Query 042472
Match_columns 157
No_of_seqs 116 out of 1337
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:29:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00265 MADS_MEF2_like MEF2 (m 99.7 5.5E-18 1.2E-22 114.4 3.9 47 4-50 25-72 (77)
2 KOG0014 MADS box transcription 99.7 1.2E-17 2.5E-22 129.4 5.1 48 4-51 26-76 (195)
3 cd00266 MADS_SRF_like SRF-like 99.4 7.3E-14 1.6E-18 95.5 2.5 47 4-50 25-73 (83)
4 smart00432 MADS MADS domain. 99.3 3.1E-13 6.7E-18 86.8 1.9 34 4-37 25-59 (59)
5 PF00319 SRF-TF: SRF-type tran 99.3 2.2E-13 4.7E-18 85.0 0.3 33 4-36 18-51 (51)
6 cd00120 MADS MADS: MCM1, Agamo 99.3 1.8E-12 3.8E-17 83.3 2.3 34 4-37 25-59 (59)
7 PF01486 K-box: K-box region; 98.7 7E-08 1.5E-12 67.8 8.4 66 74-145 12-77 (100)
8 KOG0015 Regulator of arginine 98.3 2.1E-07 4.6E-12 76.6 1.3 47 4-50 87-143 (338)
9 COG5068 ARG80 Regulator of arg 97.7 1.4E-05 3.1E-10 68.3 1.5 43 4-46 106-149 (412)
10 PF10584 Proteasome_A_N: Prote 92.5 0.012 2.7E-07 30.6 -1.8 13 21-33 4-16 (23)
11 PF07106 TBPIP: Tat binding pr 90.5 6 0.00013 29.9 10.4 73 66-149 71-143 (169)
12 KOG4302 Microtubule-associated 81.4 22 0.00048 33.0 10.7 73 69-141 112-184 (660)
13 PF05700 BCAS2: Breast carcino 80.2 24 0.00051 28.0 9.4 100 33-140 59-162 (221)
14 PF12325 TMF_TATA_bd: TATA ele 80.0 20 0.00044 26.0 8.6 26 115-140 94-119 (120)
15 TIGR01001 metA homoserine O-su 76.7 2.6 5.7E-05 35.3 3.0 45 4-48 198-248 (300)
16 PF14257 DUF4349: Domain of un 73.5 25 0.00054 28.3 7.9 59 68-139 126-184 (262)
17 COG3883 Uncharacterized protei 73.1 36 0.00079 28.1 8.8 24 115-138 78-101 (265)
18 PRK00736 hypothetical protein; 72.2 15 0.00033 23.8 5.3 35 64-98 16-50 (68)
19 PRK02119 hypothetical protein; 71.1 24 0.00052 23.2 6.1 35 64-98 20-54 (73)
20 PRK04406 hypothetical protein; 71.1 24 0.00052 23.4 6.1 33 65-97 23-55 (75)
21 PRK04325 hypothetical protein; 70.7 27 0.00059 23.0 6.3 35 64-98 20-54 (74)
22 COG3883 Uncharacterized protei 70.5 33 0.00072 28.3 8.0 65 68-147 53-117 (265)
23 PRK00295 hypothetical protein; 70.1 18 0.00039 23.4 5.3 35 64-98 16-50 (68)
24 PRK01919 tatB sec-independent 69.0 19 0.0004 27.8 5.8 18 12-31 8-25 (169)
25 TIGR03185 DNA_S_dndD DNA sulfu 68.3 47 0.001 30.4 9.4 33 115-147 260-292 (650)
26 PF04204 HTS: Homoserine O-suc 67.5 3.1 6.7E-05 34.9 1.4 45 4-48 198-248 (298)
27 PF15079 DUF4546: Domain of un 66.4 42 0.00092 26.0 7.3 63 69-146 49-111 (205)
28 PF09403 FadA: Adhesion protei 66.1 50 0.0011 24.2 8.0 24 21-48 8-31 (126)
29 PRK04406 hypothetical protein; 66.1 36 0.00078 22.5 7.2 51 70-135 7-57 (75)
30 PF04102 SlyX: SlyX; InterPro 65.9 19 0.00041 23.3 4.7 36 64-99 15-50 (69)
31 KOG4403 Cell surface glycoprot 65.3 27 0.00058 31.0 6.7 22 22-46 200-221 (575)
32 PRK02793 phi X174 lysis protei 65.1 26 0.00056 23.0 5.3 33 65-97 20-52 (72)
33 PRK00846 hypothetical protein; 65.0 26 0.00056 23.5 5.3 24 68-91 28-51 (77)
34 PF08317 Spc7: Spc7 kinetochor 64.2 68 0.0015 26.8 8.9 32 109-140 201-232 (325)
35 PRK04098 sec-independent trans 64.1 22 0.00047 27.1 5.3 26 114-139 81-106 (158)
36 PHA00327 minor capsid protein 62.8 27 0.00059 26.9 5.6 26 69-94 110-135 (187)
37 PF09432 THP2: Tho complex sub 62.8 49 0.0011 24.4 6.7 76 38-133 39-130 (132)
38 KOG3759 Uncharacterized RUN do 61.5 1.2E+02 0.0027 27.2 10.4 48 66-121 148-209 (621)
39 smart00787 Spc7 Spc7 kinetocho 61.1 69 0.0015 26.9 8.4 32 109-140 196-227 (312)
40 PRK11637 AmiB activator; Provi 61.1 79 0.0017 27.3 9.1 30 116-145 109-138 (428)
41 KOG4252 GTP-binding protein [S 60.5 38 0.00083 26.9 6.2 26 17-48 92-117 (246)
42 PRK02119 hypothetical protein; 60.5 46 0.00099 21.9 7.2 49 72-135 7-55 (73)
43 KOG4196 bZIP transcription fac 60.4 67 0.0015 23.8 7.8 8 148-155 128-135 (135)
44 PF06698 DUF1192: Protein of u 59.6 28 0.0006 22.2 4.4 33 105-137 12-44 (59)
45 PF04977 DivIC: Septum formati 58.4 33 0.00071 21.9 4.9 30 69-98 19-48 (80)
46 PF09941 DUF2173: Uncharacteri 56.7 7.7 0.00017 27.7 1.7 24 12-35 5-29 (108)
47 PRK11239 hypothetical protein; 56.1 42 0.0009 26.9 5.9 35 17-51 110-145 (215)
48 PF04120 Iron_permease: Low af 54.9 84 0.0018 23.2 7.6 31 109-139 90-120 (132)
49 KOG0183 20S proteasome, regula 54.9 7 0.00015 31.4 1.3 15 19-33 5-19 (249)
50 PRK02793 phi X174 lysis protei 53.3 62 0.0013 21.2 7.0 49 72-135 6-54 (72)
51 PF07106 TBPIP: Tat binding pr 53.0 94 0.002 23.2 8.8 26 113-138 141-166 (169)
52 PF10623 PilI: Plasmid conjuga 53.0 25 0.00053 23.8 3.5 31 19-49 8-41 (83)
53 COG4398 Uncharacterized protei 52.8 15 0.00032 31.1 3.0 35 17-51 320-356 (389)
54 PF15290 Syntaphilin: Golgi-lo 51.7 92 0.002 26.1 7.4 17 65-81 87-103 (305)
55 PF08657 DASH_Spc34: DASH comp 49.7 1.4E+02 0.0031 24.4 8.2 33 65-97 178-210 (259)
56 PRK05368 homoserine O-succinyl 49.3 20 0.00044 30.0 3.3 45 4-48 199-249 (302)
57 KOG0182 20S proteasome, regula 49.1 9.3 0.0002 30.7 1.2 19 17-35 8-28 (246)
58 PRK00153 hypothetical protein; 48.7 80 0.0017 21.9 5.9 39 114-152 63-102 (104)
59 TIGR03545 conserved hypothetic 46.6 90 0.002 28.4 7.2 16 17-33 105-120 (555)
60 PRK00888 ftsB cell division pr 46.4 59 0.0013 22.8 4.9 30 69-98 29-58 (105)
61 PRK13729 conjugal transfer pil 46.3 2.2E+02 0.0048 25.5 9.4 53 66-133 68-120 (475)
62 KOG1690 emp24/gp25L/p24 family 46.3 44 0.00096 26.6 4.6 50 66-122 145-194 (215)
63 PF11559 ADIP: Afadin- and alp 44.1 1.3E+02 0.0027 22.1 9.5 13 23-35 14-26 (151)
64 PF05852 DUF848: Gammaherpesvi 43.1 1.4E+02 0.0031 22.4 8.3 41 111-151 83-123 (146)
65 KOG3366 Mitochondrial F1F0-ATP 42.9 84 0.0018 24.3 5.5 14 109-122 128-141 (172)
66 PF14071 YlbD_coat: Putative c 42.9 58 0.0012 23.9 4.4 46 111-156 74-123 (124)
67 PRK13729 conjugal transfer pil 42.9 1E+02 0.0022 27.6 6.8 31 67-97 76-106 (475)
68 KOG0184 20S proteasome, regula 42.5 14 0.00031 29.8 1.3 20 14-33 3-23 (254)
69 smart00252 SH2 Src homology 2 41.9 63 0.0014 20.8 4.3 39 11-49 37-81 (84)
70 PRK13824 replication initiatio 41.5 1.2E+02 0.0026 26.5 7.0 25 114-138 213-237 (404)
71 PF03938 OmpH: Outer membrane 41.2 1.4E+02 0.003 21.7 10.6 78 33-136 18-95 (158)
72 PF10915 DUF2709: Protein of u 40.7 32 0.0007 27.3 3.0 22 23-48 154-177 (238)
73 KOG4603 TBP-1 interacting prot 40.4 1.8E+02 0.0038 22.8 8.0 64 67-140 79-142 (201)
74 KOG1681 Enoyl-CoA isomerase [L 39.9 1.1E+02 0.0025 25.1 6.1 79 7-97 54-133 (292)
75 PRK10884 SH3 domain-containing 39.8 1.9E+02 0.0041 22.8 7.7 19 68-86 94-112 (206)
76 PF04102 SlyX: SlyX; InterPro 39.5 1E+02 0.0022 19.8 6.3 19 118-136 33-51 (69)
77 PF13270 DUF4061: Domain of un 39.0 1.1E+02 0.0024 21.0 5.2 12 28-39 20-32 (90)
78 PF14009 DUF4228: Domain of un 38.9 38 0.00083 24.8 3.2 32 17-49 14-46 (181)
79 PF08317 Spc7: Spc7 kinetochor 38.5 1.2E+02 0.0025 25.4 6.3 60 69-132 232-291 (325)
80 PRK11281 hypothetical protein; 37.9 1.9E+02 0.0041 28.8 8.3 34 107-140 114-147 (1113)
81 cd03750 proteasome_alpha_type_ 37.8 12 0.00026 29.5 0.3 15 21-35 4-20 (227)
82 PF04945 YHS: YHS domain; Int 37.6 17 0.00037 21.4 0.9 24 15-38 5-31 (47)
83 PF00989 PAS: PAS fold; Inter 37.6 18 0.00039 23.6 1.1 28 15-43 6-34 (113)
84 COG4026 Uncharacterized protei 37.5 2.2E+02 0.0048 23.3 7.3 11 17-27 57-67 (290)
85 PF07701 HNOBA: Heme NO bindin 37.5 93 0.002 24.7 5.3 24 23-46 122-146 (219)
86 PF07438 DUF1514: Protein of u 37.4 1.2E+02 0.0025 19.8 5.7 23 112-134 43-65 (66)
87 cd03752 proteasome_alpha_type_ 37.1 13 0.00029 28.9 0.4 13 21-33 6-18 (213)
88 PF07676 PD40: WD40-like Beta 36.2 31 0.00067 18.9 1.8 20 17-36 8-27 (39)
89 TIGR03752 conj_TIGR03752 integ 36.1 3.2E+02 0.007 24.5 9.4 31 66-96 65-95 (472)
90 cd03755 proteasome_alpha_type_ 36.0 15 0.00033 28.4 0.6 14 22-35 5-20 (207)
91 COG2433 Uncharacterized conser 36.0 2.4E+02 0.0053 26.2 8.2 24 71-94 440-463 (652)
92 KOG4171 Adenylate/guanylate ki 35.3 1.6E+02 0.0035 27.6 7.0 70 23-93 334-416 (671)
93 PRK00736 hypothetical protein; 35.2 1.2E+02 0.0027 19.5 7.2 18 118-135 34-51 (68)
94 PF11460 DUF3007: Protein of u 35.1 66 0.0014 22.8 3.6 17 111-127 87-103 (104)
95 COG3644 Uncharacterized protei 35.0 52 0.0011 25.2 3.3 37 14-50 28-67 (194)
96 PF11336 DUF3138: Protein of u 34.9 2.3E+02 0.005 25.3 7.6 23 113-135 79-101 (514)
97 cd02980 TRX_Fd_family Thioredo 34.9 33 0.00072 21.7 2.0 23 23-45 53-76 (77)
98 cd03749 proteasome_alpha_type_ 34.7 17 0.00036 28.4 0.6 12 21-32 4-15 (211)
99 cd03756 proteasome_alpha_arche 34.5 16 0.00035 28.3 0.5 14 22-35 6-21 (211)
100 PF11800 RP-C_C: Replication p 34.5 1.1E+02 0.0024 23.8 5.2 43 114-156 21-63 (207)
101 COG2133 Glucose/sorbosone dehy 34.1 25 0.00055 30.7 1.7 17 21-37 180-197 (399)
102 KOG4673 Transcription factor T 34.0 3.4E+02 0.0073 25.9 8.8 29 115-143 930-958 (961)
103 PRK04654 sec-independent trans 33.8 1.3E+02 0.0029 24.0 5.5 8 20-27 15-22 (214)
104 PRK02195 V-type ATP synthase s 33.3 1.7E+02 0.0037 22.9 6.1 67 15-94 91-160 (201)
105 COG4026 Uncharacterized protei 33.3 2.2E+02 0.0048 23.2 6.7 7 133-139 196-202 (290)
106 PF11236 DUF3037: Protein of u 33.2 37 0.0008 24.2 2.2 22 18-39 16-38 (118)
107 COG4575 ElaB Uncharacterized c 33.2 1.8E+02 0.0039 20.7 7.2 28 113-140 33-60 (104)
108 KOG1937 Uncharacterized conser 33.0 1.3E+02 0.0027 27.0 5.7 86 65-150 291-380 (521)
109 PF00352 TBP: Transcription fa 33.0 40 0.00087 22.4 2.2 27 17-44 47-73 (86)
110 PTZ00246 proteasome subunit al 32.5 16 0.00034 29.3 0.2 17 19-35 6-24 (253)
111 PF10473 CENP-F_leu_zip: Leuci 32.4 2.1E+02 0.0046 21.3 6.9 62 69-142 61-122 (140)
112 TIGR02231 conserved hypothetic 32.2 3E+02 0.0066 24.4 8.3 27 69-95 80-106 (525)
113 PF04678 DUF607: Protein of un 32.2 2.1E+02 0.0046 21.8 6.4 52 34-94 32-84 (180)
114 cd03751 proteasome_alpha_type_ 31.9 21 0.00046 27.9 0.8 11 22-32 8-18 (212)
115 TIGR03633 arc_protsome_A prote 31.8 21 0.00045 28.0 0.7 14 22-35 7-22 (224)
116 COG4831 Roadblock/LC7 domain [ 31.6 45 0.00098 23.5 2.3 27 11-37 6-32 (109)
117 KOG4286 Dystrophin-like protei 31.5 1E+02 0.0022 29.5 5.1 66 67-133 213-278 (966)
118 TIGR01916 F420_cofE F420-0:gam 31.2 38 0.00082 27.6 2.1 23 16-38 139-161 (243)
119 PF12566 DUF3748: Protein of u 30.5 27 0.0006 25.3 1.1 22 22-45 72-93 (122)
120 PF11172 DUF2959: Protein of u 30.1 2.8E+02 0.006 22.0 6.7 50 67-119 64-113 (201)
121 KOG0995 Centromere-associated 30.1 2.2E+02 0.0048 26.2 6.9 66 65-134 292-363 (581)
122 PF00843 Arena_nucleocap: Aren 30.0 69 0.0015 28.6 3.6 28 109-136 86-113 (533)
123 cd04518 TBP_archaea archaeal T 29.9 56 0.0012 25.1 2.8 23 17-40 45-67 (174)
124 cd03754 proteasome_alpha_type_ 29.4 25 0.00054 27.5 0.8 14 20-33 4-17 (215)
125 PHA01750 hypothetical protein 29.4 1.3E+02 0.0028 19.7 4.0 25 72-96 40-64 (75)
126 PLN03194 putative disease resi 29.4 34 0.00074 26.8 1.5 25 17-46 80-106 (187)
127 PF10491 Nrf1_DNA-bind: NLS-bi 29.2 51 0.0011 26.3 2.5 38 11-48 46-87 (214)
128 KOG0995 Centromere-associated 29.2 4.6E+02 0.01 24.2 9.6 57 72-133 292-348 (581)
129 KOG0804 Cytoplasmic Zn-finger 29.1 4.3E+02 0.0092 23.8 8.5 28 68-95 383-410 (493)
130 PF13540 RCC1_2: Regulator of 29.0 31 0.00066 18.4 0.9 21 17-38 7-27 (30)
131 KOG3048 Molecular chaperone Pr 28.9 1.4E+02 0.0031 22.5 4.7 29 109-137 8-36 (153)
132 PF15372 DUF4600: Domain of un 28.9 2.4E+02 0.0052 20.8 9.0 28 111-138 48-75 (129)
133 PRK11637 AmiB activator; Provi 28.8 3.8E+02 0.0083 23.1 8.7 19 118-136 104-122 (428)
134 PF13188 PAS_8: PAS domain; PD 28.7 35 0.00076 20.5 1.3 29 14-44 5-34 (64)
135 CHL00020 psbN photosystem II p 28.4 4.1 8.8E-05 24.3 -2.9 19 20-38 11-31 (43)
136 PF07014 Hs1pro-1_C: Hs1pro-1 28.3 48 0.001 26.9 2.2 18 139-157 120-137 (261)
137 PTZ00134 40S ribosomal protein 28.2 1.3E+02 0.0029 22.7 4.6 20 109-128 56-75 (154)
138 PF06657 Cep57_MT_bd: Centroso 28.0 1.9E+02 0.004 19.2 9.4 60 72-141 15-74 (79)
139 PRK05864 enoyl-CoA hydratase; 27.8 47 0.001 26.9 2.2 20 17-36 52-71 (276)
140 cd03753 proteasome_alpha_type_ 27.3 20 0.00043 27.8 -0.1 14 22-35 5-20 (213)
141 PF06694 Plant_NMP1: Plant nuc 27.1 3.9E+02 0.0085 22.7 7.9 98 3-135 126-226 (325)
142 PF08386 Abhydrolase_4: TAP-li 26.8 1.2E+02 0.0027 20.6 3.9 31 21-51 64-95 (103)
143 PLN02664 enoyl-CoA hydratase/d 26.7 53 0.0011 26.6 2.3 20 17-36 50-69 (275)
144 COG0512 PabA Anthranilate/para 26.6 68 0.0015 25.2 2.8 26 21-48 47-73 (191)
145 PF11976 Rad60-SLD: Ubiquitin- 26.3 83 0.0018 19.6 2.8 31 20-50 1-34 (72)
146 PF06937 EURL: EURL protein; 26.3 1.2E+02 0.0026 25.3 4.2 37 107-143 212-248 (285)
147 PF13600 DUF4140: N-terminal d 26.3 1.9E+02 0.004 19.6 4.7 32 67-98 70-101 (104)
148 PRK09039 hypothetical protein; 25.6 4.1E+02 0.009 22.5 8.1 21 69-89 139-159 (343)
149 PRK07658 enoyl-CoA hydratase; 25.6 57 0.0012 25.9 2.3 20 17-36 43-62 (257)
150 TIGR02949 anti_SigH_actin anti 25.5 2.1E+02 0.0045 19.0 4.7 44 112-155 22-70 (84)
151 COG2900 SlyX Uncharacterized p 25.4 2.1E+02 0.0045 19.0 5.3 23 67-89 22-44 (72)
152 PHA03011 hypothetical protein; 25.2 2.6E+02 0.0055 19.9 7.8 52 68-134 65-116 (120)
153 COG2333 ComEC Predicted hydrol 25.1 67 0.0014 26.8 2.6 25 24-50 236-260 (293)
154 TIGR02420 dksA RNA polymerase- 25.0 1.8E+02 0.0038 20.3 4.5 29 114-142 1-29 (110)
155 PF12958 DUF3847: Protein of u 25.0 2.3E+02 0.0049 19.4 4.8 18 109-126 58-75 (86)
156 cd00187 TOP4c DNA Topoisomeras 24.9 2.9E+02 0.0062 24.5 6.7 26 20-48 301-326 (445)
157 PRK00295 hypothetical protein; 24.6 2E+02 0.0043 18.5 7.3 19 118-136 34-52 (68)
158 PRK00394 transcription factor; 24.3 76 0.0016 24.4 2.7 28 17-45 137-164 (179)
159 PF10267 Tmemb_cc2: Predicted 24.3 2.8E+02 0.0062 24.2 6.4 15 113-127 272-286 (395)
160 PRK07659 enoyl-CoA hydratase; 23.8 62 0.0013 25.9 2.2 20 17-36 47-66 (260)
161 PRK06495 enoyl-CoA hydratase; 23.7 60 0.0013 25.9 2.1 19 17-35 45-63 (257)
162 PRK03996 proteasome subunit al 23.7 34 0.00073 27.1 0.6 17 20-36 12-30 (241)
163 PRK00373 V-type ATP synthase s 23.5 2.5E+02 0.0054 21.8 5.5 35 14-48 97-137 (204)
164 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 23.4 68 0.0015 24.2 2.2 24 7-30 66-89 (182)
165 PF03989 DNA_gyraseA_C: DNA gy 23.1 52 0.0011 19.0 1.2 15 22-36 3-17 (48)
166 COG1671 Uncharacterized protei 23.1 41 0.00089 25.4 0.9 25 9-33 65-97 (150)
167 PF00846 Hanta_nucleocap: Hant 23.0 4.3E+02 0.0093 23.3 7.1 59 68-136 3-68 (428)
168 PRK11539 ComEC family competen 22.9 81 0.0018 29.6 3.0 30 17-50 681-710 (755)
169 PF08262 Lem_TRP: Leucophaea m 22.6 42 0.0009 13.8 0.5 7 149-155 1-7 (10)
170 PF06717 DUF1202: Protein of u 22.4 4.7E+02 0.01 22.0 7.6 38 73-116 151-188 (308)
171 PF13949 ALIX_LYPXL_bnd: ALIX 22.3 2.6E+02 0.0056 22.4 5.6 54 74-132 43-99 (296)
172 cd01854 YjeQ_engC YjeQ/EngC. 22.3 77 0.0017 25.9 2.5 29 14-48 74-103 (287)
