BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042468
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 158/218 (72%), Positives = 175/218 (80%), Gaps = 1/218 (0%)
Query: 127 SVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTS 186
+VPAS+DWRKKGAVT VKDQGQCG CWAFS + A+EGIN I T KL SLSEQELVDCDT
Sbjct: 1 TVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTD 60
Query: 187 GEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++QGC GGLMD AFEFI G+ TEA YPY+A DG+C+ + N A I G+E+VP N
Sbjct: 61 -QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPEN 119
Query: 247 NEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYW 306
+E AL+KAVANQPVSVAIDA GSDFQFYS GVFTG CGTELDHGV VGYGT DGTKYW
Sbjct: 120 DENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYW 179
Query: 307 LVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
VKNSWG WGE GYIRM+R I KEGLCGIAM+ASYP
Sbjct: 180 TVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYP 217
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 306 bits (785), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 143/221 (64%), Positives = 173/221 (78%), Gaps = 4/221 (1%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KGAVTGVKDQG+CG CWAFS V ++EGIN I T L SLSEQEL+DCDT+
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTAD 63
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEA---NPSAAKISGYEDVP 244
D GC+GGLMD+AFE+I +N GL TEA YPY+A+ G+CN A +P I G++DVP
Sbjct: 64 ND-GCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVP 122
Query: 245 SNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTK 304
+N+E L +AVANQPVSVA++ASG F FYS GVFTG+CGTELDHGV VGYG A+DG
Sbjct: 123 ANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKA 182
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
YW VKNSWG +WGE GYIR+++D A GLCGIAM+ASYP
Sbjct: 183 YWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 270 bits (691), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 130/218 (59%), Positives = 156/218 (71%), Gaps = 2/218 (0%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P +DWR GAV +KDQGQCG CWAFS +AA+EGIN I T L SLSEQELVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
+GC+GG M D F+FII+N G+ TEA YPY A +G CN I YE+VP NN
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL AVA QPVSVA++A+G +FQ YSSG+FTG CGT +DH VT VGYGT + G YW+
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGT-EGGIDYWI 179
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
VKNSWGTTWGE GY+R+QR++ G CGIA +ASYP
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYPV 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/218 (59%), Positives = 155/218 (71%), Gaps = 2/218 (0%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P +DWR GAV +KDQGQCG WAFS +AA+EGIN I T L SLSEQELVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
+GC+GG M D F+FII+N G+ TEA YPY A +G CN I YE+VP NN
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL AVA QPVSVA++A+G +FQ YSSG+FTG CGT +DH VT VGYGT + G YW+
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGT-EGGIDYWI 179
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
VKNSWGTTWGE GY+R+QR++ G CGIA +ASYP
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYPV 216
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 261 bits (668), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/320 (45%), Positives = 189/320 (59%), Gaps = 14/320 (4%)
Query: 31 NDATMNER----HEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGI 86
+D T ER WM + + Y + EK RF+IFK+N+ YI N K N Y LG+
Sbjct: 10 DDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK--NNSYWLGL 67
Query: 87 NEFADQTNEEFRAPRNGYKRRLPSVRSSETTDVSFRYEN-ASVPASIDWRKKGAVTGVKD 145
NEFAD +N+EF Y L ++ D F E+ ++P ++DWRKKGAVT V+
Sbjct: 68 NEFADLSNDEFNEK---YVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRH 124
Query: 146 QGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFII 205
QG CG CWAFSAVA +EGIN I T KL LSEQELVDC+ GC+GG A E++
Sbjct: 125 QGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER--RSHGCKGGYPPYALEYVA 182
Query: 206 SNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVANQPVSVAID 265
N G+ +KYPYKA G+C K+ K SG V NNE L+ A+A QPVSV ++
Sbjct: 183 KN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVE 241
Query: 266 ASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQ 325
+ G FQ Y G+F G CGT++D VTAVGYG + L+KNSWGT WGE GYIR++
Sbjct: 242 SKGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIK 300
Query: 326 RDIDAKEGLCGIAMQASYPT 345
R G+CG+ + YPT
Sbjct: 301 RAPGNSPGVCGLYKSSYYPT 320
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 260 bits (665), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 124/218 (56%), Positives = 154/218 (70%), Gaps = 4/218 (1%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P SIDWR+ GAV VK+QG CG CWAFS VAA+EGIN I T L SLSEQ+LVDC T+
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA- 61
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
+ GC GG M+ AF+FI++N G+ +E YPY+ DG CN N I YE+VPS+N
Sbjct: 62 -NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNST-VNAPVVSIDSYENVPSHN 119
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E +L KAVANQPVSV +DA+G DFQ Y SG+FTG C +H +T VGYGT +D +W+
Sbjct: 120 EQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTEND-KDFWI 178
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
VKNSWG WGE+GYIR +R+I+ +G CGI ASYP
Sbjct: 179 VKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 140/325 (43%), Positives = 188/325 (57%), Gaps = 27/325 (8%)
Query: 31 NDATMNER----HEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGI 86
ND T ER E WM ++ ++Y++ EK RF+IFK+N++YI N K N Y LG+
Sbjct: 54 NDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK--NNSYWLGL 111
Query: 87 NEFADQTNEEFRAPRNGYKRRLPSVRSSETTDVSFRYE------NASVPASIDWRKKGAV 140
N FAD +N+EF+ G S+ + TT YE + ++P +DWR+KGAV
Sbjct: 112 NVFADMSNDEFKEKYTG------SIAGNYTT-TELSYEEVLNDGDVNIPEYVDWRQKGAV 164
Query: 141 TGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDA 200
T VK+QG CG WAFSAV+ +E I I T L SEQEL+DCD GC GG A
Sbjct: 165 TPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDR--RSYGCNGGYPWSA 222
Query: 201 FEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVANQPV 260
+ +++ G+ YPY+ C +E P AAK G V NE AL+ ++ANQPV
Sbjct: 223 LQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPV 281
Query: 261 SVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENG 320
SV ++A+G DFQ Y G+F G CG ++DH V AVGY G Y L++NSWGT WGENG
Sbjct: 282 SVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIRNSWGTGWGENG 336
Query: 321 YIRMQRDIDAKEGLCGIAMQASYPT 345
YIR++R G+CG+ + YP
Sbjct: 337 YIRIKRGTGNSYGVCGLYTSSFYPV 361
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 258 bits (659), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 123/218 (56%), Positives = 155/218 (71%), Gaps = 5/218 (2%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P+ +DWR KGAV +K+Q QCG CWAFSAVAA+E IN I T +L SLSEQELVDCDT+
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA- 59
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
GC GG M++AF++II+N G+ T+ YPY A GSC K I+G++ V NN
Sbjct: 60 -SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSC--KPYRLRVVSINGFQRVTRNN 116
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E+AL AVA+QPVSV ++A+G+ FQ YSSG+FTG CGT +HGV VGYGT G YW+
Sbjct: 117 ESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGT-QSGKNYWI 175
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
V+NSWG WG GYI M+R++ + GLCGIA SYPT
Sbjct: 176 VRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 149/217 (68%), Gaps = 2/217 (0%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P+ +DWR GAV +K QG+CG CWAFSA+A +EGIN I T L SLSEQEL+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
+GC GG + D F+FII+N G+ TE YPY A DG CN N I YE+VP NN
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL AV QPVSVA+DA+G F+ YSSG+FTG CGT +DH VT VGYGT + G YW+
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGT-EGGIDYWI 179
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
VKNSW TTWGE GY+R+ R++ G CGIA SYP
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYP 215
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/323 (44%), Positives = 189/323 (58%), Gaps = 19/323 (5%)
Query: 32 DATMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKAR--NKPYKLGINEF 89
D ++ + W A + R+Y N E+ R ++++N++ I N + R + + +N F
Sbjct: 1 DHSLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAF 59
Query: 90 ADQTNEEFRAPRNGYKRRLPSVRSSETTDVSFRYENASVPASIDWRKKGAVTGVKDQGQC 149
D T+EEFR NG + R P R + YE P S+DWR+KG VT VK+QGQC
Sbjct: 60 GDMTSEEFRQVMNGLQNRKP--RKGKVFQEPLFYE---APRSVDWREKGYVTPVKNQGQC 114
Query: 150 GCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNKG 209
G WAFSA A+EG T +L SLSEQ LVDC ++GC GGLMD AF+++ N G
Sbjct: 115 GSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGG 174
Query: 210 LATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVAN-QPVSVAIDASG 268
L +E YPY+A++ SC K S A +G+ D+P E ALMKAVA P+SVAIDA
Sbjct: 175 LDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGH 232
Query: 269 SDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG---TADDGTKYWLVKNSWGTTWGENGYIR 323
F FY G+ F C +E +DHGV VGYG T DG KYWLVKNSWG WG GY++
Sbjct: 233 ESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVK 292
Query: 324 MQRDIDAKEGLCGIAMQASYPTA 346
M +D + CGIA ASYPT
Sbjct: 293 MAKD---RRNHCGIASAASYPTV 312
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/323 (44%), Positives = 189/323 (58%), Gaps = 19/323 (5%)
Query: 32 DATMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKAR--NKPYKLGINEF 89
D ++ + W A + R+Y N E+ R ++++N++ I N + R + + +N F
Sbjct: 5 DHSLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAF 63
Query: 90 ADQTNEEFRAPRNGYKRRLPSVRSSETTDVSFRYENASVPASIDWRKKGAVTGVKDQGQC 149
D T+EEFR NG++ R P R + YE P S+DWR+KG VT VK+QGQC
Sbjct: 64 GDMTSEEFRQVMNGFQNRKP--RKGKVFQEPLFYE---APRSVDWREKGYVTPVKNQGQC 118
Query: 150 GCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNKG 209
G WAFSA A+EG T +L SLSEQ LVDC ++GC GGLMD AF+++ N G
Sbjct: 119 GSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGG 178
Query: 210 LATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVAN-QPVSVAIDASG 268
L +E YPY+A++ SC K S A +G+ D+P E ALMKAVA P+SVAIDA
Sbjct: 179 LDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGH 236
Query: 269 SDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG---TADDGTKYWLVKNSWGTTWGENGYIR 323
F FY G+ F C +E +DHGV VGYG T D KYWLVKNSWG WG GY++
Sbjct: 237 ESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVK 296
Query: 324 MQRDIDAKEGLCGIAMQASYPTA 346
M +D + CGIA ASYPT
Sbjct: 297 MAKD---RRNHCGIASAASYPTV 316
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 244 bits (622), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 149/218 (68%), Gaps = 2/218 (0%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P+ +DWR GAV +K QG+CG WAFSA+A +EGIN IT+ L SLSEQEL+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
+GC+GG + D F+FII++ G+ TE YPY A DG C+ + I YE+VP NN
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL AV QPVSVA+DA+G F+ Y+SG+FTG CGT +DH + VGYGT + G YW+
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGT-EGGVDYWI 179
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
VKNSW TTWGE GY+R+ R++ G CGIA SYP
Sbjct: 180 VKNSWDTTWGEEGYMRILRNV-GGAGTCGIATMPSYPV 216
