466|gb|EJM06228.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM17]
Length = 318
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 49/262 (18%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPVAQ--------GL 89
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + Y D A++V+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 90 LQRLEASIVYEDKALIVINKPAGIAVHGGSGLNFGVIE-AFRQLRPDAKE-LELVHRLDR 147
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQ 315
++SGLL+ + K +S+ + ++A + + +RY ALV G+
Sbjct: 148 DTSGLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATSI 190
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
+ APL K L G ER++ G +EA+T ++VL + + +E +P+T R
Sbjct: 191 KQVRAPLLKSNLRSG--ERMVEVNEEG----KEALTVFKVLRRFGDFATMVEAKPVTGRT 244
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A G I GD KYG
Sbjct: 245 HQIRVHTLHA-GHCIAGDSKYG 265
>gi|359447827|ref|ZP_09237393.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20480]
gi|358046330|dbj|GAA73642.1| 23S rRNA pseudouridine955/2504/2580 synthase [Pseudoalteromonas sp.
BSi20480]
Length = 319
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP+ K++ ++V+ P+ ++++R + +PS D++
Sbjct: 46 GEVRVNKKRIKPVYKLQLDDVIR-----IPPI-----KVAEREEFVPS-----KLDKVTR 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + + D ++V+NKP + + G + S + A + +LVHRLDR++S
Sbjct: 91 LEDDILFEDKYLIVINKPSGMAVHGGSGL--SYGLIEALRVLRPEERNLELVHRLDRDTS 148
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ + + S+LT L + + + M + YWALV G K +
Sbjct: 149 GCLLISKRR---SVLTSLHEQLRE------------KTMEKNYWALVDGQWDGKTKNVTE 193
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K L G ER++ N + + T ++VL N CS ++ P+T R HQ+RV
Sbjct: 194 GLRKNTLKSG--ERVVRVDNV---EGKPSHTRFKVL-ERFNECSLVQASPVTGRTHQIRV 247
Query: 381 HCAEALGTPIVGDYKYG 397
H + G PI D KYG
Sbjct: 248 H-TQCKGHPIACDDKYG 263
>gi|399058567|ref|ZP_10744667.1| 23S RNA-specific pseudouridylate synthase [Novosphingobium sp.
AP12]
gi|398040770|gb|EJL33864.1| 23S RNA-specific pseudouridylate synthase [Novosphingobium sp.
AP12]
Length = 237
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 96/198 (48%), Gaps = 33/198 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ + D LV++KP +PL G + + +D L + P VHRLDR++S
Sbjct: 5 ILFEDGEALVIDKPAGLPLDRPRAGGPSLEDRLDEL-----KLGFQREPFPVHRLDRDTS 59
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R +S+ + F + +K Y +V G + + G I
Sbjct: 60 GCLLLARNPKSLKRFSAAFEERTVAKI---------------YLGVVAGEFEGESGTIEL 104
Query: 321 PLSKV-LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
LSKV + DG R+I A+ + ++T +R L +++G + +E RP T R HQ+R
Sbjct: 105 ALSKVSTVKDGW--RMIPARKG-----KPSVTHWRKL-EVVDGLTLVEFRPETGRTHQIR 156
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A LG P++GD YG
Sbjct: 157 VHAASGLGLPLLGDPVYG 174
>gi|330811001|ref|YP_004355463.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|423698561|ref|ZP_17673051.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
fluorescens Q8r1-96]
gi|327379109|gb|AEA70459.1| Ribosomal large subunit pseudouridine synthase C [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|388005000|gb|EIK66267.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
fluorescens Q8r1-96]
Length = 322
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 126/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P
Sbjct: 52 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPLAQ--------GL 93
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + Y D A++V+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 94 LQRLEASIIYEDKALIVINKPAGIAVHGGSGLNFGVIE-AFRQLRPDAKE-LELVHRLDR 151
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + S+L L + + + +RY ALV G +
Sbjct: 152 DTSGLLMIAKKR---SMLRHLHEQLR------------GDGVDKRYMALVRGRWETSIKQ 196
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ G +EA+T ++VL + + IE +P+T R HQ
Sbjct: 197 VRAPLLKSNLRSG--ERMVEVNEEG----KEALTVFKVLRRFDDFATLIEAKPVTGRTHQ 250
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 251 IRVHTLHA-GHCIAGDSKYG 269
>gi|298292787|ref|YP_003694726.1| pseudouridine synthase [Starkeya novella DSM 506]
gi|296929298|gb|ADH90107.1| pseudouridine synthase [Starkeya novella DSM 506]
Length = 250
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 33/197 (16%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V +RD +LV++KP + + KG + + +DAL + P+L HRLD+++S
Sbjct: 15 VLHRDGMMLVIDKPAGLAVHKGPKGGETLADHLDAL-----RFGLPNAPELAHRLDKDTS 69
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G L++GR +++++ L F+D K+ Y A+V G P E +G I
Sbjct: 70 GCLVLGRHRKALADLGKAFADGTVGKT---------------YMAVVRGVPAEPRGRIEL 114
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
LSK T +A + QEA++E+ + G + + L PLT R HQLRV
Sbjct: 115 KLSK----RSPTRGWWMAVDPN---GQEAISEWETIAAG-EGLAVLVLSPLTGRTHQLRV 166
Query: 381 HCAEALGTPIVGDYKYG 397
H A+G PI+GD YG
Sbjct: 167 HM-NAIGHPILGDSIYG 182
>gi|110802739|ref|YP_699398.1| pseudouridylate synthase family protein, yabo [Clostridium
perfringens SM101]
gi|110683240|gb|ABG86610.1| pseudouridine synthase, RluA family [Clostridium perfringens SM101]
Length = 298
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 54/278 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+K N V++ G I + +S E S + P +I+ + Y DS ILVL
Sbjct: 48 VKMNYVVKTGEEIKIELSKKE-----------SQNIEPEKMDIE-----IVYEDSDILVL 91
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP-----KLVHRLDRESSGLLLMGRTKE 270
NK P + + P + + A + Y + E +LV RLD +SGL+++G+ +
Sbjct: 92 NKKPFMVVH---PTRSHPNGTLANGILYYFKESNQDCIVRLVSRLDMNTSGLIIIGKNQY 148
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
+ +L+ N+ K+ + +RY A+V G+ +EK+G I+ P+ + D
Sbjct: 149 AHMVLS------NEMKT---------DKFQKRYLAIVHGNLEEKEGTINRPIYRPAEDTI 193
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
K R++ E QE++T Y+V+ NG +E T R HQ+RVH + +LG PI
Sbjct: 194 K--RVV------DERGQESITHYKVIESY-NGADLVECLLETGRTHQIRVHLS-SLGHPI 243
Query: 391 VGDYKYGW----FVHRRWKQMPRVDI-EPTSGKPYKLR 423
GD YG F+ R+ +D P + K LR
Sbjct: 244 FGDSLYGTEDEEFISRQALHAYGLDFYSPKTKKSLSLR 281
>gi|359449676|ref|ZP_09239160.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20480]
gi|358044472|dbj|GAA75409.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20480]
Length = 259
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 30/225 (13%)
Query: 175 VEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMD 234
+ G + K + PS LN A + V Y+D ++++NKP + + + +S+
Sbjct: 31 ILGHMLKGLNVEPSPLLNNPAQGKELT---VVYQDDDLVIVNKPAEFLSVPGITIDDSV- 86
Query: 235 ALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWND 294
+ GP +VHRLD +SGLL++ K + K++ K + +
Sbjct: 87 -FLRMKTQFPEATGPLIVHRLDMSTSGLLIIALNKRA-------------HKAIQKQFIE 132
Query: 295 ACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYR 354
+ +RY ALV G+ +++ G I PL+ D + Q + + A+T ++
Sbjct: 133 --RTIEKRYVALVDGNIEQESGTIELPLTPDFDDKPR-------QKVCYQKGKPALTTWQ 183
Query: 355 VLGPMINGCSWIELRPLTCRKHQLRVHCAEALG--TPIVGDYKYG 397
VL N + ++L P T R HQLRVHCA LG TPI+GD YG
Sbjct: 184 VL-ERKNNTTRLQLYPKTGRTHQLRVHCAHVLGLNTPIIGDTHYG 227
>gi|270284819|ref|ZP_06194213.1| ribosomal large subunit pseudouridine synthase D [Chlamydia
muridarum Nigg]
gi|270288848|ref|ZP_06195150.1| ribosomal large subunit pseudouridine synthase D [Chlamydia
muridarum Weiss]
gi|301336199|ref|ZP_07224401.1| ribosomal large subunit pseudouridine synthase D [Chlamydia
muridarum MopnTet14]
Length = 338
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 35/201 (17%)
Query: 207 YRDSAILVLNKPPKV---PLKGHLP---VHNSMDALAAAALSYDYNEGP---KLVHRLDR 257
Y D+ ILV+NKP + P GH+ VH + + L ++ E P +VHRLD+
Sbjct: 96 YEDNMILVINKPRNMVVHPAPGHVQGTVVHALLHEIGER-LKQEFPEEPWRPGIVHRLDK 154
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL+ +T+ + ++ + LFS SK + K Y A+ I SP +K
Sbjct: 155 DTSGLLITVKTRRAKAVYSELFS----SKQMKKM-----------YIAICINSPAQKH-- 197
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKH 376
IH +++ + + E +L++++ E +EA+T VL NG S + L P T R H
Sbjct: 198 IHTRIARHPVK--RKEMTVLSKDT--EGGKEAITHCHVLAS--NGRLSVVALYPETGRTH 251
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVH + LGTPI+GD YG
Sbjct: 252 QLRVHM-KHLGTPILGDPVYG 271
>gi|50083692|ref|YP_045202.1| 23S rRNA pseudouridylate synthase [Acinetobacter sp. ADP1]
gi|49529668|emb|CAG67380.1| 23S rRNA pseudouridylate synthase [Acinetobacter sp. ADP1]
Length = 310
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 29/207 (14%)
Query: 193 PNADEI--DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
P +D++ L R+V Y D +LV+NKP + + G V + AA Y E
Sbjct: 84 PVSDQVAKSLLNRVV-YEDEGLLVVNKPSGIAVHGGSGVAYGLIEAMRAATGKKYLE--- 139
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
L+HR+DR++SGL+++ + + ++ LL L + K+ Y ALV G
Sbjct: 140 LIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIRKT---------------YAALVKGQ 184
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
Q +I APL + L +G ER + G + + TE+RV + + P
Sbjct: 185 VSLDQQLIDAPLLRYELSNG--ERRVRVSKEG----KPSKTEWRV-AERFKEATLVYASP 237
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
L+ R HQ+RVH ++G P+VGD KYG
Sbjct: 238 LSGRTHQIRVHGL-SIGHPLVGDDKYG 263
>gi|144897894|emb|CAM74758.1| ribosomal large subunit pseudouridine synthase D [Magnetospirillum
gryphiswaldense MSR-1]
Length = 327
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 32/212 (15%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSYDYNEG----PKLVHRLDR 257
V Y D ++V++KPP + P G P H ++AL A G P +VHR+D+
Sbjct: 89 VAYEDDDLIVIDKPPGLVVHPAPGS-PDHTLVNALLAHCGESLSGIGGVKRPGIVHRIDK 147
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + L FS ++ + Y ALV G P QG
Sbjct: 148 DTSGLLVVAKNDRAHHGLAEQFS---------------VHSLERAYRALVWGVPMPAQGE 192
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC-SWIELRPLTCRKH 376
IH + + D +++ + + G + A+T YRVL G S +E R T R H
Sbjct: 193 IHGNIGRSPQD---RKKMAIVSHGG----KPALTRYRVLRSFAGGAVSLVECRLATGRTH 245
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMP 408
Q+RVH ++G P+VGD YG + K +P
Sbjct: 246 QIRVHMT-SIGHPLVGDQTYGRARSTKVKHLP 276
>gi|395232068|ref|ZP_10410320.1| 23S rRNA pseudouridylate synthase C [Enterobacter sp. Ag1]
gi|394733572|gb|EJF33189.1| 23S rRNA pseudouridylate synthase C [Enterobacter sp. Ag1]
Length = 317
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 121/265 (45%), Gaps = 54/265 (20%)
Query: 144 FVEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLR 202
V +G+++ +K IK +E G + +P R+++R + ++P+ ++ L
Sbjct: 41 IVRKGEVRVNKKRIKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALT 92
Query: 203 RLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LV 252
++ Y D ILVLNKP + G + LS+ EG + LV
Sbjct: 93 DVILYEDDHILVLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELV 140
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK 312
HRLDR++SG+LL+ + + ++ +SL + D + M + Y ALV G +
Sbjct: 141 HRLDRDTSGVLLVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQ 185
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
++ APL K +L G ERI+ + G + E R + CS P+T
Sbjct: 186 SHVKVVQAPLLKNILQSG--ERIVRVNSEGKPSETRFKVEERYEFATLVRCS-----PVT 238
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+RVH A G PI D +YG
Sbjct: 239 GRTHQIRVHTLHA-GHPIAFDDRYG 262
>gi|423314415|ref|ZP_17292349.1| RluA family pseudouridine synthase [Bacteroides vulgatus
CL09T03C04]
gi|392682660|gb|EIY76003.1| RluA family pseudouridine synthase [Bacteroides vulgatus
CL09T03C04]
Length = 540
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 96/206 (46%), Gaps = 35/206 (16%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHL-PVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ Y D+ ++V+NKP VP KG + V+ + L Y GP +VHRLD +S
Sbjct: 339 IVYEDNYLVVINKPAGMLSVPGKGEIDSVYQHIKIL------YPDATGPLIVHRLDMATS 392
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+LL+ + KE L F K++ + K RY AL+ G K+G I
Sbjct: 393 GVLLIAKNKEVHQHLQAQF----KNRMIKK-----------RYIALLDGKISSKEGTIIL 437
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD + Q E + A+T+Y+VL G + I PLT R HQLRV
Sbjct: 438 PLRMDPLDRPR-------QVVDHEHGKTAITQYQVLNEQ-EGNTLIAFYPLTGRTHQLRV 489
Query: 381 HCA--EALGTPIVGDYKYGWFVHRRW 404
H A E L PI GD YG R +
Sbjct: 490 HAAHPEGLHCPIRGDELYGQKADRLY 515
>gi|32474288|ref|NP_867282.1| ribosomal large subunit pseudouridine synthase D [Rhodopirellula
baltica SH 1]
gi|32444826|emb|CAD74828.1| ribosomal large subunit pseudouridine synthase D [Rhodopirellula
baltica SH 1]
Length = 256
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 29/208 (13%)
Query: 194 NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK--- 250
N E+D V Y D+ +LV+NKP K+ G ++ +L + N+ K
Sbjct: 25 NMSEVD-----VIYEDNHLLVVNKPTKLATMG-AAGQPTLHSLGCDYIRRTCNKPNKVYL 78
Query: 251 -LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
+V RLD +SG+++M RT ++ S LT F+ N + + + Y A+V G
Sbjct: 79 GIVSRLDSMTSGVIVMARTSKAASRLTPQFA------------NHSGDGAKKTYLAVVSG 126
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
+++QG + + V DD R+ +A +S +A +EA EY VLG + + ++
Sbjct: 127 RVEQQQGTL---VDDVYKDDA-AHRMRVAHHSRSDA-KEARLEYEVLG-CDRELTLLMVK 180
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
PLT RKHQ+R+ AE +G PI+GD KYG
Sbjct: 181 PLTGRKHQIRLQWAE-VGFPILGDTKYG 207
>gi|402895748|ref|XP_003910979.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Papio anubis]
Length = 377
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 136/296 (45%), Gaps = 65/296 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D+ ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDNNLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFR---------------TRQVVKKYWAITVRVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +D+GK ++ ++N+ Q A+T Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDNGKMVKVRHSRNA-----QVAVTRYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 VSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SMGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
KL GL+ K + LHLH ++L + P L S+ + L V +P
Sbjct: 306 KKL----GLEQSKARYIP----LHLHAQQL----ILPALGSRKED---LTLVCKLP 346
>gi|438000116|ref|YP_007183849.1| 23S rRNA pseudouridine955/2504/2580 synthase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813048|ref|YP_007449501.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339350|gb|AFZ83772.1| 23S rRNA pseudouridine955/2504/2580 synthase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451779017|gb|AGF49897.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 309
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 24/193 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
V Y D +LV+NKP V + G + S + Y N +LVHRLDR++SGLL+
Sbjct: 84 VAYEDDYLLVINKPSGVAVHGGSGI--SFGVIEQVREYYKENSFLELVHRLDRDTSGLLI 141
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + + ++ + D + +RY ALV G ++ I + LSK
Sbjct: 142 LAKKRSTLLAMHSKLRD---------------RLIDKRYVALVHGRWLNQRQHIKSSLSK 186
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
+ G ER + +G QEA T ++ + CS +E+ + R HQ+RVH +
Sbjct: 187 WITKTG--ERRVKVDPNG----QEAHTAVNLIRNYGDSCSLVEVELYSGRTHQIRVHLS- 239
Query: 385 ALGTPIVGDYKYG 397
++G PIVGD KYG
Sbjct: 240 SIGFPIVGDTKYG 252
>gi|150006268|ref|YP_001301012.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
vulgatus ATCC 8482]
gi|294776519|ref|ZP_06741993.1| pseudouridine synthase, RluA family [Bacteroides vulgatus PC510]
gi|149934692|gb|ABR41390.1| ribosomal large subunit pseudouridine synthase A [Bacteroides
vulgatus ATCC 8482]
gi|294449648|gb|EFG18174.1| pseudouridine synthase, RluA family [Bacteroides vulgatus PC510]
Length = 540
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 96/206 (46%), Gaps = 35/206 (16%)
Query: 205 VKYRDSAILVLNKPP---KVPLKGHL-PVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ Y D+ ++V+NKP VP KG + V+ + L Y GP +VHRLD +S
Sbjct: 339 IVYEDNYLVVINKPAGMLSVPGKGEIDSVYQHIKIL------YPDATGPLIVHRLDMATS 392
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+LL+ + KE L F K++ + K RY AL+ G K+G I
Sbjct: 393 GVLLIAKNKEVHQHLQAQF----KNRMIKK-----------RYIALLDGKISSKEGTIIL 437
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL LD + Q E + A+T+Y+VL G + I PLT R HQLRV
Sbjct: 438 PLRMDPLDRPR-------QVVDHEHGKTAITQYQVLNEQ-EGNTLIAFYPLTGRTHQLRV 489
Query: 381 HCA--EALGTPIVGDYKYGWFVHRRW 404
H A E L PI GD YG R +
Sbjct: 490 HAAHPEGLHCPIRGDELYGQKADRLY 515
>gi|197336758|ref|YP_002158083.1| ribosomal large subunit pseudouridine synthase A [Vibrio fischeri
MJ11]
gi|197314010|gb|ACH63459.1| ribosomal large subunit pseudouridine synthase A [Vibrio fischeri
MJ11]
Length = 568
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 27/200 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D ++V+NKP + + +S+ A A Y GP +VHRLD +SGLL+
Sbjct: 367 IVYEDDVLVVVNKPAEFLSVSGKYISDSVHARIQA--RYPNATGPLIVHRLDMSTSGLLV 424
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ T ES +K + K + + + +RY AL+ G+ + G I+ PL+
Sbjct: 425 LTLTAES-------------NKQVQKQFIE--RTVEKRYTALLEGNIETDNGTINLPLTG 469
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
+ D R ++ SG ++A T Y+V+ + + L P T R HQLRVHCA
Sbjct: 470 DMED---RPRQMVCHKSG----RKAETHYQVIAQE-GKRTKVHLYPHTGRTHQLRVHCAH 521
Query: 385 --ALGTPIVGDYKYGWFVHR 402
L TPIVGD YG+ +R
Sbjct: 522 QAGLNTPIVGDDLYGFKANR 541
>gi|103486532|ref|YP_616093.1| pseudouridine synthase [Sphingopyxis alaskensis RB2256]
gi|98976609|gb|ABF52760.1| pseudouridine synthase [Sphingopyxis alaskensis RB2256]
Length = 227
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 31/197 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D LV++KP +P+ G L + N +D L + + P VHRLDR++S
Sbjct: 7 VLFLDGEALVIDKPAGLPVDAPRDGSLSIENHLDLL-----RFGFKRWPLPVHRLDRDTS 61
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ T F + K +Y A++ G P + G I
Sbjct: 62 GCLLLARNPKAHGRFTRAFENREVEK---------------QYLAIIDGVPADDGGTIDL 106
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL+K + ++ A + +++ + L + +G + + RP T R HQLRV
Sbjct: 107 PLAKTSTAEAGWRMVVD------PAGKPSISHWEKLA-VADGRALLRFRPETGRTHQLRV 159
Query: 381 HCAEALGTPIVGDYKYG 397
H E LG P+ GD YG
Sbjct: 160 HAIEGLGFPLAGDPVYG 176
>gi|359414940|ref|ZP_09207405.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
gi|357173824|gb|EHJ01999.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
Length = 304
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 113/247 (45%), Gaps = 45/247 (18%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+K N ++ G I + ++ E S + P +ID + Y D ILV+
Sbjct: 48 VKMNRILSSGETIKIDLAKDE-----------SQDIAPEKMDID-----IVYEDEDILVV 91
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP----KLVHRLDRESSGLLLMGRTKES 271
NK P + + H LA ++Y G +LV RLD +SGL+++ + + S
Sbjct: 92 NKKPFMVV--HPTKSYQSGTLANGVINYFMESGQNCIVRLVSRLDMNTSGLIIIAKNQFS 149
Query: 272 VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGK 331
+L+ SD NK + +RY A+V G KEKQG I P+ K +
Sbjct: 150 HGMLSKEMSD-NK--------------VEKRYLAIVHGCMKEKQGTIDLPIYKPEGIENG 194
Query: 332 TERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIV 391
+RII E Q ++T Y+V+ N S +E + T R HQ+RVH + LG PI
Sbjct: 195 IKRII------DERGQRSITHYKVVEEFSN-SSLVECKLETGRTHQIRVHLSH-LGHPIY 246
Query: 392 GDYKYGW 398
GD YG+
Sbjct: 247 GDVLYGY 253
>gi|398872453|ref|ZP_10627744.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM74]
gi|398202623|gb|EJM89463.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM74]
Length = 320
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 127/260 (48%), Gaps = 44/260 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPLAQ--------GL 89
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + Y D A++V+NKPP + + G ++ + A L D E +LVHRLDR
Sbjct: 90 LQRLEASIVYEDKALIVINKPPGIAVHGGSGLNYGVIE-AFRQLRPDAKE-LELVHRLDR 147
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + S+L L + + + + +RY ALV G+
Sbjct: 148 DTSGLLMIAKKR---SMLRHLHTALR------------GDGVDKRYMALVRGNWASSIKQ 192
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ A L K L G ER++ E +E++T ++VL + + IE +P+T R HQ
Sbjct: 193 VRASLGKSNLRSG--ERMVEVDE---EEGKESVTVFKVLRRFGDFATLIEAKPITGRTHQ 247
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 248 IRVHTLHA-GHCIAGDTKYG 266
>gi|388455484|ref|ZP_10137779.1| ribosomal large subunit pseudouridine synthase [Fluoribacter
dumoffii Tex-KL]
Length = 318
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 28/199 (14%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + + D LV+NKP + + G + ++AL Y E L+HRLD+E+
Sbjct: 85 LKECIIFEDPCFLVINKPAGIAVHGGSGLSLGVIEALRKTRQDLAYLE---LIHRLDKET 141
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK-EKQGII 318
SG LL+ + + ++ + L +S+ + K YW L+ K +KQ I+
Sbjct: 142 SGCLLLAKKRSTLRAMHALL----ESREVQKT-----------YWTLLTHPWKGKKQVIV 186
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
A L K L G ERI+ S E + + T++++L C W+E P T R HQ+
Sbjct: 187 RAALEKNTLKSG--ERIV----SVTEEGKASETKFKLLENYQQAC-WVEASPKTGRTHQI 239
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A LG IVGD KYG
Sbjct: 240 RVHSAH-LGHVIVGDKKYG 257
>gi|359436147|ref|ZP_09226266.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20311]
gi|359447558|ref|ZP_09237152.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20439]
gi|358029136|dbj|GAA62515.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20311]
gi|358038656|dbj|GAA73401.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20439]
Length = 555
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D +LV+NKP + + + +S+ + + GP +VHRLD +SGLL+
Sbjct: 354 IVYQDDDLLVVNKPAEFLSVPGINIDDSV--YMRIKTQFPHASGPLIVHRLDMSTSGLLM 411
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ K K+L K + + ++ +RY ALV G+ + G I PL
Sbjct: 412 IALNKRV-------------HKALQKQFIE--RSVEKRYVALVAGNIAAESGSIELPL-- 454
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
+LD R ++ +G + ++T ++VL N + ++L P T R HQLRVHCA
Sbjct: 455 -VLDFDDKPRQMVCDKTG----KPSLTTWQVL-ERKNNTTRLQLYPKTGRTHQLRVHCAH 508
Query: 385 ALG--TPIVGDYKYG 397
LG TPIVGD YG
Sbjct: 509 HLGLNTPIVGDTHYG 523
>gi|425898393|ref|ZP_18874984.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397891188|gb|EJL07666.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
Length = 318
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 126/262 (48%), Gaps = 49/262 (18%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV M E R + +P
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----VPPVRMPE-----RDEPVPVAQ--------GL 89
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + Y D A++V+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 90 LQRLEASIVYEDKALIVINKPAGIAVHGGSGLNFGVIE-AFRQLRPDAKE-LELVHRLDR 147
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQ 315
++SGLL+ + K +S+ + ++A + + +RY ALV G+
Sbjct: 148 DTSGLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATSI 190
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
+ APL K L G ER++ G +EA+T ++VL + + +E +P+T R
Sbjct: 191 KQVRAPLLKSNLRSG--ERMVEVNEEG----KEALTVFKVLRRFGDFATMVEAKPVTGRT 244
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A G I GD KYG
Sbjct: 245 HQIRVHTLHA-GHCIAGDSKYG 265
>gi|392961235|ref|ZP_10326697.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
gi|421055225|ref|ZP_15518189.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|421059542|ref|ZP_15522126.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|421063637|ref|ZP_15525593.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|421072105|ref|ZP_15533218.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392440328|gb|EIW18016.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|392446693|gb|EIW23978.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392454161|gb|EIW31006.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
gi|392458803|gb|EIW35293.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|392462495|gb|EIW38568.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
Length = 294
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 36/222 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
+ Y D +L+++KP + + H + L A + Y + G VHRLDR +S
Sbjct: 77 ISYEDDTLLIIDKPAGMLVHPTTSEHTA--TLGNAIMHYFHTRGHSYAFHPVHRLDRNTS 134
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL+L+ + LL+ VN +K++++ +Y AL G K +G I A
Sbjct: 135 GLVLIAKYPHVQHLLS-----VNGAKNINR-----------QYIALTTGIIKPSEGTIDA 178
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
P+++ D +RII + Q A T Y+VL P+ N S ++L LT R HQ+RV
Sbjct: 179 PIAR--HPDSIIQRIIDPK------GQHATTCYQVLKPLKNA-SIVQLTLLTGRTHQIRV 229
Query: 381 HCAEALGTPIVGDYKYGW---FVHRRWKQMPRVDI-EPTSGK 418
H + LG PI+GD YG + R+ R+ P SGK
Sbjct: 230 HLSH-LGHPIIGDDLYGGSRELISRQALHAARLYFTHPLSGK 270
>gi|171912659|ref|ZP_02928129.1| hypothetical protein VspiD_15805 [Verrucomicrobium spinosum DSM
4136]
Length = 596
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 27/193 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN-EGPKLVHRLDRESSGLL 263
V + D AI+VL+KP +P+ P A LS Y + P+LVHRLD ++GL+
Sbjct: 381 VLHEDEAIVVLDKPAPLPMH---PAGRFNRNTAQYILSQVYAPQRPRLVHRLDANTTGLV 437
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
+ RT+ +LL F D + K Y V+G P+ Q ++ AP+S
Sbjct: 438 VCARTRHFANLLQKQFKDFSIEKG---------------YVVRVLGHPEADQFMVDAPIS 482
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
+ G + + G Q A T++ VL +G S +E RPLT R +Q+R+H A
Sbjct: 483 A---EPGHLGSYAVDEEMG----QSARTDFVVLSRDGDGTSLLEARPLTGRTNQIRLHLA 535
Query: 384 EALGTPIVGDYKY 396
LG IVGD Y
Sbjct: 536 H-LGHNIVGDPTY 547
>gi|404400397|ref|ZP_10991981.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
fuscovaginae UPB0736]
Length = 318
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 47/261 (18%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIP--SGTLNPNADEI 198
G+ V +G++KP K++ +++ PV R+ +R + +P G L D I
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPVAQGLLQRLEDSI 97
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
+ D A++V+NKP + + G + + A L D E +LVHRLDR+
Sbjct: 98 -------VFEDKALIVINKPAGIAVHGGSGLSFGVIE-AFRQLRPDAKE-LELVHRLDRD 148
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQG 316
+SGLL+ + K +S+ + ++A + + +RY ALV G+
Sbjct: 149 TSGLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGNWATSIK 191
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
+ APL K L G ER++ + G +EA+T ++VL + + +E +P+T R H
Sbjct: 192 QVRAPLLKSNLRSG--ERMVEVNDEG----KEALTVFKVLRRFGDFATMVEAKPVTGRTH 245
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q+RVH A G I GD KYG
Sbjct: 246 QIRVHTLHA-GHCIAGDSKYG 265
>gi|254517296|ref|ZP_05129353.1| tRNA pseudouridine synthase C [gamma proteobacterium NOR5-3]
gi|219674134|gb|EED30503.1| tRNA pseudouridine synthase C [gamma proteobacterium NOR5-3]
Length = 248
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 111/247 (44%), Gaps = 50/247 (20%)
Query: 205 VKYRDSAILVLNKPPKVPL-KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
V Y+D ++V++KPP + + + + H + AL + P VHRLD+ +SGLL
Sbjct: 8 VIYQDRDLVVIDKPPGLLVHRSKIDRHETQFALQMLRDQLGQHVFP--VHRLDKPTSGLL 65
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
+ + E +LL+ F + A+ +RY A+V G + I HA
Sbjct: 66 IFALSSEVATLLSEQFEN---------------RAVAKRYLAVVRGYCPQGGEIDHALTE 110
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM----------INGCSWIELRPLTC 373
K +RI+ + +A QEA+T YR L + S +ELRP T
Sbjct: 111 -------KHDRIVDKRARADKAPQEALTHYRTLAQVEWPEAVDRYPQARYSLVELRPQTG 163
Query: 374 RKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDI-------------EPTSGKPY 420
RKHQLR H + +G PI+GD +G VH R+ R D P +G+P
Sbjct: 164 RKHQLRRHM-KHIGHPIIGDATHGKGVHNRFFAR-RFDCGRLLLACTGLEFDHPVTGQPL 221
Query: 421 KLRRPDG 427
+L P G
Sbjct: 222 QLSAPPG 228
>gi|403262397|ref|XP_003923577.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Saimiri boliviensis boliviensis]
Length = 372
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 133/284 (46%), Gaps = 52/284 (18%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF K++ + K +YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELF----KTRQVVK-----------KYWAITVSVPMPSAG 198
Query: 317 IIHAP-LSKVLLDDGKTERIILAQNSGLE-----------ASQEAMTEYRVLGPMINGCS 364
++ P + K + ++ L+ + +E +Q A+T+YRVL ++ +
Sbjct: 199 VVDIPIMEKEAQGQQQHHKMTLSPSYRMEDGKMVKMRSSRKAQVAVTQYRVLSSTLSS-A 257
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRR 424
+EL P+T KHQLRVH + L P++GD+KY W ++ + + K L
Sbjct: 258 LMELHPITGIKHQLRVHLSFGLDCPVLGDHKYS-----DWNKLAPQKLSVGTLKKLGL-- 310
Query: 425 PDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
K S +P LHLH R+L + P L S+ + +L+
Sbjct: 311 -------KQSKARYIP-LHLHARQL----ILPALGSRKEELNLV 342
>gi|238894120|ref|YP_002918854.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|386034265|ref|YP_005954178.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae KCTC
2242]
gi|419971779|ref|ZP_14487209.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419980866|ref|ZP_14496147.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419986072|ref|ZP_14501208.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419989690|ref|ZP_14504665.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419994890|ref|ZP_14509698.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004008|ref|ZP_14518649.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009714|ref|ZP_14524195.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420014687|ref|ZP_14528992.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420018943|ref|ZP_14533138.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420026701|ref|ZP_14540701.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031484|ref|ZP_14545305.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420038265|ref|ZP_14551913.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044304|ref|ZP_14557785.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420050192|ref|ZP_14563494.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055617|ref|ZP_14568782.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420062616|ref|ZP_14575583.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420066125|ref|ZP_14578927.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420070777|ref|ZP_14583427.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078973|ref|ZP_14591425.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420083276|ref|ZP_14595560.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421918594|ref|ZP_16348112.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424830061|ref|ZP_18254789.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|424934049|ref|ZP_18352421.1| Pseudouridine synthase [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|428935764|ref|ZP_19009219.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae JHCK1]