173 PF11853 DUF3373: Protein of u 22.2 68 0.0015 28.8 2.3 26 68-93 32-57 (489)
174 PRK00026 trmD tRNA (guanine-N( 22.2 52 0.0011 26.9 1.4 14 20-33 82-95 (244)
175 KOG2189 Vacuolar H+-ATPase V0 22.1 4.5E+02 0.0097 25.3 7.5 84 61-155 280-371 (829)
176 PRK06210 enoyl-CoA hydratase; 22.0 73 0.0016 25.6 2.3 19 17-35 48-66 (272)
177 PF03961 DUF342: Protein of un 22.0 5.3E+02 0.012 22.4 8.6 26 72-97 332-357 (451)
178 PF08537 NBP1: Fungal Nap bind 22.0 88 0.0019 26.6 2.7 44 68-118 183-226 (323)
179 PF07820 TraC: TraC-like prote 21.9 2.8E+02 0.0061 19.2 6.7 60 70-139 5-65 (92)
180 COG1579 Zn-ribbon protein, pos 21.9 4.4E+02 0.0095 21.4 9.1 52 69-133 54-105 (239)
181 PRK07799 enoyl-CoA hydratase; 21.9 68 0.0015 25.7 2.1 20 17-36 47-66 (263)
182 KOG0641 WD40 repeat protein [G 21.9 67 0.0014 26.4 2.0 33 6-38 18-53 (350)
183 PF10498 IFT57: Intra-flagella 21.7 5.2E+02 0.011 22.2 8.6 60 69-136 261-320 (359)
184 cd01911 proteasome_alpha prote 21.7 31 0.00066 26.7 -0.0 11 23-33 6-16 (209)
185 COG2101 SPT15 TATA-box binding 21.6 1.2E+02 0.0025 23.7 3.1 25 17-42 51-75 (185)
186 PRK14599 trmD tRNA (guanine-N( 21.6 54 0.0012 26.4 1.4 13 21-33 80-92 (222)
187 PRK06563 enoyl-CoA hydratase; 21.6 73 0.0016 25.4 2.2 20 17-36 41-60 (255)
188 PRK07260 enoyl-CoA hydratase; 21.4 74 0.0016 25.3 2.2 20 17-36 44-63 (255)
189 TIGR01069 mutS2 MutS2 family p 21.4 5.7E+02 0.012 24.3 8.3 7 21-27 460-466 (771)
190 smart00787 Spc7 Spc7 kinetocho 21.0 3.8E+02 0.0082 22.5 6.4 60 69-132 227-286 (312)
191 PHA02047 phage lambda Rz1-like 20.9 3.1E+02 0.0067 19.3 5.5 48 66-113 40-88 (101)
192 KOG0181 20S proteasome, regula 20.9 57 0.0012 26.0 1.3 14 20-33 8-21 (233)
193 COG4717 Uncharacterized conser 20.9 8E+02 0.017 24.1 9.3 29 69-97 183-211 (984)
194 PF07960 CBP4: CBP4; InterPro 20.9 3.5E+02 0.0076 19.9 8.8 25 20-46 16-40 (128)
195 PF04156 IncA: IncA protein; 20.7 3.7E+02 0.008 20.1 7.1 30 68-97 82-111 (191)
196 PF15458 NTR2: Nineteen comple 20.7 2.9E+02 0.0063 22.4 5.5 29 69-97 224-252 (254)
197 PF04564 U-box: U-box domain; 20.7 2.4E+02 0.0052 17.9 5.0 20 24-49 18-37 (73)
198 PF00659 POLO_box: POLO box du 20.6 74 0.0016 20.0 1.7 15 23-37 26-40 (68)
199 TIGR01126 pdi_dom protein disu 20.5 1.4E+02 0.0031 19.1 3.2 23 21-43 72-95 (102)
200 TIGR00088 trmD tRNA (guanine-N 20.5 59 0.0013 26.4 1.4 13 21-33 80-92 (233)
201 PRK05862 enoyl-CoA hydratase; 20.4 87 0.0019 25.0 2.4 20 17-36 46-65 (257)
202 PF05325 DUF730: Protein of un 20.4 1.3E+02 0.0028 21.2 2.9 36 105-140 63-101 (122)
203 PRK05674 gamma-carboxygeranoyl 20.4 83 0.0018 25.3 2.3 20 17-36 48-67 (265)
204 PF10654 DUF2481: Protein of u 20.4 2.5E+02 0.0053 20.4 4.4 48 69-125 29-79 (126)
205 PF02403 Seryl_tRNA_N: Seryl-t 20.2 2.9E+02 0.0063 18.7 7.0 31 68-98 30-60 (108)
206 PRK04863 mukB cell division pr 20.1 4.9E+02 0.011 26.9 7.8 22 109-130 430-451 (1486)
207 PF05873 Mt_ATP-synt_D: ATP sy 20.1 3.4E+02 0.0073 20.4 5.4 32 86-122 108-139 (161)
No 1
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.71 E-value=5.5e-18 Score=114.42 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=43.7
Q ss_pred hhhhccccccccc-CceeeEEEEeCCCCceeccCCCHHHHHHHhhcCC
Q 042472 4 EEQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHPSIEAAANRFVGLN 50 (157)
Q Consensus 4 ~~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ryl~~~ 50 (157)
...||||+||||| ||+||||||||+|++|+|++||+++||+||++.+
T Consensus 25 ~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~ 72 (77)
T cd00265 25 NGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTS 72 (77)
T ss_pred hhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcc
Confidence 3579999999996 9999999999999999999999999999998854
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=99.70 E-value=1.2e-17 Score=129.44 Aligned_cols=48 Identities=19% Similarity=0.464 Sum_probs=43.9
Q ss_pred hhhhccccccccc-CceeeEEEEeCCCCceeccCCC--HHHHHHHhhcCCC
Q 042472 4 EEQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHPS--IEAAANRFVGLNQ 51 (157)
Q Consensus 4 ~~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PS--v~~Vi~Ryl~~~~ 51 (157)
...||||+||||| ||+||||||||+||+|+||+|+ |+.|++||+....
T Consensus 26 ~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~ 76 (195)
T KOG0014|consen 26 NGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTE 76 (195)
T ss_pred hhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhh
Confidence 4579999999995 9999999999999999999998 9999999988543
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.42 E-value=7.3e-14 Score=95.54 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=42.7
Q ss_pred hhhhccccccccc-CceeeEEEEeCCCCceeccCCC-HHHHHHHhhcCC
Q 042472 4 EEQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHPS-IEAAANRFVGLN 50 (157)
Q Consensus 4 ~~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PS-v~~Vi~Ryl~~~ 50 (157)
...||||+||||| ||+||+|||||+|++|.|++++ ++.+++||....
T Consensus 25 ~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~ 73 (83)
T cd00266 25 QGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS 73 (83)
T ss_pred hhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcC
Confidence 3579999999996 9999999999999999999887 999999997743
No 4
>smart00432 MADS MADS domain.
Probab=99.35 E-value=3.1e-13 Score=86.76 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=31.7
Q ss_pred hhhhccccccccc-CceeeEEEEeCCCCceeccCC
Q 042472 4 EEQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHP 37 (157)
Q Consensus 4 ~~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~P 37 (157)
...+|||+||||| ||+||+|||||+|++|.|++|
T Consensus 25 ~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 25 NGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred hhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 3579999999996 999999999999999999997
No 5
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.33 E-value=2.2e-13 Score=84.97 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=29.3
Q ss_pred hhhhccccccccc-CceeeEEEEeCCCCceeccC
Q 042472 4 EEQQQPANQHKII-PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 4 ~~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~ 36 (157)
...||||+|||+| ||+||||||||+|++|.|++
T Consensus 18 ~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 18 KGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred hhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 4579999999996 99999999999999999975
No 6
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.27 E-value=1.8e-12 Score=83.26 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=31.4
Q ss_pred hhhhccccccccc-CceeeEEEEeCCCCceeccCC
Q 042472 4 EEQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHP 37 (157)
Q Consensus 4 ~~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~P 37 (157)
...+|||+||||| ||+|++|||||+|++|.|++|
T Consensus 25 ~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 25 NGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred chHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 3579999999996 999999999999999999986
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.75 E-value=7e-08 Score=67.84 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042472 74 QRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEKTANAS 145 (157)
Q Consensus 74 ~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~~as 145 (157)
..+..+..++..++..++.|+...+ +..|+|+++|+++||..||.+|+.+..+||.|+.+++++..
T Consensus 12 ~~~e~~~~e~~~L~~~~~~L~~~~R------~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i 77 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENESLQKELR------HLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQI 77 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------ccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3344455555556666666676677 78899999999999999999999999999999999987653
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=98.30 E-value=2.1e-07 Score=76.56 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=40.5
Q ss_pred hhhhccccccccc-CceeeEEEEeCCCCceeccCCCH---------HHHHHHhhcCC
Q 042472 4 EEQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHPSI---------EAAANRFVGLN 50 (157)
Q Consensus 4 ~~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PSv---------~~Vi~Ryl~~~ 50 (157)
-.++|||+|||+| |.+|-|+|-|.+|-+|.|++|-. +++|.-+++..
T Consensus 87 ~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~p 143 (338)
T KOG0015|consen 87 TGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNAP 143 (338)
T ss_pred hhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcCC
Confidence 3589999999999 99999999999999999999843 56777777743
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=97.70 E-value=1.4e-05 Score=68.31 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=38.0
Q ss_pred hhhhccccccccc-CceeeEEEEeCCCCceeccCCCHHHHHHHh
Q 042472 4 EEQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHPSIEAAANRF 46 (157)
Q Consensus 4 ~~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ry 46 (157)
..++|||+||+|| |.+|+++|.|.+|++|.|+.|....|+.--
T Consensus 106 ~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~~ 149 (412)
T COG5068 106 HGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKSL 149 (412)
T ss_pred hhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccccc
Confidence 4578999999999 999999999999999999999777666544
No 10
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=92.48 E-value=0.012 Score=30.56 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=10.6
Q ss_pred eEEEEeCCCCcee
Q 042472 21 SLLEHHRSGRPFS 33 (157)
Q Consensus 21 AlIVFSp~GK~fs 33 (157)
.+.+|||.||+|.
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 4568999999984
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.52 E-value=6 Score=29.85 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEKTANAS 145 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~~as 145 (157)
...+..+..++.+|++++..++.....|...++.- -..++.+||...-.+|+.=...+..|+..+.. ++
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L----------~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~-~~ 139 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASL----------SSEPTNEELREEIEELEEEIEELEEKLEKLRS-GS 139 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 33467778888888888888887777777666532 13478888888888888888888888888766 43
Q ss_pred CCCC
Q 042472 146 SSMA 149 (157)
Q Consensus 146 s~~~ 149 (157)
...+
T Consensus 140 ~~vs 143 (169)
T PF07106_consen 140 KPVS 143 (169)
T ss_pred CCCC
Confidence 3333
No 12
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.40 E-value=22 Score=33.01 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEKT 141 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~ 141 (157)
+++|..++++=.+++-....+.+.|-..+.+..+.......|..+|++..|++|...|..+++.-..|+.++.
T Consensus 112 le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~ 184 (660)
T KOG4302|consen 112 LEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVL 184 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776666666666666666655543322223456888999999999999999999999998887753
No 13
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=80.22 E-value=24 Score=27.99 Aligned_cols=100 Identities=11% Similarity=0.192 Sum_probs=61.6
Q ss_pred eccCCCHHHHHHHhhcCCCCCCCC----CCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccc
Q 042472 33 SFGHPSIEAAANRFVGLNQPANDN----THPLVEVHRQVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWE 108 (157)
Q Consensus 33 sFg~PSv~~Vi~Ryl~~~~~~~~~----~~~~~e~~~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~ 108 (157)
.|-+|.+..=++|+.+..+....+ ..+...+.....+..|+.-+.....+++....|..+|.-+.+ .+.. .|.
T Consensus 59 ~~~t~~l~~E~~R~~~~~~~~~lD~sRY~l~~p~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeLl~~-~g~n-aW~- 135 (221)
T PF05700_consen 59 AFETPLLQAELERVASGEPMQGLDMSRYELPPPPSGKSNDVEAWKEALDNAYAQLEHQRLRLENLELLSK-YGEN-AWL- 135 (221)
T ss_pred cccchhHHHHHHHHHcCCCCCccCHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHH-HHH-
Confidence 365677888888887764322111 011111122234777888888888888888888887764444 2221 354
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDDLHKTFLSKLNEK 140 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l 140 (157)
.....|+.+...|+.-+..++..++.+
T Consensus 136 -----~~n~~Le~~~~~le~~l~~~k~~ie~v 162 (221)
T PF05700_consen 136 -----IHNEQLEAMLKRLEKELAKLKKEIEEV 162 (221)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777777777777777777766654
No 14
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.01 E-value=20 Score=25.96 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 115 NHQELLQMGATIDDLHKTFLSKLNEK 140 (157)
Q Consensus 115 ~~~EL~~le~~Le~l~~~v~~r~~~l 140 (157)
--++.++|+..+.+++...+..++++
T Consensus 94 K~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 94 KSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888889888888888775
No 15
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=76.73 E-value=2.6 Score=35.29 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=35.7
Q ss_pred hhhhccccccccc--CceeeEEEEeCCC--CceeccCC--CHHHHHHHhhc
Q 042472 4 EEQQQPANQHKII--PKQQSLLEHHRSG--RPFSFGHP--SIEAAANRFVG 48 (157)
Q Consensus 4 ~~~~kKA~ELSvl--dAeVAlIVFSp~G--K~fsFg~P--Sv~~Vi~Ryl~ 48 (157)
+++.++..+|.|| +.++++.+|+..+ .+|-|||| ..+.+.+-|..
T Consensus 198 ~~~i~~~~~L~vla~s~e~G~~l~~s~d~r~vfi~GH~EYd~~TL~~EY~R 248 (300)
T TIGR01001 198 AEDIDKVTDLEILAESDEAGVYLAANKDERNIFVTGHPEYDAYTLHQEYVR 248 (300)
T ss_pred HHHHhcCCCCeEEecCCCcceEEEEcCCCCEEEEcCCCccChhHHHHHHHH
Confidence 3556777899997 7789998888776 78888999 57788888874
No 16
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=73.47 E-value=25 Score=28.30 Aligned_cols=59 Identities=8% Similarity=0.133 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNE 139 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~ 139 (157)
..++...+|..+..+++.+++..++|.+.++.. =+++|+..++..|.+++..|..-..+
T Consensus 126 ~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka-------------~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 126 SSEDVTEQYVDLEARLKNLEAEEERLLELLEKA-------------KTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888889988888888888877632 18999999999998888777655444
No 17
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.11 E-value=36 Score=28.08 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 115 NHQELLQMGATIDDLHKTFLSKLN 138 (157)
Q Consensus 115 ~~~EL~~le~~Le~l~~~v~~r~~ 138 (157)
.-.++..|+..+..+..+|+.|..