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 133/266 (50%), Positives = 163/266 (61%), Gaps = 16/266 (6%)
Query: 86 INEFADQTNEEFRAPRNGYKRRLPSVRSSETTDVSFRYENASVPASIDWRKKGAVTGVKD 145
+N F D T+EEFR NG++ R P R + YE P S+DWR+KG VT VK+
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKP--RKGKVFQEPLFYE---APRSVDWREKGYVTPVKN 56
Query: 146 QGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFII 205
QGQCG CWAFSA A+EG T +L SLSEQ LVDC ++GC GGLMD AF+++
Sbjct: 57 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 116
Query: 206 SNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVAN-QPVSVAI 264
N GL +E YPY+A++ SC K S A +G+ D+P E ALMKAVA P+SVAI
Sbjct: 117 DNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAI 174
Query: 265 DASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG---TADDGTKYWLVKNSWGTTWGEN 319
DA F FY G+ F C +E +DHGV VGYG T D KYWLVKNSWG WG
Sbjct: 175 DAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMG 234
Query: 320 GYIRMQRDIDAKEGLCGIAMQASYPT 345
GY++M +D + CGIA ASYPT
Sbjct: 235 GYVKMAKD---RRNHCGIASAASYPT 257
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/218 (56%), Positives = 145/218 (66%), Gaps = 12/218 (5%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P IDWRKKGAVT VK+QG CG CWAFS V+ +E IN I T L SLSEQELVDCD
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
++ GC GG A+++II+N G+ T+A YPYKA G C +A I GY VP N
Sbjct: 59 KNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPC---QAASKVVSIDGYNGVPFCN 115
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL +AVA QP +VAIDAS + FQ YSSG+F+G CGT+L+HGVT VGY YW+
Sbjct: 116 EXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY-----QANYWI 170
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
V+NSWG WGE GYIRM R GLCGIA YPT
Sbjct: 171 VRNSWGRYWGEKGYIRMLR--VGGCGLCGIARLPYYPT 206
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 121/218 (55%), Positives = 145/218 (66%), Gaps = 12/218 (5%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P IDWRKKGAVT VK+QG+CG CWAFS V+ +E IN I T L SLSEQ+LVDC+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNK-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
++ GC+GG A+++II N G+ TEA YPYKA G C A +I GY+ VP N
Sbjct: 59 KNHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPC---RAAKKVVRIDGYKGVPHCN 115
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL KAVA+QP VAIDAS FQ Y SG+F+G CGT+L+HGV VGY YW+
Sbjct: 116 ENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGY-----WKDYWI 170
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
V+NSWG WGE GYIRM+R GLCGIA YPT
Sbjct: 171 VRNSWGRYWGEQGYIRMKR--VGGCGLCGIARLPYYPT 206
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 192/320 (60%), Gaps = 18/320 (5%)
Query: 32 DATMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKAR--NKPYKLGINEF 89
+ ++ E+W + + Y + ++ R I+++N++YI+ N +A Y+L +N
Sbjct: 4 EEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHL 63
Query: 90 ADQTNEEFRAPRNGYKRRLPSVRSSETTDVSFRYENASVPASIDWRKKGAVTGVKDQGQC 149
D T+EE G K L RS++T + +E P S+D+RKKG VT VK+QGQC
Sbjct: 64 GDMTSEEVVQKMTGLKVPLSHSRSNDTLYIP-EWE-GRAPDSVDYRKKGYVTPVKNQGQC 121
Query: 150 GCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNKG 209
G CWAFS+V A+EG T KL +LS Q LVDC + E+ GC GG M +AF+++ N+G
Sbjct: 122 GSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDGCGGGYMTNAFQYVQKNRG 179
Query: 210 LATEAKYPYKASDGSCNKKEANPS--AAKISGYEDVPSNNEAALMKAVAN-QPVSVAIDA 266
+ +E YPY + SC NP+ AAK GY ++P NE AL +AVA PVSVAIDA
Sbjct: 180 IDSEDAYPYVGQEESC---MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDA 236
Query: 267 SGSDFQFYSSGVFTGQ-CGTE-LDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRM 324
S + FQFYS GV+ + C ++ L+H V AVGYG G K+W++KNSWG WG GYI M
Sbjct: 237 SLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILM 295
Query: 325 QRDIDAKEGLCGIAMQASYP 344
R+ K CGIA AS+P
Sbjct: 296 ARN---KNNACGIANLASFP 312
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/318 (42%), Positives = 184/318 (57%), Gaps = 14/318 (4%)
Query: 32 DATMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFN--NKARNKPYKLGINEF 89
D T++ +W YG+ Y++ E+ +R I+++N++++ N + Y LG+N
Sbjct: 5 DPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHL 64
Query: 90 ADQTNEEFRAPRNGYKRRLPSVRSSETTDVSFRYENASVPASIDWRKKGAVTGVKDQGQC 149
D T+EE + + R+PS T S N +P S+DWR+KG VT VK QG C
Sbjct: 65 GDMTSEEVMSLMSSL--RVPSQWQRNITYKSN--PNRILPDSVDWREKGCVTEVKYQGSC 120
Query: 150 GCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE-DQGCEGGLMDDAFEFIISNK 208
G WAFSAV A+E + T KL SLS Q LVDC T ++GC GG M AF++II NK
Sbjct: 121 GAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 180
Query: 209 GLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVANQ-PVSVAIDAS 267
G+ ++A YPYKA D C + ++ AA S Y ++P E L +AVAN+ PVSV +DA
Sbjct: 181 GIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDAR 239
Query: 268 GSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQR 326
F Y SGV + C ++HGV VGYG +G +YWLVKNSWG +GE GYIRM R
Sbjct: 240 HPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIRMAR 298
Query: 327 DIDAKEGLCGIAMQASYP 344
+ K CGIA SYP
Sbjct: 299 N---KGNHCGIASFPSYP 313
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 230 bits (587), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 141/216 (65%), Gaps = 4/216 (1%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P SIDWR KGAVT VK+QG CG WAFS +A +EGIN I T L LSEQELVDCD
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDK--H 59
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
GC+GG + +++ +N G+ T YPY+A C + KI+GY+ VPSN E
Sbjct: 60 SYGCKGGYQTTSLQYV-ANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXE 118
Query: 249 AALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWLV 308
+ + A+ANQP+SV ++A G FQ Y SGVF G CGT+LDH VTAVGYGT+ DG Y ++
Sbjct: 119 TSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTS-DGKNYIII 177
Query: 309 KNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
KNSWG WGE GY+R++R +G CG+ + YP
Sbjct: 178 KNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 213
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/218 (53%), Positives = 141/218 (64%), Gaps = 12/218 (5%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P +DWR KGAV +K+QG+CG CWAFS V +E IN I T L SLSEQ+LVDC S
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDC--SK 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
++ GC+GG D A+++II+N G+ TEA YPYKA G C A +I G + VP N
Sbjct: 59 KNHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPC---RAAKKVVRIDGCKGVPQCN 115
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL AVA+QP VAIDAS FQ Y G+FTG CGT+L+HGV VGY G YW+
Sbjct: 116 ENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGY-----GKDYWI 170
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
V+NSWG WGE GY RM+R GLCGIA YPT
Sbjct: 171 VRNSWGRHWGEQGYTRMKR--VGGCGLCGIARLPFYPT 206
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 142/216 (65%), Gaps = 8/216 (3%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P SIDWR+KGAVT VK+Q CG CWAFS VA +EGIN I T +L SLSEQEL+DC+
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCER--R 59
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
GC+GG + ++++ N G+ TE +YPY+ G C K+ I+GY+ VP+N+E
Sbjct: 60 SHGCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDE 118
Query: 249 AALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWLV 308
+L++A+ANQPVSV D+ G FQFY G++ G CGT DH VTAVGYG Y L+
Sbjct: 119 ISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT-----YLLL 173
Query: 309 KNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
KNSWG WGE GYIR++R +G CG+ + +P
Sbjct: 174 KNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFP 209
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 115/222 (51%), Positives = 150/222 (67%), Gaps = 10/222 (4%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
PASIDWRKKGAVT VKDQG CG CWAF A A+EGI+ ITT +L S+SEQ++VDCDT
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
GG DDAF ++I+N G+A++A YPY DG+C+ + P AA+I GY +VP N+
Sbjct: 62 XX--XGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNK--PIAARIDGYTNVP-NSS 116
Query: 249 AALMKAVANQPVSVAIDASGSDFQFYSS-GVFTGQCGTE----LDHGVTAVGYGTADDGT 303
+AL+ AVA QPVSV I S + FQ Y+ G+F G ++ +DH V VGYG+
Sbjct: 117 SALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNA 176
Query: 304 KYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
YW+VKNSWGT WG +GYI ++R+ + +G+C I SYPT
Sbjct: 177 DYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 140/218 (64%), Gaps = 4/218 (1%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P ++DWRKKGAVT V+ QG CG CWAFSAVA +EGIN I T KL LSEQELVDC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
GC+GG A E++ N G+ +KYPYKA G+C K+ K SG V NN
Sbjct: 59 RSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E L+ A+A QPVSV +++ G FQ Y G+F G CGT++DH VTAVGYG + L
Sbjct: 118 EGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYI-L 176
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
+KNSWGT WGE GYIR++R G+CG+ + YPT
Sbjct: 177 IKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 145/221 (65%), Gaps = 3/221 (1%)
Query: 126 ASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDT 185
+ +PA +DWR +G VT VKDQ CG CWAFS A+EG + T KL SLSEQEL+DC
Sbjct: 5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSR 64
Query: 186 SGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPS 245
+ +Q C GG M+DAF++++ + G+ +E YPY A D C + ++ KI G++DVP
Sbjct: 65 AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEEC-RAQSCEKVVKILGFKDVPR 123
Query: 246 NNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTK- 304
+EAA+ A+A PVS+AI+A FQFY GVF CGT+LDHGV VGYGT + K
Sbjct: 124 RSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKD 183
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
+W++KNSWGT WG +GY+ M +EG CG+ + AS+P
Sbjct: 184 FWIMKNSWGTGWGRDGYMYMAMH-KGEEGQCGLLLDASFPV 223
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/218 (50%), Positives = 140/218 (64%), Gaps = 4/218 (1%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P ++DWRKKGAVT V+ QG CG CWAFSAVA +EGIN I T KL LSEQELVDC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
GC+GG A E++ N G+ +KYPYKA G+C K+ K SG V NN
Sbjct: 59 RSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNN 117
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E L+ A+A QPVSV +++ G FQ Y G+F G CGT+++H VTAVGYG + L
Sbjct: 118 EGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYI-L 176
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
+KNSWGT WGE GYIR++R G+CG+ + YPT
Sbjct: 177 IKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 186/321 (57%), Gaps = 15/321 (4%)
Query: 29 TLNDATMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNK--PYKLGI 86
+L + E+ + + + Y E+ R IFK+NV IA N K Y +
Sbjct: 17 SLPKSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAM 76
Query: 87 NEFADQTNEEFRAPRNGYKRRLPSVRSSETTDVSFRYENASVPASIDWRKKGAVTGVKDQ 146
N+F D + EEF A N K + P + E + + + AS+DWR AV+ VKDQ
Sbjct: 77 NQFGDMSKEEFLAYVNRGKAQKP--KHPENLRMPYVSSKKPLAASVDWRSN-AVSEVKDQ 133
Query: 147 GQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIIS 206
GQCG W+FS A+EG + +LTSLSEQ L+DC +S + GC+GG MD AF + I
Sbjct: 134 GQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY-IH 192
Query: 207 NKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVANQ-PVSVAID 265
+ G+ +E+ YPY+A C + +++ S +SGY D+PS +E +L AV PV+VAID
