Query 042466
Match_columns 178
No_of_seqs 179 out of 1396
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 9.7E-60 3.3E-64 368.1 11.6 172 1-177 1-173 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 3.3E-58 1.1E-62 365.8 12.5 170 5-176 30-202 (204)
3 3h16_A TIR protein; bacteria T 100.0 2.8E-36 9.5E-41 230.5 2.6 118 6-124 16-134 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 5.6E-31 1.9E-35 200.0 -1.0 137 5-143 5-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 7.5E-27 2.5E-31 177.5 1.3 104 7-112 2-111 (149)
6 2js7_A Myeloid differentiation 99.9 4.2E-26 1.4E-30 175.4 3.8 102 5-108 11-117 (160)
7 2j67_A TOLL like receptor 10; 99.9 6.1E-26 2.1E-30 177.4 3.6 105 5-111 30-140 (178)
8 1t3g_A X-linked interleukin-1 99.9 4E-25 1.4E-29 169.8 6.3 101 9-109 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.7 9.2E-19 3.1E-23 162.7 6.6 102 6-109 666-775 (844)
10 1eiw_A Hypothetical protein MT 98.0 3.8E-06 1.3E-10 60.3 3.6 72 9-103 3-74 (111)
11 3hyn_A Putative signal transdu 96.7 0.01 3.5E-07 45.9 9.2 105 10-119 5-133 (189)
12 2f62_A Nucleoside 2-deoxyribos 92.1 1.7 5.8E-05 32.5 10.1 85 7-91 7-97 (161)
13 3hjn_A DTMP kinase, thymidylat 86.8 4.2 0.00014 30.8 8.8 31 14-44 2-34 (197)
14 2khz_A C-MYC-responsive protei 79.9 12 0.00041 27.6 8.6 80 8-91 9-102 (165)
15 4fyk_A Deoxyribonucleoside 5'- 78.6 12 0.0004 27.7 8.0 76 12-91 4-93 (152)
16 3ehd_A Uncharacterized conserv 74.4 12 0.00042 27.8 7.2 74 24-102 19-103 (162)
17 2yvq_A Carbamoyl-phosphate syn 72.2 9.4 0.00032 27.5 6.0 61 13-75 27-106 (143)
18 4hlc_A DTMP kinase, thymidylat 50.0 78 0.0027 23.7 9.5 30 13-43 3-34 (205)
19 3dt5_A Uncharacterized protein 46.4 10 0.00035 26.1 2.0 39 74-112 36-78 (135)
20 3czq_A Putative polyphosphate 45.8 28 0.00094 28.6 4.9 99 12-111 86-204 (304)
21 1sc3_B Interleukin-1 beta conv 44.7 6.4 0.00022 26.2 0.7 25 14-38 21-45 (88)
22 1s2d_A Purine trans deoxyribos 44.4 92 0.0031 22.9 8.3 84 12-102 9-115 (167)
23 2ql9_B Caspase-7; cysteine pro 40.1 7.4 0.00025 26.2 0.5 24 15-38 24-47 (97)
24 2jug_A TUBC protein; docking d 39.5 17 0.00059 23.2 2.2 39 27-65 7-49 (78)
25 1byr_A Protein (endonuclease); 39.3 49 0.0017 23.0 4.9 12 26-37 15-26 (155)
26 1qtn_B Caspase-8; apoptosis, d 38.8 7 0.00024 26.3 0.2 28 10-37 12-48 (95)
27 2ys3_A UNC-112-related protein 38.4 55 0.0019 23.6 5.0 37 131-169 95-131 (137)
28 2dko_B Caspase-3; low barrier 36.7 9 0.00031 26.1 0.5 29 10-38 16-53 (103)
29 1pyo_B Caspase-2; apoptosis, c 35.7 9.6 0.00033 26.1 0.5 24 15-38 28-51 (105)
30 2xzd_B Caspase-3; hydrolase-pr 30.9 14 0.00048 25.9 0.7 25 14-38 28-52 (118)
31 2i2x_B MTAC, methyltransferase 30.2 1.7E+02 0.0057 22.7 7.1 86 12-107 125-212 (258)
32 2d00_A V-type ATP synthase sub 30.1 1.3E+02 0.0044 20.4 6.7 43 32-77 16-58 (109)
33 1bax_A M-PMV MA, M-PMV matrix 29.7 27 0.00093 23.7 1.9 19 24-42 9-27 (94)
34 1wu7_A Histidyl-tRNA synthetas 29.6 81 0.0028 26.4 5.4 58 9-70 331-389 (434)
35 4hde_A SCO1/SENC family lipopr 29.2 65 0.0022 23.0 4.2 56 49-109 21-79 (170)
36 4a6h_A Phosphatidylinositol 4, 28.4 30 0.001 23.9 2.1 19 131-149 101-119 (120)
37 4h3d_A 3-dehydroquinate dehydr 28.0 67 0.0023 25.3 4.4 67 30-97 104-170 (258)
38 3aon_B V-type sodium ATPase su 27.8 67 0.0023 22.2 3.9 42 32-77 15-56 (115)
39 1v95_A Nuclear receptor coacti 27.4 1.7E+02 0.0057 20.8 7.2 54 14-70 13-67 (130)
40 1v5p_A Pleckstrin homology dom 26.9 36 0.0012 23.6 2.3 20 131-150 103-122 (126)
41 3rjm_B Caspase-2; caspase-2, c 26.4 16 0.00056 25.5 0.4 29 10-38 15-52 (117)
42 1f8y_A Nucleoside 2-deoxyribos 26.2 1.7E+02 0.0058 21.1 6.0 84 12-102 5-112 (157)
43 1evl_A Threonyl-tRNA synthetas 25.8 1.3E+02 0.0046 24.7 6.1 48 9-60 297-344 (401)
44 3czp_A Putative polyphosphate 25.0 1.2E+02 0.0041 26.4 5.7 102 10-112 41-162 (500)
45 2il1_A RAB12; G-protein, GDP, 25.0 1.8E+02 0.0063 20.4 8.1 27 49-75 83-110 (192)
46 2d9v_A Pleckstrin homology dom 24.4 48 0.0016 22.7 2.6 22 131-152 97-118 (130)
47 2yry_A Pleckstrin homology dom 24.1 40 0.0014 22.3 2.1 19 131-149 103-121 (122)
48 3ftb_A Histidinol-phosphate am 24.1 1.7E+02 0.0058 22.7 6.2 59 33-93 114-174 (361)
49 3net_A Histidyl-tRNA synthetas 23.9 1.2E+02 0.0041 25.8 5.5 61 8-72 369-429 (465)
50 2p5s_A RAS and EF-hand domain 23.7 2E+02 0.0068 20.4 6.1 61 49-112 85-146 (199)
51 2h1v_A Ferrochelatase; rossman 23.6 1.5E+02 0.0053 23.7 5.9 63 26-90 63-134 (310)
52 4a8j_B Elongator complex prote 23.1 1.4E+02 0.0049 24.0 5.4 69 38-110 68-142 (270)
53 2efe_B Small GTP-binding prote 22.8 1.9E+02 0.0064 19.8 6.7 61 49-112 69-130 (181)
54 2i5f_A Pleckstrin; PH domain, 22.1 49 0.0017 21.3 2.2 17 131-147 92-108 (109)
55 4g84_A Histidine--tRNA ligase, 22.0 2.2E+02 0.0075 23.7 6.8 49 9-60 365-413 (464)
56 4bbk_A Kindlin-1, fermitin fam 21.8 1.7E+02 0.0057 21.8 5.2 40 131-172 112-151 (165)
57 1ug7_A 2610208M17RIK protein; 21.7 30 0.001 24.8 1.0 18 135-152 15-32 (128)
58 2cof_A Protein KIAA1914; PH do 21.7 50 0.0017 21.5 2.1 19 131-149 84-102 (107)
59 3lc0_A Histidyl-tRNA synthetas 21.1 2E+02 0.0069 24.4 6.4 59 9-71 360-418 (456)
60 1htt_A Histidyl-tRNA synthetas 21.1 84 0.0029 26.1 3.9 58 8-69 325-385 (423)
61 1dj7_A Ferredoxin thioredoxin 21.1 1.9E+02 0.0066 20.2 5.1 35 134-170 9-43 (117)
62 1dro_A Beta-spectrin; cytoskel 20.7 56 0.0019 21.9 2.3 20 131-150 102-121 (122)
63 2i4r_A V-type ATP synthase sub 20.4 75 0.0026 21.5 2.8 44 32-77 22-65 (102)
64 2fcj_A Small toprim domain pro 20.3 63 0.0021 22.7 2.5 73 15-91 30-103 (119)
65 1egw_A MADS box transcription 20.3 39 0.0013 21.9 1.3 33 60-92 36-68 (77)
66 2coc_A FYVE, rhogef and PH dom 20.2 57 0.0019 22.2 2.2 18 131-148 89-106 (112)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=9.7e-60 Score=368.11 Aligned_cols=172 Identities=44% Similarity=0.699 Sum_probs=145.0
Q ss_pred CCCCCCCCCcccEEEecccccCcccHHHHHHHHhhcCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCCh
Q 042466 1 MASSYRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSR 79 (178)
Q Consensus 1 m~~~~~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~ 79 (178)
|+ ||.+++|||||||||+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|+
T Consensus 1 ms--ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~ 78 (176)
T 3jrn_A 1 MS--SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASS 78 (176)
T ss_dssp --------CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCH
T ss_pred CC--CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCCh
Confidence 66 67889999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhccceeeeEEeecCccccccccCchHHHHHHHHHhhhhchhHHHHHHHHHHHhhhhcCcccCCCch
Q 042466 80 WCLDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIRI 159 (178)
Q Consensus 80 wc~~EL~~i~~~~~~~~~~viPVfy~v~psdV~~~~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~~~~ 159 (178)
