Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>042473
MFERKFYKTRICVLYQKGRCSRPTCSFAHGDAELRRPFRSHHGGPDYRVGDLRDKLDRRL
SPQKIYSPGRDTRGRNRFRGLSPSRSPENKSDRKRWKKQHLDGPREFSASLKISDGINDR
VKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQ
LQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDS
SINIMSDEETTNYHLVDPQNEKQTIPSPNKKKLHVDRDTTNGFVPEANLTKDGGRVAESV
HLKEVSWWNQHPTNHGSVADESKLKGKNVSTSWFSAQAKNVRSANALALPSTGIAAHVND
EEIEVEVEQIEEIDMASAGTGKGATYMAKGLQFRLPPPLPIPRNAYIE

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042473
        (408 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2093044 - symbol:AT3G21810 species:3702 "Arabi...   461  1.0e-43   1


>TAIR|locus:2093044 [details] [associations]
            symbol:AT3G21810 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677
            GO:GO:0008270 EMBL:AB025634 UniGene:At.43333 UniGene:At.5858
            HSSP:P47974 EMBL:AY059899 EMBL:AY128791 IPI:IPI00528291
            RefSeq:NP_566691.1 ProteinModelPortal:Q93XW7 SMR:Q93XW7
            PRIDE:Q93XW7 EnsemblPlants:AT3G21810.1 GeneID:821735
            KEGG:ath:AT3G21810 TAIR:At3g21810 eggNOG:NOG237616
            HOGENOM:HOG000107454 InParanoid:Q93XW7 OMA:RRHNMDS PhylomeDB:Q93XW7
            ProtClustDB:CLSN2917221 Genevestigator:Q93XW7 Uniprot:Q93XW7
        Length = 437

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 131/377 (34%), Positives = 183/377 (48%)

Query:     7 YKTRICVLYQK-GRCSRPTCSFAHGDAELRRP----F--RSHHGGPDYRV------GDLR 53
             YKT++C+L+ K G CSRP C+FAHG+AELRRP    F  R H+   D R        DLR
Sbjct:     7 YKTKLCILFNKTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHNMDSDLR 66

Query:    54 DKLDRRLSPQKIYSPGRDTRGRNRFRGLSPSRSPENKSDRKRWKKQHLDGPREFSASLKI 113
             D+L R+ SP++  S  R  R   RF G   S   EN+ D+   + +  D  R+++  LK+
Sbjct:    67 DRLGRQFSPERRPSLDRSGRRVQRFSGHDNSMPFENRRDKDYRENRRFDERRDYAGGLKV 126

Query:   114 SDGINDRVKERKFTPSDSXXXXXXXXXXXXXDINVLEDRKLQLETNEEEKGQEADILSSR 173
              + I DR ++ +                   D+ +L D KL+LE + E K  E DIL+SR
Sbjct:   127 GNRIEDRAEDGRNKFHGYNNVLEEQLKDVEMDVKMLTDDKLRLEASVERKAHEVDILTSR 186

Query:   174 IXXXXXXXXXXXXXXXRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKV 233
             I               RI S  KKFVK +NR  + QDDLKRS+ARLQKLG  L       
Sbjct:   187 IQELETQLDREKDECRRITSSSKKFVKEYNRFLRAQDDLKRSEARLQKLGNQLSTYLAGS 246

Query:   234 GGNEEDSSINIMSDEETTNYHL---VDPQNEKQTIPSPNKKKLHVDRDTTNGFVPEANLT 290
              GN  D  ++I+SDEET   +L    DP NE Q   S ++KK +VD+ TT   V +  + 
Sbjct:   247 EGNNRDVGLDIVSDEETNGRNLRTACDPHNELQNTSSLSRKKHYVDQYTTKEPVEDGLIG 306

Query:   291 KDGGRVAESVHLKEVSWWNQHPTNH------GSVADESKL-KGKNVSTSWFSAQAKNVRS 343
             +      E+   K    WN   +        G+  DE  + +  +   +W   +     S
Sbjct:   307 RGEEEKVEN-EKKRPPCWNMLSSKSYSEEESGAWNDEDTINRSSSKEDNWKRRRFSIGTS 365

Query:   344 ANALALPSTGIAAHVND 360
             A    + ST +AA   D
Sbjct:   366 ATDKVILSTSMAAREFD 382


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      408       367   0.00084  117 3  11 23  0.45    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  240 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.80u 0.11s 34.91t   Elapsed:  00:00:01
  Total cpu time:  34.80u 0.11s 34.91t   Elapsed:  00:00:01
  Start:  Fri May 10 09:36:26 2013   End:  Fri May 10 09:36:27 2013

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