Sbjct: 193 DYGIMSESAYPYEAQGDYC-RFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAID 251
Query: 266 ASGSDFQFYSSGVFTGQ-CG-TELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIR 323
A+ + QFYS G+F Q C ++L+HGV VGYG+ D+G YW++KNSWG+ WGE+GY R
Sbjct: 252 AT-DELQFYSGGLFYDQTCNQSDLNHGVLVVGYGS-DNGQDYWILKNSWGSGWGESGYWR 309
Query: 324 MQRDIDAKEGLCGIAMQASYP 344
R+ CGIA ASYP
Sbjct: 310 QVRNYGNN---CGIATAASYP 327
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/223 (52%), Positives = 141/223 (63%), Gaps = 10/223 (4%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWRKKG VT VK+Q QCG CWAFSA A+EG T KL SLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
+QGC GG M AF+++ N GL +E YPY A D C + N S A+ +G+ V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPEN-SVAQDTGFTVVAPGK 119
Query: 248 EAALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGY---GTADD 301
E ALMKAVA P+SVA+DA S FQFY SG+ F C ++ LDHGV VGY G D
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 302 GTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
+KYWLVKNSWG WG NGY+++ +D K CGIA ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKD---KNNHCGIATAASYP 219
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/223 (52%), Positives = 143/223 (64%), Gaps = 11/223 (4%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+DWR+KG VT VK+QGQCG CWAFSA A+EG T +L SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
++GC GGLMD AF+++ N GL +E YPY+A++ SC K S A +G+ D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 119
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG---TADDG 302
ALMKAVA P+SVAIDA F FY G+ F C +E +DHGV VGYG T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
KYWLVKNSWG WG GY++M +D + CGIA ASYPT
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/223 (52%), Positives = 143/223 (64%), Gaps = 11/223 (4%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+DWR+KG VT VK+QGQCG CWAFSA A+EG T +L SLSEQ LVDC
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
++GC GGLMD AF+++ N GL +E YPY+A++ SC K S A +G+ D+P E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 120
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG---TADDG 302
ALMKAVA P+SVAIDA F FY G+ F C +E +DHGV VGYG T D
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 180
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
KYWLVKNSWG WG GY++M +D + CGIA ASYPT
Sbjct: 181 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 220
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 215 bits (547), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/223 (52%), Positives = 143/223 (64%), Gaps = 11/223 (4%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+DWR+KG VT VK+QGQCG CWAFSA A+EG T +L SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
++GC GGLMD AF+++ N GL +E YPY+A++ SC K S A +G+ D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQE 119
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG---TADDG 302
ALMKAVA P+SVAIDA F FY G+ F C +E +DHGV VGYG T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
KYWLVKNSWG WG GY++M +D + CGIA ASYPT
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 133/218 (61%), Gaps = 8/218 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P +DWR+KGAVT VK+QG CG CWAFSAV +EGI I T L SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDR-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
GC GG A + +++ G+ YPY+ C +E P AAK G V N
Sbjct: 59 RSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL+ ++ANQPVSV ++A+G DFQ Y G+F G CG ++DH V AVGY G Y L
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYIL 172
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
+KNSWGT WGENGYIR++R G+CG+ + YP
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 128/308 (41%), Positives = 172/308 (55%), Gaps = 16/308 (5%)
Query: 42 WMAQYGRVYRDNAEKEMRFKIFKENVEYIASFN--NKARNKPYKLGINEFADQTNEEFRA 99
W Y + Y + A+ + R I+++NV++I N + Y LG+N+F D T EEF+A
Sbjct: 8 WKRMYNKEY-NGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKA 66
Query: 100 PRNGYKRRLPSVRSSETTDVSFRYENASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVA 159
Y + + V + N +VP IDWR+ G VT VKDQG CG WAFS
Sbjct: 67 K---YLTEMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAFSTTG 123
Query: 160 AMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYK 219
MEG R S SEQ+LVDC + GC GGLM++A+++ + GL TE+ YPY
Sbjct: 124 TMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQFGLETESSYPYT 182
Query: 220 ASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAV-ANQPVSVAIDASGSDFQFYSSGV 278
A +G C + AK++G+ V S +E L V A P +VA+D SDF Y SG+
Sbjct: 183 AVEGQC-RYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVE-SDFMMYRSGI 240
Query: 279 FTGQCGTEL--DHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCG 336
+ Q + L +H V AVGYGT GT YW+VKNSWG +WGE GYIRM R+ + +CG
Sbjct: 241 YQSQTCSPLRVNHAVLAVGYGT-QGGTDYWIVKNSWGLSWGERGYIRMVRN---RGNMCG 296
Query: 337 IAMQASYP 344
IA AS P
Sbjct: 297 IASLASLP 304
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 132/218 (60%), Gaps = 8/218 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P +DWR+KGAVT VK+QG CG CWAFSAV +EGI I T L SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
GC GG A + +++ G+ YPY+ C +E P AAK G V N
Sbjct: 59 RSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
+ AL+ ++ANQPVSV + A+G DFQ Y G+F G CG ++DH V AVGY G Y L
Sbjct: 118 QGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYIL 172
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
+KNSWGT WGENGYIR++R G+CG+ + YP
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 140/223 (62%), Gaps = 10/223 (4%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWRKKG VT VK+Q QCG WAFSA A+EG T KL SLSEQ LVDC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
+QGC GG M AF+++ N GL +E YPY A D C + N S A+ +G+ V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPEN-SVAQDTGFTVVAPGK 119
Query: 248 EAALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGY---GTADD 301
E ALMKAVA P+SVA+DA S FQFY SG+ F C ++ LDHGV VGY G D
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 302 GTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
+KYWLVKNSWG WG NGY+++ +D K CGIA ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKD---KNNHCGIATAASYP 219
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 142/223 (63%), Gaps = 11/223 (4%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+DWR+KG VT VK+QGQCG WAFSA A+EG T +L SLSEQ LVDC
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
++GC GGLMD AF+++ N GL +E YPY+A++ SC K S A +G+ D+P E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 120
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG---TADDG 302
ALMKAVA P+SVAIDA F FY G+ F C +E +DHGV VGYG T D
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 180
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
KYWLVKNSWG WG GY++M +D + CGIA ASYPT
Sbjct: 181 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 220
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 131/217 (60%), Gaps = 8/217 (3%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P +DWR+KGAVT VK+QG CG CWAFSAV +EGI I T L SEQEL+DCD
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR--R 59
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
GC GG A + +++ G+ YPY+ C +E P AAK G V N+
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 249 AALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWLV 308
AL+ ++ANQPVSV + A+G DFQ Y G+F G CG ++DH V AVGY G Y L+
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 309 KNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
KNSWGT WGENGYIR++R G+CG+ + YP
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 142/223 (63%), Gaps = 11/223 (4%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+DWR+KG VT VK+QGQCG WAFSA A+EG T +L SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
++GC GGLMD AF+++ N GL +E YPY+A++ SC K S A +G+ D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 119
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG---TADDG 302
ALMKAVA P+SVAIDA F FY G+ F C +E +DHGV VGYG T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
KYWLVKNSWG WG GY++M +D + CGIA ASYPT
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 142/223 (63%), Gaps = 11/223 (4%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+DWR+KG VT VK+QGQCG WAFSA A+EG T +L SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
++GC GGLMD AF+++ N GL +E YPY+A++ SC K S A +G+ D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 119
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG---TADDG 302
ALMKAVA P+SVAIDA F FY G+ F C +E +DHGV VGYG T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
KYWLVKNSWG WG GY++M +D + CGIA ASYPT
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 132/218 (60%), Gaps = 8/218 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P +DWR+KGAVT VK+QG CG WAFSAV +EGI I T L SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
GC GG A + +++ G+ YPY+ C +E P AAK G V N
Sbjct: 59 RSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL+ ++ANQPVSV ++A+G DFQ Y G+F G CG ++DH V AVGY G Y L
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYIL 172
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
+KNSWGT WGENGYIR++R G+CG+ + YP
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 104/218 (47%), Positives = 132/218 (60%), Gaps = 8/218 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P +DWR+KGAVT VK+QG CG WAFSAV +EGI I T L SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDR-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
GC GG A + +++ G+ YPY+ C +E P AAK G V N
Sbjct: 59 RSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL+ ++ANQPVSV ++A+G DFQ Y G+F G CG ++DH V AVGY G Y L
Sbjct: 118 EGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYIL 172
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
+KNSWGT WGENGYIR++R G+CG+ + YP
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 117/223 (52%), Positives = 142/223 (63%), Gaps = 11/223 (4%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+DWR+KG VT VK+QGQCG WAFSA A+EG T +L SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
++GC GGLMD AF+++ N GL +E YPY+A++ SC K S A +G+ D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIP-KQE 119
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG---TADDG 302
ALMKAVA P+SVAIDA F FY G+ F C +E +DHGV VGYG T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
KYWLVKNSWG WG GY++M +D + CGIA ASYPT
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 131/218 (60%), Gaps = 8/218 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P +DWR+KGAVT VK+QG CG WAFSAV +EGI I T L SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
GC GG A + +++ G+ YPY+ C +E P AAK G V N
Sbjct: 59 RSYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN 117
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
+ AL+ ++ANQPVSV + A+G DFQ Y G+F G CG ++DH V AVGY G Y L
Sbjct: 118 QGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYIL 172
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
+KNSWGT WGENGYIR++R G+CG+ + YP
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 207 bits (527), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 116/222 (52%), Positives = 146/222 (65%), Gaps = 14/222 (6%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