gi|428942292|ref|ZP_19015295.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae VA360]
gi|238546436|dbj|BAH62787.1| 23S rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|339761393|gb|AEJ97613.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae KCTC
2242]
gi|397344575|gb|EJJ37707.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397349439|gb|EJJ42533.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397352717|gb|EJJ45795.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397367455|gb|EJJ60066.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397368663|gb|EJJ61268.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397369189|gb|EJJ61791.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397377703|gb|EJJ69929.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397380672|gb|EJJ72851.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397389604|gb|EJJ81537.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397394733|gb|EJJ86454.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400353|gb|EJJ91998.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397404418|gb|EJJ95926.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397411787|gb|EJK03036.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397412071|gb|EJK03311.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421470|gb|EJK12482.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397427635|gb|EJK18402.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397430395|gb|EJK21090.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397441281|gb|EJK31661.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444279|gb|EJK34562.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451367|gb|EJK41453.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|407808236|gb|EKF79487.1| Pseudouridine synthase [Klebsiella pneumoniae subsp. pneumoniae
KpQ3]
gi|410119092|emb|CCM90737.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|414707486|emb|CCN29190.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae Ecl8]
gi|426298944|gb|EKV61313.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae VA360]
gi|426299773|gb|EKV62091.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae JHCK1]
Length = 317
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRVKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALSEVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVSQEGKPSETRFKVEERYEFATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>gi|13473214|ref|NP_104781.1| pseudouridine synthase [Mesorhizobium loti MAFF303099]
gi|14023962|dbj|BAB50567.1| pseudouridine synthase [Mesorhizobium loti MAFF303099]
Length = 329
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 33/231 (14%)
Query: 192 NPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY--DYNEG- 248
P A + + + V Y D A++V+NKP + + H N L A + + D G
Sbjct: 67 EPAAPQGEAIALDVLYEDDALIVINKPAGLVV--HPGAGNWTGTLVNALIHHCGDSLSGI 124
Query: 249 -----PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
P +VHRLD+E+SG++++ +T + L+ F+D ++ L +A Y
Sbjct: 125 GGVRRPGIVHRLDKETSGVMVVAKTDRAHKALSEAFADHGRTGDLERA-----------Y 173
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM---- 359
ALV G P+ G + APL + + R ++ + G + ++ A+T + V
Sbjct: 174 LALVWGIPQRPTGTVDAPLGRAA---DRVRRAVVPE--GRDDARHAVTHFAVQERFGENQ 228
Query: 360 --INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMP 408
S +E R T R HQ+RVH A +G P++GD YG + ++P
Sbjct: 229 QEFATASLVECRLETGRTHQIRVHMAH-IGHPVIGDPDYGQAFRTKANRLP 278
>gi|390443092|ref|ZP_10230891.1| pseudouridine synthase [Nitritalea halalkaliphila LW7]
gi|389667400|gb|EIM78823.1| pseudouridine synthase [Nitritalea halalkaliphila LW7]
Length = 244
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 26/198 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
V Y D+ +LV+NK V ++G ++ + YN+ ++ VHRLDR S
Sbjct: 8 VVYEDNHLLVVNKAAGVLVQGDRTGDKTLIDYCKEYIKVKYNKPGEVFLHPVHRLDRPVS 67
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL++ RT + + + LF +++ YWA+V PKE++G
Sbjct: 68 GLVVFARTSKGLERMMELFRK---------------REIHKVYWAVVKRKPKEEKG---- 108
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+ L+ D + ++ A + SQ+A Y+ LG +N +E+RP++ R HQ+RV
Sbjct: 109 KLTHYLVKD-EQRNVVSAHEREVPGSQKAELTYKRLG-QLNEHWLLEVRPVSGRPHQIRV 166
Query: 381 HCAEALGTPIVGDYKYGW 398
A ++ PI GD KYG+
Sbjct: 167 QLA-SMSCPIRGDVKYGF 183
>gi|119503335|ref|ZP_01625419.1| ribosomal large subunit pseudouridine synthase C [marine gamma
proteobacterium HTCC2080]
gi|119460981|gb|EAW42072.1| ribosomal large subunit pseudouridine synthase C [marine gamma
proteobacterium HTCC2080]
Length = 320
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 25/197 (12%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
LR + +S +LV+NKPP + + G ++ + A Y+ + +LVHRLDR++S
Sbjct: 99 LRASIIREESTLLVVNKPPGLAVHGGSGINVGLIETLRAM--YETDRYLELVHRLDRDTS 156
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLLL+ R ++ L L +S + K RY LV G + A
Sbjct: 157 GLLLVARRASTLRNLHVLL----RSNGIDK-----------RYLCLVNGRWPAHLKRVDA 201
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL K L G ER + +G ++++T +RV+ + + +E +P+T R HQ+RV
Sbjct: 202 PLEKFALPSG--ERRVKVAATG----RQSLTTFRVVRRW-SSATLVEAKPVTGRTHQIRV 254
Query: 381 HCAEALGTPIVGDYKYG 397
HC A G PI+GD KY
Sbjct: 255 HCQHA-GFPILGDAKYA 270
>gi|424637932|ref|ZP_18075929.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-55A1]
gi|408021385|gb|EKG58641.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-55A1]
Length = 570
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 369 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 426
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 427 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 471
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 472 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 523
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 524 HLGLNAPIVGDDLYG 538
>gi|423094247|ref|ZP_17082043.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
fluorescens Q2-87]
gi|397885621|gb|EJL02104.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
fluorescens Q2-87]
Length = 322
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 125/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P
Sbjct: 52 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPLAQ--------GL 93
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + Y D A++V+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 94 LQRLEASIVYEDKALIVINKPAGIAVHGGSGLNFGVIE-AFRQLRPDAKE-LELVHRLDR 151
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + S+L L + + + +RY ALV G
Sbjct: 152 DTSGLLMIAKKR---SMLRHLHEQLR------------GDGVDKRYMALVRGRWDTSIKQ 196
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ G +EA+T ++VL + + IE +P+T R HQ
Sbjct: 197 VRAPLLKSNLRSG--ERMVEVNEEG----KEALTVFKVLRRFDDFATLIEAKPVTGRTHQ 250
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 251 IRVHTLHA-GHCIAGDSKYG 269
>gi|256384025|gb|ACU78595.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
mycoides subsp. capri str. GM12]
gi|256384857|gb|ACU79426.1| ribosomal large subunit pseudouridine synthase D [Mycoplasma
mycoides subsp. capri str. GM12]
gi|296455719|gb|ADH21954.1| ribosomal large subunit pseudouridine synthase D [synthetic
Mycoplasma mycoides JCVI-syn1.0]
Length = 310
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 127/273 (46%), Gaps = 57/273 (20%)
Query: 132 LVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTL 191
L++ EC ++ + + N V++P ++I + TI L
Sbjct: 36 LIKEECISVNNQIITNN----------NFVVKPNSQITI--------------TIKDPIL 71
Query: 192 NPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG--- 248
+PN + D + + Y+D +LV+NK + + H + N+ + + A L+ D
Sbjct: 72 DPNLVKNDEIDLDIIYQDDDLLVINKQNNITV--HPSLSNTNNTIVNALLASDVELSSIN 129
Query: 249 ----PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYW 304
P +VHR+D++++GLL++ + ++ LL+ +F + +Y+ Y
Sbjct: 130 GELRPGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKN---------------HQIYKEYL 174
Query: 305 ALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCS 364
A+V G K +G+I AP+ + +D K + A+N S++A+T + V+ + +
Sbjct: 175 AIVSGVIKPNKGLIDAPIGRSQIDRKKMS--VTAKN-----SKQAITTFEVVERFLKN-T 226
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
++ + T R HQ+RVH + P++ D YG
Sbjct: 227 LVKCQIQTGRTHQIRVHF-NYINHPVLNDPVYG 258
>gi|229514608|ref|ZP_04404069.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae TMA 21]
gi|229348588|gb|EEO13546.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae TMA 21]
Length = 570
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 369 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 426
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 427 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 471
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 472 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 523
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 524 HLGLNAPIVGDDLYG 538
>gi|153828997|ref|ZP_01981664.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
623-39]
gi|148875528|gb|EDL73663.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
623-39]
Length = 221
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 20 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 77
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 78 FALTRRA-------------NKQLQKQF--ISRAIQKRYVALIEGKLSETQGEIQLPLCG 122
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 123 DL-DDRPRQKVCWQQ------GKPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 174
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 175 HLGLNAPIVGDDLYG 189
>gi|229527911|ref|ZP_04417302.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae
12129(1)]
gi|229334273|gb|EEN99758.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae
12129(1)]
Length = 570
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 369 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 426
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 427 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 471
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 472 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 523
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 524 HLGLNAPIVGDDLYG 538
>gi|153825763|ref|ZP_01978430.1| ribosomal large chain pseudouridine synthase A [Vibrio cholerae
MZO-2]
gi|149740602|gb|EDM54713.1| ribosomal large chain pseudouridine synthase A [Vibrio cholerae
MZO-2]
Length = 570
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 369 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 426
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 427 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 471
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 472 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 523
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 524 HLGLNAPIVGDDLYG 538
>gi|153212875|ref|ZP_01948492.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
1587]
gi|124116253|gb|EAY35073.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
1587]
Length = 221
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 20 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 77
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 78 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 122
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 123 DL-DDRPRQKVCWQQ------GKPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 174
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 175 HLGLNAPIVGDDLYG 189
>gi|15600875|ref|NP_232505.1| ribosomal large subunit pseudouridine synthase A, partial [Vibrio
cholerae O1 biovar El Tor str. N16961]
gi|121586851|ref|ZP_01676632.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
2740-80]
gi|121727007|ref|ZP_01680203.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
V52]
gi|147672092|ref|YP_001214876.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
O395]
gi|153801249|ref|ZP_01955835.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
MZO-3]
gi|153817723|ref|ZP_01970390.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
NCTC 8457]
gi|153821627|ref|ZP_01974294.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
B33]
gi|254225870|ref|ZP_04919473.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
V51]
gi|254284827|ref|ZP_04959794.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
AM-19226]
gi|9657491|gb|AAF96018.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
O1 biovar El Tor str. N16961]
gi|121548894|gb|EAX58935.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
2740-80]
gi|121630641|gb|EAX63030.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
V52]
gi|124123267|gb|EAY42010.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
MZO-3]
gi|125621597|gb|EAZ49928.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
V51]
gi|126511765|gb|EAZ74359.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
NCTC 8457]
gi|126520824|gb|EAZ78047.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
B33]
gi|146314475|gb|ABQ19015.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
O395]
gi|150425612|gb|EDN17388.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
AM-19226]
Length = 221
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 20 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 77
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 78 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 122
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 123 DL-DDRPRQKVCWQQ------GKPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 174
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 175 HLGLNAPIVGDDLYG 189
>gi|406662332|ref|ZP_11070432.1| Ribosomal large subunit pseudouridine synthase C [Cecembia
lonarensis LW9]
gi|405553781|gb|EKB48967.1| Ribosomal large subunit pseudouridine synthase C [Cecembia
lonarensis LW9]
Length = 244
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
V Y D+ +LV+NK + ++G ++ A ++ Y + + VHRLDR S
Sbjct: 8 VVYEDNHLLVVNKAAGILVQGDKTKDKTLTDYCKAYIAEKYKKPGAVFLHPVHRLDRPVS 67
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL++ RT + + + +F + +++ YWA+V P E+ G
Sbjct: 68 GLVVFARTSKGLERMMEVFRKRD---------------IHKVYWAIVKKRPDEETG---- 108
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+ L+ D + ++ A + + SQ+A Y+ LG + N +E+RP++ R HQ+RV
Sbjct: 109 KLTHWLVKD-EQRNVVTAYDKDVVGSQKAELNYKTLGKL-NDHWLLEVRPISGRPHQIRV 166
Query: 381 HCAEALGTPIVGDYKYGW 398
A ++G PI GD KYG+
Sbjct: 167 QLA-SMGCPIRGDLKYGF 183
>gi|422920392|ref|ZP_16953713.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
BJG-01]
gi|341650337|gb|EGS74205.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
BJG-01]
Length = 570
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 369 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 426
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 427 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 471
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 472 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 523
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 524 HLGLNAPIVGDDLYG 538
>gi|229506727|ref|ZP_04396236.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae BX
330286]
gi|229510479|ref|ZP_04399959.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae B33]
gi|229517390|ref|ZP_04406835.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae RC9]
gi|229605200|ref|YP_002875904.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae
MJ-1236]
gi|298499967|ref|ZP_07009773.1| ribosomal large chain pseudouridine synthase A [Vibrio cholerae MAK
757]
gi|360038109|ref|YP_004939871.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
O1 str. 2010EL-1786]
gi|379743550|ref|YP_005334602.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
IEC224]
gi|417812149|ref|ZP_12458810.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-49A2]
gi|421346205|ref|ZP_15796589.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-46A1]
gi|422915418|ref|ZP_16949867.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HFU-02]
gi|443509076|ref|ZP_21075826.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-65A1]
gi|443521327|ref|ZP_21087649.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-72A2]
gi|229345426|gb|EEO10399.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae RC9]
gi|229352924|gb|EEO17864.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae B33]
gi|229357078|gb|EEO21996.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae BX
330286]
gi|229371686|gb|ACQ62108.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae
MJ-1236]
gi|297541948|gb|EFH77999.1| ribosomal large chain pseudouridine synthase A [Vibrio cholerae MAK
757]
gi|340044969|gb|EGR05917.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-49A2]
gi|341631907|gb|EGS56783.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HFU-02]
gi|356649263|gb|AET29317.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
O1 str. 2010EL-1786]
gi|378796144|gb|AFC59614.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
IEC224]
gi|395947732|gb|EJH58387.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-46A1]
gi|443434313|gb|ELS80470.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-65A1]
gi|443452650|gb|ELT12832.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-72A2]
Length = 570
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 369 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 426
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 427 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 471
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 472 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 523
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 524 HLGLNAPIVGDDLYG 538
>gi|399521345|ref|ZP_10762085.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399110583|emb|CCH38644.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 332
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 123/259 (47%), Gaps = 43/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +V+ P+ + E + + G L
Sbjct: 63 GEVRVNKGRIKPEYKLQAGDVVR-----VPPLRLAE---RDEPEPLAQGLLQ-------R 107
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G ++ + A L D + +LVHRLDR++S
Sbjct: 108 LEAAIVYEDKALIVLNKPAGIAVHGGSGLNYGVIE-AFRQLRPDAKD-LELVHRLDRDTS 165
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGII 318
GLL+ + K +S+ + ++A + + +RY ALV G + I
Sbjct: 166 GLLM-----------------IAKKRSMLRHLHEALRGDGVDKRYMALVRGHWATAKKQI 208
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K L G ER++ G +EA+T +RVL + +E RP+T R HQ+
Sbjct: 209 AAPLLKSNLRSG--ERMVEVNPEG----KEALTVFRVLRRFGEFATLVEARPITGRTHQI 262
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A+ G I GD KYG
Sbjct: 263 RVH-AQYAGHGIAGDSKYG 280
>gi|417818855|ref|ZP_12465475.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE39]
gi|340043569|gb|EGR04527.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE39]
Length = 570
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 369 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 426
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 427 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 471
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 472 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 523
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 524 HLGLNAPIVGDDLYG 538
>gi|312874750|ref|ZP_07734769.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2053A-b]
gi|311089495|gb|EFQ47920.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2053A-b]
Length = 302
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 29/151 (19%)
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
P ++ RLDR++SGL+L+G K +V+ + SD K +++ K Y A+V
Sbjct: 134 PHIITRLDRDTSGLVLVG--KNAVAHARFNVSD--KQRTIKK------------YHAIVH 177
Query: 309 G--SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
G SP + QG+I AP+ K D +R I+ E +E++T+YRV+ + G S +
Sbjct: 178 GNFSPSQLQGVIDAPIGK---KDDPVKRYIM------EGGKESVTKYRVI-KQVAGASLV 227
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
EL+ LT R HQ+RVH + LG P+ GD+ YG
Sbjct: 228 ELQLLTGRTHQIRVHM-QYLGHPLFGDHLYG 257
>gi|167745608|ref|ZP_02417735.1| hypothetical protein ANACAC_00300 [Anaerostipes caccae DSM 14662]
gi|167654920|gb|EDR99049.1| pseudouridine synthase, RluA family [Anaerostipes caccae DSM 14662]
Length = 305
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 29/199 (14%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLP---VHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
+ Y D I+++NKP + P GH V+ M+ + P +VHR+D++
Sbjct: 83 IVYEDRDIILINKPKNMVVHPAPGHYEGTLVNGLMEHCRDELSGINGVLRPGIVHRIDKD 142
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
++G+L++ + + L D + +RY A+V + KE+ G +
Sbjct: 143 TTGILIVCKNDMAHQCLAEQLKD---------------HTITRRYHAIVCHNIKEESGTV 187
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
AP+++ + +R +A + EA + A+T YRVL + G ++IE R T R HQ+
Sbjct: 188 DAPIAR-----SRKDRKKMAIDR--EAGRRAVTHYRVLERLKEGFTYIECRLETGRTHQI 240
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH A ++G P++GD YG
Sbjct: 241 RVHMA-SIGHPLLGDTVYG 258
>gi|255037524|ref|YP_003088145.1| pseudouridine synthase [Dyadobacter fermentans DSM 18053]
gi|254950280|gb|ACT94980.1| pseudouridine synthase [Dyadobacter fermentans DSM 18053]
Length = 243
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
V Y D+ ++++NK P + ++ + + L + YN+ + VHRLDR S
Sbjct: 8 VVYEDNHLIIVNKEPGILVQADVTGDACLLDLVKDYIKEAYNKPGAVFLGTVHRLDRPVS 67
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL++ RT +++ + +F + K+ YWA+V P EK+G +
Sbjct: 68 GLVVFARTSKALERMNEIFRKRDVQKT---------------YWAVVKNKPAEKKGKLVH 112
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+K + + A + + SQ A YR +G IN +E+ P+T R HQ+RV
Sbjct: 113 WLTK-----NEARNVTTAHDEEVPGSQRAELSYRWVGE-INKFHLLEVMPVTGRPHQIRV 166
Query: 381 HCAEALGTPIVGDYKYGW 398
A ++ PI GD KYG+
Sbjct: 167 QLA-SMNCPIRGDVKYGY 183
>gi|421724187|ref|ZP_16163421.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca M5al]
gi|410374996|gb|EKP29643.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca M5al]
Length = 317
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+S++ + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRVKPEYKLEAGDEVRIPPV----RVSEKEEE----AVSPHLQKVAALADVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVNQEGKPSETRFKVEERFTHATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>gi|291518249|emb|CBK73470.1| pseudouridine synthase, RluA family [Butyrivibrio fibrisolvens
16/4]
Length = 295
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 113/226 (50%), Gaps = 34/226 (15%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLV----HRLDRESS 260
+ Y D I+V+NKP +P+ H +++ D+LA Y +G + +RLD+ +S
Sbjct: 83 IVYEDEDIIVINKPAGLPI--HPSLNHYEDSLANGLAYYYEQQGKPFIFRCANRLDKNTS 140
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL ++ + S ++L+ + + ++ Y+A+V G+ ++ +G I A
Sbjct: 141 GLTVISKHLVSANILSTMVKN---------------REFHREYYAIVRGTLEQPEGTIDA 185
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
P+ +V DD I+ + E + A+T Y+V+ NG S + + T R HQ+RV
Sbjct: 186 PIGRV--DDS-----IITRQVDFENGERAVTHYKVMDEK-NGHSLVSIHLETGRTHQIRV 237
Query: 381 HCAEALGTPIVGDYKYG---WFVHRRWKQMPRVD-IEPTSGKPYKL 422
H + +G P++GD+ Y ++ R+ R++ + P + K + L
Sbjct: 238 HF-KYIGHPLIGDHLYNPDFEYMQRQALHSHRIEFVHPITKKQWSL 282
>gi|445113095|ref|ZP_21377421.1| RluA family pseudouridine synthase [Prevotella nigrescens F0103]
gi|444841278|gb|ELX68295.1| RluA family pseudouridine synthase [Prevotella nigrescens F0103]
Length = 568
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 40/198 (20%)
Query: 243 YDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR 302
++ N+ P +VHRLD +SGLL++ R + + L F K +++ K R
Sbjct: 391 WNENDTPIIVHRLDMATSGLLVVARNRYAHKQLQAQF----KERTIQK-----------R 435
Query: 303 YWALV-------IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRV 355
Y AL+ +G PKE G I PL +LD R ++ +N G + A+T Y++
Sbjct: 436 YVALLSTDLLNRVGLPKE--GTISLPLCADVLD---RPRQMVDKNKG----KTAITHYKI 486
Query: 356 LGPMINGCSW------IELRPLTCRKHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQM 407
+G + S+ +ELRP T R HQLRVHCA E L PI+GD YG R +
Sbjct: 487 IGKIPLHDSYYSEAVKVELRPETGRTHQLRVHCAHSEGLACPILGDTLYGKRADRLYLHA 546
Query: 408 PRVDI-EPTSGKPYKLRR 424
++ PT+GK + ++
Sbjct: 547 EYLEFTHPTTGKCLRFKK 564
>gi|227119285|ref|YP_002821180.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
O395]
gi|227811730|ref|YP_002811740.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
M66-2]
gi|254850369|ref|ZP_05239719.1| ribosomal large chain pseudouridine synthase A [Vibrio cholerae
MO10]
gi|417816552|ref|ZP_12463182.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HCUF01]
gi|418330008|ref|ZP_12941042.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-06A1]
gi|418337452|ref|ZP_12946347.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-23A1]
gi|418339535|ref|ZP_12948423.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-28A1]
gi|418349123|ref|ZP_12953855.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-43A1]
gi|418353322|ref|ZP_12956047.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-61A1]
gi|419824142|ref|ZP_14347671.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1033(6)]
gi|421317068|ref|ZP_15767638.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1032(5)]
gi|421319791|ref|ZP_15770349.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1038(11)]
gi|421323834|ref|ZP_15774361.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1041(14)]
gi|421326806|ref|ZP_15777324.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1042(15)]
gi|421331893|ref|ZP_15782372.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1046(19)]
gi|421335525|ref|ZP_15785988.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1048(21)]
gi|421341022|ref|ZP_15791452.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-20A2]
gi|422885275|ref|ZP_16931715.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-40A1]
gi|422897987|ref|ZP_16935406.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-48A1]
gi|422904143|ref|ZP_16939095.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-70A1]
gi|422927042|ref|ZP_16960047.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-38A1]
gi|423146381|ref|ZP_17133949.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-19A1]
gi|423148142|ref|ZP_17135520.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-21A1]
gi|423151928|ref|ZP_17139159.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-22A1]
gi|423158551|ref|ZP_17145564.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-32A1]
gi|423162358|ref|ZP_17149230.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-33A2]
gi|423162552|ref|ZP_17149418.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-48B2]
gi|423732374|ref|ZP_17705671.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-17A1]
gi|423737013|ref|ZP_17710123.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-50A2]
gi|423900635|ref|ZP_17727993.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-62A1]
gi|423912176|ref|ZP_17728692.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-77A1]
gi|424000002|ref|ZP_17743159.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-17A2]
gi|424004634|ref|ZP_17747639.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-37A1]
gi|424021794|ref|ZP_17761503.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-62B1]
gi|424028445|ref|ZP_17768042.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-69A1]
gi|424587731|ref|ZP_18027303.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1030(3)]
gi|424591030|ref|ZP_18030463.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1037(10)]
gi|424592543|ref|ZP_18031958.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1040(13)]
gi|424596405|ref|ZP_18035712.1| RNA pseudouridylate synthase family protein [Vibrio Cholerae
CP1044(17)]
gi|424603259|ref|ZP_18042393.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1047(20)]
gi|424605091|ref|ZP_18044078.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1050(23)]
gi|424607998|ref|ZP_18046932.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-39A1]
gi|424614635|ref|ZP_18053415.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-41A1]
gi|424617121|ref|ZP_18055806.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-42A1]
gi|424621018|ref|ZP_18059547.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-47A1]
gi|424643086|ref|ZP_18080864.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-56A2]
gi|424650151|ref|ZP_18087754.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-57A2]
gi|424654985|ref|ZP_18092303.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-81A2]
gi|440711160|ref|ZP_20891801.1| rluA-2 protein [Vibrio cholerae 4260B]
gi|443505177|ref|ZP_21072118.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-64A1]
gi|443512920|ref|ZP_21079543.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-67A1]
gi|443516466|ref|ZP_21082966.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-68A1]
gi|443521169|ref|ZP_21087499.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-71A1]
gi|443530101|ref|ZP_21096118.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-7A1]
gi|443532750|ref|ZP_21098753.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-80A1]
gi|443537465|ref|ZP_21103323.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-81A1]
gi|449058258|ref|ZP_21736554.1| 23S RNA-specific pseudouridylate synthase [Vibrio cholerae O1 str.