T Consensus 78 ~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 78 SKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888877777643
No 18
>PRK00736 hypothetical protein; Provisional
Probab=72.23 E-value=15 Score=23.80 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 64 HRQVRINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 64 ~~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
+....|++||..+.+.+.+++.++++...|.+.++
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666655555554444
No 19
>PRK02119 hypothetical protein; Provisional
Probab=71.14 E-value=24 Score=23.23 Aligned_cols=35 Identities=14% Similarity=0.056 Sum_probs=19.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 64 HRQVRINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 64 ~~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
+....|++||..+.+.+.+++.+++....|.+.++
T Consensus 20 ~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 20 FQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666555555554444
No 20
>PRK04406 hypothetical protein; Provisional
Probab=71.09 E-value=24 Score=23.40 Aligned_cols=33 Identities=15% Similarity=0.120 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 65 RQVRINELNQRHNELLCQLNEEKEWETMVKQMR 97 (157)
Q Consensus 65 ~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~ 97 (157)
....|++||..+.+.+.+++.++++...|.+.+
T Consensus 23 QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 23 QEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444444433
No 21
>PRK04325 hypothetical protein; Provisional
Probab=70.66 E-value=27 Score=23.01 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 64 HRQVRINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 64 ~~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
+....|++||..+.+.+.+++.++++...|.+.++
T Consensus 20 fQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 20 FQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666555555444
No 22
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.49 E-value=33 Score=28.32 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEKTANASSS 147 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~~ass~ 147 (157)
.|+.|..+++.++.+++..++++..++..++. --.++..++..+..-...+..|.+-+.+.++++
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~---------------l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t 117 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKK---------------LQKEIAELKENIVERQELLKKRARAMQVNGTAT 117 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Confidence 35555555555666666556666666555552 345777889999999999999999988888775
No 23
>PRK00295 hypothetical protein; Provisional
Probab=70.11 E-value=18 Score=23.43 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 64 HRQVRINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 64 ~~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
+....|++||..+.+.+.+++.++++...|.+.++
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666555555554444443
No 24
>PRK01919 tatB sec-independent translocase; Provisional
Probab=68.96 E-value=19 Score=27.79 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=11.1
Q ss_pred cccccCceeeEEEEeCCCCc
Q 042472 12 QHKIIPKQQSLLEHHRSGRP 31 (157)
Q Consensus 12 ELSvldAeVAlIVFSp~GK~ 31 (157)
||-|+++ ||||||-| .||
T Consensus 8 ElliI~V-VALiV~GP-ekL 25 (169)
T PRK01919 8 KLALIGV-VALVVIGP-ERL 25 (169)
T ss_pred HHHHHHH-HHHheeCc-hHh
Confidence 3444344 78888888 444
No 25
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.28 E-value=47 Score=30.44 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042472 115 NHQELLQMGATIDDLHKTFLSKLNEKTANASSS 147 (157)
Q Consensus 115 ~~~EL~~le~~Le~l~~~v~~r~~~l~~~ass~ 147 (157)
-.++...++..+..+......+..++..-++.+
T Consensus 260 ~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 260 LFEEREQLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456677888888888888888887777666655
No 26
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=67.52 E-value=3.1 Score=34.86 Aligned_cols=45 Identities=16% Similarity=0.374 Sum_probs=30.9
Q ss_pred hhhhccccccccc--CceeeEEEEe-CCC-CceeccCCC--HHHHHHHhhc
Q 042472 4 EEQQQPANQHKII--PKQQSLLEHH-RSG-RPFSFGHPS--IEAAANRFVG 48 (157)
Q Consensus 4 ~~~~kKA~ELSvl--dAeVAlIVFS-p~G-K~fsFg~PS--v~~Vi~Ryl~ 48 (157)
.++.+++.+|.|| +.++++.+++ +.| .+|-||||- .+.+.+-|..
T Consensus 198 ~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r~vfi~GH~EYd~~TL~~EY~R 248 (298)
T PF04204_consen 198 RDDIKKAPGLEVLAESEEAGVFLVASKDGRQVFITGHPEYDADTLAKEYRR 248 (298)
T ss_dssp HHHHCT-TTEEEEEEETTTEEEEEEECCCTEEEE-S-TT--TTHHHHHHHH
T ss_pred HHHHhcCCCcEEEeccCCcceEEEEcCCCCEEEEeCCCccChhHHHHHHHH
Confidence 3566889999997 6788887775 444 577889994 5678888865
No 27
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=66.36 E-value=42 Score=26.00 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEKTANASS 146 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~~ass 146 (157)
.++|..++.+.++++ +++.+++.++. +|=+-+++-|.+|-.-+.++++.+.++.+-|+-..-+
T Consensus 49 T~eLkNeLREVREEL---kEKmeEIKQIK------------diMDKDFDKL~EFVEIMKeMQkDMDEKMDvLiNiQKn 111 (205)
T PF15079_consen 49 TQELKNELREVREEL---KEKMEEIKQIK------------DIMDKDFDKLHEFVEIMKEMQKDMDEKMDVLINIQKN 111 (205)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHHH------------HHHhhhHHHHHHHHHHHHHHHHhHHHhhhHHhhcccc
Confidence 456777777776665 55666666543 2444588999999999999999999998876544433
No 28
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=66.08 E-value=50 Score=24.18 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=5.9
Q ss_pred eEEEEeCCCCceeccCCCHHHHHHHhhc
Q 042472 21 SLLEHHRSGRPFSFGHPSIEAAANRFVG 48 (157)
Q Consensus 21 AlIVFSp~GK~fsFg~PSv~~Vi~Ryl~ 48 (157)
++++.|+ .+|+.|...+|..++.+
T Consensus 8 ~~lllss----~sfaA~~~~~v~~~l~~ 31 (126)
T PF09403_consen 8 GMLLLSS----ISFAATATASVESELNQ 31 (126)
T ss_dssp -------------------HHHHHHHHH
T ss_pred HHHHHHH----HHHHcccchHHHHHHHH
Confidence 3555555 37888876777777644
No 29
>PRK04406 hypothetical protein; Provisional
Probab=66.05 E-value=36 Score=22.54 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042472 70 NELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLS 135 (157)
Q Consensus 70 ~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~ 135 (157)
..+...+.+|...+.-.....+.|.+.+-. =-.++..|..+|..+..+++.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~---------------Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQ---------------QQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666655542 123455666666666555544
No 30
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.85 E-value=19 Score=23.28 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=22.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042472 64 HRQVRINELNQRHNELLCQLNEEKEWETMVKQMRTG 99 (157)
Q Consensus 64 ~~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~ 99 (157)
+....+++||..+.+.+.+++.+++....|...++.
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777776666666655543
No 31
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=65.34 E-value=27 Score=31.03 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=10.1
Q ss_pred EEEEeCCCCceeccCCCHHHHHHHh
Q 042472 22 LLEHHRSGRPFSFGHPSIEAAANRF 46 (157)
Q Consensus 22 lIVFSp~GK~fsFg~PSv~~Vi~Ry 46 (157)
||.|-| +|.=+|.-++++|--+
T Consensus 200 vVLFGp---p~~~~~n~~KD~iLv~ 221 (575)
T KOG4403|consen 200 VVLFGP---PYKTNHNWTKDFILVV 221 (575)
T ss_pred eEEecC---CcCCCcchhhhHHHHH
Confidence 456644 4444444444444433
No 32
>PRK02793 phi X174 lysis protein; Provisional
Probab=65.07 E-value=26 Score=22.97 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 65 RQVRINELNQRHNELLCQLNEEKEWETMVKQMR 97 (157)
Q Consensus 65 ~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~ 97 (157)
....|++||..+.+.+.+++.++++...|.+.+
T Consensus 20 Qe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 20 QEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554444444444444443333
No 33
>PRK00846 hypothetical protein; Provisional
Probab=65.03 E-value=26 Score=23.51 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLNEEKEWET 91 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e 91 (157)
.|++||..+.+.+.+++.++.+..
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=64.23 E-value=68 Score=26.84 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDDLHKTFLSKLNEK 140 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l 140 (157)
..++.++.++|..+...|......|..++.++
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999988888666554
No 35
>PRK04098 sec-independent translocase; Provisional
Probab=64.09 E-value=22 Score=27.15 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 114 LNHQELLQMGATIDDLHKTFLSKLNE 139 (157)
Q Consensus 114 L~~~EL~~le~~Le~l~~~v~~r~~~ 139 (157)
+++++|..+...+....+.+..-...
T Consensus 81 ~~~eel~~~~~~~~~~~~~~~~~~~~ 106 (158)
T PRK04098 81 LKFEELDDLKITAENEIKSIQDLLQD 106 (158)
T ss_pred cChHHHHHHhhhhhhcchhHHHHHhh
Confidence 78888888886666655555555443
No 36
>PHA00327 minor capsid protein
Probab=62.77 E-value=27 Score=26.89 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVK 94 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~ 94 (157)
++.+-.++.+++.++..+++..+.++
T Consensus 110 v~~l~~~~~r~~aelQnL~~q~r~in 135 (187)
T PHA00327 110 VQRLTYERKRMQAELQNLREQNRLIN 135 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677888888888887777766554
No 37
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=62.76 E-value=49 Score=24.40 Aligned_cols=76 Identities=13% Similarity=0.341 Sum_probs=40.8
Q ss_pred CHHHHHHHhhcCCCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhccCCCCCc--
Q 042472 38 SIEAAANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNELLCQLNEEKEWE---------TMVKQMRTGKESQPCW-- 106 (157)
Q Consensus 38 Sv~~Vi~Ryl~~~~~~~~~~~~~~e~~~~~~i~~l~~e~~~l~~el~~ek~~~---------e~L~~~~k~~~~~~~w-- 106 (157)
-+.+|++.|-...+ .+..++.++.+...++.+++.+- +.|.+..++-. .|
T Consensus 39 el~~iLe~y~~~~~----------------d~~~lr~~L~~YLD~IKm~RAkY~lENky~L~~tL~~LtkEVn---~Wr~ 99 (132)
T PF09432_consen 39 ELQSILEKYNTPST----------------DTEELRAQLDRYLDDIKMERAKYSLENKYSLQDTLNQLTKEVN---YWRK 99 (132)
T ss_pred HHHHHHHHHcCCCc----------------cHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHH
Confidence 37889999955221 13456777777777777666441 12222222110 23
Q ss_pred -ccCCCCCC----CHHHHHHHHHHHHHHHHHH
Q 042472 107 -WETPVDEL----NHQELLQMGATIDDLHKTF 133 (157)
Q Consensus 107 -~~~~ve~L----~~~EL~~le~~Le~l~~~v 133 (157)
| ++|+.| +..-+..+-+.++.++..+
T Consensus 100 ew-d~iE~~mFGD~pnSmkkMl~nveslk~~l 130 (132)
T PF09432_consen 100 EW-DNIEMLMFGDGPNSMKKMLQNVESLKSKL 130 (132)
T ss_pred HH-HHHHHHHhcCChHHHHHHHHHHHHHHHHh
Confidence 2 444444 5566666666666665443
No 38
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=61.51 E-value=1.2e+02 Score=27.25 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHH-----------HHHHHHHH---HHHHHHHHhccCCCCCcccCCCCCCCHHHHHH
Q 042472 66 QVRINELNQRHNELLC-----------QLNEEKEW---ETMVKQMRTGKESQPCWWETPVDELNHQELLQ 121 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~-----------el~~ek~~---~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~ 121 (157)
..-|..|..|+++|.. +-..++++ ..+|++.+. +.-+|+.|+-+||..
T Consensus 148 keLi~QLk~Ql~dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~--------lnl~i~~lsteelr~ 209 (621)
T KOG3759|consen 148 KELIKQLKEQLEDLERTAYENGEGELPQTVILEKQKAILDELREKLE--------LNLDIDKLSTEELRR 209 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhh--------ccCCcccccHHHHHH
Confidence 3446667777776633 11222333 334444443 335699999998864
No 39
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.11 E-value=69 Score=26.94 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=26.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDDLHKTFLSKLNEK 140 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l 140 (157)
.++++++.++|..++.+|......+..+..++
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999998888877776654
No 40
>PRK11637 AmiB activator; Provisional
Probab=61.07 E-value=79 Score=27.34 Aligned_cols=30 Identities=3% Similarity=0.131 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042472 116 HQELLQMGATIDDLHKTFLSKLNEKTANAS 145 (157)
Q Consensus 116 ~~EL~~le~~Le~l~~~v~~r~~~l~~~as 145 (157)
-.++..++..|+..+..+..++..+.+.+.
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~ 138 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDAAFRQGE 138 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 346666777777777777777777666554
No 41
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=60.54 E-value=38 Score=26.85 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=20.1
Q ss_pred CceeeEEEEeCCCCceeccCCCHHHHHHHhhc
Q 042472 17 PKQQSLLEHHRSGRPFSFGHPSIEAAANRFVG 48 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ryl~ 48 (157)
||+..|+|||-+.+- |++.+.+=|..
T Consensus 92 gaqa~vLVFSTTDr~------SFea~~~w~~k 117 (246)
T KOG4252|consen 92 GAQASVLVFSTTDRY------SFEATLEWYNK 117 (246)
T ss_pred cccceEEEEecccHH------HHHHHHHHHHH
Confidence 999999999998874 45666666644
No 42
>PRK02119 hypothetical protein; Provisional
Probab=60.51 E-value=46 Score=21.87 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042472 72 LNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLS 135 (157)
Q Consensus 72 l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~ 135 (157)
+...+.+|...+.-.....+.|.+.+-. --.++..|..+|..+..+++.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~---------------Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIE---------------QQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555432 123455666666666665554
No 43
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=60.40 E-value=67 Score=23.77 Aligned_cols=8 Identities=13% Similarity=-0.023 Sum_probs=3.8
Q ss_pred CCCCCccc
Q 042472 148 MAPPMCFR 155 (157)
Q Consensus 148 ~~~~~~~~ 155 (157)
++.|.+|+
T Consensus 128 pS~p~~~~ 135 (135)
T KOG4196|consen 128 PSSPEFAL 135 (135)
T ss_pred CccccccC
Confidence 33346653
No 44
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=59.57 E-value=28 Score=22.17 Aligned_cols=33 Identities=12% Similarity=-0.009 Sum_probs=24.4
Q ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042472 105 CWWETPVDELNHQELLQMGATIDDLHKTFLSKL 137 (157)
Q Consensus 105 ~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~ 137 (157)
+..+.|++.||++||.+.-..|+.=..+++..+
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999988777765555554443
No 45
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=58.39 E-value=33 Score=21.93 Aligned_cols=30 Identities=27% Similarity=0.208 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
+..++.++..++.+++.++++++.|+..+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888777777776665
No 46
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=56.68 E-value=7.7 Score=27.72 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=18.0
Q ss_pred cccccCceeeEEEEeCCCCceec-c
Q 042472 12 QHKIIPKQQSLLEHHRSGRPFSF-G 35 (157)
Q Consensus 12 ELSvldAeVAlIVFSp~GK~fsF-g 35 (157)
+|--++==+|...||+.||+.+| |
T Consensus 5 ~Lm~lpGv~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 5 KLMKLPGVVAAGEFSDDGKLVEYKG 29 (108)
T ss_pred HhhcCCCeEEEEEECCCCeEEeeec
Confidence 44445333788999999999998 5
No 47
>PRK11239 hypothetical protein; Provisional
Probab=56.09 E-value=42 Score=26.87 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=26.0
Q ss_pred CceeeEEEEeCCCCceeccC-CCHHHHHHHhhcCCC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH-PSIEAAANRFVGLNQ 51 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~-PSv~~Vi~Ryl~~~~ 51 (157)
|.+.+==+-+.++|+|.|.. .+|+.++++.....+
T Consensus 110 GPQT~gELRtRs~Rl~~F~dv~~Ve~~L~~L~~r~~ 145 (215)
T PRK11239 110 GAQTPGELRSRAARMYEFSDMAEVESTLEQLANRED 145 (215)
T ss_pred CCCChHHHHHhHhcCCcCCCHHHHHHHHHHHHhccC
Confidence 55555555677899999986 578999988876543
No 48
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=54.89 E-value=84 Score=23.18 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=25.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDDLHKTFLSKLNE 139 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~ 139 (157)
-++++|+.+||.++.+.++..-..-+.+.+.
T Consensus 90 i~iE~l~~~el~~~~~~~~~~~~~~~~~~~~ 120 (132)
T PF04120_consen 90 IDIEDLTEEELEEIRKRYERLAEQARERHDV 120 (132)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhhhhcch
Confidence 6899999999999999999888776655443
No 49
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.88 E-value=7 Score=31.41 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=11.6
Q ss_pred eeeEEEEeCCCCcee
Q 042472 19 QQSLLEHHRSGRPFS 33 (157)
Q Consensus 19 eVAlIVFSp~GK~fs 33 (157)
+=||-||||.|.+|.
T Consensus 5 draltvFSPDGhL~Q 19 (249)
T KOG0183|consen 5 DRALTVFSPDGHLFQ 19 (249)
T ss_pred ccceEEECCCCCEEe
Confidence 447888999888883
No 50
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.26 E-value=62 Score=21.15 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042472 72 LNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLS 135 (157)
Q Consensus 72 l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~ 135 (157)
+...+.+|...+.-.....+.|.+.+-. --.++..|..+|..+..+++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~---------------Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTA---------------HEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444455555554431 112344555566665555544
No 51
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.04 E-value=94 Score=23.22 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 113 ELNHQELLQMGATIDDLHKTFLSKLN 138 (157)
Q Consensus 113 ~L~~~EL~~le~~Le~l~~~v~~r~~ 138 (157)
..+.+|...+++......+..+.|+.
T Consensus 141 ~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 141 PVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999988887764
No 52
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=53.01 E-value=25 Score=23.80 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=25.2
Q ss_pred eeeEEEEeCCC--CceeccC-CCHHHHHHHhhcC
Q 042472 19 QQSLLEHHRSG--RPFSFGH-PSIEAAANRFVGL 49 (157)
Q Consensus 19 eVAlIVFSp~G--K~fsFg~-PSv~~Vi~Ryl~~ 49 (157)
.+-|+|.|..| |+|++-. ...+.++.+|...
