Query 042465
Match_columns 324
No_of_seqs 254 out of 1328
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:53:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 1E-16 3.4E-21 124.9 6.0 67 132-198 6-73 (82)
2 1hlo_A Protein (transcription 99.6 1.3E-15 4.5E-20 117.9 5.3 66 132-197 12-79 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 2.6E-15 8.9E-20 116.9 5.7 66 132-197 2-69 (83)
4 1nkp_A C-MYC, MYC proto-oncoge 99.6 3.4E-15 1.2E-19 117.7 5.7 65 132-196 6-73 (88)
5 1nlw_A MAD protein, MAX dimeri 99.5 1.3E-14 4.6E-19 112.4 7.2 65 133-197 2-69 (80)
6 4ati_A MITF, microphthalmia-as 99.5 9.9E-15 3.4E-19 121.0 5.8 63 131-193 26-92 (118)
7 1an4_A Protein (upstream stimu 99.5 4.7E-15 1.6E-19 110.3 3.2 55 131-185 4-64 (65)
8 4h10_B Circadian locomoter out 99.5 1.1E-14 3.9E-19 110.2 4.0 57 132-188 8-65 (71)
9 1a0a_A BHLH, protein (phosphat 99.5 5.9E-15 2E-19 109.4 1.8 53 132-184 2-61 (63)
10 3u5v_A Protein MAX, transcript 99.4 1E-13 3.4E-18 106.5 3.5 57 132-188 5-65 (76)
11 4h10_A ARYL hydrocarbon recept 99.4 7.5E-14 2.6E-18 106.3 1.4 51 132-182 9-63 (73)
12 1mdy_A Protein (MYOD BHLH doma 99.1 2.3E-11 7.9E-16 91.3 3.0 53 132-184 12-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 3.9E-11 1.3E-15 87.9 3.7 52 133-184 3-57 (60)
14 4f3l_A Mclock, circadian locom 98.9 1.3E-09 4.5E-14 104.8 5.3 52 132-183 12-64 (361)
15 2lfh_A DNA-binding protein inh 98.7 5.1E-09 1.8E-13 78.1 3.5 45 138-182 20-67 (68)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 6.2E-09 2.1E-13 101.2 3.1 52 132-183 13-68 (387)
17 4ath_A MITF, microphthalmia-as 98.6 5.8E-08 2E-12 75.1 6.5 51 144-194 4-58 (83)
18 4aya_A DNA-binding protein inh 98.0 8.1E-06 2.8E-10 64.9 5.7 46 139-184 32-80 (97)
19 1zpv_A ACT domain protein; str 97.2 0.0037 1.3E-07 47.4 10.6 73 240-317 5-77 (91)
20 1u8s_A Glycine cleavage system 96.7 0.0058 2E-07 53.1 9.0 72 240-317 6-77 (192)
21 2nyi_A Unknown protein; protei 96.1 0.023 7.8E-07 49.8 9.0 49 240-289 5-53 (195)
22 2nyi_A Unknown protein; protei 95.8 0.032 1.1E-06 48.8 8.7 72 240-317 93-170 (195)
23 1u8s_A Glycine cleavage system 95.5 0.074 2.5E-06 46.0 9.8 73 240-317 93-173 (192)
24 2ko1_A CTR148A, GTP pyrophosph 95.4 0.071 2.4E-06 39.5 8.0 51 240-291 5-55 (88)
25 3o1l_A Formyltetrahydrofolate 93.2 0.34 1.2E-05 45.6 9.2 74 239-316 21-96 (302)
26 3p96_A Phosphoserine phosphata 93.1 0.32 1.1E-05 46.6 9.1 74 240-317 12-85 (415)
27 3obi_A Formyltetrahydrofolate 92.9 0.49 1.7E-05 44.1 9.7 74 239-316 5-80 (288)
28 3n0v_A Formyltetrahydrofolate 92.0 0.78 2.7E-05 42.7 9.8 72 240-316 8-81 (286)
29 3lou_A Formyltetrahydrofolate 91.2 1.3 4.3E-05 41.4 10.3 76 239-316 9-86 (292)
30 3nrb_A Formyltetrahydrofolate 88.7 1.8 6.1E-05 40.2 9.1 71 240-316 7-79 (287)
31 2f1f_A Acetolactate synthase i 84.9 1.8 6.3E-05 37.0 6.4 47 241-288 4-52 (164)
32 2jhe_A Transcription regulator 84.9 1.9 6.5E-05 35.4 6.4 35 242-277 2-36 (190)
33 2fgc_A Acetolactate synthase, 84.3 1.9 6.5E-05 38.0 6.4 47 241-288 30-78 (193)
34 2pc6_A Probable acetolactate s 81.8 3.7 0.00012 35.2 7.1 47 241-288 5-53 (165)
35 2f06_A Conserved hypothetical 81.3 3.9 0.00013 33.1 6.9 63 243-319 75-137 (144)
36 2wt7_A Proto-oncogene protein 74.0 10 0.00035 27.0 6.5 45 140-197 1-45 (63)
37 1y7p_A Hypothetical protein AF 71.4 5.2 0.00018 36.0 5.3 49 241-291 5-57 (223)
38 2f06_A Conserved hypothetical 68.4 26 0.00088 28.1 8.6 37 242-279 8-44 (144)
39 1zme_C Proline utilization tra 59.8 9.1 0.00031 27.0 3.7 24 175-198 44-67 (70)
40 2ke4_A CDC42-interacting prote 59.8 23 0.00079 27.6 6.3 63 134-197 8-91 (98)
41 1pd7_B MAD1; PAH2, SIN3, eukar 56.1 13 0.00046 22.1 3.2 20 164-183 2-21 (26)
42 2oqq_A Transcription factor HY 54.5 13 0.00045 24.7 3.4 24 175-198 3-26 (42)
43 2lqj_A Mg2+ transport protein; 53.3 50 0.0017 25.3 7.3 69 240-314 8-79 (94)
44 1dh3_A Transcription factor CR 51.9 14 0.00047 25.8 3.4 24 175-198 22-45 (55)
45 3he4_B Synzip5; heterodimeric 51.7 25 0.00086 23.0 4.4 26 170-195 5-30 (46)
46 2jee_A YIIU; FTSZ, septum, coi 51.5 19 0.00067 27.2 4.4 27 170-196 15-41 (81)
47 3ra3_B P2F; coiled coil domain 50.7 11 0.00036 22.4 2.2 21 177-197 2-22 (28)
48 2er8_A Regulatory protein Leu3 46.9 11 0.00039 26.7 2.5 23 174-196 48-70 (72)
49 2l5g_A GPS2 protein, G protein 45.6 35 0.0012 22.0 4.3 29 166-194 6-34 (38)
50 2dtj_A Aspartokinase; protein- 42.7 1.2E+02 0.004 25.3 8.7 51 238-289 13-67 (178)
51 2dt9_A Aspartokinase; protein- 42.1 1.4E+02 0.0048 24.4 9.1 35 238-273 14-49 (167)
52 2dgc_A Protein (GCN4); basic d 39.2 27 0.00093 24.9 3.4 23 175-197 30-52 (63)
53 1jnm_A Proto-oncogene C-JUN; B 37.0 31 0.0011 24.3 3.4 24 174-197 21-44 (62)
54 2qmx_A Prephenate dehydratase; 36.8 1.3E+02 0.0043 27.7 8.5 61 243-308 203-264 (283)
55 2re1_A Aspartokinase, alpha an 36.5 1.1E+02 0.0037 25.1 7.4 35 238-273 23-58 (167)
56 1t2k_D Cyclic-AMP-dependent tr 34.2 37 0.0013 23.8 3.4 23 175-197 22-44 (61)
57 1xkm_B Distinctin chain B; por 33.6 36 0.0012 19.8 2.6 19 168-186 4-22 (26)
58 1gd2_E Transcription factor PA 33.4 40 0.0014 24.7 3.6 19 175-193 29-47 (70)
59 1kd8_B GABH BLL, GCN4 acid bas 33.4 41 0.0014 21.5 3.1 21 177-197 3-23 (36)
60 3p96_A Phosphoserine phosphata 33.3 1.7E+02 0.0057 27.4 9.0 74 240-319 101-175 (415)
61 2akf_A Coronin-1A; coiled coil 32.3 56 0.0019 20.0 3.4 22 176-197 7-28 (32)
