BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042463
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XET6|PUS3_ARATH RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana
GN=At1g78910 PE=2 SV=1
Length = 478
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/479 (69%), Positives = 388/479 (81%), Gaps = 24/479 (5%)
Query: 35 MWKKQAEF--IWLSS-IRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFP 91
MWK + F I+L+ IR YSR++PP +VIRV+ VAHLGPPK GP PRQL+SLPPFP
Sbjct: 1 MWKAKTCFRQIYLTVLIRRYSRVAPPPSSVIRVTNN-VAHLGPPKQGPLPRQLISLPPFP 59
Query: 92 GHNLPGKHWGRQC-------HVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSF 144
GH LPGK+ G HVTA+SWVKYYF+E+ D IQ+HF KGLVQME D+
Sbjct: 60 GHPLPGKNAGADGDDGDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDAS 119
Query: 145 VE-QGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRR 203
E + P+RKIK NEVM+ G +I+LPVS+ E RISKRYDTIPSGTL PNADEI YL+R
Sbjct: 120 REKEDGAIPMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQR 179
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLL 263
LV+++DSAI+VLNKPPK+P+KG++P+HNSMDALAAAALS+ +EGP+LVHRLDRE+SGLL
Sbjct: 180 LVRFKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRETSGLL 239
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
+MGRTKES+ L +FSD S KAWN ACEAMYQ+YWALVIGSPKEK+G+I APLS
Sbjct: 240 VMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLISAPLS 299
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
KVLLDDGKT+R++LAQ SG EASQ+A+TEY+VLGP INGCSW+ELRP+T RKHQLRVHCA
Sbjct: 300 KVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRVHCA 359
Query: 384 EALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLH 443
EALGTPIVGDYKYGWFVH+RWKQMP+VDIEPT+GKPYKLRRP+GLDVQKGSVLSKVPLLH
Sbjct: 360 EALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLH 419
Query: 444 LHCRELKSDNLF------------PTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 490
LHCRE+ N+ P + D PDLLRFVASMPSHMKISWNLMSSYLV
Sbjct: 420 LHCREMVLPNIAKFLHVMNQQETEPLHTGIIDKPDLLRFVASMPSHMKISWNLMSSYLV 478
>sp|Q0J4D4|PUS3_ORYSJ RNA pseudourine synthase 3, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0520100 PE=2 SV=1
Length = 475
Score = 587 bits (1514), Expect = e-167, Method: Compositional matrix adjust.
Identities = 298/447 (66%), Positives = 349/447 (78%), Gaps = 16/447 (3%)
Query: 60 AVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGKHWGRQC----HVTAVSWVKYY 115
V+RV VA LG PK GP+PRQLLSLPPFPG GR+ VTAVSWVK+Y
Sbjct: 29 VVVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPGRKAAAPRRVTAVSWVKHY 88
Query: 116 FDEVQDSVIQSHFNKGLVQMECANMGDSF-VEQGQMKPIRKIKTNEVMEPGARIFLPVSM 174
+V V+Q+HFNK LV EC++ S + Q ++KIK N+VMEPG RI LPVS+
Sbjct: 89 LADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSV 148
Query: 175 VEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMD 234
EG I KRY+TIP+ TL+PN DEI+YLRRLV ++DSAILVLNKPPKVP+KG+LPVHNSMD
Sbjct: 149 AEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVPMKGNLPVHNSMD 208
Query: 235 ALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWND 294
LAAAALSY EGPKLVHRLDRESSGLLL GRTKES + L WLF+ VN +K+ S+ WN
Sbjct: 209 VLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWNA 268
Query: 295 ACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYR 354
ACEA QRYWALVIG+PKE++GII APLSKVLLDDGK ER+ILA SG++ +QEA+T YR
Sbjct: 269 ACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYR 328
Query: 355 VLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEP 414
V+GP I+GCSWIELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWKQ P+ D EP
Sbjct: 329 VMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEP 388
Query: 415 TSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSK-----------PD 463
+G+PYKLRRP+GL++QKGSVLSKVPLLHLHCRE+ N+ LSS +
Sbjct: 389 FTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENGAPWSKE 448
Query: 464 GPDLLRFVASMPSHMKISWNLMSSYLV 490
P+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 449 KPNLLRFIAPMPAHMKISWNIMSSYLV 475
>sp|Q9LT72|PUS4_ARATH RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana
GN=At3g19440 PE=2 SV=1
Length = 477
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/426 (36%), Positives = 238/426 (55%), Gaps = 35/426 (8%)
Query: 85 LSLPPFPGHNLPGKHWGR--------------QCHVTAVSWVKYYFDEVQDSVIQSHFNK 130
L+LPPF + G G+ TA+ W+ ++ +++Q F
Sbjct: 56 LTLPPF-SPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRTLVQKLFRL 114
Query: 131 GLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGT 190
V+ E + D ++ Q ++++ E + G RI+LP+S+ + + +
Sbjct: 115 RQVRREMSMSVDG--DELQRSQLKRVAAKESLNVGDRIYLPLSVDND--TPQTPPAKKES 170
Query: 191 LNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK 250
+ +E ++ LV Y+D AI+VLNKP + ++G + S+D LAA+ L +D +E P+
Sbjct: 171 FQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPR 230
Query: 251 LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGS 310
LVHRLDR+ SGLL++ RT+ + ++L +F + S + +++ ++Y ALVIG
Sbjct: 231 LVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGAS-AYGVKKNVKSLKRKYMALVIGC 289
Query: 311 PKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRP 370
P ++G I APL KV++DDGK+ERI + N L ++Q A+TEYRV+ +G +W+ELRP
Sbjct: 290 PPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRP 349
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPT--SGKPYKLRRPDGL 428
LT RKHQLRVHCAE LGTPIVGDYKYGW H+ + + PT S P+ GL
Sbjct: 350 LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSSENNPTKQSSSPF------GL 403
Query: 429 DVQKGSVLSKVPLLHLHCRELKSDNLFPTLS-------SKPDGPDLLRFVASMPSHMKIS 481
D+ G V SK P LHLH +++ N+ L S D L+F A +PSHM++S
Sbjct: 404 DLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDISDLDSLKFDAPLPSHMQLS 463
Query: 482 WNLMSS 487
+NL+ S
Sbjct: 464 FNLLKS 469
>sp|Q69K07|PUS4_ORYSJ RNA pseudourine synthase 4, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os09g0103500 PE=2 SV=1
Length = 448
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/281 (37%), Positives = 171/281 (60%), Gaps = 28/281 (9%)
Query: 106 VTAVSWVKYYFDEVQDSVIQSHF-----NKGLVQMECANMGDSFVEQGQMKPIRKIKTNE 160