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 57789999998 8888854 4799999999663
No 53
>COG4398 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.83 E-value=15 Score=31.06 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=30.8
Q ss_pred CceeeEEEEeCCCCce-eccCCCHH-HHHHHhhcCCC
Q 042472 17 PKQQSLLEHHRSGRPF-SFGHPSIE-AAANRFVGLNQ 51 (157)
Q Consensus 17 dAeVAlIVFSp~GK~f-sFg~PSv~-~Vi~Ryl~~~~ 51 (157)
++-|+-++||..||-| =||.|+.+ +.+++|+...|
T Consensus 320 ~~avGaLmFsC~GRG~~m~G~p~~Ds~~~~~~~~gip 356 (389)
T COG4398 320 GRAVGALLFTCNGRGRRMFGVPDHDASTIEELLGGIP 356 (389)
T ss_pred CccceeEEEEecCccccccCCCCccHHHHHHHhCCCc
Confidence 7889999999999999 68999886 79999998654
No 54
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.73 E-value=92 Score=26.09 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=11.1
Q ss_pred hhhhHHHHHHHHHHHHH
Q 042472 65 RQVRINELNQRHNELLC 81 (157)
Q Consensus 65 ~~~~i~~l~~e~~~l~~ 81 (157)
++..|.+|..|+.+|++
T Consensus 87 RetEI~eLksQL~RMrE 103 (305)
T PF15290_consen 87 RETEIDELKSQLARMRE 103 (305)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45567777777776654
No 55
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=49.65 E-value=1.4e+02 Score=24.44 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 65 RQVRINELNQRHNELLCQLNEEKEWETMVKQMR 97 (157)
Q Consensus 65 ~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~ 97 (157)
-..++..|..+|..+...++.++.+...-+..+
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL 210 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQL 210 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999998887765444444
No 56
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=49.28 E-value=20 Score=29.99 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=32.4
Q ss_pred hhhhccccccccc--CceeeEEEEeC-CCC-ceeccCC--CHHHHHHHhhc
Q 042472 4 EEQQQPANQHKII--PKQQSLLEHHR-SGR-PFSFGHP--SIEAAANRFVG 48 (157)
Q Consensus 4 ~~~~kKA~ELSvl--dAeVAlIVFSp-~GK-~fsFg~P--Sv~~Vi~Ryl~ 48 (157)
+++.++..+|.|| +.+.++-+|+. +++ +|-+||| +.+.+.+-|..
T Consensus 199 ~~~i~~~~~l~vLA~S~~~gv~~~~~~~~r~~~vQgHPEYd~~tL~~EY~R 249 (302)
T PRK05368 199 EEDIRAATGLEILAESEEAGVYLFASKDKREVFVTGHPEYDADTLAQEYFR 249 (302)
T ss_pred HHHhccCCCCEEEecCCCCCeEEEEeCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4556788899987 65777777776 554 4455999 56778888864
No 57
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.08 E-value=9.3 Score=30.68 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=14.3
Q ss_pred CceeeEEEEeCCCCce--ecc
Q 042472 17 PKQQSLLEHHRSGRPF--SFG 35 (157)
Q Consensus 17 dAeVAlIVFSp~GK~f--sFg 35 (157)
|-+=-+.||||-||+| +|+
T Consensus 8 gfDrhitIFspeGrLyQVEYa 28 (246)
T KOG0182|consen 8 GFDRHITIFSPEGRLYQVEYA 28 (246)
T ss_pred CccceEEEECCCceEEeeehH
Confidence 3344578999999999 454
No 58
>PRK00153 hypothetical protein; Validated
Probab=48.72 E-value=80 Score=21.88 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 042472 114 LNHQELLQMGAT-IDDLHKTFLSKLNEKTANASSSMAPPM 152 (157)
Q Consensus 114 L~~~EL~~le~~-Le~l~~~v~~r~~~l~~~ass~~~~~~ 152 (157)
.+.+.|+.+-.. +.++.+.+.....+.|...++...+|-
T Consensus 63 ~d~e~LedlI~~A~n~A~~~~~~~~~e~m~~~~gg~~~pg 102 (104)
T PRK00153 63 EDVEMLEDLILAAFNDALRKAEETMKEKMGKLTGGLLPPG 102 (104)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 456666655443 667788888888888888888776663
No 59
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.64 E-value=90 Score=28.43 Aligned_cols=16 Identities=6% Similarity=-0.203 Sum_probs=12.0
Q ss_pred CceeeEEEEeCCCCcee
Q 042472 17 PKQQSLLEHHRSGRPFS 33 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fs 33 (157)
|+.|.+.-.++ |+.|+
T Consensus 105 g~~v~l~R~~~-G~~~~ 120 (555)
T TIGR03545 105 GLAFGTERSTS-GAVPE 120 (555)
T ss_pred cCEEEEEEccC-CCCCC
Confidence 88887776665 88885
No 60
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.43 E-value=59 Score=22.80 Aligned_cols=30 Identities=7% Similarity=-0.145 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
...+++++..++.+++..+.+++.|...+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888888888888888888888877765
No 61
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.30 E-value=2.2e+02 Score=25.55 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTF 133 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v 133 (157)
...+.+.+....+|+++++.++...+.+..... -.-..|..++..+..|+..+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~---------------dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG---------------DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------------hHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666544332222221 02445667777777777766
No 62
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.29 E-value=44 Score=26.56 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHH
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQM 122 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~l 122 (157)
..++..|+.+++.++.+-...+.|.+.-+......++...|| ++-++.-|
T Consensus 145 ~~Rv~~L~~~~~~IrkEQ~~~R~RE~~FR~tSES~NsRvm~W-------sv~Q~vvL 194 (215)
T KOG1690|consen 145 EGRVRQLNSRLESIRKEQNLQREREETFRDTSESANSRVMWW-------SVAQLVVL 194 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcceeeeh-------hHHHHHHH
Confidence 457888999999998888887887777666665544444799 56665544
No 63
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.10 E-value=1.3e+02 Score=22.06 Aligned_cols=13 Identities=15% Similarity=0.036 Sum_probs=8.8
Q ss_pred EEEeCCCCceecc
Q 042472 23 LEHHRSGRPFSFG 35 (157)
Q Consensus 23 IVFSp~GK~fsFg 35 (157)
.-|.+.|..|+|+
T Consensus 14 ~G~~~~~~~~~~~ 26 (151)
T PF11559_consen 14 RGYPSDGLLFDSA 26 (151)
T ss_pred CCCCCCCccCccc
Confidence 3466777777777
No 64
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=43.15 E-value=1.4e+02 Score=22.42 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 042472 111 VDELNHQELLQMGATIDDLHKTFLSKLNEKTANASSSMAPP 151 (157)
Q Consensus 111 ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~~ass~~~~~ 151 (157)
++--.+++++.|-+.+.+++..|...++.+...+.+.-.+|
T Consensus 83 ~d~~kv~~~E~L~d~v~eLkeel~~el~~l~~~~~~~e~~~ 123 (146)
T PF05852_consen 83 FDRKKVEDLEKLTDRVEELKEELEFELERLQSAGGSQESLS 123 (146)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 45558999999999999999999999999875544444433
No 65
>KOG3366 consensus Mitochondrial F1F0-ATP synthase, subunit d/ATP7 [Energy production and conversion]
Probab=42.95 E-value=84 Score=24.29 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=10.6
Q ss_pred CCCCCCCHHHHHHH
Q 042472 109 TPVDELNHQELLQM 122 (157)
Q Consensus 109 ~~ve~L~~~EL~~l 122 (157)
.|++.|+++|+.+.
T Consensus 128 ~P~demT~ed~~ea 141 (172)
T KOG3366|consen 128 RPFDEMTMEDLNEA 141 (172)
T ss_pred CCcccccHHHHHHh
Confidence 56788888888764
No 66
>PF14071 YlbD_coat: Putative coat protein
Probab=42.91 E-value=58 Score=23.86 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCcccC
Q 042472 111 VDELNHQELLQMGATIDDLHKTFLSKLNEKTANA----SSSMAPPMCFRH 156 (157)
Q Consensus 111 ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~~a----ss~~~~~~~~~~ 156 (157)
|..|++++|+.--..+..+...|..=+.+..... +++..-||+||-
T Consensus 74 vKkmD~nq~q~hl~~~sqai~~vQ~~l~qFq~~~~~~~~~~~~~PFsFrk 123 (124)
T PF14071_consen 74 VKKMDVNQMQKHLNNVSQAIGSVQQVLSQFQGNGQKQSQRSPEHPFSFRK 123 (124)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccCC
Confidence 3458999999988888888888777666632211 233446999984
No 67
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.85 E-value=1e+02 Score=27.61 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMR 97 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~ 97 (157)
.+..+|+++++.++.+++...+..+.+++.+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KI 106 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRI 106 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3444555555555555544444444444333
No 68
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=42.45 E-value=14 Score=29.81 Aligned_cols=20 Identities=25% Similarity=0.169 Sum_probs=16.3
Q ss_pred ccc-CceeeEEEEeCCCCcee
Q 042472 14 KII-PKQQSLLEHHRSGRPFS 33 (157)
Q Consensus 14 Svl-dAeVAlIVFSp~GK~fs 33 (157)
||= |-+.+.-+|||.|++|.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQ 23 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQ 23 (254)
T ss_pred cccccccccceeeCCCCceeh
Confidence 354 77888899999999994
No 69
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=41.90 E-value=63 Score=20.75 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=24.2
Q ss_pred cccccc-CceeeEEEEeCCC-CceeccC----CCHHHHHHHhhcC
Q 042472 11 NQHKII-PKQQSLLEHHRSG-RPFSFGH----PSIEAAANRFVGL 49 (157)
Q Consensus 11 ~ELSvl-dAeVAlIVFSp~G-K~fsFg~----PSv~~Vi~Ryl~~ 49 (157)
.=|||. +..|-=..+...+ ..|.++. ||+.++|+.|...
T Consensus 37 ~~Lsv~~~~~~~h~~I~~~~~~~~~l~~~~~F~sl~eLI~~y~~~ 81 (84)
T smart00252 37 YVLSVRVKGKVKHYRIRRNEDGKFYLDGGRKFPSLVELVEHYQKN 81 (84)
T ss_pred EEEEEEECCEEEEEEEEECCCCcEEECCCCccCCHHHHHHHHhhC
Confidence 346765 5555443333333 4566654 7999999999663
No 70
>PRK13824 replication initiation protein RepC; Provisional
Probab=41.47 E-value=1.2e+02 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 114 LNHQELLQMGATIDDLHKTFLSKLN 138 (157)
Q Consensus 114 L~~~EL~~le~~Le~l~~~v~~r~~ 138 (157)
.+..+|..+...|..++..|.....
T Consensus 213 ~~~~~l~~l~~~l~~l~~~~~~~l~ 237 (404)
T PRK13824 213 ATLAELEPILDELEALREEVVNLLE 237 (404)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688888888888888877766544
No 71
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=41.20 E-value=1.4e+02 Score=21.70 Aligned_cols=78 Identities=8% Similarity=0.044 Sum_probs=43.2
Q ss_pred eccCCCHHHHHHHhhcCCCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCC
Q 042472 33 SFGHPSIEAAANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVD 112 (157)
Q Consensus 33 sFg~PSv~~Vi~Ryl~~~~~~~~~~~~~~e~~~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve 112 (157)
-+|.=+++.|+.-|-.. ..-...++......+.+++...+..+.+.+.... .-.
T Consensus 18 kIa~Vd~~~v~~~~~~~----------------k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~----------~~~ 71 (158)
T PF03938_consen 18 KIAVVDVDKVFQESPAG----------------KDAQAKLQEKFKALQKELQAKQKELQKLQQKLQS----------QKA 71 (158)
T ss_dssp CEEEE-HHHHHHHHHHH----------------HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------S--
T ss_pred cEEEeeHHHHHHhCHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------Hhh
Confidence 34555778888887331 1113456666667777777766666666555542 223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 042472 113 ELNHQELLQMGATIDDLHKTFLSK 136 (157)
Q Consensus 113 ~L~~~EL~~le~~Le~l~~~v~~r 136 (157)
.|+.++.......|......+...
T Consensus 72 ~ls~~~~~~~~~~l~~~~~~l~~~ 95 (158)
T PF03938_consen 72 TLSEEERQKRQQELQQKEQELQQF 95 (158)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Confidence 577777766666666555554443
No 72
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=40.67 E-value=32 Score=27.30 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=17.4
Q ss_pred EEEeC--CCCceeccCCCHHHHHHHhhc
Q 042472 23 LEHHR--SGRPFSFGHPSIEAAANRFVG 48 (157)
Q Consensus 23 IVFSp--~GK~fsFg~PSv~~Vi~Ryl~ 48 (157)
+|||+ +||+|+ |..+||+-|.+
T Consensus 154 ~V~sS~itGKLf~----s~~avieDF~~ 177 (238)
T PF10915_consen 154 TVFSSVITGKLFH----SKPAVIEDFEK 177 (238)
T ss_pred HHhhhhhcchhhc----ccHHHHHHHHH
Confidence 57777 599997 77888888865
No 73
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=40.42 E-value=1.8e+02 Score=22.75 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEK 140 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l 140 (157)
+.++.|..++..+.+++..++.....+...++.-. ..|+.+|+++=-+.|..-.++.+.|+..+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~----------s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELS----------SALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666555554454321 23678888777777777777777776653
No 74
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=39.95 E-value=1.1e+02 Score=25.11 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=44.8
Q ss_pred hccccccccc-CceeeEEEEeCCCCceeccCCCHHHHHHHhhcCCCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 042472 7 QQPANQHKII-PKQQSLLEHHRSGRPFSFGHPSIEAAANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNELLCQLNE 85 (157)
Q Consensus 7 ~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ryl~~~~~~~~~~~~~~e~~~~~~i~~l~~e~~~l~~el~~ 85 (157)
||||.+ ++- |.+.-+||.|-.||.|.=|--=.+....+.+... +.+ ..+. =..+.+-+..+|+.+..
T Consensus 54 ~~~cf~-~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~------~dd---~aR~--g~~lrr~Ik~~Q~~~t~ 121 (292)
T KOG1681|consen 54 FKECFD-SLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE------GDD---VARK--GRSLRRIIKRYQDTFTA 121 (292)
T ss_pred HHHHHH-hhccCCCceEEEEecCCcceecccCcchhhhhhccccc------cch---Hhhh--hHHHHHHHHHHHHHHHH
Confidence 445444 343 9999999999999999877432222333333321 111 1111 23466777777777777
Q ss_pred HHHHHHHHHHHH
Q 042472 86 EKEWETMVKQMR 97 (157)
Q Consensus 86 ek~~~e~L~~~~ 97 (157)
.+.--+.+-..+
T Consensus 122 ie~CpKPVIaav 133 (292)
T KOG1681|consen 122 IERCPKPVIAAV 133 (292)
T ss_pred HHhCChhHHHHH
Confidence 765544443333
No 75
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.79 E-value=1.9e+02 Score=22.84 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLNEE 86 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~e 86 (157)
++..+++++.+++++++..
T Consensus 94 rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666655555544
No 76
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.49 E-value=1e+02 Score=19.76 Aligned_cols=19 Identities=5% Similarity=0.093 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042472 118 ELLQMGATIDDLHKTFLSK 136 (157)
Q Consensus 118 EL~~le~~Le~l~~~v~~r 136 (157)
++..|+..|..+..+++.-
T Consensus 33 ~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 33 QIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455666666666555553
No 77
>PF13270 DUF4061: Domain of unknown function (DUF4061)
Probab=38.97 E-value=1.1e+02 Score=20.96 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=7.6
Q ss_pred CCCceeccC-CCH
Q 042472 28 SGRPFSFGH-PSI 39 (157)
Q Consensus 28 ~GK~fsFg~-PSv 39 (157)
+||+..||+ ||+
T Consensus 20 sGkl~aFG~~cs~ 32 (90)
T PF13270_consen 20 SGKLQAFGKECSM 32 (90)
T ss_pred hhHHHHcCCCCcH
Confidence 477777776 443
No 78
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=38.86 E-value=38 Score=24.82 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=26.0
Q ss_pred CceeeEEEEeCCCCceeccCC-CHHHHHHHhhcC
Q 042472 17 PKQQSLLEHHRSGRPFSFGHP-SIEAAANRFVGL 49 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~P-Sv~~Vi~Ryl~~ 49 (157)
...++-||+ ++|++..|-.| ++.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCCcCHHHHHHHCCCC
Confidence 566777777 78999999877 789999999554
No 79
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.51 E-value=1.2e+02 Score=25.43 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKT 132 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~ 132 (157)
+.+++.++..+...++..+.+...+...+..... --+.....+..|+..|+..+..+...
T Consensus 232 l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~----~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 232 LAELQEELEELEEKIEELEEQKQELLAEIAEAEK----IREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333322110 00123345777777777776666543
No 80
>PRK11281 hypothetical protein; Provisional
Probab=37.89 E-value=1.9e+02 Score=28.82 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=22.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 107 WETPVDELNHQELLQMGATIDDLHKTFLSKLNEK 140 (157)
Q Consensus 107 ~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l 140 (157)
+..+...++..+|++.-.+++..+..........
T Consensus 114 ~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~ 147 (1113)
T PRK11281 114 TRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEY 147 (1113)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788899888776666665555555555444
No 81
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=37.77 E-value=12 Score=29.47 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=11.8
Q ss_pred eEEEEeCCCCce--ecc
Q 042472 21 SLLEHHRSGRPF--SFG 35 (157)
Q Consensus 21 AlIVFSp~GK~f--sFg 35 (157)
.+-+|||.||+| +|+
T Consensus 4 ~~t~fsp~Grl~QveyA 20 (227)
T cd03750 4 SLTTFSPSGKLVQIEYA 20 (227)
T ss_pred CCceECCCCeEhHHHHH
Confidence 456899999999 554
No 82
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=37.62 E-value=17 Score=21.38 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=16.8
Q ss_pred ccCcee---eEEEEeCCCCceeccCCC
Q 042472 15 IIPKQQ---SLLEHHRSGRPFSFGHPS 38 (157)
Q Consensus 15 vldAeV---AlIVFSp~GK~fsFg~PS 38 (157)
|||..| +-....=.|+.|-|+++.
T Consensus 5 vcg~~v~~~~~~~~~y~G~~Y~FCS~~ 31 (47)
T PF04945_consen 5 VCGMKVPGNAAYSVEYNGRTYYFCSEG 31 (47)
T ss_dssp GGG-BE-----EEEEETTEEEEESSHH
T ss_pred CCCCEEccCccEEEEECCEEEEEcCHH
Confidence 567777 666677789999999974
No 83
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=37.58 E-value=18 Score=23.59 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=21.7
Q ss_pred cc-CceeeEEEEeCCCCceeccCCCHHHHH
Q 042472 15 II-PKQQSLLEHHRSGRPFSFGHPSIEAAA 43 (157)
Q Consensus 15 vl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi 43 (157)
++ .+..++++.++.|++ .|.++++..++
T Consensus 6 i~~~~~~~i~~~d~~g~I-~~~N~a~~~l~ 34 (113)
T PF00989_consen 6 ILENSPDGIFVIDEDGRI-LYVNQAAEELL 34 (113)
T ss_dssp HHHCSSSEEEEEETTSBE-EEECHHHHHHH
T ss_pred HHhcCCceEEEEeCcCeE-EEECHHHHHHH
Confidence 56 889999999999998 56666655444
No 84
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.51 E-value=2.2e+02 Score=23.27 Aligned_cols=11 Identities=9% Similarity=0.081 Sum_probs=7.7
Q ss_pred CceeeEEEEeC
Q 042472 17 PKQQSLLEHHR 27 (157)
Q Consensus 17 dAeVAlIVFSp 27 (157)
||++-+|....