62 2wuj_A Septum site-determining 30.4 51 0.0017 22.9 3.6 28 169-196 28-55 (57)
63 3w03_C DNA repair protein XRCC 28.6 62 0.0021 28.1 4.6 29 169-197 146-174 (184)
64 1hwt_C Protein (heme activator 28.2 20 0.00067 25.9 1.1 23 174-196 57-79 (81)
65 3v86_A De novo design helix; c 27.7 48 0.0017 19.4 2.5 20 176-195 1-20 (27)
66 2qmw_A PDT, prephenate dehydra 27.7 1.9E+02 0.0064 26.3 7.9 62 242-309 188-253 (267)
67 2re1_A Aspartokinase, alpha an 27.5 1.7E+02 0.0057 24.0 7.0 35 238-273 101-138 (167)
68 3c3g_A Alpha/beta peptide with 27.2 62 0.0021 20.3 3.1 21 177-197 2-22 (33)
69 1pyi_A Protein (pyrimidine pat 27.0 80 0.0027 23.3 4.5 24 174-197 47-70 (96)
70 3mwb_A Prephenate dehydratase; 26.6 2.2E+02 0.0075 26.4 8.3 63 242-309 203-267 (313)
71 3m48_A General control protein 25.8 42 0.0014 21.1 2.1 20 178-197 3-22 (33)
72 2wq1_A General control protein 25.7 69 0.0023 20.1 3.1 21 177-197 2-22 (33)
73 2oxj_A Hybrid alpha/beta pepti 25.7 68 0.0023 20.2 3.1 21 177-197 3-23 (34)
74 1kd8_A GABH AIV, GCN4 acid bas 24.8 49 0.0017 21.2 2.3 19 178-196 4-22 (36)
75 3luy_A Probable chorismate mut 24.6 3.9E+02 0.013 24.9 9.7 56 249-309 217-273 (329)
76 3muj_A Transcription factor CO 23.5 81 0.0028 26.2 4.1 36 145-180 94-133 (138)
77 2dnr_A Synaptojanin-1; RRM dom 23.1 1.7E+02 0.0059 22.3 5.7 43 239-285 8-56 (91)
78 3c3f_A Alpha/beta peptide with 23.0 83 0.0028 19.8 3.1 21 177-197 3-23 (34)
79 1gk7_A Vimentin; intermediate 22.4 76 0.0026 20.5 3.0 20 173-192 18-37 (39)
80 3pt3_A E3 ubiquitin-protein li 21.6 40 0.0014 27.0 1.9 21 298-318 98-118 (118)
81 3coq_A Regulatory protein GAL4 21.3 79 0.0027 22.9 3.4 23 174-196 44-66 (89)
82 3q4f_C DNA repair protein XRCC 20.9 1.1E+02 0.0038 26.5 4.6 29 169-197 155-183 (186)
83 4dzn_A Coiled-coil peptide CC- 20.2 1.1E+02 0.0038 18.6 3.1 19 177-195 4-22 (33)
84 1a93_B MAX protein, coiled coi 20.0 82 0.0028 19.9 2.7 16 180-195 12-27 (34)
85 2hy6_A General control protein 20.0 70 0.0024 20.2 2.3 19 178-196 4-22 (34)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.65 E-value=1e-16 Score=124.90 Aligned_cols=67 Identities=25% Similarity=0.450 Sum_probs=63.3
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCCCC-CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVPNI-TKMDKASLVGDAVSYVQELQTTAKNLKAEIADLEASS 198 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~-~K~dKasIL~~Ai~YIk~Lq~~~~~L~~~~~~l~~~~ 198 (324)
+|..|+.+||+||++||++|.+|+++||+. .|++|++||.+||+||++||.+++.|+++++.|+...
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999987 8999999999999999999999999999999987653
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=1.3e-15 Score=117.88 Aligned_cols=66 Identities=27% Similarity=0.485 Sum_probs=62.0
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVPNI--TKMDKASLVGDAVSYVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~--~K~dKasIL~~Ai~YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
+|..|+..||+||..||++|..|+++||.. .|++|++||..||+||+.|++++++|+.+++.|+..
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999975 699999999999999999999999999999998753
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.56 E-value=2.6e-15 Score=116.92 Aligned_cols=66 Identities=27% Similarity=0.485 Sum_probs=60.6
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVPNI--TKMDKASLVGDAVSYVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~--~K~dKasIL~~Ai~YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
+|..|+..||+||.+||++|..|+++||.. .|++|++||..||+||+.|+.++++|+.+++.|+..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377899999999999999999999999974 799999999999999999999999999888887654
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=3.4e-15 Score=117.72 Aligned_cols=65 Identities=25% Similarity=0.446 Sum_probs=59.2
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVPNI---TKMDKASLVGDAVSYVQELQTTAKNLKAEIADLEA 196 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~---~K~dKasIL~~Ai~YIk~Lq~~~~~L~~~~~~l~~ 196 (324)
+|..|+..||+||..||++|..|+++||.. .|++|++||.+||+||++|+.+.+.|..+++.|+.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999975 59999999999999999999999988877776654
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=1.3e-14 Score=112.38 Aligned_cols=65 Identities=25% Similarity=0.338 Sum_probs=60.1
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042465 133 RSRTLISEQKRRGKMKEKLYQLRALVPNI---TKMDKASLVGDAVSYVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 133 r~~h~~~ER~RR~~in~~~~~LrslvP~~---~K~dKasIL~~Ai~YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
|..|+..||+||..||.+|..|+++||.. .|++|++||..|++||+.|+.+.++|+.+++.|+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999964 688999999999999999999999999999888654
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.51 E-value=9.9e-15 Score=120.99 Aligned_cols=63 Identities=19% Similarity=0.413 Sum_probs=53.1
Q ss_pred CcCcccchHHHHHHHHHHHHHHHHHhcCCCC----CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042465 131 DHRSRTLISEQKRRGKMKEKLYQLRALVPNI----TKMDKASLVGDAVSYVQELQTTAKNLKAEIAD 193 (324)
Q Consensus 131 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~~----~K~dKasIL~~Ai~YIk~Lq~~~~~L~~~~~~ 193 (324)
.+|..|+.+||+||++||++|.+|++|||.+ .|++|++||..||+||++||.+++.|+++...