P SID+RKKG VT VK+QGQCG CWAFS+V A+EG T KL +LS Q LVDC +
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPS--AAKISGYEDVPS 245
E+ GC GG M +AF+++ N+G+ +E YPY D SC NP+ AAK GY ++P
Sbjct: 59 ENDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC---MYNPTGKAAKCRGYREIPE 115
Query: 246 NNEAALMKAVAN-QPVSVAIDASGSDFQFYSSGVFTGQ-CGTE-LDHGVTAVGYGTADDG 302
NE AL +AVA PVSVAIDAS + FQFYS GV+ + C ++ L+H V AVGYG G
Sbjct: 116 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGI-QKG 174
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
K+W++KNSWG +WG GYI M R+ K CGIA AS+P
Sbjct: 175 NKHWIIKNSWGESWGNKGYILMARN---KNNACGIANLASFP 213
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 207 bits (526), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 136/217 (62%), Gaps = 4/217 (1%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR KGAVT VK QG C CWAFS VA +EGIN I T L LSEQELVDCD
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDL-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
+ GC G + +++ N G+ AKYPY A +C + K +G V SNN
Sbjct: 59 QSYGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNN 117
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E +L+ A+A+QPVSV ++++G DFQ Y G+F G CGT++DH VTAVGYG + L
Sbjct: 118 EGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYI-L 176
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
+KNSWG WGENGYIR++R G+CG+ + YP
Sbjct: 177 IKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYP 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 145/221 (65%), Gaps = 14/221 (6%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+D+RKKG VT VK+QGQCG CWAFS+V A+EG T KL +LS Q LVDC + E
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--E 58
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPS--AAKISGYEDVPSN 246
+ GC GG M +AF+++ N+G+ +E YPY + SC NP+ AAK GY ++P
Sbjct: 59 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC---MYNPTGKAAKCRGYREIPEG 115
Query: 247 NEAALMKAVAN-QPVSVAIDASGSDFQFYSSGVFTGQ-CGTE-LDHGVTAVGYGTADDGT 303
NE AL +AVA PVSVAIDAS + FQFYS GV+ + C ++ L+H V AVGYG G
Sbjct: 116 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-QKGN 174
Query: 304 KYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
K+W++KNSWG WG GYI M R+ K CGIA AS+P
Sbjct: 175 KHWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 212
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 145/221 (65%), Gaps = 14/221 (6%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+D+RKKG VT VK+QGQCG CWAFS+V A+EG T KL +LS Q LVDC + E
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--E 61
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPS--AAKISGYEDVPSN 246
+ GC GG M +AF+++ N+G+ +E YPY + SC NP+ AAK GY ++P
Sbjct: 62 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC---MYNPTGKAAKCRGYREIPEG 118
Query: 247 NEAALMKAVAN-QPVSVAIDASGSDFQFYSSGVFTGQ-CGTE-LDHGVTAVGYGTADDGT 303
NE AL +AVA PVSVAIDAS + FQFYS GV+ + C ++ L+H V AVGYG G
Sbjct: 119 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-QKGN 177
Query: 304 KYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
K+W++KNSWG WG GYI M R+ K CGIA AS+P
Sbjct: 178 KHWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 145/221 (65%), Gaps = 14/221 (6%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+D+RKKG VT VK+QGQCG CWAFS+V A+EG T KL +LS Q LVDC + E
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--E 59
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPS--AAKISGYEDVPSN 246
+ GC GG M +AF+++ N+G+ +E YPY + SC NP+ AAK GY ++P
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC---MYNPTGKAAKCRGYREIPEG 116
Query: 247 NEAALMKAVAN-QPVSVAIDASGSDFQFYSSGVFTGQ-CGTE-LDHGVTAVGYGTADDGT 303
NE AL +AVA PVSVAIDAS + FQFYS GV+ + C ++ L+H V AVGYG G
Sbjct: 117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-QKGN 175
Query: 304 KYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
K+W++KNSWG WG GYI M R+ K CGIA AS+P
Sbjct: 176 KHWIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 213
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 147/221 (66%), Gaps = 14/221 (6%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P SID+RKKG VT VK+QGQCG CWAFS+V A+EG T L +L+ Q LVDC + E
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVS--E 59
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPS--AAKISGYEDVPSN 246
+ GC GG M +AF+++ N+G+ +E YPY D SC NP+ AAK GY ++P
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC---MYNPTGKAAKCRGYREIPEG 116
Query: 247 NEAALMKAVAN-QPVSVAIDASGSDFQFYSSGVFTGQ-CGTE-LDHGVTAVGYGTADDGT 303
NEAAL +AVA PVSVAIDAS + FQFYS+GV+ + C ++ L+H V AVGYG G
Sbjct: 117 NEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGI-QAGN 175
Query: 304 KYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
K+W++KNSWG +WG GYI M R+ K CGIA AS+P
Sbjct: 176 KHWIIKNSWGESWGNAGYILMARN---KNNACGIANLASFP 213
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 203 bits (517), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 147/221 (66%), Gaps = 14/221 (6%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+D+R+KG VT VK+QGQCG CWAFS+V A+EG T KL +LS Q LVDC + E
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--E 59
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPS--AAKISGYEDVPSN 246
+ GC GG M +AF+++ N+G+ +E YPY + SC NP+ AAK GY ++P
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC---MYNPTGKAAKCRGYREIPEG 116
Query: 247 NEAALMKAVAN-QPVSVAIDASGSDFQFYSSGVFTGQ-CGTE-LDHGVTAVGYGTADDGT 303
NE AL +AVA PVSVAIDAS + FQFYS GV+ + C ++ L+H V AVGYG + G
Sbjct: 117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGES-KGN 175
Query: 304 KYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
K+W++KNSWG WG GYI+M R+ K CGIA AS+P
Sbjct: 176 KHWIIKNSWGENWGMGGYIKMARN---KNNACGIANLASFP 213
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 140/223 (62%), Gaps = 8/223 (3%)
Query: 125 NASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCD 184
N +P S+DWR+KG VT VK QG CG CWAFSAV A+E + T KL SLS Q LVDC
Sbjct: 1 NRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCS 60
Query: 185 TSGE-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDV 243
T ++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA S Y ++
Sbjct: 61 TEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTEL 119
Query: 244 PSNNEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADD 301
P E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +
Sbjct: 120 PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-N 178
Query: 302 GTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
G +YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 179 GKEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 218
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KG VT VK QG CG CWAFSAV A+E + T KL SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 188 E-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA S Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 247 NEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTK 304
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKE 178
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KG VT VK QG CG CWAFSAV A+E + T KL SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 188 E-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA S Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 247 NEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTK 304
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKE 178
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KG VT VK QG CG CWAFSAV A+E + T KL SLS Q LVDC T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 188 E-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA S Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 247 NEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTK 304
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKE 179
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 144/219 (65%), Gaps = 14/219 (6%)
Query: 131 SIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQ 190
S+D+RKKG VT VK+QGQCG CWAFS+V A+EG T KL +LS Q LVDC + E+
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--END 59
Query: 191 GCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPS--AAKISGYEDVPSNNE 248
GC GG M +AF+++ N+G+ +E YPY + SC NP+ AAK GY ++P NE
Sbjct: 60 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC---MYNPTGKAAKCRGYREIPEGNE 116
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGVFTGQ-CGTE-LDHGVTAVGYGTADDGTKY 305
AL +AVA PVSVAIDAS + FQFYS GV+ + C ++ L+H V AVGYG G K+
Sbjct: 117 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-QKGNKH 175
Query: 306 WLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
W++KNSWG WG GYI M R+ K CGIA AS+P
Sbjct: 176 WIIKNSWGENWGNKGYILMARN---KNNACGIANLASFP 211
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KG VT VK QG CG CWAFSAV A+E + T KL SLS Q LVDC T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 188 E-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA S Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 247 NEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTK 304
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKE 179
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 139/220 (63%), Gaps = 8/220 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KG VT VK QG CG CWAFSAV A+E + T KL +LS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 188 E-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA S Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 247 NEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTK 304
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKE 178
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 201 bits (511), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 138/220 (62%), Gaps = 8/220 (3%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+DWR+KG VT VK+QGQCG +AFSA A+EG T +L SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
++GC GGLMD AF+++ N GL +E YPY+A++ SC K S A G+ D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDVGFVDIP-KQE 119
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGVF--TGQCGTELDHGVTAVGYGTADDGTKY 305
ALMKAVA P+SVAIDA F FY G++ + + L+H + VGYG + KY
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKY 179
Query: 306 WLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
WLVKNSWG WG GY++M +D + CGIA ASYPT
Sbjct: 180 WLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 216
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 136/220 (61%), Gaps = 8/220 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KG VT VK QG CG CWAFSAV A+E + T KL SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 188 E-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++GC GG M AF++II NKG+ ++A YPYKA D C A AA Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSAY-RAATCRKYTELPYG 119
Query: 247 NEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTK 304
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKE 178
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEKGYIRMARN---KGNHCGIASFPSYP 215
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 201 bits (510), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 138/220 (62%), Gaps = 8/220 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KG VT VK QG CG CWAFSAV A+E + T KL SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 188 E-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCRKYTELPYG 119