TA+ WV+ ++ S++Q F K +V E ++ D+ EQ ++ R++ +
Sbjct: 84 ATAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTAEISS-ADASAEQHRL---RRVSAKD 139
Query: 161 VMEPGARIFLPVSMVEGRI---SKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNK 217
+ PG +FLPV++ E + +K++D N +EI++LR L Y+D AI+V+NK
Sbjct: 140 QLMPGDILFLPVNLKESSVAEKTKKFD---------NRNEINFLRGLEIYKDEAIIVVNK 190
Query: 218 PPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTW 277
PP +P++G + + NS+D LA+ + +E P+LVHRLDR+ SG+L++GR + S S+L
Sbjct: 191 PPGMPVQGGVGIKNSIDVLASM-FEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHA 249
Query: 278 LFSDVNKSKSLSKAWNDACEAMYQR-YWALVIGSPKEKQGIIHAPLSKVLLDDGKTERII 336
+F + + A D + + QR Y ALVIG+P+ +G++ APL+K+LL DGK+ER+
Sbjct: 250 IFRE-----KTADALADGTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLT 304
Query: 337 LAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
+ +S + Q+A+TEYRV+ G +W+EL P T RKHQ
Sbjct: 305 IRASSNAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQ 345
>sp|Q28C59|RUSD4_XENTR RNA pseudouridylate synthase domain-containing protein 4 OS=Xenopus
tropicalis GN=rpusd4 PE=2 SV=1
Length = 324
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 142/296 (47%), Gaps = 63/296 (21%)
Query: 194 NADEIDYLRRL---VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYN---E 247
NA I YLR L V D ++++NKP +P+ G V S+ +L A + + E
Sbjct: 37 NAPTIVYLRELKSQVVREDPELVLVNKPHGLPVHGGPTVERSVASLLPALAKHHFGWKAE 96
Query: 248 GPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV 307
KL HRLDR+++G L++ RT E+ ++ + +A + +++ YWAL
Sbjct: 97 PLKLCHRLDRDTTGALILARTTEA-------------AERVQQALRE--REVHRVYWALC 141
Query: 308 IGSPKEKQGIIHAPLS-----------KVLL-------DDGKTERIILAQNSGLEASQEA 349
+G+P ++GI+ P+ K+ L ++G ER+ + +++ EA
Sbjct: 142 LGTPSPREGILDIPIMEKETSGPQKHYKMALSPRFRVSEEGAVERVRVPRSA-----HEA 196
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR 409
+T YR LG +G S +EL P+T KHQLRVH A L PI+GD+KY + R Q P
Sbjct: 197 VTRYRTLG-AASGASLVELHPITGVKHQLRVHLALGLNCPILGDHKYSHW-GRLAPQKP- 253
Query: 410 VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCREL---KSDNLFPTLSSKP 462
P + R GL V + LS LHLH +L SD P + P
Sbjct: 254 ---------PDSVLRALGLTVPQARTLS----LHLHAVQLTLPSSDGSTPIVLQCP 296
>sp|O66114|Y505_ZYMMO Uncharacterized RNA pseudouridine synthase ZMO0505 OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=ZMO0505 PE=3 SV=2
Length = 219
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 101/201 (50%), Gaps = 31/201 (15%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLK----GHLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L + V + D+ ++++KP +P+ G L + N + A+L + + P +VHRLD
Sbjct: 4 LAKRVLFIDAEAMIIDKPAGLPVTSVRDGSLSLENYL-----ASLCFGFKRWPSIVHRLD 58
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
R++SG LL+ R + L+ FS K YWA++ G P++ +G
Sbjct: 59 RDTSGCLLLARNPKMHRRLSEAFSQGQVKKC---------------YWAILEGVPEKNEG 103
Query: 317 IIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKH 376
II PL K+ K+ I+A + G + A+T + +L G S + RP T R H
Sbjct: 104 IIDLPLLKI--SSPKSGWRIVADDKG----KRAVTHWEILAKN-KGRSLVAFRPETGRTH 156
Query: 377 QLRVHCAEALGTPIVGDYKYG 397
QLRVH A LG PIVGD YG
Sbjct: 157 QLRVHAATGLGLPIVGDPFYG 177
>sp|Q68XB2|RLUC_RICTY Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) GN=rluC PE=3
SV=1
Length = 303
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDHLIAINKPASLATQGGSKINLSIDS----ALKYLNYQGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + ++Y+A+ G P + GI+ + + K
Sbjct: 149 IAKNYLS-------------SVKLHDAFKE--KLVIKKYFAITYGRPVKNVGIVKSNIGK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G+ +I I + N L A+T Y++L + N IE P+T R HQLR+H
Sbjct: 194 ---SKGRMFKITDIDSDNGKL-----AITYYKLLKSLNNNLFLIEFMPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AQLLGCPILGDDKYG 259
>sp|Q9ZDR7|RLUC_RICPR Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
prowazekii (strain Madrid E) GN=rluC PE=3 SV=1
Length = 303
Score = 89.0 bits (219), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 28/193 (14%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDHLIAINKPASLATQGGSKINLSIDS----ALKYLNYQGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + ++Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHNAFKE--KLVIKKYFAITYGRPVKNVGTVKSNIGK 193
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
R+ N + + A+T Y++L + N IE P+T R HQLR+H A+
Sbjct: 194 ------SKRRLSKIANIDSDDGKLAITYYKLLKSLNNNLFLIEFMPVTGRMHQLRLH-AQ 246
Query: 385 ALGTPIVGDYKYG 397
LG PI+GD KYG
Sbjct: 247 LLGCPILGDDKYG 259
>sp|Q1RJX7|RLUC_RICBR Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
bellii (strain RML369-C) GN=rluC PE=3 SV=1
Length = 301
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 98/194 (50%), Gaps = 30/194 (15%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D I+ +NKP + +G ++ S+D+ AL Y ++G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDNIIAINKPAGLATQGGSKINLSVDS----ALKYLNSQGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S + D K K + K Y A+ G P + QG + + K
Sbjct: 149 IAKNYVS----SVKLHDAFKEKLVEKT-----------YLAVTYGKPIKDQGEVKTNIEK 193
Query: 325 VLLDDGKTERII-LAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
G +I + N+G + A+T Y++L + N +E P+T R HQLR+H A
Sbjct: 194 ---SKGSIPKITDINDNNG----KLAITYYKLLKSLTNNLFLVEFIPITGRMHQLRLH-A 245
Query: 384 EALGTPIVGDYKYG 397
+ LG PI GD KYG
Sbjct: 246 KLLGCPIFGDNKYG 259
>sp|Q4UKQ3|RLUC_RICFE Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) GN=rluC PE=3
SV=1
Length = 305
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 103/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+E+SGLLL
Sbjct: 93 YEDDNLIAINKPAGLATQGGSKINLSIDS----ALKYLNYKGADFKLVHRLDKETSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S+V L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKN---------YLSNV----KLHDAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y++L + N IE P+T R HQLR+H
Sbjct: 194 ---SKGSTPKITDIYSENGKL-----AITYYKLLKSLDNNLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PIVGD KYG
Sbjct: 245 AKLLGCPIVGDDKYG 259