T Consensus 57 GADlvlIATDa 67 (290)
T COG4026 57 GADLVLIATDA 67 (290)
T ss_pred cCCEEEEeecC
Confidence 77777776654
No 85
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=37.46 E-value=93 Score=24.67 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=11.7
Q ss_pred EEEeCCCCceec-cCCCHHHHHHHh
Q 042472 23 LEHHRSGRPFSF-GHPSIEAAANRF 46 (157)
Q Consensus 23 IVFSp~GK~fsF-g~PSv~~Vi~Ry 46 (157)
+++=+.+...=| |+|.|.++-+=+
T Consensus 122 M~y~~e~~~ilFl~sP~v~~l~el~ 146 (219)
T PF07701_consen 122 MVYLEEWDSILFLGSPVVSSLEELR 146 (219)
T ss_dssp EEEETTTTEEEEEEEE---TT----
T ss_pred EEEecCCCeEEEEcccccCCHHHHH
Confidence 456666666666 999776554444
No 86
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=37.43 E-value=1.2e+02 Score=19.75 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 042472 112 DELNHQELLQMGATIDDLHKTFL 134 (157)
Q Consensus 112 e~L~~~EL~~le~~Le~l~~~v~ 134 (157)
.+-+.++|+.++..+++..++++
T Consensus 43 ~~~g~~gl~~~~~e~~r~~~~~k 65 (66)
T PF07438_consen 43 RDNGYEGLEEYEIEIERIKKDFK 65 (66)
T ss_pred hccCcchHHHHHHHHHHHHHHhc
Confidence 34578899999999999888764
No 87
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=37.10 E-value=13 Score=28.89 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=10.6
Q ss_pred eEEEEeCCCCcee
Q 042472 21 SLLEHHRSGRPFS 33 (157)
Q Consensus 21 AlIVFSp~GK~fs 33 (157)
.+-+|||.||+|.
T Consensus 6 ~~~~fsp~Grl~Q 18 (213)
T cd03752 6 RTTIFSPEGRLYQ 18 (213)
T ss_pred CCceECCCCEEhH
Confidence 4567999999993
No 88
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=36.16 E-value=31 Score=18.92 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=14.8
Q ss_pred CceeeEEEEeCCCCceeccC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~ 36 (157)
++.-.-..|||.||-+-|++
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEE
T ss_pred CccccCEEEecCCCEEEEEe
Confidence 44556788999999998864
No 89
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.15 E-value=3.2e+02 Score=24.52 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQM 96 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~ 96 (157)
.+.+.+++.++..+..+.+.++++++.|++.
T Consensus 65 va~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 65 VAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557777777877777777777777777653
No 90
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=36.05 E-value=15 Score=28.38 Aligned_cols=14 Identities=14% Similarity=0.396 Sum_probs=11.0
Q ss_pred EEEEeCCCCce--ecc
Q 042472 22 LLEHHRSGRPF--SFG 35 (157)
Q Consensus 22 lIVFSp~GK~f--sFg 35 (157)
+=+|||.||+| +|+
T Consensus 5 ~~~fsp~Gr~~Qveya 20 (207)
T cd03755 5 ITVFSPDGHLFQVEYA 20 (207)
T ss_pred CceECCCCeEeHHHHH
Confidence 45799999999 554
No 91
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.00 E-value=2.4e+02 Score=26.20 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 71 ELNQRHNELLCQLNEEKEWETMVK 94 (157)
Q Consensus 71 ~l~~e~~~l~~el~~ek~~~e~L~ 94 (157)
.|...+++++.++++++.+.+.+.
T Consensus 440 ~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 440 ELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 92
>KOG4171 consensus Adenylate/guanylate kinase [Nucleotide transport and metabolism]
Probab=35.34 E-value=1.6e+02 Score=27.59 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=36.4
Q ss_pred EEEeCCCCceeccCCCHHHHHHHh-----hcCCCCCCCCCCchhhh--------hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 042472 23 LEHHRSGRPFSFGHPSIEAAANRF-----VGLNQPANDNTHPLVEV--------HRQVRINELNQRHNELLCQLNEEKEW 89 (157)
Q Consensus 23 IVFSp~GK~fsFg~PSv~~Vi~Ry-----l~~~~~~~~~~~~~~e~--------~~~~~i~~l~~e~~~l~~el~~ek~~ 89 (157)
+....+.-+---|+|+|+.+=+=+ ++.- |..|.+++++-. .-.-+++.++.+++++.++++.+|++
T Consensus 334 ~~i~e~~sIlflcSP~V~~LdeL~~~GLyLsDi-plHDatRDlILl~~Q~~aq~el~~~lE~~~~~Le~~~~~Le~EKkk 412 (671)
T KOG4171|consen 334 MYIPESDSILFLCSPVVDNLDELTGRGLYLSDI-PLHDATRDLVLLGQQRRAQLELNLELEKLKEKLEKMTRELEEEKKK 412 (671)
T ss_pred EEecCCCeEEEEcCcccCchHHHHhCCceeccC-CccccchhheecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444999776543333 3322 333444444311 11233455666677777778878777
Q ss_pred HHHH
Q 042472 90 ETMV 93 (157)
Q Consensus 90 ~e~L 93 (157)
...|
T Consensus 413 Td~L 416 (671)
T KOG4171|consen 413 TDTL 416 (671)
T ss_pred HHHH
Confidence 6544
No 93
>PRK00736 hypothetical protein; Provisional
Probab=35.25 E-value=1.2e+02 Score=19.45 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042472 118 ELLQMGATIDDLHKTFLS 135 (157)
Q Consensus 118 EL~~le~~Le~l~~~v~~ 135 (157)
++..|..+|..+..+++.
T Consensus 34 ~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 34 TVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666667766666655
No 94
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=35.10 E-value=66 Score=22.82 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHH
Q 042472 111 VDELNHQELLQMGATID 127 (157)
Q Consensus 111 ve~L~~~EL~~le~~Le 127 (157)
+++|+.+|++.|..+++
T Consensus 87 le~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 87 LEELSPEELEALQAEIE 103 (104)
T ss_pred HHhCCHHHHHHHHHHhc
Confidence 46799999999998876
No 95
>COG3644 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.96 E-value=52 Score=25.25 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=30.3
Q ss_pred ccc-CceeeEEEEe-CCCCceecc-CCCHHHHHHHhhcCC
Q 042472 14 KII-PKQQSLLEHH-RSGRPFSFG-HPSIEAAANRFVGLN 50 (157)
Q Consensus 14 Svl-dAeVAlIVFS-p~GK~fsFg-~PSv~~Vi~Ryl~~~ 50 (157)
.+. +++.-|+||. ++|++.+|- +-|..+|+-|+....
T Consensus 28 k~~~~~ea~vLiFDn~tgr~vdfDl~Gs~e~v~AR~~~~~ 67 (194)
T COG3644 28 KVQEPTEAQVLIFDNATGRPVDFDLSGSLEDVLARLLPAA 67 (194)
T ss_pred HhhcCccCCEEEeeCCCCCceeeecCCCHHHHHHhhcccc
Confidence 344 6777899999 899999994 668899999998754
No 96
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=34.88 E-value=2.3e+02 Score=25.33 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 042472 113 ELNHQELLQMGATIDDLHKTFLS 135 (157)
Q Consensus 113 ~L~~~EL~~le~~Le~l~~~v~~ 135 (157)
.|+.+|+.++.+++.+..-+|..
T Consensus 79 ~~T~d~~~~~~qqiAn~~lKv~~ 101 (514)
T PF11336_consen 79 GLTNDDATEMRQQIANAQLKVES 101 (514)
T ss_pred ccChHHHHHHHHHHHhhhhhHHH
Confidence 58899999999998876555543
No 97
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=34.87 E-value=33 Score=21.72 Aligned_cols=23 Identities=13% Similarity=0.132 Sum_probs=15.6
Q ss_pred EEEeCCCCceeccCC-CHHHHHHH
Q 042472 23 LEHHRSGRPFSFGHP-SIEAAANR 45 (157)
Q Consensus 23 IVFSp~GK~fsFg~P-Sv~~Vi~R 45 (157)
|++.|.|.+|...+| .+..|++.
T Consensus 53 v~i~~~~~~y~~v~~~~~~~il~~ 76 (77)
T cd02980 53 VVVYPDGVWYGRVTPEDVEEIVEE 76 (77)
T ss_pred EEEeCCCeEEccCCHHHHHHHHHh
Confidence 344478888888776 46677765
No 98
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=34.71 E-value=17 Score=28.37 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.1
Q ss_pred eEEEEeCCCCce
Q 042472 21 SLLEHHRSGRPF 32 (157)
Q Consensus 21 AlIVFSp~GK~f 32 (157)
++=+|||.||+|
T Consensus 4 ~~t~fsp~Grl~ 15 (211)
T cd03749 4 DVTTWSPQGRLF 15 (211)
T ss_pred CCceECCCCeEe
Confidence 345899999999
No 99
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=34.51 E-value=16 Score=28.34 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=11.0
Q ss_pred EEEEeCCCCce--ecc
Q 042472 22 LLEHHRSGRPF--SFG 35 (157)
Q Consensus 22 lIVFSp~GK~f--sFg 35 (157)
+=+|||.||+| +|+
T Consensus 6 ~~~fsp~G~l~Q~eya 21 (211)
T cd03756 6 ITVFSPDGRLYQVEYA 21 (211)
T ss_pred CceECCCCeEhHHHHH
Confidence 45799999999 553
No 100
>PF11800 RP-C_C: Replication protein C C-terminal region; InterPro: IPR021760 Replication protein C is involved in the early stages of viral DNA replication.
Probab=34.50 E-value=1.1e+02 Score=23.79 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccC
Q 042472 114 LNHQELLQMGATIDDLHKTFLSKLNEKTANASSSMAPPMCFRH 156 (157)
Q Consensus 114 L~~~EL~~le~~Le~l~~~v~~r~~~l~~~ass~~~~~~~~~~ 156 (157)
++.++|..+...|+.+...|...........-++.....+.||
T Consensus 21 ~~~~~L~~l~~~L~~l~~~v~~~le~~~~t~~~s~~~~qnerh 63 (207)
T PF11800_consen 21 ASLADLEALLDELEALLEEVENALESQEKTEEMSGNDSQNERH 63 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccccccc
Confidence 7999999999999999999999887655444444445555555
No 101
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=34.05 E-value=25 Score=30.66 Aligned_cols=17 Identities=18% Similarity=0.301 Sum_probs=14.8
Q ss_pred eEEEEeCCCCce-eccCC
Q 042472 21 SLLEHHRSGRPF-SFGHP 37 (157)
Q Consensus 21 AlIVFSp~GK~f-sFg~P 37 (157)
.=|+|||.|||| +.|++
T Consensus 180 ~~l~f~pDG~Lyvs~G~~ 197 (399)
T COG2133 180 GRLVFGPDGKLYVTTGSN 197 (399)
T ss_pred ccEEECCCCcEEEEeCCC
Confidence 358999999999 88887
No 102
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=34.00 E-value=3.4e+02 Score=25.94 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042472 115 NHQELLQMGATIDDLHKTFLSKLNEKTAN 143 (157)
Q Consensus 115 ~~~EL~~le~~Le~l~~~v~~r~~~l~~~ 143 (157)
-.+++++|+-.|.+++..-+.++++|+..
T Consensus 930 k~Ee~EELrlDl~dlK~mYk~QIdeLl~~ 958 (961)
T KOG4673|consen 930 KDEELEELRLDLVDLKEMYKEQIDELLNK 958 (961)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 35788999999999999999999998864
No 103
>PRK04654 sec-independent translocase; Provisional
Probab=33.82 E-value=1.3e+02 Score=24.00 Aligned_cols=8 Identities=13% Similarity=-0.027 Sum_probs=4.9
Q ss_pred eeEEEEeC
Q 042472 20 QSLLEHHR 27 (157)
Q Consensus 20 VAlIVFSp 27 (157)
||||||-|
T Consensus 15 VALlV~GP 22 (214)
T PRK04654 15 VALVVLGP 22 (214)
T ss_pred HHHHhcCc
Confidence 46666665
No 104
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=33.31 E-value=1.7e+02 Score=22.89 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=36.3
Q ss_pred ccCceeeEEEEeC-CCCceec-cCC-CHHHHHHHhhcCCCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 15 IIPKQQSLLEHHR-SGRPFSF-GHP-SIEAAANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNELLCQLNEEKEWET 91 (157)
Q Consensus 15 vldAeVAlIVFSp-~GK~fsF-g~P-Sv~~Vi~Ryl~~~~~~~~~~~~~~e~~~~~~i~~l~~e~~~l~~el~~ek~~~e 91 (157)
|-|++|-.+-+.. ....|+| |+| .++..++.|..-- .....+.++...+..|..++..-+.|..
T Consensus 91 imGV~vP~~~~~~~~~~~Y~~~~t~~~lD~a~~~~~~ll-------------~~~i~lAe~E~~l~~L~~ei~kT~rRVN 157 (201)
T PRK02195 91 IAGVEVPILDSIEFEIIEYSLLNTPIWVDTGIELLKELV-------------QLKIEAEVLQERLLLLEEELRKTTQRVN 157 (201)
T ss_pred EeeeeeceeeeeecCCCCcCCccCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777766533 3456877 555 5888888884421 0112234444555555555555455544
Q ss_pred HHH
Q 042472 92 MVK 94 (157)
Q Consensus 92 ~L~ 94 (157)
.|.
T Consensus 158 alE 160 (201)
T PRK02195 158 LFE 160 (201)
T ss_pred HHH
Confidence 443
No 105
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.27 E-value=2.2e+02 Score=23.23 Aligned_cols=7 Identities=14% Similarity=0.373 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 042472 133 FLSKLNE 139 (157)
Q Consensus 133 v~~r~~~ 139 (157)
++.|.++
T Consensus 196 L~~r~~E 202 (290)
T COG4026 196 LKKRWDE 202 (290)
T ss_pred HHHHHHH
Confidence 3444433
No 106
>PF11236 DUF3037: Protein of unknown function (DUF3037); InterPro: IPR021398 This bacterial family of proteins has no known function.
Probab=33.23 E-value=37 Score=24.21 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=16.8
Q ss_pred ceeeEEEEeCCCCceec-cCCCH
Q 042472 18 KQQSLLEHHRSGRPFSF-GHPSI 39 (157)
Q Consensus 18 AeVAlIVFSp~GK~fsF-g~PSv 39 (157)
+.||||+|+|.-+...| -+++.
T Consensus 16 vNVGVvl~~~~~~~l~~r~~~~~ 38 (118)
T PF11236_consen 16 VNVGVVLFCPEQGFLDFRFHLDR 38 (118)
T ss_pred EEEEEEEEeCCCCeEEEEEeCCH
Confidence 57999999998777666 35555
No 107
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=33.16 E-value=1.8e+02 Score=20.65 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 113 ELNHQELLQMGATIDDLHKTFLSKLNEK 140 (157)
Q Consensus 113 ~L~~~EL~~le~~Le~l~~~v~~r~~~l 140 (157)
+..-+++.++...++.+++.++.|+...
T Consensus 33 ~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 33 SLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577889999999998888888887553
No 108
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.01 E-value=1.3e+02 Score=27.04 Aligned_cols=86 Identities=13% Similarity=0.075 Sum_probs=48.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 042472 65 RQVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQP--CWWETPVDELNHQELLQMGATIDDLHKTFLSKL--NEK 140 (157)
Q Consensus 65 ~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~--~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~--~~l 140 (157)
.++++..|+..+..+++++..++..-+..+...-....++ ..-...+++--+..+++++..|+.+-..++.+. ..-
T Consensus 291 geayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~ 370 (521)
T KOG1937|consen 291 GEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEK 370 (521)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4566777777777777766666544332111110000000 011233444448899999999999988888654 345
Q ss_pred HhhcCCCCCC
Q 042472 141 TANASSSMAP 150 (157)
Q Consensus 141 ~~~ass~~~~ 150 (157)
++.+++.+++
T Consensus 371 Lrsele~lp~ 380 (521)
T KOG1937|consen 371 LRSELEKLPD 380 (521)
T ss_pred HHHHHhcCCc
Confidence 6666666665
No 109
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=33.01 E-value=40 Score=22.43 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=20.1
Q ss_pred CceeeEEEEeCCCCceeccCCCHHHHHH
Q 042472 17 PKQQSLLEHHRSGRPFSFGHPSIEAAAN 44 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~PSv~~Vi~ 44 (157)
+-.+.+.|||+ ||+.-.|..|++++-.
T Consensus 47 ~p~~t~~IF~s-Gki~itGaks~~~~~~ 73 (86)
T PF00352_consen 47 NPKATVLIFSS-GKIVITGAKSEEEAKK 73 (86)
T ss_dssp TTTEEEEEETT-SEEEEEEESSHHHHHH
T ss_pred CCcEEEEEEcC-CEEEEEecCCHHHHHH
Confidence 45677888876 9999999877665443
No 110
>PTZ00246 proteasome subunit alpha; Provisional
Probab=32.49 E-value=16 Score=29.31 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=12.9
Q ss_pred eeeEEEEeCCCCce--ecc
Q 042472 19 QQSLLEHHRSGRPF--SFG 35 (157)
Q Consensus 19 eVAlIVFSp~GK~f--sFg 35 (157)
+-.+-+|||.||+| +|+
T Consensus 6 d~~~~~fsp~Grl~QvEYA 24 (253)
T PTZ00246 6 DSRTTTFSPEGRLYQVEYA 24 (253)
T ss_pred CCCCceECCCCEEhHHHHH
Confidence 44567899999999 554
No 111
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=32.36 E-value=2.1e+02 Score=21.26 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEKTA 142 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~ 142 (157)
+..+...+.++..++...+...+.|.+....... -+.+|..+...+..+...+...+.++.-
T Consensus 61 l~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~------------kv~eLE~~~~~~~~~l~~~E~ek~q~~e 122 (140)
T PF10473_consen 61 LEELTSELNQLELELDTLRSEKENLDKELQKKQE------------KVSELESLNSSLENLLQEKEQEKVQLKE 122 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555544444321111 3556666666666666655555544433
No 112
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.21 E-value=3e+02 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQ 95 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~ 95 (157)
++.+..++.+++.+++..+.+...|..
