Query 042473
Match_columns 408
No_of_seqs 121 out of 176
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 06:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00642 zf-CCCH: Zinc finger 98.4 7.4E-08 1.6E-12 63.9 0.4 25 7-31 1-27 (27)
2 KOG1677 CCCH-type Zn-finger pr 98.2 8.1E-07 1.8E-11 85.2 2.1 38 2-39 170-209 (332)
3 smart00356 ZnF_C3H1 zinc finge 97.8 8.6E-06 1.9E-10 52.1 1.4 26 6-31 1-27 (27)
4 KOG1677 CCCH-type Zn-finger pr 97.6 2.3E-05 5E-10 75.3 2.3 36 2-37 125-163 (332)
5 COG5063 CTH1 CCCH-type Zn-fing 97.0 0.00029 6.3E-09 70.8 1.4 37 4-40 269-307 (351)
6 KOG1595 CCCH-type Zn-finger pr 93.9 0.019 4E-07 61.2 0.5 35 3-39 265-299 (528)
7 COG5063 CTH1 CCCH-type Zn-fing 93.8 0.028 6.1E-07 57.0 1.5 36 2-37 221-266 (351)
8 KOG1763 Uncharacterized conser 93.2 0.038 8.2E-07 55.9 1.3 42 6-47 89-133 (343)
9 PF11559 ADIP: Afadin- and alp 93.0 3.4 7.3E-05 36.3 13.0 91 129-225 51-148 (151)
10 PRK11637 AmiB activator; Provi 92.8 1.8 3.9E-05 44.0 12.5 50 134-183 44-93 (428)
11 PF11559 ADIP: Afadin- and alp 92.3 3.3 7.1E-05 36.4 11.9 96 133-231 38-136 (151)
12 COG5252 Uncharacterized conser 92.3 0.047 1E-06 54.0 0.5 42 6-47 82-126 (299)
13 PF11932 DUF3450: Protein of u 91.9 1.8 3.9E-05 41.1 10.5 54 130-183 49-102 (251)
14 KOG2202 U2 snRNP splicing fact 91.8 0.25 5.5E-06 48.9 4.8 29 3-31 146-175 (260)
15 KOG1595 CCCH-type Zn-finger pr 91.2 0.22 4.7E-06 53.4 4.0 36 6-41 233-269 (528)
16 PF04156 IncA: IncA protein; 91.2 6.3 0.00014 35.4 12.8 67 133-199 84-150 (191)
17 PRK11637 AmiB activator; Provi 91.2 3 6.6E-05 42.4 12.0 52 132-183 49-100 (428)
18 PF07106 TBPIP: Tat binding pr 91.2 2.2 4.8E-05 38.2 9.8 88 136-225 71-160 (169)
19 TIGR00998 8a0101 efflux pump m 91.0 1.8 3.9E-05 41.4 9.6 100 118-217 61-167 (334)
20 PHA02562 46 endonuclease subun 90.8 2.7 5.8E-05 43.1 11.2 87 132-225 301-394 (562)
21 PF07888 CALCOCO1: Calcium bin 90.5 3.7 8.1E-05 44.5 12.4 88 133-227 139-230 (546)
22 PF15619 Lebercilin: Ciliary p 89.9 6.4 0.00014 37.2 12.0 94 133-226 85-187 (194)
23 PRK10476 multidrug resistance 89.6 2.8 6.1E-05 40.9 9.9 102 119-220 68-176 (346)
24 PF14608 zf-CCCH_2: Zinc finge 88.6 0.24 5.2E-06 31.0 1.2 18 11-30 1-19 (19)
25 KOG0982 Centrosomal protein Nu 88.6 6.9 0.00015 41.9 12.3 89 139-227 306-394 (502)
26 PF04508 Pox_A_type_inc: Viral 88.4 0.49 1.1E-05 31.6 2.6 19 165-183 1-19 (23)
27 KOG0995 Centromere-associated 87.3 8.6 0.00019 42.1 12.4 94 132-225 427-532 (581)
28 KOG2185 Predicted RNA-processi 87.3 0.25 5.5E-06 51.9 1.1 31 9-39 140-175 (486)
29 PF04156 IncA: IncA protein; 87.2 18 0.0004 32.5 12.7 68 138-205 82-149 (191)
30 KOG2494 C3H1-type Zn-finger pr 87.1 0.43 9.3E-06 48.7 2.5 27 9-35 37-65 (331)