>sp|Q92IS6|RLUC_RICCN Ribosomal large subunit pseudouridine synthase C OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) GN=rluC PE=3
SV=1
Length = 303
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 32/195 (16%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP--KLVHRLDRESSGLLL 264
Y D ++ +NKP + +G ++ S+D+ AL Y +G KLVHRLD+++SGLLL
Sbjct: 93 YADDNLIAINKPAGLATQGGTKINLSIDS----ALKYLNYKGADFKLVHRLDKKTSGLLL 148
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + S S L A+ + + + + Y+A+ G P + G + + + K
Sbjct: 149 IAKNYLS-------------SVKLHNAFKE--KLVVKTYFAVTYGKPIKNVGEVRSNIEK 193
Query: 325 VLLDDGKTERI--ILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
G T +I I ++N L A+T Y+VL + N IE P+T R HQLR+H
Sbjct: 194 ---SKGSTPKITDIDSENGKL-----AITYYKVLKSLDNNLFLIEFTPVTGRMHQLRLH- 244
Query: 383 AEALGTPIVGDYKYG 397
A+ LG PI+GD KYG
Sbjct: 245 AKLLGCPILGDDKYG 259
>sp|Q6DBR0|RUSD4_DANRE RNA pseudouridylate synthase domain-containing protein 4 OS=Danio
rerio GN=rpusd4 PE=2 SV=1
Length = 358
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 115/268 (42%), Gaps = 63/268 (23%)
Query: 207 YRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGP----KLVHRLDRESSGL 262
Y D I+ +NKP VPL + NS+ N P L H+L++E++G+
Sbjct: 93 YEDQNIIAINKPYDVPLHNINGIRNSIAECLPLLAKITDNMRPGSQLHLCHKLEKETTGV 152
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH--- 319
L++ +T+E+ + L + +Y A+ +G P +G+I
Sbjct: 153 LILAKTEEAAEHVQTLIQS---------------HKVEMKYLAITVGVPVPSEGVIDIPV 197
Query: 320 ----------------APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGC 363
+PL KV D R+ + A+T Y+VL +GC
Sbjct: 198 IERAVVGPQPHFKMALSPLFKVNEDGDGVTRV-----RAHRQAHAAVTRYQVLD-NTSGC 251
Query: 364 SWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLR 423
S +EL+PLT K+QLRVH A AL PI+GD+KY W ++ P KL
Sbjct: 252 SLVELQPLTGVKNQLRVHMALALTCPILGDHKYS-----HWSKL----------APQKL- 295
Query: 424 RPDGLDVQKGSVLSKVPL--LHLHCREL 449
P+G + G V SK LHLH R +
Sbjct: 296 -PEGTLRRLGLVQSKTRYLPLHLHSRRI 322
>sp|Q96CM3|RUSD4_HUMAN RNA pseudouridylate synthase domain-containing protein 4 OS=Homo
sapiens GN=RPUSD4 PE=2 SV=1
Length = 377
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 136/296 (45%), Gaps = 65/296 (21%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLD 256
L R + ++D ++V+NKP +P+ G L + + + LA L E L HRLD
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKM-LHGHKAEPLHLCHRLD 153
Query: 257 RESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQG 316
+E++G++++ K+ + LF + ++YWA+ + P G
Sbjct: 154 KETTGVMVLAWDKDMAHQVQELFRT---------------RQVVKKYWAITVHVPMPSAG 198
Query: 317 IIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM 359
++ P+ + +DDGK ++ ++N+ Q A+T+Y+VL
Sbjct: 199 VVDIPIVEKEAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNA-----QVAVTQYQVLSST 253
Query: 360 INGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKP 419
++ + +EL+P+T KHQLRVH + L PI+GD+KY W ++ + + G
Sbjct: 254 LSS-ALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS-----DWNRLAPQKL--SVGTL 305
Query: 420 YKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPDGPDLLRFVASMP 475
KL GL+ K + LHLH R+L + P L S G + L V +P
Sbjct: 306 KKL----GLEQSKARYIP----LHLHARQL----ILPALGS---GKEELNLVCKLP 346
>sp|Q9HZM9|RLUC_PSEAE Ribosomal large subunit pseudouridine synthase C OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rluC PE=3 SV=1
Length = 318
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D A++V+NKP + + G V + + L D + +LVHRLDR++SGLL+
Sbjct: 97 IVYEDKALIVVNKPAGIAVHGGSGVSAGVIEVFRQ-LRPDAKD-IELVHRLDRDTSGLLM 154
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + + S+L L + K + K RY ALV G + + APL K
Sbjct: 155 IAKKR---SMLRHLHEALRGEKIVDK-----------RYHALVRGHWPAGKKNVRAPLLK 200
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
L G ER++ G ++A+TE+RVL + + +E RP+T R HQ+RVH
Sbjct: 201 NNLRSG--ERMVEVNVEG----KDALTEFRVLRRFGDFATLVEARPITGRTHQIRVHAKH 254
Query: 385 ALGTPIVGDYKYG 397
A G I GD KYG
Sbjct: 255 A-GHAIAGDPKYG 266
>sp|Q4QQT0|RUSD4_RAT RNA pseudouridylate synthase domain-containing protein 4 OS=Rattus
norvegicus GN=Rpusd4 PE=2 SV=1
Length = 377
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 140/294 (47%), Gaps = 63/294 (21%)
Query: 191 LNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYN 246
++PN + RR++ ++D ++V+NKP +P+ G L + + + LA L
Sbjct: 86 VHPNVLAKELSRRIL-HQDKDLVVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKA 143
Query: 247 EGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWAL 306
E L HRLD+E++G++++ K+ + LF +++ + K +YWA+
Sbjct: 144 EPLHLCHRLDKETTGVMVLAWEKDMAHQVQELF----RTRQVEK-----------KYWAI 188
Query: 307 VIGSPKEKQGIIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEA 349
+ P G++ P+ + +D+GK ++ ++++ + A
Sbjct: 189 TVRVPLPSAGVVDIPIMEKEVAGQQQHHKMTLRPSYRMDNGKMVKVRASRDAHV-----A 243
Query: 350 MTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPR 409
+T+Y+VL + + +EL+P+T KHQLRVH A L PI+GD+KY W ++
Sbjct: 244 VTQYQVLSSTPSS-ALVELQPVTGIKHQLRVHLAFGLDCPILGDHKYS-----DWNRLAP 297
Query: 410 VDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELKSDNLFPTLSSKPD 463
+ ++G KL GL K + LHLH R+L + P L S+ +
Sbjct: 298 QKL--SAGTLKKL----GLQQSKARYIP----LHLHARQL----ILPALGSRTE 337
>sp|Q87N15|RLUC_VIBPA Ribosomal large subunit pseudouridine synthase C OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rluC PE=3 SV=1
Length = 315
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 38/256 (14%)
Query: 144 FVEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLR 202
V +G+++ +K IK ++ G + +P VE K D PS LN A+ L
Sbjct: 41 IVRKGEVRVNKKRIKAEYKLKAGDLVRIPPVTVE---KKEEDVAPSTKLNKVAE----LE 93
Query: 203 RLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
++ Y D +L+LNKP + G + +++AL A + E LVHR+DR++SG
Sbjct: 94 HMIIYEDDHMLILNKPSGTAVHGGSGLKFGAIEALRALRPQARFLE---LVHRIDRDTSG 150
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
+LL+ + + ++ L F + K++ K Y+ALV+G K +++AP
Sbjct: 151 ILLVAKKRSALRHLQAQF----REKTVKKF-----------YFALVMGQWKSSCKVVNAP 195
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L K + I+ +G + + T +++L + I+ P+T R HQ+RVH