T Consensus 80 l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 80 IRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 113
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=32.15 E-value=2.1e+02 Score=21.75 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=29.5
Q ss_pred ccCCC-HHHHHHHhhcCCCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 34 FGHPS-IEAAANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNELLCQLNEEKEWETMVK 94 (157)
Q Consensus 34 Fg~PS-v~~Vi~Ryl~~~~~~~~~~~~~~e~~~~~~i~~l~~e~~~l~~el~~ek~~~e~L~ 94 (157)
|=.|+ |.+.+.+-++..+.. .+...+.+.+..++..+.++++.+.+....+.
T Consensus 32 ~L~P~~v~~~v~~~~~~~~~~---------~~~~~~~~~l~~~l~~~~~el~~le~~k~~id 84 (180)
T PF04678_consen 32 YLRPKQVKEAVHRLLPLLNVE---------EYQNSRERQLRKRLEELRQELAPLEKIKQEID 84 (180)
T ss_pred eECHHHHHHHHHHHhccccch---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55674 777777776643211 12233455667777777777766554444333
No 114
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=31.88 E-value=21 Score=27.86 Aligned_cols=11 Identities=27% Similarity=0.377 Sum_probs=9.5
Q ss_pred EEEEeCCCCce
Q 042472 22 LLEHHRSGRPF 32 (157)
Q Consensus 22 lIVFSp~GK~f 32 (157)
+=+|||.||+|
T Consensus 8 ~t~fsp~Grl~ 18 (212)
T cd03751 8 ASTFSPDGRVF 18 (212)
T ss_pred CceECCCCcch
Confidence 45799999999
No 115
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=31.76 E-value=21 Score=27.96 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=11.1
Q ss_pred EEEEeCCCCce--ecc
Q 042472 22 LLEHHRSGRPF--SFG 35 (157)
Q Consensus 22 lIVFSp~GK~f--sFg 35 (157)
+=+|||.||+| +|+
T Consensus 7 ~~~f~p~Grl~Qieya 22 (224)
T TIGR03633 7 ITVFSPDGRLYQVEYA 22 (224)
T ss_pred CceECCCCeEeHHHHH
Confidence 45799999999 554
No 116
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=31.65 E-value=45 Score=23.47 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=18.2
Q ss_pred ccccccCceeeEEEEeCCCCceeccCC
Q 042472 11 NQHKIIPKQQSLLEHHRSGRPFSFGHP 37 (157)
Q Consensus 11 ~ELSvldAeVAlIVFSp~GK~fsFg~P 37 (157)
.||-=++-=+|.=.|||.||+.+|-.+
T Consensus 6 deLlqi~Gv~AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 6 DELLQIKGVMAAGEFSPDGKLVEYKGD 32 (109)
T ss_pred HHHhCccceeEeceeCCCCceEEeeCC
Confidence 344333223667789999999999544
No 117
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=31.52 E-value=1e+02 Score=29.47 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTF 133 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v 133 (157)
.....|++.++...+++..++...+++.-.++.++....-| .+|++|=++.|+.-..++..++..|
T Consensus 213 ~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w-~pvgdl~idsl~~h~e~~~~~~~ei 278 (966)
T KOG4286|consen 213 LHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSW-QPVGDLLIDSLQDHLEKVKALRGEI 278 (966)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcc-ccHHHHHHhHHHHHHHHHHHHHhhc
Confidence 33455666666666667666666676766666543322335 7899998888887776666665553
No 118
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=31.17 E-value=38 Score=27.60 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.7
Q ss_pred cCceeeEEEEeCCCCceeccCCC
Q 042472 16 IPKQQSLLEHHRSGRPFSFGHPS 38 (157)
Q Consensus 16 ldAeVAlIVFSp~GK~fsFg~PS 38 (157)
+|.+|+|||..+.|++|--|.+.
T Consensus 139 ~g~~v~VIItDt~gr~~R~G~~g 161 (243)
T TIGR01916 139 TGVDVGVIITDTNGRPFREGQVG 161 (243)
T ss_pred HCCCEEEEEECCCCCccccCCCC
Confidence 49999999999999999988763
No 119
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=30.47 E-value=27 Score=25.33 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=16.2
Q ss_pred EEEEeCCCCceeccCCCHHHHHHH
Q 042472 22 LLEHHRSGRPFSFGHPSIEAAANR 45 (157)
Q Consensus 22 lIVFSp~GK~fsFg~PSv~~Vi~R 45 (157)
+=||||.|...||-+- +.|+..
T Consensus 72 vHvfSpDG~~lSFTYN--DhVmhe 93 (122)
T PF12566_consen 72 VHVFSPDGSWLSFTYN--DHVMHE 93 (122)
T ss_pred ceEECCCCCEEEEEec--chhhcc
Confidence 4589999999999764 344443
No 120
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.09 E-value=2.8e+02 Score=22.02 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHH
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQEL 119 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL 119 (157)
..-+.|+.+|+.....-+....|...++..-..-- .=|+..++..+=..|
T Consensus 64 ~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF---~EWe~EL~~Y~~~sL 113 (201)
T PF11172_consen 64 DKYNALNDEYESSEDAAEEVSDRIDAVEDVADALF---DEWEQELDQYSNASL 113 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCHHH
Confidence 34566777777777766666666665555443211 126666655544433
No 121
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.05 E-value=2.2e+02 Score=26.17 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=36.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHH------HHHHHHHHHHHHHHHHH
Q 042472 65 RQVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQ------ELLQMGATIDDLHKTFL 134 (157)
Q Consensus 65 ~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~------EL~~le~~Le~l~~~v~ 134 (157)
....+..++.++++-..+++.+++.+..|+..+... ..-++||+.|+.+ +|..+..+++.+.+.|-
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q----~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ----GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777776666432 2334555555432 33444444444444433
No 122
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=30.01 E-value=69 Score=28.59 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=23.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDDLHKTFLSK 136 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~l~~~v~~r 136 (157)
-.|.+|+-+||..|...||.++++|.+.
T Consensus 86 lkvG~LskdeLm~LasDLeKLk~Kv~rt 113 (533)
T PF00843_consen 86 LKVGDLSKDELMELASDLEKLKKKVQRT 113 (533)
T ss_dssp EEBTTB-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 4578899999999999999999998754
No 123
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=29.87 E-value=56 Score=25.06 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.5
Q ss_pred CceeeEEEEeCCCCceeccCCCHH
Q 042472 17 PKQQSLLEHHRSGRPFSFGHPSIE 40 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~PSv~ 40 (157)
+-.+++.|||+ ||+..-|.-|++
T Consensus 45 ~Pk~t~lIF~S-GKiv~tGaks~~ 67 (174)
T cd04518 45 DPKIAALIFRS-GKMVCTGAKSVE 67 (174)
T ss_pred CCcEEEEEECC-CeEEEEccCCHH
Confidence 66789999987 999999987754
No 124
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=29.45 E-value=25 Score=27.46 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=11.3
Q ss_pred eeEEEEeCCCCcee
Q 042472 20 QSLLEHHRSGRPFS 33 (157)
Q Consensus 20 VAlIVFSp~GK~fs 33 (157)
-.+-+|||.||+|.
T Consensus 4 ~~~~~fsp~Grl~Q 17 (215)
T cd03754 4 RHITIFSPEGRLYQ 17 (215)
T ss_pred CCCeeECCCCeEeH
Confidence 34678999999994
No 125
>PHA01750 hypothetical protein
Probab=29.42 E-value=1.3e+02 Score=19.68 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 72 LNQRHNELLCQLNEEKEWETMVKQM 96 (157)
Q Consensus 72 l~~e~~~l~~el~~ek~~~e~L~~~ 96 (157)
-++++..|..+++..+.+..++++.
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~q 64 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQ 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4556666666666665554444443
No 126
>PLN03194 putative disease resistance protein; Provisional
Probab=29.36 E-value=34 Score=26.78 Aligned_cols=25 Identities=4% Similarity=-0.072 Sum_probs=17.5
Q ss_pred CceeeEEEEeCCCCceeccC--CCHHHHHHHh
Q 042472 17 PKQQSLLEHHRSGRPFSFGH--PSIEAAANRF 46 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~--PSv~~Vi~Ry 46 (157)
.+.++|||||| .|++ -|.++++.=+
T Consensus 80 eSri~IvVfS~-----~Ya~S~WCLdEL~~I~ 106 (187)
T PLN03194 80 NCKVGVAVFSP-----RYCESYFCLHELALIM 106 (187)
T ss_pred hCeEEEEEECC-----CcccchhHHHHHHHHH
Confidence 89999999999 4543 2566555544
No 127
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=29.22 E-value=51 Score=26.31 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=30.4
Q ss_pred cccccc-CceeeEEEEeCC---CCceeccCCCHHHHHHHhhc
Q 042472 11 NQHKII-PKQQSLLEHHRS---GRPFSFGHPSIEAAANRFVG 48 (157)
Q Consensus 11 ~ELSvl-dAeVAlIVFSp~---GK~fsFg~PSv~~Vi~Ryl~ 48 (157)
.|.+++ |=++.||+.||+ +..--||.-..+.||..|.+
T Consensus 46 de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~ 87 (214)
T PF10491_consen 46 DEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKP 87 (214)
T ss_pred HHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHH
Confidence 467887 999999999986 34458899889999988865
No 128
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.22 E-value=4.6e+02 Score=24.18 Aligned_cols=57 Identities=9% Similarity=0.221 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 042472 72 LNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTF 133 (157)
Q Consensus 72 l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v 133 (157)
+...++.+..+++.-....+.|+.....-.- --...+++.+|.+.+-...+.+.+.|
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~-----~Ie~Q~iS~~dve~mn~Er~~l~r~l 348 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKK-----QIELQGISGEDVERMNLERNKLKREL 348 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555544432110 13344666666666655555444443
No 129
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=29.09 E-value=4.3e+02 Score=23.75 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQ 95 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~ 95 (157)
+.++++..+.++++++..+++.++.|.+
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666655444443
No 130
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=29.01 E-value=31 Score=18.37 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=12.4
Q ss_pred CceeeEEEEeCCCCceeccCCC
Q 042472 17 PKQQSLLEHHRSGRPFSFGHPS 38 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~PS 38 (157)
|..=++++.+ .|++|.+|..+
T Consensus 7 G~~ht~al~~-~g~v~~wG~n~ 27 (30)
T PF13540_consen 7 GGYHTCALTS-DGEVYCWGDNN 27 (30)
T ss_dssp ESSEEEEEE--TTEEEEEE--T
T ss_pred cCCEEEEEEc-CCCEEEEcCCc
Confidence 4444555554 69999999754
No 131
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=28.95 E-value=1.4e+02 Score=22.51 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDDLHKTFLSKL 137 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~l~~~v~~r~ 137 (157)
-|+..||+++|.+++++++.=...+..-.
T Consensus 8 idltkLsleQL~~lk~q~dqEl~~lq~Sl 36 (153)
T KOG3048|consen 8 IDLTKLSLEQLGALKKQFDQELNFLQDSL 36 (153)
T ss_pred CChhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999998775554444433
No 132
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=28.92 E-value=2.4e+02 Score=20.78 Aligned_cols=28 Identities=11% Similarity=0.275 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 111 VDELNHQELLQMGATIDDLHKTFLSKLN 138 (157)
Q Consensus 111 ve~L~~~EL~~le~~Le~l~~~v~~r~~ 138 (157)
.+.|+.+.|..|-++|+.=++.+...+.
T Consensus 48 ye~Ms~~~l~~llkqLEkeK~~Le~qlk 75 (129)
T PF15372_consen 48 YEQMSVESLNQLLKQLEKEKRSLENQLK 75 (129)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999988777666543
No 133
>PRK11637 AmiB activator; Provisional
Probab=28.76 E-value=3.8e+02 Score=23.10 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042472 118 ELLQMGATIDDLHKTFLSK 136 (157)
Q Consensus 118 EL~~le~~Le~l~~~v~~r 136 (157)
++..++..|..+...+..+
T Consensus 104 ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 104 QIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 134
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=28.67 E-value=35 Score=20.53 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=21.9
Q ss_pred ccc-CceeeEEEEeCCCCceeccCCCHHHHHH
Q 042472 14 KII-PKQQSLLEHHRSGRPFSFGHPSIEAAAN 44 (157)
Q Consensus 14 Svl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~ 44 (157)
+|+ .+..+|+|+. +| .+.|++|....+..
T Consensus 5 ~l~~~~~~~i~i~d-~~-~i~~~N~~~~~l~g 34 (64)
T PF13188_consen 5 SLFDNSPDGILIID-GG-RIIYVNPAFEELFG 34 (64)
T ss_dssp HHHCCSSSEEEEEE-TS-BEEEE-HHHHHHHC
T ss_pred HHHHcCccceEEEE-CC-ChHHhhHHHHHHhC
Confidence 355 7889999999 66 77888888776665
No 135
>CHL00020 psbN photosystem II protein N
Probab=28.39 E-value=4.1 Score=24.34 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=11.6
Q ss_pred eeEEEEeCCC-Cce-eccCCC
Q 042472 20 QSLLEHHRSG-RPF-SFGHPS 38 (157)
Q Consensus 20 VAlIVFSp~G-K~f-sFg~PS 38 (157)
|+.+++|-+| -+| +||-||
T Consensus 11 i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 11 ISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred HHHHHHHhhheeeeeccCCch
Confidence 3445555665 455 788887
No 136
>PF07014 Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro: IPR009743 This entry represents the C terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance [].
Probab=28.29 E-value=48 Score=26.88 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=12.0
Q ss_pred HHHhhcCCCCCCCCcccCC
Q 042472 139 EKTANASSSMAPPMCFRHK 157 (157)
Q Consensus 139 ~l~~~ass~~~~~~~~~~~ 157 (157)
+|-+. |++.+.|+|||.+
T Consensus 120 qL~ik-s~~~~~afCfRS~ 137 (261)
T PF07014_consen 120 QLAIK-SAPETAAFCFRSK 137 (261)
T ss_pred Hhccc-cCCCCcchhhhHH
Confidence 33343 5557889999964
No 137
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=28.24 E-value=1.3e+02 Score=22.67 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=12.7
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDD 128 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~ 128 (157)
.-+.+|+.+|+..+...|+.
T Consensus 56 ~~~~~Lt~~qi~~l~~~i~~ 75 (154)
T PTZ00134 56 KRAGELTAEEIEKIVEIIAN 75 (154)
T ss_pred CCcccCCHHHHHHHHHHHhc
Confidence 44566666666666666654
No 138
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=28.02 E-value=1.9e+02 Score=19.23 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 72 LNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEKT 141 (157)
Q Consensus 72 l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~ 141 (157)
|..-+..|+.++.-++.....|+...+.. =..++...=..|+..|+.+.+.+..+.++|.
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~----------d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQM----------DPSLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666555521 1246888888999999999999999988874
No 139
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=27.85 E-value=47 Score=26.87 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=17.0
Q ss_pred CceeeEEEEeCCCCceeccC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~ 36 (157)
|.+|-+||++..||.|+-|.
T Consensus 52 d~~vrvvVl~g~g~~FcaG~ 71 (276)
T PRK05864 52 DNSVRVVVLTGAGRGFSSGA 71 (276)
T ss_pred CCCceEEEEECCCCCeecCc
Confidence 77899999999999887664
No 140
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=27.28 E-value=20 Score=27.83 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=10.7
Q ss_pred EEEEeCCCCce--ecc
Q 042472 22 LLEHHRSGRPF--SFG 35 (157)
Q Consensus 22 lIVFSp~GK~f--sFg 35 (157)
+=+|||.||+| +|+
T Consensus 5 ~~~f~p~G~~~Q~eya 20 (213)
T cd03753 5 VNTFSPEGRLFQVEYA 20 (213)
T ss_pred CccCCCCCeEhHHHHH
Confidence 34799999999 553
No 141
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=27.10 E-value=3.9e+02 Score=22.69 Aligned_cols=98 Identities=19% Similarity=0.194 Sum_probs=55.7
Q ss_pred chhhhcccccc--ccc-CceeeEEEEeCCCCceeccCCCHHHHHHHhhcCCCCCCCCCCchhhhhhhhhHHHHHHHHHHH
Q 042472 3 HEEQQQPANQH--KII-PKQQSLLEHHRSGRPFSFGHPSIEAAANRFVGLNQPANDNTHPLVEVHRQVRINELNQRHNEL 79 (157)
Q Consensus 3 ~~~~~kKA~EL--Svl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ryl~~~~~~~~~~~~~~e~~~~~~i~~l~~e~~~l 79 (157)
-.|||.|...| +|| .=. -|||+..|+|. |+|. + .+..+++ | +.+|...+..+
T Consensus 126 l~eQ~~kD~~LiD~IaE~~~---QvFs~~ckLFP---~DVq-i----~S~~~lP-D-------------~seLe~~~s~~ 180 (325)
T PF06694_consen 126 LDEQFAKDIQLIDAIAEKQQ---QVFSEECKLFP---PDVQ-I----QSIYPLP-D-------------VSELEKKASEL 180 (325)
T ss_pred HHHHHHHHHHHHHHHHHhHH---HHHhhhcCcCC---HHHh-h----ccCCCCC-C-------------HHHHHHHHHHH
Confidence 35788888887 566 322 68999999997 4553 2 2222221 1 33455555555
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 042472 80 LCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLS 135 (157)
Q Consensus 80 ~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~ 135 (157)
.+++...+.....|+-. |--.| +.-..+-..+|+..|+.+...++.
T Consensus 181 sk~Lq~lqq~v~~Lask---------~~y~p-d~~~~e~~~~Lr~~L~tflq~~~~ 226 (325)
T PF06694_consen 181 SKQLQSLQQQVAELASK---------HPYNP-DEEYVEKESQLRLELETFLQTAAG 226 (325)
T ss_pred HHHHHHHHHHHHHHHhc---------CCCCc-chhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444321 22233 555556666788888877776543
No 142
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=26.83 E-value=1.2e+02 Score=20.64 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=19.8
Q ss_pred eEEEEeCCCCc-eeccCCCHHHHHHHhhcCCC
Q 042472 21 SLLEHHRSGRP-FSFGHPSIEAAANRFVGLNQ 51 (157)
Q Consensus 21 AlIVFSp~GK~-fsFg~PSv~~Vi~Ryl~~~~ 51 (157)
.+|++--.|=- |..++++++.++++|+....
T Consensus 64 ~lvt~~g~gHg~~~~~s~C~~~~v~~yl~~G~ 95 (103)
T PF08386_consen 64 RLVTVDGAGHGVYAGGSPCVDKAVDDYLLDGT 95 (103)
T ss_pred eEEEEeccCcceecCCChHHHHHHHHHHHcCC
Confidence 34444444422 22468899999999988543
No 143
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=26.70 E-value=53 Score=26.58 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.4
Q ss_pred CceeeEEEEeCCCCceeccC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~ 36 (157)
|.+|-+||++.+|+.|+-|.