Inaba G4222]
gi|227010872|gb|ACP07083.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
M66-2]
gi|227014735|gb|ACP10944.1| ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
O395]
gi|254846074|gb|EET24488.1| ribosomal large chain pseudouridine synthase A [Vibrio cholerae
MO10]
gi|340039702|gb|EGR00675.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HCUF01]
gi|341630187|gb|EGS55290.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-70A1]
gi|341630978|gb|EGS55921.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-48A1]
gi|341631102|gb|EGS56043.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-40A1]
gi|341645112|gb|EGS69268.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-38A1]
gi|356421284|gb|EHH74787.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-19A1]
gi|356424274|gb|EHH77689.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-21A1]
gi|356426515|gb|EHH79823.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-06A1]
gi|356430836|gb|EHH84041.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-23A1]
gi|356435011|gb|EHH88171.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-32A1]
gi|356436477|gb|EHH89591.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-22A1]
gi|356440455|gb|EHH93396.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-33A2]
gi|356442935|gb|EHH95768.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-28A1]
gi|356445985|gb|EHH98785.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-43A1]
gi|356454387|gb|EHI07034.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-61A1]
gi|356457761|gb|EHI10268.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-48B2]
gi|395919526|gb|EJH30349.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1032(5)]
gi|395921848|gb|EJH32667.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1041(14)]
gi|395924679|gb|EJH35481.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1038(11)]
gi|395930691|gb|EJH41437.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1046(19)]
gi|395933731|gb|EJH44470.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1042(15)]
gi|395935207|gb|EJH45942.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1048(21)]
gi|395938506|gb|EJH49198.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-20A2]
gi|395964379|gb|EJH74603.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-42A1]
gi|395966183|gb|EJH76314.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-56A2]
gi|395969134|gb|EJH79027.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-57A2]
gi|395971380|gb|EJH81048.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1030(3)]
gi|395972767|gb|EJH82345.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1047(20)]
gi|395974995|gb|EJH84498.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-47A1]
gi|408009526|gb|EKG47429.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-41A1]
gi|408015674|gb|EKG53250.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-39A1]
gi|408033303|gb|EKG69857.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1037(10)]
gi|408042987|gb|EKG79014.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1040(13)]
gi|408047980|gb|EKG83464.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1050(23)]
gi|408049549|gb|EKG84741.1| RNA pseudouridylate synthase family protein [Vibrio Cholerae
CP1044(17)]
gi|408058662|gb|EKG93450.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-81A2]
gi|408613805|gb|EKK87091.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1033(6)]
gi|408620873|gb|EKK93877.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-17A1]
gi|408651856|gb|EKL23098.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-50A2]
gi|408653072|gb|EKL24249.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-62A1]
gi|408664247|gb|EKL35086.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-77A1]
gi|408850688|gb|EKL90637.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-37A1]
gi|408854751|gb|EKL94499.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-17A2]
gi|408877878|gb|EKM16903.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-69A1]
gi|408880816|gb|EKM19734.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-62B1]
gi|439972647|gb|ELP48890.1| rluA-2 protein [Vibrio cholerae 4260B]
gi|443430475|gb|ELS73044.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-64A1]
gi|443438107|gb|ELS87837.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-67A1]
gi|443442217|gb|ELS95530.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-68A1]
gi|443445198|gb|ELT01920.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-71A1]
gi|443459671|gb|ELT27065.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-7A1]
gi|443464096|gb|ELT35044.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-80A1]
gi|443467474|gb|ELT42130.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-81A1]
gi|448263530|gb|EMB00771.1| 23S RNA-specific pseudouridylate synthase [Vibrio cholerae O1 str.
Inaba G4222]
Length = 559
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 415
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 416 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 460
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 461 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 512
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 513 HLGLNAPIVGDDLYG 527
>gi|229522777|ref|ZP_04412191.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae TM
11079-80]
gi|229339994|gb|EEO05002.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae TM
11079-80]
Length = 570
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 369 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 426
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 427 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 471
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 472 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 523
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 524 HLGLNAPIVGDDLYG 538
>gi|206577057|ref|YP_002239295.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae 342]
gi|206566115|gb|ACI07891.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae 342]
Length = 317
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRVKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALSEVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVSQEGKPSETRFKVEERYEFATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>gi|119469426|ref|ZP_01612365.1| 23S rRNA pseudouridylate synthase [Alteromonadales bacterium TW-7]
gi|392538949|ref|ZP_10286086.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas marina mano4]
gi|119447290|gb|EAW28559.1| 23S rRNA pseudouridylate synthase [Alteromonadales bacterium TW-7]
Length = 320
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 123/257 (47%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP+ K++ ++++ P+ ++++R + +PS D++
Sbjct: 46 GEVRVNKKRIKPVYKLQLDDIIR-----IPPI-----KVAEREEFVPS-----KLDKVTR 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + + D ++V+NKP + + G + S + A + +LVHRLDR++S
Sbjct: 91 LEDDILFEDKYLIVINKPSGMAVHGGSGL--SYGLIEALRVLRPEERNLELVHRLDRDTS 148
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ + + S+LT L + + + M + YWALV G K +
Sbjct: 149 GCLLISKRR---SVLTSLHEQLRE------------KTMEKNYWALVDGQWDGKTKNVTE 193
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K L G ER++ N + + T ++VL N CS ++ P+T R HQ+RV
Sbjct: 194 GLRKNTLKSG--ERVVRVDNV---EGKPSHTRFKVL-ERFNECSLVQASPVTGRTHQIRV 247
Query: 381 HCAEALGTPIVGDYKYG 397
H + G PI D KYG
Sbjct: 248 H-TQCKGHPIACDDKYG 263
>gi|419828190|ref|ZP_14351681.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-1A2]
gi|419833112|ref|ZP_14356573.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-61A2]
gi|422918707|ref|ZP_16953008.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-02A1]
gi|423779957|ref|ZP_17714041.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-55C2]
gi|423839952|ref|ZP_17717790.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-59A1]
gi|423867669|ref|ZP_17721463.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-60A1]
gi|423999268|ref|ZP_17742461.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-02C1]
gi|424011287|ref|ZP_17754155.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-55B2]
gi|424021111|ref|ZP_17760881.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-59B1]
gi|424626325|ref|ZP_18064775.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-50A1]
gi|424627220|ref|ZP_18065584.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-51A1]
gi|424631015|ref|ZP_18069238.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-52A1]
gi|424641833|ref|ZP_18079705.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-56A1]
gi|424646349|ref|ZP_18084077.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-57A1]
gi|443525148|ref|ZP_21091344.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-78A1]
gi|341634357|gb|EGS59117.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-02A1]
gi|408009908|gb|EKG47789.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-50A1]
gi|408021306|gb|EKG58570.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-56A1]
gi|408029089|gb|EKG65915.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-52A1]
gi|408040945|gb|EKG77090.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-57A1]
gi|408061015|gb|EKG95611.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-51A1]
gi|408623263|gb|EKK96217.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-1A2]
gi|408638663|gb|EKL10550.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-55C2]
gi|408647350|gb|EKL18878.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-60A1]
gi|408647993|gb|EKL19430.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-59A1]
gi|408650436|gb|EKL21711.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-61A2]
gi|408849657|gb|EKL89670.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-02C1]
gi|408864985|gb|EKM04398.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-59B1]
gi|408870852|gb|EKM10117.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-55B2]
gi|443456511|gb|ELT20182.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-78A1]
Length = 559
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 415
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 416 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 460
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 461 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 512
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 513 HLGLNAPIVGDDLYG 527
>gi|297579761|ref|ZP_06941688.1| ribosomal large chain pseudouridine synthase A [Vibrio cholerae
RC385]
gi|297535407|gb|EFH74241.1| ribosomal large chain pseudouridine synthase A [Vibrio cholerae
RC385]
Length = 570
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 369 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 426
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 427 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 471
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 472 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 523
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 524 HLGLNAPIVGDDLYG 538
>gi|203287491|ref|YP_002222506.1| ribosomal large subunit pseudouridine synthase D [Borrelia
recurrentis A1]
gi|201084711|gb|ACH94285.1| ribosomal large subunit pseudouridine synthase D [Borrelia
recurrentis A1]
Length = 326
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 101/202 (50%), Gaps = 35/202 (17%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALA------AAALSYDYNEG---PKLVHRL 255
+ Y D ++V+ KP + HL + N + + + L Y + E P +VHRL
Sbjct: 86 ILYEDINVIVIEKPQGIL--SHLGISNLENTVVNFLLHHISNLRYKFQENKIRPGIVHRL 143
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+E+SG+++ + E+++ L F K++S+ K Y A+V G+ K
Sbjct: 144 DKETSGVMICAKNLETLNFLFEQF----KNRSVKKV-----------YIAIVKGNFKVDS 188
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
GII + + D ++ + +NSG + A+TEY+VL M N S + L+P T R
Sbjct: 189 GIIDTFIDR---DRYDRKKFTVHKNSG----KRALTEYKVLISMKN-YSLVVLQPKTGRT 240
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH + L PI+GD Y
Sbjct: 241 HQLRVHM-KYLNHPILGDDIYS 261
>gi|449060585|ref|ZP_21738219.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae hvKP1]
gi|448873719|gb|EMB08798.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae hvKP1]
Length = 317
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRVKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALSEVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVSQEGKPSETRFKVEERYEFATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>gi|422308728|ref|ZP_16395870.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1035(8)]
gi|423938912|ref|ZP_17732397.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE-40]
gi|423968729|ref|ZP_17735946.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE-46]
gi|408616747|gb|EKK89890.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
CP1035(8)]
gi|408664693|gb|EKL35523.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE-40]
gi|408667293|gb|EKL38043.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE-46]
Length = 559
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 415
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 416 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 460
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 461 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 512
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 513 HLGLNAPIVGDDLYG 527
>gi|431929968|ref|YP_007243014.1| RluA family pseudouridine synthase [Thioflavicoccus mobilis 8321]
gi|431828271|gb|AGA89384.1| pseudouridine synthase, RluA family [Thioflavicoccus mobilis 8321]
Length = 317
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 41/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP +++ + E RI +P G P E +
Sbjct: 47 GEVRVNKGRVKPEYRLRVGD---------------EVRIPPLRRPVPDGA-PPPLREAAW 90
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ + Y D+ +LV++KP + + G + + + L AA E LVHRLDR++S
Sbjct: 91 IEGAILYEDAQVLVIDKPAGLAVHGGSGLSHGLIELLRAARPAQELE---LVHRLDRDTS 147
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ + + ++ L L D +A+ +RY AL++G + + A
Sbjct: 148 GCLLVSKRRSALRELHRLLRD---------------KAVDKRYLALLVGRLPRAEVTVEA 192
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L K +L G ER++ + ++ R L G + +E + +T R HQ+RV
Sbjct: 193 ALRKNVLQGG--ERVVRVDEVDGKPARTCFRRLRSL----PGATLVEAQLVTGRTHQIRV 246
Query: 381 HCAEALGTPIVGDYKYG 397
H A LG P+ GD KYG
Sbjct: 247 HAAH-LGLPLAGDEKYG 262
>gi|402781395|ref|YP_006636941.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|402542282|gb|AFQ66431.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae 1084]
Length = 308
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 43 KRVKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALSEVILYEDDHIL 94
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 95 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 142
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 143 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 187
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 188 KNILQSG--ERIVRVSQEGKPSETRFKVEERYEFATLVRCS-----PVTGRTHQIRVHTQ 240
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 241 YA-GHPIAFDDRYG 253
>gi|419836913|ref|ZP_14360353.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-46B1]
gi|421343713|ref|ZP_15794117.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-43B1]
gi|421355352|ref|ZP_15805683.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE-45]
gi|423734355|ref|ZP_17707568.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-41B1]
gi|424008639|ref|ZP_17751587.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-44C1]
gi|395942280|gb|EJH52957.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-43B1]
gi|395950022|gb|EJH60641.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE-45]
gi|408631200|gb|EKL03759.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-41B1]
gi|408857463|gb|EKL97151.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-46B1]
gi|408865425|gb|EKM04828.1| RNA pseudouridylate synthase family protein [Vibrio cholerae
HC-44C1]
Length = 559
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 415
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 416 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 460
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 461 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 512
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 513 HLGLNAPIVGDDLYG 527
>gi|384422624|ref|YP_005631983.1| Pseudouridylate synthase, 23S RNA-specific [Vibrio cholerae
LMA3984-4]
gi|327485332|gb|AEA79738.1| Pseudouridylate synthase, 23S RNA-specific [Vibrio cholerae
LMA3984-4]
Length = 559
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 415
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 416 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 460
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 461 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 512
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 513 HLGLNAPIVGDDLYG 527
>gi|407004108|gb|EKE20558.1| hypothetical protein ACD_7C00527G0001 [uncultured bacterium]
Length = 322
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 242 SYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQ 301
+Y + P +VHRLD+E+SG+L++ + +S +F K K+++K
Sbjct: 133 TYSFQLRPGIVHRLDKETSGILIIAKNIKSFLEFKTMF----KEKTIAK----------- 177
Query: 302 RYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMIN 361
+Y A+ G P E+ G I PL++ +T +A +EA+T Y V+ +
Sbjct: 178 KYLAISYGIPLERTGAIDKPLARTTNYRKQT----IAGKRTKTKIREALTNYEVIKDLGE 233
Query: 362 GCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
S IE+ P T R HQ+RVH + A+G PIVGD Y
Sbjct: 234 NFSLIEVSPQTGRTHQIRVHLS-AIGHPIVGDNLY 267
>gi|380817330|gb|AFE80539.1| RNA pseudouridylate synthase domain-containing protein 4 isoform a
[Macaca mulatta]
Length = 377
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 62/289 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D+ ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDNNLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWEKDMAHQVQELFR---------------TRQVVKKYWAITVRVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +D+GK ++ ++N+ Q A+T Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDNGKMVKMRHSRNA-----QVAVTRYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
KL GL+ K + LHLH ++L + P L S+ + +L+
Sbjct: 306 KKL----GLEQSKARYIP----LHLHAQQL----ILPALGSRKEDLNLV 342
>gi|91792374|ref|YP_562025.1| pseudouridine synthase [Shewanella denitrificans OS217]
gi|91714376|gb|ABE54302.1| pseudouridine synthase [Shewanella denitrificans OS217]
Length = 229
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 29/201 (14%)
Query: 205 VKYRDSAILVLNKPPKV-PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y D AIL ++KP + L G P+ ++D++ L D+ + +L+HRLD +SG++
Sbjct: 24 ILYEDEAILAIDKPSGLLSLSGKNPL--NLDSVHYR-LVQDFADA-RLLHRLDFGTSGII 79
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ R K LLT F + + +K+ Y AL++G G+I AP++
Sbjct: 80 LVARNKHINGLLTQQFQNRSVTKT---------------YQALLMGKLSTDSGVIDAPIA 124
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM-INGCSWIELRPLTCRKHQLRVHC 382
K D R+ + + G + AMTEY+VL S ++ P+T R HQLR+H
Sbjct: 125 K---DAALFPRLKICELEG----KSAMTEYKVLSYCEQTDLSRVQFTPITGRTHQLRLH- 176
Query: 383 AEALGTPIVGDYKYGWFVHRR 403
++ LG PI+G YG V R
Sbjct: 177 SQHLGHPILGCDLYGGIVDGR 197
>gi|312874385|ref|ZP_07734416.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2052A-d]
gi|311090151|gb|EFQ48564.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2052A-d]
Length = 307
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 29/151 (19%)
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
P ++ RLDR++SGL+L+G K +V+ + SD K +++ K Y A+V
Sbjct: 139 PHIITRLDRDTSGLVLVG--KNAVAHARFNVSD--KQRTIKK------------YHAIVH 182
Query: 309 G--SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
G SP + QG+I AP+ K D +R I+ E +E++T+YRV+ + G S +
Sbjct: 183 GNFSPSQLQGVIDAPIGK---KDDPVKRYIM------EGGKESVTKYRVI-KQVAGASLV 232
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
EL+ LT R HQ+RVH + LG P+ GD+ YG
Sbjct: 233 ELQLLTGRTHQIRVHM-QYLGHPLFGDHLYG 262
>gi|168187890|ref|ZP_02622525.1| hypothetical RNA pseudouridine synthase YhcT [Clostridium botulinum
C str. Eklund]
gi|169294254|gb|EDS76387.1| hypothetical RNA pseudouridine synthase YhcT [Clostridium botulinum
C str. Eklund]
Length = 301
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 44/236 (18%)
Query: 207 YRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSY----DYNEGPKLVHRLDRES 259
Y D I+V+NKP + P K HL L+ L Y + N +LV+RLD ++
Sbjct: 87 YEDEDIIVINKPKAIVVHPTKRHLN-----GTLSNGVLYYFKEKNENSIVRLVNRLDMDT 141
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGL+L+ + +S + S+ + K + +RY A+V G+ +EK G+I
Sbjct: 142 SGLVLIAKNA---------YSHMALSRDMQK------DDFIKRYLAIVHGNLEEKSGVID 186
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
P+ +V +G +R+I E Q+++T ++V+ N IEL T R HQ+R
Sbjct: 187 KPIYRV--GEGTLKRVI------DERGQKSITRFKVIESYEN-ADLIELTLETGRTHQIR 237
Query: 380 VHCAEALGTPIVGDYKYG----WFVHRRWKQMPRVDI-EPTSGKPYKLRR--PDGL 428
VH + ++G PI GD YG ++ R+ ++ I P G+ KL+ PD +
Sbjct: 238 VHLS-SIGHPIYGDALYGKEEHEYIDRQALHAYKLQIPHPKDGRILKLQSDLPDDM 292
>gi|417823035|ref|ZP_12469633.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE48]
gi|340049165|gb|EGR10081.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE48]
Length = 559
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 415
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 416 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 460
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 461 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 512
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 513 HLGLNAPIVGDDLYG 527
>gi|309808775|ref|ZP_07702661.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
01V1-a]
gi|308168011|gb|EFO70143.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
01V1-a]
Length = 302
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 29/151 (19%)
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
P ++ RLDR++SGL+L+G K +V+ + SD K +++ K Y A+V
Sbjct: 134 PHIITRLDRDTSGLVLVG--KNAVAHARFNVSD--KQRTIKK------------YHAIVH 177
Query: 309 G--SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
G SP + QG+I AP+ K D +R I+ E +E++T+YRV+ + G S +
Sbjct: 178 GNFSPSQLQGVIDAPIGK---KDDPVKRYIM------EGGKESVTKYRVI-KQVAGASLV 227
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
EL+ LT R HQ+RVH + LG P+ GD+ YG
Sbjct: 228 ELQLLTGRTHQIRVHM-QYLGHPLFGDHLYG 257
>gi|402698990|ref|ZP_10846969.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas fragi
A22]
Length = 319
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 124/257 (48%), Gaps = 39/257 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P +
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPVAQ-----GLLQR 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
L + Y D A++VLNKP + + G + + A + D E +LVHRLDR++S
Sbjct: 93 LEAAIVYEDKALIVLNKPAGIAVHGGSGLTFGVIE-AFRQMRPDAKE-LELVHRLDRDTS 150
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GLL++ + + S+L L + + + + +RY ALV G+ + A
Sbjct: 151 GLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGNWAASIKQVRA 195
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
PL K L G ER++ G +E++T ++VL + + IE +P+T R HQ+RV
Sbjct: 196 PLMKSNLRSG--ERMVEVNEEG----KESVTVFKVLRRFGDFATMIEAKPITGRTHQIRV 249
Query: 381 HCAEALGTPIVGDYKYG 397
H A G I GD KYG
Sbjct: 250 HTLHA-GHCIAGDTKYG 265
>gi|442743095|ref|YP_007374399.1| RluA family pseudouridine synthase [Candidatus Uzinura diaspidicola
str. ASNER]
gi|442739163|gb|AGC66859.1| RluA family pseudouridine synthase [Candidatus Uzinura diaspidicola
str. ASNER]
Length = 311
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 56/260 (21%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN--------EGPKLVHRLD 256
+ Y D ++V+NKP + + P + + A A+ Y N E LVHRLD
Sbjct: 82 IIYEDDVLVVINKPSGLAVH---PGYGNYKATLLHAIKYYLNKIGIVKIPERIGLVHRLD 138
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E+SGLLL+ + S+ LT+ F ++Y+RY ALV G+ E G
Sbjct: 139 KETSGLLLIAKNDFSLQHLTYQF---------------FTRSVYRRYLALVWGNL-EGYG 182
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
I + + L+D + E S + + ++T Y+VL + N + + R T R H
Sbjct: 183 TIKGNIGRSLIDRKRMEIF-----SDATSGKHSVTHYKVLEKL-NIVTLVSCRIDTGRTH 236
Query: 377 QLRVHCAEALGTPIVGDYKY------------GWFVHRRWKQMPRVDIEPTSGKPYKLRR 424
Q+R H LG PI D Y G F+H + + I P +GKP
Sbjct: 237 QIRTHFTN-LGNPIFNDPMYGGRNKNCLSILQGQFLHAQ----SFIFIHPITGKPMHFEV 291
Query: 425 P------DGLDVQKGSVLSK 438
P + L++ + S++ +
Sbjct: 292 PLSKDMYEVLEILRNSIIQR 311
>gi|424660035|ref|ZP_18097283.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE-16]
gi|408051128|gb|EKG86242.1| RNA pseudouridylate synthase family protein [Vibrio cholerae HE-16]
Length = 559
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 415
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 416 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 460
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 461 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 512
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 513 HLGLNAPIVGDDLYG 527
>gi|260769549|ref|ZP_05878482.1| pseudouridylate synthase LSU rRNA-specific [Vibrio furnissii CIP
102972]
gi|260614887|gb|EEX40073.1| pseudouridylate synthase LSU rRNA-specific [Vibrio furnissii CIP
102972]
Length = 558
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 98/200 (49%), Gaps = 27/200 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + + +S AL + EGP ++HRLD +SGLL+
Sbjct: 357 IVYQDEAIVVINKPAEFLSVPGVNIKDS--ALTRLEQQFPEVEGPFVLHRLDMSTSGLLV 414
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +KSL K + + +RY AL+ G +G I PL +
Sbjct: 415 FALTRRA-------------NKSLQKQF--ITRGVEKRYVALLSGEIAHGEGCITLPL-R 458
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
LDD + + E + A T ++ +G G + + L P T R HQLRVHCA
Sbjct: 459 PDLDDRPRQMVCF------EHGKAAETYWQTIGTE-QGRTRVYLFPKTGRTHQLRVHCAH 511
Query: 385 ALG--TPIVGDYKYGWFVHR 402
A G TPI+GD YG +R
Sbjct: 512 AQGFNTPILGDDLYGEKANR 531
>gi|383422273|gb|AFH34350.1| RNA pseudouridylate synthase domain-containing protein 4 isoform a
[Macaca mulatta]
Length = 377
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 62/289 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D+ ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDNNLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFR---------------TRQVVKKYWAITVRVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +D+GK ++ ++N+ Q A+T Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDNGKMVKMRHSRNA-----QVAVTRYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
KL GL+ K + LHLH ++L + P L S+ + +L+
Sbjct: 306 KKL----GLEQSKARYIP----LHLHAQQL----ILPALGSRKEDLNLV 342
>gi|308049100|ref|YP_003912666.1| ribosomal large subunit pseudouridine synthase C [Ferrimonas
balearica DSM 9799]
gi|307631290|gb|ADN75592.1| ribosomal large subunit pseudouridine synthase C [Ferrimonas
balearica DSM 9799]
Length = 320
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 32/222 (14%)
Query: 178 RISKRYDTI-PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDA 235
R+S+R +T+ PS L +++ L + Y D +LV+NKP + + G ++ ++A
Sbjct: 76 RVSERDETVAPSAKL----EKVAQLESQIVYEDKVMLVINKPSGIAVHGGSGINFGVIEA 131
Query: 236 LAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDA 295
L A + E LVHRLDR +SGLL++ + + ++ L D + K++ K
Sbjct: 132 LRALRPNERQLE---LVHRLDRATSGLLMVAKRRSALKHL----QDQLREKTMRK----- 179
Query: 296 CEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRV 355
+Y ALV G K + APL K L G ER++ +G + + T +R+
Sbjct: 180 ------QYLALVKGQWNPKTRAVQAPLLKNTLGTG--ERLVRVDAAG----KPSETRFRI 227
Query: 356 LGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ G + +E P+T R HQ+RVH A G PI D +YG
Sbjct: 228 VENFAEG-TLVECSPITGRTHQIRVHTQHA-GHPIACDERYG 267
>gi|429886395|ref|ZP_19367954.1| Ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
PS15]
gi|429226724|gb|EKY32804.1| Ribosomal large subunit pseudouridine synthase A [Vibrio cholerae
PS15]
Length = 559
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 358 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 415
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 416 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 460
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 461 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 512
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 513 HLGLNAPIVGDDLYG 527
>gi|390559262|ref|ZP_10243614.1| pseudouridylate synthase [Nitrolancetus hollandicus Lb]
gi|390174189|emb|CCF82907.1| pseudouridylate synthase [Nitrolancetus hollandicus Lb]
Length = 308
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 134/301 (44%), Gaps = 68/301 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
GD +V KP R++ + +E I LP +++ Y +P
Sbjct: 43 GDVYVNGEVAKPARRVHLGDRVE----ILLPPVEAPPKLTPAYVPVP------------- 85
Query: 201 LRRLVKYRDSAILVLNKPPKV---PLKGHLPVHNSM-DALAA--AALSYDYNEGPKLVHR 254
+ + D ++V NKPP + P GH H ++ +AL A L E P +VHR
Sbjct: 86 ----IVFEDENVIVFNKPPGMVTHPAPGH--EHGTLVNALKALRPDLKLTPVERPGVVHR 139
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LD+++SGL+++ + + LF L K W + + +RY LV G E+
Sbjct: 140 LDKDTSGLIVVAKNDAA-----RLF--------LLKQWQE--RDVVKRYLTLVHGVVPEE 184
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+G I+AP+S+ D +R+ + + + A+T +RVL + +E+ T R
Sbjct: 185 EGTINAPISR---DPNNRKRMAV-----VAGGRPAITHFRVLE-RFPDATLLEVTIETGR 235
Query: 375 KHQLRVHCAEALGTPIVGDYKYG----------WFVHRRWKQMPRVDIEPTSGKPYKLRR 424
HQ+RVH +G P+VGD YG F+H + + P SG+P ++
Sbjct: 236 THQIRVHLG-FIGHPVVGDQLYGKRPFRVPVPRQFLHASYLKF----ALPESGQPIEVET 290
Query: 425 P 425
P
Sbjct: 291 P 291
>gi|118361718|ref|XP_001014087.1| RNA pseudouridylate synthase family protein [Tetrahymena
thermophila]
gi|89295854|gb|EAR93842.1| RNA pseudouridylate synthase family protein [Tetrahymena
thermophila SB210]
Length = 881
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 41/258 (15%)
Query: 161 VMEPGARIFLPVSMVEGRIS-KRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPP 219
+++ G I +P S VE + + + + +ID ++++ Y + I++LNK
Sbjct: 44 ILKEGDIIRIPFSFVEKKEQIQNSQKQEQNEIKLDQSQIDKFKQMIIYENKNIIILNKAN 103
Query: 220 KVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLF 279
V +G V ++ + L N+ + HRLD+ +SG+L++ + ++ + LF
Sbjct: 104 GVSCQGGQDVSLNLVTMGQQYLINQTNQKYLVAHRLDKVTSGVLMVPKNQQIAKIYGNLF 163
Query: 280 SDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQ 339
+D KS + + Y ALV SPK + +I+AP ++ ++++ +