Sbjct: 196 LLK-----NEVNSIVRVNPNG----KPSETRFKIL-EKFEQATLIQASPITGRTHQIRVH 245
Query: 382 CAEALGTPIVGDYKYG 397
+ G PI D +YG
Sbjct: 246 T-QYTGHPIAWDDRYG 260
>sp|Q5E9Z1|RUSD4_BOVIN RNA pseudouridylate synthase domain-containing protein 4 OS=Bos
taurus GN=RPUSD4 PE=2 SV=1
Length = 377
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 53/222 (23%)
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPK-----L 251
L R + ++D ++V+NKP +P+ G L + + + LA GPK L
Sbjct: 95 LSRGIVHQDKELVVINKPYGLPVHGGPGVKLCISDVLPVLA------KILHGPKAKPLHL 148
Query: 252 VHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSP 311
HRLD+E++G++++ KE + LF +++ ++K +YWA+ + P
Sbjct: 149 CHRLDKETTGVMVLAWEKEVAHQVQELF----RTRQVTK-----------KYWAITVRVP 193
Query: 312 KEKQGIIHAPLSK-----------------VLLDDGKTERIILAQNSGLEASQEAMTEYR 354
+ G++ P+ + +DDGK R+ ++N+ L A+T+Y+
Sbjct: 194 VPEAGVVDIPIVEKEAQGQQHHHKMTLSPSYRMDDGKMVRVRSSRNAQL-----AVTQYQ 248
Query: 355 VLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKY 396
VL ++ + +EL+P+T KHQLRVH + L PI+GD+KY
Sbjct: 249 VLSSSLSA-ALLELQPITGIKHQLRVHMSFGLDCPILGDHKY 289
>sp|Q8Z7J7|RLUC_SALTI Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhi GN=rluC PE=3 SV=1
Length = 319
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++IK +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRIKPEYKLESGDEVRIPPV----RVAEREEE----AVSPHLQKVAALADVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + + + M + Y ALV G + + APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRE--KGMQKDYLALVRGQWQSHVKTVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVSQEGKPSETRFKVEERYAFATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>sp|Q8ZQ16|RLUC_SALTY Ribosomal large subunit pseudouridine synthase C OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluC PE=3 SV=1
Length = 319
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++IK +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRIKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALADVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + + + M + Y ALV G + + APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRE--KGMQKDYLALVRGQWQSHVKTVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVSQEGKPSETRFKVEERYAFATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>sp|P0AA40|RLUC_SHIFL Ribosomal large subunit pseudouridine synthase C OS=Shigella
flexneri GN=rluC PE=3 SV=1
Length = 319
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++IK +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRIKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALADVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + + + M + Y ALV G + + APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRE--KGMQKDYLALVRGQWQSHVKSVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVSQEGKPSETRFKVEERYAFATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>sp|P0AA39|RLUC_ECOLI Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli (strain K12) GN=rluC PE=1 SV=1
Length = 319
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++IK +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRIKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALADVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + + + M + Y ALV G + + APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRE--KGMQKDYLALVRGQWQSHVKSVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVSQEGKPSETRFKVEERYAFATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>sp|Q8X8J3|RLUC_ECO57 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O157:H7 GN=rluC PE=3 SV=1
Length = 319
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++IK +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRIKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALADVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + + + M + Y ALV G + + APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRE--KGMQKDYLALVRGQWQSHVKSVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVSQEGKPSETRFKVEERYAFATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>sp|P74346|Y1629_SYNY3 Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr1629 PE=3 SV=1
Length = 327
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 29/198 (14%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSYDYNEG---PKLVHRLDRE 258
+ Y D ++++NKP + P GH P ++AL A G P +VHRLD++
Sbjct: 100 ILYEDEQLIIINKPAGLVVHPGPGH-PDGTVVNALLAHCPDLAGIGGVQRPGIVHRLDKD 158
Query: 259 SSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGII 318
++G +++ +T+ ++ L K K+ + YW +V GSPKE QG +
Sbjct: 159 TTGAMVVAKTELALHNLQVQL----KEKTARRL-----------YWGIVYGSPKEIQGTV 203
Query: 319 HAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQL 378
+ P+ + D K I+ + G +EA+T +R+L I SW+E + T R HQ+
Sbjct: 204 NLPVGRHPGDRQKMG-IVPVEKGG----REAVTHWRLL-ERIGNHSWLEFQLETGRTHQI 257
Query: 379 RVHCAEALGTPIVGDYKY 396
RVH ++ +G P+VGD Y
Sbjct: 258 RVH-SKQMGHPLVGDNLY 274
>sp|Q45826|Y901_CHLAA Uncharacterized RNA pseudouridine synthase Caur_0901
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=Caur_0901 PE=3 SV=2
Length = 316
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 97/198 (48%), Gaps = 32/198 (16%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAA--AALSYDYNEGPKLVHRLDRES 259
V Y D+ I V+NKP + P GH P ++AL A L+ P +VHRLDR++
Sbjct: 93 VVYEDADIAVINKPAGMVVHPAPGH-PRGTLVNALLARYPDLAIGGELRPGIVHRLDRDT 151
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SGLL++ R +++ L D +++ + K Y ALVIG P E G I
Sbjct: 152 SGLLVIARHDQAMRSLV----DQQQARRMRKI-----------YQALVIGRPPET-GTID 195
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
AP+ + D R+ + + + A T YR+L S +E++ T R HQ+R
Sbjct: 196 APIGR---DPRDRLRMAVVPD-----GRPARTHYRLLD-TFGDYSLLEVQLETGRTHQIR 246
Query: 380 VHCAEALGTPIVGDYKYG 397
VH LG PIVGD YG
Sbjct: 247 VHLRH-LGYPIVGDPVYG 263
>sp|Q8FIP7|RLUC_ECOL6 Ribosomal large subunit pseudouridine synthase C OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluC
PE=3 SV=1
Length = 319
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 53/254 (20%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