T Consensus 50 d~~vrvvVltg~g~~FcaG~ 69 (275)
T PLN02664 50 NPNVSVIILSGAGDHFCSGI 69 (275)
T ss_pred CCCcEEEEEECCCCceeeCc
Confidence 77899999999999888775
No 144
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.56 E-value=68 Score=25.21 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=19.9
Q ss_pred eEEEEeCC-CCceeccCCCHHHHHHHhhc
Q 042472 21 SLLEHHRS-GRPFSFGHPSIEAAANRFVG 48 (157)
Q Consensus 21 AlIVFSp~-GK~fsFg~PSv~~Vi~Ryl~ 48 (157)
-.||+||+ |.+-++|. +-++|++|..
T Consensus 47 d~iviSPGPG~P~d~G~--~~~~i~~~~~ 73 (191)
T COG0512 47 DAIVISPGPGTPKDAGI--SLELIRRFAG 73 (191)
T ss_pred CEEEEcCCCCChHHcch--HHHHHHHhcC
Confidence 37999998 77777764 5679999944
No 145
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=26.35 E-value=83 Score=19.62 Aligned_cols=31 Identities=6% Similarity=0.275 Sum_probs=24.4
Q ss_pred eeEEEEeCCCCceecc---CCCHHHHHHHhhcCC
Q 042472 20 QSLLEHHRSGRPFSFG---HPSIEAAANRFVGLN 50 (157)
Q Consensus 20 VAlIVFSp~GK~fsFg---~PSv~~Vi~Ryl~~~ 50 (157)
+-|.|-+++|+.+.|- +-.+..++++|....
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~ 34 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKK 34 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhh
Confidence 4588999999999883 336899999996643
No 146
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=26.29 E-value=1.2e+02 Score=25.28 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=29.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042472 107 WETPVDELNHQELLQMGATIDDLHKTFLSKLNEKTAN 143 (157)
Q Consensus 107 ~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~~ 143 (157)
--+.+..|+++||.+|...|......|-..+...+.+
T Consensus 212 SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQE 248 (285)
T PF06937_consen 212 SREELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQE 248 (285)
T ss_pred CHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999988888887777665544
No 147
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.27 E-value=1.9e+02 Score=19.62 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
..+..|..++..++.++...+.+...++..++
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777766666555554443
No 148
>PRK09039 hypothetical protein; Validated
Probab=25.65 E-value=4.1e+02 Score=22.46 Aligned_cols=21 Identities=29% Similarity=0.185 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEW 89 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~ 89 (157)
+..|++|++.|+.++..++..
T Consensus 139 V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 149
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=25.60 E-value=57 Score=25.93 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.0
Q ss_pred CceeeEEEEeCCCCceeccC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~ 36 (157)
|.+|-+||++..|+.|+-|.
T Consensus 43 d~~vr~vvl~g~g~~F~aG~ 62 (257)
T PRK07658 43 DDNVRVVVIHGEGRFFSAGA 62 (257)
T ss_pred CCCceEEEEECCCCceEeCc
Confidence 77899999999999887764
No 150
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=25.46 E-value=2.1e+02 Score=18.98 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHH---H--HHHHHHHHHHHHhhcCCCCCCCCccc
Q 042472 112 DELNHQELLQMGATIDD---L--HKTFLSKLNEKTANASSSMAPPMCFR 155 (157)
Q Consensus 112 e~L~~~EL~~le~~Le~---l--~~~v~~r~~~l~~~ass~~~~~~~~~ 155 (157)
++|+..+-..|+.-|.. - .-........++..+.+...||..+|
T Consensus 22 geL~~~e~~~~e~HL~~C~~C~~e~~~~~~~~~~L~~~~~~~~aP~~Lr 70 (84)
T TIGR02949 22 GEMGPSDREQLRRHLEACPECLEEYGLEQAVKKLLKRCCKTEAAPEGLR 70 (84)
T ss_pred CCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Confidence 45677777777777664 1 11233444455555555677787665
No 151
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.44 E-value=2.1e+02 Score=18.95 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 042472 67 VRINELNQRHNELLCQLNEEKEW 89 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~ 89 (157)
..|++||..+.+.+..++..+.+
T Consensus 22 ~tieeLn~~laEq~~~i~k~q~q 44 (72)
T COG2900 22 QTIEELNDALAEQQLVIDKLQAQ 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444434333333
No 152
>PHA03011 hypothetical protein; Provisional
Probab=25.23 E-value=2.6e+02 Score=19.91 Aligned_cols=52 Identities=25% Similarity=0.249 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFL 134 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~ 134 (157)
-+++|..+|++|.++-.......+.+...+.. +.++..-|..++++++.+|.
T Consensus 65 ~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQd---------------n~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 65 ILDELIAQYNELLDEYNLIENEIKDLEIIIQD---------------NDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------chHHHHHHHHHHHHHHHHHh
Confidence 36777888888877766555555555555442 56788888888888887764
No 153
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=25.12 E-value=67 Score=26.81 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=19.6
Q ss_pred EEeCCCCceeccCCCHHHHHHHhhcCC
Q 042472 24 EHHRSGRPFSFGHPSIEAAANRFVGLN 50 (157)
Q Consensus 24 VFSp~GK~fsFg~PSv~~Vi~Ryl~~~ 50 (157)
|+| .|+--.||||. .+|++||....
T Consensus 236 liS-~G~~N~yghPh-~~Vl~rl~~~~ 260 (293)
T COG2333 236 LIS-SGRNNRYGHPH-QEVLERLQKRG 260 (293)
T ss_pred EEE-eeccCCCCCCc-HHHHHHHHhcC
Confidence 344 48888999997 56999998864
No 154
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=25.03 E-value=1.8e+02 Score=20.31 Aligned_cols=29 Identities=7% Similarity=0.184 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 114 LNHQELLQMGATIDDLHKTFLSKLNEKTA 142 (157)
Q Consensus 114 L~~~EL~~le~~Le~l~~~v~~r~~~l~~ 142 (157)
|+-++|..|+..|...+..+..++.+...
T Consensus 1 M~~~~l~~~k~~L~~~~~~L~~~i~~~~~ 29 (110)
T TIGR02420 1 MSEAQLEHFRKILLRWKQELLEEADKTLE 29 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888777777666543
No 155
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=25.00 E-value=2.3e+02 Score=19.35 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=11.8
Q ss_pred CCCCCCCHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATI 126 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~L 126 (157)
....+|+-+|...|-..+
T Consensus 58 ~e~~~lT~~E~~~ll~~~ 75 (86)
T PF12958_consen 58 PEPKDLTNDEFYELLEFL 75 (86)
T ss_pred hcchhcCHHHHHHHHHHH
Confidence 446677777777765554
No 156
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=24.94 E-value=2.9e+02 Score=24.50 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=22.6
Q ss_pred eeEEEEeCCCCceeccCCCHHHHHHHhhc
Q 042472 20 QSLLEHHRSGRPFSFGHPSIEAAANRFVG 48 (157)
Q Consensus 20 VAlIVFSp~GK~fsFg~PSv~~Vi~Ryl~ 48 (157)
+-+++|.+.|++-.| ++.++++.|..
T Consensus 301 ~Nm~~~~~~g~p~~~---~l~~iL~~f~~ 326 (445)
T cd00187 301 INMVAFDPNGRPKKL---NLKEILQEFLD 326 (445)
T ss_pred eeEEEEecCCeeEEe---CHHHHHHHHHH
Confidence 378889999999999 78999999976
No 157
>PRK00295 hypothetical protein; Provisional
Probab=24.62 E-value=2e+02 Score=18.46 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042472 118 ELLQMGATIDDLHKTFLSK 136 (157)
Q Consensus 118 EL~~le~~Le~l~~~v~~r 136 (157)
++..|..+|..+..+++..
T Consensus 34 ~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 34 VIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4456666666666665553
No 158
>PRK00394 transcription factor; Reviewed
Probab=24.31 E-value=76 Score=24.43 Aligned_cols=28 Identities=21% Similarity=0.153 Sum_probs=22.4
Q ss_pred CceeeEEEEeCCCCceeccCCCHHHHHHH
Q 042472 17 PKQQSLLEHHRSGRPFSFGHPSIEAAANR 45 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~PSv~~Vi~R 45 (157)
|-.+.++|||+ ||+.--|.-|++++-.-
T Consensus 137 ~pk~~~lIF~S-GKvvitGaks~~~~~~a 164 (179)
T PRK00394 137 DPKVVVLLFGS-GKLVITGAKSEEDAEKA 164 (179)
T ss_pred CCcEEEEEEcC-CEEEEEecCCHHHHHHH
Confidence 77899999987 99998898887655443
No 159
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.27 E-value=2.8e+02 Score=24.21 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHHH
Q 042472 113 ELNHQELLQMGATID 127 (157)
Q Consensus 113 ~L~~~EL~~le~~Le 127 (157)
++=..|+..|++.|.
T Consensus 272 elHq~Ei~~LKqeLa 286 (395)
T PF10267_consen 272 ELHQNEIYNLKQELA 286 (395)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345677777777773
No 160
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=23.82 E-value=62 Score=25.89 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.1
Q ss_pred CceeeEEEEeCCCCceeccC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~ 36 (157)
|.+|-+||++..|+.|+.|.
T Consensus 47 d~~vrvvvl~g~g~~F~aG~ 66 (260)
T PRK07659 47 ESSAHIVVLRGNGRGFSAGG 66 (260)
T ss_pred CCCeeEEEEECCCCCccccc
Confidence 67889999999999988873
No 161
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=23.75 E-value=60 Score=25.94 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=16.2
Q ss_pred CceeeEEEEeCCCCceecc
Q 042472 17 PKQQSLLEHHRSGRPFSFG 35 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg 35 (157)
|.+|-+||++..|+.|+-|
T Consensus 45 d~~vr~vVl~g~g~~FcaG 63 (257)
T PRK06495 45 RPDVRVVVLTGAGKVFCAG 63 (257)
T ss_pred CCCceEEEEECCCCCcccC
Confidence 6789999999999988765
No 162
>PRK03996 proteasome subunit alpha; Provisional
Probab=23.67 E-value=34 Score=27.12 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=12.7
Q ss_pred eeEEEEeCCCCce--eccC
Q 042472 20 QSLLEHHRSGRPF--SFGH 36 (157)
Q Consensus 20 VAlIVFSp~GK~f--sFg~ 36 (157)
-.+-+|||.||+| +|+.
T Consensus 12 ~~~~~fsp~Gr~~Q~eya~ 30 (241)
T PRK03996 12 RAITIFSPDGRLYQVEYAR 30 (241)
T ss_pred CCCceECCCCeEhHHHHHH
Confidence 3456899999999 5543
No 163
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=23.48 E-value=2.5e+02 Score=21.78 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=24.1
Q ss_pred cccCceeeEEEEe----CCCCceec-c-CCCHHHHHHHhhc
Q 042472 14 KIIPKQQSLLEHH----RSGRPFSF-G-HPSIEAAANRFVG 48 (157)
Q Consensus 14 SvldAeVAlIVFS----p~GK~fsF-g-~PSv~~Vi~Ryl~ 48 (157)
+|-|+.|-.+-++ +...+|+| | +|.++..++.|..
T Consensus 97 ni~GV~vP~~~~~~~~~~~~~~y~~~~t~~~~d~a~~~~~~ 137 (204)
T PRK00373 97 NIMGVVVPVIELSVKRTLPERGYGFLGTSAELDEAAEKFEE 137 (204)
T ss_pred EEEEEEeceEEeecccCCccCCcCcccCCHHHHHHHHHHHH
Confidence 3448888888773 34466887 3 3568888888865
No 164
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=23.43 E-value=68 Score=24.15 Aligned_cols=24 Identities=8% Similarity=-0.074 Sum_probs=16.6
Q ss_pred hcccccccccCceeeEEEEeCCCC
Q 042472 7 QQPANQHKIIPKQQSLLEHHRSGR 30 (157)
Q Consensus 7 ~kKA~ELSvldAeVAlIVFSp~GK 30 (157)
|..-..+..-+|++.|||||.+.+
T Consensus 66 ~~~~~~~~~~~ad~~ilvyDit~~ 89 (182)
T cd04172 66 YDNVRPLSYPDSDAVLICFDISRP 89 (182)
T ss_pred hHhhhhhhcCCCCEEEEEEECCCH
Confidence 444344444499999999998654
No 165
>PF03989 DNA_gyraseA_C: DNA gyrase C-terminal domain, beta-propeller; InterPro: IPR006691 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. This entry represents the beta-pinwheel repeat found at the C-terminal end of subunit A of topoisomerase IV (ParC) and subunit A of DNA gyrase (GyrA). DNA gyrase is the topoisomerase II found primarily in bacteria and archaea that consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. This is distinct from the topoisomerase II found in most eukaryotes, which consists of a single polypeptide, with the N- and C-terminal regions corresponding to gyrB and gyrA, respectively, and which is not represented in this entry. The ability of DNA gyrase to introduce negative supercoils into DNA is mediated in part by the C-terminal domain of subunit A, which forms a beta-pinwheel fold that is similar to a beta-propeller but with a different blade topology, and which forms a superhelical spiral domain [, ]. This beta-pinwheel is capable of bending DNA by over 180 degrees over a 40 bp region, possibly by wrapping the DNA around the GyrA C-terminal beta-pinwheel domain. In topoisomerase IV, although the C-terminal domain forms a similar superhelical spiral to that of DNA gyrase A, it assembles as a broken form of a beta-pinwheel as distinct from that of gyrA, due to the absence of a DNA gyrase-specific GyrA box motif []. This difference may account for parC being less efficient than gyrA in mediating DNA-bending, leading to their divergence in terms of activity, where topoisomerase IV acts to relax positive supercoils, and DNA gyrase acts to introduce negative supercoils []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3L6V_A 3UC1_A 1ZI0_B 1SUU_A 1ZVU_A 1ZVT_B 3NO0_B.
Probab=23.13 E-value=52 Score=18.99 Aligned_cols=15 Identities=13% Similarity=-0.015 Sum_probs=12.6
Q ss_pred EEEEeCCCCceeccC
Q 042472 22 LLEHHRSGRPFSFGH 36 (157)
Q Consensus 22 lIVFSp~GK~fsFg~ 36 (157)
|++||..|+.+-|--
T Consensus 3 il~~T~~G~~~r~~~ 17 (48)
T PF03989_consen 3 ILLITSNGYVKRIPL 17 (48)
T ss_dssp EEEEETTSEEEEEEG
T ss_pred EEEEeCCCeEEEeee
Confidence 789999999987754
No 166
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.09 E-value=41 Score=25.43 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=17.5
Q ss_pred cccccccc-Cce-------eeEEEEeCCCCcee
Q 042472 9 PANQHKII-PKQ-------QSLLEHHRSGRPFS 33 (157)
Q Consensus 9 KA~ELSvl-dAe-------VAlIVFSp~GK~fs 33 (157)
++.+|-|. |.- -++.|++|+|++|+
T Consensus 65 ~~gDlVVT~Di~LA~~ll~kg~~v~~prGr~y~ 97 (150)
T COG1671 65 EKGDLVVTADIPLASLLLDKGAAVLNPRGRLYT 97 (150)
T ss_pred CCCCEEEECchHHHHHHHhcCCEEECCCCcccC
Confidence 45555555 543 35789999999997
No 167
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=22.95 E-value=4.3e+02 Score=23.27 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHH-------HHHHHHHHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQ-------MGATIDDLHKTFLSK 136 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~-------le~~Le~l~~~v~~r 136 (157)
++++++.++.....||..-+.+.+...+.. +.|.++++-.-|.. ++.+|..+++.+..+
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~----------e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~ 68 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQY----------EKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADR 68 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888776665544333332 34556665554444 444444444444443
No 168
>PRK11539 ComEC family competence protein; Provisional
Probab=22.86 E-value=81 Score=29.58 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=22.1
Q ss_pred CceeeEEEEeCCCCceeccCCCHHHHHHHhhcCC
Q 042472 17 PKQQSLLEHHRSGRPFSFGHPSIEAAANRFVGLN 50 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ryl~~~ 50 (157)
+.++||| | .|+--.||||+. +|++||....
T Consensus 681 ~P~~aii--S-~g~~NryghP~~-~v~~rl~~~g 710 (755)
T PRK11539 681 NGKVALA--S-ASRYNAWRLPSV-KVKQRYQQQG 710 (755)
T ss_pred CCCEEEE--e-CCCCCCCCCCCH-HHHHHHHHcC
Confidence 4445544 4 488889999985 6999998754
No 169
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=22.57 E-value=42 Score=13.78 Aligned_cols=7 Identities=57% Similarity=0.966 Sum_probs=5.1
Q ss_pred CCCCccc
Q 042472 149 APPMCFR 155 (157)
Q Consensus 149 ~~~~~~~ 155 (157)
+|.++|.
T Consensus 1 apsmgf~ 7 (10)
T PF08262_consen 1 APSMGFH 7 (10)
T ss_pred CCccccc
Confidence 5788884
No 170
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=22.43 E-value=4.7e+02 Score=22.00 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCH
Q 042472 73 NQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNH 116 (157)
Q Consensus 73 ~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~ 116 (157)
+..+..|++++.++++..-.+++.+. .+||.|-..=.+
T Consensus 151 K~~I~~L~~qisaLdkqi~ai~Kkid------~yWgkda~gk~~ 188 (308)
T PF06717_consen 151 KNKIPGLNKQISALDKQIVAINKKID------RYWGKDANGKQL 188 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH------hccCCCCCCCcc
Confidence 33344455555555555555555555 578766655433
No 171
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=22.32 E-value=2.6e+02 Score=22.44 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCC---HHHHHHHHHHHHHHHHH
Q 042472 74 QRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELN---HQELLQMGATIDDLHKT 132 (157)
Q Consensus 74 ~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~---~~EL~~le~~Le~l~~~ 132 (157)
..+.+....++.+....+.++... +. .||-.|-..++ ..+|..++..|+.+...
T Consensus 43 ~~L~e~~~~L~~E~~ed~~~r~~~---g~--~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~s 99 (296)
T PF13949_consen 43 SILDEIEEMLDEEEREDEQLRAKY---GE--RWTRPPSSELNASLRKELQKYREYLEQASES 99 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS---TT--TCGSS-HHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cC--CCcCCCcHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555665655554454433 22 68888777665 56788888888765543
No 172
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=22.32 E-value=77 Score=25.88 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=20.2
Q ss_pred ccc-CceeeEEEEeCCCCceeccCCCHHHHHHHhhc
Q 042472 14 KII-PKQQSLLEHHRSGRPFSFGHPSIEAAANRFVG 48 (157)
Q Consensus 14 Svl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ryl~ 48 (157)
.|. +++++|||+|.....|+|. .++||+.