Sbjct: 164 ND--KSN------------INKYYIALVRNSPKNFKAMINAP-----IEYSQSKQRAIVS 204
Query: 340 NSGLEASQEAMTEYRVLGP-----------MING----------CSWIELRPLTCRKHQL 378
N E S+ A T Y+VL +IN S +++R RKHQ+
Sbjct: 205 NIIDENSKSAHTHYQVLAQFKMEDKNLAAKIINSEHDYIKDWGDFSLLKIRIQEGRKHQI 264
Query: 379 RVHCAEALGTPIVGDYKY 396
RVH +E TPIVGD +Y
Sbjct: 265 RVHLSEISKTPIVGDARY 282
>gi|344340218|ref|ZP_08771144.1| pseudouridine synthase, RluA family [Thiocapsa marina 5811]
gi|343799876|gb|EGV17824.1| pseudouridine synthase, RluA family [Thiocapsa marina 5811]
Length = 420
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 124/271 (45%), Gaps = 64/271 (23%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V +G++K +++T +++ P R L + V +P+ L P A+
Sbjct: 145 GEVRVNKGRVKASHRLRTGDLVRIPPVRTALAETPVR---------VPASRLAPLAEA-- 193
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK--------- 250
V Y D +LV++KP L VH + LSY E +
Sbjct: 194 -----VLYEDERLLVIDKP------AGLAVHG------GSGLSYGLIESLRELRPGRELE 236
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG L++ + + ++ L L + M +RY AL++G
Sbjct: 237 LVHRLDRDTSGCLVISKRRSALRELHELIRE---------------GGMDKRYLALIVGE 281
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERII-LAQNSGLEASQEAMTEYRVLGPM---INGCSWI 366
+ + + APL K LL G ER++ + Q+ G + A T +R LG + +
Sbjct: 282 LERAKVNVDAPLKKNLLQGG--ERMVQVDQDDG----KPARTVFRRLGRFRAESGVLTLV 335
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
E +T R HQ+RVH A LGTP+ GD KYG
Sbjct: 336 EAELITGRTHQIRVHAAH-LGTPLAGDPKYG 365
>gi|262191904|ref|ZP_06050072.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae CT
5369-93]
gi|262032204|gb|EEY50774.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae CT
5369-93]
Length = 474
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +HRLD +SGLL+
Sbjct: 273 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHRLDMSTSGLLV 330
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 331 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 375
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 376 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 427
Query: 385 ALG--TPIVGDYKYG 397
LG PIVGD YG
Sbjct: 428 HLGLNAPIVGDDLYG 442
>gi|162147092|ref|YP_001601553.1| RNA pseudouridine synthase [Gluconacetobacter diazotrophicus PAl 5]
gi|209544152|ref|YP_002276381.1| pseudouridine synthase [Gluconacetobacter diazotrophicus PAl 5]
gi|161785669|emb|CAP55240.1| putative RNA pseudouridine synthase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531829|gb|ACI51766.1| pseudouridine synthase [Gluconacetobacter diazotrophicus PAl 5]
Length = 227
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 34/197 (17%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V +RD+ +V++KPP +P+ G V +S L+ A +GP L HRLDR++S
Sbjct: 14 VLFRDNRFIVIDKPPGLPVHPGPSGGPSVEDSFPLLSRRA------DGPWLAHRLDRDTS 67
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ + K L+ A + + YWA+V G P G +
Sbjct: 68 GCLLIA---------------LRKQALLAAQAAFAAGQVRKTYWAVVQGRPAADSGTVAM 112
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
+++ D + R++ A + Q + T++RVL SW+EL LT R HQ R+
Sbjct: 113 TMAR--HSDRQGWRMVAAPDG-----QASRTDWRVLA-SDGRESWLELHLLTGRTHQARL 164
Query: 381 HCAEALGTPIVGDYKYG 397
HCA +LG PI+GD YG
Sbjct: 165 HCA-SLGCPILGDPVYG 180
>gi|422013857|ref|ZP_16360475.1| 23S rRNA pseudouridylate synthase C [Providencia burhodogranariea
DSM 19968]
gi|414102369|gb|EKT63962.1| 23S rRNA pseudouridylate synthase C [Providencia burhodogranariea
DSM 19968]
Length = 319
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 119/268 (44%), Gaps = 61/268 (22%)
Query: 141 GDSFVEQGQMKPIRKIKT-NEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V +G++KP K+ ++V P PV R+++R + S L D++
Sbjct: 44 GEVRVNKGRIKPEYKLAAGDQVRVP------PV-----RVAEREEAPVSAKL----DKVA 88
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK--------- 250
L + Y D +ILV+NKP + G + LS+ EG +
Sbjct: 89 ALADCILYEDDSILVINKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFL 136
Query: 251 -LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
LVHRLDR++SG+LL+ + + ++ L + M + Y ALV G
Sbjct: 137 ELVHRLDRDTSGILLVAKKRSALRALHEQLR---------------LKQMQKDYMALVRG 181
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
+ + ++ APL K +L G ERI+ + G + E R + + ++
Sbjct: 182 NWQSHTKVVQAPLLKNILQSG--ERIVRVNSEGKPSETRFKVEER-----FDNATLVKAS 234
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T R HQ+RVH A G PI D +YG
Sbjct: 235 PVTGRTHQIRVHTLHA-GHPIAFDNRYG 261
>gi|206900407|ref|YP_002249968.1| ribosomal large subunit pseudouridine synthase C [Dictyoglomus
thermophilum H-6-12]
gi|206739510|gb|ACI18568.1| ribosomal large subunit pseudouridine synthase C [Dictyoglomus
thermophilum H-6-12]
Length = 226
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 28/203 (13%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY----NEGPKLVHR 254
D+L V Y D+ +LV+NKP + ++G + ++ ++ A + Y N +VHR
Sbjct: 3 DFLNLEVIYEDNHLLVVNKPAGILVQGDITKSTTLLEISKAYIKEKYKKPGNVFLAIVHR 62
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
LD+ SG+++ R +S L+ F + + + Y AL G K K
Sbjct: 63 LDKPVSGVVIFARNSKSAGRLSEAFRE---------------RKVEKEYIALCKGIFKVK 107
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
+G I S+ LL K + ++Q+ + S+ A+T Y VL N S + L P T R
Sbjct: 108 KGTI----SESLLWVEKERKARVSQD---DKSKNAITHYEVLEEFKN-LSLVRLIPETGR 159
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
KHQLR H + +G PI+GD KYG
Sbjct: 160 KHQLRAHLS-YIGHPILGDEKYG 181
>gi|167623698|ref|YP_001673992.1| RluA family pseudouridine synthase [Shewanella halifaxensis
HAW-EB4]
gi|167353720|gb|ABZ76333.1| pseudouridine synthase, RluA family [Shewanella halifaxensis
HAW-EB4]
Length = 319
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 121/258 (46%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K+ +++ P R VS EGR PS L ++
Sbjct: 47 GEVRVNKKRIKPEYKLADGDIVRIPPVR----VSESEGRPG------PSAKLT----KVS 92
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D ++VLNKP + + G V ++A+ + + E LVHRLD+E
Sbjct: 93 QLEERILFEDKYLIVLNKPSGIAVHGGSGVEFGVIEAMRSLRTQQKFLE---LVHRLDKE 149
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G + +I
Sbjct: 150 TSGVLLIAKKR---SALRHLHDQLRYKK------------MQKDYVALVRGEWQSHDKVI 194
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K+ L G ERI+ G +E+ T +++L + + ++ P+T R HQ+
Sbjct: 195 KAPLLKLTLKSG--ERIVRVNKEG----KESETRFKIL-QRYSDSTLVQASPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 248 RVHCQFA-GHPIACDEKY 264
>gi|406881564|gb|EKD29593.1| hypothetical protein ACD_78C00346G0006, partial [uncultured
bacterium (gcode 4)]
Length = 324
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 38/219 (17%)
Query: 188 SGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY-- 245
+GT D+ D + + D IL++NK P + P L+ A DY
Sbjct: 83 AGTSKQRLDQKDII-----HEDGEILIVNKNPGTIVH---PGDFKTTDLSLIAQVQDYLG 134
Query: 246 ------NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAM 299
P L+HR+D+++SG++++ +TK S+ + L+ ++ E +
Sbjct: 135 ENFSSLTFKPSLIHRIDKDTSGIVMIAKTKPSLDFM------------LNALQSNKIEKV 182
Query: 300 YQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
Y A+ +G+P E +G+I L + L++ + E I+ + G Q A+T Y+VL
Sbjct: 183 ---YLAVCLGTPPETRGVIRRKLRR--LENAERENKIIIDDEG---GQTAVTHYKVLETG 234
Query: 360 ING-CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
I+G S +E T R HQ+RVH A ++G P++GD YG
Sbjct: 235 IHGKYSLVECVLETGRMHQIRVHLA-SIGCPVLGDTTYG 272
>gi|387792931|ref|YP_006257996.1| 23S RNA-specific pseudouridylate synthase [Solitalea canadensis DSM
3403]
gi|379655764|gb|AFD08820.1| 23S RNA-specific pseudouridylate synthase [Solitalea canadensis DSM
3403]
Length = 571
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 29/196 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDAL-AAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y D A++V+NKP + +P N D++ L Y GP +VHRLD +SG++
Sbjct: 370 IVYEDEALVVVNKPAEFL---SVPGKNVQDSVYERMRLKYPNATGPLIVHRLDMSTSGIM 426
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ +TKES +L F +++ K RY AL+ G + ++G I PL
Sbjct: 427 LVAKTKESHKVLQEQFI----KRTIKK-----------RYIALLDGVVESEEGFIDLPL- 470
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
+V LD+ + + E + A T++ V+ N + I P+T R HQLRVH A
Sbjct: 471 RVDLDNRPHQLVC------YEYGKPACTKWEVV-ERKNNKTKIHFYPITGRTHQLRVHAA 523
Query: 384 EALG--TPIVGDYKYG 397
+G +PIVGD YG
Sbjct: 524 HPMGLNSPIVGDDLYG 539
>gi|266624507|ref|ZP_06117442.1| pseudouridylate synthase [Clostridium hathewayi DSM 13479]
gi|288863645|gb|EFC95943.1| pseudouridylate synthase [Clostridium hathewayi DSM 13479]
Length = 320
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 37/212 (17%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG-------- 248
E+ + + Y D IL++NKP + + +S ++L + Y + G
Sbjct: 78 EVKKVNLQIIYEDDHILLVNKPSGMLSQ---KAKDSDESLVEYIIDYLVSSGQLSTEQLK 134
Query: 249 ---PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
P + +RLDR +SGL++ G++ + +++ +F D ++++ Y
Sbjct: 135 SFRPSVCNRLDRNTSGLVVAGKSLPGLQIMSAVFKD---------------RSLHKYYRC 179
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
+V GS +KQ +I L K D T ++ + + +E S MTEY LG GC+
Sbjct: 180 VVKGSVTDKQ-VITGFLKK----DSVTNQVTITA-AEVEGSVPVMTEYEPLGQA-EGCTL 232
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ ++ +T R HQ+R H A ++G PI+GD+KYG
Sbjct: 233 LSVKLITGRTHQIRAHLA-SIGHPILGDFKYG 263
>gi|258622273|ref|ZP_05717299.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|424808849|ref|ZP_18234238.1| ribosomal large chain pseudouridine synthase A [Vibrio mimicus
SX-4]
gi|258585597|gb|EEW10320.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|342323801|gb|EGU19584.1| ribosomal large chain pseudouridine synthase A [Vibrio mimicus
SX-4]
Length = 559
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 102/209 (48%), Gaps = 33/209 (15%)
Query: 192 NPNAD-EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
NP AD EI + Y+D AI+V+NKP + + VH+S+ L + EG
Sbjct: 349 NPAADKEIS-----IVYQDEAIVVVNKPAEFLSVPGVHVHDSV--LTRLQAQFSEAEGVF 401
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
+HRLD +SGLL+ T+ + +K L K + A+ +RY A++ G+
Sbjct: 402 ALHRLDMSTSGLLVFALTRRA-------------NKHLQKQF--ITRAVEKRYVAMLEGT 446
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ QG I PL L DD +++ Q + A+T + + + G + + L P
Sbjct: 447 LADVQGEIALPLCGDL-DDRPRQKVCWQQG------KPALTHWETVA-VEQGRTRVYLYP 498
Query: 371 LTCRKHQLRVHCAEALG--TPIVGDYKYG 397
T R HQLRVHCA LG PIVGD YG
Sbjct: 499 HTGRTHQLRVHCAHHLGLNCPIVGDDLYG 527
>gi|355567206|gb|EHH23585.1| hypothetical protein EGK_07073 [Macaca mulatta]
gi|355752781|gb|EHH56901.1| hypothetical protein EGM_06396 [Macaca fascicularis]
Length = 377
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 62/289 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D+ ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDNNLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFR---------------TRQVVKKYWAITVRVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +D+GK ++ ++N+ Q A+T Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDNGKMVKMRHSRNA-----QVAVTRYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
KL GL+ K + LHLH ++L + P L S+ + +L+
Sbjct: 306 KKL----GLEQSKARYIP----LHLHAQQL----ILPALGSRKEDLNLV 342
>gi|329894956|ref|ZP_08270755.1| Ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium IMCC3088]
gi|328922685|gb|EGG30020.1| Ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium IMCC3088]
Length = 321
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 45/210 (21%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK------- 250
+D + R V Y D+ +++NKP + + G + L Y E +
Sbjct: 93 LDSVERGVLYEDADFMIINKPSGLAVHG------------GSGLKYGLIEVLRQLRPEAR 140
Query: 251 ---LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
LVHRLDR++SG +++ + ++ L L D + L+K RY ALV
Sbjct: 141 RLELVHRLDRDTSGCIMIAKKNSALRHLHALLRD----RKLTK-----------RYHALV 185
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE 367
G Q ++ APL K L G ERI+ G Q+A TE+ L G + +E
Sbjct: 186 FGKWPRAQRLVDAPLKKFALASG--ERIVRVNEEG----QKAKTEFATLN-RYPGLTLVE 238
Query: 368 LRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+P+T R HQ+RVH A LG ++GD KY
Sbjct: 239 AKPITGRTHQIRVHAAH-LGHCLLGDDKYA 267
>gi|312127537|ref|YP_003992411.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
hydrothermalis 108]
gi|311777556|gb|ADQ07042.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
hydrothermalis 108]
Length = 293
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 94/198 (47%), Gaps = 36/198 (18%)
Query: 205 VKYRDSAILVLNKP---PKVPLKGHLPVHNSMDALAAAALSY--DYNEGPKLVHRLDRES 259
+ Y D+ L +NKP P P KGH D +A Y N +++RLD+E+
Sbjct: 79 ILYEDNFFLFVNKPSGLPSHPSKGHY-----FDTIANYVEYYLNSKNLTSHIINRLDKET 133
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG+++ + S++++ F K+ Y A+V G +K G+I
Sbjct: 134 SGIVVFAKNSYFHSIVSYEFEKRRVDKT---------------YIAIVHGRLTKKSGLIE 178
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
P+ + DDG I G AS T Y V+ N S ++L+P+T R HQLR
Sbjct: 179 KPIKRS--DDGIKREI---HQDGSFAS----TYYEVIDTFEN-FSVLKLKPITGRTHQLR 228
Query: 380 VHCAEALGTPIVGDYKYG 397
VH + ++G PIVGDY YG
Sbjct: 229 VHLS-SIGHPIVGDYIYG 245
>gi|152969638|ref|YP_001334747.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|329999760|ref|ZP_08303517.1| rRNA pseudouridylate synthase [Klebsiella sp. MS 92-3]
gi|378978122|ref|YP_005226263.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419762714|ref|ZP_14288960.1| rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|421909211|ref|ZP_16339033.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|425077274|ref|ZP_18480377.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425080908|ref|ZP_18484005.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425087907|ref|ZP_18491000.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425090970|ref|ZP_18494055.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428150126|ref|ZP_18997915.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
gi|150954487|gb|ABR76517.1| 23S rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|328538217|gb|EGF64365.1| rRNA pseudouridylate synthase [Klebsiella sp. MS 92-3]
gi|364517533|gb|AEW60661.1| 23S rRNA pseudouridylate synthase C [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397744209|gb|EJK91421.1| rRNA pseudouridylate synthase [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|405592983|gb|EKB66435.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405604631|gb|EKB77752.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405604718|gb|EKB77825.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405613127|gb|EKB85875.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|410117055|emb|CCM81658.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|427539916|emb|CCM94053.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 331
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 66 KRVKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALSEVILYEDDHIL 117
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 118 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 165
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 166 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 210
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 211 KNILQSG--ERIVRVSQEGKPSETRFKVEERYEFATLVRCS-----PVTGRTHQIRVHTQ 263
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 264 YA-GHPIAFDDRYG 276
>gi|375260241|ref|YP_005019411.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca KCTC 1686]
gi|365909719|gb|AEX05172.1| 23S rRNA pseudouridylate synthase C [Klebsiella oxytoca KCTC 1686]
Length = 317
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+S++ + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRVKPEYKLEAGDEVRIPPV----RVSEKEEE----AVSPHLQKVAALADVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVNQEGKPSETRFKVEERYTHATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>gi|288936150|ref|YP_003440209.1| pseudouridine synthase [Klebsiella variicola At-22]
gi|290510796|ref|ZP_06550166.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
1_1_55]
gi|288890859|gb|ADC59177.1| pseudouridine synthase, RluA family [Klebsiella variicola At-22]
gi|289777512|gb|EFD85510.1| ribosomal large subunit pseudouridine synthase C [Klebsiella sp.
1_1_55]
Length = 331
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 66 KRVKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALSEVILYEDDHIL 117
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 118 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 165
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 166 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 210
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 211 KNILQSG--ERIVRVSQEGKPSETRFKVEERYEFATLVRCS-----PVTGRTHQIRVHTQ 263
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 264 YA-GHPIAFDDRYG 276
>gi|260597456|ref|YP_003210027.1| 23S rRNA pseudouridylate synthase C [Cronobacter turicensis z3032]
gi|260216633|emb|CBA29938.1| Ribosomal large subunit pseudouridine synthase C [Cronobacter
turicensis z3032]
Length = 333
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++IK +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 68 KRIKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALSDVILYEDDHIL 119
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 120 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 167
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + + APL
Sbjct: 168 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHVKTVQAPLL 212
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 213 KNILQSG--ERIVRVNQEGKPSETRFKVEERFASATLVRCS-----PVTGRTHQIRVHTQ 265
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 266 FA-GHPIAFDDRYG 278
>gi|332288916|ref|YP_004419768.1| 23S rRNA pseudouridylate synthase C [Gallibacterium anatis UMN179]
gi|330431812|gb|AEC16871.1| 23S rRNA pseudouridylate synthase C [Gallibacterium anatis UMN179]
Length = 321
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 40/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +V+ PV RIS++ +T P L+ ++++
Sbjct: 50 GEVRVNKGRIKPEYKLQVGDVVR-----IPPV-----RISEKSNTAP---LSTKLNKVNA 96
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + + + D +L+LNKP + + G + ++AL A + E LVHRLDR++
Sbjct: 97 LEQQILFEDDQLLILNKPSGIAVHGGSGLSFGVIEALRALRPQAKFLE---LVHRLDRDT 153
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG+LL+ + + ++ L + + + + Y ALV G + ++
Sbjct: 154 SGILLVAKKRSALRNLHQQLRE---------------KTIQKDYLALVRGEWQSHCKVVK 198
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ERI+ + G + E R + ++ P+T R HQ+R
Sbjct: 199 APLLKNELSSG--ERIVKVSDQGKPSETRFKVEER-----FKIATLVKASPVTGRTHQIR 251
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G PI D KYG
Sbjct: 252 VHTQYA-GHPIAFDSKYG 268
>gi|124265850|ref|YP_001019854.1| ribosomal large subunit pseudouridine synthase C [Methylibium
petroleiphilum PM1]
gi|124258625|gb|ABM93619.1| ribosomal large subunit pseudouridine synthase C [Methylibium
petroleiphilum PM1]
Length = 320
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
V + D +LV++KP V + G V ++ L A + E LVHRLDRE+SGLL
Sbjct: 82 VVHEDEHLLVIDKPAGVAVHGGSGVSFGVIEQLRRARPQAKFLE---LVHRLDRETSGLL 138
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + +++ L F K+ Y ALV G+ + +I APL
Sbjct: 139 LLAKKRSALTRLQDQFRARETGKT---------------YAALVPGAWPARHKVIDAPLH 183
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K L DG ER + + E Q ++T +V G + +++ T R HQ+RVH A
Sbjct: 184 KYL--DGAGERRVRVTGADDEDGQRSITLVQV-AAAYAGYTLLDVTIKTGRTHQIRVHLA 240
Query: 384 EALGTPIVGDYKYGWFV 400
A G IVGD KYG F
Sbjct: 241 HA-GHAIVGDDKYGDFA 256
>gi|423128587|ref|ZP_17116266.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5250]
gi|376393069|gb|EHT05730.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5250]
Length = 331
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 45/218 (20%)
Query: 190 TLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP 249
++P+ ++ L ++ Y D ILVLNKP + G + LS+ EG
Sbjct: 94 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG------------GSGLSFGVIEGL 141
Query: 250 K----------LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAM 299
+ LVHRLDR++SG+LL+ + + ++ +SL + D + M
Sbjct: 142 RALRPEARFLELVHRLDRDTSGVLLVAKKRSAL-------------RSLHEQLRD--KGM 186
Query: 300 YQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
+ Y ALV G + ++ APL K +L G ERI+ G + E R
Sbjct: 187 QKDYLALVRGQWQSHTKVVQAPLLKNILQSG--ERIVRVNQEGKPSETRFKVEERFTHAT 244
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ CS P+T R HQ+RVH A G PI D +YG
Sbjct: 245 LVRCS-----PVTGRTHQIRVHTQYA-GHPIAFDDRYG 276
>gi|333908045|ref|YP_004481631.1| RluA family pseudouridine synthase [Marinomonas posidonica
IVIA-Po-181]
gi|333478051|gb|AEF54712.1| pseudouridine synthase, RluA family [Marinomonas posidonica
IVIA-Po-181]
Length = 322
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 26/193 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D ++V+NKP + + G + S + + +LVHRLDR++SGL++
Sbjct: 100 IVYEDKGLMVVNKPSGLAVHGGSGL--SFGLVEVVRQMRPQEKFIELVHRLDRDTSGLIM 157
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS-PKEKQGIIHAPLS 323
+ + + + K L A + E + + Y ALV GS PK KQ ++APL
Sbjct: 158 IAKKRAVL-------------KELHTALREK-EGVQKTYLALVYGSWPKRKQQ-VNAPLL 202
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K L G ER++ G +E++T ++++ G S IE P+T R HQ+RVH
Sbjct: 203 KNELKSG--ERVVKVHTDG----KESLTLFKLV-RQFEGYSLIECEPVTGRTHQIRVHTL 255
Query: 384 EALGTPIVGDYKY 396
A G PIVGD KY
Sbjct: 256 HA-GYPIVGDDKY 267
>gi|397657322|ref|YP_006498024.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca E718]
gi|402842908|ref|ZP_10891311.1| rRNA pseudouridylate synthase C [Klebsiella sp. OBRC7]
gi|423102489|ref|ZP_17090191.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5242]
gi|376387965|gb|EHT00666.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5242]
gi|394345788|gb|AFN31909.1| Ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca E718]
gi|402278294|gb|EJU27358.1| rRNA pseudouridylate synthase C [Klebsiella sp. OBRC7]
Length = 331
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+S++ + ++P+ ++ L ++ Y D IL
Sbjct: 66 KRVKPEYKLEAGDEVRIPPV----RVSEKEEE----AVSPHLQKVAALADVILYEDDHIL 117
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 118 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 165
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + ++ APL
Sbjct: 166 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHTKVVQAPLL 210
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 211 KNILQSG--ERIVRVNQEGKPSETRFKVEERYTHATLVRCS-----PVTGRTHQIRVHTQ 263
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 264 YA-GHPIAFDDRYG 276
>gi|365849003|ref|ZP_09389474.1| rRNA pseudouridylate synthase [Yokenella regensburgei ATCC 43003]
gi|364569647|gb|EHM47269.1| rRNA pseudouridylate synthase [Yokenella regensburgei ATCC 43003]
Length = 317
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++IK +E G I +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRIKPEYKLEAGDEIRIPPV----RVAERDEE----AVSPHLQKVAALSDVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + + + M + Y ALV G ++ APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRE--KGMQKDYLALVRGQWSSHTKVVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVSQEGKPSETRFKVEERFAFATLVRCS-----PVTGRTHQIRVHTL 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 HA-GHPIAFDDRYG 262
>gi|262173056|ref|ZP_06040733.1| pseudouridylate synthase LSU rRNA-specific [Vibrio mimicus MB-451]
gi|261890414|gb|EEY36401.1| pseudouridylate synthase LSU rRNA-specific [Vibrio mimicus MB-451]
Length = 559
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 102/209 (48%), Gaps = 33/209 (15%)
Query: 192 NPNAD-EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
NP AD EI + Y+D AI+V+NKP + + VH+S+ L + EG
Sbjct: 349 NPAADKEIS-----IVYQDEAIVVVNKPAEFLSVPGVHVHDSV--LTRLQAQFSEAEGVF 401
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
+HRLD +SGLL+ T+ + ++ L K + A+ +RY A++ G+
Sbjct: 402 ALHRLDMSTSGLLVFALTRRA-------------NRHLQKQF--ITRAVQKRYVAMLEGT 446
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ QG I PL L DD +++ Q + A+T + + + G + + L P
Sbjct: 447 LADAQGEIALPLCGDL-DDRPRQKVCWQQG------KPALTHWETVA-VEQGRTRVYLYP 498
Query: 371 LTCRKHQLRVHCAEALG--TPIVGDYKYG 397
T R HQLRVHCA LG PIVGD YG
Sbjct: 499 HTGRTHQLRVHCAHHLGLNCPIVGDDLYG 527
>gi|15618629|ref|NP_224915.1| pseudouridine synthase [Chlamydophila pneumoniae CWL029]
gi|15836251|ref|NP_300775.1| pseudouridine synthase [Chlamydophila pneumoniae J138]
gi|16752321|ref|NP_444579.1| ribosomal large subunit pseudouridine synthase D [Chlamydophila
pneumoniae AR39]
gi|33242078|ref|NP_877019.1| ribosomal large subunit pseudouridine synthase A [Chlamydophila
pneumoniae TW-183]
gi|384449015|ref|YP_005661617.1| RluA family pseudouridine synthase [Chlamydophila pneumoniae
LPCoLN]
gi|4377023|gb|AAD18858.1| predicted Pseudouridine Synthase [Chlamydophila pneumoniae CWL029]
gi|7188966|gb|AAF37922.1| ribosomal large subunit pseudouridine synthase D [Chlamydophila
pneumoniae AR39]
gi|8979091|dbj|BAA98926.1| pseudouridine synthase [Chlamydophila pneumoniae J138]
gi|33236588|gb|AAP98676.1| ribosomal large subunit pseudouridine synthase A [Chlamydophila
pneumoniae TW-183]
gi|269302507|gb|ACZ32607.1| pseudouridine synthase, RluA family [Chlamydophila pneumoniae
LPCoLN]
Length = 325
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 39/201 (19%)
Query: 207 YRDSAILVLNKPPKV---PLKGHLP---VHNSMDALAAAALSYDYNEGP---KLVHRLDR 257
Y D ILV+NKP + P GH VH + + L ++ E P +VHRLD+
Sbjct: 86 YEDGMILVINKPRDMVVHPAPGHFHGTLVHALLHEIGER-LKEEFPEEPWRPGIVHRLDK 144
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGL++ +T+++ + + LFS +K L K+ Y A+ IG P+
Sbjct: 145 DTSGLIITAKTRQAKKVFSELFS----TKRLKKS-----------YLAVCIGKPRST--T 187
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKH 376
IH +S+ + + E + +Q +EA+T +VL NG S++ L P T R H
Sbjct: 188 IHTHISR--HQNKRKEMTVSSQ------GKEAVTHCQVLA--FNGKLSFVALSPETGRTH 237
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVH + LGTPI+GD YG
Sbjct: 238 QLRVH-MKHLGTPILGDPVYG 257
>gi|404481991|ref|ZP_11017220.1| RluA family pseudouridine synthase [Clostridiales bacterium
OBRC5-5]
gi|404344961|gb|EJZ71316.1| RluA family pseudouridine synthase [Clostridiales bacterium
OBRC5-5]
Length = 340
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 31/252 (12%)
Query: 154 RKIKTNEVMEPGARIFLPVS--MVEGRISKRYDTIPSGTLNPNADE--IDYLRRLVKYRD 209
+K E +EPGA I L S E K+ I P AD+ I+ + Y D
Sbjct: 45 KKADGKERLEPGASIKLWFSDESFEKLSGKKAINIKDIEGKPKADKKSIEAFESYIVYED 104
Query: 210 SAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE----GPKLVHRLDRESSGLLLM 265
+++NKP + + S++ L L +D P + +RLDR +SGL++
Sbjct: 105 ENTVIINKPAGLLSQKSNENDISVNDLLLEYLEFDSKALNTFKPSICNRLDRNTSGLMVC 164
Query: 266 GRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKV 325
G+T E + + L K+K++SK Y ALV G K K G I+A L K
Sbjct: 165 GKTLEGLRVNNELI----KTKAVSKF-----------YLALVKGRVK-KTGSINAWLYK- 207
Query: 326 LLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEA 385
D KT ++ + +N E + TEY VL + + ++ +T + HQ+R H + +
Sbjct: 208 ---DEKTNKVTV-KNKSFEGADFIQTEYEVL-DYFKDATLLLVKLITGKTHQIRAHLS-S 261
Query: 386 LGTPIVGDYKYG 397
+ PI+GD+KYG
Sbjct: 262 ISHPIIGDFKYG 273
>gi|340350205|ref|ZP_08673204.1| ribosomal large subunit pseudouridine synthase A [Prevotella
nigrescens ATCC 33563]
gi|339609117|gb|EGQ13993.1| ribosomal large subunit pseudouridine synthase A [Prevotella
nigrescens ATCC 33563]
Length = 568
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 40/198 (20%)
Query: 243 YDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR 302
++ N+ P +VHRLD +SGLL++ R + + L F K +++ K R
Sbjct: 391 WNENDTPIIVHRLDMATSGLLVVARNRYAHKQLQAQF----KERTIQK-----------R 435
Query: 303 YWALV-------IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRV 355
Y AL+ +G PKE G I PL +LD R ++ +N G + A+T Y++
Sbjct: 436 YVALLSTDLLNRVGLPKE--GTISLPLCADVLD---RPRQMVDRNKG----KTAITHYKI 486
Query: 356 LGPMINGCSW------IELRPLTCRKHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQM 407
+G + S+ +ELRP T R HQLRVHCA E L PI+GD YG R +
Sbjct: 487 IGKIPLHDSYYSEAVKVELRPETGRTHQLRVHCAHSEGLACPILGDTLYGKRADRLYLHA 546
Query: 408 PRVDI-EPTSGKPYKLRR 424
++ PT+GK + ++
Sbjct: 547 EYLEFTHPTTGKRLRFKK 564
>gi|117921007|ref|YP_870199.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
ANA-3]
gi|117613339|gb|ABK48793.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
ANA-3]
Length = 329
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 44/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V + ++KP K++ +V+ PV M E + T PS L+ +
Sbjct: 57 GEVRVNKKRIKPEYKLQIGDVVR-----VPPVRMAE----QDNRTAPSANLS----RVSQ 103
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + + D+ ++VLNKP + + G V + ++AL + + E LVHRLD+++
Sbjct: 104 LEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLE---LVHRLDKDT 160
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQGI 317
SG+LL V K +S K +D + M + Y ALV G + +
Sbjct: 161 SGVLL-----------------VAKKRSALKHMHDQLRYKKMQKDYLALVKGEWSAQDKV 203
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ PL K+ L G ERI+ G + + T ++++ GC+ ++ P+T R HQ
Sbjct: 204 VKQPLLKLTLKSG--ERIVRVNAEG----KPSETRFKIV-QRYQGCTLVQASPVTGRTHQ 256
Query: 378 LRVHCAEALGTPIVGDYKY 396
+RVHC + +G PI D KY
Sbjct: 257 IRVHC-QYMGHPIACDEKY 274
>gi|410031434|ref|ZP_11281264.1| 23S RNA-specific pseudouridylate synthase [Marinilabilia sp. AK2]
Length = 244
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL----VHRLDRESS 260
V Y D+ +LV+NK + ++G ++ A ++ Y + + VHRLDR S
Sbjct: 8 VVYEDNHLLVVNKAAGILVQGDKTKDKTLTDYCKAYIAEKYKKPGAVFLHPVHRLDRPVS 67
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL++ RT + + + +F + +++ YWA+V P E+ G
Sbjct: 68 GLVVFARTSKGLERMMEVFRKRD---------------IHKVYWAIVKKRPDEETG---- 108
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+ L+ D + ++ A + + SQ+A Y+ LG + N +E+RP++ R HQ+RV
Sbjct: 109 KLTHWLVKD-EQRNVVTAYDREVPGSQKAELNYKTLGKL-NDHWLLEVRPISGRPHQIRV 166
Query: 381 HCAEALGTPIVGDYKYGW 398
A ++G PI GD KYG+
Sbjct: 167 QLA-SMGCPIRGDLKYGF 183
>gi|392554983|ref|ZP_10302120.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas undina
NCIMB 2128]
Length = 555
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D +LV+NKP + + + +S+ + + GP +VHRLD +SGLL+
Sbjct: 354 IVYQDDDLLVVNKPAEFLSVPGINIDDSV--YMRIKTQFPHASGPLIVHRLDMSTSGLLM 411
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ K K+L K + + ++ +RY ALV G+ G I PL
Sbjct: 412 IALNKRV-------------HKALQKQFIE--RSVEKRYVALVAGNIAADSGSIELPL-- 454
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
+LD R ++ +G + ++T ++VL N + ++L P T R HQLRVHCA
Sbjct: 455 -VLDFDDKPRQMVCYKTG----KPSLTTWQVL-ERKNNTTRLQLYPKTGRTHQLRVHCAH 508
Query: 385 ALG--TPIVGDYKYG 397
LG TPIVGD YG
Sbjct: 509 HLGLNTPIVGDTHYG 523
>gi|146311257|ref|YP_001176331.1| 23S rRNA pseudouridylate synthase C [Enterobacter sp. 638]
gi|145318133|gb|ABP60280.1| ribosomal large subunit pseudouridine synthase C [Enterobacter sp.
