BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042472
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 43 ANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNELLCQLNE 85
A+RF+GL +NT VE +R R ELN +L+ ++ E
Sbjct: 67 AHRFLGLLYELEENTDKAVECYR--RSVELNPTQKDLVLKIAE 107
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 43 ANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNELLCQLNE 85
A+RF+GL +NT VE +R R ELN +L+ ++ E
Sbjct: 67 AHRFLGLLYELEENTDKAVECYR--RSVELNPXQKDLVLKIAE 107
>pdb|3MGA|A Chain A, 2.4 Angstrom Crystal Structure Of Ferric Enterobactin
Esterase (Fes) From Salmonella Typhimurium
pdb|3MGA|B Chain B, 2.4 Angstrom Crystal Structure Of Ferric Enterobactin
Esterase (Fes) From Salmonella Typhimurium
Length = 407
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 2 EHEEQQQPANQHKIIPKQQSLLEHHRSGRPFSFGHPSIEAAANRFVGLN 50
+H Q+ P N + QQ LL R+ PFS A F GL+
Sbjct: 246 QHRSQELPCNADFWLAVQQELLPQVRAVTPFSDDAGRTVVAGQSFGGLS 294
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 43 ANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNELLCQLNE 85
A+RF+GL +NT VE +R R ELN +L+ ++ E
Sbjct: 67 AHRFLGLLYELEENTDKAVECYR--RSVELNPTQKDLVLKIAE 107
>pdb|1WDZ|A Chain A, Crystal Structure Of Rcb Domain Of Irsp53
pdb|1WDZ|B Chain B, Crystal Structure Of Rcb Domain Of Irsp53
Length = 242
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 54 NDNTHPLVEVHRQVRINELNQR----HNELLCQLNEEKEWET 91
D + EVHRQ++ N+L + HNELL QL ++ E ++
Sbjct: 76 GDVLFQMAEVHRQIQ-NQLEEMLKSFHNELLTQLEQKVELDS 116
>pdb|2YKT|A Chain A, Crystal Structure Of The I-Bar Domain Of Irsp53 (Baiap2)
In Complex With An Ehec Derived Tir Peptide
Length = 253
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 54 NDNTHPLVEVHRQVRINELNQR----HNELLCQLNEEKEWET 91
D + EVHRQ++ N+L + HNELL QL ++ E ++
Sbjct: 76 GDVLFQMAEVHRQIQ-NQLEEMLKSFHNELLTQLEQKVELDS 116
>pdb|2PP0|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP0|B Chain B, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP0|C Chain C, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
FROM Salmonella Typhimurium Lt2
pdb|2PP1|A Chain A, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|B Chain B, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|C Chain C, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|D Chain D, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|E Chain E, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
pdb|2PP1|F Chain F, Crystal Structure Of L-talarate/galactarate Dehydratase
From Salmonella Typhimurium Lt2 Liganded With Mg And
L-lyxarohydroxamate
Length = 398
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 30/66 (45%)
Query: 62 EVHRQVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQ 121
++ R + E L+ N++ + ET ++ R ++ W E P+D + + Q
Sbjct: 206 DIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEEPLDAYDIEGHAQ 265
Query: 122 MGATID 127
+ A +D
Sbjct: 266 LAAALD 271
>pdb|2PP3|A Chain A, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
pdb|2PP3|B Chain B, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
pdb|2PP3|C Chain C, Crystal Structure Of L-TalarateGALACTARATE DEHYDRATASE
MUTANT K197A Liganded With Mg And L-Glucarate
Length = 398
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 30/66 (45%)
Query: 62 EVHRQVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQ 121
++ R + E L+ N++ + ET ++ R ++ W E P+D + + Q
Sbjct: 206 DIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEEPLDAYDIEGHAQ 265
Query: 122 MGATID 127
+ A +D
Sbjct: 266 LAAALD 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,639,004
Number of Sequences: 62578
Number of extensions: 170693
Number of successful extensions: 419
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 11
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)