Query 042468
Match_columns 346
No_of_seqs 312 out of 1852
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 8.8E-84 1.9E-88 574.4 25.0 297 34-345 66-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 3.8E-79 8.2E-84 570.7 36.3 298 32-344 31-338 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 6.6E-79 1.4E-83 584.5 32.2 307 32-346 162-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 5.7E-77 1.2E-81 569.7 33.4 306 29-346 116-445 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 1.5E-70 3.4E-75 509.3 29.9 287 43-345 30-323 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 1.4E-58 3E-63 416.7 22.5 209 128-344 1-240 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 3.1E-58 6.7E-63 412.9 22.7 211 128-345 1-237 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 1.5E-57 3.2E-62 401.7 23.0 207 129-344 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 5.1E-57 1.1E-61 404.3 21.5 205 129-342 1-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 2.5E-56 5.5E-61 395.7 17.2 213 128-345 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 2.2E-54 4.8E-59 423.5 22.9 211 127-345 380-675 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 4.4E-54 9.5E-59 417.5 22.4 206 127-342 204-455 (548)
13 smart00645 Pept_C1 Papain fami 100.0 5.7E-51 1.2E-55 348.4 18.1 168 128-341 1-170 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 2.6E-47 5.6E-52 338.8 20.8 195 131-328 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 4.4E-46 9.4E-51 374.6 21.7 201 140-345 544-780 (1004)
16 KOG1544 Predicted cysteine pro 100.0 3E-44 6.5E-49 316.7 8.1 261 68-342 151-456 (470)
17 COG4870 Cysteine protease [Pos 100.0 7.2E-32 1.6E-36 244.3 8.1 197 127-329 98-315 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 3.5E-24 7.6E-29 204.5 13.9 181 141-327 55-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.7 6.2E-17 1.3E-21 155.0 14.3 181 141-327 56-400 (438)
20 PF08246 Inhibitor_I29: Cathep 99.7 4.3E-17 9.3E-22 113.3 7.1 58 39-97 1-58 (58)
21 smart00848 Inhibitor_I29 Cathe 99.5 1E-14 2.2E-19 101.0 5.6 57 39-96 1-57 (57)
22 COG3579 PepC Aminopeptidase C 99.0 2.9E-09 6.3E-14 96.1 9.9 67 257-325 310-400 (444)
23 KOG4128 Bleomycin hydrolases a 97.7 4.2E-05 9.1E-10 69.5 3.9 77 141-218 63-168 (457)
24 PF13529 Peptidase_C39_2: Pept 97.2 0.0062 1.4E-07 49.2 11.0 126 142-312 4-144 (144)
25 PF05543 Peptidase_C47: Stapho 96.0 0.097 2.1E-06 43.9 10.3 120 145-314 18-146 (175)
26 PF08127 Propeptide_C1: Peptid 95.9 0.0097 2.1E-07 37.6 3.1 36 67-106 3-38 (41)
27 PF14399 Transpep_BrtH: NlpC/p 91.2 0.6 1.3E-05 43.4 6.6 55 248-310 78-133 (317)
28 COG4990 Uncharacterized protei 83.7 3 6.5E-05 35.3 5.6 52 241-313 116-168 (195)
29 PF12385 Peptidase_C70: Papain 79.3 30 0.00064 28.8 9.7 38 247-299 97-135 (166)
30 PF09778 Guanylate_cyc_2: Guan 78.2 8.7 0.00019 33.6 6.8 59 247-310 112-180 (212)
31 cd02549 Peptidase_C39A A sub-f 72.8 13 0.00028 29.6 6.3 44 251-312 70-114 (141)
32 PF07172 GRP: Glycine rich pro 66.5 6.3 0.00014 29.9 2.8 20 1-20 1-20 (95)
33 cd00044 CysPc Calpains, domain 62.5 28 0.00061 32.4 7.1 29 286-314 234-263 (315)
34 PF04202 Mfp-3: Foot protein 3 54.3 8.1 0.00018 26.8 1.4 23 1-23 1-23 (71)
35 PF01640 Peptidase_C10: Peptid 49.8 73 0.0016 27.3 7.0 49 249-323 141-192 (192)
36 KOG4702 Uncharacterized conser 47.5 99 0.0021 21.9 6.0 32 37-69 29-60 (77)
37 PRK04561 tatA twin arginine tr 41.0 38 0.00082 24.3 3.1 44 1-51 1-44 (75)
38 CHL00038 psbL photosystem II p 37.2 50 0.0011 20.1 2.7 18 3-20 17-34 (38)
39 PF02419 PsbL: PsbL protein; 36.3 56 0.0012 19.9 2.8 18 3-20 16-33 (37)
40 PF15240 Pro-rich: Proline-ric 34.9 30 0.00064 29.4 2.1 18 10-27 3-20 (179)
41 PF15339 Afaf: Acrosome format 34.8 46 0.001 27.9 3.2 23 3-25 133-155 (200)
42 PRK14857 tatA twin arginine tr 33.7 43 0.00092 25.1 2.6 43 1-50 1-45 (90)
43 PF10717 ODV-E18: Occlusion-de 33.0 45 0.00098 24.4 2.5 17 7-23 33-49 (85)
44 PF15588 Imm7: Immunity protei 31.6 1.6E+02 0.0034 23.1 5.7 36 290-326 17-58 (115)
45 PRK00753 psbL photosystem II r 30.7 69 0.0015 19.6 2.6 18 3-20 18-35 (39)
46 smart00230 CysPc Calpain-like 29.2 88 0.0019 29.2 4.6 28 286-314 226-255 (318)
47 PRK00442 tatA twin arginine tr 28.9 69 0.0015 24.1 3.0 23 1-23 1-23 (92)
48 PRK00720 tatA twin arginine tr 26.7 92 0.002 22.6 3.2 22 1-22 1-22 (78)
49 PRK01833 tatA twin arginine tr 24.9 96 0.0021 22.3 3.0 46 1-53 1-46 (74)
50 PF10107 Endonuc_Holl: Endonuc 22.2 2.3E+02 0.005 23.5 5.1 19 32-50 21-39 (156)
51 PRK14859 tatA twin arginine tr 21.3 1.2E+02 0.0026 21.0 2.9 38 8-52 8-45 (63)
52 PRK03554 tatA twin arginine tr 21.3 1.1E+02 0.0024 22.8 2.8 19 4-22 4-22 (89)
53 COG4871 Uncharacterized protei 20.9 59 0.0013 27.1 1.5 16 142-157 135-152 (193)
54 PRK02958 tatA twin arginine tr 20.0 1.3E+02 0.0028 21.6 2.9 24 1-24 1-24 (73)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-84 Score=574.42 Aligned_cols=297 Identities=41% Similarity=0.752 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHcccCCCCCeEEecccCCCCChHHHhcccCCCcCC-CCccc
Q 042468 34 TMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGINEFADQTNEEFRAPRNGYKRR-LPSVR 112 (346)
Q Consensus 34 ~~~~~f~~~~~~~~k~Y~~~~e~~~R~~~f~~n~~~I~~~N~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~-~~~~~ 112 (346)
...+.|..|+.+|+|+|.+.+|...|+.+|+.|+..+++++. ....|.++|+|+|||||+|||++++++.+.. ....
T Consensus 66 ~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~-~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~- 143 (372)
T KOG1542|consen 66 GLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQE-NDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLP- 143 (372)
T ss_pred chHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhh-cCccccccCccchhhcCHHHHHHHhhccccccccCc-
Confidence 448899999999999999999999999999999999999998 3334899999999999999999998877652 1111
Q ss_pred CCCCcccccccCC-CCCCceeeccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHhcCCCccCChHHHhhhcCCCCCCC
Q 042468 113 SSETTDVSFRYEN-ASVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQG 191 (346)
Q Consensus 113 ~~~~~~~~~~~~~-~~lP~~~Dwr~~~~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~~~g 191 (346)
......+..+ ..||++||||++|.||||||||+||||||||+++++|++.+++++++++||||+|+||+.. ++|
T Consensus 144 ---~~~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~--d~g 218 (372)
T KOG1542|consen 144 ---GDAAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSC--DNG 218 (372)
T ss_pred ---cccccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCc--CCc
Confidence 1111111122 2899999999999999999999999999999999999999999999999999999999975 899
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCCCCcCCCC-CcCCCCCCCCceEeeeeEecCCChHHHHHHHHH-cCCeEEEEEccCc
Q 042468 192 CEGGLMDDAFEFIISNKGLATEAKYPYKASDG-SCNKKEANPSAAKISGYEDVPSNNEAALMKAVA-NQPVSVAIDASGS 269 (346)
Q Consensus 192 c~GG~~~~a~~~~~~~~G~~~e~~~PY~~~~~-~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv~v~~~~~~~ 269 (346)
|+||.+..|++|+++..|+..|++|||++..+ .|... .....+.|.+|..++ .++++|.+.|. +|||+|+|++.
T Consensus 219 C~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~-~~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~-- 294 (372)
T KOG1542|consen 219 CNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFD-KSKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAK-- 294 (372)
T ss_pred CCCCChhHHHHHHHHhCCccccccCCccccCCCccccc-hhhceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchH--
Confidence 99999999999988888999999999999887 89988 467889999999998 58999988888 79999999976
Q ss_pred cccccCCCeEeCC---CCCC-CCeEEEEEEeeccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccceee
Q 042468 270 DFQFYSSGVFTGQ---CGTE-LDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345 (346)
Q Consensus 270 ~f~~y~~gi~~~~---~~~~-~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~p~ 345 (346)
.++.|.+||..+. |+.. ++|||+|||||...-.++|||||||||++|||+||+|+.||. |.|||+++++-+.
T Consensus 295 ~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~----N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 295 PMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGS----NACGIADMVSSAA 370 (372)
T ss_pred HHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccc----cccccccchhhhh
Confidence 7999999999983 8754 999999999998743799999999999999999999999997 5699999988664
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=3.8e-79 Score=570.71 Aligned_cols=298 Identities=38% Similarity=0.712 Sum_probs=247.9
Q ss_pred hhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHcccCCCCCeEEecccCCCCChHHHhcccCCCcCCCCcc
Q 042468 32 DATMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGINEFADQTNEEFRAPRNGYKRRLPSV 111 (346)
Q Consensus 32 ~~~~~~~f~~~~~~~~k~Y~~~~e~~~R~~~f~~n~~~I~~~N~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~~~~ 111 (346)
...++.+|++|+++|+|+|.+.+|+..|+.||++|+++|++||+ .+.+|++|+|+|+|||+|||.+.+++........
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~--~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~ 108 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQA--RNPHARFGITKFFDLSEAEFAARYLNGAAYFAAA 108 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhc--cCCCeEEeccccccCCHHHHHHHhcCCCcccccc
Confidence 56788899999999999999988999999999999999999998 3569999999999999999998765321100000
Q ss_pred cCCCCccccccc--CCC-CCCceeeccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHhcCCCccCChHHHhhhcCCCC
Q 042468 112 RSSETTDVSFRY--ENA-SVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE 188 (346)
Q Consensus 112 ~~~~~~~~~~~~--~~~-~lP~~~Dwr~~~~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~ 188 (346)
.. ........ ... +||++||||++|.|+||||||.||||||||+++++|+++++++++.++||+|+|+||+..
