BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042473
         (408 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D2Q|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain
 pdb|3D2Q|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain
 pdb|3D2Q|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain
 pdb|3D2Q|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain
 pdb|3D2S|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain In Complex With Cgcugu Rna
 pdb|3D2S|B Chain B, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain In Complex With Cgcugu Rna
 pdb|3D2S|C Chain C, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain In Complex With Cgcugu Rna
 pdb|3D2S|D Chain D, Crystal Structure Of Mbnl1 Tandem Zinc Finger 3 And 4
          Domain In Complex With Cgcugu Rna
          Length = 70

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 11 ICVLYQKGRCSRPTCSFAHGDAELR 35
          +C+ Y KGRCSR  C + H  A L+
Sbjct: 44 VCMDYIKGRCSREKCKYFHPPAHLQ 68


>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
          Nup475TTPTIS11
          Length = 77

 Score = 29.3 bits (64), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 7  YKTRICVLY-QKGRCSR-PTCSFAHGDAELRRPFR 39
          YKT +C  Y + GRC     C FAHG  ELR+  R
Sbjct: 10 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR 44


>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of
          Muscleblind- Like 2, Isoform 1 [homo Sapiens]
          Length = 98

 Score = 28.5 bits (62), Expect = 7.2,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 11 ICVLYQKGRCSRPTCSFAHGDAELR 35
          +C+ Y KGRC R  C + H  A L+
Sbjct: 58 VCMDYIKGRCMREKCKYFHPPAHLQ 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,407,686
Number of Sequences: 62578
Number of extensions: 453231
Number of successful extensions: 663
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 7
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)