Query 042472
Match_columns 157
No_of_seqs 116 out of 1337
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 99.8 1.3E-20 4.5E-25 126.0 2.1 48 5-52 26-74 (77)
2 3p57_A Myocyte-specific enhanc 99.8 4E-20 1.4E-24 126.8 2.5 48 5-52 26-74 (90)
3 1mnm_A Protein (MCM1 transcrip 99.7 1.3E-18 4.4E-23 121.3 1.1 44 5-48 42-86 (100)
4 1hbx_A SRF, serum response fac 99.7 3.1E-18 1.1E-22 117.9 -0.7 43 5-47 36-79 (92)
5 1k6o_B SRF, serum response fac 99.6 7.9E-18 2.7E-22 118.0 -0.7 42 5-46 35-77 (103)
6 2yy0_A C-MYC-binding protein; 81.5 2.6 8.8E-05 25.3 4.3 31 68-98 20-50 (53)
7 1s94_A S-syntaxin; three helix 67.6 32 0.0011 24.9 8.9 70 67-141 36-105 (180)
8 3efg_A Protein SLYX homolog; x 60.8 14 0.00049 23.7 4.4 33 65-97 26-58 (78)
9 3twe_A Alpha4H; unknown functi 58.2 16 0.00056 18.3 3.9 20 69-88 3-22 (27)
10 2w6b_A RHO guanine nucleotide 54.6 33 0.0011 20.7 5.2 31 68-98 18-48 (56)
11 3efg_A Protein SLYX homolog; x 54.2 39 0.0013 21.6 5.7 53 72-139 12-64 (78)
12 1t6f_A Geminin; coiled-coil, c 52.8 27 0.00092 19.2 4.0 26 70-95 10-35 (37)
13 2k48_A Nucleoprotein; viral pr 51.2 55 0.0019 22.3 7.6 63 66-138 34-96 (107)
14 2ke4_A CDC42-interacting prote 50.0 54 0.0019 21.8 7.0 66 66-134 14-79 (98)
15 1g6u_A Domain swapped dimer; d 49.7 33 0.0011 19.3 5.0 28 113-140 16-43 (48)
16 3tnu_B Keratin, type II cytosk 49.4 40 0.0014 23.2 5.6 34 66-99 35-68 (129)
17 2hv8_D RAB11 family-interactin 46.1 50 0.0017 20.5 5.0 36 107-142 16-51 (64)
18 1p9i_A Cortexillin I/GCN4 hybr 45.8 31 0.001 17.8 3.5 27 116-142 1-27 (31)
19 3h4p_A Proteasome subunit alph 43.6 3.7 0.00013 32.1 -0.7 16 18-33 12-27 (264)
20 3m91_A Proteasome-associated A 42.5 51 0.0017 19.4 6.0 23 76-98 11-33 (51)
21 2vlg_A Sporulation kinase A; h 42.5 18 0.0006 23.8 2.7 29 15-44 4-33 (111)
22 1ryp_E 20S proteasome; multica 41.5 5.5 0.00019 30.4 0.0 13 21-33 3-15 (242)
23 1j1e_C Troponin I, TNI; THIN f 41.4 1.1E+02 0.0037 22.8 7.1 30 109-138 53-82 (180)
24 3tnu_A Keratin, type I cytoske 40.0 42 0.0014 23.3 4.5 32 67-98 38-69 (131)
25 4dnd_A Syntaxin-10, SYN10; str 39.8 93 0.0032 21.7 7.9 64 72-140 65-128 (130)
26 1a93_B MAX protein, coiled coi 38.7 48 0.0016 18.0 4.3 27 72-98 5-31 (34)
27 3nzj_F Proteasome component C1 38.3 3.8 0.00013 32.7 -1.4 17 17-33 7-23 (288)
28 3mwp_A Nucleoprotein; structur 38.2 47 0.0016 28.5 5.1 28 109-136 97-124 (577)
29 1ryp_D 20S proteasome; multica 37.7 4.5 0.00015 30.9 -1.1 14 20-33 4-17 (241)
30 1m2d_A [2Fe-2S] ferredoxin; th 37.5 28 0.00096 23.1 3.2 23 27-49 69-92 (110)
31 1iru_B 20S proteasome; cell cy 37.3 5 0.00017 30.4 -0.8 14 19-32 6-19 (233)
32 3sl9_C B-cell CLL/lymphoma 9 p 37.0 63 0.0022 18.9 4.2 27 108-134 4-30 (55)
33 1ryp_B 20S proteasome; multica 36.9 4.9 0.00017 30.9 -1.0 14 19-32 6-19 (250)
34 1ryp_C 20S proteasome; multica 35.7 7.8 0.00027 29.6 0.0 13 21-33 8-20 (244)
35 1iru_D 20S proteasome; cell cy 35.5 5.4 0.00019 30.7 -0.9 13 21-33 6-18 (248)
36 1iru_E 20S proteasome; cell cy 35.5 7.9 0.00027 29.5 0.0 13 20-32 10-22 (241)
37 1ryp_A 20S proteasome; multica 35.4 6.9 0.00024 29.9 -0.3 13 21-33 6-18 (243)
38 1iru_G 20S proteasome; cell cy 35.4 7.6 0.00026 30.0 -0.1 15 18-32 7-21 (254)
39 1ryp_F 20S proteasome; multica 35.1 7.7 0.00026 29.4 -0.1 13 21-33 8-20 (233)
40 1nkp_B MAX protein, MYC proto- 35.1 84 0.0029 19.7 5.4 30 69-98 49-78 (83)
41 1yar_A Proteasome alpha subuni 34.7 6.9 0.00024 29.6 -0.4 15 19-33 9-23 (233)
42 1j2p_A Alpha-ring, proteasome 34.5 8 0.00027 29.6 -0.1 13 20-32 10-22 (246)
43 1j1d_C Troponin I, TNI; THIN f 34.4 1.2E+02 0.0041 21.4 8.2 31 109-139 53-83 (133)
44 2pnv_A Small conductance calci 34.2 66 0.0023 18.3 4.9 30 69-98 11-40 (43)
45 1ryp_G 20S proteasome; multica 34.0 8.3 0.00028 29.6 -0.1 12 21-32 7-18 (244)
46 2oqq_A Transcription factor HY 33.3 68 0.0023 18.1 5.2 33 66-98 9-41 (42)
47 1iru_C 20S proteasome; cell cy 32.9 8.9 0.0003 29.7 -0.1 14 20-33 7-20 (261)
48 2ic6_A Nucleocapsid protein; h 32.7 99 0.0034 19.8 7.4 61 67-137 5-65 (78)
49 2eo6_A B-cell linker protein; 32.6 54 0.0019 22.7 4.1 41 10-50 61-112 (141)
50 3fx7_A Putative uncharacterize 32.6 79 0.0027 21.0 4.6 28 114-141 6-33 (94)
51 4fi5_A Nucleoprotein; structur 32.5 1.2E+02 0.0041 20.8 7.1 60 67-136 22-81 (113)
52 2l5g_B Putative uncharacterize 31.9 73 0.0025 18.0 4.9 29 68-96 10-38 (42)
53 4dzo_A Mitotic spindle assembl 31.2 62 0.0021 22.4 4.1 25 74-98 4-28 (123)
54 2ic9_A Nucleocapsid protein; h 30.5 1.2E+02 0.0042 20.2 7.4 57 67-133 5-61 (96)
55 2dfs_A Myosin-5A; myosin-V, in 30.1 2.2E+02 0.0074 26.8 8.7 14 125-138 1027-1040(1080)
56 1deb_A APC protein, adenomatou 29.9 89 0.003 18.4 6.5 23 76-98 5-27 (54)
57 2bsj_A Chaperone protein SYCT; 29.1 36 0.0012 23.6 2.5 46 106-154 87-132 (133)
58 1iru_F 20S proteasome; cell cy 28.8 11 0.00039 29.2 -0.1 13 21-33 9-21 (263)
59 1iru_A 20S proteasome; cell cy 28.6 12 0.0004 28.6 -0.1 13 20-32 11-23 (246)
60 2w83_C C-JUN-amino-terminal ki 28.4 1.2E+02 0.004 19.4 4.7 33 66-98 36-68 (77)