Query: 247 NEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTK 304
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKE 178
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEKGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 140/222 (63%), Gaps = 8/222 (3%)
Query: 126 ASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDT 185
A++P S+DWR+KG VT VK QG CG WAFSAV A+E + T KL SLS Q LVDC T
Sbjct: 1 AALPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 60
Query: 186 SGE-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVP 244
++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA S Y ++P
Sbjct: 61 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELP 119
Query: 245 SNNEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDG 302
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G
Sbjct: 120 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NG 178
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
+YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 179 KEYWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 217
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 138/220 (62%), Gaps = 8/220 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KG VT VK QG CG WAFSAV A+E + T KL SLS Q LVDC T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 188 E-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA S Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 247 NEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTK 304
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G +
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKE 179
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 180 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 216
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 138/220 (62%), Gaps = 8/220 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KG VT VK QG CG WAFSAV A+E + T KL SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 188 E-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA S Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 247 NEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTK 304
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKE 178
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 138/220 (62%), Gaps = 8/220 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P S+DWR+KG VT VK QG CG WAFSAV A+E + T KL SLS Q LVDC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 188 E-DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN 246
++GC GG M AF++II NKG+ ++A YPYKA D C + ++ AA S Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKC-QYDSKYRAATCSKYTELPYG 119
Query: 247 NEAALMKAVANQ-PVSVAIDASGSDFQFYSSGV-FTGQCGTELDHGVTAVGYGTADDGTK 304
E L +AVAN+ PVSV +DA F Y SGV + C ++HGV VGYG +G +
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKE 178
Query: 305 YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YWLVKNSWG +GE GYIRM R+ K CGIA SYP
Sbjct: 179 YWLVKNSWGHNFGEEGYIRMARN---KGNHCGIASFPSYP 215
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/218 (48%), Positives = 136/218 (62%), Gaps = 8/218 (3%)
Query: 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
+P SIDWR+KGAVT V++QG CG CW FS+VAA+EGIN I T +L SLSEQEL+DC+
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCER-- 58
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
GC GG A +++ +N G+ YPY+ C +A K G VP NN
Sbjct: 59 RSYGCRGGFPLYALQYV-ANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNN 117
Query: 248 EAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWL 307
E AL++ +A QPVS+ ++A G FQ Y G+F G CGT +DH V AVGY G Y L
Sbjct: 118 EQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGY-----GNDYIL 172
Query: 308 VKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
+KNSWGT WGE GYIR++R +G CG+ + +PT
Sbjct: 173 IKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPT 210
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 176/324 (54%), Gaps = 28/324 (8%)
Query: 37 ERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNK--PYKLGINEFADQTN 94
E+ E + Y R Y + E+ R +IF++ +E N K R Y LG+N F D T
Sbjct: 20 EKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTP 79
Query: 95 EEFRA-------PRNGYKRRLP-SVRSSETTDVSFRYENASVPASIDWRKKGAVTGVKDQ 146
EE +A P + +K +P R + S RY PAS DWR +G V+ VK+Q
Sbjct: 80 EEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRY-----PASFDWRDQGMVSPVKNQ 134
Query: 147 GQCGCCWAFSAVAAMEGINHITTRKL--TSLSEQELVDCDTSGEDQGCEGGLMDDAFEFI 204
G CG WAFS+ A+E I +S+SEQ+LVDC + GC GG M+DAF ++
Sbjct: 135 GSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA--LGCSGGWMNDAFTYV 192
Query: 205 ISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVANQ-PVSVA 263
N G+ +E YPY+ +DG+C+ + N AA++SGY + +E L VA + PV+VA
Sbjct: 193 AQNGGIDSEGAYPYEMADGNCH-YDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVA 251
Query: 264 IDASGSDFQFYSSGV-FTGQCGT-ELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGY 321
DA F YS GV + C T + H V VGYG ++G YWLVKNSWG WG +GY
Sbjct: 252 FDAD-DPFGSYSGGVYYNPTCETNKFTHAVLIVGYGN-ENGQDYWLVKNSWGDGWGLDGY 309
Query: 322 IRMQRDIDAKEGLCGIAMQASYPT 345
++ R+ + CGIA AS PT
Sbjct: 310 FKIARNANNH---CGIAGVASVPT 330
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 134/226 (59%), Gaps = 14/226 (6%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S DW KKG +T VK QGQCG WAFSA A+E + I T L SLSEQEL+DC E
Sbjct: 3 PESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDC--VDE 60
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPS------AAKISGYED 242
+GC G +FE+++ + G+A+EA YPYKA DG C E +I E
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNES 120
Query: 243 VPSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFT-GQCGTE--LDHGVTAVGYGTA 299
S E++L V QP+SV+IDA DF FYS G++ G C + ++H V VGYG+
Sbjct: 121 TESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYGS- 177
Query: 300 DDGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
+DG YW+ KNSWG WG +GYIR+QR+ G+CG+ ASYP
Sbjct: 178 EDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 136/222 (61%), Gaps = 13/222 (5%)
Query: 129 PASIDWRKKG-AVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSG 187
P S+DWRKKG V+ VK+QG CG CW FS A+E I T K+ SL+EQ+LVDC +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 188 EDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNN 247
+ GC+GGL AFE+I NKG+ E YPYK D C K + + + A + ++ N+
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHC-KFQPDKAIAFVKDVANITMND 120
Query: 248 EAALMKAVA-NQPVSVAIDASGSDFQFYSSGVFTG----QCGTELDHGVTAVGYGTADDG 302
E A+++AVA PVS A + + +DF Y G+++ + +++H V AVGYG ++G
Sbjct: 121 EEAMVEAVALYNPVSFAFEVT-NDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGE-ENG 178
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
YW+VKNSWG WG NGY ++R + +CG+A ASYP
Sbjct: 179 IPYWIVKNSWGPQWGMNGYFLIERG----KNMCGLAACASYP 216
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 128/202 (63%), Gaps = 9/202 (4%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
PA++DWR+KGAVT VKDQGQCG CWAFS + +EG + L SLSEQ LV CDT
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTI-- 59
Query: 189 DQGCEGGLMDDAFEFIISNKG--LATEAKYPYKASDGSCNKKEANPS--AAKISGYEDVP 244
D GC GGLMD+AF +I+++ G + TEA YPY + +G + + N A I+ + D+P
Sbjct: 60 DFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLP 119
Query: 245 SNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTK 304
+ +A N P+++A+DA + F Y+ G+ T +LDHGV VGY A +
Sbjct: 120 QDEDAIAAYLAENGPLAIAVDA--TSFMDYNGGILTSCTSEQLDHGVLLVGYNDASN-PP 176
Query: 305 YWLVKNSWGTTWGENGYIRMQR 326
YW++KNSW WGE+GYIR+++
Sbjct: 177 YWIIKNSWSNMWGEDGYIRIEK 198
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 123/203 (60%), Gaps = 11/203 (5%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
PA++DWR +GAVT VKDQGQCG CWAFSA+ +E + LT+LSEQ LV CD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 189 DQGCEGGLMDDAFEFII--SNKGLATEAKYPYKASDG---SCNKKEANPSAAKISGYEDV 243
D GC GGLM++AFE+I+ +N + TE YPY + +G C + A I+G+ ++
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS-GHTVGATITGHVEL 118
Query: 244 PSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGT 303
P + N PV+VA+DA S + Y+ GV T +LDHGV VGY +
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYNDS-AAV 175
Query: 304 KYWLVKNSWGTTWGENGYIRMQR 326
YW++KNSW T WGE GYIR+ +
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAK 198
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 125/205 (60%), Gaps = 15/205 (7%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
PA++DWR +GAVT VKDQGQCG CWAFSA+ +E + LT+L+EQ LV CD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 189 DQGCEGGLMDDAFEFII--SNKGLATEAKYPYKASDG---SCNKKEANPSAAKISGYEDV 243
D GC GGLM++AFE+I+ +N + TE YPY + +G C + A I+G+ ++
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS-GHTVGATITGHVEL 118
Query: 244 PSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDG- 302
P + N PV+VA+DA S + Y+ GV T +LDHGV VGY +DG
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGY---NDGA 173
Query: 303 -TKYWLVKNSWGTTWGENGYIRMQR 326
YW++KNSW T WGE GYIR+ +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAK 198
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/205 (44%), Positives = 125/205 (60%), Gaps = 15/205 (7%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
PA++DWR +GAVT VKDQGQCG CWAFSA+ +E + LT+L+EQ LV CD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-- 59
Query: 189 DQGCEGGLMDDAFEFII--SNKGLATEAKYPYKASDG---SCNKKEANPSAAKISGYEDV 243
D GC GGLM++AFE+I+ +N + TE YPY + +G C + A I+G+ ++
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS-GHTVGATITGHVEL 118
Query: 244 PSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDG- 302
P + N PV+VA+DA S + Y+ GV T +LDHGV VGY +DG
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGY---NDGA 173
Query: 303 -TKYWLVKNSWGTTWGENGYIRMQR 326
YW++KNSW T WGE GYIR+ +
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIAK 198
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 122/203 (60%), Gaps = 11/203 (5%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
PA++DWR +GAVT VKDQGQCG CWAFSA+ +E + LT+LSEQ LV CD +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-- 59
Query: 189 DQGCEGGLMDDAFEFII--SNKGLATEAKYPYKASDG---SCNKKEANPSAAKISGYEDV 243
D GC GGLM++AFE+I+ +N + TE YPY + +G C + A I+G+ ++
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTS-GHTVGATITGHVEL 118
Query: 244 PSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGT 303
P + N PV+VA+DA S + Y+ GV T LDHGV VGY +
Sbjct: 119 PQDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEALDHGVLLVGYNDS-AAV 175
Query: 304 KYWLVKNSWGTTWGENGYIRMQR 326
YW++KNSW T WGE GYIR+ +
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAK 198
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 112/172 (65%), Gaps = 5/172 (2%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+DWR+KG VT VK+QGQCG CWAFSA A+EG T +L SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
++GC GGLMD AF+++ N GL +E YPY+A++ SC K S A +G+ D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 119
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG 297
ALMKAVA P+SVAIDA F FY G+ F C +E +DHGV VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P S+DWR+KG VT VK+QGQCG WAFSA A+EG T +L SLSEQ LVDC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNE 248