||++||++|++|.++++++||||||+|+|++||+|+|.||++|.+|+++ .+++++++||.||++||+++||++. ..+
T Consensus 79 WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~-~~e 155 (176)
T 3jrn_A 79 WCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG-DDD 155 (176)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-SCH
T ss_pred hHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC-CCH
Confidence 9999999999999889999999999999999999999999999999987 5689999999999999999999995 458
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 042466 160 NNKSKRILQYISNKISGA 177 (178)
Q Consensus 160 ~~~i~~Iv~~i~~~l~~~ 177 (178)
.++|++||++|+++|+++
T Consensus 156 ~~~i~~Iv~~v~~~l~~~ 173 (176)
T 3jrn_A 156 SKLVDKIANEISNKKTIY 173 (176)
T ss_dssp HHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999999864
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=3.3e-58 Score=365.79 Aligned_cols=170 Identities=41% Similarity=0.711 Sum_probs=158.6
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHhhcCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHH
Q 042466 5 YRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLD 83 (178)
Q Consensus 5 ~~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~ 83 (178)
++++++|||||||||+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|||||+||++|+||++
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 56789999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh-ccceeeeEEeecCccccccccCchHHHHHHHHHhhhhchhHHHHHHHHHHHhhhhcCcccCCCc-hHH
Q 042466 84 ELVKILECKKE-YAQILIPVFYRVDPSDVRNQTGSFGDSFSKLEERFKENSKKLQTWRKALKEAASLSGFPSQSIR-INN 161 (178)
Q Consensus 84 EL~~i~~~~~~-~~~~viPVfy~v~psdV~~~~g~f~~~f~~~~~~~~~~~~~v~~W~~AL~~v~~~~G~~~~~~~-~~~ 161 (178)
||++|++|+++ ++++||||||+|+|++||+|+|.||++|.+|++++. ++++++||.||++||+++||++.+.. +.+
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~ 187 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGA 187 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCHHH
T ss_pred HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCHHH
Confidence 99999999875 578999999999999999999999999999998874 68999999999999999999998875 568
Q ss_pred HHHHHHHHHHHhhcC
Q 042466 162 KSKRILQYISNKISG 176 (178)
Q Consensus 162 ~i~~Iv~~i~~~l~~ 176 (178)
+|++||++|++||++
T Consensus 188 ~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 188 IADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999976
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=2.8e-36 Score=230.49 Aligned_cols=118 Identities=19% Similarity=0.404 Sum_probs=110.6
Q ss_pred CCCCcccEEEecccccCcccHHHHHHHHhhcCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHHH
Q 042466 6 RNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDE 84 (178)
Q Consensus 6 ~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~E 84 (178)
++.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|++|++|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4568899999999999 56899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccceeeeEEeecCccccccccCchHHHHHH
Q 042466 85 LVKILECKKEYAQILIPVFYRVDPSDVRNQTGSFGDSFSK 124 (178)
Q Consensus 85 L~~i~~~~~~~~~~viPVfy~v~psdV~~~~g~f~~~f~~ 124 (178)
|..++++..+++.+||||||+++|++|++|.|.|++.|..
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence 9999998877888999999999999999999999988753
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=5.6e-31 Score=199.95 Aligned_cols=137 Identities=18% Similarity=0.276 Sum_probs=94.5
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHhhc--CCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhh
Q 042466 5 YRNNKKYDVFVSFRGEDTRDNFTSHLYSALSR--QNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWC 81 (178)
Q Consensus 5 ~~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~--~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc 81 (178)
+..++.|||||||+++|+ .||.+|..+|++ .|+++|+++ ++.+|+.+.++|.++|++|+++|+|+|+||++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 456778999999999996 689999999998 599999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccceeeeEEeecCccccccccCch-HHHHHHHHHhhhhchhHHHHHHHHH
Q 042466 82 LDELVKILECKKEYAQILIPVFYRVDPSDVRNQTGSF-GDSFSKLEERFKENSKKLQTWRKAL 143 (178)
Q Consensus 82 ~~EL~~i~~~~~~~~~~viPVfy~v~psdV~~~~g~f-~~~f~~~~~~~~~~~~~v~~W~~AL 143 (178)
+.|+..++.+......+||||||+++++++....+.+ ...+..+...+....+.|.+|++||
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 9999999998633344778999999877664433211 0111112233333357788998775
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.92 E-value=7.5e-27 Score=177.54 Aligned_cols=104 Identities=21% Similarity=0.353 Sum_probs=92.7
Q ss_pred CCCcccEEEecccccCcccHHHH-HHHHhhcC--CcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhH
Q 042466 7 NNKKYDVFVSFRGEDTRDNFTSH-LYSALSRQ--NIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCL 82 (178)
Q Consensus 7 ~~~~ydVFIS~~~~D~~~~fv~~-L~~aL~~~--gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~ 82 (178)
.++.|||||||+++|+ .||.+ |..+|++. |+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999996 79996 99999986 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhhccceeeeEEee-cCccccc
Q 042466 83 DELVKILEC-KKEYAQILIPVFYR-VDPSDVR 112 (178)
Q Consensus 83 ~EL~~i~~~-~~~~~~~viPVfy~-v~psdV~ 112 (178)
.|+..++.+ ....+.+||||||+ +.+..+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999998853 45567899999994 5554443
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.92 E-value=4.2e-26 Score=175.42 Aligned_cols=102 Identities=19% Similarity=0.286 Sum_probs=91.9
Q ss_pred CCCCCcccEEEecccccCcccHHHHHHHHhhcC--CcEEEecC-CCCCcccchHHHHHHHH-hcceeeEEecCCCCCChh
Q 042466 5 YRNNKKYDVFVSFRGEDTRDNFTSHLYSALSRQ--NIQTFIDD-QLNRGDEISESLVNAIE-ASAISVIIFSESYPSSRW 80 (178)
Q Consensus 5 ~~~~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~--gi~vf~d~-~~~~G~~i~~~i~~aI~-~S~~~Ivv~S~~y~~S~w 80 (178)
.+.++.|||||||+++| ..||.+|..+|++. |+++|+++ ++.+|+.+.++|.++|+ +|+.+|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 34578899999999999 48999999999984 69999999 99999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHhh-hhccceeeeEEeecCc
Q 042466 81 CLDELVKILECK-KEYAQILIPVFYRVDP 108 (178)
Q Consensus 81 c~~EL~~i~~~~-~~~~~~viPVfy~v~p 108 (178)
|+.|+..++++. .+.+.+||||||+.-+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999999875 4556799999997654
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.91 E-value=6.1e-26 Score=177.40 Aligned_cols=105 Identities=21% Similarity=0.396 Sum_probs=88.8
Q ss_pred CCCCCcccEEEecccccCcccHHHH-HHHHhhc--CCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCChh
Q 042466 5 YRNNKKYDVFVSFRGEDTRDNFTSH-LYSALSR--QNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSSRW 80 (178)
Q Consensus 5 ~~~~~~ydVFIS~~~~D~~~~fv~~-L~~aL~~--~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~w 80 (178)