31 PF04111 APG6: Autophagy prote 86.2 9.5 0.00021 38.2 11.3 85 144-228 43-131 (314)
32 PF09304 Cortex-I_coil: Cortex 86.1 20 0.00043 31.9 11.8 76 131-211 10-94 (107)
33 PRK09039 hypothetical protein; 85.9 7.4 0.00016 39.3 10.5 58 132-189 76-133 (343)
34 PF00038 Filament: Intermediat 85.1 11 0.00025 36.1 10.9 79 127-212 44-122 (312)
35 PF12718 Tropomyosin_1: Tropom 85.1 27 0.00058 31.4 12.6 80 147-226 17-103 (143)
36 TIGR01837 PHA_granule_1 poly(h 84.5 3 6.5E-05 36.3 6.1 68 118-185 29-116 (118)
37 PRK02224 chromosome segregatio 84.2 18 0.0004 39.6 13.2 22 139-160 208-229 (880)
38 PF07888 CALCOCO1: Calcium bin 84.2 18 0.00039 39.5 13.0 40 157-196 198-237 (546)
39 KOG1040 Polyadenylation factor 83.9 0.44 9.5E-06 48.3 0.9 33 6-39 74-107 (325)
40 PF07106 TBPIP: Tat binding pr 83.7 3.7 8E-05 36.8 6.6 55 132-186 81-137 (169)
41 TIGR02168 SMC_prok_B chromosom 83.5 19 0.00042 39.4 13.0 10 209-218 914-923 (1179)
42 TIGR01843 type_I_hlyD type I s 83.4 26 0.00056 34.2 12.7 90 135-224 128-224 (423)
43 PF11932 DUF3450: Protein of u 83.4 13 0.00027 35.4 10.4 75 133-207 45-119 (251)
44 PF10146 zf-C4H2: Zinc finger- 83.4 3.6 7.8E-05 39.9 6.8 76 139-221 34-109 (230)
45 PF08317 Spc7: Spc7 kinetochor 82.8 6.5 0.00014 39.1 8.4 27 208-234 274-300 (325)
46 TIGR03007 pepcterm_ChnLen poly 82.2 19 0.00042 36.8 11.8 67 191-258 343-411 (498)
47 KOG2494 C3H1-type Zn-finger pr 82.2 0.56 1.2E-05 47.9 0.8 27 10-36 72-98 (331)
48 PF05266 DUF724: Protein of un 82.0 26 0.00057 33.1 11.7 92 131-223 91-186 (190)
49 PRK03918 chromosome segregatio 81.8 22 0.00047 38.8 12.6 9 221-229 747-755 (880)
50 PRK10884 SH3 domain-containing 81.7 20 0.00043 34.3 10.9 83 134-229 90-172 (206)
51 TIGR02169 SMC_prok_A chromosom 81.1 27 0.00059 38.6 13.2 7 10-16 561-567 (1164)
52 PF10186 Atg14: UV radiation r 80.2 35 0.00077 31.9 11.9 38 146-183 65-102 (302)
53 TIGR01843 type_I_hlyD type I s 80.0 25 0.00055 34.3 11.3 48 112-161 58-105 (423)
54 PF10046 BLOC1_2: Biogenesis o 79.6 11 0.00024 31.7 7.6 60 138-197 39-98 (99)
55 PRK12704 phosphodiesterase; Pr 79.4 22 0.00048 38.1 11.5 18 220-237 187-204 (520)
56 PHA02562 46 endonuclease subun 79.4 27 0.00058 36.0 11.7 17 131-147 307-323 (562)
57 TIGR03319 YmdA_YtgF conserved 79.2 22 0.00048 38.0 11.4 17 273-289 257-273 (514)
58 KOG2010 Double stranded RNA bi 78.6 25 0.00055 36.8 11.1 107 134-247 123-229 (405)
59 PF02994 Transposase_22: L1 tr 77.4 5.9 0.00013 40.4 6.4 66 135-200 103-172 (370)
60 PF05667 DUF812: Protein of un 77.4 33 0.00072 37.6 12.2 92 136-227 320-418 (594)
61 PF11570 E2R135: Coiled-coil r 77.3 46 0.00099 30.7 11.2 87 135-221 13-116 (136)