++GC GGLMD AF+++ N GL +E YPY+A++ SC K S A +G+ D+P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIP-KQE 119
Query: 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGV-FTGQCGTE-LDHGVTAVGYG 297
ALMKAVA P+SVAIDA F FY G+ F C +E +DHGV VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 125/233 (53%), Gaps = 14/233 (6%)
Query: 121 FRYENASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQEL 180
+R E A+ DWR VT VKDQ CG CWAFS++ ++E I KL +LSEQEL
Sbjct: 11 YRGEENFDHAAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQEL 70
Query: 181 VDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGY 240
VDC S ++ GC GGL+++AFE +I G+ + YPY + + + I Y
Sbjct: 71 VDC--SFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNY 128
Query: 241 EDVPSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTAD 300
VP N ++ + P+S+++ A DF FY G+F G+CG +L+H V VG+G +
Sbjct: 129 LSVPDNKLKEALRFLG--PISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKE 185
Query: 301 -------DGTK--YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
G K Y+++KNSWG WGE G+I ++ D CG+ A P
Sbjct: 186 IVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIP 238
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 122/222 (54%), Gaps = 16/222 (7%)
Query: 133 DWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGC 192
DWR G VT VKDQ CG CWAFS+V ++E I + L SEQELVDC S ++ GC
Sbjct: 25 DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDC--SVKNNGC 82
Query: 193 EGGLMDDAFEFIISNKGLATEAKYPYKAS-DGSCNKKEANPSAAKISGYEDVPSNNEAAL 251
GG + +AF+ +I GL ++ YPY ++ +CN K N I Y +P +
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYT-IKSYVSIPDDKFKEA 141
Query: 252 MKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTAD---------DG 302
++ + P+S++I AS DF FY G + G+CG +H V VGYG D +
Sbjct: 142 LRYLG--PISISIAAS-DDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEK 198
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
Y+++KNSWG+ WGE GYI ++ D + + C I +A P
Sbjct: 199 FYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVP 240
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 124/233 (53%), Gaps = 14/233 (6%)
Query: 121 FRYENASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQEL 180
+R E A+ DWR VT VKDQ CG WAFS++ ++E I KL +LSEQEL
Sbjct: 10 YRGEENFDHAAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQEL 69
Query: 181 VDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGY 240
VDC S ++ GC GGL+++AFE +I G+ + YPY + + + I Y
Sbjct: 70 VDC--SFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNY 127
Query: 241 EDVPSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTAD 300
VP N ++ + P+S+++ A DF FY G+F G+CG +L+H V VG+G +
Sbjct: 128 LSVPDNKLKEALRFLG--PISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKE 184
Query: 301 -------DGTK--YWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344
G K Y+++KNSWG WGE G+I ++ D CG+ A P
Sbjct: 185 IVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIP 237
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 117/220 (53%), Gaps = 18/220 (8%)
Query: 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188
P DWR KGAVT VKDQG CG CWAFS +EG + L SLSEQEL+DCD
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM-- 59
Query: 189 DQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVP-SNN 247
D+ C GGL +A+ I + GL TE Y Y+ SC + + AK+ + V S N
Sbjct: 60 DKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSC---QFSAEKAKVYIQDSVELSQN 116
Query: 248 EAALMKAVANQ-PVSVAIDASGSDFQFYSSGV---FTGQCGTEL-DHGVTAVGYGTADDG 302
E L +A + P+SVAI+A G QFY G+ C L DH V VGYG D
Sbjct: 117 EQKLAAWLAKRGPISVAINAFG--MQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSD- 173
Query: 303 TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQAS 342
+W +KNSWGT WGE GY + R G CG+ AS
Sbjct: 174 VPFWAIKNSWGTDWGEKGYYYLHRG----SGACGVNTMAS 209
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 140/302 (46%), Gaps = 33/302 (10%)
Query: 40 EMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGINEFADQ---TNEE 96
E + + + Y ++E K F E+V+Y+ S N A N L ++EF ++ + E
Sbjct: 9 EEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NGGAINHLSDLSLDEFKNRFLMSAEA 67
Query: 97 FRAPRNGYKRRLPSVRSSETTDVSFRYENASVPASIDWRKKGAVTGVKDQGQCGCCWAFS 156
F + + ++ET S N + PA ID R+ VT ++ QG CG WAFS
Sbjct: 68 FEHLKTQFDL------NAETNACSI---NGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFS 118
Query: 157 AVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY 216
VAA E + L+EQELVDC GC G + E+I N G+ E+ Y
Sbjct: 119 GVAATESAYLAYRDQSLDLAEQELVDC---ASQHGCHGDTIPRGIEYIQHN-GVVQESYY 174
Query: 217 PYKASDGSCNKKEANPSAAK--ISGYEDVPSNNEAALMKAVANQPVSVAIDASGSDFQFY 274
Y A + SC + P+A + IS Y + N + +A+A ++A+ D +
Sbjct: 175 RYVAREQSCRR----PNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAF 230
Query: 275 SSGVFTGQCGTELD-------HGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRD 327
+ G+ + D H V VGY A G YW+V+NSW T WG+NGY +
Sbjct: 231 RH--YDGRTIIQRDNGYQPNYHAVNIVGYSNA-QGVDYWIVRNSWDTNWGDNGYGYFAAN 287
Query: 328 ID 329
ID
Sbjct: 288 ID 289
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 128/251 (50%), Gaps = 35/251 (13%)
Query: 103 GYKRRLPSVRSSETTDVSFRYENASVPASIDWRKKGA---VTGVKDQGQCGCCWAFSAVA 159
G+ R++P + + T + + +P S DWR V+ V++Q CG C++F+++
Sbjct: 183 GHSRKIPRPKPAPLT-AEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMG 241
Query: 160 AMEGINHITTR--KLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNK-----GLAT 212
+E I T + LS QE+V C S QGCEGG F ++I+ K GL
Sbjct: 242 MLEARIRILTNNSQTPILSPQEVVSC--SQYAQGCEGG-----FPYLIAGKYAQDFGLVE 294
Query: 213 EAKYPYKASDGSCNKKE-----ANPSAAKISGYEDVPSNNEAAL-MKAVANQPVSVAIDA 266
EA +PY +D C KE + + G+ NEA + ++ V + P++VA +
Sbjct: 295 EACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYG--GCNEALMKLELVHHGPMAVAFEV 352
Query: 267 SGSDFQFYSSGVF--TGQCGT----EL-DHGVTAVGYGT-ADDGTKYWLVKNSWGTTWGE 318
DF Y G++ TG EL +H V VGYGT + G YW+VKNSWGT WGE
Sbjct: 353 Y-DDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGE 411
Query: 319 NGYIRMQRDID 329
NGY R++R D
Sbjct: 412 NGYFRIRRGTD 422
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 102/212 (48%), Gaps = 16/212 (7%)
Query: 125 NASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCD 184
N + PA ID R+ VT ++ QG CG CWAFS VAA E ++ L+EQELVDC
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDC- 65
Query: 185 TSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVP 244
GC G + E+I N G+ E+ Y Y A + SC + N IS Y +
Sbjct: 66 --ASQHGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIY 120
Query: 245 SNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELD-------HGVTAVGYG 297
N + +A+A ++A+ D + + G+ + D H V VGY
Sbjct: 121 PPNANKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYS 178
Query: 298 TADDGTKYWLVKNSWGTTWGENGYIRMQRDID 329
A G YW+V+NSW T WG+NGY +ID
Sbjct: 179 NA-QGVDYWIVRNSWDTNWGDNGYGYFAANID 209
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 101/212 (47%), Gaps = 16/212 (7%)
Query: 125 NASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCD 184
N + PA ID R+ VT ++ QG CG CWAFS VAA E + L+EQELVDC
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDC- 65
Query: 185 TSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVP 244
GC G + E+I N G+ E+ Y Y A + SC + N IS Y +
Sbjct: 66 --ASQHGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIY 120
Query: 245 SNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELD-------HGVTAVGYG 297
N + +A+A ++A+ D + + G+ + D H V VGY
Sbjct: 121 PPNVNKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYS 178
Query: 298 TADDGTKYWLVKNSWGTTWGENGYIRMQRDID 329
A G YW+V+NSW T WG+NGY +ID
Sbjct: 179 NA-QGVDYWIVRNSWDTNWGDNGYGYFAANID 209
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 135/263 (51%), Gaps = 32/263 (12%)
Query: 101 RNGYKRRLPSVRSSETTDVSFRYENASVPASIDWRK-KGA--VTGVKDQGQCGCCWAFSA 157
R+G+ R+ + + TD + + S+P S DWR +G V+ V++Q CG C++F++
Sbjct: 180 RSGHSGRILRPKPAPITD-EIQQQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFAS 238
Query: 158 VAAMEGINHITTR--KLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNK-----GL 210
+ +E I T + LS QE+V C S QGC+GG F ++I+ K G+
Sbjct: 239 LGMLEARIRILTNNSQTPILSPQEVVSC--SPYAQGCDGG-----FPYLIAGKYAQDFGV 291
Query: 211 ATEAKYPYKASDGSCNKKE---ANPSAAKISGYEDVPSNNEAAL-MKAVANQPVSVAIDA 266
E +PY A+D C KE S+ NEA + ++ V + P++VA +
Sbjct: 292 VEENCFPYTATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEV 351
Query: 267 SGSDFQFYSSGVF--TGQCGT----EL-DHGVTAVGYGTAD-DGTKYWLVKNSWGTTWGE 318
DF Y SG++ TG EL +H V VGYG G YW+VKNSWG+ WGE
Sbjct: 352 H-DDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGE 410
Query: 319 NGYIRMQRDIDAKEGLCGIAMQA 341
+GY R++R D + + IAM A
Sbjct: 411 SGYFRIRRGTD-ECAIESIAMAA 432
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 99/207 (47%), Gaps = 16/207 (7%)
Query: 122 RYENASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELV 181
R + +VP+ +D R VT ++ QG CG CWAFS VAA E LSEQELV
Sbjct: 5 RINSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELV 64
Query: 182 DCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYE 241
DC GC G + E+I N G+ E YPY A + C + N IS Y
Sbjct: 65 DC---ASQHGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQRC--RRPNSQHYGISNYC 118
Query: 242 DVPSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELD-------HGVTAV 294
+ + + +A+ ++A+ D + + + G+ + D H V V
Sbjct: 119 QIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQH--YDGRTIIQHDNGYQPNYHAVNIV 176
Query: 295 GYGTADDGTKYWLVKNSWGTTWGENGY 321
GYG+ G YW+V+NSW TTWG++GY
Sbjct: 177 GYGST-QGDDYWIVRNSWDTTWGDSGY 202
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 101/212 (47%), Gaps = 16/212 (7%)
Query: 125 NASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCD 184
N + PA ID R+ VT ++ QG CG WAFS VAA E ++ L+EQELVDC
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDC- 65
Query: 185 TSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVP 244
GC G + E+I N G+ E+ Y Y A + SC + N IS Y +
Sbjct: 66 --ASQHGCHGDTIPRGIEYIQHN-GVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIY 120
Query: 245 SNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELD-------HGVTAVGYG 297
N + +A+A ++A+ D + + G+ + D H V VGY
Sbjct: 121 PPNANKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYS 178
Query: 298 TADDGTKYWLVKNSWGTTWGENGYIRMQRDID 329
A G YW+V+NSW T WG+NGY +ID
Sbjct: 179 NA-QGVDYWIVRNSWDTNWGDNGYGYFAANID 209
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 113/253 (44%), Gaps = 46/253 (18%)
Query: 124 ENASVPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSL--SE 177
E+ +PAS D W + + ++DQG CG CWAF AV A+ I T S+ S
Sbjct: 60 EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSA 119
Query: 178 QELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PYK---------AS 221
++L+ C S GC GG +A+ F + KGL + Y PY S
Sbjct: 120 EDLLTCCGSMCGDGCNGGYPAEAWNFW-TRKGLVSGGLYESHVGCRPYSIPPCEHHVNGS 178
Query: 222 DGSCNKKEANPSAAKIS--------------GYEDVP-SNNEAALMKAV-ANQPVSVAID 265
C + P +KI GY SN+E +M + N PV A
Sbjct: 179 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 238
Query: 266 ASGSDFQFYSSGVFTGQCGTELD-HGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRM 324
SDF Y SGV+ G + H + +G+G ++GT YWLV NSW T WG+NG+ ++
Sbjct: 239 VY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKI 296
Query: 325 QRDIDAKEGLCGI 337
R D CGI
Sbjct: 297 LRGQDH----CGI 305
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 111/249 (44%), Gaps = 46/249 (18%)