...++.|||||||+++|+ .||.. |..+|++ .|+++|+|+ ++.+|+.+.++|.++|++|+.+|+|+|++|++|+|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456789999999999995 89975 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh-hhhccceeeeEEee-cCcccc
Q 042466 81 CLDELVKILEC-KKEYAQILIPVFYR-VDPSDV 111 (178)
Q Consensus 81 c~~EL~~i~~~-~~~~~~~viPVfy~-v~psdV 111 (178)
|+.|+..++.+ .++++.+||||||+ +.+.++
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~l 140 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYCI 140 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCGGGS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCChHHC
Confidence 99999999865 35567799999996 444433
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.91 E-value=4e-25 Score=169.83 Aligned_cols=101 Identities=20% Similarity=0.300 Sum_probs=89.7
Q ss_pred CcccEEEecccccC---------cccHHHHHHH-Hhh-cCCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCC
Q 042466 9 KKYDVFVSFRGEDT---------RDNFTSHLYS-ALS-RQNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYP 76 (178)
Q Consensus 9 ~~ydVFIS~~~~D~---------~~~fv~~L~~-aL~-~~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~ 76 (178)
+.|||||||+++|+ +..||.+|.. .|+ +.|+++|+++ ++.+|+.+.++|.++|++|+.+|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 3679988665 699 7999999999 9999999999999999999999999999997
Q ss_pred -CChhhHHHHHHHHHhh-hhccceeeeEEeecCcc
Q 042466 77 -SSRWCLDELVKILECK-KEYAQILIPVFYRVDPS 109 (178)
Q Consensus 77 -~S~wc~~EL~~i~~~~-~~~~~~viPVfy~v~ps 109 (178)
.|.||+.|+..++.+. .+++..||||+|+-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999875 56678999999875543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=9.2e-19 Score=162.71 Aligned_cols=102 Identities=19% Similarity=0.317 Sum_probs=91.4
Q ss_pred CCCCcccEEEecccccCcccHH-HHHHHHhhc-----CCcEEEecC-CCCCcccchHHHHHHHHhcceeeEEecCCCCCC
Q 042466 6 RNNKKYDVFVSFRGEDTRDNFT-SHLYSALSR-----QNIQTFIDD-QLNRGDEISESLVNAIEASAISVIIFSESYPSS 78 (178)
Q Consensus 6 ~~~~~ydVFIS~~~~D~~~~fv-~~L~~aL~~-----~gi~vf~d~-~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S 78 (178)
...+.|||||||+++|. .|| ..|...|+. .|+++|+++ ++.||+.+.++|.++|++||.+|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 45789999999999995 788 679999985 589999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhh-hhccceeeeEEeecCcc
Q 042466 79 RWCLDELVKILECK-KEYAQILIPVFYRVDPS 109 (178)
Q Consensus 79 ~wc~~EL~~i~~~~-~~~~~~viPVfy~v~ps 109 (178)
+||..|+..++.+. ++.+.+||||||+..|.
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999998764 56778999999975543
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.00 E-value=3.8e-06 Score=60.31 Aligned_cols=72 Identities=7% Similarity=0.013 Sum_probs=52.2
Q ss_pred CcccEEEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHH
Q 042466 9 KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKI 88 (178)
Q Consensus 9 ~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i 88 (178)
.+|.+||||+.+| . ...|...|.+.|+..- | +.|+.|.+.||+.+++..+|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 5799999999988 2 3344444434444322 1 568899999999999999999999998776
Q ss_pred HHhhhhccceeeeEE
Q 042466 89 LECKKEYAQILIPVF 103 (178)
Q Consensus 89 ~~~~~~~~~~viPVf 103 (178)
.+ .+..|+-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 43 455666664
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.74 E-value=0.01 Score=45.91 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=71.2
Q ss_pred cccEEEec--------------ccccCcccHHHHHHHHhhcCCcEEEecC-CCC-------C-cccchHHHHHHHHhcce
Q 042466 10 KYDVFVSF--------------RGEDTRDNFTSHLYSALSRQNIQTFIDD-QLN-------R-GDEISESLVNAIEASAI 66 (178)
Q Consensus 10 ~ydVFIS~--------------~~~D~~~~fv~~L~~aL~~~gi~vf~d~-~~~-------~-G~~i~~~i~~aI~~S~~ 66 (178)
+--+|++| ..+|. .+.+.|..--....+-.|.|. +.. . -..|...|.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44578888 34553 455666655555566445664 431 2 24578899999999999
Q ss_pred eeEEecCCCCCChhhHHHHHHHHHhhhhccceeeeEEeecC-ccccccccCchH
Q 042466 67 SVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVD-PSDVRNQTGSFG 119 (178)
Q Consensus 67 ~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPVfy~v~-psdV~~~~g~f~ 119 (178)
+|+++|++...|.|...|+..+++ +.+.+||-|.-+-. .+++..-.|.|.
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence 999999999999999999988872 23568887765422 345554445444
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=92.12 E-value=1.7 Score=32.46 Aligned_cols=85 Identities=9% Similarity=0.058 Sum_probs=57.4
Q ss_pred CCCcccEEEecc--cccCcccHHHHHHHHhhcCCcEEEecC--CCCCcccchHHHHHHHHhcceeeEEecC--CCCCChh
Q 042466 7 NNKKYDVFVSFR--GEDTRDNFTSHLYSALSRQNIQTFIDD--QLNRGDEISESLVNAIEASAISVIIFSE--SYPSSRW 80 (178)
Q Consensus 7 ~~~~ydVFIS~~--~~D~~~~fv~~L~~aL~~~gi~vf~d~--~~~~G~~i~~~i~~aI~~S~~~Ivv~S~--~y~~S~w 80 (178)
....-.+++.-. ..+....+...+.+.|++.|+.+|... .......+...-.++|++|++.|.+++| .-..++-
T Consensus 7 ~~~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~G 86 (161)
T 2f62_A 7 HHMRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCG 86 (161)
T ss_dssp CCCCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHH
T ss_pred hhhhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCc
Confidence 334445555531 222213688999999999999998754 2223344555557899999999999986 3334556
Q ss_pred hHHHHHHHHHh
Q 042466 81 CLDELVKILEC 91 (178)
Q Consensus 81 c~~EL~~i~~~ 91 (178)
+.-|+..+...
T Consensus 87 TafEiGyA~Al 97 (161)
T 2f62_A 87 TAFEVGCAAAL 97 (161)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 88899887654
No 13
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.77 E-value=4.2 Score=30.76 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=24.3
Q ss_pred EEecccccCc--ccHHHHHHHHhhcCCcEEEec
Q 042466 14 FVSFRGEDTR--DNFTSHLYSALSRQNIQTFID 44 (178)
Q Consensus 14 FIS~~~~D~~--~~fv~~L~~aL~~~gi~vf~d 44 (178)
||.+-|-|.. .+-+..|.+.|+++|+++..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 8888777742 467889999999999987543
No 14
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=79.88 E-value=12 Score=27.56 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=52.0
Q ss_pred CCcccEEEecccc--cCcccHHHHHHHHhhcCCcEEEecCCC-----CCcc-------cchHHHHHHHHhcceeeEEecC
Q 042466 8 NKKYDVFVSFRGE--DTRDNFTSHLYSALSRQNIQTFIDDQL-----NRGD-------EISESLVNAIEASAISVIIFSE 73 (178)
Q Consensus 8 ~~~ydVFIS~~~~--D~~~~fv~~L~~aL~~~gi~vf~d~~~-----~~G~-------~i~~~i~~aI~~S~~~Ivv~S~ 73 (178)
++...|||+=.-. .........+.+.|++.| .|+.+... ..|. .+...-.+.|++|++.|++++
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~- 86 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT- 86 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence 3345799983222 111225588999999999 88654421 1221 123344578999999999997
Q ss_pred CCCCChhhHHHHHHHHHh
Q 042466 74 SYPSSRWCLDELVKILEC 91 (178)
Q Consensus 74 ~y~~S~wc~~EL~~i~~~ 91 (178)
..+.-+.-|+..+...