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999976 37899999999999999999999999876433
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=4.7e-15 Score=110.31 Aligned_cols=55 Identities=25% Similarity=0.487 Sum_probs=50.0
Q ss_pred CcCcccchHHHHHHHHHHHHHHHHHhcCCCCC------CCCcccHHHHHHHHHHHHHHHHH
Q 042465 131 DHRSRTLISEQKRRGKMKEKLYQLRALVPNIT------KMDKASLVGDAVSYVQELQTTAK 185 (324)
Q Consensus 131 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~~~------K~dKasIL~~Ai~YIk~Lq~~~~ 185 (324)
.+|..|+.+||+||++||++|.+|++|||.+. |++|++||..||+||++||++.+
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 35889999999999999999999999999764 78999999999999999987653
No 8
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=110.17 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=52.7
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCCCC-CCCCcccHHHHHHHHHHHHHHHHHHHH
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVPNI-TKMDKASLVGDAVSYVQELQTTAKNLK 188 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~-~K~dKasIL~~Ai~YIk~Lq~~~~~L~ 188 (324)
+|.+|+.+||+||++||++|.+|++|||.. .|++|++||..||+||+.||.+..-|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 488999999999999999999999999965 699999999999999999999887654
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.48 E-value=5.9e-15 Score=109.41 Aligned_cols=53 Identities=30% Similarity=0.436 Sum_probs=48.5
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCCCC-------CCCCcccHHHHHHHHHHHHHHHH
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVPNI-------TKMDKASLVGDAVSYVQELQTTA 184 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~-------~K~dKasIL~~Ai~YIk~Lq~~~ 184 (324)
+|.+|+.+||+||++||.+|.+|++|||.+ .|.+||+||..||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999953 57789999999999999998765
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.40 E-value=1e-13 Score=106.45 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=47.9
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCCC---CCCC-CcccHHHHHHHHHHHHHHHHHHHH
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVPN---ITKM-DKASLVGDAVSYVQELQTTAKNLK 188 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP~---~~K~-dKasIL~~Ai~YIk~Lq~~~~~L~ 188 (324)
+|..|+..||+||..||++|.+|+.+||. ..|. +|++||..||+||+.||+++++++
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999995 3455 688999999999999999988764
No 11
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.37 E-value=7.5e-14 Score=106.34 Aligned_cols=51 Identities=31% Similarity=0.428 Sum_probs=47.7
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCCCC----CCCCcccHHHHHHHHHHHHHH
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVPNI----TKMDKASLVGDAVSYVQELQT 182 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~----~K~dKasIL~~Ai~YIk~Lq~ 182 (324)
+|.+|+.+||+||++||+.|.+|++|||.+ .|+||++||..||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999965 799999999999999999964
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.11 E-value=2.3e-11 Score=91.33 Aligned_cols=53 Identities=21% Similarity=0.402 Sum_probs=49.0
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCCCC--CCCCcccHHHHHHHHHHHHHHHH
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVPNI--TKMDKASLVGDAVSYVQELQTTA 184 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~--~K~dKasIL~~Ai~YIk~Lq~~~ 184 (324)
+|..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||++|++.+
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999999964 68999999999999999998754
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.10 E-value=3.9e-11 Score=87.94 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=47.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHhcCCCC---CCCCcccHHHHHHHHHHHHHHHH
Q 042465 133 RSRTLISEQKRRGKMKEKLYQLRALVPNI---TKMDKASLVGDAVSYVQELQTTA 184 (324)
Q Consensus 133 r~~h~~~ER~RR~~in~~~~~LrslvP~~---~K~dKasIL~~Ai~YIk~Lq~~~ 184 (324)
|..|+..||+|+..||+.|..||.+||.. .|++|..+|..||+||..|++.+
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999999964 58999999999999999998765
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.87 E-value=1.3e-09 Score=104.76 Aligned_cols=52 Identities=27% Similarity=0.498 Sum_probs=42.6
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCC-CCCCCCcccHHHHHHHHHHHHHHH
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVP-NITKMDKASLVGDAVSYVQELQTT 183 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP-~~~K~dKasIL~~Ai~YIk~Lq~~ 183 (324)
+|.+|+.+||+||++||..|.+|++||| +..|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3889999999999999999999999999 557999999999999999999764
No 15
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.73 E-value=5.1e-09 Score=78.08 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCC---CCCCcccHHHHHHHHHHHHHH
Q 042465 138 ISEQKRRGKMKEKLYQLRALVPNI---TKMDKASLVGDAVSYVQELQT 182 (324)
Q Consensus 138 ~~ER~RR~~in~~~~~LrslvP~~---~K~dKasIL~~Ai~YIk~Lq~ 182 (324)
..||+|+..||+.|..||.+||.. .|++|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 459999999999999999999964 689999999999999999974
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.68 E-value=6.2e-09 Score=101.19 Aligned_cols=52 Identities=31% Similarity=0.402 Sum_probs=48.5
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCC----CCCCCCcccHHHHHHHHHHHHHHH
Q 042465 132 HRSRTLISEQKRRGKMKEKLYQLRALVP----NITKMDKASLVGDAVSYVQELQTT 183 (324)
Q Consensus 132 ~r~~h~~~ER~RR~~in~~~~~LrslvP----~~~K~dKasIL~~Ai~YIk~Lq~~ 183 (324)
+|.+|+.+||+||++||..|.+|++||| ...|+||++||..||.||+.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 4889999999999999999999999999 568999999999999999999853
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.62 E-value=5.8e-08 Score=75.11 Aligned_cols=51 Identities=20% Similarity=0.400 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCC----CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042465 144 RGKMKEKLYQLRALVPNI----TKMDKASLVGDAVSYVQELQTTAKNLKAEIADL 194 (324)
Q Consensus 144 R~~in~~~~~LrslvP~~----~K~dKasIL~~Ai~YIk~Lq~~~~~L~~~~~~l 194 (324)
|..||++|.+|..|||.+ .|.+|++||..|++||++||++.+.++++..++
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~ 58 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 578999999999999999999999888776554
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.99 E-value=8.1e-06 Score=64.94 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC---CCCCcccHHHHHHHHHHHHHHHH
Q 042465 139 SEQKRRGKMKEKLYQLRALVPNI---TKMDKASLVGDAVSYVQELQTTA 184 (324)
Q Consensus 139 ~ER~RR~~in~~~~~LrslvP~~---~K~dKasIL~~Ai~YIk~Lq~~~ 184 (324)
.||.|=..||+.|..||.+||.. .|++|..+|.-||+||+.|+.-+
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L 80 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIAL 80 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 35677789999999999999964 68999999999999999997655
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.20 E-value=0.0037 Score=47.40 Aligned_cols=73 Identities=11% Similarity=0.197 Sum_probs=58.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCCCcc
Q 042465 240 GFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAESERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQGFQV 317 (324)
Q Consensus 240 ~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g~~~ 317 (324)
.+.|.|.|++++|++.+|..+|-+. |.+|.+.+..+..+.+...+.+.+.+. ..++.|...+...-...|.++
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~-~~NI~~i~~~~~~~~~~~~i~v~~~~~----~~l~~l~~~L~~~~~~~~~~~ 77 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAEL-GLNIDDISQTVLDEYFTMMAVVSSDEK----QDFTYLRNEFEAFGQTLNVKI 77 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEEEEEEEEESSC----CCHHHHHHHHHHHHHHHTEEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHc-CCCEEEEEeEEEcCEEEEEEEEEeCCC----CCHHHHHHHHHHHHHHcCCEE
Confidence 3679999999999999999999999 899999998887787777777766542 367888888876655555544
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.74 E-value=0.0058 Score=53.10 Aligned_cols=72 Identities=8% Similarity=0.155 Sum_probs=58.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCCCcc
Q 042465 240 GFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAESERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQGFQV 317 (324)
Q Consensus 240 ~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g~~~ 317 (324)
.+.|.|.|++++|++..|..+|.+. |++|+.+.+.+..+.+...+.+.... ...+.|+..+..++...|..+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~-g~NI~d~~~~~~~~~f~~~~~v~~~~-----~~~~~l~~~L~~~~~~~~~~~ 77 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQA-GCNIIDSRIAMFGKEFTLLMLISGSP-----SNITRVETTLPLLGQQHDLIT 77 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEEEEEEEEECH-----HHHHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHC-CCCEEeeeeeecCCceEEEEEEecCC-----CCHHHHHHHHHHHHHhcCCEE
Confidence 4679999999999999999999999 99999999998888887766665421 256778888887765556554
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.11 E-value=0.023 Score=49.76 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=43.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEe
Q 042465 240 GFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAESERFVLTFTLNA 289 (324)
Q Consensus 240 ~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~~~~~~t~~vkv 289 (324)
.+.|.|.|++++|++..|..+|.++ |++|+.+.+.+..+.|...+.+..