++IK +E G + +P R+++R + ++P+ ++ L ++ Y D IL
Sbjct: 52 KRIKPEYKLEAGDEVRIPPV----RVAEREEE----AVSPHLQKVAALADVILYEDDHIL 103
Query: 214 VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----------LVHRLDRESSGLL 263
VLNKP + G + LS+ EG + LVHRLDR++SG+L
Sbjct: 104 VLNKPSGTAVHG------------GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151
Query: 264 LMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLS 323
L+ + + ++ +SL + + + M + Y ALV G + + APL
Sbjct: 152 LVAKKRSAL-------------RSLHEQLRE--KGMQKDYLALVRGQWQSYVKSVQAPLL 196
Query: 324 KVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCA 383
K +L G ERI+ G + E R + CS P+T R HQ+RVH
Sbjct: 197 KNILQSG--ERIVRVSQEGKPSETRFKVEERYAFATLVRCS-----PVTGRTHQIRVHTQ 249
Query: 384 EALGTPIVGDYKYG 397
A G PI D +YG
Sbjct: 250 YA-GHPIAFDDRYG 262
>sp|Q9KQH0|RLUC_VIBCH Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rluC PE=3 SV=1
Length = 315
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 118/245 (48%), Gaps = 36/245 (14%)
Query: 154 RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 213
+++K +E G + +P VE + + PS L+ A+ L + Y D +L
Sbjct: 52 KRVKAEYKLEAGDVVRVPPVTVE--VKENEPAPPSTKLSKVAE----LEHCIVYEDDHLL 105
Query: 214 VLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESV 272
+LNKP + G +H +++AL A + E LVHR+DR++SG+LL+ + + ++
Sbjct: 106 ILNKPSGTAVHGGSGLHFGAIEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSAL 162
Query: 273 SLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKT 332
L F + K++ K Y+ALV+G + +++APL K +
Sbjct: 163 RHLQAQF----REKTVQKY-----------YYALVMGHWDAECKVVNAPLLK-----NEV 202
Query: 333 ERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVG 392
I+ +G + + T +R+L + ++ P+T R HQ+RVH + +G PI
Sbjct: 203 NSIVRVNPNG----KPSETRFRILEKFAE-ATLVQASPVTGRTHQIRVHT-QYMGHPIAW 256
Query: 393 DYKYG 397
D +YG
Sbjct: 257 DDRYG 261
>sp|P44433|RLUC_HAEIN Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluC PE=3 SV=1
Length = 322
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 121/258 (46%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++T +V+ PV R++++ D S LN ++
Sbjct: 50 GEVRVNKGRIKPEYKLQTGDVVR-----IPPV-----RVAEKNDAPISKNLN----KVAA 95
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + + D +++LNKP + + G ++ ++AL A + E LVHRLDR++
Sbjct: 96 LENQILFEDDCLIILNKPSGIAVHGGSGLNFGVIEALRALRPEARFLE---LVHRLDRDT 152
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG+LL+ + + ++ L + + + Y ALV G + +I
Sbjct: 153 SGILLIAKKRSALRNLHEQLR---------------VKTVQKDYLALVRGQWQSHIKVIQ 197
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
A L K L G ERI+ G + + T + + IN + ++ P+T R HQ+R
Sbjct: 198 ASLLKNELSSG--ERIVRVSEQG----KPSETRFSIEERYIN-ATLVKASPVTGRTHQIR 250
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G PI D KYG
Sbjct: 251 VHTQYA-GHPIALDDKYG 267
>sp|P59835|RLUC_HAEDU Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluC PE=3 SV=1
Length = 320
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 119/258 (46%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ N+++ +P+ R++ + + S LN A+
Sbjct: 48 GEVRVNKGRVKPDYKLQHNDIVR------IPLV----RVTPKNEAPISTKLNKVAE---- 93
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + + Y D +LVLNKP + + G + ++AL A + E LVHR+DR++
Sbjct: 94 LEQHILYEDDVMLVLNKPSGIGVHGGSGLSFGVIEALRALRPQARFLE---LVHRIDRDT 150
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG+LL+ + + ++ L + + + + Y ALV G + +I
Sbjct: 151 SGILLVAKKRSALRALHEQLRE---------------KVVQKDYLALVRGQWQAHINVIK 195
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ERI+ G + E R + I+ P+T R HQ+R
Sbjct: 196 APLLKNELQSG--ERIVKVSEQGKPSETRFSIEERY-----PNATLIKASPITGRTHQIR 248
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G PI D +YG
Sbjct: 249 VHTQYA-GHPIACDDRYG 265
>sp|P50513|RLUD_ZYMMO Ribosomal large subunit pseudouridine synthase D OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=rluD PE=3 SV=2
Length = 317
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 38/203 (18%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEG----------PKLVHR 254
+ + D +LV+NKP + + P + D AL Y + G P +VHR
Sbjct: 84 IVFEDEHLLVVNKPAGMVVH---PAAGNYDNTLVNALLY-HCAGKLSGIGGVARPGIVHR 139
Query: 255 LDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEK 314
+D+++SGLL++ +T + + L F+D ++ +RY A+V G P
Sbjct: 140 IDKDTSGLLVVAKTDPAHAGLAAQFAD---------------HSINRRYRAIVDGHP-SL 183
Query: 315 QGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCR 374
QG + APL++ ++ K I++ G + A+T YR++ P+ N S IE R T R
Sbjct: 184 QGHVDAPLARSSVNRQKMA--IVSDGRG----KRAVTHYRMITPLKN-ASLIECRLETGR 236
Query: 375 KHQLRVHCAEALGTPIVGDYKYG 397
HQ+RVH + ++G ++GD YG
Sbjct: 237 THQVRVHMS-SIGHSLLGDPVYG 258
>sp|Q9CWX4|RUSD4_MOUSE RNA pseudouridylate synthase domain-containing protein 4 OS=Mus
musculus GN=Rpusd4 PE=2 SV=1
Length = 377
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 158/332 (47%), Gaps = 66/332 (19%)
Query: 155 KIKTNEVMEPGARIFLPVSMVEGRISK--RYDTIPSGTLNPNADEIDYLRRLVKYRDSAI 212
K++ + + + +P + V+ R+ + R+ T ++PN + RR++ ++D+ +
Sbjct: 49 KLRAQKQEQKAKEVRVPTNPVQRRVQELVRF-TQQLQRVHPNVLAKELSRRIL-HQDNDL 106
Query: 213 LVLNKPPKVPLKG----HLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRT 268
+V+NKP +P+ G L + + + LA L E L HRLD+E++G++++
Sbjct: 107 VVINKPYGLPVHGGPGVQLCISDVLPILAKM-LHGHKAEPLHLCHRLDKETTGVMVLAWE 165
Query: 269 KESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK---- 324
K+ + LF +++ + K +YWA+ + P G++ P+ +
Sbjct: 166 KDMAHQVQELF----RTRQVEK-----------KYWAITVRVPLPSAGVVDIPIKEKEVQ 210
Query: 325 -------------VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPL 371
LD+GK ++ ++++ + A+T+Y+VL + + +EL+P+
Sbjct: 211 GPQQHHKMTLSPSYRLDNGKMVKVRASRDAHV-----AVTQYQVLS-SASSSALVELQPV 264
Query: 372 TCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQ 431
T KHQLRVH + L PI+GD+KY W ++ + ++G KL GL
Sbjct: 265 TGIKHQLRVHLSFGLDCPILGDHKYS-----DWTRLAPQKL--SAGTLKKL----GLQQS 313
Query: 432 KGSVLSKVPLLHLHCRELKSDNLFPTLSSKPD 463
K + LHLH R+L + P L S+ +
Sbjct: 314 KARYIP----LHLHARQL----ILPALGSRTE 337
>sp|Q8D8G1|RLUC_VIBVU Ribosomal large subunit pseudouridine synthase C OS=Vibrio