T Consensus 87 --~~d~Gt~~EiGyA~al 102 (165)
T 2khz_A 87 --QPSLGVGYELGRAVAL 102 (165)
T ss_dssp --SCCHHHHHHHHHHHHT
T ss_pred --CCCCCHHHHHHHHHHC
Confidence 4567789999988653
No 15
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=78.57 E-value=12 Score=27.65 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=50.6
Q ss_pred cEEEe--cccccCcccHHHHHHHHhhcCCcEEEecC----CC-CCc-------ccchHHHHHHHHhcceeeEEecCCCCC
Q 042466 12 DVFVS--FRGEDTRDNFTSHLYSALSRQNIQTFIDD----QL-NRG-------DEISESLVNAIEASAISVIIFSESYPS 77 (178)
Q Consensus 12 dVFIS--~~~~D~~~~fv~~L~~aL~~~gi~vf~d~----~~-~~G-------~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 77 (178)
.|||+ +++-+....+...+.+.|++.| .|+-.. ++ ..| ..+.+.-.++|++|++.|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46765 3332223467799999999999 675432 11 122 2255566678999999999988 55
Q ss_pred ChhhHHHHHHHHHh
Q 042466 78 SRWCLDELVKILEC 91 (178)
Q Consensus 78 S~wc~~EL~~i~~~ 91 (178)
|.-..-|+..+...
T Consensus 80 d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 80 SLGVGYELGRAVAL 93 (152)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 77788899888654
No 16
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=74.35 E-value=12 Score=27.76 Aligned_cols=74 Identities=9% Similarity=0.088 Sum_probs=50.7
Q ss_pred ccHHHHHHHHhhcC--CcEEEecC-CC----CCcc----cchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHHHHhh
Q 042466 24 DNFTSHLYSALSRQ--NIQTFIDD-QL----NRGD----EISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECK 92 (178)
Q Consensus 24 ~~fv~~L~~aL~~~--gi~vf~d~-~~----~~G~----~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~ 92 (178)
..+...+.++|+++ |+.+|.-. +- .++. .+...-.++|++|++.|.++. ....++.+.-|+..+...
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~- 96 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK- 96 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC-
Confidence 35788899999875 89988754 21 1222 344444557999999999995 344678889999988753
Q ss_pred hhccceeeeE
Q 042466 93 KEYAQILIPV 102 (178)
Q Consensus 93 ~~~~~~viPV 102 (178)
+..|+.+
T Consensus 97 ---gkPVi~~ 103 (162)
T 3ehd_A 97 ---GIPVVAL 103 (162)
T ss_dssp ---TCCEEEE
T ss_pred ---CCEEEEE
Confidence 3355544
No 17
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=72.19 E-value=9.4 Score=27.50 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=38.9
Q ss_pred EEEecccccCcccHHHHHHHHhhcCCcEEEecC---------C--------CCCc-c-cchHHHHHHHHhcceeeEEecC
Q 042466 13 VFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDD---------Q--------LNRG-D-EISESLVNAIEASAISVIIFSE 73 (178)
Q Consensus 13 VFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~---------~--------~~~G-~-~i~~~i~~aI~~S~~~Ivv~S~ 73 (178)
||||.+..|. .-+-.+...|.+.|++++--. . +.-| + .-.++|.+.|++-.+-+||..|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999988773 345567778888888876221 0 1111 1 0004677888888888888877
Q ss_pred CC
Q 042466 74 SY 75 (178)
Q Consensus 74 ~y 75 (178)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 18
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=49.96 E-value=78 Score=23.68 Aligned_cols=30 Identities=17% Similarity=0.524 Sum_probs=21.6
Q ss_pred EEEecccccCc--ccHHHHHHHHhhcCCcEEEe
Q 042466 13 VFVSFRGEDTR--DNFTSHLYSALSRQNIQTFI 43 (178)
Q Consensus 13 VFIS~~~~D~~--~~fv~~L~~aL~~~gi~vf~ 43 (178)
-||.+-|-|.. .+.+..|.+.|. +|+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~ 34 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIM 34 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEE
Confidence 48999777742 467788999996 5777654
No 19
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=46.36 E-value=10 Score=26.10 Aligned_cols=39 Identities=18% Similarity=0.412 Sum_probs=26.3
Q ss_pred CCCCChhhHHHHHHHHHhhhh--c--cceeeeEEeecCccccc
Q 042466 74 SYPSSRWCLDELVKILECKKE--Y--AQILIPVFYRVDPSDVR 112 (178)
Q Consensus 74 ~y~~S~wc~~EL~~i~~~~~~--~--~~~viPVfy~v~psdV~ 112 (178)
.|+--....+|+..|+.|++- + -.+|+|.-++-....+.
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfkadkia 78 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIA 78 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCT
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchhc
Confidence 455556678999999999752 2 24788887665554443
No 20
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=45.79 E-value=28 Score=28.57 Aligned_cols=99 Identities=12% Similarity=0.222 Sum_probs=55.3
Q ss_pred cEEEecccccCc--ccHHHHHHHHhhcCCcEEEecC---CCCCcccchHHHHHHHHhcceeeEEecCCCCCCh-------
Q 042466 12 DVFVSFRGEDTR--DNFTSHLYSALSRQNIQTFIDD---QLNRGDEISESLVNAIEASAISVIIFSESYPSSR------- 79 (178)
Q Consensus 12 dVFIS~~~~D~~--~~fv~~L~~aL~~~gi~vf~d~---~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~------- 79 (178)
-|||-|-|-|.- .+-+.+|...|..+|++|..-. +-+.+..+...+..++-... -|+||-..+-++-
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~G-~IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAG-EFVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCTT-CEEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccCC-eEEEEECCcchHHHHHHHhc
Confidence 589999777752 4678999999999999876532 12223344334444443222 3445544433322
Q ss_pred hhHH-HHHHHHHh------h-hhccceeeeEEeecCcccc
Q 042466 80 WCLD-ELVKILEC------K-KEYAQILIPVFYRVDPSDV 111 (178)
Q Consensus 80 wc~~-EL~~i~~~------~-~~~~~~viPVfy~v~psdV 111 (178)
.|-. |....++. + -..+..++-+|++++|..-
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq 204 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ 204 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH
Confidence 1211 22222221 2 2245677888889998654
No 21
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=44.74 E-value=6.4 Score=26.20 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=18.2
Q ss_pred EEecccccCcccHHHHHHHHhhcCC
Q 042466 14 FVSFRGEDTRDNFTSHLYSALSRQN 38 (178)
Q Consensus 14 FIS~~~~D~~~~fv~~L~~aL~~~g 38 (178)
|.|||+......|+..|++.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 4556666666789999999987654
No 22
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=44.36 E-value=92 Score=22.88 Aligned_cols=84 Identities=10% Similarity=0.140 Sum_probs=55.6
Q ss_pred cEEEe---cccccCcccHHHHHHHHhhcC--CcEEEecC--CC--------CCc--------ccchHHHHHHHHhcceee
Q 042466 12 DVFVS---FRGEDTRDNFTSHLYSALSRQ--NIQTFIDD--QL--------NRG--------DEISESLVNAIEASAISV 68 (178)
Q Consensus 12 dVFIS---~~~~D~~~~fv~~L~~aL~~~--gi~vf~d~--~~--------~~G--------~~i~~~i~~aI~~S~~~I 68 (178)
.|||. |+..+ ..+...+.++|++. |+.+|.-. .. ..| ..|.+.-.++|++|++.|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 47775 33332 45889999999999 88888654 21 111 223445556899999999
Q ss_pred EEecCCCCCChhhHHHHHHHHHhhhhccceeeeE
Q 042466 69 IIFSESYPSSRWCLDELVKILECKKEYAQILIPV 102 (178)
Q Consensus 69 vv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPV 102 (178)
.++...-. ++-+.-|+..+... +..|+-+
T Consensus 87 A~ldg~~~-D~GTa~EiGyA~al----gKPVv~l 115 (167)
T 1s2d_A 87 FLYDMDQL-DDGSAFXIGFMRAM----HKPVILV 115 (167)
T ss_dssp EEEESSSC-CHHHHHHHHHHHHT----TCCEEEE
T ss_pred EECCCCCC-CCCceeehhhHhhC----CCeEEEE
Confidence 99987544 45678899887653 3355443
No 23
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=40.10 E-value=7.4 Score=26.19 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=15.8
Q ss_pred EecccccCcccHHHHHHHHhhcCC
Q 042466 15 VSFRGEDTRDNFTSHLYSALSRQN 38 (178)
Q Consensus 15 IS~~~~D~~~~fv~~L~~aL~~~g 38 (178)
.|||+.+.+..|+..|++.|++.|
T Consensus 24 ~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 24 YSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeecCCCCCeeHHHHHHHHHHhC
Confidence 344555555678888888887654
No 24
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=39.51 E-value=17 Score=23.24 Aligned_cols=39 Identities=8% Similarity=0.231 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCcEEEecC-CCC---CcccchHHHHHHHHhcc
Q 042466 27 TSHLYSALSRQNIQTFIDD-QLN---RGDEISESLVNAIEASA 65 (178)
Q Consensus 27 v~~L~~aL~~~gi~vf~d~-~~~---~G~~i~~~i~~aI~~S~ 65 (178)
+..|...|.++||..|.+. .+. |-..+.+++...+.+.+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 3467788999999999987 432 33456667777766543
No 25
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=39.34 E-value=49 Score=22.96 Aligned_cols=12 Identities=17% Similarity=0.110 Sum_probs=5.1
Q ss_pred HHHHHHHHhhcC
Q 042466 26 FTSHLYSALSRQ 37 (178)
Q Consensus 26 fv~~L~~aL~~~ 37 (178)
+...|.+.+.+.