638]
Length = 315
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P R+++R + ++P+ +++ L + Y D IL
Sbjct: 52 KRVKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLNKVAALTNAILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + + + M + Y ALV G + ++ APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRE--KGMQKDYLALVRGQWQSHVKVVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ + G + E R C+ + P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVNSEGKPSETRFKVEER-----YEFCTLVRCSPVTGRTHQIRVHTL 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 HA-GHPIAFDDRYG 262
>gi|289522930|ref|ZP_06439784.1| ribosomal large subunit pseudouridine synthase D [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503954|gb|EFD25118.1| ribosomal large subunit pseudouridine synthase D [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 299
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 107/229 (46%), Gaps = 40/229 (17%)
Query: 183 YDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALS 242
+D TL P + L Y D+ I++++KP PL H V + L L
Sbjct: 59 HDEEKEATLEPEPVNFEVL-----YEDADIIIIDKP--APLVVHPAVGHWYGTLVHG-LV 110
Query: 243 YDYNE-------GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDA 295
Y Y E P +VHRLD +SGL+++ R S LT D K++S+ K
Sbjct: 111 YRYPELADSDMRRPGIVHRLDAGTSGLMVIARNLFSKQKLT----DAFKARSVKK----- 161
Query: 296 CEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRV 355
Y ALV GSP +++G I +P+ + R+ +A SG +EA+TEY V
Sbjct: 162 ------EYLALVYGSPNKEKGTIASPIGR-----HPKNRLKMAVVSG---GREAVTEYEV 207
Query: 356 LGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRW 404
L + S++ T R HQ+RVH + +G PIVGD YG + W
Sbjct: 208 LWSN-DKFSFLRCTIHTGRTHQIRVHLKD-MGCPIVGDRLYGCNLKAEW 254
>gi|373949093|ref|ZP_09609054.1| pseudouridine synthase, RluA family [Shewanella baltica OS183]
gi|386325069|ref|YP_006021186.1| RluA family pseudouridine synthase [Shewanella baltica BA175]
gi|333819214|gb|AEG11880.1| pseudouridine synthase, RluA family [Shewanella baltica BA175]
gi|373885693|gb|EHQ14585.1| pseudouridine synthase, RluA family [Shewanella baltica OS183]
Length = 319
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ +++ P R+ P + T PS PN ++
Sbjct: 47 GEVRVNKKRIKPEYKLQIGDIVRIPPVRVAEPDNR----------TAPS----PNLSKVS 92
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D+ ++VLNKP + + G V + ++AL + + E LVHRLD++
Sbjct: 93 QLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLE---LVHRLDKD 149
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G + +
Sbjct: 150 TSGVLLVAKKR---SALKHLHDQLRYKK------------MQKDYLALVKGEWSAQDKAV 194
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
PL K+ L G ERI+ G + + T ++++ GC+ ++ P+T R HQ+
Sbjct: 195 KQPLLKITLKSG--ERIVRVNAEG----KPSETRFKIM-QRYQGCTLVKASPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 248 RVHCQFA-GHPIACDDKY 264
>gi|378708113|ref|YP_005273007.1| RluA family pseudouridine synthase [Shewanella baltica OS678]
gi|418026179|ref|ZP_12665151.1| pseudouridine synthase, RluA family [Shewanella baltica OS625]
gi|315267102|gb|ADT93955.1| pseudouridine synthase, RluA family [Shewanella baltica OS678]
gi|353534500|gb|EHC04070.1| pseudouridine synthase, RluA family [Shewanella baltica OS625]
Length = 319
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ +++ P R+ P + T PS PN ++
Sbjct: 47 GEVRVNKKRIKPEYKLQIGDIVRIPPVRVAEPDNR----------TAPS----PNLSKVS 92
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D+ ++VLNKP + + G V + ++AL + + E LVHRLD++
Sbjct: 93 QLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLE---LVHRLDKD 149
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G + +
Sbjct: 150 TSGVLLVAKKR---SALKHLHDQLRYKK------------MQKDYLALVKGEWSAQDKAV 194
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
PL K+ L G ERI+ G + + T ++++ GC+ ++ P+T R HQ+
Sbjct: 195 KQPLLKITLKSG--ERIVRVNAEG----KPSETRFKIM-QRYQGCTLVKASPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 248 RVHCQFA-GHPIACDDKY 264
>gi|183599498|ref|ZP_02960991.1| hypothetical protein PROSTU_02977 [Providencia stuartii ATCC 25827]
gi|386741748|ref|YP_006214927.1| 23S rRNA pseudouridylate synthase C [Providencia stuartii MRSN
2154]
gi|188021745|gb|EDU59785.1| pseudouridine synthase, RluA family [Providencia stuartii ATCC
25827]
gi|384478441|gb|AFH92236.1| 23S rRNA pseudouridylate synthase C [Providencia stuartii MRSN
2154]
Length = 317
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 117/268 (43%), Gaps = 61/268 (22%)
Query: 141 GDSFVEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V +G++KP K I ++V P PV R+++R + S L D++
Sbjct: 44 GEVRVNKGRIKPEYKLIAGDQVRVP------PV-----RVAEREEAPVSAKL----DKVS 88
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK--------- 250
L + Y D AILV+NKP + G + LS+ EG +
Sbjct: 89 ALADCILYEDDAILVINKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFL 136
Query: 251 -LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG 309
LVHRLDR++SG+LL+ + + ++ L + M + Y ALV G
Sbjct: 137 ELVHRLDRDTSGILLVAKKRSALRALHEQLR---------------LKQMQKDYLALVRG 181
Query: 310 SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR 369
+ +I APL K +L G ER++ G + E R + + ++
Sbjct: 182 HWQSHTKVIQAPLLKNILQSG--ERVVRVSPEGKPSETRFKVEER-----FDNATLVKAS 234
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T R HQ+RVH A G PI D +YG
Sbjct: 235 PVTGRTHQIRVHTLHA-GHPIAFDNRYG 261
>gi|157962324|ref|YP_001502358.1| RluA family pseudouridine synthase [Shewanella pealeana ATCC
700345]
gi|157847324|gb|ABV87823.1| pseudouridine synthase, RluA family [Shewanella pealeana ATCC
700345]
Length = 319
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 120/258 (46%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K+ +++ P R VS EGR PS L ++
Sbjct: 47 GEVRVNKKRIKPEYKLADGDIVRIPPVR----VSESEGRPG------PSAKLT----KVS 92
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D ++VLNKP + + G V ++A+ + + E LVHRLD+E
Sbjct: 93 QLEERILFEDKYLIVLNKPSGIAVHGGSGVEFGVIEAMRSLRTQQKFLE---LVHRLDKE 149
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G + +I
Sbjct: 150 TSGVLLIAKKR---SALRHLHDQLRYKK------------MQKDYVALVRGEWQSHDKVI 194
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
APL K+ L G ERI+ G +E+ T +++L + ++ P+T R HQ+
Sbjct: 195 KAPLLKLTLKSG--ERIVRVNKEG----KESETRFKIL-QRYEDSTLVQASPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 248 RVHCQFA-GHPIACDEKY 264
>gi|56460456|ref|YP_155737.1| pseudouridylate synthase [Idiomarina loihiensis L2TR]
gi|56179466|gb|AAV82188.1| Predicted pseudouridylate synthase, Rlu family [Idiomarina
loihiensis L2TR]
Length = 315
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 127/265 (47%), Gaps = 55/265 (20%)
Query: 144 FVEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLR 202
V +G+++ +K IK + ++ G I +P ++++R D +PS N +++ L
Sbjct: 41 IVRKGEVRANKKRIKPDYKLKEGDLIRIPPV----KVNERPD-LPSA----NLEQVAALE 91
Query: 203 RLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG-----PK-----LV 252
+ Y D A++++NKP V + G + L + EG PK LV
Sbjct: 92 HAILYEDDALMLINKPSGVAVHG------------GSGLQFGLIEGLRALRPKEKSLELV 139
Query: 253 HRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPK 312
HR+DR++SGLLL+ + + S+L L + + M ++Y ALV G +
Sbjct: 140 HRIDRDTSGLLLVAKKR---SVLRSLHEQLRNKE------------MNKQYLALVRGQWQ 184
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
++ + APL K L G ERI+ G + ++T +R+ G + +E P+T
Sbjct: 185 KRVRSVEAPLKKNTLKSG--ERIVRVDAEG----KASLTRFRIQQRYKEG-TLVEASPVT 237
Query: 373 CRKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+RVH A G PI D KYG
Sbjct: 238 GRTHQIRVHALHA-GHPIAKDPKYG 261
>gi|398988283|ref|ZP_10692330.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM24]
gi|399011008|ref|ZP_10713341.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM16]
gi|398118346|gb|EJM08077.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM16]
gi|398149781|gb|EJM38416.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM24]
Length = 307
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P
Sbjct: 36 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPLAQ--------GL 77
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + + D A++V+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 78 LQRLEASIVFEDKALIVINKPAGIAVHGGSGLNFGVIE-AFRQLRPDAKE-LELVHRLDR 135
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + S+L L + + + +RY ALV G+
Sbjct: 136 DTSGLLMIAKKR---SMLRHLHEQLR------------GDGVDKRYMALVRGNWATSIKK 180
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ + G +EA+T ++VL + + +E +P+T R HQ
Sbjct: 181 VSAPLLKSNLRSG--ERMVEVNDEG----KEALTMFKVLRRFGDFATMVEAKPVTGRTHQ 234
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 235 IRVHTLHA-GHCIAGDSKYG 253
>gi|386340699|ref|YP_006037065.1| RluA family pseudouridine synthase [Shewanella baltica OS117]
gi|334863100|gb|AEH13571.1| pseudouridine synthase, RluA family [Shewanella baltica OS117]
Length = 319
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ +++ P R+ P + T PS PN ++
Sbjct: 47 GEVRVNKKRIKPEYKLQIGDIVRIPPVRVAEPDNR----------TAPS----PNLSKVS 92
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D+ ++VLNKP + + G V + ++AL + + E LVHRLD++
Sbjct: 93 QLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLE---LVHRLDKD 149
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G + +
Sbjct: 150 TSGVLLVAKKR---SALKHLHDQLRYKK------------MQKDYLALVKGEWSAQDKAV 194
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
PL K+ L G ERI+ G + + T ++++ GC+ ++ P+T R HQ+
Sbjct: 195 KQPLLKITLKSG--ERIVRVNAEG----KPSETRFKIM-QRYQGCTLVKASPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 248 RVHCQFA-GHPIACDDKY 264
>gi|288929792|ref|ZP_06423635.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 317 str. F0108]
gi|288328893|gb|EFC67481.1| ribosomal large subunit pseudouridine synthase A [Prevotella sp.
oral taxon 317 str. F0108]
Length = 542
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 106/223 (47%), Gaps = 35/223 (15%)
Query: 198 IDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAAL---SYDYNEGPKLVHR 254
+D V Y D ++V++KP G L V + A + Y + P +VHR
Sbjct: 329 VDRAALRVVYEDEGLVVVSKP-----HGMLSVPGKDGGTSVAQMMRQRYPDTDSPLIVHR 383
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIG--SPK 312
LD+++SGL+++ +TKE L F + K RY A++ G P+
Sbjct: 384 LDQDTSGLMIIAKTKEMHRTLQLAFENHEVKK---------------RYVAVLDGLLPPE 428
Query: 313 EKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLT 372
+++G I PL+ LD + +++ N + A+T Y V+G G + + L PLT
Sbjct: 429 KQRGEISLPLNSNYLD--RPRQMVDWLN-----GKSAVTRYEVIG-HEEGRTIVALYPLT 480
Query: 373 CRKHQLRVHCA--EALGTPIVGDYKYGWFVHRRWKQMPRVDIE 413
R HQLRVHCA + L PI+GD YG R + +++E
Sbjct: 481 GRTHQLRVHCAHPDGLNLPILGDPLYGRKADRMYLHAEVIEVE 523
>gi|407001645|gb|EKE18590.1| hypothetical protein ACD_9C00289G0006 [uncultured bacterium]
Length = 310
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 37/204 (18%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE-------------GPKLVH 253
+ ++ I+V++KP L+ H P N + AL Y E P +VH
Sbjct: 85 FENNNIIVISKPA--GLQVH-PSSNEKENTLVNALICKYPEIKNIHDEKEDAWTRPGIVH 141
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKE 313
RLD+++SG++++ R ++ L LF + N K+ Y A+ G KE
Sbjct: 142 RLDKDTSGVMVIARNIATLEKLKELFKNRNIEKT---------------YLAITSGIFKE 186
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
K GII P+++ ++ ++A+N+ + A T +RVL N S +E+ P T
Sbjct: 187 KIGIIDKPIAR----STSYKKQVIARNNTKTTIRSAETHFRVLKEF-NEYSLVEVSPKTG 241
Query: 374 RKHQLRVHCAEALGTPIVGDYKYG 397
R HQ+R+H + +G P+VGD YG
Sbjct: 242 RMHQIRIHLS-FIGHPVVGDLIYG 264
>gi|348029143|ref|YP_004871829.1| ribosomal large subunit pseudouridine synthase C [Glaciecola
nitratireducens FR1064]
gi|347946486|gb|AEP29836.1| ribosomal large subunit pseudouridine synthase C [Glaciecola
nitratireducens FR1064]
Length = 315
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 27/207 (13%)
Query: 192 NPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPK 250
N N + + L + + D I+V NKP + + G ++ ++ L A + + E
Sbjct: 80 NVNLNRVSTLESHIIFEDDRIIVFNKPTGLAVHGGSGLNFGVIEGLRALRPQHQFLE--- 136
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG LL+ + + ++ L +SK + K RY ALV G
Sbjct: 137 LVHRLDRDTSGCLLIAKKRSALRDLHEQL----RSKQVDK-----------RYHALVAGE 181
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ APL K +L G ER++ N G + + T +RVL + + IE P
Sbjct: 182 WPANCFKVDAPLQKNVLKSG--ERLVSVSNEG----KPSETRFRVLRNFTHS-TLIEASP 234
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVHC A G I D KYG
Sbjct: 235 ITGRTHQIRVHCLHA-GHAIAMDSKYG 260
>gi|182623983|ref|ZP_02951771.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
gi|177910876|gb|EDT73230.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
Length = 298
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 130/278 (46%), Gaps = 54/278 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+K N V++ G I + +S E S + P +I+ + Y DS ILVL
Sbjct: 48 VKMNYVVKTGEEIKIELSKKE-----------SQNIEPEKMDIE-----IVYEDSDILVL 91
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP-----KLVHRLDRESSGLLLMGRTKE 270
NK P + + P + + A + Y + E +LV RLD +SGL+++G+ +
Sbjct: 92 NKKPFMVVH---PTRSHPNGTLANGILYYFKESNQDCIVRLVSRLDMNTSGLIIIGKNQY 148
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
+ +L+ N+ K+ + +RY A+V G+ +EK+G I+ P+ + D
Sbjct: 149 AHMVLS------NEMKT---------DKFQKRYLAIVHGNLEEKEGTINRPIYRPAEDTI 193
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPI 390
K R++ E QE++T Y+V+ G +E T R HQ+RVH + +LG PI
Sbjct: 194 K--RVV------DERGQESITHYKVIESY-EGADLVECLLETGRTHQIRVHLS-SLGHPI 243
Query: 391 VGDYKYGW----FVHRRWKQMPRVDI-EPTSGKPYKLR 423
GD YG F+ R+ +D P + +P LR
Sbjct: 244 FGDSLYGTEDEDFISRQALHAYGLDFYSPKTKEPLSLR 281
>gi|217973818|ref|YP_002358569.1| RluA family pseudouridine synthase [Shewanella baltica OS223]
gi|217498953|gb|ACK47146.1| pseudouridine synthase, RluA family [Shewanella baltica OS223]
Length = 319
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 122/258 (47%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ +++ P R+ P + T PS PN ++
Sbjct: 47 GEVRVNKKRIKPEYKLQIGDIVRIPPVRVAEPDNR----------TAPS----PNLSKVS 92
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D+ ++VLNKP + + G V + ++AL + + E LVHRLD++
Sbjct: 93 QLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLE---LVHRLDKD 149
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G + +
Sbjct: 150 TSGVLLVAKKR---SALKHLHDQLRYKK------------MQKDYLALVKGEWSAQDKAV 194
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
PL K+ L G ERI+ G + + T ++++ GC+ ++ P+T R HQ+
Sbjct: 195 KQPLLKITLKSG--ERIVRVNAEG----KPSETRFKIM-QRYQGCTLVKASPVTGRTHQI 247
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 248 RVHCQFA-GHPIACDDKY 264
>gi|78186656|ref|YP_374699.1| pseudouridine synthase RluD [Chlorobium luteolum DSM 273]
gi|78166558|gb|ABB23656.1| ribosomal large subunit pseudouridine synthase D [Chlorobium
luteolum DSM 273]
Length = 354
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 153/352 (43%), Gaps = 68/352 (19%)
Query: 134 QMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNP 193
+++C D ++ + Q++ + K E +E G + S+ K D+I L P
Sbjct: 33 RVQCPMRIDQYLTR-QVENATRNKVQEAIEDGRVLVNGKSVKSNYRVKSCDSIEMTFLRP 91
Query: 194 NADEI--DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY---DYNE- 247
A E+ + + + Y DS ++V+NK P + + H N LA A L + D E
Sbjct: 92 PAPELAPEDIPIDIVYEDSDLMVVNKAPGMVV--HPAFGNWTGTLANAILHHFGTDAEEL 149
Query: 248 -----GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR 302
P +VHRLD+++SGL+++ R ++ L F+D SK
Sbjct: 150 ETDELRPGIVHRLDKDTSGLIIVARNPTALHRLARQFADRKVSK---------------L 194
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQ--NSGLEASQEAMTEYRVLGPMI 360
Y A++ G P+ ++G IH + + + +R ++A GLE + A+T+YRV
Sbjct: 195 YTAILWGVPEPQEGTIHTNIGR-----SRRDRKVMANFPYEGLEG-KTAITDYRV----T 244
Query: 361 NGCSWIELRPLTC---RKHQLRVHCAEALGTPIVGDYKYGW-------------FVHRRW 404
W L LT R HQ+R H + LG I+GD YG FV
Sbjct: 245 ENLHWFSLAELTLHTGRTHQIRAHM-QHLGHQILGDTTYGGASLRTLDFPRSESFVKNLL 303
Query: 405 KQMPRVDI--------EPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRE 448
+PR + +PT+G+P P D+ + L K+ +++ RE
Sbjct: 304 DLLPRQALHAASLSFHQPTTGRPLSFTAPLPEDMAQA--LEKIRVIYRSARE 353
>gi|320354569|ref|YP_004195908.1| RluA family pseudouridine synthase [Desulfobulbus propionicus DSM
2032]
gi|320123071|gb|ADW18617.1| pseudouridine synthase, RluA family [Desulfobulbus propionicus DSM
2032]
Length = 302
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 36/223 (16%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN 246
P+ +L+ ++ID+ + + D +LV+ KPP + + P L Y
Sbjct: 61 PTPSLDLAPEKIDFS---ILFEDEHLLVIGKPPGLVVH---PACGHGGGTLVHGLLYHCQ 114
Query: 247 EGPKL-------VHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAM 299
+ P L VHRLD+++SG++L+ +++ S L L +D K +
Sbjct: 115 DLPALDAGRPGIVHRLDKDTSGVMLVAKSERS---LRSLMADFKNRK------------I 159
Query: 300 YQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ Y AL++ SP+E++G + AP+ + +D +++ + + G + A T +RVL
Sbjct: 160 HKTYHALLLRSPREREGRLVAPIGRHPVD---RKKMAIRPDQG----KYAATHWRVLESF 212
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHR 402
ING +E+ T R HQ+RVH A +L P+ GD YG V R
Sbjct: 213 INGWCLVEIGIETGRTHQIRVHMA-SLRAPVAGDALYGGRVER 254
>gi|414152988|ref|ZP_11409315.1| Uncharacterized RNA pseudouridine synthase ylyB [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455370|emb|CCO07217.1| Uncharacterized RNA pseudouridine synthase ylyB [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 307
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 35/201 (17%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE--------GPKLVHRLD 256
+ Y DS ++V+NKP + + P ++ AL Y + P +VHRLD
Sbjct: 82 IYYEDSHLIVVNKPRGMVVH---PADGTVSGTLVNALLYHCQDLSGINGVMRPGIVHRLD 138
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+++SGLL++ + N ++L++ D + +RY ALV + KE+QG
Sbjct: 139 KDTSGLLMVAKND-------------NAHQALAQQLKD--RTVTRRYLALVHNNLKEEQG 183
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
++AP+ + D K ++ +N S+ A+T YRV+ + IE R T R H
Sbjct: 184 TVNAPIGRDPRDRQKMA--VIERN-----SKPAVTHYRVV-ERFGRYTLIECRLETGRTH 235
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
Q+RVH + LG P+VGD KYG
Sbjct: 236 QIRVHMS-YLGFPLVGDPKYG 255
>gi|325184958|emb|CCA19450.1| ribosomal large subunit pseudouridine synthase C pu [Albugo
laibachii Nc14]
Length = 344
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 143/333 (42%), Gaps = 75/333 (22%)
Query: 97 GKHWGRQC------HVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQM 150
G+HW + ++ W+ F + +S IQ H KG +++ V Q +
Sbjct: 9 GRHWLARLLSPNDHNIRLDRWLSQEFGDKSNSFIQKHIRKGNIRLS--------VSQTKH 60
Query: 151 KPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIP-SGTLNPNADEIDYLRRLVKYRD 209
+ +R+ N+ ++ G + + + K + +P ++ + L ++YRD
Sbjct: 61 ERVRRAPANQKLQSGNLVAIRKNTFHEFSQKTNEFLPLEPFISSEKRYFEALYERIRYRD 120
Query: 210 SAILVLNKPPKVPLKG------------HLPVHNSMDALAAAALSYD-YNEGPKLVHRLD 256
+ +L+KP + ++G H+ H + + Y+ E P+LVHR+D
Sbjct: 121 ANYFILDKPSGLAVQGGERSTKSLADYFHM-FHERLSKTDDPEMDYEILPELPRLVHRID 179
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+ +SGL+++ R + + + FS++ + + + K Y A VI S
Sbjct: 180 KGTSGLVVIARHRRAAAA----FSELLRERRIEKE-----------YQAFVIPS-----R 219
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELR------- 369
P + G+ E +I +EA+T Y+V+ P+ + +L
Sbjct: 220 TFEVP------ETGRLESVI--------EGKEAITMYKVIDPVSREITLAKLSFEFPQGK 265
Query: 370 -----PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T RKHQ+R+HCA L PI+GD +YG
Sbjct: 266 CLKVWPITGRKHQIRIHCATILHAPILGDGRYG 298
>gi|341613465|ref|ZP_08700334.1| pseudouridylate synthase [Citromicrobium sp. JLT1363]
Length = 217
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 31/197 (15%)
Query: 205 VKYRDSAILVLNKPPKVPL----KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
+ Y D LV++KP +P+ KG + + +D+L + P VHRLD ++S
Sbjct: 5 ILYEDGEALVIDKPAGLPIDRPRKGGECLEDHLDSL-----KLGFQRAPTPVHRLDTDTS 59
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ F +A+ + Y ++ G P++ +G I
Sbjct: 60 GCLLLARNPKAHKRFAAAFE---------------AQAVTKVYHGVLAGVPQDSEGRIEL 104
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L+K+ + K R+I A+ + ++TE+RV+ G + +E RP T R HQ+RV
Sbjct: 105 ALAKISSAE-KGWRMIPARKG-----KPSLTEWRVVAEH-EGRTLVEFRPATGRTHQIRV 157
Query: 381 HCAEALGTPIVGDYKYG 397
H A +G ++GD YG
Sbjct: 158 HAASGIGIALLGDPVYG 174
>gi|304312939|ref|YP_003812537.1| ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium HdN1]
gi|301798672|emb|CBL46904.1| Ribosomal large subunit pseudouridine synthase C [gamma
proteobacterium HdN1]
Length = 311
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 117/263 (44%), Gaps = 45/263 (17%)
Query: 137 CANMGDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNA 195
C G+ V +G++KP +++ +++ P R R + D I G N
Sbjct: 34 CLRKGEVRVNKGRIKPDYRVQGGDLIRIPPLR----------RSEQSDDEIHVGERIRN- 82
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRL 255
L + Y D ++VLNKP + + G V S+ + A + +LVHRL
Sbjct: 83 ----LLEGAILYEDEGLIVLNKPAGMAVHGGSGV--SVGVIEALRAIRPLSRHLELVHRL 136
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR--YWALVIGSPKE 313
DR++SG L+ V K +S + ++ +A R YWALV G K
Sbjct: 137 DRDTSGCLM-----------------VAKKRSRLRVLHEQLQAGEIRKVYWALVEGRWKG 179
Query: 314 KQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTC 373
K I APL K G ERI+ G +S TE+ VL S +E PLT
Sbjct: 180 KFRRIDAPLQKFGEQGG--ERIVKVSQQGKPSS----TEF-VLLRHFEETSLVEASPLTG 232
Query: 374 RKHQLRVHCAEALGTPIVGDYKY 396
R HQ+RVH A+ G PIVGD KY
Sbjct: 233 RTHQIRVH-AQFAGHPIVGDDKY 254
>gi|429765557|ref|ZP_19297842.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
gi|429186008|gb|EKY26971.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
Length = 315
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 33/201 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG-------PKLVHRLDR 257
+ Y DS ++++NK V + H N L L + + P +VHR+D+
Sbjct: 94 IVYEDSDVIIINKSKGVVV--HPAPGNYTGTLVNGILHHCTDLSGINGVIRPGIVHRIDK 151
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG+L++ + ++ + L F D ++ + Y+ALV G +G
Sbjct: 152 DTSGILVIAKNDDAHNSLAVQFKD---------------HSIKREYYALVEGRFSTLEGT 196
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ P+S+ K +RI +A NS + A+T Y VL G S I+ T R HQ
Sbjct: 197 VDKPISR-----DKKDRIKMAINSD---GKRAVTHYEVLEQYDKGVSLIKCTLETGRTHQ 248
Query: 378 LRVHCAEALGTPIVGDYKYGW 398
+RVH A ++G P+VGD YG+
Sbjct: 249 IRVHMA-SIGHPLVGDLVYGY 268
>gi|429104090|ref|ZP_19166064.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter turicensis 564]
gi|426290739|emb|CCJ92177.1| Ribosomal large subunit pseudouridine synthase C ## LSU Psi955,
Psi2504 and Psi2580 [Cronobacter turicensis 564]
Length = 331
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 112/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++IK +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 66 KRIKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALSDVILYEDDHIL 117
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 118 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 165
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + D + M + Y ALV G + + APL
Sbjct: 166 LVAKKRSAL-------------RSLHEQLRD--KGMQKDYLALVRGQWQSHVKTVQAPLL 210
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 211 KNILQSG--ERIVRVNQEGKPSETRFKVEERFASATLVRCS-----PVTGRTHQIRVHTQ 263
Query: 384 EALGTPIVGDYKYG 397
A G PI D YG
Sbjct: 264 FA-GHPIAFDLAYG 276
>gi|403235302|ref|ZP_10913888.1| pseudouridine synthase [Bacillus sp. 10403023]
Length = 299
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 33/198 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY-----NEGPKLVHRLDRES 259
+ Y D +LV+NKPP + +P +S A AL Y Y N LV+RLDR++
Sbjct: 84 IVYEDPYVLVVNKPPH---QQSIPSRDSSTGSLANALLYYYQSIGLNATVHLVNRLDRDT 140
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLLL+ + + + L S+ K+ L + Y A+V G E+ G +
Sbjct: 141 SGLLLVAKHRH----IHHLLSEQQKAGKLKRT-----------YEAVVHGVLDEELGTVD 185
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
AP+ + DD ER + E Q A+T ++V+ + S I+L+ T R HQ+R
Sbjct: 186 APIGRK--DDSIIERQV------REDGQRAVTHFKVIEEL-GDWSHIQLQLETGRTHQIR 236
Query: 380 VHCAEALGTPIVGDYKYG 397
VH + +G PIVGD YG
Sbjct: 237 VHLSH-IGHPIVGDDLYG 253
>gi|153000233|ref|YP_001365914.1| RluA family pseudouridine synthase [Shewanella baltica OS185]
gi|151364851|gb|ABS07851.1| pseudouridine synthase, RluA family [Shewanella baltica OS185]
Length = 329
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 123/258 (47%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ +++ P R+ P + R T PS PN ++
Sbjct: 57 GEVRVNKKRIKPEYKLQIGDIVRIPPVRVAEP----DNR------TAPS----PNLSKVS 102
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D+ ++VLNKP + + G V + ++AL + + E LVHRLD++
Sbjct: 103 QLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLE---LVHRLDKD 159
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G + +
Sbjct: 160 TSGVLLVAKKR---SALKHLHDQLRYKK------------MQKDYLALVKGEWSAQDKAV 204
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
PL K+ L G ERI+ G + + T ++++ GC+ ++ P+T R HQ+
Sbjct: 205 KQPLLKITLKSG--ERIVRVNAEG----KPSETRFKIM-QRYQGCTLVKASPVTGRTHQI 257
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 258 RVHCQFA-GHPIACDDKY 274
>gi|395494532|ref|ZP_10426111.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
PAMC 25886]
gi|395796675|ref|ZP_10475970.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
Ag1]
gi|421141454|ref|ZP_15601439.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
fluorescens BBc6R8]
gi|395339239|gb|EJF71085.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas sp.