vulnificus (strain CMCP6) GN=rluC PE=3 SV=1
Length = 315
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 124/256 (48%), Gaps = 38/256 (14%)
Query: 144 FVEQGQMKPIRK-IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLR 202
V +G+++ +K +K + G + +P +E K +T PS LN A+ L+
Sbjct: 41 IVRKGEVRVNKKRVKAEYKLAAGDVVRIPPVTLE---KKDPETAPSTKLNKVAE----LQ 93
Query: 203 RLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRESSG 261
L+ Y D +LVLNKP + G + +++AL A + E LVHR+DR++SG
Sbjct: 94 DLIIYEDDHLLVLNKPSGTAVHGGSGLKFGAIEALRALRPEARFLE---LVHRIDRDTSG 150
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
+LL+ + + ++ L F + K++ K Y+ALV+G K +++AP
Sbjct: 151 ILLVAKKRSALRHLQAQF----REKTVQKY-----------YFALVMGEWKNSCKVVNAP 195
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L K + I+ +G + + T ++V+ + ++ P+T R HQ+RVH
Sbjct: 196 LLK-----NEVNSIVRVNPNG----KPSETRFKVIEKFPQ-ATLVQASPITGRTHQIRVH 245
Query: 382 CAEALGTPIVGDYKYG 397
+ G PI D +YG
Sbjct: 246 TQYS-GHPIAWDDRYG 260
>sp|Q9CM51|RLUC_PASMU Ribosomal large subunit pseudouridine synthase C OS=Pasteurella
multocida (strain Pm70) GN=rluC PE=3 SV=1
Length = 326
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 120/258 (46%), Gaps = 41/258 (15%)
Query: 141 GDSFVEQGQMKPIRKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDY 200
G+ V +G++KP K++ N+++ PV R+S++ S LN ++
Sbjct: 51 GEVRVNKGRIKPEYKLQANDIVR-----VPPV-----RVSEKEHAPISTKLN----KVSQ 96
Query: 201 LRRLVKYRDSAILVLNKPPKVPLKGHLPVH-NSMDALAAAALSYDYNEGPKLVHRLDRES 259
L + + + D +LVLNKP + + G + ++AL + E LVHRLDR++
Sbjct: 97 LEKQILFEDECLLVLNKPSGIAVHGGSGLSFGVIEALRTLRPDARFLE---LVHRLDRDT 153
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG+LL+ + + ++ +SL + + + + + Y ALV G + ++
Sbjct: 154 SGILLVAKKRSAL-------------RSLHEQLRE--KTVQKDYLALVRGQWQSHCKVVK 198
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLR 379
APL K L G ERI+ G + E R + ++ P+T R HQ+R
Sbjct: 199 APLLKNELSSG--ERIVRVSEQGKPSETRFSIEERY-----EYATLVKASPVTGRTHQIR 251
Query: 380 VHCAEALGTPIVGDYKYG 397
VH A G PI D KYG
Sbjct: 252 VHTQYA-GHPIALDDKYG 268
>sp|Q8ZFU1|RLUC_YERPE Ribosomal large subunit pseudouridine synthase C OS=Yersinia pestis
GN=rluC PE=3 SV=1
Length = 320
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 45/213 (21%)
Query: 196 DEIDYLRRLVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPK----- 250
D++ L + + D +LVLNKP + G + LS+ EG +
Sbjct: 86 DKVAALADCILFEDDYLLVLNKPSGTAVHG------------GSGLSFGVIEGLRALRPE 133
Query: 251 -----LVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWA 305
LVHRLDR++SG+LL+ + + ++ +SL + ++M + Y A
Sbjct: 134 ARFLELVHRLDRDTSGVLLVAKKRSAL-------------RSLHEQLR--LKSMQKDYLA 178
Query: 306 LVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSW 365
LV G + I APL K ++ G ER++ + G + E R +
Sbjct: 179 LVRGQWQSHCKAIQAPLLKNIMQSG--ERVVKVSSEGKPSETRFKIEER-----FEHATL 231
Query: 366 IELRPLTCRKHQLRVHCAEALGTPIVGDYKYGW 398
++ P+T R HQ+RVH A G PI D +YG+
Sbjct: 232 VKASPVTGRTHQIRVHALHA-GHPIAFDDRYGY 263
>sp|P70870|RLUD_BORBU Ribosomal large subunit pseudouridine synthase D OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=rluD PE=3 SV=2
Length = 326
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 35/202 (17%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALA------AAALSYDYNEG---PKLVHRL 255
+ Y DS ++VLNKP + H + + D + +L ++NE P +VHRL
Sbjct: 86 IIYEDSNVIVLNKPQGIL--SHPGISHWDDTVVNFLLYHIKSLKINFNEEKIRPGIVHRL 143
Query: 256 DRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQ 315
D+++SG+L+ + ++ L F D +K Y A+V G+
Sbjct: 144 DKDTSGVLICAKNISTLRFLAQQFKDKRTNKV---------------YIAIVKGNFNSFF 188
Query: 316 GIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRK 375
G I + + + D ++ ++++ G ++A+TEYR+L S + L+P T R
Sbjct: 189 GSIESFIDR---DKHNRKKFSVSKDRG----KKALTEYRLLLNF-GEYSLLALKPKTGRT 240
Query: 376 HQLRVHCAEALGTPIVGDYKYG 397
HQLRVH + L PI+GD YG
Sbjct: 241 HQLRVHM-KYLNFPILGDEVYG 261
>sp|Q8ZIK1|RLUA_YERPE Ribosomal large subunit pseudouridine synthase A OS=Yersinia pestis
GN=rluA PE=3 SV=1
Length = 206
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 33/206 (16%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL--VHRLDRESSG 261
+V Y+D I+V+NKP G L V + ++ N+ P VHRLD +SG
Sbjct: 2 IVLYQDKHIMVVNKP-----SGLLSVPGRAPENKDSVMTRVQNDFPTAESVHRLDMATSG 56
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
++++ TK + L F + K+ Y A V G + +G+I P
Sbjct: 57 VIVVALTKAAERELKRQFREREPKKT---------------YIARVWGHLAQDEGLIDLP 101
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L + K Q E + A TEY+V+ +G + ++L P+T R HQLRVH
Sbjct: 102 LICDWPNRPK-------QKVCYETGKSAQTEYQVISRDDDGSTRVKLSPITGRSHQLRVH 154
Query: 382 CAEALGTPIVGDYKYGWFVHRRWKQM 407
A+G PI+GD G++ H K M
Sbjct: 155 ML-AMGHPILGD---GFYAHPEAKAM 176
>sp|Q8Z9J5|RLUA_SALTI Ribosomal large subunit pseudouridine synthase A OS=Salmonella
typhi GN=rluA PE=3 SV=3
Length = 219
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 30/196 (15%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL--VHRLDRESSG 261
++ Y+D I+V+NKP G L V ++A + ++ + P+ VHRLD +SG
Sbjct: 15 VILYQDEHIMVVNKP-----SGLLSVPGRLEAHKDSIMTRIQRDYPQAESVHRLDMATSG 69
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
++++ TK + L F + K +Y A V G P +G++ P
Sbjct: 70 VIVVALTKAAERELKRQFREREPKK---------------QYVARVWGHPSPAEGLVDLP 114
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L + K Q E + A TEY V+ + + + L+P+T R HQLRVH
Sbjct: 115 LICDWPNRPK-------QKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGRSHQLRVH 167
Query: 382 CAEALGTPIVGDYKYG 397
ALG PI+GD Y
Sbjct: 168 ML-ALGHPILGDQFYA 182
>sp|Q8ZRV9|RLUA_SALTY Ribosomal large subunit pseudouridine synthase A OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluA PE=3 SV=3
Length = 219
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 30/196 (15%)
Query: 204 LVKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKL--VHRLDRESSG 261
++ Y+D I+V+NKP G L V ++A + ++ + P+ VHRLD +SG
Sbjct: 15 VILYQDEHIMVVNKP-----SGLLSVPGRLEAHKDSIMTRIQRDYPQAESVHRLDMATSG 69
Query: 262 LLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