T Consensus 15 ~~~~~~~~i~~A 26 (155)
T 1byr_A 15 ARVLVLSAIDSA 26 (155)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 26
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=38.76 E-value=7 Score=26.32 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=18.2
Q ss_pred cccEEEec---------ccccCcccHHHHHHHHhhcC
Q 042466 10 KYDVFVSF---------RGEDTRDNFTSHLYSALSRQ 37 (178)
Q Consensus 10 ~ydVFIS~---------~~~D~~~~fv~~L~~aL~~~ 37 (178)
.-|.+++| |+.+.+..|+..|++.|++.
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~ 48 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRER 48 (95)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHh
Confidence 45666665 44444566888888888664
No 27
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.42 E-value=55 Score=23.64 Aligned_cols=37 Identities=14% Similarity=0.329 Sum_probs=26.9
Q ss_pred hchhHHHHHHHHHHHhhhhcCcccCCCchHHHHHHHHHH
Q 042466 131 ENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQY 169 (178)
Q Consensus 131 ~~~~~v~~W~~AL~~v~~~~G~~~~~~~~~~~i~~Iv~~ 169 (178)
++++...+|.+||..++ .|-.+-+.....+|+.|...
T Consensus 95 dsEeqy~~WMaA~rlAs--kgktma~~sy~~ev~~i~~~ 131 (137)
T 2ys3_A 95 QDEQQYARWMAGCRLAS--KGRTMADSSYTSEVQAILAF 131 (137)
T ss_dssp SSHHHHHHHHHHHHHHH--TSCCTTSTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc--cCcchhhhhhHHHHHHHHHH
Confidence 35788899999999777 56666666666777777443
No 28
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=36.72 E-value=9 Score=26.15 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=18.6
Q ss_pred cccEEEec---------ccccCcccHHHHHHHHhhcCC
Q 042466 10 KYDVFVSF---------RGEDTRDNFTSHLYSALSRQN 38 (178)
Q Consensus 10 ~ydVFIS~---------~~~D~~~~fv~~L~~aL~~~g 38 (178)
.-|.+++| |+...+..|+..|++.|++.|
T Consensus 16 ~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 34666655 444445678888888887643
No 29
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=35.70 E-value=9.6 Score=26.11 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=16.5
Q ss_pred EecccccCcccHHHHHHHHhhcCC
Q 042466 15 VSFRGEDTRDNFTSHLYSALSRQN 38 (178)
Q Consensus 15 IS~~~~D~~~~fv~~L~~aL~~~g 38 (178)
.|||.......|+..|++.|++.+
T Consensus 28 ~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 28 AAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHC
Confidence 445555556678889998887643
No 30
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=30.88 E-value=14 Score=25.94 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=16.7
Q ss_pred EEecccccCcccHHHHHHHHhhcCC
Q 042466 14 FVSFRGEDTRDNFTSHLYSALSRQN 38 (178)
Q Consensus 14 FIS~~~~D~~~~fv~~L~~aL~~~g 38 (178)
|.|||.......|+..|++.|++.+
T Consensus 28 ~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 28 YYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEeCCCCCccHHHHHHHHHHhC
Confidence 3445555555678888988887643
No 31
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=30.18 E-value=1.7e+02 Score=22.73 Aligned_cols=86 Identities=9% Similarity=0.110 Sum_probs=51.8
Q ss_pred cEEEecccccCcccHH-HHHHHHhhcCCcEEE-ecCCCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHHH
Q 042466 12 DVFVSFRGEDTRDNFT-SHLYSALSRQNIQTF-IDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKIL 89 (178)
Q Consensus 12 dVFIS~~~~D~~~~fv-~~L~~aL~~~gi~vf-~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~ 89 (178)
-|.+.--+.|. +..- .-+...|+.+|+.|. +..+. -.+++.+++++.+.-+|.+|-....+ +..+...+
T Consensus 125 ~vlla~~~gd~-HdiG~~iva~~L~~~G~~Vi~LG~~v-----p~e~l~~~~~~~~~d~V~lS~l~~~~---~~~~~~~i 195 (258)
T 2i2x_B 125 TVVCHVAEGDV-HDIGKNIVTALLRANGYNVVDLGRDV-----PAEEVLAAVQKEKPIMLTGTALMTTT---MYAFKEVN 195 (258)
T ss_dssp EEEEEECTTCC-CCHHHHHHHHHHHHTTCEEEEEEEEC-----CSHHHHHHHHHHCCSEEEEECCCTTT---TTHHHHHH
T ss_pred eEEEEeCCCCc-cHHHHHHHHHHHHHCCCEEEECCCCC-----CHHHHHHHHHHcCCCEEEEEeeccCC---HHHHHHHH
Confidence 35444334444 4444 345566789999985 33222 23467788888888888888765544 34555555
Q ss_pred HhhhhccceeeeEEeecC
Q 042466 90 ECKKEYAQILIPVFYRVD 107 (178)
Q Consensus 90 ~~~~~~~~~viPVfy~v~ 107 (178)
+..++.+.. +||+.+..
T Consensus 196 ~~l~~~~~~-~~v~vGG~ 212 (258)
T 2i2x_B 196 DMLLENGIK-IPFACGGG 212 (258)
T ss_dssp HHHHTTTCC-CCEEEEST
T ss_pred HHHHhcCCC-CcEEEECc
Confidence 544444445 89998643
No 32
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=30.13 E-value=1.3e+02 Score=20.41 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=32.3
Q ss_pred HHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCC
Q 042466 32 SALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPS 77 (178)
Q Consensus 32 ~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 77 (178)
..++-.|+.+|... ..+.+...+.+.+++-++.|++++++.+.