61 2lw1_A ABC transporter ATP-bin 28.1 1.2E+02 0.0041 19.3 8.6 56 72-136 20-75 (89)
62 3hvz_A Uncharacterized protein 28.1 53 0.0018 20.8 3.1 25 21-45 7-32 (78)
63 1deq_A Fibrinogen (alpha chain 28.0 2.1E+02 0.007 23.9 7.3 25 115-139 111-135 (390)
64 2w0n_A Sensor protein DCUS; si 27.4 16 0.00054 22.3 0.4 30 14-44 19-49 (118)
65 1ez3_A Syntaxin-1A; three heli 26.8 1.4E+02 0.0048 19.7 6.9 66 71-141 9-74 (127)
66 1j1d_B Troponin T, TNT; THIN f 26.7 72 0.0025 21.6 3.7 30 110-139 38-67 (106)
67 3f1p_B ARYL hydrocarbon recept 26.1 54 0.0019 20.3 3.0 27 17-44 10-36 (121)
68 1ybx_A Conserved hypothetical 25.7 86 0.003 22.4 4.1 86 68-154 42-143 (143)
69 4etp_A Kinesin-like protein KA 25.6 75 0.0026 26.3 4.4 54 66-134 9-62 (403)
70 3f1p_A Endothelial PAS domain- 25.6 44 0.0015 20.6 2.4 28 16-44 6-33 (117)
71 1uii_A Geminin; human, DNA rep 24.4 1.5E+02 0.0051 19.2 4.8 26 71-96 50-75 (83)
72 2eob_A 1-phosphatidylinositol- 24.2 1E+02 0.0035 20.7 4.2 41 10-50 54-99 (124)
73 2l5l_A Thioredoxin; structural 23.9 1.5E+02 0.0053 19.3 5.1 31 21-51 95-129 (136)
74 2wuj_A Septum site-determining 23.7 88 0.003 18.5 3.3 23 71-93 31-53 (57)
75 1hjb_A Ccaat/enhancer binding 23.7 1.6E+02 0.0053 19.2 5.0 29 69-97 45-73 (87)
76 3jrn_A AT1G72930 protein; TIR 23.0 40 0.0014 24.8 2.0 27 16-47 61-92 (176)
77 2ab9_A Pro-SFTI-1; protein, be 22.3 26 0.00088 18.1 0.5 7 149-155 21-27 (31)
78 4hi4_A Aerotaxis transducer AE 22.0 34 0.0012 21.8 1.3 31 14-45 9-40 (121)
79 3fg8_A Uncharacterized protein 21.8 43 0.0015 21.1 1.8 34 9-43 9-45 (118)
80 3tkz_A Tyrosine-protein phosph 21.4 1.3E+02 0.0044 19.4 4.2 40 11-50 44-88 (109)
81 2po3_A 4-dehydrase; external a 21.3 1.2E+02 0.0041 24.0 4.7 40 113-152 366-405 (424)
82 2z5i_A TM, general control pro 21.2 1.3E+02 0.0046 17.5 5.2 32 67-98 12-43 (52)
83 1z6m_A Conserved hypothetical 21.1 31 0.001 24.0 1.0 31 17-47 26-57 (175)
84 2z8u_A Tata-box-binding protei 21.0 62 0.0021 24.1 2.7 29 17-46 147-175 (188)
85 3fc7_A HTR-like protein, senso 21.0 46 0.0016 20.4 1.8 29 14-43 23-52 (125)
86 3mq7_A Bone marrow stromal ant 20.6 2.2E+02 0.0074 19.7 5.2 24 115-138 90-113 (121)
87 3na7_A HP0958; flagellar bioge 20.5 2.8E+02 0.0096 21.0 8.4 22 115-136 88-109 (256)
88 2f6q_A Peroxisomal 3,2-trans-e 20.5 40 0.0014 26.2 1.7 18 17-35 68-85 (280)
89 2yko_A LINE-1 ORF1P; RNA-bindi 20.5 1.5E+02 0.005 22.9 4.8 17 68-84 14-30 (233)
90 2kg5_A ARF-GAP, RHO-GAP domain 20.2 16 0.00056 24.4 -0.6 46 108-153 53-98 (100)
91 1oy5_A TRNA (guanine-N(1)-)-me 20.1 38 0.0013 26.7 1.4 12 22-33 86-97 (257)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.79 E-value=1.3e-20 Score=126.04 Aligned_cols=48 Identities=13% Similarity=0.305 Sum_probs=42.9
Q ss_pred hhhccccccccc-CceeeEEEEeCCCCceeccCCCHHHHHHHhhcCCCC
Q 042472 5 EQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHPSIEAAANRFVGLNQP 52 (157)
Q Consensus 5 ~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ryl~~~~~ 52 (157)
..||||+||||| ||+||||||||+||+|+|++|+|+.|++||+..++|
T Consensus 26 GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 26 GLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 569999999995 999999999999999999999999999999886543
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.78 E-value=4e-20 Score=126.83 Aligned_cols=48 Identities=13% Similarity=0.305 Sum_probs=44.6
Q ss_pred hhhccccccccc-CceeeEEEEeCCCCceeccCCCHHHHHHHhhcCCCC
Q 042472 5 EQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHPSIEAAANRFVGLNQP 52 (157)
Q Consensus 5 ~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ryl~~~~~ 52 (157)
..||||+||||| ||+||||||||+||+|+|++|+|+.|++||+..+.+
T Consensus 26 GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~ 74 (90)
T 3p57_A 26 GLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (90)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSC
T ss_pred hHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcc
Confidence 469999999996 999999999999999999999999999999986654
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.70 E-value=1.3e-18 Score=121.32 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=41.5
Q ss_pred hhhccccccccc-CceeeEEEEeCCCCceeccCCCHHHHHHHhhc
Q 042472 5 EQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHPSIEAAANRFVG 48 (157)
Q Consensus 5 ~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ryl~ 48 (157)
..||||+||||| ||+||||||||+||+|+|++|+++.|++||..
T Consensus 42 GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 42 GIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred hHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 479999999996 99999999999999999999999999999955
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.67 E-value=3.1e-18 Score=117.85 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=40.3
Q ss_pred hhhccccccccc-CceeeEEEEeCCCCceeccCCCHHHHHHHhh
Q 042472 5 EQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHPSIEAAANRFV 47 (157)
Q Consensus 5 ~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ryl 47 (157)
..||||+||||| ||+||||||||+||+|+|++|+|+.||++|.