T Consensus 109 ~~--~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~-- 184 (348)
T PTZ00203 109 KQ--HAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV-- 184 (348)
T ss_pred cc--cccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCC--
Confidence 00 00000111 122 689999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCChHHHHHHHHHh--CCCCCCCCCCCcCCCC---CcCCCCCCCCceEeeeeEecCCChHHHHHHHHH-cCCeEE
Q 042468 189 DQGCEGGLMDDAFEFIISN--KGLATEAKYPYKASDG---SCNKKEANPSAAKISGYEDVPSNNEAALMKAVA-NQPVSV 262 (346)
Q Consensus 189 ~~gc~GG~~~~a~~~~~~~--~G~~~e~~~PY~~~~~---~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv~v 262 (346)
+.||+||++..|++|+.++ +|+++|++|||.+.++ .|..........++.+|..++. ++++|+.+|+ +|||+|
T Consensus 185 ~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v 263 (348)
T PTZ00203 185 DNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISI 263 (348)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEE
Confidence 7899999999999999754 5789999999988765 5864322223567888888874 7788999998 699999
Q ss_pred EEEccCccccccCCCeEeCCCC-CCCCeEEEEEEeeccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccccc
Q 042468 263 AIDASGSDFQFYSSGVFTGQCG-TELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQA 341 (346)
Q Consensus 263 ~~~~~~~~f~~y~~gi~~~~~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~ 341 (346)
+|++. +|++|++|||.. |. ..++|||+|||||.+ +|++|||||||||++|||+|||||+|+. |.|||++.+
T Consensus 264 ~i~a~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~-~g~~YWiikNSWG~~WGe~GY~ri~rg~----n~Cgi~~~~ 335 (348)
T PTZ00203 264 AVDAS--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMT-GEVPYWVIKNSWGEDWGEKGYVRVTMGV----NACLLTGYP 335 (348)
T ss_pred EEEhh--hhcCccCceeec-cCCCCCCeEEEEEEEecC-CCceEEEEEcCCCCCcCcCceEEEEcCC----CcccccceE
Confidence 99985 799999999985 65 467999999999986 6889999999999999999999999986 459999777
Q ss_pred cee
Q 042468 342 SYP 344 (346)
Q Consensus 342 ~~p 344 (346)
+..
T Consensus 336 ~~~ 338 (348)
T PTZ00203 336 VSV 338 (348)
T ss_pred EEE
Confidence 654
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=6.6e-79 Score=584.52 Aligned_cols=307 Identities=37% Similarity=0.683 Sum_probs=256.8
Q ss_pred hhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHcccCCCCCeEEecccCCCCChHHHhcccCCCcCC--CC
Q 042468 32 DATMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGINEFADQTNEEFRAPRNGYKRR--LP 109 (346)
Q Consensus 32 ~~~~~~~f~~~~~~~~k~Y~~~~e~~~R~~~f~~n~~~I~~~N~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~--~~ 109 (346)
..+....|++|+.+|+|+|.+.+|+..|+.+|++|+++|++||+ ..+.+|++|+|+|+|||.|||++++++...+ ..
T Consensus 162 n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~-~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~ 240 (489)
T PTZ00021 162 NLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNN-KENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKS 240 (489)
T ss_pred ChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhc-cCCCCEEEeccccccCCHHHHHHHhcccccccccc
Confidence 35566789999999999999998999999999999999999997 4567999999999999999999877664321 00
Q ss_pred cccCCCC--c-c---cccccCCC-CCCceeeccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHhcCCCccCChHHHhh
Q 042468 110 SVRSSET--T-D---VSFRYENA-SVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVD 182 (346)
Q Consensus 110 ~~~~~~~--~-~---~~~~~~~~-~lP~~~Dwr~~~~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~~~~~lS~q~l~d 182 (346)
....... . . ........ ..|.+||||+.|.|+||||||.||||||||+++++|+++++++++.+.||+|+|+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVD 320 (489)
T PTZ00021 241 NGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVD 320 (489)
T ss_pred ccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhh
Confidence 0000000 0 0 00001111 24899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCCChHHHHHHHHHhCCCCCCCCCCCcCC-CCCcCCCCCCCCceEeeeeEecCCChHHHHHHHHH-cCCe
Q 042468 183 CDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKAS-DGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVA-NQPV 260 (346)
Q Consensus 183 c~~~~~~~gc~GG~~~~a~~~~~~~~G~~~e~~~PY~~~-~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv 260 (346)
|+.. +.||+||++..|+.|+.+++|+++|++|||.+. .+.|... .....++|.+|..++ +++|+++|+ .|||
T Consensus 321 Cs~~--n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~-~~~~~~~i~~y~~i~---~~~lk~al~~~GPV 394 (489)
T PTZ00021 321 CSFK--NNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNID-RCKEKYKIKSYVSIP---EDKFKEAIRFLGPI 394 (489)
T ss_pred hccC--CCCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccc-cccccceeeeEEEec---HHHHHHHHHhcCCe
Confidence 9864 789999999999999987889999999999987 4789755 344567899998886 467889998 6999
Q ss_pred EEEEEccCccccccCCCeEeCCCCCCCCeEEEEEEeeccC---------CCccEEEEEcCCCCCCCCCceEEEEecCCCC
Q 042468 261 SVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTAD---------DGTKYWLVKNSWGTTWGENGYIRMQRDIDAK 331 (346)
Q Consensus 261 ~v~~~~~~~~f~~y~~gi~~~~~~~~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~ 331 (346)
+|+|++. .+|++|++|||.++|+..++|||+|||||+++ .+.+|||||||||++|||+|||||+|+.+..
T Consensus 395 sv~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~ 473 (489)
T PTZ00021 395 SVSIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGL 473 (489)
T ss_pred EEEEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCC
Confidence 9999998 68999999999988987889999999999752 1257999999999999999999999997544
Q ss_pred CCCcccccccceeeC
Q 042468 332 EGLCGIAMQASYPTA 346 (346)
Q Consensus 332 ~~~Cgi~~~~~~p~~ 346 (346)
.|+|||++.++||++
T Consensus 474 ~n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 474 MKTCSLGTEAYVPLI 488 (489)
T ss_pred CCCCCCcccceeEec
Confidence 468999999999985
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=5.7e-77 Score=569.70 Aligned_cols=306 Identities=37% Similarity=0.654 Sum_probs=253.7
Q ss_pred cCChhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHcccCCCCCeEEecccCCCCChHHHhcccCCCcCCC
Q 042468 29 TLNDATMNERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGINEFADQTNEEFRAPRNGYKRRL 108 (346)
Q Consensus 29 ~~~~~~~~~~f~~~~~~~~k~Y~~~~e~~~R~~~f~~n~~~I~~~N~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~ 108 (346)
...+.+....|++|+++|+|+|.+.+|+..|+.+|++|++.|++||. +.+|++|+|+|+|||+|||.+++++...|.
T Consensus 116 ~~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~---~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~ 192 (448)
T PTZ00200 116 PKLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG---DEPYSKEINKFSDLTEEEFRKLFPVIKVPP 192 (448)
T ss_pred ccchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC---cCCeEEeccccccCCHHHHHHHhccCCCcc
Confidence 34456777899999999999999998999999999999999999996 468999999999999999998766543321
Q ss_pred Cccc--C----CC----Ccc--ccccc-----CC-----CCCCceeeccCCCCCCccCCCC-CCccHHHHHHHHHHHHHH
Q 042468 109 PSVR--S----SE----TTD--VSFRY-----EN-----ASVPASIDWRKKGAVTGVKDQG-QCGCCWAFSAVAAMEGIN 165 (346)
Q Consensus 109 ~~~~--~----~~----~~~--~~~~~-----~~-----~~lP~~~Dwr~~~~v~pV~dQg-~cgsCwAfA~~~~~e~~~ 165 (346)
.... . .. ... ...+. .. ..+|++||||+.|.|+|||||| .||||||||+++++|+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~ 272 (448)
T PTZ00200 193 KSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLY 272 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHH
Confidence 1000 0 00 000 00000 00 1269999999999999999999 999999999999999999
Q ss_pred HHhcCCCccCChHHHhhhcCCCCCCCCCCCChHHHHHHHHHhCCCCCCCCCCCcCCCCCcCCCCCCCCceEeeeeEecCC
Q 042468 166 HITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPS 245 (346)
Q Consensus 166 ~~~~~~~~~lS~q~l~dc~~~~~~~gc~GG~~~~a~~~~~~~~G~~~e~~~PY~~~~~~c~~~~~~~~~~~i~~~~~~~~ 245 (346)
+++++..+.||+|+|+||+.. +.||+||++..|++|+.++ |+++|++|||.+..+.|.... .....|.+|..++
T Consensus 273 ~i~~~~~~~LSeQqLvDC~~~--~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~- 346 (448)
T PTZ00200 273 KIYRDKSVDLSEQELVNCDTK--SQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK- 346 (448)
T ss_pred HHhcCCCeecCHHHHhhccCc--cCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCC--CCeeEecceEecC-
Confidence 999999999999999999864 7899999999999999755 999999999999999997652 2346688887664
Q ss_pred ChHHHHHHHHHcCCeEEEEEccCccccccCCCeEeCCCCCCCCeEEEEEEeecc-CCCccEEEEEcCCCCCCCCCceEEE
Q 042468 246 NNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTA-DDGTKYWLVKNSWGTTWGENGYIRM 324 (346)
Q Consensus 246 ~~~~~i~~~l~~gPv~v~~~~~~~~f~~y~~gi~~~~~~~~~~Hav~iVGyg~~-~~g~~ywivkNSWG~~WG~~Gy~~i 324 (346)
..+.+++++..|||+|+|++. .+|+.|++|||.++|+..++|||+|||||.+ ++|.+|||||||||++|||+|||||
T Consensus 347 -~~~~l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri 424 (448)
T PTZ00200 347 -GKDVLNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRL 424 (448)
T ss_pred -HHHHHHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEE
Confidence 345677777789999999998 6899999999998898779999999999964 3688999999999999999999999
Q ss_pred EecCCCCCCCcccccccceeeC
Q 042468 325 QRDIDAKEGLCGIAMQASYPTA 346 (346)
Q Consensus 325 ~~~~~~~~~~Cgi~~~~~~p~~ 346 (346)
+|+.. ..|.|||++.++||++
T Consensus 425 ~r~~~-g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 425 ERTNE-GTDKCGILTVGLTPVF 445 (448)
T ss_pred EeCCC-CCCcCCccccceeeEE
Confidence 99742 1367999999999974
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-70 Score=509.32 Aligned_cols=287 Identities=46% Similarity=0.831 Sum_probs=248.4
Q ss_pred HHHhCCccCChHHHHHHHHHHHHHHHHHHHHcccCCCCCeEEecccCCCCChHHHhcccCCCcCCCCcccCCCCcccccc
Q 042468 43 MAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGINEFADQTNEEFRAPRNGYKRRLPSVRSSETTDVSFR 122 (346)
Q Consensus 43 ~~~~~k~Y~~~~e~~~R~~~f~~n~~~I~~~N~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (346)
+.+|.+.|.+..|...|+.+|.+|++.|+.||. ....+|++++|+|+|++.+|++..+.+.+.+.. . .......