T Consensus 16 ~GFrLaGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 16 QGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHcCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 45566799888542 33556667777778889999999999987
No 33
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=29.65 E-value=27 Score=23.71 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=17.1
Q ss_pred ccHHHHHHHHhhcCCcEEE
Q 042466 24 DNFTSHLYSALSRQNIQTF 42 (178)
Q Consensus 24 ~~fv~~L~~aL~~~gi~vf 42 (178)
..|+..|...|..+||+|=
T Consensus 9 q~fi~~lk~lLk~RgIkVk 27 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKVK 27 (94)
T ss_pred hHHHHHHHHHHHHcCeeec
Confidence 4799999999999999984
No 34
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=29.56 E-value=81 Score=26.40 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=36.4
Q ss_pred CcccEEEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHH-HhcceeeEE
Q 042466 9 KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAI-EASAISVII 70 (178)
Q Consensus 9 ~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI-~~S~~~Ivv 70 (178)
..+||+|-.-+++. ...+..|...|.++|++|-+|.. +..+...+..|- ..+...|+|
T Consensus 331 ~p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 331 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEE
Confidence 34899865544443 46788999999999999998761 234444444442 234444433
No 35
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=29.17 E-value=65 Score=23.01 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=29.2
Q ss_pred CcccchHHHHHHHHhcceeeEEecCCCCCChhhHHHH---HHHHHhhhhccceeeeEEeecCcc
Q 042466 49 RGDEISESLVNAIEASAISVIIFSESYPSSRWCLDEL---VKILECKKEYAQILIPVFYRVDPS 109 (178)
Q Consensus 49 ~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL---~~i~~~~~~~~~~viPVfy~v~ps 109 (178)
-|+.+.- ...+. ++.++-|=-... ..||..++ ..+.+..+..+..|..|+..++|.
T Consensus 21 ~G~~v~l---~d~~G-k~vll~F~~t~C-p~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 21 DGKPFGT---KDLKG-KVWVADFMFTNC-QTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp TSCEEEH---HHHTT-SCEEEEEECTTC-SSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCEEeH---HHhCC-CEEEEEEECCCC-CCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 4666652 22343 444444422222 23785544 444444444556677888888874
No 36
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=28.36 E-value=30 Score=23.95 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=15.6
Q ss_pred hchhHHHHHHHHHHHhhhh
Q 042466 131 ENSKKLQTWRKALKEAASL 149 (178)
Q Consensus 131 ~~~~~v~~W~~AL~~v~~~ 149 (178)
++.+..++|.+||..++.+
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~ 119 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTST 119 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 4578899999999999865
No 37
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=28.01 E-value=67 Score=25.30 Aligned_cols=67 Identities=25% Similarity=0.277 Sum_probs=39.0
Q ss_pred HHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHHHHhhhhccc
Q 042466 30 LYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQ 97 (178)
Q Consensus 30 L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~ 97 (178)
|...+...|.-=++|-++..++.+..++.+......+-| |.|-|..+..|-.+|+...+..+...+-
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~ga 170 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELGA 170 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhCC
Confidence 333333444333444455555555556666555555554 4566655556777899888887766553
No 38
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=27.84 E-value=67 Score=22.23 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=30.4
Q ss_pred HHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCC
Q 042466 32 SALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPS 77 (178)
Q Consensus 32 ~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 77 (178)
..++-.|+.+|... .-+++...+.+.+++ ++.|++++++.+.
T Consensus 15 ~GFrLaGie~~~v~---~~ee~~~~~~~l~~~-digIIlIte~ia~ 56 (115)
T 3aon_B 15 SPFRLFGFDVQHGT---TKTEIRKTIDEMAKN-EYGVIYITEQCAN 56 (115)
T ss_dssp GGGGGGTCEEECCC---SHHHHHHHHHHHHHT-TEEEEEEEHHHHT
T ss_pred HHHHHcCCeEEEeC---CHHHHHHHHHHHHhc-CceEEEEeHHHHH
Confidence 34567799888542 235566667777777 9999999998775
No 39
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=27.39 E-value=1.7e+02 Score=20.77 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=35.3
Q ss_pred EEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHH-hcceeeEE
Q 042466 14 FVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIE-ASAISVII 70 (178)
Q Consensus 14 FIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~-~S~~~Ivv 70 (178)
.|.-+.+ ...++..+...|...|+++=+|. ...++.+...|.++-. +.-..|||
T Consensus 13 IlpVs~~--~~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 13 VIVVNKQ--TKDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp EEESSSG--GGHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred EEEeCcc--hHHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 4445433 35899999999999999998864 1126677666666533 34444443
No 40
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=26.86 E-value=36 Score=23.57 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=16.9
Q ss_pred hchhHHHHHHHHHHHhhhhc
Q 042466 131 ENSKKLQTWRKALKEAASLS 150 (178)
Q Consensus 131 ~~~~~v~~W~~AL~~v~~~~ 150 (178)
++++..+.|.+||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 46788999999999998764
No 41
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=26.39 E-value=16 Score=25.55 Aligned_cols=29 Identities=14% Similarity=0.307 Sum_probs=18.7
Q ss_pred cccEEEec---------ccccCcccHHHHHHHHhhcCC
Q 042466 10 KYDVFVSF---------RGEDTRDNFTSHLYSALSRQN 38 (178)
Q Consensus 10 ~ydVFIS~---------~~~D~~~~fv~~L~~aL~~~g 38 (178)
.-|.+++| |....+..|+..|++.|++.+
T Consensus 15 eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 15 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred ccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 35666655 444445678888888887654
No 42
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=26.24 E-value=1.7e+02 Score=21.14 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=53.6
Q ss_pred cEEEe---cccccCcccHHHHHHHHhhcCCc----EEEecC--CC--------CC---c----ccchHHHHHHHHhccee
Q 042466 12 DVFVS---FRGEDTRDNFTSHLYSALSRQNI----QTFIDD--QL--------NR---G----DEISESLVNAIEASAIS 67 (178)
Q Consensus 12 dVFIS---~~~~D~~~~fv~~L~~aL~~~gi----~vf~d~--~~--------~~---G----~~i~~~i~~aI~~S~~~ 67 (178)
.|||. |+... ..+...+..+|+++|. .+|.-. .. .. + ..|...-.++|++|++.
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 46665 34333 4678899999999985 666544 11 11 1 23344455689999999
Q ss_pred eEEecCCCCCChhhHHHHHHHHHhhhhccceeeeE
Q 042466 68 VIIFSESYPSSRWCLDELVKILECKKEYAQILIPV 102 (178)
Q Consensus 68 Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPV 102 (178)
|.++...- .++-+.-|+..+... +..|+-+
T Consensus 83 vA~ldg~~-~D~GT~~EiGyA~A~----gkPVv~~ 112 (157)
T 1f8y_A 83 LGVYIPDE-EDVGLGMELGYALSQ----GKYVLLV 112 (157)
T ss_dssp EEECCGGG-CCHHHHHHHHHHHHT----TCEEEEE
T ss_pred EEEcCCCC-CCccHHHHHHHHHHC----CCeEEEE
Confidence 99987433 345678899887654 3455543
No 43
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=25.77 E-value=1.3e+02 Score=24.74 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=33.3
Q ss_pred CcccEEEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHH
Q 042466 9 KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNA 60 (178)
Q Consensus 9 ~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~a 60 (178)
..++|+|---+++ ....+..|+..|++.|++|-+|.. +..+...+..|
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A 344 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREH 344 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHH
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHH
Confidence 3478887654443 356788999999999999999861 23455455454
No 44
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=24.99 E-value=1.2e+02 Score=26.43 Aligned_cols=102 Identities=9% Similarity=0.071 Sum_probs=58.9
Q ss_pred cccEEEecccccCc--ccHHHHHHHHhhcCCcEEEecC---CCCCcccchHHHHHHHHhcceeeEEecCCCCCCh-----
Q 042466 10 KYDVFVSFRGEDTR--DNFTSHLYSALSRQNIQTFIDD---QLNRGDEISESLVNAIEASAISVIIFSESYPSSR----- 79 (178)
Q Consensus 10 ~ydVFIS~~~~D~~--~~fv~~L~~aL~~~gi~vf~d~---~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~----- 79 (178)
.+-|+|-|-|-|.. .+-+.+|...|..+|++|..-. +-+.+..+.....+.+-... -|+||-..+-+..