T Consensus 36 GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 36 GIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred hHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 469999999996 9999999999999999999999999999774
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.65 E-value=7.9e-18 Score=117.99 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=39.6
Q ss_pred hhhccccccccc-CceeeEEEEeCCCCceeccCCCHHHHHHHh
Q 042472 5 EQQQPANQHKII-PKQQSLLEHHRSGRPFSFGHPSIEAAANRF 46 (157)
Q Consensus 5 ~~~kKA~ELSvl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ry 46 (157)
..||||+||||| ||+||||||||+||+|+|++|+|+.||+++
T Consensus 35 GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 35 GIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred hHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 479999999996 999999999999999999999999999974
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.47 E-value=2.6 Score=25.33 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
.++.|..+..+|+.+++.++++++.+...+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677888888888888888888877776554
No 7
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=67.56 E-value=32 Score=24.86 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEKT 141 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~ 141 (157)
..+..+-.+...++..++..+.....|+...... +....-+.---.+|..+-..+..+-+.|+.++..|-
T Consensus 36 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~-----L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~ 105 (180)
T 1s94_A 36 GFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDI-----LSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIE 105 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777776666665421 111111222347788888888888888888887754
No 8
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=60.78 E-value=14 Score=23.68 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 65 RQVRINELNQRHNELLCQLNEEKEWETMVKQMR 97 (157)
Q Consensus 65 ~~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~ 97 (157)
....|++||..+.+.+.+++.++.+...|.+.+
T Consensus 26 qE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 26 QEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444433
No 9
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=58.22 E-value=16 Score=18.27 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKE 88 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~ 88 (157)
..+|-++++.+++.+..+++
T Consensus 3 adelykeledlqerlrklrk 22 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666555544433
No 10
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=54.60 E-value=33 Score=20.65 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
.+++|+++...|..-++.+++-...|...++
T Consensus 18 qV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 18 EVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666555555555544
No 11
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.16 E-value=39 Score=21.56 Aligned_cols=53 Identities=15% Similarity=0.038 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 72 LNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNE 139 (157)
Q Consensus 72 l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~ 139 (157)
+...+.+|...+.-.....+.|.+.+-. --.++..|..+|..+..+++..-..
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~---------------Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALAD---------------ARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4445555555555555555555555532 1235566777777777776655443
No 12
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=52.84 E-value=27 Score=19.17 Aligned_cols=26 Identities=8% Similarity=0.076 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 70 NELNQRHNELLCQLNEEKEWETMVKQ 95 (157)
Q Consensus 70 ~~l~~e~~~l~~el~~ek~~~e~L~~ 95 (157)
+.|+.+++.-.+++..++++++.|++
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45788888888888888888887764
No 13
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=51.18 E-value=55 Score=22.28 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLN 138 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~ 138 (157)
-+++++|+.++.....||..-+.+.+.-.+. .+.|.++++-.-|..-......+..++..=+.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~----------~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKr 96 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKA----------VEVDPDDVNKSTLQNRRAAVSTLETKLGELKR 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999888888776665443333 34677788777776666666555555544333
No 14
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=49.96 E-value=54 Score=21.84 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFL 134 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~ 134 (157)
..+...|.+++.+|+.+++.+....+-|..+....... .=+ .|...+ ..+|.+....|+.+...+.
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~n-P~~-GD~~s~-~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKT-PQM-GDPASL-EPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC-GGG-CCGGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Ccc-CCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999888888888877642111 112 244445 6788888888887776653
No 15
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=49.74 E-value=33 Score=19.33 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 113 ELNHQELLQMGATIDDLHKTFLSKLNEK 140 (157)
Q Consensus 113 ~L~~~EL~~le~~Le~l~~~v~~r~~~l 140 (157)
..+.+||-.|+..|+.+-+++..-+.++
T Consensus 16 gfspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688899888888888888776665554
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.42 E-value=40 Score=23.25 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQMRTG 99 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~ 99 (157)
...+.++++.+..|+.+++..+..+..|...+..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e 68 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD 68 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4457888999999999999888888877776653
No 17
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=46.14 E-value=50 Score=20.45 Aligned_cols=36 Identities=6% Similarity=0.185 Sum_probs=29.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 107 WETPVDELNHQELLQMGATIDDLHKTFLSKLNEKTA 142 (157)
Q Consensus 107 ~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~ 142 (157)
+.+.++.++.+||.+.-.+-+...+.++.-++.|+.
T Consensus 16 lAae~~~~s~deL~~~l~eqee~n~~Le~YID~LL~ 51 (64)
T 2hv8_D 16 LAAEISSVSRDELMEAIQKQEEINFRLQDYIDRIIV 51 (64)
T ss_dssp HHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447788999999999988888888888888888654
No 18
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=45.84 E-value=31 Score=17.78 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 116 HQELLQMGATIDDLHKTFLSKLNEKTA 142 (157)
Q Consensus 116 ~~EL~~le~~Le~l~~~v~~r~~~l~~ 142 (157)
+++|..|-.+|+.--+.++.+..+++.
T Consensus 1 mdqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888764
No 19
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=43.63 E-value=3.7 Score=32.13 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=10.8
Q ss_pred ceeeEEEEeCCCCcee
Q 042472 18 KQQSLLEHHRSGRPFS 33 (157)
Q Consensus 18 AeVAlIVFSp~GK~fs 33 (157)
-+-++-+|||.||+|.
T Consensus 12 yd~~~t~fSp~Grl~Q 27 (264)
T 3h4p_A 12 YDRAITVFSPEGRLYQ 27 (264)
T ss_dssp ----CCCCCSSSSCHH
T ss_pred cCCCcceECCCCeeHH
Confidence 3556789999999993
No 20
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=42.48 E-value=51 Score=19.40 Aligned_cols=23 Identities=4% Similarity=0.071 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 042472 76 HNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 76 ~~~l~~el~~ek~~~e~L~~~~k 98 (157)
+.+++.++..+.++++.|....+
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~ 33 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLK 33 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666777777777665
No 21
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=42.46 E-value=18 Score=23.78 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=19.9
Q ss_pred cc-CceeeEEEEeCCCCceeccCCCHHHHHH
Q 042472 15 II-PKQQSLLEHHRSGRPFSFGHPSIEAAAN 44 (157)
Q Consensus 15 vl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~ 44 (157)
++ .+.-+|+|+++.|+ +-|.+|++..++.
T Consensus 4 lle~~~d~i~v~d~~G~-i~yvn~~~~~~lG 33 (111)
T 2vlg_A 4 PLQTKTDIHAVLASNGR-IIYISANSKLHLG 33 (111)
T ss_dssp -----CCEEEEECTTSB-EEEECTTHHHHHS
T ss_pred hhhcCCCEEEEEcCCCe-EEEEChHHHHHhC
Confidence 44 56667889999887 4799999877654
No 22
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=41.54 E-value=5.5 Score=30.36 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=10.4
Q ss_pred eEEEEeCCCCcee
Q 042472 21 SLLEHHRSGRPFS 33 (157)
Q Consensus 21 AlIVFSp~GK~fs 33 (157)
++-+|||.||+|.
T Consensus 3 ~~t~fsp~Grl~Q 15 (242)
T 1ryp_E 3 GVSTFSPEGRLFQ 15 (242)
T ss_dssp CTTCBCTTSCBHH
T ss_pred CCceECCCCcChH
Confidence 3458999999993
No 23
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=41.36 E-value=1.1e+02 Score=22.80 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDDLHKTFLSKLN 138 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~l~~~v~~r~~ 138 (157)
-+|++|+.++|.++...|-.-...+...+.
T Consensus 53 Lnid~Lse~~L~e~ckELh~~I~~LEeEKY 82 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLHARVDKVDEERY 82 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 388999999999999888665555554443
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.00 E-value=42 Score=23.26 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
..+.++++.+..|+.+++..+..+..|...+.
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34667888888888888888777777776664
No 25
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=39.85 E-value=93 Score=21.65 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 72 LNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEK 140 (157)
Q Consensus 72 l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l 140 (157)
+..-..+|+.-+...+...+.|.+.++.....+.++ .|+..||..-+.-+..++..|..=+.+|
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-----~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF-----KLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444555555566666666665432211222 3888899988888888888887766654
No 26
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=38.66 E-value=48 Score=17.96 Aligned_cols=27 Identities=7% Similarity=0.227 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 72 LNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 72 l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
++++....++.++.+++++..|++.++
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 344445556666667777777766665
No 27
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=38.31 E-value=3.8 Score=32.66 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=13.8
Q ss_pred CceeeEEEEeCCCCcee
Q 042472 17 PKQQSLLEHHRSGRPFS 33 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fs 33 (157)
|-+-++-+|||.||+|.