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~-~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~-~----~~~~~~~ 103 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNL-KYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEI-K----RDKFTEK 103 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhh-hhceeeeeccccccccchHHHHHhhccccCccc-c----ccccccc
Confidence 777888887778899999999999999999998 337899999999999999999998776655322 1 1011111
Q ss_pred cCCCCCCceeeccCCC-CCCccCCCCCCccHHHHHHHHHHHHHHHHhcC-CCccCChHHHhhhcCCCCCCCCCCCChHHH
Q 042468 123 YENASVPASIDWRKKG-AVTGVKDQGQCGCCWAFSAVAAMEGINHITTR-KLTSLSEQELVDCDTSGEDQGCEGGLMDDA 200 (346)
Q Consensus 123 ~~~~~lP~~~Dwr~~~-~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~-~~~~lS~q~l~dc~~~~~~~gc~GG~~~~a 200 (346)
....++|++||||+++ .++||||||.||||||||++++||++++|+++ .++.||+|+|+||... .+.||+||.+..|
T Consensus 104 ~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A 182 (325)
T KOG1543|consen 104 LDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNA 182 (325)
T ss_pred cchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHH
Confidence 1122799999999996 56669999999999999999999999999999 8999999999999987 6789999999999
Q ss_pred HHHHHHhCCCCC-CCCCCCcCCCCCcCCCCCCCCceEeeeeEecCCChHHHHHHHHH-cCCeEEEEEccCccccccCCCe
Q 042468 201 FEFIISNKGLAT-EAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVA-NQPVSVAIDASGSDFQFYSSGV 278 (346)
Q Consensus 201 ~~~~~~~~G~~~-e~~~PY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv~v~~~~~~~~f~~y~~gi 278 (346)
++|+.++ |+++ +..|||.+..+.|..... .....+.++..++.+ +++|+++|+ +|||+|+|++.. +|+.|++||
T Consensus 183 ~~yi~~~-G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~~GV 258 (325)
T KOG1543|consen 183 FKYIKKN-GGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYKGGV 258 (325)
T ss_pred HHHHHHh-CCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-hhhhccCce
Confidence 9999988 5555 999999999999998853 566778888888855 999999999 699999999994 999999999
Q ss_pred EeCCC-CC-CCCeEEEEEEeeccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccce-ee
Q 042468 279 FTGQC-GT-ELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASY-PT 345 (346)
Q Consensus 279 ~~~~~-~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~-p~ 345 (346)
|.+++ .. .++|||+|||||. .++.+|||||||||++|||+|||||.|+.++ |+|++.++| |+
T Consensus 259 y~~~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~----~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 259 YAEEKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNK----CGIASEASYGPI 323 (325)
T ss_pred EeCCCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCc----hhhhcccccCCC
Confidence 99994 44 5999999999999 6789999999999999999999999999864 999999999 75
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.4e-58 Score=416.67 Aligned_cols=209 Identities=37% Similarity=0.728 Sum_probs=178.5
Q ss_pred CCceeeccCCC----CCCccCCCCCCccHHHHHHHHHHHHHHHHhcCC------CccCChHHHhhhcCCCCCCCCCCCCh
Q 042468 128 VPASIDWRKKG----AVTGVKDQGQCGCCWAFSAVAAMEGINHITTRK------LTSLSEQELVDCDTSGEDQGCEGGLM 197 (346)
Q Consensus 128 lP~~~Dwr~~~----~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~~------~~~lS~q~l~dc~~~~~~~gc~GG~~ 197 (346)
||++||||+.+ +|+||||||.||||||||+++++|+++++++++ .+.||+|+|+||... +.||+||++
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~--~~GC~GG~~ 78 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY--SQGCDGGFP 78 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC--CCCCCCCCH
Confidence 79999999998 999999999999999999999999999998776 689999999999864 689999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCcC-CCCCcCCCCCCCCceEeeeeEecC----CChHHHHHHHHH-cCCeEEEEEccCccc
Q 042468 198 DDAFEFIISNKGLATEAKYPYKA-SDGSCNKKEANPSAAKISGYEDVP----SNNEAALMKAVA-NQPVSVAIDASGSDF 271 (346)
Q Consensus 198 ~~a~~~~~~~~G~~~e~~~PY~~-~~~~c~~~~~~~~~~~i~~~~~~~----~~~~~~i~~~l~-~gPv~v~~~~~~~~f 271 (346)
..+++|+.+. |+++|++|||.. ..+.|..........++..|..+. ..++++|+++|. +|||+++|++. ++|
T Consensus 79 ~~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F 156 (243)
T cd02621 79 FLVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDF 156 (243)
T ss_pred HHHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-ccc
Confidence 9999999755 999999999998 677887653123334444454432 247889999998 69999999998 689
Q ss_pred cccCCCeEeCC-----CCC---------CCCeEEEEEEeeccC-CCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcc
Q 042468 272 QFYSSGVFTGQ-----CGT---------ELDHGVTAVGYGTAD-DGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCG 336 (346)
Q Consensus 272 ~~y~~gi~~~~-----~~~---------~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cg 336 (346)
.+|++|||..+ |.. .++|||+|||||++. ++.+|||||||||++|||+|||||+|+. |.||
T Consensus 157 ~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~----~~cg 232 (243)
T cd02621 157 DFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT----NECG 232 (243)
T ss_pred cccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC----cccC
Confidence 99999999875 532 479999999999874 4889999999999999999999999986 3599
Q ss_pred ccccccee
Q 042468 337 IAMQASYP 344 (346)
Q Consensus 337 i~~~~~~p 344 (346)
|++.+++.
T Consensus 233 i~~~~~~~ 240 (243)
T cd02621 233 IESQAVFA 240 (243)
T ss_pred cccceEee
Confidence 99998653
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=3.1e-58 Score=412.93 Aligned_cols=211 Identities=29% Similarity=0.625 Sum_probs=180.5
Q ss_pred CCceeeccCCC---CCCccCCCC---CCccHHHHHHHHHHHHHHHHhcC---CCccCChHHHhhhcCCCCCCCCCCCChH
Q 042468 128 VPASIDWRKKG---AVTGVKDQG---QCGCCWAFSAVAAMEGINHITTR---KLTSLSEQELVDCDTSGEDQGCEGGLMD 198 (346)
Q Consensus 128 lP~~~Dwr~~~---~v~pV~dQg---~cgsCwAfA~~~~~e~~~~~~~~---~~~~lS~q~l~dc~~~~~~~gc~GG~~~ 198 (346)
||++||||+.+ +|+|||||| .||||||||++++||+++.++++ ..+.||+|+|+||+. +.||.||++.
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~~ 77 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDPG 77 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCHH
Confidence 69999999988 899999998 89999999999999999998765 357899999999986 6899999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCcCCCCCcCCCC--------------CCCCceEeeeeEecCCChHHHHHHHHH-cCCeEEE
Q 042468 199 DAFEFIISNKGLATEAKYPYKASDGSCNKKE--------------ANPSAAKISGYEDVPSNNEAALMKAVA-NQPVSVA 263 (346)
Q Consensus 199 ~a~~~~~~~~G~~~e~~~PY~~~~~~c~~~~--------------~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv~v~ 263 (346)
.+++|+.++ |+++|++|||......|.... .....+++.+|..++ ++++|+++|. +|||+++
T Consensus 78 ~a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~ 154 (239)
T cd02698 78 GVYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCG 154 (239)
T ss_pred HHHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEE
Confidence 999999865 999999999988766665310 012345677777775 5678888887 7999999
Q ss_pred EEccCccccccCCCeEeCC-CCCCCCeEEEEEEeeccCCCccEEEEEcCCCCCCCCCceEEEEecC-CCCCCCccccccc
Q 042468 264 IDASGSDFQFYSSGVFTGQ-CGTELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDI-DAKEGLCGIAMQA 341 (346)
Q Consensus 264 ~~~~~~~f~~y~~gi~~~~-~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~~~~~Cgi~~~~ 341 (346)
|.+. ++|..|++|||+.. |...++|||+|||||++.++++|||||||||++|||+|||||+|+. .+..+.|||++.+
T Consensus 155 i~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~ 233 (239)
T cd02698 155 IMAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDC 233 (239)
T ss_pred EEec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccce
Confidence 9998 58999999999887 5667899999999998744899999999999999999999999997 1112469999999
Q ss_pred ceee
Q 042468 342 SYPT 345 (346)
Q Consensus 342 ~~p~ 345 (346)
+|+.
T Consensus 234 ~~~~ 237 (239)
T cd02698 234 AWAD 237 (239)
T ss_pred EEEe
Confidence 9874
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1.5e-57 Score=401.74 Aligned_cols=207 Identities=60% Similarity=1.118 Sum_probs=187.8
Q ss_pred CceeeccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHhcCCCccCChHHHhhhcCCCCCCCCCCCChHHHHHHHHHhC
Q 042468 129 PASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNK 208 (346)
Q Consensus 129 P~~~Dwr~~~~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~~~gc~GG~~~~a~~~~~~~~ 208 (346)
|++||||+.+.++||+|||.||+|||||+++++|++++++++..+.||+|+|++|... .+.+|.||....+++++. +.
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~~-~~ 78 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYVK-NG 78 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHHH-HC
Confidence 7899999999999999999999999999999999999999998899999999999874 468999999999999886 45
Q ss_pred CCCCCCCCCCcCCCCCcCCCCCCCCceEeeeeEecCCChHHHHHHHHH-cCCeEEEEEccCccccccCCCeEeCC-C-CC
Q 042468 209 GLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVA-NQPVSVAIDASGSDFQFYSSGVFTGQ-C-GT 285 (346)
Q Consensus 209 G~~~e~~~PY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv~v~~~~~~~~f~~y~~gi~~~~-~-~~ 285 (346)
|+++|++|||......|... ......++.+|..++..+.++||++|+ +|||++++.+. ++|..|++|||..+ | ..
T Consensus 79 Gi~~e~~yPY~~~~~~C~~~-~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~ 156 (210)
T cd02248 79 GLASESDYPYTGKDGTCKYN-SSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNT 156 (210)
T ss_pred CcCccccCCccCCCCCccCC-CCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCC
Confidence 99999999999888889876 345678999999998667889999998 59999999998 68999999999987 4 35
Q ss_pred CCCeEEEEEEeeccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccccccee
Q 042468 286 ELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYP 344 (346)
Q Consensus 286 ~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~p 344 (346)
.++|||+|||||++ .+.+|||||||||++||++|||||+|+. +.|||++.+.||
T Consensus 157 ~~~Hav~iVGy~~~-~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 157 NLNHAVLLVGYGTE-NGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred cCCEEEEEEEEeec-CCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 78999999999987 5889999999999999999999999986 359999998887
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=5.1e-57 Score=404.31 Aligned_cols=205 Identities=37% Similarity=0.736 Sum_probs=172.4
Q ss_pred CceeeccCC--CCC--CccCCCCCCccHHHHHHHHHHHHHHHHhcC--CCccCChHHHhhhcCCCCCCCCCCCChHHHHH
Q 042468 129 PASIDWRKK--GAV--TGVKDQGQCGCCWAFSAVAAMEGINHITTR--KLTSLSEQELVDCDTSGEDQGCEGGLMDDAFE 202 (346)
Q Consensus 129 P~~~Dwr~~--~~v--~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~--~~~~lS~q~l~dc~~~~~~~gc~GG~~~~a~~ 202 (346)
|++||||++ +++ +||+|||.||||||||++++||+++.++++ +.+.||+|+|+||+.. .+.||+||++..+++
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~ 79 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWK 79 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHH
Confidence 889999996 454 599999999999999999999999999887 7789999999999864 468999999999999
Q ss_pred HHHHhCCCCCCCCCCCcCCCCC------------------cCCCCC---CCCceEeeeeEecCCChHHHHHHHHH-cCCe
Q 042468 203 FIISNKGLATEAKYPYKASDGS------------------CNKKEA---NPSAAKISGYEDVPSNNEAALMKAVA-NQPV 260 (346)
Q Consensus 203 ~~~~~~G~~~e~~~PY~~~~~~------------------c~~~~~---~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv 260 (346)
|+.++ |+++|++|||...... |..... .....++..+..+. .++++||.+|. +|||
T Consensus 80 ~i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv 157 (236)
T cd02620 80 YLTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPV 157 (236)
T ss_pred HHHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCe
Confidence 99865 9999999999876543 322211 11123445555555 47889999997 6999
Q ss_pred EEEEEccCccccccCCCeEeCCCC-CCCCeEEEEEEeeccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccc
Q 042468 261 SVAIDASGSDFQFYSSGVFTGQCG-TELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAM 339 (346)
Q Consensus 261 ~v~~~~~~~~f~~y~~gi~~~~~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~ 339 (346)
+++|.+. ++|+.|++|||..++. ..++|||+|||||++ ++++|||||||||++|||+|||||+|+. +.|||++
T Consensus 158 ~v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~-~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi~~ 231 (236)
T cd02620 158 QAAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVE-NGVPYWLAANSWGTDWGENGYFRILRGS----NECGIES 231 (236)
T ss_pred EEEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEecc-CCeeEEEEEeCCCCCCCCCcEEEEEccC----ccccccc
Confidence 9999997 7999999999987654 457899999999987 7899999999999999999999999986 4599999
Q ss_pred ccc
Q 042468 340 QAS 342 (346)
Q Consensus 340 ~~~ 342 (346)
.++
T Consensus 232 ~~~ 234 (236)
T cd02620 232 EVV 234 (236)
T ss_pred cee
Confidence 875
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=2.5e-56 Score=395.75 Aligned_cols=213 Identities=46% Similarity=0.883 Sum_probs=183.4
Q ss_pred CCceeeccCC-CCCCccCCCCCCccHHHHHHHHHHHHHHHHhc-CCCccCChHHHhhhcCCCCCCCCCCCChHHHHHHHH
Q 042468 128 VPASIDWRKK-GAVTGVKDQGQCGCCWAFSAVAAMEGINHITT-RKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFII 205 (346)
Q Consensus 128 lP~~~Dwr~~-~~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~-~~~~~lS~q~l~dc~~~~~~~gc~GG~~~~a~~~~~ 205 (346)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|.. ..+.+|+||++..|++++.