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~------~ldr~L~ 103 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPR------LLDRYLV 103 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHH------HHHHHHH
Confidence 356 9999999999976554332 4566653
No 173
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.20 E-value=68 Score=28.82 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMV 93 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L 93 (157)
+|++|.+|+++|+++++.++++.+++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchh
Confidence 45555555555555555444444333
No 174
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed
Probab=22.18 E-value=52 Score=26.86 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.8
Q ss_pred eeEEEEeCCCCcee
Q 042472 20 QSLLEHHRSGRPFS 33 (157)
Q Consensus 20 VAlIVFSp~GK~fs 33 (157)
--||.+||.||.|.
T Consensus 82 ~~vi~lsP~G~~f~ 95 (244)
T PRK00026 82 AKVILLSPQGKPFT 95 (244)
T ss_pred CeEEEECCCCCcCC
Confidence 45999999999885
No 175
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=22.14 E-value=4.5e+02 Score=25.30 Aligned_cols=84 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCC--------CCHHHHHHHHHHHHHHHHH
Q 042472 61 VEVHRQVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDE--------LNHQELLQMGATIDDLHKT 132 (157)
Q Consensus 61 ~e~~~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~--------L~~~EL~~le~~Le~l~~~ 132 (157)
.+.++...++....++......+.++|.--..| +...-|+.. ....||..++++|++.-..
T Consensus 280 t~~~r~~vL~~~~~~l~~W~~~v~K~KaIyhtL-----------N~fn~Dvt~KCLIaE~W~P~~dl~~vq~aL~~~~~~ 348 (829)
T KOG2189|consen 280 TEDHRSRVLQAAAKNLPSWLIKVRKEKAIYHTL-----------NMFNFDVTQKCLIAEGWCPVADLPDLQRALERGSEE 348 (829)
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----------hccCccccCceEEEEeecchhhHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHhhcCCCCCCCCccc
Q 042472 133 FLSKLNEKTANASSSMAPPMCFR 155 (157)
Q Consensus 133 v~~r~~~l~~~ass~~~~~~~~~ 155 (157)
......-++--=-+.-+||-.||
T Consensus 349 sgS~v~~i~nv~~T~e~PPTy~R 371 (829)
T KOG2189|consen 349 SGSQVPSILNVMETNEMPPTYFR 371 (829)
T ss_pred cCCcchhhHhheecCCCCCcchh
No 176
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=22.02 E-value=73 Score=25.60 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.8
Q ss_pred CceeeEEEEeCCCCceecc
Q 042472 17 PKQQSLLEHHRSGRPFSFG 35 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg 35 (157)
|.+|-+||++.+|+.|+-|
T Consensus 48 d~~vr~vVl~g~g~~FcaG 66 (272)
T PRK06210 48 DPAVRVIVLTGAGRGFCAG 66 (272)
T ss_pred CCCeeEEEEECCCCCcccc
Confidence 6789999999999987655
No 177
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.98 E-value=5.3e+02 Score=22.43 Aligned_cols=26 Identities=31% Similarity=0.229 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 72 LNQRHNELLCQLNEEKEWETMVKQMR 97 (157)
Q Consensus 72 l~~e~~~l~~el~~ek~~~e~L~~~~ 97 (157)
+..++..+..++...+++.+.++..+
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l 357 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNL 357 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 178
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=21.96 E-value=88 Score=26.60 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHH
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQE 118 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~E 118 (157)
++++|..++.++..+|+..+++..-.++..+ |+..=+++.++++
T Consensus 183 k~~~l~~~l~~~~~eL~~~~k~L~faqekn~-------LlqslLddaniD~ 226 (323)
T PF08537_consen 183 KIDELEERLNDLEKELEITKKDLKFAQEKNA-------LLQSLLDDANIDS 226 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhcccH
Confidence 4566777777777777776666665555543 5555555555554
No 179
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=21.91 E-value=2.8e+02 Score=19.21 Aligned_cols=60 Identities=10% Similarity=0.242 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 70 NELNQRHNELLCQLNEEKEW-ETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNE 139 (157)
Q Consensus 70 ~~l~~e~~~l~~el~~ek~~-~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~ 139 (157)
..+..+++.|+.++.....+ .+++...- ....+.+|.++| .+|...++.+..+.|.....
T Consensus 5 s~I~~eIekLqe~lk~~e~keaERigr~A---------lKaGL~eieI~d-~eL~~~FeeIa~RFrk~~~~ 65 (92)
T PF07820_consen 5 SKIREEIEKLQEQLKQAETKEAERIGRIA---------LKAGLGEIEISD-AELQAAFEEIAARFRKGKKK 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHcccccccCCH-HHHHHHHHHHHHHHhccccc
Confidence 35677788888877655433 34443332 124455565544 24555677777666655433
No 180
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.91 E-value=4.4e+02 Score=21.41 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTF 133 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v 133 (157)
++.+..++.++..++...+++.+..+..+... -+..++..|...+..++++.
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v-------------~~~~e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKLSAV-------------KDERELRALNIEIQIAKERI 105 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------ccHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555556655555554211 24555555555555555443
No 181
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=21.90 E-value=68 Score=25.68 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=16.6
Q ss_pred CceeeEEEEeCCCCceeccC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~ 36 (157)
|.+|-+||++..|+.|+-|.
T Consensus 47 d~~vr~vVltg~g~~F~aG~ 66 (263)
T PRK07799 47 DPDIRSCILTGAGGAFCAGM 66 (263)
T ss_pred CCCceEEEEECCCCcccccc
Confidence 77899999999999887664
No 182
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=21.88 E-value=67 Score=26.44 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=24.8
Q ss_pred hhcccccc-ccc-Cce-eeEEEEeCCCCceeccCCC
Q 042472 6 QQQPANQH-KII-PKQ-QSLLEHHRSGRPFSFGHPS 38 (157)
Q Consensus 6 ~~kKA~EL-Svl-dAe-VAlIVFSp~GK~fsFg~PS 38 (157)
.-||-.|- -|| |.+ |--|-|-|+|++|.-|+.|
T Consensus 18 ~~k~~f~~i~~l~dsqairav~fhp~g~lyavgsns 53 (350)
T KOG0641|consen 18 KEKKHFEAINILEDSQAIRAVAFHPAGGLYAVGSNS 53 (350)
T ss_pred ccccceEEEEEecchhheeeEEecCCCceEEeccCC
Confidence 44666663 567 654 5678999999999999876
No 183
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.71 E-value=5.2e+02 Score=22.19 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSK 136 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r 136 (157)
-..+|.+++.+..+....+.+...+++..+.... .|.. --.+|.++-..|+.++..+..|
T Consensus 261 Ek~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~-------~V~~-~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 261 EKYINNQLEPLIQEYRSAQDELSEVQEKYKQASE-------GVSE-RTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-------HHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555544444444444444444432211 1111 1234445555566555555554
No 184
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=21.67 E-value=31 Score=26.65 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=9.2
Q ss_pred EEEeCCCCcee
Q 042472 23 LEHHRSGRPFS 33 (157)
Q Consensus 23 IVFSp~GK~fs 33 (157)
=+|||.||+|.
T Consensus 6 ~~f~~~G~~~q 16 (209)
T cd01911 6 TTFSPEGRLFQ 16 (209)
T ss_pred ccCCCCCEEeH
Confidence 36999999993
No 185
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=21.64 E-value=1.2e+02 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.4
Q ss_pred CceeeEEEEeCCCCceeccCCCHHHH
Q 042472 17 PKQQSLLEHHRSGRPFSFGHPSIEAA 42 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~PSv~~V 42 (157)
+-.+|++||.+ ||+-.=|.-|++++
T Consensus 51 ePk~a~LIF~S-GK~VcTGaKs~ed~ 75 (185)
T COG2101 51 EPKTAALIFRS-GKVVCTGAKSVEDV 75 (185)
T ss_pred CCcceEEEEec-CcEEEeccCcHHHH
Confidence 66789999987 99999998776543
No 186
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional
Probab=21.60 E-value=54 Score=26.38 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=11.3
Q ss_pred eEEEEeCCCCcee
Q 042472 21 SLLEHHRSGRPFS 33 (157)
Q Consensus 21 AlIVFSp~GK~fs 33 (157)
-||.+||.||+|.
T Consensus 80 ~vi~lsP~G~~f~ 92 (222)
T PRK14599 80 IVILTSPSGIPFN 92 (222)
T ss_pred cEEEECCCCCccC
Confidence 3899999999985
No 187
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=21.58 E-value=73 Score=25.37 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=16.7
Q ss_pred CceeeEEEEeCCCCceeccC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~ 36 (157)
|.+|-+||++.+|+.|+-|.
T Consensus 41 d~~vrvvvl~g~g~~F~aG~ 60 (255)
T PRK06563 41 DDELRVAVLFAHGEHFTAGL 60 (255)
T ss_pred CCCcEEEEEECCCCCCcCCc
Confidence 77888999999999887764
No 188
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=21.40 E-value=74 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.6
Q ss_pred CceeeEEEEeCCCCceeccC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~ 36 (157)
|-+|.+||++..||.|+-|.
T Consensus 44 d~~v~~vVl~g~g~~F~aG~ 63 (255)
T PRK07260 44 DPSVRFLLINANGKVFSVGG 63 (255)
T ss_pred CCCceEEEEECCCCCccccc
Confidence 77888999999999887763
No 189
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.40 E-value=5.7e+02 Score=24.28 Aligned_cols=7 Identities=0% Similarity=-0.059 Sum_probs=2.9
Q ss_pred eEEEEeC
Q 042472 21 SLLEHHR 27 (157)
Q Consensus 21 AlIVFSp 27 (157)
+=+-|..
T Consensus 460 ~~~~~d~ 466 (771)
T TIGR01069 460 ASVLFDE 466 (771)
T ss_pred eEEEEcC
Confidence 3344443
No 190
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.96 E-value=3.8e+02 Score=22.51 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKT 132 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~ 132 (157)
+.+++.++..+...++..+++...+...+..... --......+..|+..|+..+..+.+-
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~----~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEK----KLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444432211 00222345777888777777766543
No 191
>PHA02047 phage lambda Rz1-like protein
Probab=20.94 E-value=3.1e+02 Score=19.28 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCcccCCCCC
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQMRTGK-ESQPCWWETPVDE 113 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~-~~~~~w~~~~ve~ 113 (157)
...++.++.++..++++++.++.+.+.-.+.++.. +....|=+.||-.
T Consensus 40 a~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD~PVPp 88 (101)
T PHA02047 40 TARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWADRPVPP 88 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCh
Confidence 34467777788888888877765544333333221 1112577777744
No 192
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=57 Score=25.99 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=11.4
Q ss_pred eeEEEEeCCCCcee
Q 042472 20 QSLLEHHRSGRPFS 33 (157)
Q Consensus 20 VAlIVFSp~GK~fs 33 (157)
-.|-.|||+||+-.
T Consensus 8 fslTtFSpsGKL~Q 21 (233)
T KOG0181|consen 8 FSLTTFSPSGKLVQ 21 (233)
T ss_pred eeeEEEcCCCceeh
Confidence 45778999999974
No 193
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=8e+02 Score=24.07 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMR 97 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~ 97 (157)
|.++-.++.++..+++..+++...+...+
T Consensus 183 iNq~l~klkq~~~ei~e~eke~a~yh~lL 211 (984)
T COG4717 183 INQLLEKLKQERNEIDEAEKEYATYHKLL 211 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555655555555444433
No 194
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=20.86 E-value=3.5e+02 Score=19.88 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=19.2
Q ss_pred eeEEEEeCCCCceeccCCCHHHHHHHh
Q 042472 20 QSLLEHHRSGRPFSFGHPSIEAAANRF 46 (157)
Q Consensus 20 VAlIVFSp~GK~fsFg~PSv~~Vi~Ry 46 (157)
.+||++-| =+|-|.+|+-+.++.||
T Consensus 16 ~~ii~~G~--~l~~y~tPTeEeL~~r~ 40 (128)
T PF07960_consen 16 AVIIGGGP--ALVKYTTPTEEELFKRY 40 (128)
T ss_pred ceeEeech--HHheecCCCHHHHHHhc
Confidence 35555544 46788999999999999
No 195
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.68 E-value=3.7e+02 Score=20.12 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQMR 97 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~~ 97 (157)
.+.+++.++.++.++++.++++...+....
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESEL 111 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777666666655444433
No 196
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=20.67 E-value=2.9e+02 Score=22.38 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMR 97 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~ 97 (157)
...+..+++.|.++...+..+...|+..+
T Consensus 224 ~~~~~~~l~~l~~E~~~I~~re~elq~~l 252 (254)
T PF15458_consen 224 KSQLQQQLESLEKEKEEIEEREKELQELL 252 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555555544
No 197
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=20.65 E-value=2.4e+02 Score=17.94 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=11.2
Q ss_pred EEeCCCCceeccCCCHHHHHHHhhcC
Q 042472 24 EHHRSGRPFSFGHPSIEAAANRFVGL 49 (157)
Q Consensus 24 VFSp~GK~fsFg~PSv~~Vi~Ryl~~ 49 (157)
|.+|+|+.|+ .. .|++++..
T Consensus 18 Vi~~~G~tye--r~----~I~~~l~~ 37 (73)
T PF04564_consen 18 VILPSGHTYE--RS----AIERWLEQ 37 (73)
T ss_dssp EEETTSEEEE--HH----HHHHHHCT
T ss_pred eeCCcCCEEc--HH----HHHHHHHc
Confidence 3468895554 33 45556554
No 198
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=20.56 E-value=74 Score=19.98 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=11.4
Q ss_pred EEEeCCCCceeccCC
Q 042472 23 LEHHRSGRPFSFGHP 37 (157)
Q Consensus 23 IVFSp~GK~fsFg~P 37 (157)
||+||.|+.+.|-.+
T Consensus 26 ivl~~~~~~v~yi~~ 40 (68)
T PF00659_consen 26 IVLSPDGRLVTYIDR 40 (68)
T ss_dssp EEEETTCCEEEEE-T
T ss_pred EEECCCCCEEEEECC
Confidence 677899998888765
No 199
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=20.52 E-value=1.4e+02 Score=19.07 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=15.2
Q ss_pred eEEEEeCCCCceec-cCCCHHHHH
Q 042472 21 SLLEHHRSGRPFSF-GHPSIEAAA 43 (157)
Q Consensus 21 AlIVFSp~GK~fsF-g~PSv~~Vi 43 (157)
.+++|.+++.++.| |..+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~g~~~~~~l~ 95 (102)
T TIGR01126 72 TIKFFPKGKKPVDYEGGRDLEAIV 95 (102)
T ss_pred EEEEecCCCcceeecCCCCHHHHH
Confidence 47788887777777 555655543
No 200
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase. S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine.
Probab=20.51 E-value=59 Score=26.37 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=11.3
Q ss_pred eEEEEeCCCCcee
Q 042472 21 SLLEHHRSGRPFS 33 (157)
Q Consensus 21 AlIVFSp~GK~fs 33 (157)
-||.+||.||+|.
T Consensus 80 ~vi~lsP~G~~f~ 92 (233)
T TIGR00088 80 TVILLSPQGRKFD 92 (233)
T ss_pred cEEEECCCCCcCC
Confidence 3899999999985
No 201
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=20.42 E-value=87 Score=24.96 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.0
Q ss_pred CceeeEEEEeCCCCceeccC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~ 36 (157)
|.+|-+||+...|+.|+-|.
T Consensus 46 d~~vr~vvl~g~g~~F~aG~ 65 (257)
T PRK05862 46 DEGIGAIVITGSEKAFAAGA 65 (257)
T ss_pred CCCeeEEEEECCCCceECCc
Confidence 77899999999999888764
No 202
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=20.40 E-value=1.3e+02 Score=21.21 Aligned_cols=36 Identities=17% Similarity=0.442 Sum_probs=27.2
Q ss_pred CcccCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 105 CWWETPVD---ELNHQELLQMGATIDDLHKTFLSKLNEK 140 (157)
Q Consensus 105 ~w~~~~ve---~L~~~EL~~le~~Le~l~~~v~~r~~~l 140 (157)
.||...+- +|--+|-.++++.|+...++|..+..++
T Consensus 63 rwwtvalcdefdmikee~~emkkdleaankrve~q~eki 101 (122)
T PF05325_consen 63 RWWTVALCDEFDMIKEETIEMKKDLEAANKRVESQAEKI 101 (122)
T ss_pred eEEeeeechhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 58875552 4556788888888998888888887764
No 203
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=20.37 E-value=83 Score=25.32 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.8
Q ss_pred CceeeEEEEeCCCCceeccC
Q 042472 17 PKQQSLLEHHRSGRPFSFGH 36 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~ 36 (157)
|.+|-+||++..|+.|+-|.
T Consensus 48 d~~vr~vVl~g~g~~F~aG~ 67 (265)
T PRK05674 48 DASLRFLLLRGRGRHFSAGA 67 (265)
T ss_pred CCCeeEEEEECCCCCcccCc
Confidence 78899999999999886663
No 204
>PF10654 DUF2481: Protein of unknown function (DUF2481) ; InterPro: IPR018916 This entry is represented by Bacteriophage A500, Gp59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.37 E-value=2.5e+02 Score=20.45 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWE---TMVKQMRTGKESQPCWWETPVDELNHQELLQMGAT 125 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~---e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~ 125 (157)
...|+.+++.|.++-..++.+. ...+..++. .+-+++++-|+..|..+
T Consensus 29 ~k~LqkeLn~Lm~~nTEeK~kt~~~kt~~r~v~~---------K~we~iti~Efi~LR~A 79 (126)
T PF10654_consen 29 RKELQKELNQLMNENTEEKMKTYWTKTFDRIVGN---------KNWEEITIREFIELRHA 79 (126)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc---------ccHhHhhHHHHHHHHhc
Confidence 5678999999988877776553 233333331 33467888888877654
No 205
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.25 E-value=2.9e+02 Score=18.74 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
.+-.+..++..++.+++.++.+...+...+.
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~ 60 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIG 60 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3666777888888888888777666665554
No 206
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.11 E-value=4.9e+02 Score=26.91 Aligned_cols=22 Identities=5% Similarity=-0.020 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDDLH 130 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~l~ 130 (157)
..+.+|+.++|+.+-..++.-.
T Consensus 430 ~~~~~~SdEeLe~~LenF~akl 451 (1486)
T PRK04863 430 CGLPDLTADNAEDWLEEFQAKE 451 (1486)
T ss_pred hCCCCCCHHHHHHHHHHHHHHH
Confidence 4566788888775554444333
No 207
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=20.05 E-value=3.4e+02 Score=20.45 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHH
Q 042472 86 EKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQM 122 (157)
Q Consensus 86 ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~l 122 (157)
-+++...|+..+..-+.. .|+++|+++|+-..
T Consensus 108 s~~~i~~l~keL~~i~~~-----~P~e~mT~dd~~~a 139 (161)
T PF05873_consen 108 SKKRIAELEKELANIESA-----RPFEQMTVDDYAAA 139 (161)
T ss_dssp HHHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHHHHHHHHcC-----CChHhCCHHHHHHh
Confidence 344555555555422221 68899999987654
Done!