T Consensus 7 ~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 7 GYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp CTTSSTTCCCTTSCCHH
T ss_pred CccCCcccCCCCCchHH
Confidence 45667789999999994
No 28
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=38.22 E-value=47 Score=28.54 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=25.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDDLHKTFLSK 136 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~l~~~v~~r 136 (157)
-.|.+|+-+||..|...||.++++|.+.
T Consensus 97 LkvG~LskdeLm~LasDLeKLK~KV~rt 124 (577)
T 3mwp_A 97 LRVGTLTSDDLLILAADLEKLKSKVIRT 124 (577)
T ss_dssp ECSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 5688999999999999999999998765
No 29
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=37.72 E-value=4.5 Score=30.93 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=11.3
Q ss_pred eeEEEEeCCCCcee
Q 042472 20 QSLLEHHRSGRPFS 33 (157)
Q Consensus 20 VAlIVFSp~GK~fs 33 (157)
-++-+|||.||+|.
T Consensus 4 ~~~t~fsp~Grl~Q 17 (241)
T 1ryp_D 4 RALSIFSPDGHIFQ 17 (241)
T ss_dssp CCCSCCBTTTBCHH
T ss_pred CCceeECCCCcchH
Confidence 35668999999993
No 30
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=37.52 E-value=28 Score=23.13 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=18.3
Q ss_pred CCCCceeccCC-CHHHHHHHhhcC
Q 042472 27 RSGRPFSFGHP-SIEAAANRFVGL 49 (157)
Q Consensus 27 p~GK~fsFg~P-Sv~~Vi~Ryl~~ 49 (157)
|.|.+|..-+| .+..||+.++..
T Consensus 69 P~~~~y~~vt~e~v~~il~~~l~~ 92 (110)
T 1m2d_A 69 PDGVWYGQVKPEDVDEIVEKHLKG 92 (110)
T ss_dssp TTTEEECSCCGGGHHHHHHHTTTT
T ss_pred eCCEEEecCCHHHHHHHHHHHHHC
Confidence 98988777677 689999998653
No 31
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=37.33 E-value=5 Score=30.41 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=11.5
Q ss_pred eeeEEEEeCCCCce
Q 042472 19 QQSLLEHHRSGRPF 32 (157)
Q Consensus 19 eVAlIVFSp~GK~f 32 (157)
+-++-+|||.||+|
T Consensus 6 d~~~t~fsp~Grl~ 19 (233)
T 1iru_B 6 SFSLTTFSPSGKLV 19 (233)
T ss_dssp CSBSCCCCTTSCCH
T ss_pred cCCceeECCCCeEe
Confidence 34567999999999
No 32
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=37.04 E-value=63 Score=18.89 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=20.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042472 108 ETPVDELNHQELLQMGATIDDLHKTFL 134 (157)
Q Consensus 108 ~~~ve~L~~~EL~~le~~Le~l~~~v~ 134 (157)
++.-+.|+.++|+.-+.+|+.+++.-|
T Consensus 4 ~~n~~gls~eqlehrerslqtlrdi~r 30 (55)
T 3sl9_C 4 GENPDGLSQEQLEHRERSLQTLRDIQR 30 (55)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999998877543
No 33
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=36.92 E-value=4.9 Score=30.91 Aligned_cols=14 Identities=29% Similarity=0.126 Sum_probs=11.5
Q ss_pred eeeEEEEeCCCCce
Q 042472 19 QQSLLEHHRSGRPF 32 (157)
Q Consensus 19 eVAlIVFSp~GK~f 32 (157)
+-++-+|||.||+|
T Consensus 6 d~~~t~fsp~Grl~ 19 (250)
T 1ryp_B 6 SFSLTTFSPSGKLG 19 (250)
T ss_dssp CSBSSCBCTTSCBH
T ss_pred cCCceeECCCCccH
Confidence 34567999999999
No 34
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=35.73 E-value=7.8 Score=29.56 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=10.8
Q ss_pred eEEEEeCCCCcee
Q 042472 21 SLLEHHRSGRPFS 33 (157)
Q Consensus 21 AlIVFSp~GK~fs 33 (157)
++-+|||.||+|.
T Consensus 8 ~~t~fsp~Grl~Q 20 (244)
T 1ryp_C 8 RTTIFSPEGRLYQ 20 (244)
T ss_dssp CTTCBCTTSCBHH
T ss_pred CCceECcCCeeHH
Confidence 4568999999993
No 35
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=35.50 E-value=5.4 Score=30.66 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=10.7
Q ss_pred eEEEEeCCCCcee
Q 042472 21 SLLEHHRSGRPFS 33 (157)
Q Consensus 21 AlIVFSp~GK~fs 33 (157)
++-+|||.||+|.
T Consensus 6 ~~t~fsp~Grl~Q 18 (248)
T 1iru_D 6 AITVFSPDGHLFQ 18 (248)
T ss_dssp CCSCCCTTSCCHH
T ss_pred CCceECCCCcchH
Confidence 4568999999993
No 36
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=35.48 E-value=7.9 Score=29.50 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.9
Q ss_pred eeEEEEeCCCCce
Q 042472 20 QSLLEHHRSGRPF 32 (157)
Q Consensus 20 VAlIVFSp~GK~f 32 (157)
-++-+|||.||+|
T Consensus 10 ~~~t~fsp~Grl~ 22 (241)
T 1iru_E 10 RGVNTFSPEGRLF 22 (241)
T ss_dssp CCTTCBCTTSCBH
T ss_pred CCCceECCCCccH
Confidence 3556899999999
No 37
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=35.44 E-value=6.9 Score=29.87 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=10.6
Q ss_pred eEEEEeCCCCcee
Q 042472 21 SLLEHHRSGRPFS 33 (157)
Q Consensus 21 AlIVFSp~GK~fs 33 (157)
++-+|||.||+|.
T Consensus 6 ~~t~fsp~Grl~Q 18 (243)
T 1ryp_A 6 HITIFSPEGRLYQ 18 (243)
T ss_dssp TSSSCCTTSCCHH
T ss_pred CCceECCCCeeHH
Confidence 4558999999993
No 38
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=35.44 E-value=7.6 Score=29.96 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=11.9
Q ss_pred ceeeEEEEeCCCCce
Q 042472 18 KQQSLLEHHRSGRPF 32 (157)
Q Consensus 18 AeVAlIVFSp~GK~f 32 (157)
=+-++-+|||.||+|
T Consensus 7 yd~~~t~fsp~Grl~ 21 (254)
T 1iru_G 7 YDLSASTFSPDGRVF 21 (254)
T ss_dssp TTSCTTCCCTTSCCH
T ss_pred cCCCCccCCcCCccH
Confidence 344566999999999
No 39
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=35.13 E-value=7.7 Score=29.39 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.5
Q ss_pred eEEEEeCCCCcee
Q 042472 21 SLLEHHRSGRPFS 33 (157)
Q Consensus 21 AlIVFSp~GK~fs 33 (157)
++-+|||.||+|.
T Consensus 8 ~~t~fsp~Grl~Q 20 (233)
T 1ryp_F 8 DTVTFSPTGRLFQ 20 (233)
T ss_dssp CTTCCCTTSCCHH
T ss_pred CCccCCCCCeehH
Confidence 3458999999993
No 40
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.09 E-value=84 Score=19.74 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
|..|..+...+..+++.++.++..|+..+.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888877777665
No 41
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=34.74 E-value=6.9 Score=29.62 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=9.9
Q ss_pred eeeEEEEeCCCCcee
Q 042472 19 QQSLLEHHRSGRPFS 33 (157)
Q Consensus 19 eVAlIVFSp~GK~fs 33 (157)
+-++-+|||.||+|.