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~~~~ 79 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALKYIK 79 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccceeec
Confidence 7999999998 48999999999999999999999999999998 7889999999999997 2367999999999999999
Q ss_pred HhCCCCCCCCCCCcCCC-CCcCCCCCCCCceEeeeeEecCCChHHHHHHHHH-cCCeEEEEEccCccccccCCCeEeCC-
Q 042468 206 SNKGLATEAKYPYKASD-GSCNKKEANPSAAKISGYEDVPSNNEAALMKAVA-NQPVSVAIDASGSDFQFYSSGVFTGQ- 282 (346)
Q Consensus 206 ~~~G~~~e~~~PY~~~~-~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv~v~~~~~~~~f~~y~~gi~~~~- 282 (346)
++.|+++|++|||.... ..|..........++..|..+...+.++|+++|. +|||++++.+...+|..|++|||..+
T Consensus 80 ~~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~ 159 (219)
T PF00112_consen 80 NNNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPD 159 (219)
T ss_dssp HHTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTS
T ss_pred ccCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeeccc
Confidence 74699999999999877 6787653221247888999888667999999999 59999999999446999999999997
Q ss_pred CC-CCCCeEEEEEEeeccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccceee
Q 042468 283 CG-TELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345 (346)
Q Consensus 283 ~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~p~ 345 (346)
|. ..++|||+|||||++ .+++|||||||||++||++|||||+|+.+ ++|||++.++||+
T Consensus 160 ~~~~~~~Hav~iVGy~~~-~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 160 CSNESGGHAVLIVGYDDE-NGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp SSSSSEEEEEEEEEEEEE-TTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred cccccccccccccccccc-cceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 65 578999999999998 58999999999999999999999999985 3699999999996
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=2.2e-54 Score=423.45 Aligned_cols=211 Identities=29% Similarity=0.621 Sum_probs=175.3
Q ss_pred CCCceeeccCC----CCCCccCCCCCCccHHHHHHHHHHHHHHHHhcCC-----C-----ccCChHHHhhhcCCCCCCCC
Q 042468 127 SVPASIDWRKK----GAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRK-----L-----TSLSEQELVDCDTSGEDQGC 192 (346)
Q Consensus 127 ~lP~~~Dwr~~----~~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~~-----~-----~~lS~q~l~dc~~~~~~~gc 192 (346)
+||++||||+. +.++||+|||.||||||||+++++|++++|+++. . ..||+|+|+||+.. +.||
T Consensus 380 ~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~--nqGC 457 (693)
T PTZ00049 380 ELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY--DQGC 457 (693)
T ss_pred cCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC--CCCc
Confidence 89999999984 6799999999999999999999999999998642 1 27999999999864 7899
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCCCCcCCCCCcCCCCCC--------------------------------------CCc
Q 042468 193 EGGLMDDAFEFIISNKGLATEAKYPYKASDGSCNKKEAN--------------------------------------PSA 234 (346)
Q Consensus 193 ~GG~~~~a~~~~~~~~G~~~e~~~PY~~~~~~c~~~~~~--------------------------------------~~~ 234 (346)
+||.+..|++|+.+. ||++|++|||.+..+.|...... ..+
T Consensus 458 ~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 536 (693)
T PTZ00049 458 NGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPAR 536 (693)
T ss_pred CCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999765 99999999999887778542110 112
Q ss_pred eEeeeeEecC-------CChHHHHHHHHH-cCCeEEEEEccCccccccCCCeEeCC-------CCC--------------
Q 042468 235 AKISGYEDVP-------SNNEAALMKAVA-NQPVSVAIDASGSDFQFYSSGVFTGQ-------CGT-------------- 285 (346)
Q Consensus 235 ~~i~~~~~~~-------~~~~~~i~~~l~-~gPv~v~~~~~~~~f~~y~~gi~~~~-------~~~-------------- 285 (346)
+.+++|..+. ..++++|+.+|. +|||+|+|++. ++|++|++|||..+ |..
T Consensus 537 ~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~ 615 (693)
T PTZ00049 537 WYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGW 615 (693)
T ss_pred eeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCcccccccccccccc
Confidence 3345565553 246788998888 79999999998 68999999999852 531
Q ss_pred -CCCeEEEEEEeeccC-CCc--cEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccceee
Q 042468 286 -ELDHGVTAVGYGTAD-DGT--KYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASYPT 345 (346)
Q Consensus 286 -~~~Hav~iVGyg~~~-~g~--~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~p~ 345 (346)
.++|||+|||||.+. +|. +|||||||||+.||++|||||.|+. |.|||++.++|+.
T Consensus 616 e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~----N~CGIEs~a~~~~ 675 (693)
T PTZ00049 616 EKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK----NFSGIESQSLFIE 675 (693)
T ss_pred ccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC----CccCCccceeEEe
Confidence 368999999999753 453 7999999999999999999999997 4599999999875
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=4.4e-54 Score=417.54 Aligned_cols=206 Identities=24% Similarity=0.546 Sum_probs=173.5
Q ss_pred CCCceeeccCCC---CCCccCCCCC---CccHHHHHHHHHHHHHHHHhcC------CCccCChHHHhhhcCCCCCCCCCC
Q 042468 127 SVPASIDWRKKG---AVTGVKDQGQ---CGCCWAFSAVAAMEGINHITTR------KLTSLSEQELVDCDTSGEDQGCEG 194 (346)
Q Consensus 127 ~lP~~~Dwr~~~---~v~pV~dQg~---cgsCwAfA~~~~~e~~~~~~~~------~~~~lS~q~l~dc~~~~~~~gc~G 194 (346)
+||++||||+.| +|+||||||. ||||||||+++++|++++++++ ..+.||+|+|+||+.. +.||+|
T Consensus 204 ~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~--n~GCdG 281 (548)
T PTZ00364 204 PPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY--GQGCAG 281 (548)
T ss_pred CCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC--CCCCCC
Confidence 799999999987 7999999999 9999999999999999999873 4688999999999864 789999
Q ss_pred CChHHHHHHHHHhCCCCCCCCC--CCcCCCC---CcCCCCCCCCceEeee------eEecCCChHHHHHHHHH-cCCeEE
Q 042468 195 GLMDDAFEFIISNKGLATEAKY--PYKASDG---SCNKKEANPSAAKISG------YEDVPSNNEAALMKAVA-NQPVSV 262 (346)
Q Consensus 195 G~~~~a~~~~~~~~G~~~e~~~--PY~~~~~---~c~~~~~~~~~~~i~~------~~~~~~~~~~~i~~~l~-~gPv~v 262 (346)
|++..|++|+.++ |+++|++| ||.+.++ .|.... ....+++.. |..+. .++++|+.+|+ +|||+|
T Consensus 282 G~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~-~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVsV 358 (548)
T PTZ00364 282 GFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRR-PSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVPA 358 (548)
T ss_pred CcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCc-ccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeEE
Confidence 9999999999755 99999999 9987655 486542 233333433 44343 46788998888 699999
Q ss_pred EEEccCccccccCCCeEeC---------CC-----------CCCCCeEEEEEEeeccCCCccEEEEEcCCCC--CCCCCc
Q 042468 263 AIDASGSDFQFYSSGVFTG---------QC-----------GTELDHGVTAVGYGTADDGTKYWLVKNSWGT--TWGENG 320 (346)
Q Consensus 263 ~~~~~~~~f~~y~~gi~~~---------~~-----------~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~--~WG~~G 320 (346)
+|++. .+|..|++|||.+ .| ...++|||+|||||.+++|.+|||||||||+ +|||+|
T Consensus 359 aIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~G 437 (548)
T PTZ00364 359 SVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGG 437 (548)
T ss_pred EEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCC
Confidence 99998 6899999998762 11 1357999999999986578899999999999 999999
Q ss_pred eEEEEecCCCCCCCcccccccc
Q 042468 321 YIRMQRDIDAKEGLCGIAMQAS 342 (346)
Q Consensus 321 y~~i~~~~~~~~~~Cgi~~~~~ 342 (346)
||||+|+.| .|||++.++
T Consensus 438 YfRI~RG~N----~CGIes~~v 455 (548)
T PTZ00364 438 TRKIARGVN----AYNIESEVV 455 (548)
T ss_pred eEEEEcCCC----cccccceee
Confidence 999999974 599999887
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=5.7e-51 Score=348.39 Aligned_cols=168 Identities=63% Similarity=1.159 Sum_probs=148.9
Q ss_pred CCceeeccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHhcCCCccCChHHHhhhcCCCCCCCCCCCChHHHHHHHHHh
Q 042468 128 VPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISN 207 (346)
Q Consensus 128 lP~~~Dwr~~~~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~~~gc~GG~~~~a~~~~~~~ 207 (346)
||++||||+.++++||+|||.||+|||||+++++|++++++++..++||+|+|++|... .+.||.||.+..|++|+.++
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~~~~~ 79 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEYIKKN 79 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999998999999999999875 45699999999999999865
Q ss_pred CCCCCCCCCCCcCCCCCcCCCCCCCCceEeeeeEecCCChHHHHHHHHHcCCeEEEEEccCccccccCCCeEeCC-CCC-
Q 042468 208 KGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVANQPVSVAIDASGSDFQFYSSGVFTGQ-CGT- 285 (346)
Q Consensus 208 ~G~~~e~~~PY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~gPv~v~~~~~~~~f~~y~~gi~~~~-~~~- 285 (346)
.|+++|++|||.. ++.+.+. +|..|++|||+.+ |..
T Consensus 80 ~Gi~~e~~~PY~~----------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~~~~ 117 (174)
T smart00645 80 GGLETESCYPYTG----------------------------------------SVAIDAS--DFQFYKSGIYDHPGCGSG 117 (174)
T ss_pred CCcccccccCccc----------------------------------------EEEEEcc--cccCCcCeEECCCCCCCC
Confidence 5999999999975 5555554 5999999999885 764
Q ss_pred CCCeEEEEEEeeccCCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCccccccc
Q 042468 286 ELDHGVTAVGYGTADDGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQA 341 (346)
Q Consensus 286 ~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~ 341 (346)
.++|||+|||||.+.++++|||||||||+.||++|||||.|+.. +.|||+...