++++ TK + L F + K +Y A V G P +G++ P
Sbjct: 70 VIVVALTKAAERELKRQFREREPKK---------------QYVARVWGHPSPAEGLVDLP 114
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L + K Q E + A TEY V+ + + + L+P+T R HQLRVH
Sbjct: 115 LICDWPNRPK-------QKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGRSHQLRVH 167
Query: 382 CAEALGTPIVGDYKYG 397
ALG PI+GD Y
Sbjct: 168 ML-ALGHPILGDRFYA 182
>sp|Q8FL93|RLUA_ECOL6 Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluA
PE=3 SV=3
Length = 219
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 28/195 (14%)
Query: 204 LVKYRDSAILVLNKPPKV-PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
+V Y+D I+V+NKP + + G L H + DY + + VHRLD +SG+
Sbjct: 15 VVLYQDDHIMVVNKPSGLLSVPGRLEEHKDS---VMTRIQRDYPQA-ESVHRLDMATSGV 70
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
+++ TK + L F + K +Y A V G P +G++ PL
Sbjct: 71 IVVALTKAAERELKRQFREREPKK---------------QYVARVWGHPSPAEGLVDLPL 115
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
+ K Q E + A TEY V+ + + + L+P+T R HQLRVH
Sbjct: 116 ICDWPNRPK-------QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM 168
Query: 383 AEALGTPIVGDYKYG 397
ALG PI+GD Y
Sbjct: 169 L-ALGHPILGDRFYA 182
>sp|Q8XA10|RLUA_ECO57 Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli O157:H7 GN=rluA PE=3 SV=3
Length = 219
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 30/196 (15%)
Query: 204 LVKYRDSAILVLNKPPKV-PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
++ Y+D I+V+NKP + + G L H + DY + + VHRLD +SG+
Sbjct: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDS---VMTRIQRDYPQA-ESVHRLDMATSGV 70
Query: 263 LLMGRTKESVSLLTWLFSD-VNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAP 321
+++ TK + L F + V K + +++ W G P +G++ P
Sbjct: 71 IVVALTKAAERELKRQFRERVPKKQYVTRVW----------------GHPSPAEGLVDLP 114
Query: 322 LSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVH 381
L + K Q E + A TEY V+ + + + L+P+T R HQLRVH
Sbjct: 115 LICDWPNRPK-------QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVH 167
Query: 382 CAEALGTPIVGDYKYG 397
ALG PI+GD Y
Sbjct: 168 ML-ALGHPILGDRFYA 182
>sp|P0AA38|RLUA_SHIFL Ribosomal large subunit pseudouridine synthase A OS=Shigella
flexneri GN=rluA PE=3 SV=2
Length = 219
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 28/195 (14%)
Query: 204 LVKYRDSAILVLNKPPKV-PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
++ Y+D I+V+NKP + + G L H + DY + + VHRLD +SG+
Sbjct: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDS---VMTRIQRDYPQA-ESVHRLDMATSGV 70
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
+++ TK + L F + K +Y A V G P +G++ PL
Sbjct: 71 IVVALTKAAERELKRQFREREPKK---------------QYVARVWGHPSPAEGLVDLPL 115
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
+ K Q E + A TEY V+ + + + L+P+T R HQLRVH
Sbjct: 116 ICDWPNRPK-------QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM 168
Query: 383 AEALGTPIVGDYKYG 397
ALG PI+GD Y
Sbjct: 169 L-ALGHPILGDRFYA 182
>sp|P0AA37|RLUA_ECOLI Ribosomal large subunit pseudouridine synthase A OS=Escherichia
coli (strain K12) GN=rluA PE=1 SV=2
Length = 219
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 28/195 (14%)
Query: 204 LVKYRDSAILVLNKPPKV-PLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGL 262
++ Y+D I+V+NKP + + G L H + DY + + VHRLD +SG+
Sbjct: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDS---VMTRIQRDYPQA-ESVHRLDMATSGV 70
Query: 263 LLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPL 322
+++ TK + L F + K +Y A V G P +G++ PL
Sbjct: 71 IVVALTKAAERELKRQFREREPKK---------------QYVARVWGHPSPAEGLVDLPL 115
Query: 323 SKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHC 382
+ K Q E + A TEY V+ + + + L+P+T R HQLRVH
Sbjct: 116 ICDWPNRPK-------QKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHM 168
Query: 383 AEALGTPIVGDYKYG 397
ALG PI+GD Y
Sbjct: 169 L-ALGHPILGDRFYA 182
>sp|Q8VCZ8|RUSD1_MOUSE RNA pseudouridylate synthase domain-containing protein 1 OS=Mus
musculus GN=Rpusd1 PE=2 SV=1
Length = 306
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 20/157 (12%)
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
D G + H+LD +SG L + K + F K + ++KA Y
Sbjct: 55 DTCYGFRFCHQLDFSTSGALCVALNKAAAGSAYKCF----KERRVTKA-----------Y 99
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI--- 360
ALV G +E Q I+ + + + G+T + + G E + ++TE VL +
Sbjct: 100 LALVRGHVQESQVTINYAIGRNSTE-GRTHTMCIEGTHGCENPKPSLTELLVLEHGLYAG 158
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ S + L+PLT R HQLRVHC+ ALG PIVGD YG
Sbjct: 159 DPVSKVLLKPLTGRTHQLRVHCS-ALGHPIVGDLTYG 194
>sp|Q17QT4|RUSD1_BOVIN RNA pseudouridylate synthase domain-containing protein 1 OS=Bos
taurus GN=RPUSD1 PE=2 SV=1
Length = 308
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 20/157 (12%)
Query: 244 DYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRY 303
D G + H+LD +SG L + K + F D +K+ Y
Sbjct: 55 DTYYGFRFCHQLDFSTSGALCVALNKAAAGSAYRCFKDRRVTKA---------------Y 99
Query: 304 WALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMI--- 360
ALV G +E + I + K +G+T + + G E + ++TE VL +
Sbjct: 100 LALVRGHVQESRMTISYAIGKNS-TEGRTHTMCIEGTQGCENPKPSLTELVVLEHGLYAG 158
Query: 361 NGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ S + L+PLT R HQLRVHC+ ALG PIVGD YG
Sbjct: 159 DPVSKVLLQPLTGRTHQLRVHCS-ALGHPIVGDLTYG 194
>sp|Q45480|YLYB_BACSU Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus
subtilis (strain 168) GN=ylyB PE=3 SV=3
Length = 303
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 34/200 (17%)
Query: 205 VKYRDSAILVLNKPPKV---PLKGHLPVHNSMDALAAAALSYDYNEG---PKLVHRLDRE 258
+ Y D +LV+NKP + P GHL ++ L A G P +VHR+D++
Sbjct: 82 IYYEDQDVLVVNKPRGMVVHPAPGHL-TGTLVNGLMAHCTDLSGINGVMRPGIVHRIDKD 140
Query: 259 SSGLLLMGRTKES-VSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGI 317
+SGLL++ + + SL+ L VNK+ + ++Y A+V G G
Sbjct: 141 TSGLLMVAKNDMAHESLVNQL---VNKT-------------VTRKYTAVVHGLISHDDGT 184
Query: 318 IHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQ 377
I AP+ + D K + + G + A+T + VL + +E + T R HQ