T Consensus 9 d~~~t~fsp~Grl~Q 23 (233)
T 1yar_A 9 SRAITVFSPDGRLFQ 23 (233)
T ss_dssp ----CCCCTTSCCHH
T ss_pred CCCCceECcCCeeHH
Confidence 445678999999993
No 42
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=34.51 E-value=8 Score=29.59 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=10.5
Q ss_pred eeEEEEeCCCCce
Q 042472 20 QSLLEHHRSGRPF 32 (157)
Q Consensus 20 VAlIVFSp~GK~f 32 (157)
-++-+|||.||+|
T Consensus 10 ~~~t~fsp~Grl~ 22 (246)
T 1j2p_A 10 RAITVFSPDGRLF 22 (246)
T ss_dssp SCTTCCCTTSCCH
T ss_pred CCCceECCCCeeh
Confidence 3455899999999
No 43
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=34.39 E-value=1.2e+02 Score=21.36 Aligned_cols=31 Identities=10% Similarity=0.094 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 109 TPVDELNHQELLQMGATIDDLHKTFLSKLNE 139 (157)
Q Consensus 109 ~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~ 139 (157)
-+|++|+.++|.++.+.|-.-...+...+..
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYD 83 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYD 83 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4699999999999998887666665555443
No 44
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=34.17 E-value=66 Score=18.25 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
+.+++...+.+.+++..+..+.+.|.+.+.
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777787888877777777766543
No 45
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=33.99 E-value=8.3 Score=29.56 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=10.3
Q ss_pred eEEEEeCCCCce
Q 042472 21 SLLEHHRSGRPF 32 (157)
Q Consensus 21 AlIVFSp~GK~f 32 (157)
++-+|||.||+|
T Consensus 7 ~~t~fsp~Grl~ 18 (244)
T 1ryp_G 7 SNSVFSPDGRNF 18 (244)
T ss_dssp STTCCCTTSCCH
T ss_pred CcccCCcCCchH
Confidence 455899999999
No 46
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.33 E-value=68 Score=18.15 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
..+..+|.....+|.+.+-.++..+..|++.++
T Consensus 9 E~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 445666777777777777777777777777654
No 47
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=32.89 E-value=8.9 Score=29.70 Aligned_cols=14 Identities=14% Similarity=0.192 Sum_probs=11.2
Q ss_pred eeEEEEeCCCCcee
Q 042472 20 QSLLEHHRSGRPFS 33 (157)
Q Consensus 20 VAlIVFSp~GK~fs 33 (157)
-++-+|||.||+|.
T Consensus 7 ~~~t~fsp~Grl~Q 20 (261)
T 1iru_C 7 SRTTIFSPEGRLYQ 20 (261)
T ss_dssp CCTTCCCTTSCCHH
T ss_pred CCCccCCCCCeehH
Confidence 34568999999993
No 48
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.69 E-value=99 Score=19.85 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKL 137 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~ 137 (157)
+++++|..++.....+|..-+.+.+.-... .+.|.++++..-+..-......+..++..=+
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~----------~e~DPDevNK~~~~~R~~~V~~lq~Ki~elk 65 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERA----------VELDPDDVNKSTLQSRRAAVSALETKLGELK 65 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999998888887776664433333 3467777777766666555555555554433
No 49
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell adapter containing SH2 domain protein; NMR {Mus musculus}
Probab=32.58 E-value=54 Score=22.70 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=29.1
Q ss_pred ccccccc-CceeeEEEE--eCCCCceecc--------CCCHHHHHHHhhcCC
Q 042472 10 ANQHKII-PKQQSLLEH--HRSGRPFSFG--------HPSIEAAANRFVGLN 50 (157)
Q Consensus 10 A~ELSvl-dAeVAlIVF--Sp~GK~fsFg--------~PSv~~Vi~Ryl~~~ 50 (157)
.+=|||+ +-.|-=+.+ ...|+.|.++ -+|+.++|+.|....
T Consensus 61 ~y~LSv~~~~~v~H~~I~~~~~g~~~~l~~~~~~~~~F~sl~eLV~~y~~~~ 112 (141)
T 2eo6_A 61 PYTLVAFFNKRVYNIPVRFIEATKQYALGKKKNGEEYFGSVVEIVNSHQHNP 112 (141)
T ss_dssp SEEEEEEETTEEEEEEECEETTTTEECSSSCCTTCCCBSSHHHHHHHHHHSC
T ss_pred CEEEEEEECCEEEEEEEEEeCCCCEEEEccccCCCCccCCHHHHHHHHhhCC
Confidence 3457886 666655544 4688877776 268999999998754
No 50
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=32.56 E-value=79 Score=21.03 Aligned_cols=28 Identities=7% Similarity=0.286 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 114 LNHQELLQMGATIDDLHKTFLSKLNEKT 141 (157)
Q Consensus 114 L~~~EL~~le~~Le~l~~~v~~r~~~l~ 141 (157)
++++||..|-..|+.....+..+...|.
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~ 33 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLS 33 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999998887763
No 51
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=32.46 E-value=1.2e+02 Score=20.79 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSK 136 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r 136 (157)
.++++|..++.....||..-+.+.+.-.+. .+.|.++++..-|..-......+..++..=
T Consensus 22 ~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~----------~e~DPDevNK~tl~~R~~~Vs~lq~KiaeL 81 (113)
T 4fi5_A 22 MTMEELQREINAHEGQLVIARQKVRDAEKQ----------YEKDPDELNKRTLTDREGVAVSIQAKIDEL 81 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999888888776665443333 336677777766666555555555554443
No 52
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.90 E-value=73 Score=18.04 Aligned_cols=29 Identities=7% Similarity=0.155 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQM 96 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~ 96 (157)
.+...+++++...+++..++++...|.+.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555666666666666666666555543
No 53
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=31.18 E-value=62 Score=22.40 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 74 QRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 74 ~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
+++.+|+.+++..++++.+|.+..+
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~ 28 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQ 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777766554
No 54
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=30.54 E-value=1.2e+02 Score=20.20 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTF 133 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v 133 (157)
+++++|+.++.....+|..-+.+.+.-... .+.|.++++..-|..-......+..++
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~----------~e~DPDevNk~~~~~R~~~V~~lq~Ki 61 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERA----------VELDPDDVNKSTLQSRRAAVSALETKL 61 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999998888887776664433333 335667777666655544444444443
No 55
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.07 E-value=2.2e+02 Score=26.77 Aligned_cols=14 Identities=0% Similarity=0.138 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 042472 125 TIDDLHKTFLSKLN 138 (157)
Q Consensus 125 ~Le~l~~~v~~r~~ 138 (157)
.|+.....++..++
T Consensus 1027 ~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 56
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=29.92 E-value=89 Score=18.43 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 042472 76 HNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 76 ~~~l~~el~~ek~~~e~L~~~~k 98 (157)
|++|..|++.+++.+..|++.+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 45666777777777777776665
No 57
>2bsj_A Chaperone protein SYCT; type III secretion, effector, YOPT; 1.83A {Yersinia enterocolitica} PDB: 2bho_A 2bsh_A 2bsi_A
Probab=29.12 E-value=36 Score=23.64 Aligned_cols=46 Identities=11% Similarity=0.308 Sum_probs=33.5
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 042472 106 WWETPVDELNHQELLQMGATIDDLHKTFLSKLNEKTANASSSMAPPMCF 154 (157)
Q Consensus 106 w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~~ass~~~~~~~~ 154 (157)
|--.++..|++++|+.- ||...+.+..|+.---.+--.+++||..|
T Consensus 87 WSQqpl~~ldvaelqAW---lErFIdDieqr~~p~~t~~~~n~~~~~~~ 132 (133)
T 2bsj_A 87 WSQQSLVGLDIDEMQAW---LERFIDDIEQRKEPQNTKFQPNSTSPILF 132 (133)
T ss_dssp EEEEESTTCCHHHHHHH---HHHHHHHHHHHTSGGGGSCCCCCCSCCCC
T ss_pred EecCccccccHHHHHHH---HHHHHHHHHHhcCCccccCCCCCCCCccc
Confidence 44578899999988764 78888888888865445555666777655
No 58
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=28.81 E-value=11 Score=29.16 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=10.6
Q ss_pred eEEEEeCCCCcee
Q 042472 21 SLLEHHRSGRPFS 33 (157)
Q Consensus 21 AlIVFSp~GK~fs 33 (157)
++-+|||.||+|.