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~-g~NI~da~q~~~~~~f~m~~~v~~ 53 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNI-SANVESSRMACLGGDFAMIVLVSL 53 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHC-CCCEEEEEeEEECCeEEEEEEEEe
Confidence 4679999999999999999999999 899999999999898877666654
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.83 E-value=0.032 Score=48.81 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=55.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecC------CeEEEEEEEEecCCccccCChHHHHHHHHHHHhhC
Q 042465 240 GFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAES------ERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQ 313 (324)
Q Consensus 240 ~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~------~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~ 313 (324)
.+.|.|.|++++|++..|...|-++ |++|..+...+.+ +.|...+.+.+.. ... +.|+..+..+....
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~-g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~----~~~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKK-GANIVELETETLPAPFAGFTLFRMGSRVAFPF----PLY-QEVVTALSRVEEEF 166 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG----GGH-HHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHc-CCCEEEceeeecccccCCCCeEEEEEEEEcCC----Ccc-HHHHHHHHHHHHHc
Confidence 4789999999999999999999999 8999999988776 4555555554432 234 78888888766666
Q ss_pred CCcc
Q 042465 314 GFQV 317 (324)
Q Consensus 314 g~~~ 317 (324)
|.++
T Consensus 167 ~~di 170 (195)
T 2nyi_A 167 GVDI 170 (195)
T ss_dssp TCEE
T ss_pred CeEE
Confidence 6554
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.53 E-value=0.074 Score=45.96 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=56.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecC--------CeEEEEEEEEecCCccccCChHHHHHHHHHHHh
Q 042465 240 GFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAES--------ERFVLTFTLNAKDNDQISMQLPNLKLWVANALL 311 (324)
Q Consensus 240 ~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~--------~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~ 311 (324)
.+.|.|.|++++|++..|..+|-+. |++|..+...+.+ +.|...+.+.+. ...+.+.|+..+.....
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~-~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~----~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQR-QIGMASLSAQTISKDKLHSEQNQFHIAISARVD----SGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHT-TCCEEEEEEEEEC--------CEEEEEEEEEEC----TTSCHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHc-CCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC----CCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999 8999998887764 355544544432 24578899999987766
Q ss_pred hCCCcc
Q 042465 312 NQGFQV 317 (324)
Q Consensus 312 n~g~~~ 317 (324)
.-|.++
T Consensus 168 ~~~~~~ 173 (192)
T 1u8s_A 168 ALDVQG 173 (192)
T ss_dssp HHTCEE
T ss_pred HhCceE
Confidence 666553
No 24
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.37 E-value=0.071 Score=39.54 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=41.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEecC
Q 042465 240 GFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAESERFVLTFTLNAKD 291 (324)
Q Consensus 240 ~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~~~~~~t~~vkv~~ 291 (324)
.+.|.|.+.+++|+|.+|..+|.+. |++|.+.++.+.++.+...|.+.+.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~-~inI~~i~~~~~~~~~~~~i~v~~~~ 55 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKF-DTNIRTIVLNAKDGIFTCNLMIFVKN 55 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTS-SSCEEEEEEEECSSEEEEEEEEEESS
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHC-CCCeEEEEEEEcCCEEEEEEEEEECC
Confidence 3678899999999999999999999 89999999887666445555555543
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=93.19 E-value=0.34 Score=45.56 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=54.3
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeec--CCeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCCCc
Q 042465 239 RGFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAE--SERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQGFQ 316 (324)
Q Consensus 239 ~~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~--~~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g~~ 316 (324)
..+.|.|.|++++|+...|...|-+. |++|+.++-... ++.|+. ++.+.... ...+.+.|+..+...-..-|.+
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~-g~NI~d~~q~~d~~~g~FfM--r~~~~~~~-~~~~~~~L~~~l~~la~~l~m~ 96 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASH-NGWITEASHHSDNLSGWFFM--RHEIRADT-LPFDLDGFREAFTPIAEEFSMD 96 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHT-TCCEEEEEEEEETTTTEEEE--EEEEEGGG-SSSCHHHHHHHHHHHHHHHTCE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHC-CCCEEEeeEEecCCCCeEEE--EEEEecCC-CCCCHHHHHHHHHHHHHHhCCe
Confidence 34789999999999999999999999 899999987754 456544 44444322 2467889998886544434443
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=93.11 E-value=0.32 Score=46.61 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=57.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCCCcc
Q 042465 240 GFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAESERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQGFQV 317 (324)
Q Consensus 240 ~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g~~~ 317 (324)
.+.|+|.|++|+|+...|...|-+. |.+|+.++-...++.|...+.+.+... ..+.+.|+..+...-..-|.++
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~-~~nI~d~~q~~~~~~f~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~ 85 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRH-GVELLNVEQVVIRHRLTLGVLVCCPAD---VADGPALRHDVEAAIRKVGLDV 85 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTT-TCEEEEEEEEEETTEEEEEEEEEECHH---HHTSHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHC-CCCEEEeeeEEECCEeEEEEEEEecCC---cCCHHHHHHHHHHHHHHcCeEE
Confidence 4779999999999999999999999 899999998888888766665555331 2356788888876545555544
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=92.89 E-value=0.49 Score=44.10 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=54.5
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHccCCceEEEEEee--ecCCeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCCCc
Q 042465 239 RGFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLV--AESERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQGFQ 316 (324)
Q Consensus 239 ~~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vs--t~~~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g~~ 316 (324)
..+.|.|.|++++|+...|...|-+. |++|+.++-. ...+.|+..+.+.+.. ...+.+.|+..+...=..-|.+
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~~~~~~~L~~~f~~la~~~~m~ 80 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFEN-GQNILDAQQYNDTESGHFFMRVVFNAAA---KVIPLASLRTGFGVIAAKFTMG 80 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHT-TEEEEEEEEEEETTTTEEEEEEEEEESS---CCCCHHHHHHHHHHHHHHTTCE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHC-CCcEEeeeeeecCCCCceEEEEEEEcCC---CCCCHHHHHHHHHHHHHHcCCE
Confidence 34779999999999999999999999 8999998864 3445665444444322 2467889998887654444544
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=91.97 E-value=0.78 Score=42.70 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=53.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHccCCceEEEEEee--ecCCeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCCCc
Q 042465 240 GFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLV--AESERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQGFQ 316 (324)
Q Consensus 240 ~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vs--t~~~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g~~ 316 (324)
.+.|.|.|++++|+...|...|-+. |++|+.++-. ...+.|.. ++.+...+ ..+.+.|+..+...-..-|.+
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffm--r~~~~~~~--~~~~~~L~~~f~~la~~l~m~ 81 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQ-RCYVTEHHSFDDRQSGRFFI--RVEFRQPD--DFDEAGFRAGLAERSEAFGMA 81 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTTTEEEE--EEEEECCS--SCCHHHHHHHHHHHHGGGTCE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHC-CCCeeeeeeeccCCCCeeEE--EEEEecCC--CCCHHHHHHHHHHHHHHcCCE
Confidence 4779999999999999999999999 8999998876 34456554 44444332 477889998887544444444
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=91.16 E-value=1.3 Score=41.41 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=52.9
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHccCCceEEEEEee--ecCCeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCCCc
Q 042465 239 RGFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLV--AESERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQGFQ 316 (324)
Q Consensus 239 ~~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vs--t~~~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g~~ 316 (324)
..+.|.|.|++++|+...|...|-+. |++|+.++-. ...+.|+..+.+.....+ ...+.+.|+..+...-..-|.+