Ag1]
gi|404507463|gb|EKA21448.1| ribosomal large subunit pseudouridine synthase C [Pseudomonas
fluorescens BBc6R8]
Length = 319
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P
Sbjct: 48 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPLAQ--------GL 89
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + + D A++V+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 90 LQRLEASIVFEDKALIVINKPCGIAVHGGSGLNYGVIE-AFRQLRPDAKE-LELVHRLDR 147
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + S+L L + + + + +RY ALV G+
Sbjct: 148 DTSGLLMIAKKR---SMLRHLHAALR------------GDGVDKRYMALVRGNWATSIKS 192
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ
Sbjct: 193 VRAPLQKSNLRSG--ERMVEVDEEG----KEALTLFKVLRRFGDFATMVEAKPVTGRTHQ 246
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 247 IRVHTLHA-GHCIAGDTKYG 265
>gi|301782175|ref|XP_002926502.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Ailuropoda melanoleuca]
Length = 345
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 126/272 (46%), Gaps = 60/272 (22%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LSRGIVHQDMDLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ KE + LF +++ ++K +YWA+ + P G
Sbjct: 154 KETTGVMVLAWEKEVAHQVQELF----RTRQVAK-----------KYWAVTVRVPVPPAG 198
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
++ P+ +E +A+T+Y+VL ++ + +EL+P+T KH
Sbjct: 199 VVDIPV--------------------IEKEVQAVTQYQVLSSTLSS-ALVELQPITGVKH 237
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVL 436
QLRVH + L PI+GD+KY W ++ + + K L++ +
Sbjct: 238 QLRVHLSFGLDCPILGDHKYS-----DWNKLAPQKLSLGTLKKLGLQQAKARHIP----- 287
Query: 437 SKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
LHLH R+L + P L S+ + +L+
Sbjct: 288 -----LHLHARQL----ILPALGSRKEELNLV 310
>gi|160874866|ref|YP_001554182.1| RluA family pseudouridine synthase [Shewanella baltica OS195]
gi|160860388|gb|ABX48922.1| pseudouridine synthase, RluA family [Shewanella baltica OS195]
Length = 329
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 42/259 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ +++ P R+ P + R T PS PN ++
Sbjct: 57 GEVRVNKKRIKPEYKLQIGDIVRIPPVRVAEP----DNR------TAPS----PNLSKVS 102
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D+ ++VLNKP + + G V + ++AL + + E LVHRLD++
Sbjct: 103 QLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLE---LVHRLDKD 159
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G + +
Sbjct: 160 TSGVLLVAKKR---SALKHLHDQLRYKK------------MQKDYLALVKGEWSAQDKAV 204
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
PL K+ L G ERI+ G + + T ++++ GC+ ++ P+T R HQ+
Sbjct: 205 KQPLLKITLKSG--ERIVRVNAEG----KPSETRFKIM-QRYQGCTLVKASPVTGRTHQI 257
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVHC A G PI D KY
Sbjct: 258 RVHCQFA-GHPIACDDKYS 275
>gi|335047539|ref|ZP_08540560.1| pseudouridine synthase, RluA family [Parvimonas sp. oral taxon 110
str. F0139]
gi|333761347|gb|EGL38902.1| pseudouridine synthase, RluA family [Parvimonas sp. oral taxon 110
str. F0139]
Length = 292
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 29/197 (14%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAA-AALSYDYNEGPKLVHRLDRESS 260
+ Y D I+++NKP + P G+ H ++AL LS +E P +VHRLD++++
Sbjct: 79 IVYEDDYIIIINKPRNMVVHPAAGN-EAHTLVNALLNHCKLSMINSERPGIVHRLDKDTT 137
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
GL++ + E+ L +FS+ + ++Y A+ GS ++ G I
Sbjct: 138 GLIVCAKDDETHLKLVEMFSN---------------REINKKYLAICNGSFSKENGFIDK 182
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
P+ + D+ +++ + SG +EA+TEY +L + S +++ T R HQ+RV
Sbjct: 183 PIGR---DEKDRKKMSVKSKSG----KEALTEYNILTSNLK-YSLVDVTLHTGRTHQIRV 234
Query: 381 HCAEALGTPIVGDYKYG 397
H + +L PIVGD YG
Sbjct: 235 HFS-SLNHPIVGDKTYG 250
>gi|126173940|ref|YP_001050089.1| RluA family pseudouridine synthase [Shewanella baltica OS155]
gi|125997145|gb|ABN61220.1| ribosomal large subunit pseudouridine synthase C [Shewanella
baltica OS155]
Length = 329
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 123/258 (47%), Gaps = 42/258 (16%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ +++ P R+ P + R T PS PN ++
Sbjct: 57 GEVRVNKKRIKPEYKLQIGDIVRIPPVRVAEP----DNR------TAPS----PNLSKVS 102
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D+ ++VLNKP + + G V + ++AL + + E LVHRLD++
Sbjct: 103 QLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLE---LVHRLDKD 159
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SG+LL+ + + S L L + K M + Y ALV G + +
Sbjct: 160 TSGVLLVAKKR---SALKHLHDQLRYKK------------MQKDYLALVKGEWSAQDKAV 204
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
PL K+ L G ERI+ G + + T ++++ GC+ ++ P+T R HQ+
Sbjct: 205 KQPLLKITLKSG--ERIVRVNAEG----KPSETRFKIM-QRYQGCTLVKASPVTGRTHQI 257
Query: 379 RVHCAEALGTPIVGDYKY 396
RVHC A G PI D KY
Sbjct: 258 RVHCQFA-GHPIACDDKY 274
>gi|336311182|ref|ZP_08566149.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
HN-41]
gi|335865398|gb|EGM70424.1| ribosomal large subunit pseudouridine synthase C [Shewanella sp.
HN-41]
Length = 320
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 46/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVME-PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP K++ +++ P R+ P + R T PS L+ ++
Sbjct: 48 GEVRVNKKRIKPEYKLQIGDIVRIPPVRVAEP----DNR------TAPSANLS----KVS 93
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPV-HNSMDALAAAALSYDYNEGPKLVHRLDRE 258
L + + D+ ++VLNKP + + G V + ++AL + + E LVHRLD++
Sbjct: 94 QLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIEALRSLRPQQKFLE---LVHRLDKD 150
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALVIGSPKEKQG 316
+SG+LL V K +S K +D + M + Y ALV G +
Sbjct: 151 TSGVLL-----------------VAKKRSALKHMHDQLRYKKMQKDYLALVKGEWSAQDK 193
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
++ PL K+ L G ERI+ G + + T ++++ GC+ ++ P+T R H
Sbjct: 194 VVKQPLLKITLKSG--ERIVRVNAEG----KPSETRFKIV-QRYQGCTLVQASPVTGRTH 246
Query: 377 QLRVHCAEALGTPIVGDYKY 396
Q+RVHC A G PI D KY
Sbjct: 247 QIRVHCQYA-GHPIACDEKY 265
>gi|423119726|ref|ZP_17107410.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5246]
gi|376397565|gb|EHT10196.1| ribosomal large subunit pseudouridine synthase C [Klebsiella
oxytoca 10-5246]
Length = 331
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G I +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 66 KRVKPEYKLEAGDEIRIPPV----RVAEREEE----AVSPHLQKVSALADVILYEDDHIL 117
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 118 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 165
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + + + M + Y ALV G + ++ APL
Sbjct: 166 LVAKKRSAL-------------RSLHEQLRE--KGMQKDYLALVRGQWQSHTKVVQAPLL 210
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 211 KNILQSG--ERIVRVSQEGKPSETRFKVEERYTHATLVRCS-----PVTGRTHQIRVHTQ 263
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 264 YA-GHPIAFDDRYG 276
>gi|359431784|ref|ZP_09222200.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20652]
gi|357921582|dbj|GAA58449.1| tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase
[Pseudoalteromonas sp. BSi20652]
Length = 551
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 29/196 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDAL-AAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y+D +LV+NKP + +P N D++ + GP +VHRLD +SGLL
Sbjct: 350 IIYKDDDLLVVNKPAEFL---SVPGVNIDDSVYMRIKTQFPEASGPLIVHRLDMSTSGLL 406
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
++ K K+L K + + + +RY ALV G+ E G+I PL
Sbjct: 407 MIALNKRV-------------HKALQKQFIE--RTIDKRYVALVNGNVAEDSGVIDLPL- 450
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
VL D K +++ ++ + ++T ++VL N + ++L P T R HQLRVHCA
Sbjct: 451 -VLDFDDKPRQMVCYKHG-----KPSLTTWQVLDRN-NNITRLQLYPKTGRTHQLRVHCA 503
Query: 384 EALG--TPIVGDYKYG 397
+LG PIVGD YG
Sbjct: 504 HSLGLNMPIVGDTHYG 519
>gi|251778694|ref|ZP_04821614.1| pseudouridine synthase, RluA family [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243083009|gb|EES48899.1| pseudouridine synthase, RluA family [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 298
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 43/247 (17%)
Query: 188 SGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE 247
S +NP ++D + Y D +LV+NK P + + P N A + Y + E
Sbjct: 69 SQNINPEKIDLD-----IVYEDDDVLVINKQPFIIVH---PTKNFQSGTLANGILYYFQE 120
Query: 248 GP-----KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR 302
+LV RLD +SGL+++ + + S S L+ D E + +R
Sbjct: 121 TNQNCIVRLVSRLDMNTSGLIIIAKNQFSHSRLS----------------KDMKEKLQKR 164
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
Y A+V G+ +EK+G I P+ K + + R+I E Q ++T Y+V+ G
Sbjct: 165 YLAIVHGNLEEKEGTIDLPIYKPEGIEYGSRRVI------DERGQRSITHYKVIESF-EG 217
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGW-----FVHRRWKQMPRVDIE-PTS 416
+E T R HQ+RVH + LG PI GD YG + R+ +D E P S
Sbjct: 218 GDLVECLLETGRTHQIRVHLSH-LGHPIYGDELYGVGLEENLIKRQALHAYGLDFESPRS 276
Query: 417 GKPYKLR 423
KP LR
Sbjct: 277 LKPLSLR 283
>gi|374324394|ref|YP_005077523.1| pseudouridylate synthase [Paenibacillus terrae HPL-003]
gi|357203403|gb|AET61300.1| pseudouridylate synthase [Paenibacillus terrae HPL-003]
Length = 248
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 26/208 (12%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----LVHRLDRES 259
LV Y D+ +L + KP VP + + +L L +N+ LVHRLDR
Sbjct: 17 LVLYEDNHVLAIVKPVNVPTQEDASGDPDLLSLLKEDLKIRHNKPGNVFLGLVHRLDRPV 76
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
G ++ +T ++ S L S+ + +S K Y A++ G P QG
Sbjct: 77 GGAMIFAKTSKAASRL----SESVRGRSFRKM-----------YVAVLNGVPAASQG--- 118
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
L+ LL D +T + A G ++EA+ EYRVLG +G S +++ T R HQ+R
Sbjct: 119 -RLTHHLLKDSRTN-TVQAVRPGTAGAKEAILEYRVLG-QADGLSLVQIELHTGRSHQIR 175
Query: 380 VHCAEALGTPIVGDYKYGWFVHRRWKQM 407
V +A+G P+ GD KYG + R +Q+
Sbjct: 176 VQM-QAIGCPLYGDQKYGGRLSRPGQQL 202
>gi|121533717|ref|ZP_01665544.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
gi|121307708|gb|EAX48623.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
Length = 309
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 33/200 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY-DYNEG------PKLVHRLDR 257
+ Y D I+V+NKP + + H N L A L + D G P +VHRLD+
Sbjct: 87 ILYEDEDIIVINKPRGMVV--HPAAGNYEGTLVNALLRHCDRLSGINGVSRPGIVHRLDK 144
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SG++++ +T + L A ++Y A+V G+ KE QGI
Sbjct: 145 DTSGVMMVAKTDRA---------------HLDLARQIKERTAGRKYVAIVHGNIKENQGI 189
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I+AP+ + D K + S+EA+T ++VL + +E R T R HQ
Sbjct: 190 INAPIGRHPTDRKKMAVV-------FTNSKEAITTFQVL-ERFGDYTLVECRLFTGRTHQ 241
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A +G P+VGD KYG
Sbjct: 242 IRVHMA-YIGHPVVGDPKYG 260
>gi|442611421|ref|ZP_21026127.1| Ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
gi|441747349|emb|CCQ12189.1| Ribosomal large subunit pseudouridine synthase C [Pseudoalteromonas
luteoviolacea B = ATCC 29581]
Length = 321
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 38/258 (14%)
Query: 141 GDSFVEQGQMKPIRKIKTN-EVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KP+ KI+ N E+ P P+ R++++ P D++
Sbjct: 46 GEVRVNKKRIKPVYKIQANDEIRIP------PI-----RVAEKEQIEPENI--QKFDKVA 92
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRES 259
L+ + + D+ ++V+NKP + + G + S + A +LVHRLDR++
Sbjct: 93 QLQDNILFEDNYLMVINKPSGLAVHGGSGL--SFGLIEAIRALRPEERSLELVHRLDRDT 150
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG +++ + + S+L L + + + M + YWALV G K +
Sbjct: 151 SGCIIIAKKR---SILKGLHEQLRE------------KTMEKNYWALVKGDWSAKNKNVT 195
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
PL K L G ER++ +E + + T +R+L +G + ++ P+T R HQ+R
Sbjct: 196 EPLKKNTLQSG--ERVVRVD---VEEGKPSHTRFRIL-EKFDGATLVQASPVTGRTHQIR 249
Query: 380 VHCAEALGTPIVGDYKYG 397
VH + G PI D KYG
Sbjct: 250 VH-TQCKGNPIACDDKYG 266
>gi|70608135|ref|NP_001020455.1| RNA pseudouridylate synthase domain-containing protein 4 [Rattus
norvegicus]
gi|81918145|sp|Q4QQT0.1|RUSD4_RAT RecName: Full=RNA pseudouridylate synthase domain-containing
protein 4
gi|67678357|gb|AAH98023.1| RNA pseudouridylate synthase domain containing 4 [Rattus
norvegicus]
gi|149027812|gb|EDL83272.1| RNA pseudouridylate synthase domain containing 4 [Rattus
norvegicus]
Length = 377
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 140/294 (47%), Gaps = 63/294 (21%)
Query: 191 LNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYN 246
++PN + RR++ ++D ++V+NKP +P+ G L + + + LA L
Sbjct: 86 VHPNVLAKELSRRIL-HQDKDLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKA 143
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
E L HRLD+E++G++++ K+ + LF +++ + K +YWA+
Sbjct: 144 EPLHLCHRLDKETTGVMVLAWEKDMAHQVQELF----RTRQVEK-----------KYWAI 188
Query: 307 VIGSPKEKQGIIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEA 349
+ P G++ P+ + +D+GK ++ ++++ + A
Sbjct: 189 TVRVPLPSAGVVDIPIMEKEVAGQQQHHKMTLRPSYRMDNGKMVKVRASRDAHV-----A 243
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR 409
+T+Y+VL + + +EL+P+T KHQLRVH A L PI+GD+KY W ++
Sbjct: 244 VTQYQVLSSTPSS-ALVELQPVTGIKHQLRVHLAFGLDCPILGDHKYS-----DWNRLAP 297
Query: 410 VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPD 463
+ ++G KL GL K + LHLH R+L + P L S+ +
Sbjct: 298 QKL--SAGTLKKL----GLQQSKARYIP----LHLHARQL----ILPALGSRTE 337
>gi|188590633|ref|YP_001919968.1| RluA family pseudouridine synthase [Clostridium botulinum E3 str.
Alaska E43]
gi|188500914|gb|ACD54050.1| pseudouridine synthase, RluA family [Clostridium botulinum E3 str.
