BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042473
(408 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6H7U2|C3H13_ORYSJ Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa
subsp. japonica GN=Os02g0161200 PE=2 SV=1
Length = 426
Score = 221 bits (564), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 165/431 (38%), Positives = 234/431 (54%), Gaps = 59/431 (13%)
Query: 7 YKTRICVLYQKGRCSRPTCSFAHGDAELRRP------FRSHHGGPDYRVGDLRDKLDRRL 60
YKT++C L+Q+G C+R TCSFAHG ++RRP F H G DYR GD R ++DRR
Sbjct: 11 YKTKLCALWQRGNCNRDTCSFAHGHGDIRRPPSSRGAFTHHPGRRDYRAGDFRGRIDRRF 70
Query: 61 SPQKIYSPGRDTRGR---------NRFRGLSPSRSPENKSDRKRWKKQHLDGPREFSASL 111
SP++ +SPGR++RG +R R S SRSP KS+R+ KK DG S SL
Sbjct: 71 SPRRRHSPGRESRGHRPLYDRRPSSRERDSSYSRSPSRKSERRHEKKTD-DGETNSSRSL 129
Query: 112 KISDGINDRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILS 171
+SD ND K+ KF+ D K +QLK+++LD+ L D K Q+E +EK E +S
Sbjct: 130 SLSDN-NDEKKKDKFSSGDEKEDHEKQLKQIRLDMEALRDDKTQMEVILDEKIDEVRKIS 188
Query: 172 SRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDAT 231
S++ +LE QL++EK+E R+ SK+KKF+KAH R + Q+++KRSQAR ++LG L D
Sbjct: 189 SKVNDLEVQLRREKDECHRMTSKMKKFIKAHARFLKAQEEVKRSQARFERLGDLLASDIL 248
Query: 232 KVGGNEEDSSINIMSDEETTNYHLVDPQNEKQTIPSPN-------KKKLHVDRDTTN--- 281
K G NEE SS+N +E + N +K++IP KK+ D DT
Sbjct: 249 KRGANEEGSSVNEDLNERSPNTAAT----KKRSIPYSTSEEAKAVKKRRERDSDTMTRSD 304
Query: 282 ---GFVPEANLTKDGGRVAESVHLKEVSWWNQHPTNHGSVADESKLKGKNVSTSWFSAQA 338
V + + T G +S++LK+ W ++ +SKL G N+ F+ +
Sbjct: 305 KYRSDVTDFDKTSKGTEATKSLYLKKKLWEDE----------KSKL-GANI----FTEKV 349
Query: 339 KNVRSANALALPSTGIAAHVND---EEIEVEVEQIEEIDMASAGTGKGATYMAKGLQFRL 395
K S LPSTG+AAH D E IE+E ++ E ID T + L
Sbjct: 350 KG--SPVRHVLPSTGMAAHAIDDLNEAIELE-DRHESIDALLENDADDKT---RSPAIPL 403
Query: 396 PPPLPIPRNAY 406
PP P+ +NAY
Sbjct: 404 QPP-PVVQNAY 413
>sp|Q93XW7|C3H40_ARATH Zinc finger CCCH domain-containing protein 40 OS=Arabidopsis
thaliana GN=At3g21810 PE=1 SV=1
Length = 437
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 208/397 (52%), Gaps = 40/397 (10%)
Query: 6 FYKTRICVLYQK-GRCSRPTCSFAHGDAELRRPF------RSHHGGPDYRV------GDL 52
YKT++C+L+ K G CSRP C+FAHG+AELRRP R H+ D R DL
Sbjct: 6 MYKTKLCILFNKTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHNMDSDL 65
Query: 53 RDKLDRRLSPQKIYSPGRDTRGRNRFRGLSPSRSPENKSDRKRWKKQHLDGPREFSASLK 112
RD+L R+ SP++ S R R RF G S EN+ D+ + + D R+++ LK
Sbjct: 66 RDRLGRQFSPERRPSLDRSGRRVQRFSGHDNSMPFENRRDKDYRENRRFDERRDYAGGLK 125
Query: 113 ISDGINDRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSS 172
+ + I DR ++ + VL EQLK+V++D+ +L D KL+LE + E K E DIL+S
Sbjct: 126 VGNRIEDRAEDGRNKFHGYNNVLEEQLKDVEMDVKMLTDDKLRLEASVERKAHEVDILTS 185
Query: 173 RIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATK 232
RI+ELETQL +EK+E +RI S KKFVK +NR + QDDLKRS+ARLQKLG L
Sbjct: 186 RIQELETQLDREKDECRRITSSSKKFVKEYNRFLRAQDDLKRSEARLQKLGNQLSTYLAG 245
Query: 233 VGGNEEDSSINIMSDEETTNYHL---VDPQNEKQTIPSPNKKKLHVDRDTTNGFVPEANL 289
GN D ++I+SDEET +L DP NE Q S ++KK +VD+ TT V + +
Sbjct: 246 SEGNNRDVGLDIVSDEETNGRNLRTACDPHNELQNTSSLSRKKHYVDQYTTKEPVEDGLI 305