62 COG1579 Zn-ribbon protein, pos 77.2 24 0.00051 34.9 10.1 54 133-186 27-80 (239)
63 PF05278 PEARLI-4: Arabidopsis 76.8 17 0.00036 36.6 9.1 38 185-222 224-261 (269)
64 TIGR03185 DNA_S_dndD DNA sulfu 76.8 33 0.00071 37.1 12.0 26 170-195 433-458 (650)
65 PF10473 CENP-F_leu_zip: Leuci 76.7 30 0.00065 31.6 10.0 48 136-183 65-112 (140)
66 TIGR03017 EpsF chain length de 76.7 57 0.0012 32.8 12.9 80 170-259 316-395 (444)
67 KOG0243 Kinesin-like protein [ 76.7 37 0.00081 39.8 12.8 67 131-197 442-508 (1041)
68 PF10146 zf-C4H2: Zinc finger- 76.5 24 0.00052 34.3 9.9 33 131-163 47-79 (230)
69 PRK15396 murein lipoprotein; P 76.0 15 0.00032 30.7 7.2 48 166-223 26-73 (78)
70 COG1579 Zn-ribbon protein, pos 76.0 58 0.0013 32.2 12.4 71 132-202 54-133 (239)
71 cd07664 BAR_SNX2 The Bin/Amphi 75.6 60 0.0013 31.5 12.3 92 131-222 30-152 (234)
72 PF08581 Tup_N: Tup N-terminal 75.2 35 0.00075 28.4 9.2 52 135-186 2-60 (79)
73 PF08614 ATG16: Autophagy prot 74.7 18 0.00038 33.4 8.2 90 133-222 70-170 (194)
74 PF06160 EzrA: Septation ring 74.7 35 0.00076 36.6 11.4 94 133-226 104-210 (560)
75 PRK02119 hypothetical protein; 74.5 29 0.00063 28.2 8.4 54 165-228 2-55 (73)
76 COG3937 Uncharacterized conser 74.4 7.6 0.00017 34.4 5.4 70 118-189 31-107 (108)
77 COG1196 Smc Chromosome segrega 74.2 34 0.00074 39.6 11.9 91 135-225 388-496 (1163)
78 PF04728 LPP: Lipoprotein leuc 74.2 21 0.00046 28.4 7.3 47 167-223 5-51 (56)
79 KOG0243 Kinesin-like protein [ 73.9 45 0.00097 39.2 12.6 92 131-226 456-555 (1041)
80 PRK03598 putative efflux pump 73.8 21 0.00046 34.6 8.8 102 119-222 63-171 (331)
81 smart00787 Spc7 Spc7 kinetocho 73.7 16 0.00035 36.8 8.2 24 210-233 271-294 (312)
82 TIGR03185 DNA_S_dndD DNA sulfu 73.6 45 0.00098 36.1 12.0 32 152-183 429-460 (650)
83 PRK10132 hypothetical protein; 73.5 35 0.00077 29.8 9.2 70 130-202 5-85 (108)
84 PF10392 COG5: Golgi transport 73.2 64 0.0014 28.2 13.0 100 127-226 23-132 (132)
85 COG1196 Smc Chromosome segrega 73.1 51 0.0011 38.3 12.9 54 174-227 774-831 (1163)
86 PF10174 Cast: RIM-binding pro 72.4 44 0.00095 38.0 11.9 96 132-227 467-579 (775)
87 TIGR01000 bacteriocin_acc bact 71.8 60 0.0013 33.5 11.9 33 200-232 288-320 (457)
88 COG4942 Membrane-bound metallo 71.7 18 0.00039 38.4 8.2 91 136-237 37-131 (420)
89 smart00787 Spc7 Spc7 kinetocho 71.5 77 0.0017 32.1 12.4 94 130-224 144-246 (312)
90 PF08317 Spc7: Spc7 kinetochor 71.3 48 0.001 33.1 10.8 59 133-191 212-273 (325)
91 PRK09841 cryptic autophosphory 71.0 70 0.0015 35.2 12.9 26 127-152 264-289 (726)
92 PF05597 Phasin: Poly(hydroxya 70.4 8.9 0.00019 34.5 5.0 64 120-183 44-127 (132)
93 KOG0161 Myosin class II heavy 70.0 61 0.0013 40.4 13.0 53 146-198 896-948 (1930)