T Consensus 9 ~~t~fsP~Grl~Q 21 (263)
T 1iru_F 9 DVTVWSPQGRIHQ 21 (263)
T ss_dssp CTTCCCTTSCCHH
T ss_pred CCccCCCCCeehH
Confidence 4558999999993
No 59
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=28.56 E-value=12 Score=28.62 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=10.7
Q ss_pred eeEEEEeCCCCce
Q 042472 20 QSLLEHHRSGRPF 32 (157)
Q Consensus 20 VAlIVFSp~GK~f 32 (157)
-++-+|||.||+|
T Consensus 11 ~~~t~fsp~Grl~ 23 (246)
T 1iru_A 11 RHITIFSPEGRLY 23 (246)
T ss_dssp TTSSCCCTTSCCH
T ss_pred CCCccCCCCCeeh
Confidence 3456899999999
No 60
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.41 E-value=1.2e+02 Score=19.45 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
.+++++|..+.+.++.++...+.-...++..++
T Consensus 36 I~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~ 68 (77)
T 2w83_C 36 IAKVDELTCEKDVLQGELEAVKQAKLKLEEKNR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777666666666655555554444
No 61
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.08 E-value=1.2e+02 Score=19.35 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 042472 72 LNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSK 136 (157)
Q Consensus 72 l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r 136 (157)
.+++++.|..+|+.+..+...|+..+.. .++-.-+.+.+..+-..|..+...+...
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~lad---------p~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVAD---------ASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC---------cccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999888888888877752 1121225667777777666666555443
No 62
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=28.06 E-value=53 Score=20.75 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=17.6
Q ss_pred eEEEEeCCCCceeccC-CCHHHHHHH
Q 042472 21 SLLEHHRSGRPFSFGH-PSIEAAANR 45 (157)
Q Consensus 21 AlIVFSp~GK~fsFg~-PSv~~Vi~R 45 (157)
-|.||.|.|.+++|-. .++-+++.+
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 3789999999999933 245555543
No 63
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.97 E-value=2.1e+02 Score=23.85 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 115 NHQELLQMGATIDDLHKTFLSKLNE 139 (157)
Q Consensus 115 ~~~EL~~le~~Le~l~~~v~~r~~~ 139 (157)
=-+-..+|+..+.-++++|...+..
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ 135 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQR 135 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444567777777777777766653
No 64
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=27.36 E-value=16 Score=22.28 Aligned_cols=30 Identities=7% Similarity=0.184 Sum_probs=23.1
Q ss_pred ccc-CceeeEEEEeCCCCceeccCCCHHHHHH
Q 042472 14 KII-PKQQSLLEHHRSGRPFSFGHPSIEAAAN 44 (157)
Q Consensus 14 Svl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~ 44 (157)
+|+ ....+|+++++.|++ -|.+|....++.
T Consensus 19 ~il~~~~~~i~~~d~~g~i-~~~N~~~~~~~g 49 (118)
T 2w0n_A 19 AMLQSIKEGVVAVDDRGEV-TLINDAAQELLN 49 (118)
T ss_dssp HHHHCCCCCCEEEBTTTBC-CCBCHHHHHHHC
T ss_pred HHHhhccccEEEECCCCcE-eehhHHHHHHhC
Confidence 467 889999999999986 567776665553
No 65
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.75 E-value=1.4e+02 Score=19.74 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 71 ELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFLSKLNEKT 141 (157)
Q Consensus 71 ~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~ 141 (157)
.+-.+++.++..++.++...+.|...... .+-..+.+.-.-.+|..+-..+..+-..|+.++..+-
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~-----~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~ 74 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVEEVKRKHSA-----ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIE 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444444444331 1111111222334667777777777777777776653
No 66
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=26.67 E-value=72 Score=21.62 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 110 PVDELNHQELLQMGATIDDLHKTFLSKLNE 139 (157)
Q Consensus 110 ~ve~L~~~EL~~le~~Le~l~~~v~~r~~~ 139 (157)
+|+.|+.++|.++.+.|-.-...|...+..
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYD 67 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFD 67 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 678899999999988886665665555433
No 67
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=26.08 E-value=54 Score=20.31 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=22.4
Q ss_pred CceeeEEEEeCCCCceeccCCCHHHHHH
Q 042472 17 PKQQSLLEHHRSGRPFSFGHPSIEAAAN 44 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~PSv~~Vi~ 44 (157)
.+...|+++++.|++ .|.+|++..++.
T Consensus 10 ~~~d~i~~~d~~g~i-~~~n~~~~~~~G 36 (121)
T 3f1p_B 10 QPTRFISRHNIEGIF-TFVDHRCVATVG 36 (121)
T ss_dssp CCCEEEEEECTTSBE-EEECTTHHHHHS
T ss_pred CCCceEEEECCCceE-EEECcchhhhhC
Confidence 788889999999975 788998877764
No 68
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=25.71 E-value=86 Score=22.38 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---------CcccC--CCCC---CCHHHHHHHH-HHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQP---------CWWET--PVDE---LNHQELLQMG-ATIDDLHKT 132 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~---------~w~~~--~ve~---L~~~EL~~le-~~Le~l~~~ 132 (157)
++..+-++..+++++++..+++.+...-.-. ++++. ....- |-+- -+.+.|+.|- .++.++.++
T Consensus 42 nm~~mmkQAQkmQ~km~k~QeeL~~~eveg~-sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~k 120 (143)
T 1ybx_A 42 NINNLVKQAQKMQRDMERVQEELKEKTVEAS-AGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRK 120 (143)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHCEEEEE-ETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCEEEEE-ECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777666555432211001 11110 11111 1122 3444444432 235566666
Q ss_pred HHHHHHHHHhhcCCCCC-CCCcc
Q 042472 133 FLSKLNEKTANASSSMA-PPMCF 154 (157)
Q Consensus 133 v~~r~~~l~~~ass~~~-~~~~~ 154 (157)
+.....+.|..-+.-.. ||-+|
T Consensus 121 a~e~~~e~M~~ltgGl~lpPG~f 143 (143)
T 1ybx_A 121 ADEMVTAEISKITGGLGGIPGLF 143 (143)
T ss_dssp HHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHhCCCCCCCCCC
Confidence 66666666666665543 35333
No 69
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.64 E-value=75 Score=26.27 Aligned_cols=54 Identities=7% Similarity=0.113 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042472 66 QVRINELNQRHNELLCQLNEEKEWETMVKQMRTGKESQPCWWETPVDELNHQELLQMGATIDDLHKTFL 134 (157)
Q Consensus 66 ~~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k~~~~~~~w~~~~ve~L~~~EL~~le~~Le~l~~~v~ 134 (157)
...+..++++..++.+.++..+.+.+.+.+.... ....-..|...|.+++.+|+
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~rr~l~n~~~elkgnIr 62 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIK---------------EETVRRTLHNELQELRGNIR 62 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHcCCCeE
No 70
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=25.63 E-value=44 Score=20.57 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=21.5
Q ss_pred cCceeeEEEEeCCCCceeccCCCHHHHHH
Q 042472 16 IPKQQSLLEHHRSGRPFSFGHPSIEAAAN 44 (157)
Q Consensus 16 ldAeVAlIVFSp~GK~fsFg~PSv~~Vi~ 44 (157)
+++...++++++.|++ .|.+|++..++.
