BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042472
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana
GN=AGL61 PE=1 SV=1
Length = 264
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 30 RPFSFGHPSIEAAANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNELLCQLNEEKEW 89
+PFSFGHPS+E+ +R+V N + + L ELN + +L ++ EEK+
Sbjct: 114 KPFSFGHPSVESVLDRYVSRNNMSLAQSQQLQ--GSPAASCELNMQLTHILSEVEEEKKK 171
Query: 90 ETMVKQMR--TGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKL 137
+++MR + + S WWE PV+E+N +L +M +++L KT ++ +
Sbjct: 172 GQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNM 221
>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana
GN=AGL62 PE=1 SV=1
Length = 299
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 32 FSFGHPSIEAAANRFVGLNQ--PANDNTHPLVEVHRQVRINELNQRHNELLCQLNEEKEW 89
FSFGHP++++ +RF+ N P N L E R + +LN ++L QL EK+
Sbjct: 60 FSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKK 119
Query: 90 ETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKT 132
+K++R ++ WWE PV+EL +L +++L K
Sbjct: 120 YDELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKV 162
>sp|P39702|VPS8_YEAST Vacuolar protein sorting-associated protein 8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS8 PE=1
SV=2
Length = 1274
Score = 34.3 bits (77), Expect = 0.32, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 114 LNHQELLQMGATIDDLHKTFL-----SKLNEKTANASSSMAPPM 152
L+H + TI+D KTFL ++L+EK A++SS APP+
Sbjct: 6 LDHDSRSSIDTTINDTQKTFLEFRSYTQLSEKLASSSSYTAPPL 49
>sp|O19071|MGAT2_PIG Alpha-1,6-mannosyl-glycoprotein
2-beta-N-acetylglucosaminyltransferase OS=Sus scrofa
GN=MGAT2 PE=3 SV=1
Length = 446
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 36 HPSIEAAANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNELLCQLNEEK 87
HP+I VG+ + +ND+ PLV Q ++ L R+ L+ QLN ++
Sbjct: 57 HPAIS------VGIRRGSNDSAAPLVAAAPQPEVDNLTLRYRSLVYQLNFDQ 102
>sp|Q7VMF9|MACB_HAEDU Macrolide export ATP-binding/permease protein MacB OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=macB PE=3 SV=1
Length = 696
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 73 NQRHNELLCQLNEEKEWETMVKQMRTGKESQ 103
NQR N LLCQL EK+ E Q+ G++ +
Sbjct: 123 NQRANALLCQLGLEKQLENKPAQLSGGQQQR 153
>sp|Q9VSS7|EVG1_DROME UPF0193 protein EVG1 homolog OS=Drosophila melanogaster GN=CG5280
PE=1 SV=1
Length = 250
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 77 NELLCQLNEEKEWETMVKQMRTGKESQP 104
NELL Q+NE EW T ++ M GK+ +P
Sbjct: 191 NELLDQINERAEWLTEMESMGQGKKYRP 218
>sp|Q8CPC5|SBCC_STAES Nuclease SbcCD subunit C OS=Staphylococcus epidermidis (strain ATCC
12228) GN=sbcC PE=3 SV=1
Length = 1009
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 66 QVRINELNQRHNELLCQLNEEKEWETMVKQM 96
+ RI ELN R NEL C+ E+K+ + KQ+
Sbjct: 562 ETRIEELNHRENELNCEKQEKKDISKLQKQL 592
>sp|P08073|VMT9_MYXVL Kelch repeat protein M-T9 OS=Myxoma virus (strain Lausanne)
GN=m009L PE=3 SV=2
Length = 509
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 83 LNEEKEWETMVKQMRTGKESQPCWWETPVDELN--------HQELLQMGATIDDLHKTFL 134
++EE V+ + G E W + P + N EL +G T+D H TF+
Sbjct: 328 VDEENRLIGSVEYWQPGMEE---WHDAPYLQANVETATVCYRNELWIVGGTVDLYHPTFI 384
Query: 135 SKLNEKTANASSSMAP 150
S + + T N SM P
Sbjct: 385 SAVKKLTDNRWMSMEP 400
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,956,578
Number of Sequences: 539616
Number of extensions: 2292343
Number of successful extensions: 6757
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 6741
Number of HSP's gapped (non-prelim): 42
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)