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~yl~R~~~~lP~~G-~IvIfdRSwYs~~~v~rv 119 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQWRFWRRLPPKG-RTGIFFGNWYSQMLYARV 119 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCTTHHHHHHCCCTT-CEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCChhhhHHHhCCCCC-eEEEEeCchhhHHHHHHH
Confidence 35688999777752 5688999999999999886422 23334444444444444433 3445544432211
Q ss_pred --hhHH-H----HHHHH--Hh-hhhccceeeeEEeecCccccc
Q 042466 80 --WCLD-E----LVKIL--EC-KKEYAQILIPVFYRVDPSDVR 112 (178)
Q Consensus 80 --wc~~-E----L~~i~--~~-~~~~~~~viPVfy~v~psdV~ 112 (178)
.|-. | +..|. +. .-..+..++=+|+++++..-+
T Consensus 120 ~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~ 162 (500)
T 3czp_A 120 EGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLK 162 (500)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHH
Confidence 2332 2 22222 22 234566888888999986644
No 45
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=24.97 E-value=1.8e+02 Score=20.44 Aligned_cols=27 Identities=4% Similarity=0.117 Sum_probs=18.7
Q ss_pred Ccc-cchHHHHHHHHhcceeeEEecCCC
Q 042466 49 RGD-EISESLVNAIEASAISVIIFSESY 75 (178)
Q Consensus 49 ~G~-~i~~~i~~aI~~S~~~Ivv~S~~y 75 (178)
+|. .+.......++.++.+|+|++-.-
T Consensus 83 ~G~~~~~~~~~~~~~~~d~iilV~D~~~ 110 (192)
T 2il1_A 83 AGQERFNSITSAYYRSAKGIILVYDITK 110 (192)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 443 344445567889999999998654
No 46
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.36 E-value=48 Score=22.65 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=18.0
Q ss_pred hchhHHHHHHHHHHHhhhhcCc
Q 042466 131 ENSKKLQTWRKALKEAASLSGF 152 (178)
Q Consensus 131 ~~~~~v~~W~~AL~~v~~~~G~ 152 (178)
++++..+.|..||..+...+..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 4578899999999999876654
No 47
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.14 E-value=40 Score=22.31 Aligned_cols=19 Identities=32% Similarity=0.622 Sum_probs=15.7
Q ss_pred hchhHHHHHHHHHHHhhhh
Q 042466 131 ENSKKLQTWRKALKEAASL 149 (178)
Q Consensus 131 ~~~~~v~~W~~AL~~v~~~ 149 (178)
++++..+.|..||..++.+
T Consensus 103 ~s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 103 ESPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 3578899999999998764
No 48
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=24.11 E-value=1.7e+02 Score=22.69 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=33.6
Q ss_pred HhhcCCcEEE-ecCCCCCcccchHHHHHHHHhcceeeEEecCCCCC-ChhhHHHHHHHHHhhh
Q 042466 33 ALSRQNIQTF-IDDQLNRGDEISESLVNAIEASAISVIIFSESYPS-SRWCLDELVKILECKK 93 (178)
Q Consensus 33 aL~~~gi~vf-~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~-S~wc~~EL~~i~~~~~ 93 (178)
.++..|.++- ++-+-..+-.+ +.+.+++.. ...|++.+|+... ..+..+++..+.+..+
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~~~-~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~ 174 (361)
T 3ftb_A 114 NAKKHGVSVVFSYLDENMCIDY-EDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAE 174 (361)
T ss_dssp HHHHTTCEEEEEECCTTSCCCH-HHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEeecCcccCCCH-HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhh
Confidence 4455676653 33222222233 577778877 6677777886543 4455667777776443
No 49
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=23.92 E-value=1.2e+02 Score=25.83 Aligned_cols=61 Identities=8% Similarity=0.048 Sum_probs=38.4
Q ss_pred CCcccEEEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEec
Q 042466 8 NKKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFS 72 (178)
Q Consensus 8 ~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S 72 (178)
...+||+|-.-+++. ...+-.+...|+++|++|-+|.. +..+...+..|-..---.++|+.
T Consensus 369 ~~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG 429 (465)
T 3net_A 369 PTPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIG 429 (465)
T ss_dssp SCSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECC
T ss_pred CCCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 345899976545543 46788999999999999998762 23444445454332222444444
No 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=23.66 E-value=2e+02 Score=20.35 Aligned_cols=61 Identities=8% Similarity=0.206 Sum_probs=32.4
Q ss_pred Cc-ccchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHHHHhhhhccceeeeEEeecCccccc
Q 042466 49 RG-DEISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVR 112 (178)
Q Consensus 49 ~G-~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPVfy~v~psdV~ 112 (178)
+| +.+.......++.++.+|+|++.. +....+++...++........-+||+.=....|+.
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVT---CEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETT---CHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECC---ChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 44 344445566788999999999854 33344444443332222111234555545566654
No 51
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=23.59 E-value=1.5e+02 Score=23.72 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCC----cEEEecCCCCCcccchHHHHHHHHh---cceeeEEecCCCCCCh--hhHHHHHHHHH
Q 042466 26 FTSHLYSALSRQN----IQTFIDDQLNRGDEISESLVNAIEA---SAISVIIFSESYPSSR--WCLDELVKILE 90 (178)
Q Consensus 26 fv~~L~~aL~~~g----i~vf~d~~~~~G~~i~~~i~~aI~~---S~~~Ivv~S~~y~~S~--wc~~EL~~i~~ 90 (178)
.+..|.+.|.++| +.|.+- ++-|.+..++..+.+.+ .++.++.+.|.|..|. -..+++..++.
T Consensus 63 q~~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~ 134 (310)
T 2h1v_A 63 QAHNLEQHLNEIQDEITFKAYIG--LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAE 134 (310)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEE--ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEeeh--hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHH
Confidence 4556666776543 455443 55566655555555543 4567778888886543 23445554443
No 52
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=23.09 E-value=1.4e+02 Score=23.96 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=41.2
Q ss_pred CcEEEecCCCCCcccchHHHHHHHH------hcceeeEEecCCCCCChhhHHHHHHHHHhhhhccceeeeEEeecCccc
Q 042466 38 NIQTFIDDQLNRGDEISESLVNAIE------ASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSD 110 (178)
Q Consensus 38 gi~vf~d~~~~~G~~i~~~i~~aI~------~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPVfy~v~psd 110 (178)
|...|++-.-..-+.+..+|..... ..+..|+|=|=||..+ ..|...+...-.-.-.++-||+..-|..
T Consensus 68 ~ad~FI~a~~ksl~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~----~~L~~FlsSi~sP~~sLv~vYH~DvP~~ 142 (270)
T 4a8j_B 68 YCTQFIDATQMDFVHLVKQIISYLPAATATQAKKHMVIIDSLNYIST----EYITRFLSEIASPHCTMVATYHKDIKDE 142 (270)
T ss_dssp TCSEEEETTSSCHHHHHHHHHHTCC-----CCCCEEEEESCGGGSCG----GGHHHHHHHHCCTTEEEEEEEETTSCCC
T ss_pred CCCeeeEcCCCCHHHHHHHHHHhCCCccCCCCcceEEEEecCcchhh----hhHHHHHHHhhcCCcEEEEEecCCCCCC
Confidence 4556666511122333333333322 2367899999999986 5777777665545567888888544443
No 53
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=22.79 E-value=1.9e+02 Score=19.76 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=32.3
Q ss_pred Ccc-cchHHHHHHHHhcceeeEEecCCCCCChhhHHHHHHHHHhhhhccceeeeEEeecCccccc
Q 042466 49 RGD-EISESLVNAIEASAISVIIFSESYPSSRWCLDELVKILECKKEYAQILIPVFYRVDPSDVR 112 (178)
Q Consensus 49 ~G~-~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~~~~~~~viPVfy~v~psdV~ 112 (178)
+|. .+.......++.++.+|+|++.. ++..++++...++........-+|+++=+...|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVT---NQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETT---CHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 443 33334455688899999999854 34445555554443322222234444434445543
No 54
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=22.15 E-value=49 Score=21.30 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=14.1
Q ss_pred hchhHHHHHHHHHHHhh
Q 042466 131 ENSKKLQTWRKALKEAA 147 (178)
Q Consensus 131 ~~~~~v~~W~~AL~~v~ 147 (178)
++++..+.|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 35788999999999875
No 55
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=21.97 E-value=2.2e+02 Score=23.69 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=33.2
Q ss_pred CcccEEEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHH
Q 042466 9 KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNA 60 (178)
Q Consensus 9 ~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~a 60 (178)
...||++..-+++. ...+-.|...|.++||++-+|. ..+..+...+..|
T Consensus 365 ~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A 413 (464)
T 4g84_A 365 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYC 413 (464)
T ss_dssp CCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCS--CSSCCHHHHHHHH
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHH
Confidence 45789988766554 4567789999999999997654 1233454445444
No 56
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=21.83 E-value=1.7e+02 Score=21.79 Aligned_cols=40 Identities=15% Similarity=0.241 Sum_probs=29.6
Q ss_pred hchhHHHHHHHHHHHhhhhcCcccCCCchHHHHHHHHHHHHH
Q 042466 131 ENSKKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYISN 172 (178)
Q Consensus 131 ~~~~~v~~W~~AL~~v~~~~G~~~~~~~~~~~i~~Iv~~i~~ 172 (178)
++++.-.+|.+|+.-++. |-.+-+.+...+|+.|...+.-
T Consensus 112 dsE~QYa~WMAAcrLAsk--GkTmADsSy~sEv~~il~fL~m 151 (165)
T 4bbk_A 112 DHEDQYARWMAACILASK--GKTMADSSYQPEVISILSFLKM 151 (165)
T ss_dssp SSHHHHHHHHHHHHHHHT--TCCTTSTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhccc--ccchhhhhhhHHHHHHHHHHhc
Confidence 356778899999997776 7788777666677777765543
No 57
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=21.73 E-value=30 Score=24.80 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhhcCc
Q 042466 135 KLQTWRKALKEAASLSGF 152 (178)
Q Consensus 135 ~v~~W~~AL~~v~~~~G~ 152 (178)
.+++|..+|.+.++..+|
T Consensus 15 ~v~kW~~sl~Ka~dfDsW 32 (128)
T 1ug7_A 15 LLQRWGASLRRGADFDSW 32 (128)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcH
Confidence 588999999999999987
No 58
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.70 E-value=50 Score=21.53 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=15.4
Q ss_pred hchhHHHHHHHHHHHhhhh
Q 042466 131 ENSKKLQTWRKALKEAASL 149 (178)
Q Consensus 131 ~~~~~v~~W~~AL~~v~~~ 149 (178)
++++..++|..||..++..