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-~~~~~~~L~~~f~~la~~~~m~ 86 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRH-RCYVDELTVFDDDLSARFFVRCVFHATDDA-DALRVDALRREFEPIAERFRMQ 86 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHT-TEEEEEEEEEEETTTTEEEEEEEEEECC-----CCHHHHHHHHHHHHHHHTCE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHC-CCCEEeeEEEecCCCCceEEEEEEEccCcc-cCCCHHHHHHHHHHHHHhcCcE
Confidence 34779999999999999999999999 8999998876 345666544433332111 2467888888886544434443
No 30
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=88.66 E-value=1.8 Score=40.24 Aligned_cols=71 Identities=10% Similarity=0.170 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHccCCceEEEEEee--ecCCeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCCCc
Q 042465 240 GFYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLV--AESERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQGFQ 316 (324)
Q Consensus 240 ~v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vs--t~~~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g~~ 316 (324)
.+.|.|.|++++|+...|...|-+. |.+|+.++-. ...+.|+. ++.+.... .+.+.|+..+...-..-|.+
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffm--r~~~~~~~---~~~~~L~~~f~~la~~~~m~ 79 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNN-GANIVEAEQFNDEDSSKFFM--RVSVEIPV---AGVNDFNSAFGKVVEKYNAE 79 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTTTEEEE--EEEEECCC------CHHHHHHHHHHGGGTCE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHC-CCCEEeeeeeecCCCCeEEE--EEEEEcCC---CCHHHHHHHHHHHHHHcCCe
Confidence 4789999999999999999999999 8999998875 33455554 44443321 23457777776543333433
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=84.87 E-value=1.8 Score=36.98 Aligned_cols=47 Identities=9% Similarity=0.165 Sum_probs=37.6
Q ss_pred EEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecCC--eEEEEEEEE
Q 042465 241 FYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAESE--RFVLTFTLN 288 (324)
Q Consensus 241 v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~~--~~~~t~~vk 288 (324)
..|.|....++|+|.+|..+|... |++|.+.++....+ ....+|++.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~r-g~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQR-GYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTT-TCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHC-CCCeeeceeeecCCCCEEEEEEEEe
Confidence 457888999999999999999999 89999998876553 445555554
No 32
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=84.85 E-value=1.9 Score=35.37 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=32.3
Q ss_pred EEEEEecCCCChHHHHHHHHHccCCceEEEEEeeec
Q 042465 242 YLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAE 277 (324)
Q Consensus 242 ~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~ 277 (324)
.|+|.|.+|.|+|.+|+++|-+. ++++..+++.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~-~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLR-GIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHT-TCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHc-CCCeEEEEEecC
Confidence 47899999999999999999999 799999998765
No 33
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=84.34 E-value=1.9 Score=38.00 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=37.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecCC--eEEEEEEEE
Q 042465 241 FYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAESE--RFVLTFTLN 288 (324)
Q Consensus 241 v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~~--~~~~t~~vk 288 (324)
..|.|..+.++|.|.+|...|... |++|.+..+....+ ...+||++.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrR-G~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARR-GFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTT-TCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEECCCChHHHHHHHHHHHC-CceEEEEEeeccCCCCEEEEEEEEE
Confidence 457788899999999999999999 89999988864443 445555554
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=81.80 E-value=3.7 Score=35.18 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=38.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecC--CeEEEEEEEE
Q 042465 241 FYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAES--ERFVLTFTLN 288 (324)
Q Consensus 241 v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~--~~~~~t~~vk 288 (324)
..|.|....++|+|.+|...|... |++|.+.++.... +....+|++.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~r-g~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSAR-GYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHH-TCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHC-CCcEEEEEEEecCCCCEEEEEEEEe
Confidence 468888999999999999999999 8999998887554 3445555554
No 35
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=81.26 E-value=3.9 Score=33.10 Aligned_cols=63 Identities=10% Similarity=0.054 Sum_probs=42.8
Q ss_pred EEEEecCCCChHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCCCcccc
Q 042465 243 LKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAESERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQGFQVLI 319 (324)
Q Consensus 243 I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g~~~~~ 319 (324)
|-+..+.+||.+.+++++|.+. |++|...-.+..+.+..+. +.+++. .....+|.+.|+++..
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~-~InI~~~~~~~~~~~~~~~--i~~~d~-----------~~A~~~L~~~g~~v~~ 137 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAE-GVFIEYMYSFANNNVANVV--IRPSNM-----------DKCIEVLKEKKVDLLA 137 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHT-TCCEEEEEEEEETTEEEEE--EEESCH-----------HHHHHHHHHTTCEEEC
T ss_pred EEEEeCCCCcHHHHHHHHHHHC-CCCEEEEEEEccCCcEEEE--EEeCCH-----------HHHHHHHHHcCCEEec
Confidence 4455678999999999999999 8999654433223444333 344332 4556688889998753
No 36
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.97 E-value=10 Score=26.99 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042465 140 EQKRRGKMKEKLYQLRALVPNITKMDKASLVGDAVSYVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 140 ER~RR~~in~~~~~LrslvP~~~K~dKasIL~~Ai~YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
||++|.+...+..+.++= ..-..|+..|+.+++.|+.++..|...
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777752 234478888888888888887777654
No 37
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=71.41 E-value=5.2 Score=35.96 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=35.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecC----CeEEEEEEEEecC
Q 042465 241 FYLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAES----ERFVLTFTLNAKD 291 (324)
Q Consensus 241 v~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~----~~~~~t~~vkv~~ 291 (324)
+.|.|.+.+++|+|.+|+.+|-+. +.+|.+.+..+.. +.. .++++++.+
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~-kiNIltIn~~~~~kG~~ng~-A~I~IEV~d 57 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEE-GGNITFAQTFLIKHGEHEGK-ALIYFEIEG 57 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC-----CEEEEEEEECCSSTTTTE-EEEEEEECS
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHc-CCCceEEEEEccccCCcCCE-EEEEEEECC
Confidence 568899999999999999999999 7999999988764 322 333366654
No 38
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=68.36 E-value=26 Score=28.05 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=29.7
Q ss_pred EEEEEecCCCChHHHHHHHHHccCCceEEEEEeeecCC
Q 042465 242 YLKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAESE 279 (324)
Q Consensus 242 ~I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~~ 279 (324)
.|.|..+.++|.+.+|..+|.+. |++|....+....+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~-~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKE-NINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHT-TCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHC-CCCEEEEEEEecCC
Confidence 46667789999999999999999 89998776653333
No 39
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=59.84 E-value=9.1 Score=26.99 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 042465 175 SYVQELQTTAKNLKAEIADLEASS 198 (324)
Q Consensus 175 ~YIk~Lq~~~~~L~~~~~~l~~~~ 198 (324)
.||..|+.+++.|+..+..|++..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999987754
No 40
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=59.81 E-value=23 Score=27.63 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=43.7
Q ss_pred cccchHHHHHHHHHHHHHHHHHhcCC--------------------CC-CCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 042465 134 SRTLISEQKRRGKMKEKLYQLRALVP--------------------NI-TKMDKASLVGDAVSYVQELQTTAKNLKAEIA 192 (324)
Q Consensus 134 ~~h~~~ER~RR~~in~~~~~LrslvP--------------------~~-~K~dKasIL~~Ai~YIk~Lq~~~~~L~~~~~ 192 (324)
-+|.+.||| |.+|..++..|..-+- .. ...+-..-|.++..-|..|+..+.+++.-+.
T Consensus 8 ~s~LPpeqR-kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 8 FSHLPPEQQ-RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SSSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777754 4577888877765543 11 1122244588888899999999999999888
Q ss_pred HHhhh
Q 042465 193 DLEAS 197 (324)
Q Consensus 193 ~l~~~ 197 (324)
+++..