T Consensus 118 ~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~---~~c~i~~~~ 170 (174)
T smart00645 118 TLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKN---NECGIEASV 170 (174)
T ss_pred cccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCC---CccCceeee
Confidence 47999999999976468899999999999999999999999862 359995543
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=2.6e-47 Score=338.77 Aligned_cols=195 Identities=34% Similarity=0.561 Sum_probs=167.6
Q ss_pred eeeccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHhcC--CCccCChHHHhhhcCCCC---CCCCCCCChHHHHH-HH
Q 042468 131 SIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTR--KLTSLSEQELVDCDTSGE---DQGCEGGLMDDAFE-FI 204 (346)
Q Consensus 131 ~~Dwr~~~~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~--~~~~lS~q~l~dc~~~~~---~~gc~GG~~~~a~~-~~ 204 (346)
.+|||+.+ ++||+|||.||+|||||+++++|++++++++ ..++||+|+|++|..... ..+|.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999998 9999999999999999999999999999987 889999999999987532 37999999999998 66
Q ss_pred HHhCCCCCCCCCCCcCCCCCcCCC---CCCCCceEeeeeEecCCChHHHHHHHHH-cCCeEEEEEccCccccccCCCeEe
Q 042468 205 ISNKGLATEAKYPYKASDGSCNKK---EANPSAAKISGYEDVPSNNEAALMKAVA-NQPVSVAIDASGSDFQFYSSGVFT 280 (346)
Q Consensus 205 ~~~~G~~~e~~~PY~~~~~~c~~~---~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv~v~~~~~~~~f~~y~~gi~~ 280 (346)
. ..|+++|++|||......|... .......++..|..+...++++||++|. .|||++++.+. ..|..|++|++.
T Consensus 80 ~-~~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~ 157 (223)
T cd02619 80 A-LKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIY 157 (223)
T ss_pred H-HcCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCcccc
Confidence 5 5699999999999877766532 1234567889999888777899999998 59999999998 789999999873
Q ss_pred -----CC-C-CCCCCeEEEEEEeeccC-CCccEEEEEcCCCCCCCCCceEEEEecC
Q 042468 281 -----GQ-C-GTELDHGVTAVGYGTAD-DGTKYWLVKNSWGTTWGENGYIRMQRDI 328 (346)
Q Consensus 281 -----~~-~-~~~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~ 328 (346)
.. + ...++|||+|||||++. .+++|||||||||+.||++||+||+++.
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 22 2 34689999999999873 2789999999999999999999999985
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=4.4e-46 Score=374.60 Aligned_cols=201 Identities=25% Similarity=0.509 Sum_probs=159.8
Q ss_pred CCccCCCCCCccHHHHHHHHHHHHHHHHhcCCCccCChHHHhhhcCCCCCCCCCCCC-hHHHHHHHHHhCCCCCCCCCCC
Q 042468 140 VTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGEDQGCEGGL-MDDAFEFIISNKGLATEAKYPY 218 (346)
Q Consensus 140 v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~~~gc~GG~-~~~a~~~~~~~~G~~~e~~~PY 218 (346)
..||||||.||+|||||+++++|++++++++..+.||+|+|+||+....+.||.||+ +..++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 579999999999999999999999999999999999999999998765578999997 5556688877767899999999
Q ss_pred cC--CCCCcCCCCCC-----------------CCceEeeeeEecCCC----h----HHHHHHHHH-cCCeEEEEEccCcc
Q 042468 219 KA--SDGSCNKKEAN-----------------PSAAKISGYEDVPSN----N----EAALMKAVA-NQPVSVAIDASGSD 270 (346)
Q Consensus 219 ~~--~~~~c~~~~~~-----------------~~~~~i~~~~~~~~~----~----~~~i~~~l~-~gPv~v~~~~~~~~ 270 (346)
.. ..+.|+..... .....+.+|..+... + +++|+.+|+ .|||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 45678643110 112334556555421 1 467888898 59999999986 6
Q ss_pred ccccC-CCeEeCC-CC-CCCCeEEEEEEeecc----CCCccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccce
Q 042468 271 FQFYS-SGVFTGQ-CG-TELDHGVTAVGYGTA----DDGTKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQASY 343 (346)
Q Consensus 271 f~~y~-~gi~~~~-~~-~~~~Hav~iVGyg~~----~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~~ 343 (346)
|+.|. +|||... |+ ..++|||+|||||.+ .++++|||||||||+.|||+|||||.|... +.|||+....+
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~---n~CGin~i~t~ 778 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGP---SHCEDNFIHSV 778 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCC---CCCccchheee
Confidence 88884 8987665 87 457999999999974 136789999999999999999999999532 45999887777
Q ss_pred ee
Q 042468 344 PT 345 (346)
Q Consensus 344 p~ 345 (346)
|+
T Consensus 779 ~~ 780 (1004)
T PTZ00462 779 VI 780 (1004)
T ss_pred ee
Confidence 65
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=3e-44 Score=316.69 Aligned_cols=261 Identities=29% Similarity=0.544 Sum_probs=205.0
Q ss_pred HHHHHHcccCCCCCeEEe-cccCCCCChHHHhcccCCCcCCCCcccCCCCccccc--ccCC-CCCCceeeccCC--CCCC
Q 042468 68 EYIASFNNKARNKPYKLG-INEFADQTNEEFRAPRNGYKRRLPSVRSSETTDVSF--RYEN-ASVPASIDWRKK--GAVT 141 (346)
Q Consensus 68 ~~I~~~N~~~~~~s~~~g-~N~FsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~lP~~~Dwr~~--~~v~ 141 (346)
++|+++|. ++.+|.++ +.+|-.||.++-.+..+|..+|..... ..+.. ...+ ..||+.||-|++ +++.
T Consensus 151 d~iE~in~--G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~----nMNEi~~~l~p~~~LPE~F~As~KWp~liH 224 (470)
T KOG1544|consen 151 DMIEAINQ--GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVM----NMNEIYTVLNPGEVLPEAFEASEKWPNLIH 224 (470)
T ss_pred HHHHHHhc--CCccccccchhhhhcccccccceeeecccCchhhhh----hHHhHhhccCcccccchhhhhhhcCCcccc
Confidence 57899998 88899886 669999999998888888877654331 11111 1112 279999999997 8899
Q ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHhcC-C-CccCChHHHhhhcCCCCCCCCCCCChHHHHHHHHHhCCCCCCCCCCCc
Q 042468 142 GVKDQGQCGCCWAFSAVAAMEGINHITTR-K-LTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKYPYK 219 (346)
Q Consensus 142 pV~dQg~cgsCwAfA~~~~~e~~~~~~~~-~-~~~lS~q~l~dc~~~~~~~gc~GG~~~~a~~~~~~~~G~~~e~~~PY~ 219 (346)
|+.|||+|++.|||+++++...+++|.+. + ...||+|+|++|... ...||+||....|+-|+.+. |++...+|||.
T Consensus 225 ~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h-~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~ 302 (470)
T KOG1544|consen 225 EPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTH-QQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFS 302 (470)
T ss_pred CccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhh-hhccCccCcccchheeeecc-ccccccccccc
Confidence 99999999999999999999999988863 3 467999999999875 46899999999999999765 99999999997
Q ss_pred CC----CCCcCCCC------------------CC-CCceEeeeeEecCCChHHHHHHHHH-cCCeEEEEEccCccccccC
Q 042468 220 AS----DGSCNKKE------------------AN-PSAAKISGYEDVPSNNEAALMKAVA-NQPVSVAIDASGSDFQFYS 275 (346)
Q Consensus 220 ~~----~~~c~~~~------------------~~-~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv~v~~~~~~~~f~~y~ 275 (346)
.. .+.|.... .+ ...++++.-..|+ .++++|++.|. +|||.+.|.|. ++|..|+
T Consensus 303 ~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVS-SnE~eImkElM~NGPVQA~m~VH-EDFF~Yk 380 (470)
T KOG1544|consen 303 GDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVS-SNEKEIMKELMENGPVQALMEVH-EDFFLYK 380 (470)
T ss_pred CCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeecc-CCHHHHHHHHHhCCChhhhhhhh-hhhhhhc
Confidence 52 22343211 11 1223333333444 56777777777 89999999998 8999999
Q ss_pred CCeEeCCCC---------CCCCeEEEEEEeeccC--CC--ccEEEEEcCCCCCCCCCceEEEEecCCCCCCCcccccccc
Q 042468 276 SGVFTGQCG---------TELDHGVTAVGYGTAD--DG--TKYWLVKNSWGTTWGENGYIRMQRDIDAKEGLCGIAMQAS 342 (346)
Q Consensus 276 ~gi~~~~~~---------~~~~Hav~iVGyg~~~--~g--~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~~Cgi~~~~~ 342 (346)
+|||.+... ..+.|+|.|.|||.+. +| .+|||..||||+.|||+|||||.|+.|+ |-|+++.+
T Consensus 381 gGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNe----cdIEsfvI 456 (470)
T KOG1544|consen 381 GGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNE----CDIESFVI 456 (470)
T ss_pred cceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccc----hhhhHhhh
Confidence 999988621 2578999999999863 33 4699999999999999999999999864 99998764
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.2e-32 Score=244.27 Aligned_cols=197 Identities=26% Similarity=0.427 Sum_probs=133.0
Q ss_pred CCCceeeccCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHhcCCCccCChHHHh-----hhcCCCCCCCCCCCChHHHH
Q 042468 127 SVPASIDWRKKGAVTGVKDQGQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELV-----DCDTSGEDQGCEGGLMDDAF 201 (346)
Q Consensus 127 ~lP~~~Dwr~~~~v~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~~~~~lS~q~l~-----dc~~~~~~~gc~GG~~~~a~ 201 (346)
.+|+.||||+.|.|+||||||.||+|||||+++++|+.+.-.. ...+|+..+. -|.....-..-+||....+.
T Consensus 98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~ 175 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSA 175 (372)
T ss_pred cchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCcccccc
Confidence 7899999999999999999999999999999999999765433 3344444332 22221111113477777777
Q ss_pred HHHHHhCCCCCCCCCCCcCCCCCcCCCCCCCCceEeeeeEecCCC----hHHHHHHHHH-cCCeEEE--EEccCcccccc
Q 042468 202 EFIISNKGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSN----NEAALMKAVA-NQPVSVA--IDASGSDFQFY 274 (346)
Q Consensus 202 ~~~~~~~G~~~e~~~PY~~~~~~c~~~~~~~~~~~i~~~~~~~~~----~~~~i~~~l~-~gPv~v~--~~~~~~~f~~y 274 (346)
.|+.+..|.+.|.+-||......|....+ ...++..-..++.. +.-.|++++. .|-+... |++. .+...
T Consensus 176 a~l~e~sgpv~et~d~y~~~s~~~~~~~p--~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~--~~~~~ 251 (372)
T COG4870 176 AYLTEWSGPVYETDDPYSENSYFSPTNLP--VTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDAT--NSLGI 251 (372)
T ss_pred ccccccCCcchhhcCccccccccCCcCCc--hhhccccceecccchhhhcccchHHHHhhhccccceeEEecc--ccccc
Confidence 88888999999999999887666654321 11222222223211 2223566665 4654433 4444 22222
Q ss_pred CCCeEeCCCCCCCCeEEEEEEeeccC---------CCccEEEEEcCCCCCCCCCceEEEEecCC
Q 042468 275 SSGVFTGQCGTELDHGVTAVGYGTAD---------DGTKYWLVKNSWGTTWGENGYIRMQRDID 329 (346)
Q Consensus 275 ~~gi~~~~~~~~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~Gy~~i~~~~~ 329 (346)
.-+.+........+|||+|||||+.. .|.++||||||||++||++|||||++...