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 4578899999999988653
No 59
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=21.09 E-value=2e+02 Score=24.45 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=37.1
Q ss_pred CcccEEEecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEe
Q 042466 9 KKYDVFVSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIF 71 (178)
Q Consensus 9 ~~ydVFIS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~ 71 (178)
...|||+-.-+++. ..-+-.+...|+++|++|-++.. +.++...+..|-+.---.++++
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vvii 418 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLV 418 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEE
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 35788776656554 34677899999999999988641 2345555555544333344444
No 60
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=21.09 E-value=84 Score=26.07 Aligned_cols=58 Identities=14% Similarity=0.291 Sum_probs=36.4
Q ss_pred CCcccEEEecccccCcccHHHHHHHHhhcC--CcEEEecCCCCCcccchHHHHHHH-HhcceeeE
Q 042466 8 NKKYDVFVSFRGEDTRDNFTSHLYSALSRQ--NIQTFIDDQLNRGDEISESLVNAI-EASAISVI 69 (178)
Q Consensus 8 ~~~ydVFIS~~~~D~~~~fv~~L~~aL~~~--gi~vf~d~~~~~G~~i~~~i~~aI-~~S~~~Iv 69 (178)
...+||+|-.-+++ ....+..|+..|+++ |+.|-+|.. +..+...+..|- ......|+
T Consensus 325 ~~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~ii 385 (423)
T 1htt_A 325 DPVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVV 385 (423)
T ss_dssp CCSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEE
T ss_pred CCCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCEEEE
Confidence 34578988765543 246788999999999 999998861 234444444442 23444443
No 61
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=21.07 E-value=1.9e+02 Score=20.18 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhhhhcCcccCCCchHHHHHHHHHHH
Q 042466 134 KKLQTWRKALKEAASLSGFPSQSIRINNKSKRILQYI 170 (178)
Q Consensus 134 ~~v~~W~~AL~~v~~~~G~~~~~~~~~~~i~~Iv~~i 170 (178)
+.+++-++-+.+++...||.++.. .+.+..+++.+
T Consensus 9 ~~~e~~~~f~ek~ae~~G~~~NpD--~evt~~vi~GL 43 (117)
T 1dj7_A 9 KTLAAMKNFAEQYAKRTDTYFCSD--LSVTAVVIEGL 43 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCBCBSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCEECCC--HHHHHHHHHHH
Confidence 444555566778899999999885 33444444443
No 62
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=20.72 E-value=56 Score=21.92 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=16.3
Q ss_pred hchhHHHHHHHHHHHhhhhc
Q 042466 131 ENSKKLQTWRKALKEAASLS 150 (178)
Q Consensus 131 ~~~~~v~~W~~AL~~v~~~~ 150 (178)
++++..+.|..||..+++..
T Consensus 102 ~s~~e~~~Wi~ai~~~i~~~ 121 (122)
T 1dro_A 102 HDDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp SSSHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 45788999999999887643
No 63
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=20.44 E-value=75 Score=21.51 Aligned_cols=44 Identities=14% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCC
Q 042466 32 SALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPS 77 (178)
Q Consensus 32 ~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 77 (178)
..++-.|+..+... ..-+++.+.+.+.+++.++.|++++++.+.
T Consensus 22 ~GFrLaGi~~~~~~--~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 22 IGFMLAGISDIYEV--TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHTTCCCEEEC--CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHcCCCcccCC--CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34556788776621 123456667777788889999999999876
No 64
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=20.32 E-value=63 Score=22.68 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=44.0
Q ss_pred EecccccCcccHHHHHHHHhhcCCcEEEecCCCCCcccchHHHHHHHHhcceeeEEecCCCCCChhh-HHHHHHHHHh
Q 042466 15 VSFRGEDTRDNFTSHLYSALSRQNIQTFIDDQLNRGDEISESLVNAIEASAISVIIFSESYPSSRWC-LDELVKILEC 91 (178)
Q Consensus 15 IS~~~~D~~~~fv~~L~~aL~~~gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc-~~EL~~i~~~ 91 (178)
|.-+|. ....-...|..+.+.+|+-+|.|.| .+|+.|...|.+.+..++. ..+.+.+..=.-+ .+++..+++.
T Consensus 30 I~t~Gs-i~~~~l~~I~~~~~~r~VIi~TD~D-~~GekIRk~i~~~lp~~~h--afi~r~~~gVE~a~~~~I~~aL~~ 103 (119)
T 2fcj_A 30 VCTNGT-ISDARLEELADELEGYDVYLLADAD-EAGEKLRRQFRRMFPEAEH--LYIDRAYREVAAAPIWHLAQVLLR 103 (119)
T ss_dssp EECCSC-CCHHHHHHHHHHTTTSEEEEECCSS-HHHHHHHHHHHHHCTTSEE--ECCCTTTCSTTTSCHHHHHHHHHH
T ss_pred EEeCCc-cCHHHHHHHHHHhcCCCEEEEECCC-ccHHHHHHHHHHHCCCCcE--EeccCCccCcccCCHHHHHHHHHh
Confidence 333444 3333455677777788888888863 4688888888888877753 4455555422222 3455555544
No 65
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=20.26 E-value=39 Score=21.89 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=21.7
Q ss_pred HHHhcceeeEEecCCCCCChhhHHHHHHHHHhh
Q 042466 60 AIEASAISVIIFSESYPSSRWCLDELVKILECK 92 (178)
Q Consensus 60 aI~~S~~~Ivv~S~~y~~S~wc~~EL~~i~~~~ 92 (178)
.+.++.++++|||++---..||-..+..++++.
T Consensus 36 vLCdaeV~livfs~~gk~~~~~s~~~~~il~ry 68 (77)
T 1egw_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (77)
T ss_dssp HHTTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred cccCCeEEEEEECCCCCEeeCCCCCHHHHHHHH
Confidence 457889999999998544445444455555543
No 66
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.15 E-value=57 Score=22.19 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.0
Q ss_pred hchhHHHHHHHHHHHhhh
Q 042466 131 ENSKKLQTWRKALKEAAS 148 (178)
Q Consensus 131 ~~~~~v~~W~~AL~~v~~ 148 (178)
++++..++|.+||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 467889999999998754
Done!