T Consensus 87 e~e~~ 91 (98)
T 2ke4_A 87 EAESR 91 (98)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 88654
No 41
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=56.06 E-value=13 Score=22.12 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=15.9
Q ss_pred CCcccHHHHHHHHHHHHHHH
Q 042465 164 MDKASLVGDAVSYVQELQTT 183 (324)
Q Consensus 164 ~dKasIL~~Ai~YIk~Lq~~ 183 (324)
+....+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45677899999999877654
No 42
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=54.49 E-value=13 Score=24.68 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 042465 175 SYVQELQTTAKNLKAEIADLEASS 198 (324)
Q Consensus 175 ~YIk~Lq~~~~~L~~~~~~l~~~~ 198 (324)
.|+-.|+.+++.|+..+.+|+...
T Consensus 3 aYl~eLE~r~k~le~~naeLEerv 26 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERL 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 488889999998888888887643
No 43
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=53.28 E-value=50 Score=25.25 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=46.2
Q ss_pred eEEEEEEecCC--CChHHHHHHHHHccCCceEEEEEeeecC-CeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCC
Q 042465 240 GFYLKLVSNKG--EGVAASLYEALESLTSFNVQNSNLVAES-ERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQG 314 (324)
Q Consensus 240 ~v~I~I~C~~r--~glL~~Il~aLesl~gL~V~sa~vst~~-~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g 314 (324)
.+.|.|.|... ..+...|+++|+.. ++.+.+......+ +.+.++.++-.. ..+...|.+.+.+.-+.-|
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~-~~~l~~l~s~~~~~~~veI~A~L~at-----~~~~~~Le~iv~rLs~ep~ 79 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSN-DITLRGIRTGPAGDDNITLTAHLLMV-----GHTPAKLERLVAELSLQPG 79 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHH-TEEEEEEEEEECSSSCEEEEEEEEEE-----SCCHHHHHHHHHHHHHSTT
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcC-CCceeEeeeecCCCCeEEEEEEEEec-----CCCHHHHHHHHHHHhCCCC
Confidence 47899999875 66888899999998 6999988855433 335444444442 3445666666666555433
No 44
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=51.91 E-value=14 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 042465 175 SYVQELQTTAKNLKAEIADLEASS 198 (324)
Q Consensus 175 ~YIk~Lq~~~~~L~~~~~~l~~~~ 198 (324)
.||..|+.++..|+.++..|....
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889888888888888876543
No 45
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=51.71 E-value=25 Score=22.97 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042465 170 VGDAVSYVQELQTTAKNLKAEIADLE 195 (324)
Q Consensus 170 L~~Ai~YIk~Lq~~~~~L~~~~~~l~ 195 (324)
+.+--+||+.|+.+..+|+.-++.|.
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45667899999999988887776664
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=51.52 E-value=19 Score=27.24 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042465 170 VGDAVSYVQELQTTAKNLKAEIADLEA 196 (324)
Q Consensus 170 L~~Ai~YIk~Lq~~~~~L~~~~~~l~~ 196 (324)
+..||+-|.-||.++++|++++..|..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999887644
No 47
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.67 E-value=11 Score=22.35 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042465 177 VQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 177 Ik~Lq~~~~~L~~~~~~l~~~ 197 (324)
|+.|+++...|++++..|+..
T Consensus 2 irrlkqknarlkqeiaaleye 22 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYE 22 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHH
Confidence 567888888888888887654
No 48
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=46.88 E-value=11 Score=26.70 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042465 174 VSYVQELQTTAKNLKAEIADLEA 196 (324)
Q Consensus 174 i~YIk~Lq~~~~~L~~~~~~l~~ 196 (324)
-.||..|+.+++.|+..+..|.+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 38999999999999998887654
No 49
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.56 E-value=35 Score=22.04 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=24.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042465 166 KASLVGDAVSYVQELQTTAKNLKAEIADL 194 (324)
Q Consensus 166 KasIL~~Ai~YIk~Lq~~~~~L~~~~~~l 194 (324)
.+.-|.++-+-|..|+.+++.|++++.+|
T Consensus 6 e~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 6 ERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568889999999999999999998775
No 50
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=42.71 E-value=1.2e+02 Score=25.31 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=33.3
Q ss_pred CceEEEEEE-ecCCCChHHHHHHHHHccCCceEEEEEeeec---CCeEEEEEEEEe
Q 042465 238 ERGFYLKLV-SNKGEGVAASLYEALESLTSFNVQNSNLVAE---SERFVLTFTLNA 289 (324)
Q Consensus 238 e~~v~I~I~-C~~r~glL~~Il~aLesl~gL~V~sa~vst~---~~~~~~t~~vkv 289 (324)
.+...|.|. -+.++|.+.+|++.|.+. |+.|.-...++. ++...++|++..
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~-~InId~i~~s~~~~~~~~~~isf~v~~ 67 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADA-EINIDMVLQNVSSVEDGTTDITFTCPR 67 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHT-TCCCCEEEECCCCTTTCEEEEEEEEEH
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHc-CCCEEEEEcCCCCCCCCceEEEEEEcc
Confidence 455677774 477899999999999999 766554433322 223444565553
No 51
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=42.13 E-value=1.4e+02 Score=24.38 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=26.9
Q ss_pred CceEEEEEEe-cCCCChHHHHHHHHHccCCceEEEEE
Q 042465 238 ERGFYLKLVS-NKGEGVAASLYEALESLTSFNVQNSN 273 (324)
Q Consensus 238 e~~v~I~I~C-~~r~glL~~Il~aLesl~gL~V~sa~ 273 (324)
.+-..|.|.. +.++|.+.+|+++|.+. |+.|.-..
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~-~InVd~I~ 49 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAER-GIAVDMII 49 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHH-TCCCSCEE
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHc-CCcEEEEE
Confidence 4556677664 56799999999999999 78776544
No 52
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=39.18 E-value=27 Score=24.90 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 042465 175 SYVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 175 ~YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
.|+..|+.+++.|+.++..|...
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776666543
No 53
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.98 E-value=31 Score=24.26 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 042465 174 VSYVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 174 i~YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
-+|+..|+.+++.|+.++..|...
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~ 44 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAST 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777766544
No 54
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=36.84 E-value=1.3e+02 Score=27.65 Aligned_cols=61 Identities=8% Similarity=0.061 Sum_probs=44.4
Q ss_pred EEEEecCCCChHHHHHHHHHccCCceEEEEEeeecCC-eEEEEEEEEecCCccccCChHHHHHHHHH
Q 042465 243 LKLVSNKGEGVAASLYEALESLTSFNVQNSNLVAESE-RFVLTFTLNAKDNDQISMQLPNLKLWVAN 308 (324)
Q Consensus 243 I~I~C~~r~glL~~Il~aLesl~gL~V~sa~vst~~~-~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~ 308 (324)
|-+..+.++|.|.++|..+... |++......-...+ ..-|.|.+.+.+. .+.+.++.++..
T Consensus 203 l~f~~~~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfvD~eg~----~~d~~v~~aL~~ 264 (283)
T 2qmx_A 203 IVFALPNEQGSLFRALATFALR-GIDLTKIESRPSRKKAFEYLFYADFIGH----REDQNVHNALEN 264 (283)
T ss_dssp EEEEEECCTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTEEEEEEEEESC----TTSHHHHHHHHH
T ss_pred EEEEcCCCCchHHHHHHHHHHc-CCCeeEEEeeEcCCCCcceEEEEEEecC----CCcHHHHHHHHH
Confidence 3334468899999999999999 89999888665554 3467788888654 334666666654
No 55
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=36.51 E-value=1.1e+02 Score=25.12 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=28.2
Q ss_pred CceEEEEEEe-cCCCChHHHHHHHHHccCCceEEEEE
Q 042465 238 ERGFYLKLVS-NKGEGVAASLYEALESLTSFNVQNSN 273 (324)
Q Consensus 238 e~~v~I~I~C-~~r~glL~~Il~aLesl~gL~V~sa~ 273 (324)
.+...|.|.. +.++|.+.+|+++|.+. |+.|....