T Consensus 252 ~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya 315 (372)
T COG4870 252 CIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYA 315 (372)
T ss_pred ccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeec
Confidence 22333333336789999999999852 46789999999999999999999999764
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.91 E-value=3.5e-24 Score=204.53 Aligned_cols=181 Identities=24% Similarity=0.384 Sum_probs=128.3
Q ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHh-cCCCccCChHHHhhhcCC--------------------------CCCCCCC
Q 042468 141 TGVKDQGQCGCCWAFSAVAAMEGINHIT-TRKLTSLSEQELVDCDTS--------------------------GEDQGCE 193 (346)
Q Consensus 141 ~pV~dQg~cgsCwAfA~~~~~e~~~~~~-~~~~~~lS~q~l~dc~~~--------------------------~~~~gc~ 193 (346)
.||+||+.-|.||.||+...+++..... +.+.+.||+.++...++- ......+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999977764 556899999988652210 0245678
Q ss_pred CCChHHHHHHHHHhCCCCCCCCCCCcCCC---------------------------CC----------------------
Q 042468 194 GGLMDDAFEFIISNKGLATEAKYPYKASD---------------------------GS---------------------- 224 (346)
Q Consensus 194 GG~~~~a~~~~~~~~G~~~e~~~PY~~~~---------------------------~~---------------------- 224 (346)
||....+...+. ++|+++.+.||-+... +.
T Consensus 135 GGqw~m~~~li~-KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIE-KYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHH-HcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999886 5699999999853210 00
Q ss_pred cCCCCCC----------------------------------------------CC---ce-----------EeeeeEecC
Q 042468 225 CNKKEAN----------------------------------------------PS---AA-----------KISGYEDVP 244 (346)
Q Consensus 225 c~~~~~~----------------------------------------------~~---~~-----------~i~~~~~~~ 244 (346)
|--.++. .+ .+ +...|..++
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 0000000 00 00 001122232
Q ss_pred CChHHHHH----HHHHc-CCeEEEEEccCccccccCCCeEeCC----------------------CCCCCCeEEEEEEee
Q 042468 245 SNNEAALM----KAVAN-QPVSVAIDASGSDFQFYSSGVFTGQ----------------------CGTELDHGVTAVGYG 297 (346)
Q Consensus 245 ~~~~~~i~----~~l~~-gPv~v~~~~~~~~f~~y~~gi~~~~----------------------~~~~~~Hav~iVGyg 297 (346)
.+.++ ++|.. +||.+++++. .|..|++||+... +....+|||+|||||
T Consensus 294 ---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 294 ---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 33343 56665 5999999997 4679999999653 123468999999999
Q ss_pred ccCCCc-cEEEEEcCCCCCCCCCceEEEEec
Q 042468 298 TADDGT-KYWLVKNSWGTTWGENGYIRMQRD 327 (346)
Q Consensus 298 ~~~~g~-~ywivkNSWG~~WG~~Gy~~i~~~ 327 (346)
.+.+|+ .||+||||||+.||++||++|+++
T Consensus 369 ~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 876676 699999999999999999999875
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.72 E-value=6.2e-17 Score=154.99 Aligned_cols=181 Identities=26% Similarity=0.407 Sum_probs=106.6
Q ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHhcC-CCccCChHHHhh----------------hcCC----------CCCCCCC
Q 042468 141 TGVKDQGQCGCCWAFSAVAAMEGINHITTR-KLTSLSEQELVD----------------CDTS----------GEDQGCE 193 (346)
Q Consensus 141 ~pV~dQg~cgsCwAfA~~~~~e~~~~~~~~-~~~~lS~q~l~d----------------c~~~----------~~~~gc~ 193 (346)
.||.||..-|.||.||+...++..+..+.+ +.+.||+.++.- +... ......+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 499999999999999999999998877765 679999998752 2211 0124568
Q ss_pred CCChHHHHHHHHHhCCCCCCCCCCCcCCC---------------------------------------------------
Q 042468 194 GGLMDDAFEFIISNKGLATEAKYPYKASD--------------------------------------------------- 222 (346)
Q Consensus 194 GG~~~~a~~~~~~~~G~~~e~~~PY~~~~--------------------------------------------------- 222 (346)
||....+..-+. ++|+++.+.||-....
T Consensus 136 GGqw~~~~nli~-KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIK-KYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHH-HH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHH-HcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888776 5599999999854300
Q ss_pred --CCcCCCC-----CCCCce-Ee--------------------------------------------------eeeEecC
Q 042468 223 --GSCNKKE-----ANPSAA-KI--------------------------------------------------SGYEDVP 244 (346)
Q Consensus 223 --~~c~~~~-----~~~~~~-~i--------------------------------------------------~~~~~~~ 244 (346)
+.++..- .....+ +. ..|..+|
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 0000000 000000 00 0122222
Q ss_pred CChHHHH----HHHHHcC-CeEEEEEccCccccccCCCeEeCCC-------C---------------CCCCeEEEEEEee
Q 042468 245 SNNEAAL----MKAVANQ-PVSVAIDASGSDFQFYSSGVFTGQC-------G---------------TELDHGVTAVGYG 297 (346)
Q Consensus 245 ~~~~~~i----~~~l~~g-Pv~v~~~~~~~~f~~y~~gi~~~~~-------~---------------~~~~Hav~iVGyg 297 (346)
.+.| .++|..| ||-.+-+|. . +...+.||++... + +..+|||+|||.+
T Consensus 295 ---id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~ 369 (438)
T PF03051_consen 295 ---IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVD 369 (438)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEE
Confidence 3333 4456667 999999997 3 4566888875531 0 1248999999999
Q ss_pred ccCCCc-cEEEEEcCCCCCCCCCceEEEEec
Q 042468 298 TADDGT-KYWLVKNSWGTTWGENGYIRMQRD 327 (346)
Q Consensus 298 ~~~~g~-~ywivkNSWG~~WG~~Gy~~i~~~ 327 (346)
.+.+|+ .+|+|+||||+..|.+||+.|+.+
T Consensus 370 ~D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 370 LDEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp E-TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred eccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 977787 599999999999999999999853
No 20
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.70 E-value=4.3e-17 Score=113.25 Aligned_cols=58 Identities=45% Similarity=0.790 Sum_probs=51.6
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHcccCCCCCeEEecccCCCCChHHH
Q 042468 39 HEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGINEFADQTNEEF 97 (346)
Q Consensus 39 f~~~~~~~~k~Y~~~~e~~~R~~~f~~n~~~I~~~N~~~~~~s~~~g~N~FsD~t~eEf 97 (346)
|++|+++|+|+|.+.+|+..|+.+|++|++.|.+||+ .++.+|++|+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~-~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNA-NGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHH-TTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhc-CCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999999999999994 578999999999999999997
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.54 E-value=1e-14 Score=101.00 Aligned_cols=57 Identities=46% Similarity=0.871 Sum_probs=53.3
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHcccCCCCCeEEecccCCCCChHH
Q 042468 39 HEMWMAQYGRVYRDNAEKEMRFKIFKENVEYIASFNNKARNKPYKLGINEFADQTNEE 96 (346)
Q Consensus 39 f~~~~~~~~k~Y~~~~e~~~R~~~f~~n~~~I~~~N~~~~~~s~~~g~N~FsD~t~eE 96 (346)
|++|+.+|+|.|.+.+|...|+.+|.+|++.|..||+ .+..+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~-~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNK-KNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHh-cCCCCeEecCcccccCCCCC
Confidence 6899999999999999999999999999999999998 45689999999999999886
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.98 E-value=2.9e-09 Score=96.12 Aligned_cols=67 Identities=24% Similarity=0.506 Sum_probs=51.8
Q ss_pred cC-CeEEEEEccCccccccCCCeEeCC-C------C---------------CCCCeEEEEEEeeccCCCcc-EEEEEcCC
Q 042468 257 NQ-PVSVAIDASGSDFQFYSSGVFTGQ-C------G---------------TELDHGVTAVGYGTADDGTK-YWLVKNSW 312 (346)
Q Consensus 257 ~g-Pv~v~~~~~~~~f~~y~~gi~~~~-~------~---------------~~~~Hav~iVGyg~~~~g~~-ywivkNSW 312 (346)
.| ||=.+-++. .+..-+.||.... - + +-..|||+|.|.+.+++|.+ -|.|.|||
T Consensus 310 agetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~g~p~rwkVENSW 387 (444)
T COG3579 310 AGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDETGNPLRWKVENSW 387 (444)
T ss_pred cCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccCCCceeeEeeccc
Confidence 46 899888886 5777777775432 0 0 11379999999998877654 69999999
Q ss_pred CCCCCCCceEEEE
Q 042468 313 GTTWGENGYIRMQ 325 (346)
Q Consensus 313 G~~WG~~Gy~~i~ 325 (346)
|.+=|.+|||-++
T Consensus 388 G~d~G~~GyfvaS 400 (444)
T COG3579 388 GKDVGKKGYFVAS 400 (444)
T ss_pred ccccCCCceEeeh
Confidence 9999999999876
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.65 E-value=4.2e-05 Score=69.46 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=53.4
Q ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHhc-CCCccCChHHHhhhcCC----------------------------CCCCC
Q 042468 141 TGVKDQGQCGCCWAFSAVAAMEGINHITT-RKLTSLSEQELVDCDTS----------------------------GEDQG 191 (346)
Q Consensus 141 ~pV~dQg~cgsCwAfA~~~~~e~~~~~~~-~~~~~lS~q~l~dc~~~----------------------------~~~~g 191 (346)
+||.||.+-|-||.|+.+..+---+..+- =..+.||..+|+-.++- ..+..
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 69999999999999999988754333322 23567888777433210 11334
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCCCC
Q 042468 192 CEGGLMDDAFEFIISNKGLATEAKYPY 218 (346)
Q Consensus 192 c~GG~~~~a~~~~~~~~G~~~e~~~PY 218 (346)
-+||....-+..++ ++|+.+..+||-
T Consensus 143 ~DGGqw~MfvNlVk-KYGviPKkcy~~ 168 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVK-KYGVIPKKCYLH 168 (457)
T ss_pred CCCchHHHHHHHHH-HhCCCcHHhccc
Confidence 57888877777665 569999999964
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.18 E-value=0.0062 Score=49.17 Aligned_cols=126 Identities=20% Similarity=0.270 Sum_probs=58.7
Q ss_pred ccCCC--CCCccHHHHHHHHHHHHHHHHhcCCCccCChHHHhhhcCCCC----C--------CCCCCCChHHHHHHHHHh
Q 042468 142 GVKDQ--GQCGCCWAFSAVAAMEGINHITTRKLTSLSEQELVDCDTSGE----D--------QGCEGGLMDDAFEFIISN 207 (346)
Q Consensus 142 pV~dQ--g~cgsCwAfA~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~----~--------~gc~GG~~~~a~~~~~~~ 207 (346)
|...| ..-..|+..|++-++... +. ..++.+|.+-..... . .....|.....+..+.+.
T Consensus 4 p~~~Q~~~~~~~Cg~as~~mvl~~~-----g~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (144)
T PF13529_consen 4 PYYSQYDETSYGCGPASAAMVLNYY-----GK--NISQEDLADEAGTNPDGDPNTGFVGNPYYDSGYGTSPDDLARYLEK 76 (144)
T ss_dssp -----TTT-TT-HHHHHHHHHHHHT-----T------HHHHHHHS-EE-E--TTTSEEB-SSTS-B----HHHHHHHHHH
T ss_pred CcEEeCCCCCCcCHHHHHHHHHHHc-----CC--CCCHHHHHHHhhhccCCCCCcccccCccccCCCccccHHHHHHHHH
Confidence 44556 455669999988888765 22 578888877554311 0 011123333343333333
Q ss_pred CCCCCCCCCCCcCCCCCcCCCCCCCCceEeeeeEecCCChHHHHHHHHHcC-CeEEEEEccCccccccCCCeEeCCCCCC
Q 042468 208 KGLATEAKYPYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVANQ-PVSVAIDASGSDFQFYSSGVFTGQCGTE 286 (346)
Q Consensus 208 ~G~~~e~~~PY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~g-Pv~v~~~~~~~~f~~y~~gi~~~~~~~~ 286 (346)
+|. ........+.+.|++.|.+| ||.+.+....... ..+.+ ....