Query: 290 TKDGGRVAESVHLKEVSW---------------WNQHPTNHGSVADESKLKGKNVSTSWF 334
+ E+ + W WN T + S + E K + S
Sbjct: 306 GRGEEEKVENEKKRPPCWNMLSSKSYSEEESGAWNDEDTINRSSSKEDNWKRRRFSIGT- 364
Query: 335 SAQAKNVRSANALALPSTGIAAHVNDEEIEVEVEQIE 371
SA + ST +AA D+ E E E E
Sbjct: 365 --------SATDKVILSTSMAAREFDDVAESEEENPE 393
>sp|Q5VR07|C3H1_ORYSJ Zinc finger CCCH domain-containing protein 1 OS=Oryza sativa
subsp. japonica GN=Os01g0174600 PE=2 SV=1
Length = 279
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 3 ERKFYKTRIC-VLYQKGRCS-RPTCSFAHGDAELRRPFRSHHGG 44
E+ FYKTR+C GRC C+FAHGD ELR + GG
Sbjct: 53 EKLFYKTRVCETFVTSGRCMFEDGCTFAHGDEELRPSLTACAGG 96
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 7 YKTRICVLYQKGRCSRPT-CSFAHGDAELRR 36
YKT+IC Y KG C+ C FAHG++ELRR
Sbjct: 206 YKTKICDRYSKGNCTYGDRCHFAHGESELRR 236
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 4 RKFYKTRICVLYQKGRCSRPT-CSFAHGDAELRRP 37
+ F+KT++C ++ G C T C+FAHG ELR+P
Sbjct: 85 KMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKP 119
>sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=4
Length = 8797
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 18/129 (13%)
Query: 106 EFSASLKISDGINDRVKERKFTPSDSKVVLLEQLKEVQLDINVL-------EDRKLQLET 158
E + LKI D I D++KE + + + S+ L Q++++ D+ + D +Q +T
Sbjct: 5402 EVALDLKIRDQIQDKIKEVEQSKATSQE-LSRQIQKLAKDLTTILTKLKAKTDNVVQAKT 5460
Query: 159 NEEEKGQEADILSSRIKELETQLQKEKEES----KRIASKIKKFVKAHNRHSQMQDDLKR 214
+++ G+E D +S++ EL+ +QK E++ K +A KI K + H Q +++
Sbjct: 5461 DQKVLGEELDGCNSKLMELDAAVQKFLEQNGQLGKPLAKKIGKLTELH------QQTIRQ 5514
Query: 215 SQARLQKLG 223
++ RL KL
Sbjct: 5515 AENRLSKLN 5523
>sp|Q96U60|NDC80_NEUCR Probable kinetochore protein ndc-80 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=ndc-80 PE=3 SV=1
Length = 743
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKG---QEADILSSRIKELETQLQKEKEESKR 190
VL E+L ++ +++ E+ + Q++ +++G Q+ D ++S + L+ ++ S+R
Sbjct: 403 VLREELGKLHVELKEAEEERRQMQKAVDDQGISMQDIDRMTSERERLQRSIESA---SQR 459
Query: 191 IASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGL-DATKVGGNEEDSSINIMSDEE 249
+ KK + SQ D+L+R + + Y +GL AT V ++ + + +E
Sbjct: 460 LEDVKKKVAEREMEASQRLDELERLVEKYNTVAYQIGLIPATAVNAKGKNLELQVTVNEG 519
Query: 250 TTNYHLVDPQNEKQTIPSPNKKKL------HVDRDTTNGFVPEANLTKD 292
T N+ + Q + PN + L + D+T G+ P L D
Sbjct: 520 TPNF-----ASSMQGVLGPNGQPLGGVENERLLADSTTGYQPAHILNLD 563
>sp|Q8CGU1|CACO1_MOUSE Calcium-binding and coiled-coil domain-containing protein 1 OS=Mus
musculus GN=Calcoco1 PE=1 SV=2
Length = 691
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIA 192
VL QL E Q + N L KLQLE E L SR++ELE L ++E +
Sbjct: 147 TVLQNQLDESQQERNDLMQLKLQLEDQVTE-------LRSRVQELEAALATARQEHSELT 199
Query: 193 SKIKKFVKAHNRHSQMQDDLKRSQ 216
+ K ++H S+ +D L + Q
Sbjct: 200 EQYKGLSRSHGELSEERDILSQQQ 223
>sp|Q2KJ21|CACO1_BOVIN Calcium-binding and coiled-coil domain-containing protein 1 OS=Bos
taurus GN=CALCOCO1 PE=2 SV=1
Length = 680
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIA 192
VL QL E Q + N L KLQLE GQ + L S+++ELE L ++E +A
Sbjct: 147 TVLQNQLDESQQERNDLMQLKLQLE------GQVTE-LKSQVQELEKALAAARQEHAELA 199