T Consensus 6 l~~~~~i~~~d~~g~i-~~~n~~~~~~~G 33 (117)
T 3f1p_A 6 LDSKTFLSEHSMDMKF-TYCDDRITELIG 33 (117)
T ss_dssp TGGGEEEEEECTTCBE-EEECTHHHHHHC
T ss_pred cCCccEEEEECCCceE-EEECcChhhhhC
Confidence 4667789999999985 788887766654
No 71
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.36 E-value=1.5e+02 Score=19.21 Aligned_cols=26 Identities=8% Similarity=0.085 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 71 ELNQRHNELLCQLNEEKEWETMVKQM 96 (157)
Q Consensus 71 ~l~~e~~~l~~el~~ek~~~e~L~~~ 96 (157)
.|+.+++.+..++..+++.++.|+..
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544443
No 72
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2; SH2, phosphoinositide phospholipase C, PLC-gamma-2, phospholipase C-gamma-2; NMR {Rattus norvegicus}
Probab=24.16 E-value=1e+02 Score=20.74 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=28.2
Q ss_pred ccccccc-CceeeEEEEeCCCCceecc----CCCHHHHHHHhhcCC
Q 042472 10 ANQHKII-PKQQSLLEHHRSGRPFSFG----HPSIEAAANRFVGLN 50 (157)
Q Consensus 10 A~ELSvl-dAeVAlIVFSp~GK~fsFg----~PSv~~Vi~Ryl~~~ 50 (157)
.+=|||+ +-.|-=+.+...|..|.++ .+|+.++|+.|....
T Consensus 54 ~y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~~~ 99 (124)
T 2eob_A 54 SYAITFRARGKVKHCRINRDGRHFVLGTSAYFESLVELVSYYEKHA 99 (124)
T ss_dssp CEEEEEEETTEEEEEEEEESSSCEESSSSCCBSSHHHHHHHHTTSC
T ss_pred CEEEEEEeCCeEEEEEEEECCCEEEECCCCcCCCHHHHHHHHhhCC
Confidence 3447776 6666555445567778774 368999999998743
No 73
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=23.87 E-value=1.5e+02 Score=19.27 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=20.6
Q ss_pred eEEEEeCCCCceec-cCCC---HHHHHHHhhcCCC
Q 042472 21 SLLEHHRSGRPFSF-GHPS---IEAAANRFVGLNQ 51 (157)
Q Consensus 21 AlIVFSp~GK~fsF-g~PS---v~~Vi~Ryl~~~~ 51 (157)
.+++|.+.|++..| |..+ +.+.|++++...+
T Consensus 95 t~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~~~~~ 129 (136)
T 2l5l_A 95 SILFIPMEGKPEMAQGAMPKASFKKAIDEFLLKKE 129 (136)
T ss_dssp EEEEECSSSCCEEEESCCCHHHHHHHHHHHHTSCT
T ss_pred EEEEECCCCcEEEEeCCCCHHHHHHHHHHHhhccC
Confidence 56788889988655 5544 4566777766543
No 74
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.68 E-value=88 Score=18.47 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042472 71 ELNQRHNELLCQLNEEKEWETMV 93 (157)
Q Consensus 71 ~l~~e~~~l~~el~~ek~~~e~L 93 (157)
.+-..|+.+..+...++++.+.+
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554433
No 75
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.66 E-value=1.6e+02 Score=19.15 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 69 INELNQRHNELLCQLNEEKEWETMVKQMR 97 (157)
Q Consensus 69 i~~l~~e~~~l~~el~~ek~~~e~L~~~~ 97 (157)
+.+|..+-..|..+++.+++....|...+
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 76
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=23.00 E-value=40 Score=24.83 Aligned_cols=27 Identities=0% Similarity=-0.058 Sum_probs=18.8
Q ss_pred cCceeeEEEEeCCCCceeccCC--C---HHHHHHHhh
Q 042472 16 IPKQQSLLEHHRSGRPFSFGHP--S---IEAAANRFV 47 (157)
Q Consensus 16 ldAeVAlIVFSp~GK~fsFg~P--S---v~~Vi~Ryl 47 (157)
-++.++|||||++ |.++ | +..++++..
T Consensus 61 e~Sri~IvV~S~n-----y~~S~WCl~EL~~i~~~~~ 92 (176)
T 3jrn_A 61 EVSRFAVVVVSEN-----YAASSWCLDELVTIMDFEK 92 (176)
T ss_dssp TTEEEEEEEECTT-----TTTCHHHHHHHHHHHHHHH
T ss_pred HhCCEEEEEecCC-----cCCChhHHHHHHHHHhhhc
Confidence 3899999999996 5433 3 446666654
No 77
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=22.31 E-value=26 Score=18.08 Aligned_cols=7 Identities=57% Similarity=1.640 Sum_probs=4.6
Q ss_pred CCCCccc
Q 042472 149 APPMCFR 155 (157)
Q Consensus 149 ~~~~~~~ 155 (157)
-||+||-
T Consensus 21 ippicfp 27 (31)
T 2ab9_A 21 IPPICFP 27 (31)
T ss_dssp SSCSSSS
T ss_pred CCCcccC
Confidence 4777774
No 78
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=22.00 E-value=34 Score=21.80 Aligned_cols=31 Identities=3% Similarity=0.046 Sum_probs=26.0
Q ss_pred ccc-CceeeEEEEeCCCCceeccCCCHHHHHHH
Q 042472 14 KII-PKQQSLLEHHRSGRPFSFGHPSIEAAANR 45 (157)
Q Consensus 14 Svl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi~R 45 (157)
+|+ ....+|+++.+.|++ .|.+|.+..++..
T Consensus 9 ~il~~~~~gviv~D~~g~I-~~~N~a~~~llg~ 40 (121)
T 4hi4_A 9 SALDNVSANVMIADNDLNI-IYMNRTVSEMLGR 40 (121)
T ss_dssp HHHTTSSSEEEEEETTCBE-EEECHHHHHHHHH
T ss_pred HHHhcCCccEEEEcCCCeE-EEecHHHHHHHHH
Confidence 367 788999999999987 7888888888764
No 79
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=21.77 E-value=43 Score=21.10 Aligned_cols=34 Identities=3% Similarity=-0.037 Sum_probs=22.8
Q ss_pred ccccc--ccc-CceeeEEEEeCCCCceeccCCCHHHHH
Q 042472 9 PANQH--KII-PKQQSLLEHHRSGRPFSFGHPSIEAAA 43 (157)
Q Consensus 9 KA~EL--Svl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi 43 (157)
++++- +|+ .+..+|+++.+.|++ -|.+|....++
T Consensus 9 ~~~~~~~~il~~~~~~i~~~D~~g~i-~~~N~a~~~l~ 45 (118)
T 3fg8_A 9 HHSSGRENLYFQGGLGFMALDEDLRI-IYVNSGCLRHV 45 (118)
T ss_dssp ----CCCCSSSCTTCEEEEECTTCBE-EEECHHHHHHH
T ss_pred cccchHHHHHhhCCceEEEECCCCeE-EEECHHHHHHh
Confidence 44443 377 889999999999986 56777655554
No 80
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=21.42 E-value=1.3e+02 Score=19.43 Aligned_cols=40 Identities=5% Similarity=0.180 Sum_probs=27.4
Q ss_pred cccccc-CceeeEEEEeCCCCceec-c---CCCHHHHHHHhhcCC
Q 042472 11 NQHKII-PKQQSLLEHHRSGRPFSF-G---HPSIEAAANRFVGLN 50 (157)
Q Consensus 11 ~ELSvl-dAeVAlIVFSp~GK~fsF-g---~PSv~~Vi~Ryl~~~ 50 (157)
+=|||+ +-.|-=+.+-..|..|.+ + .||+.++|+-|....