T Consensus 77 ~~~----------------------------~~~~~~~~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~---~~~~ 122 (144)
T PF13529_consen 77 YGY----------------------------KATDTSDASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGY---DGTY 122 (144)
T ss_dssp H-T----------------------------TEEE-TTS-HHHHHHHHHTT--EEEEEETTSS-----TTEEE---EE-T
T ss_pred cCc----------------------------ceeeccCCcHHHHHHHHHCCCcEEEEEEcccccC---CCCCc---CCCc
Confidence 343 00111224668889999976 9999997431111 11111 1245
Q ss_pred CCeEEEEEEeeccCCCccEEEEEcCC
Q 042468 287 LDHGVTAVGYGTADDGTKYWLVKNSW 312 (346)
Q Consensus 287 ~~Hav~iVGyg~~~~g~~ywivkNSW 312 (346)
.+|.|+|+||+.+ + +++|-.+|
T Consensus 123 ~~H~vvi~Gy~~~--~--~~~v~DP~ 144 (144)
T PF13529_consen 123 GGHYVVIIGYDED--G--YVYVNDPW 144 (144)
T ss_dssp TEEEEEEEEE-SS--E---EEEE-TT
T ss_pred CCEEEEEEEEeCC--C--EEEEeCCC
Confidence 7899999999853 2 78888777
No 25
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.01 E-value=0.097 Score=43.93 Aligned_cols=120 Identities=18% Similarity=0.335 Sum_probs=69.0
Q ss_pred CCCCCccHHHHHHHHHHHHHHHH--------hcCCCccCChHHHhhhcCCCCCCCCCCCChHHHHHHHHHhCCCCCCCCC
Q 042468 145 DQGQCGCCWAFSAVAAMEGINHI--------TTRKLTSLSEQELVDCDTSGEDQGCEGGLMDDAFEFIISNKGLATEAKY 216 (346)
Q Consensus 145 dQg~cgsCwAfA~~~~~e~~~~~--------~~~~~~~lS~q~l~dc~~~~~~~gc~GG~~~~a~~~~~~~~G~~~e~~~ 216 (346)
.||.-+=|-+||.+++|-+.... .+.-...+|+++|..++. .+...++|.... |....
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~----------~~~~~i~y~ks~-g~~~~--- 83 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL----------TPNQMIKYAKSQ-GRNPQ--- 83 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B-----------HHHHHHHHHHT-TEEEE---
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC----------CHHHHHHHHHHc-Ccchh---
Confidence 58999999999999988764211 112245678888876643 345778886543 53210
Q ss_pred CCcCCCCCcCCCCCCCCceEeeeeEecCCChHHHHHHHHH-cCCeEEEEEccCccccccCCCeEeCCCCCCCCeEEEEEE
Q 042468 217 PYKASDGSCNKKEANPSAAKISGYEDVPSNNEAALMKAVA-NQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVG 295 (346)
Q Consensus 217 PY~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~gPv~v~~~~~~~~f~~y~~gi~~~~~~~~~~Hav~iVG 295 (346)
| .... .+.+++++.+. +-|+.+..+..+. ..+...+||++|||
T Consensus 84 -~---------------------~n~~--~s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAlavvG 127 (175)
T PF05543_consen 84 -Y---------------------NNRM--PSFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHALAVVG 127 (175)
T ss_dssp -E---------------------ECS-----HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEEEEEE
T ss_pred -H---------------------hcCC--CCHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeEEEEe
Confidence 0 0011 14677788887 4688776654411 12345789999999
Q ss_pred eeccCCCccEEEEEcCCCC
Q 042468 296 YGTADDGTKYWLVKNSWGT 314 (346)
Q Consensus 296 yg~~~~g~~ywivkNSWG~ 314 (346)
|-...+|.++.++=|=|-.
T Consensus 128 ya~~~~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 128 YAKPNNGQKTYYFWNPWWN 146 (175)
T ss_dssp EEEETTSEEEEEEE-TT-S
T ss_pred eeecCCCCeEEEEeCCccC
Confidence 9876578899999998854
No 26
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=95.92 E-value=0.0097 Score=37.64 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=22.8
Q ss_pred HHHHHHHcccCCCCCeEEecccCCCCChHHHhcccCCCcC
Q 042468 67 VEYIASFNNKARNKPYKLGINEFADQTNEEFRAPRNGYKR 106 (346)
Q Consensus 67 ~~~I~~~N~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~ 106 (346)
-++|+.+|+ .+.+|++|.| |.+.+.+.++.+ +|..+
T Consensus 3 de~I~~IN~--~~~tWkAG~N-F~~~~~~~ik~L-lGv~~ 38 (41)
T PF08127_consen 3 DEFIDYINS--KNTTWKAGRN-FENTSIEYIKRL-LGVLP 38 (41)
T ss_dssp HHHHHHHHH--CT-SEEE-----SSB-HHHHHHC-S-B-T
T ss_pred HHHHHHHHc--CCCcccCCCC-CCCCCHHHHHHH-cCCCC
Confidence 468999998 4889999999 899999998875 55543
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=91.17 E-value=0.6 Score=43.44 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=36.0
Q ss_pred HHHHHHHHHcC-CeEEEEEccCccccccCCCeEeCCCCCCCCeEEEEEEeeccCCCccEEEEEc
Q 042468 248 EAALMKAVANQ-PVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWLVKN 310 (346)
Q Consensus 248 ~~~i~~~l~~g-Pv~v~~~~~~~~f~~y~~gi~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkN 310 (346)
.+.|+++|.+| ||.+.++.+ +..|...-| .....+|.|+|+||+++ ++.+.++-.
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~---~~~~~~H~i~v~G~d~~--~~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYY---KKHHADHYIVVYGYDEE--EDVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCcccc---ccccCCcEEEEEEEeCC--CCEEEEEcC
Confidence 45677888877 999998876 333333222 12346899999999864 345556543
No 28
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.73 E-value=3 Score=35.26 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=36.6
Q ss_pred EecCCChHHHHHHHHHcC-CeEEEEEccCccccccCCCeEeCCCCCCCCeEEEEEEeeccCCCccEEEEEcCCC
Q 042468 241 EDVPSNNEAALMKAVANQ-PVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWLVKNSWG 313 (346)
Q Consensus 241 ~~~~~~~~~~i~~~l~~g-Pv~v~~~~~~~~f~~y~~gi~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG 313 (346)
..++..+..+|+..|..| ||.+-..... . ..-|+|+|+|||+. ++..-++||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~~~----~------------~s~H~v~itgyDk~-----n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTNFH----S------------YSIHSVLITGYDKY-----NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEeccc----c------------cceeeeEeeccccc-----ceEeccccc
Confidence 345557889999999865 9987664431 1 34699999999853 456667775
No 29
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=79.33 E-value=30 Score=28.80 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=27.7
Q ss_pred hHHHHHHHHH-cCCeEEEEEccCccccccCCCeEeCCCCCCCCeEEEEEEeecc
Q 042468 247 NEAALMKAVA-NQPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTA 299 (346)
Q Consensus 247 ~~~~i~~~l~-~gPv~v~~~~~~~~f~~y~~gi~~~~~~~~~~Hav~iVGyg~~ 299 (346)
+.+.+...|. +||+-++..... +.-..|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~---------------~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPG---------------DSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC---------------CcceeeEEEEEeecCC
Confidence 4577888888 799999865542 2234799999998764
No 30
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=78.23 E-value=8.7 Score=33.62 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=34.1
Q ss_pred hHHHHHHHHHc-CCeEEEEEccCcccc--ccCCCeEeC---C----CCCCCCeEEEEEEeeccCCCccEEEEEc
Q 042468 247 NEAALMKAVAN-QPVSVAIDASGSDFQ--FYSSGVFTG---Q----CGTELDHGVTAVGYGTADDGTKYWLVKN 310 (346)
Q Consensus 247 ~~~~i~~~l~~-gPv~v~~~~~~~~f~--~y~~gi~~~---~----~~~~~~Hav~iVGyg~~~~g~~ywivkN 310 (346)
+.++|...|.. ||+.+-++.. ... .-+...... . .....+|-|+|+||+.. .+-+++||
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~---~~~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA---TKEFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCccEEEEEEEeecCC---CCeEEEeC
Confidence 56788888885 5766666654 121 002222111 1 12467999999999864 23355565
No 31
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=72.78 E-value=13 Score=29.55 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=29.0
Q ss_pred HHHHHHcC-CeEEEEEccCccccccCCCeEeCCCCCCCCeEEEEEEeeccCCCccEEEEEcCC
Q 042468 251 LMKAVANQ-PVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWLVKNSW 312 (346)
Q Consensus 251 i~~~l~~g-Pv~v~~~~~~~~f~~y~~gi~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 312 (346)
+++.+..| ||.+.++.. ......+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------------~~~~~~gH~vVv~g~~~----~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------------VSITPSGHAMVVIGYDR----KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------------cccCCCCeEEEEEEEcC----CCCEEEECCC
Confidence 66777765 999887651 01234689999999971 1225667765
No 32
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=66.48 E-value=6.3 Score=29.89 Aligned_cols=20 Identities=30% Similarity=0.039 Sum_probs=8.7
Q ss_pred ChhhhhHHHHHHHHHHHHHH
Q 042468 1 MAMILLENKLVLAAILVLGV 20 (346)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~ 20 (346)
|++..+.+|.+++.++|+..
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 77555333333333333333
No 33
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=62.51 E-value=28 Score=32.39 Aligned_cols=29 Identities=17% Similarity=0.473 Sum_probs=23.5
Q ss_pred CCCeEEEEEEeeccC-CCccEEEEEcCCCC
Q 042468 286 ELDHGVTAVGYGTAD-DGTKYWLVKNSWGT 314 (346)
Q Consensus 286 ~~~Hav~iVGyg~~~-~g~~ywivkNSWG~ 314 (346)
..+||-.|++..... .+.....+||-||.
T Consensus 234 ~~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 234 VKGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred ccCcceEEeEEEEEccCceEEEEecCCccC
Confidence 358999999998652 17788999999995
No 34
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=54.28 E-value=8.1 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=16.9
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhc
Q 042468 1 MAMILLENKLVLAAILVLGVWAP 23 (346)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (346)
|..++|.+|+.+.||.++++.+.
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSd 23 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSD 23 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeec
Confidence 77788888888777777766433
No 35
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=49.77 E-value=73 Score=27.33 Aligned_cols=49 Identities=31% Similarity=0.686 Sum_probs=29.4
Q ss_pred HHHHHHHHc-CCeEEEEEccCccccccCCCeEeCCCCCCCCeEEEEEEeeccCCCccEEEEEcCCCCCCC--CCceEE
Q 042468 249 AALMKAVAN-QPVSVAIDASGSDFQFYSSGVFTGQCGTELDHGVTAVGYGTADDGTKYWLVKNSWGTTWG--ENGYIR 323 (346)
Q Consensus 249 ~~i~~~l~~-gPv~v~~~~~~~~f~~y~~gi~~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG--~~Gy~~ 323 (346)
+.|+..|.+ .||.+.-... ..+||.+|=||.. ..||-+= || || .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~------------------~~GHawViDGy~~----~~~~H~N--wG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK------------------SGGHAWVIDGYDS----DGYFHCN--WG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET------------------TEEEEEEEEEEES----SSEEEEE---S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC------------------CCCeEEEEcCccC----CCeEEEe--eC--ccCCCCCccC
Confidence 456777775 4988654333 1189999999953 3566544 55 54 569885
No 36
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.52 E-value=99 Score=21.86 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCccCChHHHHHHHHHHHHHHHH
Q 042468 37 ERHEMWMAQYGRVYRDNAEKEMRFKIFKENVEY 69 (346)
Q Consensus 37 ~~f~~~~~~~~k~Y~~~~e~~~R~~~f~~n~~~ 69 (346)
.-|++|+..|.+.-..+ |...|..-|++-++.