Alaska E43]
Length = 298
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 43/247 (17%)
Query: 188 SGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE 247
S +NP ++D + Y D +LV+NK P + + P N A + Y + E
Sbjct: 69 SQNINPEKIDLD-----IVYEDDDVLVINKQPFIIVH---PTKNFQSGTLANGILYYFQE 120
Query: 248 GP-----KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR 302
+LV RLD +SGL+++ + + S S L+ D E + +R
Sbjct: 121 TNQNCIVRLVSRLDMNTSGLIIIAKNQFSHSRLS----------------KDMKEKLQKR 164
Query: 303 YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMING 362
Y A+V G+ +EK+G I P+ K + + R+I E Q ++T Y+V+ G
Sbjct: 165 YLAIVHGNLEEKEGTIDLPIYKPEGIEYGSRRVI------DERGQRSITHYKVIESF-EG 217
Query: 363 CSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGW-----FVHRRWKQMPRVDIE-PTS 416
+E T R HQ+RVH + LG PI GD YG + R+ +D E P S
Sbjct: 218 GDLVECLLETGRTHQIRVHLSH-LGHPIYGDELYGVGLEENLIKRQALHAYGLDFESPRS 276
Query: 417 GKPYKLR 423
KP LR
Sbjct: 277 LKPLSLR 283
>gi|88859600|ref|ZP_01134240.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas tunicata D2]
gi|88818617|gb|EAR28432.1| 23S rRNA pseudouridylate synthase [Pseudoalteromonas tunicata D2]
Length = 320
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 121/270 (44%), Gaps = 65/270 (24%)
Query: 141 GDSFVEQGQMKPIRKIKT-NEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEID 199
G+ V + ++KPI K+ +EV P P+ M E + + +P N D I
Sbjct: 46 GEVRVNKKRIKPIYKLNIGDEVRIP------PIKMAE-----QEEFVPK-----NLDVIS 89
Query: 200 YLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK--------- 250
L + + D ++V+NKP + + G + LSY E +
Sbjct: 90 RLEDAILFEDKYLIVINKPAGMAVHG------------GSGLSYGLIEAMRTLRPQETAL 137
Query: 251 -LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDAC--EAMYQRYWALV 307
LVHRLDR++SG LL ++K +S+ K+ ++ + M + YWALV
Sbjct: 138 ELVHRLDRDTSGCLL-----------------ISKKRSVLKSLHEQLREKTMQKNYWALV 180
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE 367
G K + PL K L G ER++ + E + + T +RVL +G + ++
Sbjct: 181 SGEWLSKDKNVTEPLRKNTLQSG--ERVVRVDH---EEGKASHTRFRVLERFRDG-TLVQ 234
Query: 368 LRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T R HQ+RVH + G PI D KYG
Sbjct: 235 ASPVTGRTHQIRVH-TQCKGHPIACDDKYG 263
>gi|51598281|ref|YP_072469.1| hypothetical protein BG0018 [Borrelia garinii PBi]
gi|51572852|gb|AAU06877.1| conserved hypothetical protein [Borrelia garinii PBi]
Length = 327
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 40/217 (18%)
Query: 195 ADEIDYLR-----RLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY------ 243
+ +IDYLR + Y DS I+VLNKP + H + + D + L +
Sbjct: 72 SSQIDYLRPNNIPITIIYEDSNIIVLNKPQGIL--SHPGISHWDDTVVNFLLYHIKRLKI 129
Query: 244 DYNEG---PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMY 300
++NE P +VHRLD+++SG+L+ + ++S L F D +K
Sbjct: 130 NFNEEKVRPGIVHRLDKDTSGVLICAKNINTLSFLAQQFKDKRTNKV------------- 176
Query: 301 QRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI 360
Y A+V G+ G I + + + D ++ ++++ G ++A+TEYR+L
Sbjct: 177 --YIAIVKGNFNSFSGSIESFIDR---DKYNRKKFSVSKDRG----KKALTEYRLLLNF- 226
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
G S + L+P T R HQLRVH + L PI+GD YG
Sbjct: 227 RGYSLLALKPKTGRTHQLRVHM-KYLNFPILGDEVYG 262
>gi|344208099|ref|YP_004793240.1| RluA family pseudouridine synthase [Stenotrophomonas maltophilia
JV3]
gi|343779461|gb|AEM52014.1| pseudouridine synthase, RluA family [Stenotrophomonas maltophilia
JV3]
Length = 377
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 102/202 (50%), Gaps = 28/202 (13%)
Query: 200 YLRRL---VKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRL 255
++RRL + + D+ +L LNKP V G + +++ L A + +LVHRL
Sbjct: 147 FMRRLEQAIVFEDARLLALNKPTGVASHGGSGISFGAIETLRA----LRPGQTLELVHRL 202
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DR++SGLL++ + + ++S L L + D + +RY L+ G +
Sbjct: 203 DRDTSGLLIVAKKRSALSELQALLRE------------DHGAGIRKRYLTLLAGRMPDGV 250
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
+ APL L G ER + G +E+++ +RVL G S+ E+R T R
Sbjct: 251 MTVDAPLHVGLRQGG--ERHVQVNAIG----KESISHFRVL-ERRGGHSYCEVRIETGRT 303
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH A+ LG P+VGD KYG
Sbjct: 304 HQIRVH-AQHLGHPVVGDDKYG 324
>gi|115375226|ref|ZP_01462492.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|310818943|ref|YP_003951301.1| pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
gi|115367788|gb|EAU66757.1| ribosomal large subunit pseudouridine synthase D [Stigmatella
aurantiaca DW4/3-1]
gi|309392015|gb|ADO69474.1| Pseudouridine synthase [Stigmatella aurantiaca DW4/3-1]
Length = 345
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 29/197 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG-PKLVHRLDRESSGLL 263
+ Y+D +LVL+KP +P+ P + L + E + HRLDRE+SGL+
Sbjct: 98 IVYQDDWLLVLDKPAGLPIH---PTARYQKGTLVSLLRERFGERFAEPAHRLDRETSGLV 154
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
+ GRT E+ +L LF S+ + K + CE G P E + AP++
Sbjct: 155 VCGRTTEACRVLGRLFL----SRDVHKEYLAVCE-----------GHPPEDTFFVDAPIA 199
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI-NGCSWIELR--PLTCRKHQLRV 380
+ TE I +A +E+ T ++VL + +G + LR P T R+HQ+R+
Sbjct: 200 E------GTELIRIAVRIDRAEGKESRTRFQVLQRFVRDGAPFALLRCYPETGRQHQIRI 253
Query: 381 HCAEALGTPIVGDYKYG 397
H EA G P+VGD YG
Sbjct: 254 HLHEA-GFPLVGDKMYG 269
>gi|407070993|ref|ZP_11101831.1| ribosomal large subunit pseudouridine synthase C [Vibrio
cyclitrophicus ZF14]
Length = 314
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 127/256 (49%), Gaps = 38/256 (14%)
Query: 144 FVEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLR 202
V +G+++ +K IK ++ G + +P +E K + IPS LN ++ L
Sbjct: 41 IVRKGEVRVNKKRIKAEYKLKAGDLVRIPPVTIE---EKTEENIPSTKLN----KVSELE 93
Query: 203 RLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
+ + Y D +L+LNKP + G + +++AL A + E LVHR+DR++SG
Sbjct: 94 QCIIYEDDHLLILNKPSGTAVHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSG 150
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
+LL+ + + ++ L F + K++ K Y+ALV+G K +++AP
Sbjct: 151 ILLVAKKRSALRHLQAQF----REKTVQKY-----------YFALVMGEWKNSCKVVNAP 195
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L K ++ I+ N +AS+ T ++VL + ++ P+T R HQ+RVH
Sbjct: 196 LLKNEVNS------IVRVNPNGKASE---TRFKVL-EKFQDATLVQASPITGRTHQIRVH 245
Query: 382 CAEALGTPIVGDYKYG 397
A+ G PI D +YG
Sbjct: 246 -AQYTGHPIAWDDRYG 260
>gi|395846486|ref|XP_003795934.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
[Otolemur garnettii]
Length = 378
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 130/272 (47%), Gaps = 48/272 (17%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + Y+D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 96 LSRGILYQDKDLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLD 154
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ KE + LF +++ ++K +YWA+ + P G
Sbjct: 155 KETTGVMVLAWEKEVAHQVQELF----RTRQVAK-----------KYWAITVRVPVPSTG 199
Query: 317 IIHAPL-SKVLLDDGKTERIILAQNSGLEA-----------SQEAMTEYRVLGPMINGCS 364
++ P+ K + + ++ LA + ++ + A+T+Y+VL ++ +
Sbjct: 200 VVDIPIIEKEVQGQQQHHKMTLAPSYRMDNGKMVKVRSNRHAHVAVTQYQVLSSTVSS-A 258
Query: 365 WIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRR 424
+EL+P+T KHQLRVH + L PI+GD+KY W ++ + ++ K L++
Sbjct: 259 LLELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNKLAPQKLSISTLKKLGLQQ 313
Query: 425 PDGLDVQKGSVLSKVPLLHLHCRELKSDNLFP 456
S +P LHLH R+L L P
Sbjct: 314 ---------SKARHIP-LHLHARQLVLPALGP 335
>gi|262046428|ref|ZP_06019390.1| pseudouridine synthase [Lactobacillus crispatus MV-3A-US]
gi|260573299|gb|EEX29857.1| pseudouridine synthase [Lactobacillus crispatus MV-3A-US]
Length = 303
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 101/200 (50%), Gaps = 34/200 (17%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSYDYN-EG--PKLVHRLDRE 258
+ Y D ++V+NKP + P GH P H ++AL + + + EG P +VHR+D++
Sbjct: 81 IVYEDDDVIVVNKPQGMVVHPAPGH-PDHTLVNALLYHSKALAQSPEGFRPGIVHRIDKD 139
Query: 259 SSGLLLMGRT-KESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
+SGLL++ +T K SL L NK + YWA+V G+ E+ G+
Sbjct: 140 TSGLLMIAKTAKARESLEDQLAHKTNK----------------RLYWAIVHGNFAEENGV 183
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I AP+ + D K + +E ++A+T ++VL S IE + T R HQ
Sbjct: 184 IDAPIGRNPYDRKKM--------AVVETGKKAITHFKVL-EQFKDYSLIECQLETGRTHQ 234
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH + +G P+ GD YG
Sbjct: 235 IRVHL-DYIGHPVAGDPLYG 253
>gi|380513165|ref|ZP_09856572.1| pseudouridine synthase [Xanthomonas sacchari NCPPB 4393]
Length = 329
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 23/204 (11%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y D+ +L LNKP V G + +++ L A N+ +LVHRLDR++SGLL
Sbjct: 104 IVYEDARLLALNKPSGVASHGGSGISFGAIETLRA----LRPNQSLELVHRLDRDTSGLL 159
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
++ + + +++ L L + ++ + + +RY L++G + + APL
Sbjct: 160 IVAKKRSALTELQALMREDDRVQG---------RGISKRYLTLLVGRMPDGTMSVDAPLH 210
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
L G ER + +G + +++ +RVL G S+ E+R T R HQ+RVH A
Sbjct: 211 IGLRQGG--ERHVQVNAAG----KPSLSHFRVL-ERRGGHSYCEVRIETGRTHQIRVH-A 262
Query: 384 EALGTPIVGDYKYGW-FVHRRWKQ 406
+ LG P+ GD KYG V++R ++
Sbjct: 263 QHLGHPVAGDDKYGDPAVNKRLRE 286
>gi|336250873|ref|YP_004594583.1| Pseudouridine synthase [Enterobacter aerogenes KCTC 2190]
gi|334736929|gb|AEG99304.1| Pseudouridine synthase [Enterobacter aerogenes KCTC 2190]
Length = 228
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 113/234 (48%), Gaps = 40/234 (17%)
Query: 205 VKYRDSAILVLNKPPKV-PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y D+ +L+++KP + L G P + D++ L D+ G LVHRLD +SGL+
Sbjct: 19 ILYEDAHLLLIDKPSGLLSLSGKNP--QNQDSVHHR-LVRDF-PGCTLVHRLDFGTSGLM 74
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
++ R K + L FS A+ + Y AL+ G P+E +GII AP++
Sbjct: 75 VVARNKTINAALCQQFSQ---------------RAVSKVYHALLCGHPEEDEGIIDAPIA 119
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG----PMING---CSWIELRPLTCRKH 376
K D R+ ++ +G + A + Y+VL P+ G + + L P T R H
Sbjct: 120 K---DPALFPRMAISARNG----KPARSRYQVLSREWLPIAGGSLAVTRVRLLPETGRTH 172
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIE-----PTSGKPYKLRRP 425
QLR+HC + LG PI+G YG V + ++ E P SGK R+P
Sbjct: 173 QLRIHC-QHLGYPILGCDLYGGLVEHQASRLMLHASELHFHHPVSGKAIAARQP 225
>gi|50365205|ref|YP_053630.1| 23S rRNA/tRNA pseudouridine synthase [Mesoplasma florum L1]
gi|50363761|gb|AAT75746.1| 23S rRNA/tRNA pseudouridine synthase [Mesoplasma florum L1]
Length = 311
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 39/226 (17%)
Query: 186 IPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDY 245
+ + T+NP ++D + Y D ILV+NKP + + H N+ + A L D
Sbjct: 67 VKTSTINPEKIDLDIV-----YEDDDILVVNKPNNMVV--HPGAGNTEGTMVNALLGRDA 119
Query: 246 N--------EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACE 297
E P +VHR+D++++GLL++ + +S +LT + +
Sbjct: 120 EFLSTIGGVERPGIVHRIDKQTTGLLIVAKNDKSHQVLTEMLKN---------------H 164
Query: 298 AMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG 357
+Y+ Y ALV G KE +GII AP+ + D + + ++ ++N S+ A+T + V+
Sbjct: 165 EIYKEYVALVWGEIKEDKGIIDAPIGRHQND--RKKMMVTSKN-----SKYAVTNFEVI- 216
Query: 358 PMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 403
++ + ++ T R HQ+RVH + PIV D YG ++
Sbjct: 217 KRLDKTTLVKCAIETGRTHQIRVHF-NFIKHPIVNDPSYGKLAEKQ 261
>gi|127512523|ref|YP_001093720.1| RluA family pseudouridine synthase [Shewanella loihica PV-4]
gi|126637818|gb|ABO23461.1| ribosomal large subunit pseudouridine synthase C [Shewanella
loihica PV-4]
Length = 329
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 31/211 (14%)
Query: 187 PSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDY 245
PS L ++ L + + D AI+VLNKP + + G V ++A+ + +
Sbjct: 94 PSAKLT----KVSQLEGRILFEDKAIIVLNKPAGIAVHGGSGVDFGVIEAMRSLRPQQKF 149
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
E LVHRLD+E+SG+LL+ + + + L L + K M + Y A
Sbjct: 150 LE---LVHRLDKETSGVLLIAKKRRA---LKHLHDQLRYKK------------MQKDYMA 191
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
LV G + +I+APL K+ L G ERI+ G + + T ++++ G +
Sbjct: 192 LVRGEWQNHDKVINAPLLKLTLKSG--ERIVRVNQEG----KPSETRFKIM-QRYQGATL 244
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
++ P+T R HQ+RVHC A G PI D KY
Sbjct: 245 VQASPVTGRTHQIRVHCQYA-GHPIACDEKY 274
>gi|262374097|ref|ZP_06067374.1| 23S rRNA pseudouridylate synthase [Acinetobacter junii SH205]
gi|262311108|gb|EEY92195.1| 23S rRNA pseudouridylate synthase [Acinetobacter junii SH205]
Length = 310
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 26/193 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
V Y D +LV+NKP + + G V + AA Y E L+HR+DR++SGL++
Sbjct: 97 VVYEDEGLLVVNKPSGIAVHGGSGVAYGLIEAMRAATGKKYLE---LIHRIDRDTSGLVM 153
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + + ++ LL L + K+ Y A+V G Q +I APL +
Sbjct: 154 ISKKRSTLKLLQDLLREHKIKKT---------------YAAIVKGQVSLDQQLIDAPLLR 198
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L +G ER + G + + TE++V+ + + PL+ R HQ+RVH
Sbjct: 199 YELANG--ERRVRVTKEG----KPSKTEWKVI-ERFKAATLVHASPLSGRTHQIRVHGL- 250
Query: 385 ALGTPIVGDYKYG 397
++G P++GD KYG
Sbjct: 251 SIGHPLIGDDKYG 263
>gi|330995758|ref|ZP_08319655.1| pseudouridine synthase, RluA family [Paraprevotella xylaniphila YIT
11841]
gi|329574488|gb|EGG56053.1| pseudouridine synthase, RluA family [Paraprevotella xylaniphila YIT
11841]
Length = 522
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 98/216 (45%), Gaps = 38/216 (17%)
Query: 191 LNPNADE----IDYLRRLVKYRDSAILVLNKPP---KVPLKGHLPVHNSMDALAAAALSY 243
+ PNA E +D+ LV Y D ++ +NKP VP KG P + A +
Sbjct: 304 VEPNAHESSKHLDHEPELV-YEDEWMVAVNKPAGMLSVPGKGDAP-----SVWSWARAHF 357
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
GP LVHRLD ++SG+LL+ + E+ L LF + K RY
Sbjct: 358 PEATGPLLVHRLDMDTSGVLLIAKDPETHRQLQQLFETRHIKK---------------RY 402
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
AL+ G+ + +G I PL DD + + A A+T + VL G
Sbjct: 403 VALLDGTVTDDEGFIRLPLCPN-PDDRPRQMVSTAHGKA------AVTRFEVLSRSC-GQ 454
Query: 364 SWIELRPLTCRKHQLRVHCA--EALGTPIVGDYKYG 397
+ + PLT R HQLRVH A E L TPIVGD YG
Sbjct: 455 TRVAFYPLTGRTHQLRVHAAHPEGLDTPIVGDNLYG 490
>gi|15643702|ref|NP_228748.1| ribosomal large subunit pseudouridine synthase C [Thermotoga
maritima MSB8]
gi|222100610|ref|YP_002535178.1| Pseudouridine synthase [Thermotoga neapolitana DSM 4359]
gi|418044892|ref|ZP_12682988.1| pseudouridine synthase, RluA family [Thermotoga maritima MSB8]
gi|4981478|gb|AAD36021.1|AE001757_14 ribosomal large subunit pseudouridine synthase C [Thermotoga
maritima MSB8]
gi|221573000|gb|ACM23812.1| Pseudouridine synthase [Thermotoga neapolitana DSM 4359]
gi|351677974|gb|EHA61121.1| pseudouridine synthase, RluA family [Thermotoga maritima MSB8]
Length = 304
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG--PKLVHRLDRESSGL 262
V Y D LVLNKPP + + VH + L L Y +G P LVHRLD+E+SGL
Sbjct: 87 VLYEDDHYLVLNKPPNIAIHPGKGVH--VATLIEGLLYYGQEKGFSPFLVHRLDKETSGL 144
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L++ + +E+ +LT LF N K Y LV G P E I PL
Sbjct: 145 LVVAKNREAARILTELFKGRNIEKE---------------YVTLVRGVP-ENNMKITIPL 188
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
DG QEA++E + P+ S + ++ T RKHQ+R H
Sbjct: 189 ------DG----------------QEAVSEIVSVKPL-KDVSLLRVKIHTGRKHQIRRHL 225
Query: 383 AEALGTPIVGDYKYG 397
++ +G P+VGD YG
Sbjct: 226 SQ-IGFPVVGDDTYG 239
>gi|403252680|ref|ZP_10918989.1| Pseudouridine synthase [Thermotoga sp. EMP]
gi|402812170|gb|EJX26650.1| Pseudouridine synthase [Thermotoga sp. EMP]
Length = 304
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG--PKLVHRLDRESSGL 262
V Y D LVLNKPP + + VH + L L Y +G P LVHRLD+E+SGL
Sbjct: 87 VLYEDDHYLVLNKPPNIAIHPGKGVH--VATLIEGLLYYGQEKGFSPFLVHRLDKETSGL 144
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L++ + +E+ +LT LF N K Y LV G P E I PL
Sbjct: 145 LVVAKNREAARILTELFKGRNIEKE---------------YVTLVRGVP-ENNMKITIPL 188
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
DG QEA++E + P+ S + ++ T RKHQ+R H
Sbjct: 189 ------DG----------------QEAVSEIVSVKPL-KDVSLLRVKIHTGRKHQIRRHL 225
Query: 383 AEALGTPIVGDYKYG 397
++ +G P+VGD YG
Sbjct: 226 SQ-IGFPVVGDDTYG 239
>gi|312872564|ref|ZP_07732632.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2062A-h1]
gi|311091926|gb|EFQ50302.1| pseudouridine synthase, RluA family [Lactobacillus iners LEAF
2062A-h1]
Length = 300
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 29/154 (18%)
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
N P ++ RLDR++SGL+L+G K +V+ + SD K +++ K Y A
Sbjct: 129 NIKPHIITRLDRDTSGLVLVG--KNAVAHARFNVSD--KQRTIKK------------YHA 172
Query: 306 LVIG--SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
+V G SP + QG+I AP+ K D +R I +E ++++T+YRV+ + G
Sbjct: 173 IVHGNFSPSQLQGVIDAPIGK---KDDPIKRYI------MEGGKDSVTKYRVI-KQVAGA 222
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
S +EL+ LT R HQ+RVH + LG P+ GD+ YG
Sbjct: 223 SLVELQLLTGRTHQIRVHM-QYLGHPLFGDHLYG 255
>gi|253682097|ref|ZP_04862894.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
gi|253561809|gb|EES91261.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
Length = 302
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 42/228 (18%)
Query: 207 YRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSY--DYNEGP--KLVHRLDRES 259
Y D+ I+V+NKP + P K HL L+ L Y D NE +LV+RLD ++
Sbjct: 87 YEDNDIIVVNKPKGIVVHPTKRHLN-----GTLSNGVLYYFNDKNENSIVRLVNRLDMDT 141
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGL+L+ + +S + S+ + K + ++Y A+V G+ E G+I
Sbjct: 142 SGLVLIAKNA---------YSHMALSRDMQK------DDFVKKYLAIVHGNFNEDSGVID 186
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
P+ +V +G +RII E Q ++T ++V+ N S +EL T R HQ+R
Sbjct: 187 KPIYRV--GEGTLKRII------DERGQRSITLFKVIEQYKN-ASLVELTLETGRTHQIR 237
Query: 380 VHCAEALGTPIVGDYKYG----WFVHRRWKQMPRVDI-EPTSGKPYKL 422
VH + ++G PI GD YG ++ R+ ++ I P GK KL
Sbjct: 238 VHLS-SIGHPIYGDSLYGEEEPQYIDRQALHAYKLQIPHPKDGKILKL 284
>gi|28211276|ref|NP_782220.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
gi|28203716|gb|AAO36157.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
Length = 307
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSY-------DYNEGPKLVHRLDRES 259
Y D I+V+NKP + + H V N+ L L++ + E P +VHR+D+++
Sbjct: 86 YEDEDIIVINKPQGMVV--HPGVGNTKGTLVNGLLAHCKSLSNINGEERPGIVHRIDKDT 143
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG+L++ +T + L D +M + Y AL G KE G I
Sbjct: 144 SGILVIAKTNRAHEHLANQLKD---------------HSMLRVYMALTEGVIKEDMGTID 188
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
L + ++RI A ++ + A+T Y+V+ N S IE R T R HQ+R
Sbjct: 189 KDLGR-----NPSDRIKFAV---VDEGKRAVTHYKVINRY-NNNSLIECRLETGRTHQIR 239
Query: 380 VHCAEALGTPIVGDYKYGW 398
VH + +G PIVGD YG+
Sbjct: 240 VHMS-YIGHPIVGDPTYGY 257
>gi|294011514|ref|YP_003544974.1| pseudouridylate synthase [Sphingobium japonicum UT26S]
gi|292674844|dbj|BAI96362.1| pseudouridylate synthase [Sphingobium japonicum UT26S]
Length = 225
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 101/220 (45%), Gaps = 36/220 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESS 260
V + D ++L+KP +P+ G L + N + ++L++ + P VHRLDR++S
Sbjct: 8 VLFIDGEAIILDKPAGLPVDAPRDGSLSLENHL-----SSLTFGFQRWPLPVHRLDRDTS 62
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G LL+ R ++ K + A+ A +RY A+V G P E G I
Sbjct: 63 GCLLLARNPKA-------------HKRFAAAFEAGTVA--KRYVAVVDGVPAEDSGAIDL 107
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
L KV + R+I A+ A + A TE+R + +G + I P T R HQ+R
Sbjct: 108 SLKKV-STPAQGWRMIPAK-----AGKAAFTEWRKIAEK-DGRALIVFTPRTGRTHQIRT 160
Query: 381 HCAEALGTPIVGDYKYG-----WFVHRRWKQMPRVDIEPT 415
H LG I GD YG +H R+ +PR + P
Sbjct: 161 HALHGLGFGIAGDPVYGSGQGPMLLHSRFLSIPRGEKPPA 200
>gi|359427778|ref|ZP_09218823.1| putative pseudouridine synthase [Acinetobacter sp. NBRC 100985]
gi|358236845|dbj|GAB00362.1| putative pseudouridine synthase [Acinetobacter sp. NBRC 100985]
Length = 310
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 29/210 (13%)
Query: 190 TLNPNADEI--DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE 247
T P +D + L R+V Y D +LV+NKP + + G V + AA Y E
Sbjct: 81 TAAPVSDSVAQSLLSRVV-YEDEGLLVVNKPSGIAVHGGSGVAYGLIEALRAATGKKYLE 139
Query: 248 GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
L+HR+DR++SGL+++ + + ++ LL L + K+ Y A+V
Sbjct: 140 ---LIHRIDRDTSGLVMISKKRSTLKLLQDLLREHKIKKT---------------YAAIV 181
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE 367
G Q +I APL + L +G ER + G + + TE++V+ + +
Sbjct: 182 KGQVSLDQQLIDAPLLRYELANG--ERRVRVSKDG----KPSKTEWKVI-ERYKAATLVH 234
Query: 368 LRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
PL+ R HQ+RVH ++G P+VGD KYG
Sbjct: 235 ASPLSGRTHQIRVHGL-SIGHPLVGDDKYG 263
>gi|345870201|ref|ZP_08822155.1| pseudouridine synthase, RluA family [Thiorhodococcus drewsii AZ1]
gi|343922143|gb|EGV32848.1| pseudouridine synthase, RluA family [Thiorhodococcus drewsii AZ1]
Length = 308
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 39/210 (18%)
Query: 197 EIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK------ 250
+++ + R V + D +LV++KP + + G + LSY E +
Sbjct: 74 QMERIERGVLFEDERLLVIDKPSGLAVHG------------GSGLSYGLIESLRQARPGR 121
Query: 251 ---LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
LVHRLDRE+SG L++ + + ++ L L + M +RY AL
Sbjct: 122 ELELVHRLDRETSGCLVISKRRSALRELHQLIRE---------------NGMTKRYRALF 166
Query: 308 IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIE 367
+G ++ ++ APL K +L G ER++ + + ++ R L + +E
Sbjct: 167 VGDLAREKLVVDAPLKKNVLQGG--ERVVRVDQAEGKPARTIFRRLRRLTSKGRVFTLVE 224
Query: 368 LRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVH A LGTP+ GD KYG
Sbjct: 225 AELVTGRTHQIRVHAAH-LGTPLAGDPKYG 253
>gi|335045072|ref|ZP_08538095.1| pseudouridine synthase, RluA family [Oribacterium sp. oral taxon
108 str. F0425]
gi|333758858|gb|EGL36415.1| pseudouridine synthase, RluA family [Oribacterium sp. oral taxon
108 str. F0425]
Length = 304
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 30/199 (15%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSYDYNEG---PKLVHRLDRE 258
+ Y D ++V+NKP + P GH L+ A S G P +VHR+D++
Sbjct: 80 IVYEDDDLMVINKPRGMVVHPAPGHTSGTLVNAVLSHAGESLSSINGVLRPGIVHRIDKD 139
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SGL+L+ + S K+L+K + ++ +RY A+ G KE+QG +
Sbjct: 140 TSGLILVCKNDFS-------------HKALAKQLEE--HSITRRYHAICSGRLKEEQGTV 184
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
AP+ G+ E+ Q + +EA+T YR+L + N S +E R T R HQ+
Sbjct: 185 SAPI-------GRDEKNRKQQAINYKHGKEAITHYRLLENLQN-ASLLECRLETGRTHQI 236
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH +++G P++GD YG
Sbjct: 237 RVHM-KSIGHPLLGDPLYG 254
>gi|336125961|ref|YP_004577917.1| hypothetical protein VAA_02828 [Vibrio anguillarum 775]
gi|335343678|gb|AEH34960.1| Hypothetical protein VAA_02828 [Vibrio anguillarum 775]
Length = 565
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 192 NP-NADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
NP EID + Y+D AI+V+NKP + + + +S+ S D EG
Sbjct: 355 NPAQGKEIDII-----YQDEAIIVVNKPAEFLSVPGVNIQDSVYTRLQQMFSSD--EGLF 407
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
++HRLD +SGLL+ T+ + +KSL K + + +RY AL+ G
Sbjct: 408 VIHRLDMSTSGLLVFALTRRA-------------NKSLQKQF--ITRGVEKRYLALLAGE 452
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
++ G I PL L D + +++ ++ + + E R +G S + L P
Sbjct: 453 LQQSHGDIRLPLRGDL--DDRPRQLVCFEHGKPADTHWQLIECR------DGFSKVYLYP 504
Query: 371 LTCRKHQLRVHCA--EALGTPIVGDYKYG 397
T R HQLRVHCA E L PIVGD YG
Sbjct: 505 KTGRTHQLRVHCAHVEGLNLPIVGDDLYG 533
>gi|348573905|ref|XP_003472731.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 2 [Cavia porcellus]
Length = 345
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 52/252 (20%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDA---LAAAALSYDYNEGPKLVHRLDR 257
L R + ++D I+V+NKP +P+ G V + + A L E L HRLD+
Sbjct: 93 LSRGILHQDKDIVVINKPYGLPVHGGPGVRLCISEVLPILAKVLHGHKAEPLHLCHRLDK 152
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E++G++++ KE + LF +++ ++K +YWA+ + P G+
Sbjct: 153 ETTGVMVLAWEKEVAHQIQELF----RTRQVAK-----------KYWAVTVRVPVPSAGV 197
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ P II +N+ + A+T+Y+VL ++ + +EL+P+T KHQ
Sbjct: 198 VDIP-------------IIEKENARV-----AVTQYQVLSSTVSS-ALVELQPVTGIKHQ 238
Query: 378 LRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLS 437
LRVH + L P++GD+KY + +++P +G +L GL+ K +
Sbjct: 239 LRVHLSFGLDCPVLGDHKYSAWNKLAPQKLP-------AGTLKRL----GLEQSKARYIP 287
Query: 438 KVPLLHLHCREL 449
LHLH R+L
Sbjct: 288 ----LHLHARQL 295
>gi|309803082|ref|ZP_07697181.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
11V1-d]
gi|308164863|gb|EFO67111.1| pseudouridine synthase, RluA family [Lactobacillus iners LactinV
11V1-d]
Length = 307
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 29/154 (18%)
Query: 246 NEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
N P ++ RLDR++SGL+L+G K +V+ + SD K +++ K Y A
Sbjct: 136 NIKPHIITRLDRDTSGLVLVG--KNAVAHARFNVSD--KQRTIKK------------YHA 179
Query: 306 LVIG--SPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
+V G SP + QG+I AP+ K D +R I +E ++++T+YRV+ + G
Sbjct: 180 IVHGNFSPSQLQGVIDAPIGK---KDDPIKRYI------MEGGKDSVTKYRVI-KQVAGA 229
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
S +EL+ LT R HQ+RVH + LG P+ GD+ YG
Sbjct: 230 SLVELQLLTGRTHQIRVHM-QYLGHPLFGDHLYG 262