Query: 193 SKIKKFVKAHNRHSQMQDDLKRSQ 216
+ K ++H ++ +D L R Q
Sbjct: 200 EQYKGLSRSHGELTEERDILSRQQ 223
>sp|Q66HR5|CACO1_RAT Calcium-binding and coiled-coil domain-containing protein 1
OS=Rattus norvegicus GN=Calcoco1 PE=2 SV=1
Length = 691
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIA 192
VL QL E Q + N L KLQLE E L SR++ELE L ++E +
Sbjct: 147 TVLQNQLDESQQERNDLMQLKLQLEDQVTE-------LRSRVQELEAALATARQEHSELT 199
Query: 193 SKIKKFVKAHNRHSQMQDDLKRSQ 216
+ K ++H S+ +D L + Q
Sbjct: 200 EQYKGLSRSHGELSEERDILSQQQ 223
>sp|Q5I0B9|ATG16_XENTR Autophagy-related protein 16 OS=Xenopus tropicalis GN=atg16 PE=2
SV=2
Length = 622
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 122 KERKFTPSDSKVV-LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQ 180
K+++ ++ K+ L+ +++++ + L ++ +LE + E D L LE +
Sbjct: 120 KDKEIQANEEKIAKYLQTIQDLETECQDLRNKLQELERANQTLKDEYDALQITFTALEDK 179
Query: 181 LQKEKEESKRIASK--IKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEE 238
L+K E+++ + S+ +K +A+ +++ + D KR QARLQK L A + E
Sbjct: 180 LRKTTEDNQELVSRWMAEKAQEANRLNAENEKDSKRRQARLQK---ELAEAAKEPLSFEH 236
Query: 239 DSSINIMSD 247
D I +++D
Sbjct: 237 DDDIEVLND 245
>sp|Q5RD60|CACO1_PONAB Calcium-binding and coiled-coil domain-containing protein 1
OS=Pongo abelii GN=CALCOCO1 PE=2 SV=1
Length = 691
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIA 192
VL QL E Q + N L KLQLE GQ + L SR++ELE L ++E +
Sbjct: 147 TVLQNQLDESQQERNDLMQLKLQLE------GQVTE-LRSRVQELERALATARQEHTELM 199
Query: 193 SKIKKFVKAHNRHSQMQDDLKRSQ 216
+ K ++H ++ +D L R Q
Sbjct: 200 EQYKGISRSHGEITEERDILSRQQ 223
>sp|Q9P1Z2|CACO1_HUMAN Calcium-binding and coiled-coil domain-containing protein 1 OS=Homo
sapiens GN=CALCOCO1 PE=1 SV=2
Length = 691
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIA 192
VL QL E Q + N L KLQLE GQ + L SR++ELE L ++E +
Sbjct: 147 TVLQNQLDESQQERNDLMQLKLQLE------GQVTE-LRSRVQELERALATARQEHTELM 199
Query: 193 SKIKKFVKAHNRHSQMQDDLKRSQ 216
+ K ++H ++ +D L R Q
Sbjct: 200 EQYKGISRSHGEITEERDILSRQQ 223
>sp|Q5B1T9|ATG2_EMENI Autophagy-related protein 2 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg2
PE=3 SV=2
Length = 2090
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 246 SDEETTNYHLVDPQNEKQTIPSPNKKKLHVDRDTTNGFVPEANLTKDGGRVAESVHLKEV 305
S E+T+ H + P + +K LH+D+ T ++P TKD ++E + +
Sbjct: 613 SYSESTDKHSIQPSPDVNETTKVSKSFLHIDKVTI--WIPSTKPTKDHQDISEPLDARSA 670
Query: 306 SWWNQHPTNHGSVADESKLKGKNVSTSWFSAQAKNVRSANALALPSTGIAAH-------V 358
+ T H + S+++ ++VS S + + R + LAL T ++ +
Sbjct: 671 GGSFKDSTTH---LEASQVRERSVSFSKPPSSLRTRRDSTELALAGTDTKSYTKYGLGSL 727
Query: 359 NDEEIEVEVEQIE 371
N I VE+ IE
Sbjct: 728 NSTNISVEISCIE 740
>sp|Q8C0J2|A16L1_MOUSE Autophagy-related protein 16-1 OS=Mus musculus GN=Atg16l1 PE=1 SV=1
Length = 607
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 144 LDINVLEDR-KLQ-LETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASK--IKKFV 199
L+ N L+ R KLQ LE + E D L LE +L+K EE++ + ++ +K
Sbjct: 141 LETNCLDLRTKLQDLEVANQTLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQ 200