Sbjct: 185 IDAPIGR----DKKDRQSMTVTRDG----KNAVTHFHVL-ERFQDFTLVECQLETGRTHQ 235
Query: 378 LRVHCAEALGTPIVGDYKYG 397
+RVH + +G P+ GD KYG
Sbjct: 236 IRVHM-KYIGFPLAGDPKYG 254
>sp|P59840|TRUC_HAEDU tRNA pseudouridine synthase C OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=truC PE=3 SV=1
Length = 243
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 91/208 (43%), Gaps = 45/208 (21%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNS-MDA----LAAAALSYDYNEGPKLVHRLDRES 259
+ YRD ++ +NKP + VH S +D A L N+ +HRLDR +
Sbjct: 5 ILYRDDELIAINKPAG------MLVHRSWLDKAETLFAMQTLRDQINQHVFPIHRLDRPT 58
Query: 260 SGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIH 319
SG+LL E L++ F K Y A+V G EK G I
Sbjct: 59 SGVLLFALNSEMARLMSEQFEQHKVEKE---------------YLAIVRGYIAEK-GEID 102
Query: 320 APLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLG----PMING------CSWIELR 369
PL KV+LD I + S +A+Q+A+T Y+ L P G S + L
Sbjct: 103 YPL-KVILDK------IADKFSQPKAAQQAVTFYQNLAKVEMPYSTGKYATTRYSLVALS 155
Query: 370 PLTCRKHQLRVHCAEALGTPIVGDYKYG 397
P T RKHQLR H L PI+GD KYG
Sbjct: 156 PKTGRKHQLRRHMKH-LFHPIMGDTKYG 182
>sp|P54604|YHCT_BACSU Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus
subtilis (strain 168) GN=yhcT PE=3 SV=2
Length = 302
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 112/248 (45%), Gaps = 49/248 (19%)
Query: 156 IKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVL 215
+ N +++ G R+F+ + E + ++ P E+D L + D+ +L++
Sbjct: 52 VLNNMIVKKGDRVFIDLQESE-----------ASSVIPEYGELDIL-----FEDNHMLII 95
Query: 216 NKPPKVPLKGHLPVHNSMDALAAAALSYDYN---EGPKL--VHRLDRESSGLLLMGRTKE 270
NKP + P + A ++Y Y E K+ VHRLD+++SG ++ + +
Sbjct: 96 NKPAGIATH---PNEDGQTGTLANLIAYHYQINGETCKVRHVHRLDQDTSGAIVFAKHRL 152
Query: 271 SVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDG 330
+ ++L + L K + + + Y A+ G + K+G I++P+ +
Sbjct: 153 AHAIL---------DQQLEK------KTLKRTYTAIAEGKLRTKKGTINSPIGR------ 191
Query: 331 KTERIILAQNSGLEASQEAMTEYRVLGPMING-CSWIELRPLTCRKHQLRVHCAEALGTP 389
+R + Q A+T ++V+ S +EL T R HQ+RVH A +LG P
Sbjct: 192 --DRSHPTRRRVSPGGQTAVTHFKVMASNAKERLSLVELELETGRTHQIRVHLA-SLGHP 248
Query: 390 IVGDYKYG 397
+ GD YG
Sbjct: 249 LTGDSLYG 256
>sp|Q0DST9|PUS5_ORYSJ RNA pseudourine synthase 5 OS=Oryza sativa subsp. japonica
GN=Os03g0288500 PE=2 SV=2
Length = 397
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 20/207 (9%)
Query: 205 VKYRDSAILVLNKPPKVPL--KGHLPVHNSMDAL---------AAAALSYDYNEGPKLVH 253
V Y D ++ LNKP + + KG + L + + D P VH
Sbjct: 116 VLYEDDDMIALNKPSGLQVLPKGLFQQRTVLAQLQLKDWKMPSSFCSKRKDAQSHPVPVH 175
Query: 254 RLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEA--MYQRYWALVIGSP 311
RL R +SGLLL +TK + + L F++ + S+ D C+A + + Y ALV G
Sbjct: 176 RLGRGTSGLLLCAKTKLAKAQLAAYFAEGATNAGKSRDETDICKARKISKFYRALVTGIL 235
Query: 312 KEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPM-INGCSWIELRP 370
+ + +I P+ V G E + A +SG + AM++ RVL + I+ + I++
Sbjct: 236 ENDEVMITQPIGLVRY-PGVAEGLYAACSSG----KPAMSKVRVLERLKIHNHTLIQVEI 290
Query: 371 LTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ R HQ+R+H A +G P+V D YG
Sbjct: 291 HSGRPHQIRIHLA-YIGHPLVDDPLYG 316
>sp|P75485|Y292_MYCPN Uncharacterized RNA pseudouridine synthase MG209 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_292 PE=3 SV=1
Length = 309
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 24/193 (12%)
Query: 205 VKYRDSAILVLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLL 264
+ Y D I+V+NKP L H N ++L AAL + ++ LVHRLDR++SG+++
Sbjct: 82 ILYEDEQIMVVNKPNG--LISHPTSFNESESLLGAALFHCNHQPVFLVHRLDRDTSGVIM 139
Query: 265 MGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSK 324
+ + N+S L M + Y ALV G I APL +
Sbjct: 140 LAK---------------NQSSLLHLQKQLQQRVMKRYYLALVHFPLDSLSGTISAPLER 184
Query: 325 VLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAE 384
V G + + NS +A + A T++ VL + I+ LT R HQ+RVH +
Sbjct: 185 V----GNNKVMWKVGNSSNKA-KNAFTKFTVLNQN-EKAALIKCELLTGRTHQIRVHL-Q 237
Query: 385 ALGTPIVGDYKYG 397
+ P+ D YG
Sbjct: 238 FIKHPVYNDPLYG 250
>sp|Q5Z8P2|PUS2_ORYSJ RNA pseudourine synthase 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os06g0717400 PE=2 SV=1
Length = 445
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 20/150 (13%)
Query: 249 PKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVI 308
P +VHRLD+ +SGLL++ + + S + L F + + Y +L
Sbjct: 228 PGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFK---------------LHTIRRVYISLTC 272
Query: 309 GSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCS-WIE 367
G+P G I P+++ D R+I SG ++ A + Y+V G S +E
Sbjct: 273 GAPNPNSGRIEVPIAR---DPNNRIRMIATPGSGHRYARHAASRYKVREVFAGGGSALVE 329
Query: 368 LRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
R T R HQ+R H A+ LG P++GD YG
Sbjct: 330 WRLETGRTHQIRAH-AKYLGIPLLGDETYG 358
>sp|P59831|RLUA_HAEDU Ribosomal large subunit pseudouridine synthase A OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluA PE=3 SV=1
Length = 222
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 93/211 (44%), Gaps = 39/211 (18%)
Query: 191 LNPNADEIDYLRRLVKYRDSAILVLNKPPKV-PLKGHLPVHNSMDALAAAALSYDYNEGP 249
LNP +E+ YRD+ I+V+NKP + + G+ P + + Y + E
Sbjct: 10 LNPFLEEV--------YRDNHIVVINKPSGLLSVPGNRPEYYD-SVMTRVQQRYGFAEP- 59
Query: 250 KLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALV-- 307
HRLD +SG++L+ +K + L F D K Y AL+
Sbjct: 60 --AHRLDMATSGIILLALSKVAEKELKRQFRDREPKK---------------HYIALLWG 102
Query: 308 -IGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEASQEAMTEYRVLGPMINGCSWI 366
+G + G I+ PL + D R Q E ++A T Y VL + N + +
Sbjct: 103 KLGDRVGQTGEINFPL---ICDWENRPR----QKICYERGKKATTHYEVLEHLANNTTRV 155
Query: 367 ELRPLTCRKHQLRVHCAEALGTPIVGDYKYG 397
+ P+T R HQLRVH ALG PI+GD Y
Sbjct: 156 KFTPITGRSHQLRVHSL-ALGHPIIGDKFYA 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,285,596
Number of Sequences: 539616
Number of extensions: 8740644
Number of successful extensions: 18506
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 18227
Number of HSP's gapped (non-prelim): 160
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)