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~-~Invd~i~ 58 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADA-NIEVDMII 58 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTT-TCCCCCEE
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHc-CCeEEEEE
Confidence 4557777773 77899999999999999 78876654
No 56
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.20 E-value=37 Score=23.75 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 042465 175 SYVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 175 ~YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
.|+..|+.+++.|+.++..|...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~ 44 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777766666544
No 57
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=33.59 E-value=36 Score=19.75 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 042465 168 SLVGDAVSYVQELQTTAKN 186 (324)
Q Consensus 168 sIL~~Ai~YIk~Lq~~~~~ 186 (324)
+-|-+|-.|+.+|+++++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4577889999999887653
No 58
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=33.38 E-value=40 Score=24.69 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042465 175 SYVQELQTTAKNLKAEIAD 193 (324)
Q Consensus 175 ~YIk~Lq~~~~~L~~~~~~ 193 (324)
.||+.|+.++..|+.....
T Consensus 29 ~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544433
No 59
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=33.37 E-value=41 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042465 177 VQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 177 Ik~Lq~~~~~L~~~~~~l~~~ 197 (324)
+.+|+.++++|..++..|+..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~e 23 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNK 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHH
Confidence 456666666666666555543
No 60
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=33.30 E-value=1.7e+02 Score=27.36 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=54.8
Q ss_pred eEEEEEEecC-CCChHHHHHHHHHccCCceEEEEEeeecCCeEEEEEEEEecCCccccCChHHHHHHHHHHHhhCCCccc
Q 042465 240 GFYLKLVSNK-GEGVAASLYEALESLTSFNVQNSNLVAESERFVLTFTLNAKDNDQISMQLPNLKLWVANALLNQGFQVL 318 (324)
Q Consensus 240 ~v~I~I~C~~-r~glL~~Il~aLesl~gL~V~sa~vst~~~~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~Al~n~g~~~~ 318 (324)
.+.+.+.... +++++.+|...|.+. |+++......+....+.+.|++.+.. .+...++..+.......+.+++
T Consensus 101 ~~~~~llg~~~~~~~~~~i~~~l~~~-~~Ni~~l~~~~~~~~~~~~~~v~~~~-----~~~~~l~~~l~~l~~~~~vD~~ 174 (415)
T 3p96_A 101 THTIFVLGRPITAAAFGAVAREVAAL-GVNIDLIRGVSDYPVIGLELRVSVPP-----GADEALRTALNRVSSEEHVDVA 174 (415)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHT-TCEEEEEEEEESSSSEEEEEEEECCT-----TCHHHHHHHHHHHHHHHTCEEE
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHHHc-CCCccceeeccCCCceEEEEEeeCCC-----CCHHHHHHHHHHHhhhcCcCcc
Confidence 4566777777 799999999999998 89988777665444555556665432 4688899998888877788765
Q ss_pred c
Q 042465 319 I 319 (324)
Q Consensus 319 ~ 319 (324)
-
T Consensus 175 v 175 (415)
T 3p96_A 175 V 175 (415)
T ss_dssp E
T ss_pred c
Confidence 3
No 61
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.29 E-value=56 Score=20.02 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 042465 176 YVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 176 YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
-++.|+.-+++|+++...|+.+
T Consensus 7 ~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777766644
No 62
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.42 E-value=51 Score=22.89 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042465 169 LVGDAVSYVQELQTTAKNLKAEIADLEA 196 (324)
Q Consensus 169 IL~~Ai~YIk~Lq~~~~~L~~~~~~l~~ 196 (324)
.|+..++-+..|..++++|+++++.|+.
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3777788888888888888888877754
No 63
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=28.59 E-value=62 Score=28.07 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042465 169 LVGDAVSYVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 169 IL~~Ai~YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
+|.-+++-+..|+.+++.|+++++.|+..
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788999999999999999998764
No 64
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.17 E-value=20 Score=25.94 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042465 174 VSYVQELQTTAKNLKAEIADLEA 196 (324)
Q Consensus 174 i~YIk~Lq~~~~~L~~~~~~l~~ 196 (324)
-.||..|+.+++.|+..+..|..
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~~ 79 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVHS 79 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 37888998888888877766543
No 65
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=27.74 E-value=48 Score=19.36 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042465 176 YVQELQTTAKNLKAEIADLE 195 (324)
Q Consensus 176 YIk~Lq~~~~~L~~~~~~l~ 195 (324)
|+-+|+.++-+|+-+...|+
T Consensus 1 yvyqlkdevgelkgevralk 20 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRALK 20 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHHH
Confidence 44556666666665555554
No 66
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=27.72 E-value=1.9e+02 Score=26.26 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=43.5
Q ss_pred EEEEEe---cCCCChHHHHHHHHHccCCceEEEEEeeecCC-eEEEEEEEEecCCccccCChHHHHHHHHHH
Q 042465 242 YLKLVS---NKGEGVAASLYEALESLTSFNVQNSNLVAESE-RFVLTFTLNAKDNDQISMQLPNLKLWVANA 309 (324)
Q Consensus 242 ~I~I~C---~~r~glL~~Il~aLesl~gL~V~sa~vst~~~-~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~A 309 (324)
.|-+.. +.++|.|.++|..+... |++......-...+ ..-|.|.+.+. . ++.+.++.++...
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~e-~----~~d~~v~~aL~~L 253 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALF-NINLSWIESRPLKTQLGMYRFFVQAD-S----AITTDIKKVIAIL 253 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTCEEEEEEES-C----CSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHc-CCCeeEEEEeecCCCCccEEEEEEEe-c----CCcHHHHHHHHHH
Confidence 344555 67899999999999999 89998877655554 34577777776 3 2345666666543
No 67
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=27.50 E-value=1.7e+02 Score=23.97 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=27.8
Q ss_pred CceEEEEEEecC---CCChHHHHHHHHHccCCceEEEEE
Q 042465 238 ERGFYLKLVSNK---GEGVAASLYEALESLTSFNVQNSN 273 (324)
Q Consensus 238 e~~v~I~I~C~~---r~glL~~Il~aLesl~gL~V~sa~ 273 (324)
.+-..|.|.... .+|++.+++++|.+. |+.|....
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~-~InI~~is 138 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEE-GINIQMIS 138 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHT-TCCCCEEE
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHC-CCcEEEEE
Confidence 445667777654 799999999999999 79997754
No 68
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=27.20 E-value=62 Score=20.29 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042465 177 VQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 177 Ik~Lq~~~~~L~~~~~~l~~~ 197 (324)
+.+|+.++++|-.++..|+..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~E 22 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENX 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHH
Confidence 345666666666555555543
No 69
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.00 E-value=80 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 042465 174 VSYVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 174 i~YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
-.||+.|+.+++.|+..+..+...
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~~ 70 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGVD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 359999999999999998877543
No 70
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=26.58 E-value=2.2e+02 Score=26.44 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=44.1
Q ss_pred EEEEEec-CCCChHHHHHHHHHccCCceEEEEEeeecCC-eEEEEEEEEecCCccccCChHHHHHHHHHH
Q 042465 242 YLKLVSN-KGEGVAASLYEALESLTSFNVQNSNLVAESE-RFVLTFTLNAKDNDQISMQLPNLKLWVANA 309 (324)
Q Consensus 242 ~I~I~C~-~r~glL~~Il~aLesl~gL~V~sa~vst~~~-~~~~t~~vkv~~~~~~~~~~~~Lk~~v~~A 309 (324)
-|-+..+ .++|.|.++|..|... |++......-...+ ..-|.|.+.+.+. ++.+.++.+|...