T Consensus 29 e~Fee~v~~~krel~pp-e~~~~~EE~~~~lRe 60 (77)
T KOG4702|consen 29 EIFEEFVRGYKRELSPP-EATKRKEEYENFLRE 60 (77)
T ss_pred HHHHHHHHhccccCCCh-HHHhhHHHHHHHHHH
Confidence 47999999999998776 666777767665554
No 37
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=41.01 E-value=38 Score=24.34 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=24.6
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhcccccccCChhHHHHHHHHHHHHhCCccC
Q 042468 1 MAMILLENKLVLAAILVLGVWAPQSWSRTLNDATMNERHEMWMAQYGRVYR 51 (346)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~Y~ 51 (346)
|..+.+-.+++|++++|+.+..... .++-...-+.++.|.|.-.
T Consensus 1 Mgg~s~~ellIIlvIvlLlFG~~KL-------Pel~r~lGk~ik~FKk~~~ 44 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVLLVFGTKRL-------TSGAKDLGSAVKEFKKGMH 44 (75)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCcch-------HHHHHHHHHHHHHHHHHhc
Confidence 4455556666666666666554433 3555555555555555443
No 38
>CHL00038 psbL photosystem II protein L
Probab=37.21 E-value=50 Score=20.13 Aligned_cols=18 Identities=6% Similarity=0.110 Sum_probs=12.9
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 042468 3 MILLENKLVLAAILVLGV 20 (346)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (346)
++++.++++|.+.+++..
T Consensus 17 SLy~GLLlifvl~vlfss 34 (38)
T CHL00038 17 SLYWGLLLIFVLAVLFSN 34 (38)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 577777777777777654
No 39
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=36.30 E-value=56 Score=19.87 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 042468 3 MILLENKLVLAAILVLGV 20 (346)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (346)
++++.+++++.+.+|+..
T Consensus 16 SLY~GLllifvl~vLFss 33 (37)
T PF02419_consen 16 SLYWGLLLIFVLAVLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhh
Confidence 577777777777777654
No 40
>PF15240 Pro-rich: Proline-rich
Probab=34.89 E-value=30 Score=29.40 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhccccc
Q 042468 10 LVLAAILVLGVWAPQSWS 27 (346)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (346)
|++|.++||++++++...
T Consensus 3 lVLLSvALLALSSAQ~~d 20 (179)
T PF15240_consen 3 LVLLSVALLALSSAQSTD 20 (179)
T ss_pred hHHHHHHHHHhhhccccc
Confidence 444446666676776543
No 41
>PF15339 Afaf: Acrosome formation-associated factor
Probab=34.76 E-value=46 Score=27.92 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhccc
Q 042468 3 MILLENKLVLAAILVLGVWAPQS 25 (346)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (346)
||-|.+..+|+++.|+.+|.+..
T Consensus 133 mLGIsLmTl~lfv~Ll~~c~atl 155 (200)
T PF15339_consen 133 MLGISLMTLFLFVILLAFCSATL 155 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888877777777754
No 42
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=33.68 E-value=43 Score=25.11 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=19.0
Q ss_pred ChhhhhHHH--HHHHHHHHHHHhhcccccccCChhHHHHHHHHHHHHhCCcc
Q 042468 1 MAMILLENK--LVLAAILVLGVWAPQSWSRTLNDATMNERHEMWMAQYGRVY 50 (346)
Q Consensus 1 m~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~Y 50 (346)
|.|+-|.+. ++|++++|+.+..-.. ..+-...-++.+.|.|.-
T Consensus 1 m~mF~iG~~ElliIlvVaLlvfGP~KL-------P~lar~lGk~i~~fkk~~ 45 (90)
T PRK14857 1 MNIFGIGLPEMAVILVIALLVFGPKKL-------PEIGRSLGKTLKGFQEAS 45 (90)
T ss_pred CCcccccHHHHHHHHHHHHHHcCchHH-------HHHHHHHHHHHHHHHHHH
Confidence 666655553 3333333333322222 344444555555554443
No 43
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=33.03 E-value=45 Score=24.42 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 042468 7 ENKLVLAAILVLGVWAP 23 (346)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (346)
-++++|++++|+..++.
T Consensus 33 vLVIIiLlImlfqsSS~ 49 (85)
T PF10717_consen 33 VLVIIILLIMLFQSSSN 49 (85)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 33444444444444433
No 44
>PF15588 Imm7: Immunity protein 7
Probab=31.59 E-value=1.6e+02 Score=23.07 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=25.6
Q ss_pred EEEEEEeeccC-CCccEEEEEcCC-----CCCCCCCceEEEEe
Q 042468 290 GVTAVGYGTAD-DGTKYWLVKNSW-----GTTWGENGYIRMQR 326 (346)
Q Consensus 290 av~iVGyg~~~-~g~~ywivkNSW-----G~~WG~~Gy~~i~~ 326 (346)
-|+.||+.+++ +.+.|.|++.+- ...=|.+||+ +..
T Consensus 17 ~v~~vG~ADd~~~~~~yiilQR~~~~de~D~~~~~d~~~-~e~ 58 (115)
T PF15588_consen 17 NVLMVGFADDEDGPKEYIILQRSLEFDEQDEDLGSDGYY-TEC 58 (115)
T ss_pred cEEEEEEecCCCCCceEEEEEccCCCCCcccccCcCcEE-EEE
Confidence 39999999875 446799999964 3444567886 444
No 45
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=30.73 E-value=69 Score=19.59 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 042468 3 MILLENKLVLAAILVLGV 20 (346)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (346)
++++.++++|.+.+|+..
T Consensus 18 SLy~GlLlifvl~vLFss 35 (39)
T PRK00753 18 SLYLGLLLVFVLGILFSS 35 (39)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 567777777777666654
No 46
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=29.16 E-value=88 Score=29.21 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=21.8
Q ss_pred CCCeEEEEEEeeccCCCcc--EEEEEcCCCC
Q 042468 286 ELDHGVTAVGYGTADDGTK--YWLVKNSWGT 314 (346)
Q Consensus 286 ~~~Hav~iVGyg~~~~g~~--ywivkNSWG~ 314 (346)
..+||=.|++...- ++.+ ...+||-||.
T Consensus 226 v~~HaYsVl~v~~~-~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 226 VKGHAYSVTDVREV-QGRRQELLRLRNPWGQ 255 (318)
T ss_pred ccCccEEEEEEEEE-ecCCeEEEEEECCCCC
Confidence 35899999998764 3445 8899999983
No 47
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=28.95 E-value=69 Score=24.07 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=12.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhc
Q 042468 1 MAMILLENKLVLAAILVLGVWAP 23 (346)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (346)
|-.+.+--+++|++++|+.+...
T Consensus 1 Mg~~g~~elliIlvIvlllFG~~ 23 (92)
T PRK00442 1 MGIFDWKHWIVILVVVVLVFGTK 23 (92)
T ss_pred CCCccHHHHHHHHHHHHHHhCcc
Confidence 44444545666666555555443
No 48
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=26.72 E-value=92 Score=22.64 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=13.2
Q ss_pred ChhhhhHHHHHHHHHHHHHHhh
Q 042468 1 MAMILLENKLVLAAILVLGVWA 22 (346)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (346)
|..+.+-.+++|++++|+.+..
T Consensus 1 Mgg~g~~ellIIlvIvlllFG~ 22 (78)
T PRK00720 1 MGSFSIWHWLIVLAVVLLLFGR 22 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHhCc
Confidence 4445556667777666666543
No 49
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=24.89 E-value=96 Score=22.30 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=25.0
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhcccccccCChhHHHHHHHHHHHHhCCccCCh
Q 042468 1 MAMILLENKLVLAAILVLGVWAPQSWSRTLNDATMNERHEMWMAQYGRVYRDN 53 (346)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~Y~~~ 53 (346)
|-.+.+--+++|++++|+.+..... .++-...-+.++.|.|.-.+.
T Consensus 1 m~g~g~~elliIl~i~lllFG~kKL-------P~l~~~lGk~ik~Fkk~~~~~ 46 (74)
T PRK01833 1 MGGISIWQLLIIVAIIVLLFGTKKL-------RTLGTDLGESVKGFKKAMADD 46 (74)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchH-------HHHHHHHHHHHHHHHHHhccc
Confidence 3334445566666655555543333 355566666666666665443
No 50
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=22.17 E-value=2.3e+02 Score=23.50 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHhCCcc
Q 042468 32 DATMNERHEMWMAQYGRVY 50 (346)
Q Consensus 32 ~~~~~~~f~~~~~~~~k~Y 50 (346)
+.....+|++|+..+...-
T Consensus 21 ~~~a~~~fe~wr~~~~~~~ 39 (156)
T PF10107_consen 21 ERRARELFEQWRQRESETL 39 (156)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 4677889999988765544
No 51
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=21.27 E-value=1.2e+02 Score=21.04 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhcccccccCChhHHHHHHHHHHHHhCCccCC
Q 042468 8 NKLVLAAILVLGVWAPQSWSRTLNDATMNERHEMWMAQYGRVYRD 52 (346)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~Y~~ 52 (346)
-+++|++++|+.+..... .++-...-++.+.|.+.-.+
T Consensus 8 ElliIlvv~LlvfGp~kL-------P~l~r~lGk~i~~frk~~~~ 45 (63)
T PRK14859 8 ELIVILVIVLIVFGAGKL-------PEIGGGLGKSIKNFKKATSE 45 (63)
T ss_pred HHHHHHHHHHHHhCchHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 455555555555544443 35666667777777665544
No 52
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=21.26 E-value=1.1e+02 Score=22.82 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 042468 4 ILLENKLVLAAILVLGVWA 22 (346)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (346)
+-+--+++|++++|+.+..
T Consensus 4 lG~~eLlIIlvIvLLlFG~ 22 (89)
T PRK03554 4 ISIWQLLIIAVIVVLLFGT 22 (89)
T ss_pred ccHHHHHHHHHHHHHHhCc
Confidence 3444455555555555443
No 53
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.94 E-value=59 Score=27.06 Aligned_cols=16 Identities=38% Similarity=0.889 Sum_probs=10.1
Q ss_pred ccCCCCCCc--cHHHHHH
Q 042468 142 GVKDQGQCG--CCWAFSA 157 (346)
Q Consensus 142 pV~dQg~cg--sCwAfA~ 157 (346)
|--|=|.|| +|+|||.
T Consensus 135 P~tNCg~CGEqtCmaFAi 152 (193)
T COG4871 135 PQTNCGKCGEQTCMAFAI 152 (193)
T ss_pred CCCccccchhHHHHHHHH
Confidence 334555664 6899984
No 54
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=20.03 E-value=1.3e+02 Score=21.60 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=13.2
Q ss_pred ChhhhhHHHHHHHHHHHHHHhhcc
Q 042468 1 MAMILLENKLVLAAILVLGVWAPQ 24 (346)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~ 24 (346)
|..+.+--+++|++++|+.+....
T Consensus 1 mg~~g~~elliIl~IvlllFG~kK 24 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLVFGTKK 24 (73)
T ss_pred CCCccHHHHHHHHHHHHHHhCcch
Confidence 444455556666666666554443
Done!