BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042465
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
 pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
          Length = 87

 Score = 36.2 bits (82), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 130 GDHRSRTLISEQKRRGKMKEKLYQLRALVPNIT--KMDKASLVGDAVSYVQELQTTAKNL 187
            D R+     E+KRR  +K+  + LR  VP++   K  +A ++  A  Y+Q ++     L
Sbjct: 2   ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTL 61

Query: 188 KAEIADLEASSGSSENWNESIENT 211
           + +I DL+  +   E    ++E +
Sbjct: 62  QQDIDDLKRQNALLEQQVRALEGS 85


>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
           New Insights Into Mechanisms Of Transcriptional Control
 pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
           New Insights Into Mechanisms Of Transcriptional Control
          Length = 80

 Score = 32.7 bits (73), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 140 EQKRRGKMKEKLYQLRALVPNIT--KMDKASLVGDAVSYVQELQTTAKNLKAEIADLE 195
           E+KRR  +K+  + LR  VP++   K  +A ++  A  Y+Q ++      + +I DL+
Sbjct: 20  ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77


>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
           BHLHZ DOMAIN
          Length = 86

 Score = 32.7 bits (73), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 140 EQKRRGKMKEKLYQLRALVPNIT--KMDKASLVGDAVSYVQELQTTAKNLKAEIADLEAS 197
           E+KRR  +K+  + LR  VP++   K  +A ++  A  Y+Q ++      + +I DL+  
Sbjct: 11  ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 70

Query: 198 SGSSENWNESIENTK 212
           +   E    ++E  +
Sbjct: 71  NALLEQQVRALEKAR 85


>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
 pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
          Length = 83

 Score = 32.0 bits (71), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 131 DHRSRTLISEQKRRGKMKEKLYQLRALVPNIT--KMDKASLVGDAVSYVQELQTTAKNLK 188
           D R+     E+KRR  +K+  + LR  VP++   K  +A ++  A  Y+Q ++      +
Sbjct: 1   DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQ 60

Query: 189 AEIADLE 195
            +I DL+
Sbjct: 61  QDIDDLK 67


>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
 pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
          Length = 76

 Score = 31.6 bits (70), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 140 EQKRRGKMKEKLYQLRALVPNIT--KMDKASLVGDAVSYVQELQTTAKNLKAEIADLE 195
           E+KRR  +K+  + LR  VP++   K  +A ++  A  Y+Q ++      + +I DL+
Sbjct: 9   ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 66


>pdb|1NKP|A Chain A, Crystal Structure Of Myc-Max Recognizing Dna
 pdb|1NKP|D Chain D, Crystal Structure Of Myc-Max Recognizing Dna
          Length = 88

 Score = 28.1 bits (61), Expect = 7.1,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 138 ISEQKRRGKMKEKLYQLRALVPNITKMDKAS---LVGDAVSYVQELQTTAKNLKAE 190
           + E++RR ++K   + LR  +P +   +KA    ++  A +Y+  +Q   + L +E
Sbjct: 12  VLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.126    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,462,899
Number of Sequences: 62578
Number of extensions: 303843
Number of successful extensions: 633
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 14
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)