T Consensus 203 Sl~f~~~~~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~eg~----~~d~~v~~aL~~L 267 (313)
T 3mwb_A 203 TVVVPLPEDHPGALMEILDQFASR-GVNLSRIESRPTGQYLGHYFFSIDADGH----ATDSRVADALAGL 267 (313)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTSEEEEEEEESC----TTSHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHC-CccEEEEEEeecCCCCccEEEEEEEeCC----CCcHHHHHHHHHH
Confidence 3445554 7899999999999999 89988877655544 2356777777543 3456677766654
No 71
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.77 E-value=42 Score=21.09 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 042465 178 QELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 178 k~Lq~~~~~L~~~~~~l~~~ 197 (324)
.+|+.++++|-.++..|+..
T Consensus 3 ~QLE~kVEeLl~~n~~Le~E 22 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENE 22 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHH
Confidence 35566666665555555443
No 72
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.70 E-value=69 Score=20.10 Aligned_cols=21 Identities=10% Similarity=0.166 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042465 177 VQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 177 Ik~Lq~~~~~L~~~~~~l~~~ 197 (324)
+.+|+.++++|-.++..|+..
T Consensus 2 MnQLEdKVEell~~~~~le~E 22 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNE 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHH
Confidence 356666666666655555443
No 73
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=25.70 E-value=68 Score=20.24 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042465 177 VQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 177 Ik~Lq~~~~~L~~~~~~l~~~ 197 (324)
+.+|+.++++|-.++..|+..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 345666666665555555543
No 74
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=24.79 E-value=49 Score=21.18 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042465 178 QELQTTAKNLKAEIADLEA 196 (324)
Q Consensus 178 k~Lq~~~~~L~~~~~~l~~ 196 (324)
.+|+.++++|..++..|+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~ 22 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLEN 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHH
Confidence 4566666665555555544
No 75
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=24.58 E-value=3.9e+02 Score=24.92 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=42.7
Q ss_pred CCCChHHHHHHHHHccCCceEEEEEeeecCCe-EEEEEEEEecCCccccCChHHHHHHHHHH
Q 042465 249 KGEGVAASLYEALESLTSFNVQNSNLVAESER-FVLTFTLNAKDNDQISMQLPNLKLWVANA 309 (324)
Q Consensus 249 ~r~glL~~Il~aLesl~gL~V~sa~vst~~~~-~~~t~~vkv~~~~~~~~~~~~Lk~~v~~A 309 (324)
.++|.|.++|..+... |++......-...+. .-|.|.+.+.+. +..+.++.++...
T Consensus 217 ~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~eg~----~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TGPGVLANLLDVFRDA-GLNMTSFISRPIKGRTGTYSFIVTLDAA----PWEERFRDALVEI 273 (329)
T ss_dssp CSTTHHHHHHHHHHHT-TCCEEEEEEEEETTEEEEEEEEEEESSC----TTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHC-CcceEEEEeeECCCCCccEEEEEEEeCC----cCCHHHHHHHHHH
Confidence 4799999999999999 899988887666654 467788887553 3456777776654
No 76
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=23.51 E-value=81 Score=26.15 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCC----CCCCCcccHHHHHHHHHHHH
Q 042465 145 GKMKEKLYQLRALVPN----ITKMDKASLVGDAVSYVQEL 180 (324)
Q Consensus 145 ~~in~~~~~LrslvP~----~~K~dKasIL~~Ai~YIk~L 180 (324)
--|.-.|..|..++|. ..++-|-.||..|.++++.|
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 3567889999999995 36788999999999998866
No 77
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.09 E-value=1.7e+02 Score=22.31 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=30.1
Q ss_pred ceEEEEEEec------CCCChHHHHHHHHHccCCceEEEEEeeecCCeEEEEE
Q 042465 239 RGFYLKLVSN------KGEGVAASLYEALESLTSFNVQNSNLVAESERFVLTF 285 (324)
Q Consensus 239 ~~v~I~I~C~------~r~glL~~Il~aLesl~gL~V~sa~vst~~~~~~~t~ 285 (324)
..++|.++.. -...++..|++.|..+ | +|+.+.+.. ++.+.+|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~-G-~Vi~vr~~~--d~~fVtF 56 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASF-G-EVILIRFVE--DKMWVTF 56 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT-C-CEEEEEECS--SSEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhC-C-CeEEEEEec--CCEEEEE
Confidence 4566777542 1245889999999999 8 899999875 4443333
No 78
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.00 E-value=83 Score=19.84 Aligned_cols=21 Identities=5% Similarity=0.167 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042465 177 VQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 177 Ik~Lq~~~~~L~~~~~~l~~~ 197 (324)
+.+|+.++++|-.++..|+..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~E 23 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 345666666665555555443
No 79
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=22.41 E-value=76 Score=20.50 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042465 173 AVSYVQELQTTAKNLKAEIA 192 (324)
Q Consensus 173 Ai~YIk~Lq~~~~~L~~~~~ 192 (324)
-|+-|+.|+++.+.|+.++.
T Consensus 18 yidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 18 YIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888887764
No 80
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=21.57 E-value=40 Score=27.02 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHHHhhCCCccc
Q 042465 298 QLPNLKLWVANALLNQGFQVL 318 (324)
Q Consensus 298 ~~~~Lk~~v~~Al~n~g~~~~ 318 (324)
+.+.|++++..|+.+.||+|+
T Consensus 98 s~e~L~~kL~~AI~~~gfGfv 118 (118)
T 3pt3_A 98 SKQILKQKLLLAIKTKNFGFV 118 (118)
T ss_dssp SHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHhCCcCCC
Confidence 689999999999999999985
No 81
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.29 E-value=79 Score=22.88 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 042465 174 VSYVQELQTTAKNLKAEIADLEA 196 (324)
Q Consensus 174 i~YIk~Lq~~~~~L~~~~~~l~~ 196 (324)
-.||..|+.+++.|+..+..|..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 36999999999999999888743
No 82
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=20.93 E-value=1.1e+02 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042465 169 LVGDAVSYVQELQTTAKNLKAEIADLEAS 197 (324)
Q Consensus 169 IL~~Ai~YIk~Lq~~~~~L~~~~~~l~~~ 197 (324)
++.-+++-|..||.++..|++++++|...
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667999999999999999998653
No 83
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.24 E-value=1.1e+02 Score=18.62 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 042465 177 VQELQTTAKNLKAEIADLE 195 (324)
Q Consensus 177 Ik~Lq~~~~~L~~~~~~l~ 195 (324)
|.-|++++..|++++..|+
T Consensus 4 iaalkqeiaalkkeiaalk 22 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666554
No 84
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.03 E-value=82 Score=19.94 Aligned_cols=16 Identities=38% Similarity=0.297 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 042465 180 LQTTAKNLKAEIADLE 195 (324)
Q Consensus 180 Lq~~~~~L~~~~~~l~ 195 (324)
.|+.+.+|++++..|+
T Consensus 12 ~qqDIddlkrQN~~Le 27 (34)
T 1a93_B 12 HQQDIDDLKRQNALLE 27 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHH
Confidence 3444444444444443
No 85
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=20.01 E-value=70 Score=20.18 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042465 178 QELQTTAKNLKAEIADLEA 196 (324)
Q Consensus 178 k~Lq~~~~~L~~~~~~l~~ 196 (324)
.+|+.++++|-.++..|+.
T Consensus 4 nQLEdkVEeLl~~~~~Le~ 22 (34)
T 2hy6_A 4 KQLADAVEELASANYHLAN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHH
Confidence 4566666666555555544
Done!