T Consensus 44 y~LSv~~~~~v~H~~I~~~~~~~~~~~~~~F~sl~~LV~~y~~~~ 88 (109)
T 3tkz_A 44 FTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHH 88 (109)
T ss_dssp EEEEEEETTEEEEEEEEECSSCEESSSSCCBSSHHHHHHHHHHST
T ss_pred EEEEEEECCEEEEEEEEeCCCEEEecCCcccCCHHHHHHHHHhCc
Confidence 347776 666655555556777765 2 369999999998754
No 81
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=21.32 E-value=1.2e+02 Score=24.04 Aligned_cols=40 Identities=8% Similarity=0.106 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 042472 113 ELNHQELLQMGATIDDLHKTFLSKLNEKTANASSSMAPPM 152 (157)
Q Consensus 113 ~L~~~EL~~le~~Le~l~~~v~~r~~~l~~~ass~~~~~~ 152 (157)
.++.+|+..+-+.|..+.+........+..++.-+++||.
T Consensus 366 ~~t~e~i~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (424)
T 2po3_A 366 AIGDDDIRRVADLLRLCATRGRELTARHRDTAPAPLAAPQ 405 (424)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CCCHHHHHHHHHHHHHHHhhhHHHhhhhccCCCCcccCCC
Confidence 3478999999999999998888888888888888877774
No 82
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.22 E-value=1.3e+02 Score=17.47 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042472 67 VRINELNQRHNELLCQLNEEKEWETMVKQMRT 98 (157)
Q Consensus 67 ~~i~~l~~e~~~l~~el~~ek~~~e~L~~~~k 98 (157)
..+..|.+.+.+|..++..++.+...+.+.+.
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34778999999999999988888877776654
No 83
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=21.12 E-value=31 Score=24.04 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=26.4
Q ss_pred CceeeEEEEeCCCCceec-cCCCHHHHHHHhh
Q 042472 17 PKQQSLLEHHRSGRPFSF-GHPSIEAAANRFV 47 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsF-g~PSv~~Vi~Ryl 47 (157)
+|.|-|++|+.-.=+|++ .+|.+..++++|.
T Consensus 26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~ 57 (175)
T 1z6m_A 26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSV 57 (175)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcchHHHHHHHHHHHHHHh
Confidence 789999999998888877 5788889999984
No 84
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=21.02 E-value=62 Score=24.07 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=22.9
Q ss_pred CceeeEEEEeCCCCceeccCCCHHHHHHHh
Q 042472 17 PKQQSLLEHHRSGRPFSFGHPSIEAAANRF 46 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg~PSv~~Vi~Ry 46 (157)
+=.+.++|||+ ||+.--|.-|.+++-.-+
T Consensus 147 ~Pk~t~lIF~S-GKiviTGaks~~~~~~A~ 175 (188)
T 2z8u_A 147 DPKVVVLIFGS-GKVVITGLKSEEDAKRAL 175 (188)
T ss_dssp TTEEEEEECTT-SEEEEESCSCHHHHHHHH
T ss_pred CCcEEEEEeCC-CEEEEEecCCHHHHHHHH
Confidence 67899999987 999999988866554443
No 85
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=20.99 E-value=46 Score=20.37 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=20.4
Q ss_pred ccc-CceeeEEEEeCCCCceeccCCCHHHHH
Q 042472 14 KII-PKQQSLLEHHRSGRPFSFGHPSIEAAA 43 (157)
Q Consensus 14 Svl-dAeVAlIVFSp~GK~fsFg~PSv~~Vi 43 (157)
+|+ .+..+|+++.+.|++ -|.+|....++
T Consensus 23 ~i~~~~~~~i~~~d~~g~i-~~~N~~~~~~~ 52 (125)
T 3fc7_A 23 SLVSDSPDGIVHLTTNGTI-LSVNPSMAGRL 52 (125)
T ss_dssp ---CCSCCEEEEEETTSBE-EEECHHHHHHH
T ss_pred HHHhcCCCeEEEEcCCCeE-EEECHHHHHHh
Confidence 467 889999999999976 56777655554
No 86
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.63 E-value=2.2e+02 Score=19.70 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 042472 115 NHQELLQMGATIDDLHKTFLSKLN 138 (157)
Q Consensus 115 ~~~EL~~le~~Le~l~~~v~~r~~ 138 (157)
-..++++|...-+.+..+|-..+.
T Consensus 90 a~ae~erlr~~~~~~~~r~~~~~~ 113 (121)
T 3mq7_A 90 ASAEVERLRRENQVLSVRIADKKY 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhhchhhhhHhhhccc
Confidence 356777777777777777665554
No 87
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.54 E-value=2.8e+02 Score=20.97 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 042472 115 NHQELLQMGATIDDLHKTFLSK 136 (157)
Q Consensus 115 ~~~EL~~le~~Le~l~~~v~~r 136 (157)
+..|+..|.+.++.+.+.+..-
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777776666666555443
No 88
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=20.53 E-value=40 Score=26.17 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=14.5
Q ss_pred CceeeEEEEeCCCCceecc
Q 042472 17 PKQQSLLEHHRSGRPFSFG 35 (157)
Q Consensus 17 dAeVAlIVFSp~GK~fsFg 35 (157)
|-+| +||++.+|+.|+-|
T Consensus 68 d~~v-~vVltg~g~~FcaG 85 (280)
T 2f6q_A 68 DDSI-ITVLTGNGDYYSSG 85 (280)
T ss_dssp SSCS-EEEEEESTTCSBCC
T ss_pred CCCE-EEEEeCCCCCcccC
Confidence 6688 88888889988765
No 89
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=20.48 E-value=1.5e+02 Score=22.95 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 042472 68 RINELNQRHNELLCQLN 84 (157)
Q Consensus 68 ~i~~l~~e~~~l~~el~ 84 (157)
++.+|...++++.+..+
T Consensus 14 rIs~le~rleei~q~eq 30 (233)
T 2yko_A 14 RVSAAEDEINEIKREGK 30 (233)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 90
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=20.23 E-value=16 Score=24.37 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=35.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 042472 108 ETPVDELNHQELLQMGATIDDLHKTFLSKLNEKTANASSSMAPPMC 153 (157)
Q Consensus 108 ~~~ve~L~~~EL~~le~~Le~l~~~v~~r~~~l~~~ass~~~~~~~ 153 (157)
++.+-.|+.+||.++--..-.-+++|...+..+....++++.+|..
T Consensus 53 ~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~Lr~~~~~~p~~p~~ 98 (100)
T 2kg5_A 53 AGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGSLDPKSDSA 98 (100)
T ss_dssp HHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTTTTCCCSCCCCCCC
T ss_pred HHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHHHhcccCCCCCCCC
Confidence 4567789999999987777777888888888877777777777653
No 91
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, B structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
Probab=20.11 E-value=38 Score=26.69 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=10.8
Q ss_pred EEEEeCCCCcee
Q 042472 22 LLEHHRSGRPFS 33 (157)
Q Consensus 22 lIVFSp~GK~fs 33 (157)
||.+||.||+|.
T Consensus 86 vI~lsP~G~~f~ 97 (257)
T 1oy5_A 86 VLITEPWGEKLN 97 (257)
T ss_dssp EEEECTTBCCCC
T ss_pred EEEECCCCCcCC
Confidence 899999999885
Done!