Query: 128 VPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTS--LSEQELV 181
+PAS D W + + ++DQG CG CWAF AV A+ I T S +S ++L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 182 DCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PYK---------ASDGSC 225
C S GC GG +A+ F + KGL + Y PY S C
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNF-WTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 226 NKKEANPSAAKIS--------------GYEDVP-SNNEAALMKAV-ANQPVSVAIDASGS 269
+ P +KI GY SN+E +M + N PV A S
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-S 179
Query: 270 DFQFYSSGVFTGQCGTEL-DHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDI 328
DF Y SGV+ G + H + +G+G ++GT YWLV NSW T WG+NG+ ++ R
Sbjct: 180 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 238
Query: 329 DAKEGLCGI 337
D CGI
Sbjct: 239 DH----CGI 243
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 111/249 (44%), Gaps = 46/249 (18%)
Query: 128 VPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTS--LSEQELV 181
+PAS D W + + ++DQG CG CWAF AV A+ I T S +S ++L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 182 DCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PYK---------ASDGSC 225
C S GC GG +A+ F + KGL + Y PY S C
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNF-WTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 226 NKKEANPSAAKIS--------------GYEDVP-SNNEAALMKAV-ANQPVSVAIDASGS 269
+ P +KI GY SN+E +M + N PV A S
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-S 180
Query: 270 DFQFYSSGVFTGQCGTEL-DHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDI 328
DF Y SGV+ G + H + +G+G ++GT YWLV NSW T WG+NG+ ++ R
Sbjct: 181 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 239
Query: 329 DAKEGLCGI 337
D CGI
Sbjct: 240 DH----CGI 244
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 111/249 (44%), Gaps = 46/249 (18%)
Query: 128 VPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTS--LSEQELV 181
+PAS D W + + ++DQG CG CWAF AV A+ I T S +S ++L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 182 DCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PYK---------ASDGSC 225
C S GC GG +A+ F + KGL + Y PY S C
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNF-WTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 226 NKKEANPSAAKIS--------------GYEDVP-SNNEAALMKAV-ANQPVSVAIDASGS 269
+ P +KI GY SN+E +M + N PV A S
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-S 178
Query: 270 DFQFYSSGVFTGQCGTEL-DHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDI 328
DF Y SGV+ G + H + +G+G ++GT YWLV NSW T WG+NG+ ++ R
Sbjct: 179 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 237
Query: 329 DAKEGLCGI 337
D CGI
Sbjct: 238 DH----CGI 242
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 112/253 (44%), Gaps = 46/253 (18%)
Query: 124 ENASVPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSL--SE 177
E+ +PAS D W + + ++DQG CG WAF AV A+ I T S+ S
Sbjct: 3 EDLKLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSA 62
Query: 178 QELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PYK---------AS 221
++L+ C S GC GG +A+ F + KGL + Y PY +
Sbjct: 63 EDLLTCCGSMCGDGCNGGYPAEAWNFW-TRKGLVSGGLYESHVGCRPYSIPPCEAHVNGA 121
Query: 222 DGSCNKKEANPSAAKIS--------------GYEDVP-SNNEAALMKAV-ANQPVSVAID 265
C + P +KI GY SN+E +M + N PV A
Sbjct: 122 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 181
Query: 266 ASGSDFQFYSSGVFTGQCGTELD-HGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRM 324
SDF Y SGV+ G + H + +G+G ++GT YWLV NSW T WG+NG+ ++
Sbjct: 182 VY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKI 239
Query: 325 QRDIDAKEGLCGI 337
R D CGI
Sbjct: 240 LRGQDH----CGI 248
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 110/242 (45%), Gaps = 44/242 (18%)
Query: 128 VPASIDWRKK----GAVTGVKDQGQCGCCWAFSAVAAMEGINHITT--RKLTSLSEQELV 181
+P+S D RKK ++ ++DQ +CG CWAF AV AM + I + ++ LS +L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 182 DCDTSGEDQGCEGGLMDDAFEFIISNKGLAT----------------------EAKYP-- 217
C S GCEGG++ A+++ + +G+ T + KYP
Sbjct: 63 SCCESC-GLGCEGGILGPAWDYWV-KEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPC 120
Query: 218 ----YKA--SDGSCNKKEANP-SAAKISGYEDV-PSNNEAALMKAVANQ-PVSVAIDASG 268
YK +C KK P + K G N+E A+ K + PV
Sbjct: 121 GSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY- 179
Query: 269 SDFQFYSSGVFTGQCGTELD-HGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRD 327
DF Y SG++ G L H + +G+G ++ YWL+ NSW WGENGY R+ R
Sbjct: 180 EDFLNYKSGIYKHITGETLGGHAIRIIGWGV-ENKAPYWLIANSWNEDWGENGYFRIVRG 238
Query: 328 ID 329
D
Sbjct: 239 RD 240
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 110/253 (43%), Gaps = 46/253 (18%)
Query: 124 ENASVPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAMEG--INHITTRKLTSLSE 177
E+ ++P S D W + ++DQG CG CWAF AV AM H R +S
Sbjct: 3 EDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSA 62
Query: 178 QELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PY------------ 218
++L+ C GC GG A+ F + KGL + Y PY
Sbjct: 63 EDLLTCCGIQCGDGCNGGYPSGAWNFW-TRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGA 121
Query: 219 ------KASDGSCNKK-EANPSAA----KISGYEDVP-SNNEAALMKAV-ANQPVSVAID 265
+ CNK EA S + K GY S++E +M + N PV A
Sbjct: 122 RPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFT 181
Query: 266 ASGSDFQFYSSGVFTGQCGTELD-HGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRM 324
SDF Y SGV+ + G + H + +G+G ++G YWLV NSW WG+NG+ ++
Sbjct: 182 VF-SDFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKI 239
Query: 325 QRDIDAKEGLCGI 337
R E CGI
Sbjct: 240 LR----GENHCGI 248
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 31/223 (13%)
Query: 126 ASVPASIDWRKKGAV---TGVKDQG---QCGCCWAFSAVAAMEGINHITTR---KLTSLS 176
A +P S DWR V + ++Q CG CWA ++ +AM +I + T LS
Sbjct: 34 ADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLS 93
Query: 177 EQELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNK--------- 227
Q ++DC +G CEGG +++ G+ E Y+A D C+K
Sbjct: 94 VQNVIDCGNAGS---CEGGNDLSVWDYA-HQHGIPDETCNNYQAKDQECDKFNQCGTCNE 149
Query: 228 -KEA----NPSAAKISGYEDVPSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTG- 281
KE N + ++ Y + S E + + AN P+S I A+ Y+ G++
Sbjct: 150 FKECHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMAT-ERLANYTGGIYAEY 207
Query: 282 QCGTELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRM 324
Q T ++H V+ G+G +D GT+YW+V+NSWG WGE G++R+
Sbjct: 208 QDTTYINHVVSVAGWGISD-GTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 107/249 (42%), Gaps = 46/249 (18%)
Query: 128 VPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAMEG--INHITTRKLTSLSEQELV 181
+P S D W + ++DQG CG CWAF AV AM H R +S ++L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 182 DCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PY---------------- 218
C GC GG A+ F + KGL + Y PY
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNF-WTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 119
Query: 219 --KASDGSCNKK-EANPSAA----KISGYEDVP-SNNEAALMKAV-ANQPVSVAIDASGS 269
+ CNK EA S + K GY S++E +M + N PV A S
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF-S 178
Query: 270 DFQFYSSGVFTGQCGTEL-DHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDI 328
DF Y SGV+ + G + H + +G+G ++G YWLV NSW WG+NG+ ++ R
Sbjct: 179 DFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG- 236
Query: 329 DAKEGLCGI 337
E CGI
Sbjct: 237 ---ENHCGI 242
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 130/312 (41%), Gaps = 56/312 (17%)
Query: 74 NNKARNKPYKLGINEFADQTNEEFRAPRNGYKRRLPSVRSSETT---------DVSFRYE 124
++K P + + ++ N ++A RN Y + ++ T V F E
Sbjct: 1 HDKPSFHPLSDDMINYINKQNTTWQAGRNFYNVDISYLKKLCGTVLGGPKLPERVGFS-E 59
Query: 125 NASVPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAMEG--INHITTRKLTSLSEQ 178
+ ++P S D W + ++DQG CG WAF AV AM H R +S +
Sbjct: 60 DINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAE 119
Query: 179 ELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PY------------- 218
+L+ C GC GG A+ F + KGL + Y PY
Sbjct: 120 DLLTCCGIQCGDGCNGGYPSGAWNFW-TRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGAR 178
Query: 219 -----KASDGSCNKK-EANPSAA----KISGYEDVP-SNNEAALMKAV-ANQPVSVAIDA 266
+ CNK EA S + K GY S++E +M + N PV A
Sbjct: 179 PPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTV 238
Query: 267 SGSDFQFYSSGVFTGQCGTELD-HGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQ 325
SDF Y SGV+ + G + H + +G+G ++G YWLV NSW WG+NG+ ++
Sbjct: 239 F-SDFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKIL 296
Query: 326 RDIDAKEGLCGI 337
R E CGI
Sbjct: 297 R----GENHCGI 304
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 31/221 (14%)
Query: 128 VPASIDWRKKGAV---TGVKDQG---QCGCCWAFSAVAAMEGINHITTRKL---TSLSEQ 178
+P S DWR V + ++Q CG CWA ++ +AM +I + T LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 179 ELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNK----------K 228
++DC +G CEGG +++ G+ E Y+A D C+K K
Sbjct: 61 NVIDCGNAGS---CEGGNDLSVWDYA-HQHGIPDETCNNYQAKDQECDKFNQCGTCNEFK 116
Query: 229 EA----NPSAAKISGYEDVPSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTG-QC 283
E N + ++ Y + S E + + AN P+S I A+ Y+ G++ Q
Sbjct: 117 ECHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMAT-ERLANYTGGIYAEYQD 174
Query: 284 GTELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRM 324
T ++H V+ G+G +D GT+YW+V+NSWG WGE G++R+
Sbjct: 175 TTYINHVVSVAGWGISD-GTEYWIVRNSWGEPWGERGWLRI 214
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 38/233 (16%)
Query: 126 ASVPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAM-EGINHITTRKLTSLSEQEL 180
A +P+S D W + + DQ CG CWA +A +AM + + + +S +L
Sbjct: 92 APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 151
Query: 181 VDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEAN--PSAAKIS 238
+ C + D GC GG D A+ + S+ GL ++ PY S + K N P ++ +
Sbjct: 152 LACCSDCGD-GCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFN 209
Query: 239 GYEDVPSNNEAA------------------------LMKAVANQPVSVAIDASGSDFQFY 274
D P N + + P VA D DF Y
Sbjct: 210 --FDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAY 266
Query: 275 SSGVFTGQCGTELD-HGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQR 326
+SGV+ G L H V VG+GT++ G YW + NSW T WG +GY ++R
Sbjct: 267 NSGVYHHVSGQYLGGHAVRLVGWGTSN-GVPYWKIANSWNTEWGMDGYFLIRR 318
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 100/233 (42%), Gaps = 38/233 (16%)
Query: 126 ASVPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAM-EGINHITTRKLTSLSEQEL 180
A +P+S D W + + DQ CG CWA +A +AM + + + +S +L
Sbjct: 69 APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 128
Query: 181 VDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEAN--PSAAKIS 238
+ C + D GC GG D A+ + S+ GL ++ PY S + K N P ++ +
Sbjct: 129 LACCSDCGD-GCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFN 186
Query: 239 GYEDVPSNNEAA------------------------LMKAVANQPVSVAIDASGSDFQFY 274
D P N + + P VA D DF Y
Sbjct: 187 --FDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAY 243
Query: 275 SSGVFTGQCGTELD-HGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQR 326
+SGV+ G L H V VG+GT++ G YW + NSW T WG +GY ++R
Sbjct: 244 NSGVYHHVSGQYLGGHAVRLVGWGTSN-GVPYWKIANSWNTEWGMDGYFLIRR 295
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 104/249 (41%), Gaps = 46/249 (18%)