>gi|441644247|ref|XP_004090574.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein 4
isoform 2 [Nomascus leucogenys]
Length = 346
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 125/272 (45%), Gaps = 59/272 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFRT---------------RQVVKKYWAITVRVPMPSAG 198
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
++ P+ + + Q A+T+Y+VL ++ + +EL+P+T KH
Sbjct: 199 VVDIPIVE-------------------KEVQVAVTQYQVLSSTLSS-ALVELQPITGIKH 238
Query: 377 QLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVL 436
QLRVH + L PI+GD+KY W ++ + + G KL GL+ K +
Sbjct: 239 QLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTLKKL----GLEQSKARYI 287
Query: 437 SKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
LHLH R+L + P L S+ + +L+
Sbjct: 288 P----LHLHARQL----ILPALGSRKEELNLV 311
>gi|61554746|gb|AAX46608.1| hypothetical protein FLJ14494 [Bos taurus]
Length = 304
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 53/222 (23%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPK-----L 251
L R + ++D ++V+NKP +P+ G L + + + LA GPK L
Sbjct: 95 LSRGIVHQDKELVVINKPYGLPVHGGPGVKLCISDVLPVLAKIL------HGPKAKPLHL 148
Query: 252 VHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSP 311
HRLD+E++G++++ KE + LF +++ ++K +YWA+ + P
Sbjct: 149 CHRLDKETTGVMVLAWEKEVAHQVQELF----RTRQVTK-----------KYWAITVRVP 193
Query: 312 KEKQGIIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYR 354
+ G++ P+ + +DDGK R+ ++N+ L A+T+YR
Sbjct: 194 VPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSRNAQL-----AVTQYR 248
Query: 355 VLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
VL ++ + +EL+P+T KHQLRVH + L PI+GD+KY
Sbjct: 249 VLSSSLSA-ALLELQPITGIKHQLRVHMSFGLDCPILGDHKY 289
>gi|422023014|ref|ZP_16369520.1| 23S rRNA pseudouridylate synthase C [Providencia sneebia DSM 19967]
gi|414094744|gb|EKT56408.1| 23S rRNA pseudouridylate synthase C [Providencia sneebia DSM 19967]
Length = 318
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 116/267 (43%), Gaps = 59/267 (22%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K + PG ++ +P R+++R + S L A D
Sbjct: 44 GEVRVNKGRIKPEYK------LAPGDQVRVPPV----RVAERENAPVSAKLGKVAALAD- 92
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
+ Y D +ILV+NKP + G + LS+ EG +
Sbjct: 93 ---CILYEDESILVINKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLE 137
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR++SG+LL+ + + ++ L + M + Y ALV G+
Sbjct: 138 LVHRLDRDTSGILLVAKKRSALRALHEQLR---------------LKQMQKDYMALVRGN 182
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
+ +I APL K +L G ERI+ G + E R + + ++ P
Sbjct: 183 WQSHTKVIQAPLLKNILQSG--ERIVRVNPEGKPSETRFKVEER-----FDNATLVKASP 235
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+T R HQ+RVH A G PI D +YG
Sbjct: 236 VTGRTHQIRVHTLHA-GHPIAFDNRYG 261
>gi|398854364|ref|ZP_10610931.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM80]
gi|398236175|gb|EJN21969.1| pseudouridine synthase, RluA family [Pseudomonas sp. GM80]
Length = 307
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 126/260 (48%), Gaps = 45/260 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+ +R + +P
Sbjct: 36 GEVRVNKGRIKPEYKLQAGDIVR-----VPPV-----RVPERDEPVPLAQ--------GL 77
Query: 201 LRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDR 257
L+RL + + D A++V+NKP + + G ++ + A L D E +LVHRLDR
Sbjct: 78 LQRLEASIVFEDKALIVINKPAGIAVHGGSGLNFGVIE-AFRQLRPDTKE-LELVHRLDR 135
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
++SGLL++ + + S+L L + + + +RY ALV G+
Sbjct: 136 DTSGLLMIAKKR---SMLRHLHEQLR------------GDGVDKRYMALVRGNWATSIKK 180
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K L G ER++ G +EA+T ++VL + + +E +P+T R HQ
Sbjct: 181 VSAPLLKSNLRSG--ERMVEVNEEG----KEALTMFKVLRRFGDFATMVEAKPVTGRTHQ 234
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH A G I GD KYG
Sbjct: 235 IRVHTLHA-GHCIAGDSKYG 253
>gi|392533822|ref|ZP_10280959.1| ribosomal large subunit pseudouridine synthase A (pseudouridylate
synthase, 23S RNA-specific) [Pseudoalteromonas arctica A
37-1-2]
Length = 551
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 29/201 (14%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDAL-AAAALSYDYNEGPKLVHRLDRESSGLL 263
+ Y+D +LV+NKP + +P N D++ + GP +VHRLD +SGLL
Sbjct: 350 IVYKDDDLLVVNKPAEFL---SVPGVNIDDSVYMRIKTQFPEASGPLIVHRLDMSTSGLL 406
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
++ K K+L K + + + +RY ALV G+ E G+I PL
Sbjct: 407 MIALNKRV-------------HKALQKQFIE--RTIDKRYVALVNGNVAEDSGVIDLPL- 450
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
+LD R ++ G + ++T ++VL N + ++L P T R HQLRVHCA
Sbjct: 451 --MLDFDDKPRQMVCYKHG----KPSLTTWQVL-ERNNNITRLQLYPKTGRTHQLRVHCA 503
Query: 384 EALG--TPIVGDYKYGWFVHR 402
+LG PI+GD YG R
Sbjct: 504 HSLGLNMPIIGDTHYGQKADR 524
>gi|118579004|ref|YP_900254.1| RluA family pseudouridine synthase [Pelobacter propionicus DSM
2379]
gi|118501714|gb|ABK98196.1| pseudouridine synthase, RluA family [Pelobacter propionicus DSM
2379]
Length = 306
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 32/227 (14%)
Query: 175 VEGRISKRYDTIPSGTLNPNA-DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLP--VHN 231
V R+ + DTI G + P ++ + + + D ++ LNKP V + P +
Sbjct: 50 VASRMVRSGDTIDVGVMEPGRFRDLVLPQEALLHEDDDLIALNKPAGVNTQ-RTPYQLKG 108
Query: 232 SMDALAAAALSYDYNEGP-KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSK 290
+++ A+ N P +++HRLDR +SG++L + K + + L+ F D K
Sbjct: 109 TLEYWASEYFRRQGNPEPARVIHRLDRGTSGVMLFPKHKRAAAWLSKRFHDGQVEK---- 164
Query: 291 AWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAM 350
RY ALV G+P + + + P+ K I A+ + + A+
Sbjct: 165 -----------RYLALVSGTPGQIEWRVDGPIGK----------IASARYGIVAGGRSAL 203
Query: 351 TEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
TE+R+L G + +E +PLT R HQ+RVH ++ G PIVGD YG
Sbjct: 204 TEFRLLAESC-GYALVEAKPLTGRTHQIRVHL-QSCGLPIVGDGTYG 248
>gi|423321680|ref|ZP_17299551.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB077-07]
gi|405591797|gb|EKB65265.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB077-07]
Length = 303
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 34/200 (17%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSYDYN-EG--PKLVHRLDRE 258
+ Y D ++V+NKP + P GH P H ++AL + + EG P +VHR+D++
Sbjct: 81 IVYEDDDVIVVNKPQGMVVHPAPGH-PDHTLVNALLYHTKALAQSPEGFRPGIVHRIDKD 139
Query: 259 SSGLLLMGRT-KESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
+SGLL++ +T K SL L NK + YWA+V G+ E+ G+
Sbjct: 140 TSGLLMIAKTAKARESLEDQLAHKTNK----------------RLYWAIVHGNFAEENGV 183
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I AP+ + D K + +E ++A+T ++VL S IE + T R HQ
Sbjct: 184 IDAPIGRNPYDRKKM--------AVVETGKKAITHFKVL-EQFKDYSLIECQLETGRTHQ 234
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH + +G P+ GD YG
Sbjct: 235 IRVHL-DYIGHPVAGDPLYG 253
>gi|109109212|ref|XP_001112402.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Macaca mulatta]
Length = 377
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 135/289 (46%), Gaps = 62/289 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++++ ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQNNNLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFR---------------TRQVVKKYWAITVRVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +D+GK ++ ++N+ Q A+T Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDNGKMVKVRHSRNA-----QVAVTRYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
KL GL+ K + LHLH ++L + P L S+ + +L+
Sbjct: 306 KKL----GLEQSKARYIP----LHLHAQQL----ILPALGSRKEDLNLV 342
>gi|254455970|ref|ZP_05069399.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082972|gb|EDZ60398.1| ribosomal large subunit pseudouridine synthase C [Candidatus
Pelagibacter sp. HTCC7211]
Length = 292
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 45/243 (18%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSG-TLNPNADEIDYLRRLVKYRDSAIL 213
K+KTN+V+ F + E I K+ PS + N D+I + +
Sbjct: 40 KVKTNDVIS-----FFNLDFKEQIIQKKIKFEPSKEIIKSNEDQIID-------NNENFI 87
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 273
VLNK + ++G ++ + A + + + P VHRLD+++SG+ +M +T++S
Sbjct: 88 VLNKSSGISVQGGTKSKKNLVDIFAKSEIFQGTK-PYSVHRLDKDTSGVFIMAKTRQSAQ 146
Query: 274 LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 333
LLT LF +++ Y A I H L+K D G+
Sbjct: 147 LLTSLFR---------------LRKVHKTYLA-----------ICHGELNK---DSGEWN 177
Query: 334 RIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 393
++ + + ++A T YRVL + S +EL+P+T RKHQLR ALG PI GD
Sbjct: 178 DDLIRYDGEKKIIEKAKTIYRVLDKN-SEASLVELKPITGRKHQLRKQLY-ALGQPIFGD 235
Query: 394 YKY 396
KY
Sbjct: 236 IKY 238
>gi|403252199|ref|ZP_10918509.1| hypothetical protein EMP_00402 [Thermotoga sp. EMP]
gi|418045364|ref|ZP_12683460.1| pseudouridine synthase, RluA family [Thermotoga maritima MSB8]
gi|351678446|gb|EHA61593.1| pseudouridine synthase, RluA family [Thermotoga maritima MSB8]
gi|402812212|gb|EJX26691.1| hypothetical protein EMP_00402 [Thermotoga sp. EMP]
Length = 271
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 40/218 (18%)
Query: 188 SGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNE 247
T+ P E+ L Y D I+V++KP + + PV + + AL + +
Sbjct: 30 EATVQPEEIELKVL-----YEDRDIIVIDKPGDMIVH---PVPSKLSGTLVNALLHHCKD 81
Query: 248 --------GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAM 299
P +VHRLD+E+SG++++ + + +SLSK + D +
Sbjct: 82 LQGVGGKLRPGIVHRLDKETSGVIVVAKNDFA-------------HQSLSKQFKD--RKV 126
Query: 300 YQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
+ Y LV G K +G+I PL++ ++ + + +E +EA+TEYRVL
Sbjct: 127 KKTYILLVKGKMKNDEGVIDLPLAR--------HPVLRIKMAVVETGKEAITEYRVLKRF 178
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ + + P T R HQ+RVH ++LG PI+GD YG
Sbjct: 179 DDVATLVLAFPKTGRTHQIRVHM-KSLGHPIMGDKIYG 215
>gi|229526265|ref|ZP_04415669.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae bv.
albensis VL426]
gi|229336423|gb|EEO01441.1| pseudouridylate synthase LSU rRNA-specific [Vibrio cholerae bv.
albensis VL426]
Length = 570
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y+D AI+V+NKP + + VH+S+ L + EG +H LD +SGLL+
Sbjct: 369 IVYQDDAIVVVNKPAEFLSVPGVHVHDSV--LTRLKAQFTQAEGVFALHCLDMSTSGLLV 426
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
T+ + +K L K + A+ +RY AL+ G E QG I PL
Sbjct: 427 FALTRRA-------------NKQLQKQF--ISRAVQKRYVALIEGKLSETQGEIQLPLCG 471
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L DD +++ Q + A+T + + N + + L P T R HQLRVHCA
Sbjct: 472 DL-DDRPRQKVCWQQG------KPALTHWETVQVEQNR-TRVYLYPHTGRTHQLRVHCAH 523
Query: 385 ALG--TPIVGDYKYG 397
LG TPIVGD YG
Sbjct: 524 HLGLNTPIVGDDLYG 538
>gi|227878615|ref|ZP_03996537.1| pseudouridylate synthase [Lactobacillus crispatus JV-V01]
gi|256843219|ref|ZP_05548707.1| pseudouridine synthase [Lactobacillus crispatus 125-2-CHN]
gi|256850423|ref|ZP_05555851.1| pseudouridine synthase [Lactobacillus crispatus MV-1A-US]
gi|293380626|ref|ZP_06626679.1| pseudouridine synthase, RluA family [Lactobacillus crispatus 214-1]
gi|295692991|ref|YP_003601601.1| pseudouridine synthase [Lactobacillus crispatus ST1]
gi|312977447|ref|ZP_07789195.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
crispatus CTV-05]
gi|423318686|ref|ZP_17296563.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB049-03]
gi|227861792|gb|EEJ69389.1| pseudouridylate synthase [Lactobacillus crispatus JV-V01]
gi|256614639|gb|EEU19840.1| pseudouridine synthase [Lactobacillus crispatus 125-2-CHN]
gi|256712820|gb|EEU27813.1| pseudouridine synthase [Lactobacillus crispatus MV-1A-US]
gi|290922813|gb|EFD99762.1| pseudouridine synthase, RluA family [Lactobacillus crispatus 214-1]
gi|295031097|emb|CBL50576.1| Pseudouridine synthase [Lactobacillus crispatus ST1]
gi|310895878|gb|EFQ44944.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
crispatus CTV-05]
gi|405593417|gb|EKB66865.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB049-03]
Length = 303
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 34/200 (17%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSYDYN-EG--PKLVHRLDRE 258
+ Y D ++V+NKP + P GH P H ++AL + + EG P +VHR+D++
Sbjct: 81 IVYEDDDVIVVNKPQGMVVHPAPGH-PDHTLVNALLYHTKALAQSPEGFRPGIVHRIDKD 139
Query: 259 SSGLLLMGRT-KESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
+SGLL++ +T K SL L NK + YWA+V G+ E+ G+
Sbjct: 140 TSGLLMIAKTAKARESLEDQLAHKTNK----------------RLYWAIVHGNFAEENGV 183
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I AP+ + D K + +E ++A+T ++VL S IE + T R HQ
Sbjct: 184 IDAPIGRNPYDRKKM--------AVVETGKKAITHFKVL-EQFKDYSLIECQLETGRTHQ 234
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH + +G P+ GD YG
Sbjct: 235 IRVHL-DYIGHPVAGDPLYG 253
>gi|218709011|ref|YP_002416632.1| ribosomal large subunit pseudouridine synthase C [Vibrio splendidus
LGP32]
gi|218322030|emb|CAV18069.1| Ribosomal large subunit pseudouridine synthase C [Vibrio splendidus
LGP32]
Length = 314
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 127/256 (49%), Gaps = 38/256 (14%)
Query: 144 FVEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLR 202
V +G+++ +K IK ++ G + +P +E K + +PS LN ++ L
Sbjct: 41 IVRKGEVRVNKKRIKAEYKLKAGDLVRIPPVTIE---EKTEENVPSTKLN----KVSELE 93
Query: 203 RLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
+ + Y D +L+LNKP + G + +++AL A + E LVHR+DR++SG
Sbjct: 94 QCIIYEDDHMLILNKPSGTAVHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSG 150
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
+LL+ + + ++ L F + K++ K Y+ALV+G K +++AP
Sbjct: 151 ILLVAKKRSALRHLQAQF----REKTVQKY-----------YFALVMGEWKNSCKVVNAP 195
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L K ++ I+ N +AS+ T ++VL + I+ P+T R HQ+RVH
Sbjct: 196 LLKNEVNS------IVRVNPNGKASE---TRFKVL-EKFQEATLIQASPITGRTHQIRVH 245
Query: 382 CAEALGTPIVGDYKYG 397
A+ G PI D +YG
Sbjct: 246 -AQYTGHPIAWDDRYG 260
>gi|149911608|ref|ZP_01900220.1| ribosomal large subunit pseudouridine synthase C [Moritella sp.
PE36]
gi|149805329|gb|EDM65342.1| ribosomal large subunit pseudouridine synthase C [Moritella sp.
PE36]
Length = 317
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 63/269 (23%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ +++ PV R+S+ PS N D +
Sbjct: 46 GEVRVNKGRIKPEYKLQPEDIVR-----IPPV-----RVSETEAISPSA----NLDSVRA 91
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK---------- 250
L + Y D ++V+NKP + + G + LS+ EG +
Sbjct: 92 LESQIIYEDDYLIVINKPSGMAVHG------------GSGLSFGLIEGLRAIRPDSRFLE 139
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDA--CEAMYQRYWALVI 308
LVHRLDR++SG LL V K +S KA ++ + M + Y ALV
Sbjct: 140 LVHRLDRDTSGCLL-----------------VAKKRSTLKALHEQLRLKTMRKDYQALVA 182
Query: 309 GSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIEL 368
G+ I++APL K + G ER++ + G +E+ T + ++ +G + ++
Sbjct: 183 GAWPRSSRIVNAPLLKNTVSSG--ERLVRVDSEG----KESQTRFSIIQRYEHG-TLVQA 235
Query: 369 RPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P+T R HQ+RVH A G PI D KYG
Sbjct: 236 SPITGRTHQIRVHALHA-GHPIACDDKYG 263
>gi|363897267|ref|ZP_09323806.1| hypothetical protein HMPREF9624_00368 [Oribacterium sp. ACB7]
gi|361958764|gb|EHL12061.1| hypothetical protein HMPREF9624_00368 [Oribacterium sp. ACB7]
Length = 304
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 30/199 (15%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSYDYNEG---PKLVHRLDRE 258
+ Y D ++V+NKP + P GH L+ A S G P +VHR+D++
Sbjct: 80 IVYEDDDLMVINKPRGMVVHPAPGHTSGTLVNAVLSHAGESLSSINGVLRPGIVHRIDKD 139
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
+SGL+L+ + S K+L+K + ++ +RY A+ G KE+QG +
Sbjct: 140 TSGLILVCKNDFS-------------HKALAKQLEE--HSITRRYHAICSGRLKEEQGTV 184
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
AP+ G+ E+ Q + +EA+T YR+L + N S +E R T R HQ+
Sbjct: 185 SAPI-------GRDEKNRKQQAINYKHGKEAITHYRLLENLQN-ASLLECRLETGRTHQI 236
Query: 379 RVHCAEALGTPIVGDYKYG 397
RVH +++G P++GD YG
Sbjct: 237 RVHM-KSIGHPLLGDPLYG 254
>gi|381157162|ref|ZP_09866396.1| pseudouridine synthase, RluA family [Thiorhodovibrio sp. 970]
gi|380881025|gb|EIC23115.1| pseudouridine synthase, RluA family [Thiorhodovibrio sp. 970]
Length = 338
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 120/264 (45%), Gaps = 46/264 (17%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP + +E G + LP + T + + P A
Sbjct: 65 GEVRVNRGRVKPATR------LEAGDSLRLPPLRL---------TPAAPAVTPTAGLQAR 109
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMD---ALAAAALSYDYNEGPKLVHRLDR 257
L V Y D +++++KP L VH L A + + +LVHRLDR
Sbjct: 110 LLDAVLYEDEGLILIDKPSG------LAVHGGSGLSLGLIEALRAMRPQQSLELVHRLDR 163
Query: 258 ESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
E+SG LL+ + ++L WL + + + + +RY AL++G ++
Sbjct: 164 ETSGCLLISKKP---AILRWLHQQLREGQ------------VRKRYQALLVGGLPRERVD 208
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ APL K LL G ER++ ++ +EA T +R + G + +++R T R HQ
Sbjct: 209 VRAPLRKNLLRGG--ERVVRVDHA---EGKEARTGFR-RAETLAGFTLVDVRLGTGRTHQ 262
Query: 378 LRVHCAEALGTPIVGDYKYGWFVH 401
+RVH A LG + GD KYG H
Sbjct: 263 IRVHAAH-LGAAVAGDDKYGDATH 285
>gi|86147922|ref|ZP_01066226.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio sp. MED222]
gi|85834247|gb|EAQ52401.1| 23S rRNA ribosomal pseudouridine synthase [Vibrio sp. MED222]
Length = 314
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 127/256 (49%), Gaps = 38/256 (14%)
Query: 144 FVEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLR 202
V +G+++ +K IK ++ G + +P +E K + +PS LN ++ L
Sbjct: 41 IVRKGEVRVNKKRIKAEYKLKAGDLVRIPPVTIE---EKTEENVPSTKLN----KVSELE 93
Query: 203 RLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
+ + Y D +L+LNKP + G + +++AL A + E LVHR+DR++SG
Sbjct: 94 QCIIYEDDHMLILNKPSGTAVHGGSGLKFGAIEALRALRPDARFLE---LVHRIDRDTSG 150
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
+LL+ + + ++ L F + K++ K Y+ALV+G K +++AP
Sbjct: 151 ILLVAKKRSALRHLQAQF----REKTVQKY-----------YFALVMGEWKNSCKVVNAP 195
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L K ++ I+ N +AS+ T ++VL + I+ P+T R HQ+RVH
Sbjct: 196 LLKNEVNS------IVRVNPNGKASE---TRFKVL-EKFQEATLIQASPITGRTHQIRVH 245
Query: 382 CAEALGTPIVGDYKYG 397
A+ G PI D +YG
Sbjct: 246 -AQYTGHPIAWDDRYG 260
>gi|237735862|ref|ZP_04566343.1| RNA pseudouridylate synthase [Mollicutes bacterium D7]
gi|229381607|gb|EEO31698.1| RNA pseudouridylate synthase [Coprobacillus sp. D7]
Length = 294
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 99/194 (51%), Gaps = 29/194 (14%)
Query: 207 YRDSAILVLNKPPKV-PLKGHLPVHNSMDALAAAAL-SYDYNEGPKLVHRLDRESSGLLL 264
Y D ++V+NKP + + G + L L S + N +VHRLD+E+SG+LL
Sbjct: 85 YEDRELIVINKPAGLLSMAGGNEKEKTAYHLVGEYLKSKNKNARVFIVHRLDKETSGVLL 144
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQR-YWALVIGSPKEKQGIIHAPLS 323
+ +++ K+K L WND Y+R Y A++ G K+K G I
Sbjct: 145 FAK------------NEIIKNK-LQNNWNDIV---YKRGYLAIIEGKLKKKHGTI----- 183
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K LD+ KT+ + +A N + A+T Y+VL S IE+ T RK+Q+RVH
Sbjct: 184 KNHLDESKTQMVYIANNG---KGKLAITNYKVLKES-RYNSLIEVFLETGRKNQIRVHM- 238
Query: 384 EALGTPIVGDYKYG 397
++LG IVGD KYG
Sbjct: 239 QSLGHSIVGDKKYG 252
>gi|254521304|ref|ZP_05133359.1| pseudouridylate synthase [Stenotrophomonas sp. SKA14]
gi|219718895|gb|EED37420.1| pseudouridylate synthase [Stenotrophomonas sp. SKA14]
Length = 307
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 107/212 (50%), Gaps = 29/212 (13%)
Query: 200 YLRRL---VKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRL 255
++RRL + + D+ +L LNKP V G + +++ L A + +LVHRL
Sbjct: 77 FMRRLEQAIVFEDARLLALNKPTGVASHGGSGISFGAIETLRA----LRPGQTLELVHRL 132
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
DR++SGLL++ + + ++S L L + D + +RY L+ G +
Sbjct: 133 DRDTSGLLIVAKKRSALSELQALLRE------------DHGAGIRKRYLTLLTGRMPDGV 180
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
+ APL L G ER + G +E+++ +RVL G S+ E+R T R
Sbjct: 181 MTVDAPLHVGLRQGG--ERHVQVNAIG----KESISHFRVL-ERRGGHSYCEVRIETGRT 233
Query: 376 HQLRVHCAEALGTPIVGDYKYGW-FVHRRWKQ 406
HQ+RVH A+ LG P+ GD KYG V++R ++
Sbjct: 234 HQIRVH-AQHLGHPVAGDDKYGDPVVNKRLRE 264
>gi|451944220|ref|YP_007464856.1| ribosomal large subunit pseudouridine synthase C [Corynebacterium
halotolerans YIM 70093 = DSM 44683]
gi|451903607|gb|AGF72494.1| ribosomal large subunit pseudouridine synthase C [Corynebacterium
halotolerans YIM 70093 = DSM 44683]
Length = 278
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGL 262
+ + D ++VLNKP V + V + L + + P +L HRLDRE+SGL
Sbjct: 48 ILHEDDTLIVLNKPADVAVH----VGTGVSGGVIEVLRHLRPDQPDLELAHRLDRETSGL 103
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
L++ +T + L + D S SL + RY ALV G+ K + A L
Sbjct: 104 LMIAKTPAMLRHLQQVLRD---SSSLDR-----------RYIALVRGAWPTKLTEVRARL 149
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
+ TER +L G Q A T + +L N + ++ R +T RKHQ+RVH
Sbjct: 150 RR-------TERTVLVDGDG----QTACTRFSILRRFGNRATLVQARLVTGRKHQIRVHT 198
Query: 383 AEALGTPIVGDYKYG 397
A G PI GD KYG
Sbjct: 199 RHA-GHPIAGDQKYG 212
>gi|301782173|ref|XP_002926501.1| PREDICTED: RNA pseudouridylate synthase domain-containing protein
4-like isoform 1 [Ailuropoda melanoleuca]
gi|281338700|gb|EFB14284.1| hypothetical protein PANDA_016152 [Ailuropoda melanoleuca]
Length = 377
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 133/289 (46%), Gaps = 62/289 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LSRGIVHQDMDLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ KE + LF +++ ++K +YWA+ + P G
Sbjct: 154 KETTGVMVLAWEKEVAHQVQELF----RTRQVAK-----------KYWAVTVRVPVPPAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + ++DGK R +N+ A+T+Y+VL
Sbjct: 199 VVDIPVIEKEVQGQQQHYKMTLSPSYRMEDGKMVRTRRDRNA-----HTAVTQYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + K
Sbjct: 254 LSS-ALVELQPITGVKHQLRVHLSFGLDCPILGDHKYS-----DWNKLAPQKLSLGTLKK 307
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLL 468
L++ + LHLH R+L + P L S+ + +L+
Sbjct: 308 LGLQQAKARHIP----------LHLHARQL----ILPALGSRKEELNLV 342
>gi|254294411|ref|YP_003060434.1| pseudouridine synthase [Hirschia baltica ATCC 49814]
gi|254042942|gb|ACT59737.1| pseudouridine synthase [Hirschia baltica ATCC 49814]
Length = 272
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 199 DYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRE 258
DY+ L+ D +IL NKP + + P + DAL + + + P+++HRLD
Sbjct: 32 DYMDELLLGEDDSILAFNKPSGLACQTRSPADRTFDALLQVYVKRN-GKRPRMLHRLDML 90
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK-QGI 317
+SG+++ RTK + S F Y+ Y A+V G EK +G+
Sbjct: 91 TSGVIIAARTKPATSFFQQTFER---------------REAYKSYLAIVRGPAFEKSEGV 135
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGL--EASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
I A L + K + L + + E +Q+A T Y VL N ++ L P T R
Sbjct: 136 IDAHLQRY----QKEPNLALMRPCDVDGEGAQDARTRYLVLSSQ-NDYHFLLLTPETGRT 190
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH E G PI+ D YG
Sbjct: 191 HQLRVHL-EHFGRPILADPYYG 211
>gi|217976505|ref|YP_002360652.1| pseudouridine synthase [Methylocella silvestris BL2]
gi|217501881|gb|ACK49290.1| pseudouridine synthase [Methylocella silvestris BL2]
Length = 234
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 29/193 (15%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMG 266
YRD +LV++KP V + +++A A L + P L HRLDR++SG L++G
Sbjct: 19 YRDGLMLVIDKPAGVAVHRGPKGGANLEA-AFHWLRFGLPRSPALAHRLDRDTSGCLVLG 77
Query: 267 RTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVL 326
R +++ L LF K+ Y ++V G P ++G+I PL +
Sbjct: 78 RHHKALEKLGLLFKQGKIGKT---------------YVSIVNGRPGAEEGLIDLPLGRRD 122
Query: 327 LDDGKTERIILAQNSGLEASQEAMTEYRVL--GPMINGCSWIELRPLTCRKHQLRVHCAE 384
G ++ A Q + T +R+L GP + + L PLT R HQLRVHCA
Sbjct: 123 ETRGWWMKVD-------PAGQSSQTRWRILAKGP---AHTLLALTPLTGRTHQLRVHCA- 171
Query: 385 ALGTPIVGDYKYG 397
A+G I+GD YG
Sbjct: 172 AMGFSILGDPIYG 184
>gi|421613668|ref|ZP_16054741.1| ribosomal large subunit pseudouridine synthase D [Rhodopirellula
baltica SH28]
gi|408495627|gb|EKK00213.1| ribosomal large subunit pseudouridine synthase D [Rhodopirellula
baltica SH28]
Length = 231
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 24/197 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----LVHRLDRESS 260
V Y D+ +LV+NKP K+ G ++ +L + N+ K +V RLD +S
Sbjct: 6 VIYEDNHLLVVNKPTKLATMG-AAGQPTLHSLGCDYIRRTCNKPNKVYLGIVSRLDSMTS 64
Query: 261 GLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHA 320
G+++M RT ++ S LT F+ N + + + Y A+V G +++QG +
Sbjct: 65 GVIVMARTSKAASRLTPQFA------------NHSGDGAKKTYLAVVSGRVEQQQGTL-- 110
Query: 321 PLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRV 380
+ V DD R+ +A +S +A +EA EY V G + ++++PLT RKHQ+R+
Sbjct: 111 -VDDVYKDDA-AHRMRVAHHSRSDA-KEARLEYEVSG-YDRELTLLKVKPLTGRKHQIRL 166
Query: 381 HCAEALGTPIVGDYKYG 397
AEA G PI+GD KYG
Sbjct: 167 QWAEA-GFPILGDTKYG 182
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,351,642,326
Number of Sequences: 23463169
Number of extensions: 369588530
Number of successful extensions: 779365
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 11166
Number of HSP's that attempted gapping in prelim test: 757280
Number of HSP's gapped (non-prelim): 13010
length of query: 490
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 343
effective length of database: 8,910,109,524
effective search space: 3056167566732
effective search space used: 3056167566732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)