Query: 200 KAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSINIMSDEETTNYHLVDP 258
+A+ +++ + D +R QARLQK L A + E+D I ++ DE + + P
Sbjct: 201 EANRLNAENEKDSRRRQARLQK---ELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSP 256
>sp|Q5RAC9|A16L1_PONAB Autophagy-related protein 16-1 OS=Pongo abelii GN=ATG16L1 PE=2 SV=1
Length = 607
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 122 KERKFTPSDSKVV-LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQ 180
K+R+ +++K+ L+ + +++ + L + LE + E D L LE +
Sbjct: 120 KDREMQMNEAKIAECLQTISDLETECLDLRTKLCDLERANQTLKDEYDALQITFTALEGK 179
Query: 181 LQKEKEESKRIASK--IKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEE 238
L+K EE++ + ++ +K +A+ +++ + D +R QARLQK L A + E+
Sbjct: 180 LRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQK---ELAEAAKEPLPVEQ 236
Query: 239 DSSINIMSDEETTNYHLVDP 258
D I ++ DE + + P
Sbjct: 237 DDDIEVIVDETSDHTEETSP 256
>sp|Q676U5|A16L1_HUMAN Autophagy-related protein 16-1 OS=Homo sapiens GN=ATG16L1 PE=1 SV=2
Length = 607
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Query: 122 KERKFTPSDSKVV-LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQ 180
K+R+ +++K+ L+ + +++ + L + LE + E D L LE +
Sbjct: 120 KDREMQMNEAKIAECLQTISDLETECLDLRTKLCDLERANQTLKDEYDALQITFTALEGK 179
Query: 181 LQKEKEESKRIASK--IKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEE 238
L+K EE++ + ++ +K +A+ +++ + D +R QARLQK L A + E+
Sbjct: 180 LRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQK---ELAEAAKEPLPVEQ 236
Query: 239 DSSINIMSDEETTNYHLVDP 258
D I ++ DE + + P
Sbjct: 237 DDDIEVIVDETSDHTEETSP 256
>sp|Q8VDD5|MYH9_MOUSE Myosin-9 OS=Mus musculus GN=Myh9 PE=1 SV=4
Length = 1960
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRI 191
KV +LK+++ D ++ED+ +L +E +L R+ E T L +E+E+SK +
Sbjct: 966 KVTTEAKLKKLEEDQIIMEDQNCKL-------AKEKKLLEDRVAEFTTNLMEEEEKSKSL 1018
Query: 192 ASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSINI 244
A K N+H M DL+ R +K L K+ G+ D S I
Sbjct: 1019 A-------KLKNKHEAMITDLEERLRREEKQRQELEKTRRKLEGDSTDLSDQI 1064
>sp|Q62812|MYH9_RAT Myosin-9 OS=Rattus norvegicus GN=Myh9 PE=1 SV=3
Length = 1961
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRI 191
KV +LK+++ D ++ED+ +L +E +L R+ E T L +E+E+SK +
Sbjct: 966 KVTTEAKLKKLEEDQIIMEDQNCKL-------AKEKKLLEDRVAEFTTDLMEEEEKSKSL 1018
Query: 192 ASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSINI 244
A K N+H M DL+ R +K L K+ G+ D S I
Sbjct: 1019 A-------KLKNKHEAMITDLEERLRREEKQRQELEKTRRKLEGDSTDLSDQI 1064
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,486,589
Number of Sequences: 539616
Number of extensions: 7180688
Number of successful extensions: 31326
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 951
Number of HSP's that attempted gapping in prelim test: 27921
Number of HSP's gapped (non-prelim): 3809
length of query: 408
length of database: 191,569,459
effective HSP length: 120
effective length of query: 288
effective length of database: 126,815,539
effective search space: 36522875232
effective search space used: 36522875232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)