Query: 128 VPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAMEG--INHITTRKLTSLSEQELV 181
+P S D W + ++DQG CG CWAF AV A+ H R +S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 182 DCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PY---------KASDGSC 225
C GC GG A+ F + KGL + Y PY S C
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNF-WTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 226 NKKEANPSAAKISGYEDVPS---------------NNEAALMKAV-ANQPVSVAIDASGS 269
+ P +K PS NNE +M + N PV A S
Sbjct: 120 TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVY-S 178
Query: 270 DFQFYSSGVFTGQCGTEL-DHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDI 328
DF Y SGV+ G + H + +G+G ++GT YWLV NSW T WG+NG+ ++ R
Sbjct: 179 DFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQ 237
Query: 329 DAKEGLCGI 337
D CGI
Sbjct: 238 DH----CGI 242
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 100/231 (43%), Gaps = 34/231 (14%)
Query: 126 ASVPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAM-EGINHITTRKLTSLSEQEL 180
A +P+S D W + + DQ CG CWA +A +AM + + + +S +L
Sbjct: 70 APLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDL 129
Query: 181 VDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEAN--------- 231
+ C + D GC GG D A+ + S+ GL ++ PY S + K N
Sbjct: 130 LACCSDCGD-GCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFN 187
Query: 232 ---PSAAKISGYEDVPSNN-----------EAALMKAVANQ-PVSVAIDASGSDFQFYSS 276
P +P N E M+ + + P VA D DF Y+S
Sbjct: 188 FDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNS 246
Query: 277 GVFTGQCGTELD-HGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQR 326
GV+ G L H V VG+GT++ G YW + NSW T WG +GY ++R
Sbjct: 247 GVYHHVSGQYLGGHAVRLVGWGTSN-GVPYWKIANSWNTEWGMDGYFLIRR 296
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 104/249 (41%), Gaps = 46/249 (18%)
Query: 128 VPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAMEG--INHITTRKLTSLSEQELV 181
+P S D W + ++DQG CG CWAF AV A+ H R +S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 182 DCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PY---------KASDGSC 225
C GC GG A+ F + KGL + Y PY S C
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNF-WTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 226 NKKEANPSAAKISGYEDVPS---------------NNEAALMKAV-ANQPVSVAIDASGS 269
+ P +K PS NNE +M + N PV A S
Sbjct: 120 TGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVY-S 178
Query: 270 DFQFYSSGVFTGQCGTEL-DHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDI 328
DF Y SGV+ G + H + +G+G ++GT YWLV NSW T WG+NG+ ++ R
Sbjct: 179 DFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 237
Query: 329 DAKEGLCGI 337
D CGI
Sbjct: 238 DH----CGI 242
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 26/168 (15%)
Query: 128 VPASIDWRKKGA---VTGVKDQGQCGCCWAFSAVAAMEGINHITTR--KLTSLSEQELVD 182
+P S DWR V+ V++Q CG C++F+++ +E I T + LS QE+V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 183 CDTSGEDQGCEGGLMDDAFEFIISNK-----GLATEAKYPYKASDGSCNKKE-----ANP 232
C S QGCEGG F ++I+ K GL EA +PY +D C KE +
Sbjct: 61 C--SQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSS 113
Query: 233 SAAKISGYEDVPSNNEAAL-MKAVANQPVSVAIDASGSDFQFYSSGVF 279
+ G+ NEA + ++ V + P++VA + DF Y G++
Sbjct: 114 EYHYVGGFYG--GCNEALMKLELVHHGPMAVAFEVY-DDFLHYKKGIY 158
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 85/196 (43%), Gaps = 40/196 (20%)
Query: 175 LSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PYK-------- 219
+S ++L+ C S GC GG +A+ F + KGL + Y PY
Sbjct: 5 VSAEDLLTCCGSMCGDGCNGGYPAEAWNFW-TRKGLVSGGLYESHVGCRPYSIPPCEHHV 63
Query: 220 -ASDGSCNKKEANPSAAKIS--------------GYEDVP-SNNEAALMKAV-ANQPVSV 262
S C + P +KI GY SN+E +M + N PV
Sbjct: 64 NGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEG 123
Query: 263 AIDASGSDFQFYSSGVFTGQCGTELD-HGVTAVGYGTADDGTKYWLVKNSWGTTWGENGY 321
A SDF Y SGV+ G + H + +G+G ++GT YWLV NSW T WG+NG+
Sbjct: 124 AFSVY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGF 181
Query: 322 IRMQRDIDAKEGLCGI 337
++ R D CGI
Sbjct: 182 FKILRGQDH----CGI 193
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 86/215 (40%), Gaps = 33/215 (15%)
Query: 143 VKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFE 202
V+DQG C W F++ +E I + + T +S + +C C+ G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 203 FIISNKG-LATEAKYPY----------KASD--------GSCNKKEANPSAAKISGYEDV 243
II + G L E+ YPY K D G + P++ GY
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 244 PS----NNEAALMKAVANQ-----PVSVAIDASGSDFQFYSSGVFTGQCGTEL-DHGVTA 293
S +N A +K + + V I A +S CG + DH V
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVNI 203
Query: 294 VGYG--TADDGTK--YWLVKNSWGTTWGENGYIRM 324
VGYG +G K YW+V+NSWG WG+ GY ++
Sbjct: 204 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 86/215 (40%), Gaps = 33/215 (15%)
Query: 143 VKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFE 202
V+DQG C W F++ +E I + + T +S + +C C+ G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 203 FIISNKG-LATEAKYPY----------KASD--------GSCNKKEANPSAAKISGYEDV 243
II + G L E+ YPY K D G + P++ GY
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 244 PS----NNEAALMKAVANQ-----PVSVAIDASGSDFQFYSSGVFTGQCGTEL-DHGVTA 293
S +N A +K + + V I A +S CG + DH V
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNI 204
Query: 294 VGYG--TADDGTK--YWLVKNSWGTTWGENGYIRM 324
VGYG +G K YW+V+NSWG WG+ GY ++
Sbjct: 205 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 288 DHGVTAVGYGT-ADDGTKYWLVKNSWGTTWGENGYIRMQRDID 329
+H V VGYGT + G YW+VKNSWGT WGENGY R++R D
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD 52
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 304 KYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345
KYWLVKNSWG WG GY++M +D + CGIA ASYPT
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 41
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 84/204 (41%), Gaps = 46/204 (22%)
Query: 170 RKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY-------PYKASD 222
R +S ++++ C GC GG A+ F + KGL + Y PY S
Sbjct: 1 RVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNF-WTKKGLVSGGLYNSHVGCRPY--SI 57
Query: 223 GSCNKKEANPSAAKISGYEDVP---------------------------SNNEAALMKAV 255
C + N S +G D P +NNE +M +
Sbjct: 58 PPC-EHHVNGSRPPCTGEGDTPKCNKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEI 116
Query: 256 -ANQPVSVAIDASGSDFQFYSSGVFTGQCGTEL-DHGVTAVGYGTADDGTKYWLVKNSWG 313
N PV A SDF Y SGV+ G + H + +G+G ++GT YWLV NSW
Sbjct: 117 YKNGPVEGAFSVY-SDFLLYKSGVYQHVSGEIMGGHAIRILGWG-VENGTPYWLVGNSWN 174
Query: 314 TTWGENGYIRMQRDIDAKEGLCGI 337
T WG+NG+ ++ R D CGI
Sbjct: 175 TDWGDNGFFKILRGQDH----CGI 194
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 32 DATMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGINEFAD 91
+A + + A Y + Y EK+ R+ IFK N+ YI + N + + Y L +N F D
Sbjct: 18 EAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYS--YSLKMNHFGD 75
Query: 92 QTNEEFRAPRNGYKR 106
+ +EFR G+K+
Sbjct: 76 LSRDEFRRKYLGFKK 90
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 101/259 (38%), Gaps = 48/259 (18%)
Query: 98 RAPRNGYKRRLPSVRSSETTDVSFRYEN---ASVPASIDWRKKGAVTGVKDQGQCGCCWA 154
R ++GY +P + ++ D S+ E A++P +D V DQG+ G C A
Sbjct: 27 RRKKSGYGY-IPDI--ADIRDFSYTPEKSVIAALPPKVDLTPPFQVY---DQGRIGSCTA 80
Query: 155 FSAVAAME--------GINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIIS 206
+ AA++ I +R +E+++ G G ++ D + ++
Sbjct: 81 NALAAAIQFERIHDKQSPEFIPSRLFIYYNERKI-----EGHVNYDSGAMIRDGIK-VLH 134
Query: 207 NKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVANQPVSVAID- 265
G+ E ++PY + +E P A D +A K V+ ID
Sbjct: 135 KLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQ-CYKDAQNYKITEYSRVAQDIDH 193
Query: 266 -----ASGSDFQF----YSSGVFTGQCGTELD-----------HGVTAVGYGTADDGTKY 305
A GS F F Y+S V + H V VGY DD ++
Sbjct: 194 LKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGY---DDEIRH 250
Query: 306 WLVKNSWGTTWGENGYIRM 324
+ ++NSWG GE+GY M
Sbjct: 251 FRIRNSWGNNVGEDGYFWM 269
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 128 VPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAM 161
+PAS D W + + ++DQG CG CWAF AV A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 36.2 bits (82), Expect = 0.025, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 128 VPASID----WRKKGAVTGVKDQGQCGCCWAFSAVAAM 161
+P S D W + ++DQG CG CWAF AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 288 DHGVTAVGYGTADDGTKYWLVKNSWGTTWGENG 320
DHG G +G +Y+ VKNSWGT NG
Sbjct: 317 DHGXQIYGIAKDQEGNEYYXVKNSWGTNSKYNG 349
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 136 KKGAVTGVKDQGQCGCCWAFSAVAAME 162
K+ +T VK+Q + G CW +S+ + +E
Sbjct: 18 KENPITSVKNQNRAGTCWCYSSYSFLE 44
>pdb|1FJR|A Chain A, Crystal Structure Of The Ectodomain Of Methuselah
pdb|1FJR|B Chain B, Crystal Structure Of The Ectodomain Of Methuselah
Length = 195
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 29 TLNDATMNERH---------EMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNN-KAR 78
TL+D +++ RH ++ M G Y DN E++ ++ +F EN + F+ R
Sbjct: 101 TLDDGSVSRRHFKNELIVQWDLPMPCDGMFYLDNREEQDKYTLF-ENGTFFRHFDRVTLR 159
Query: 79 NKPYKLGINEFADQTNEEFR-APRN 102
+ Y L FAD R AP N
Sbjct: 160 KREYCLQHLTFADGNATSIRIAPHN 184
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 40 EMWMAQYGRVYRDNAEKE---MRFKIFKENVEYIASFNNKARNKP--YKLGINEFADQTN 94
E W+ +Y + N E E MR +I+ E+ I N K +K+GIN AD T
Sbjct: 8 EEWV-EYKSKFDKNYEAEEDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 95 EEFRAPRNGYK 105
EEF A R+G K
Sbjct: 67 EEF-AQRSGKK 76
>pdb|2PZX|A Chain A, Structure Of The Methuselah Ectodomain With Peptide
Inhibitor
pdb|2PZX|B Chain B, Structure Of The Methuselah Ectodomain With Peptide
Inhibitor
pdb|2PZX|C Chain C, Structure Of The Methuselah Ectodomain With Peptide
Inhibitor
pdb|2PZX|D Chain D, Structure Of The Methuselah Ectodomain With Peptide
Inhibitor
Length = 188
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 29 TLNDATMNERH---------EMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNN-KAR 78
TL+D +++ RH ++ M G Y DN E++ ++ +F EN + F+ R
Sbjct: 101 TLDDGSVSRRHFKNELIVQWDLPMPCDGMFYLDNREEQDKYTLF-ENGTFFRHFDRVTLR 159
Query: 79 NKPYKLGINEFADQTNEEFR-APRN 102
+ Y L FAD R AP N
Sbjct: 160 KREYCLQHLTFADGNATSIRIAPHN 184
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D
Length = 375
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 28 RTLNDATMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIA---------SFNNKAR 78
R L D M + + G + AE+E+ I KE + Y+A + ++ A
Sbjct: 183 RDLTDYLMK-----ILTERGYSFTTTAEREIVRDI-KEKLCYVALDFEQEMHTAASSSAL 236
Query: 79 NKPYKLGINEFADQTNEEFRAPRNGYKRRLPSVRSSETTDVSFRYENASVPASIDWRK 136
K Y+L + NE FRAP ++ PS E+ + N+ + +D RK
Sbjct: 237 EKSYELPDGQVITIGNERFRAPEALFQ---PSFLGMESAGIHETTYNSIMKCDVDIRK 291
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 287 LDHGVTAVGYGTADD---GTKYWLVKNSWGTTWGENGYIRM 324
+ H +T DD W V+NSWG G GY+ M
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCM 409
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 287 LDHGVTAVGYGTADD---GTKYWLVKNSWGTTWGENGYIRM 324
+ H +T DD W V+NSWG G GY+ M
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCM 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,586,804
Number of Sequences: 62578
Number of extensions: 450451
Number of successful extensions: 1420
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 133
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)