94 cd07599 BAR_Rvs167p The Bin/Am 70.0 87 0.0019 29.1 11.6 79 152-230 90-176 (216)
95 PRK15178 Vi polysaccharide exp 69.8 43 0.00093 35.6 10.6 79 160-247 309-393 (434)
96 KOG0161 Myosin class II heavy 69.7 54 0.0012 40.8 12.5 64 134-197 1045-1108(1930)
97 PRK10246 exonuclease subunit S 69.6 64 0.0014 37.2 12.6 99 128-226 775-886 (1047)
98 COG5185 HEC1 Protein involved 69.5 44 0.00096 36.6 10.6 65 133-201 260-331 (622)
99 PF06008 Laminin_I: Laminin Do 68.9 75 0.0016 30.5 11.2 64 132-195 47-110 (264)
100 PF03962 Mnd1: Mnd1 family; I 68.9 73 0.0016 29.9 10.9 98 128-226 60-158 (188)
101 KOG0250 DNA repair protein RAD 68.7 44 0.00096 39.3 11.1 74 129-202 681-778 (1074)
102 PRK00106 hypothetical protein; 68.5 60 0.0013 35.4 11.5 18 272-289 277-294 (535)
103 PF09726 Macoilin: Transmembra 68.4 67 0.0015 36.0 12.1 68 128-195 416-497 (697)
104 KOG0250 DNA repair protein RAD 68.1 60 0.0013 38.3 11.9 84 139-222 283-370 (1074)
105 PF08172 CASP_C: CASP C termin 68.0 17 0.00037 35.6 6.8 53 150-206 75-133 (248)
106 PF00261 Tropomyosin: Tropomyo 67.6 1.2E+02 0.0025 29.0 13.3 46 136-181 140-185 (237)
107 cd00089 HR1 Protein kinase C-r 67.6 34 0.00073 26.9 7.2 57 168-228 5-67 (72)
108 PF09726 Macoilin: Transmembra 66.9 1.4E+02 0.0029 33.7 14.1 63 137-202 418-483 (697)
109 TIGR00606 rad50 rad50. This fa 66.6 68 0.0015 37.7 12.3 100 130-229 709-818 (1311)
110 PF04111 APG6: Autophagy prote 66.5 1.2E+02 0.0026 30.5 12.5 88 136-223 42-133 (314)
111 PF05266 DUF724: Protein of un 66.3 33 0.00071 32.5 8.1 60 131-190 125-184 (190)
112 PF12777 MT: Microtubule-bindi 66.0 48 0.001 33.3 9.6 86 133-227 231-316 (344)
113 PRK15136 multidrug efflux syst 65.7 54 0.0012 33.2 10.1 100 113-221 77-183 (390)
114 KOG4603 TBP-1 interacting prot 65.7 31 0.00068 33.3 7.8 67 135-201 77-145 (201)
115 PF10650 zf-C3H1: Putative zin 65.7 3.1 6.7E-05 27.9 0.9 19 11-29 2-21 (23)
116 PF09755 DUF2046: Uncharacteri 65.7 62 0.0013 33.3 10.4 36 144-179 113-149 (310)
117 TIGR01005 eps_transp_fam exopo 65.7 82 0.0018 34.4 12.0 78 172-259 352-429 (754)
118 PF10234 Cluap1: Clusterin-ass 64.9 46 0.001 33.4 9.2 55 155-222 162-216 (267)
119 KOG0933 Structural maintenance 64.8 43 0.00094 39.4 10.0 91 134-224 868-979 (1174)
120 PRK04778 septation ring format 64.6 75 0.0016 34.1 11.3 88 132-226 107-214 (569)
121 PRK01156 chromosome segregatio 64.5 96 0.0021 34.5 12.4 28 168-195 632-659 (895)
122 TIGR00606 rad50 rad50. This fa 64.4 84 0.0018 37.0 12.5 85 135-219 187-271 (1311)
123 PF10186 Atg14: UV radiation r 63.9 1.3E+02 0.0028 28.2 13.1 45 137-181 63-107 (302)
124 cd07601 BAR_APPL The Bin/Amphi 63.8 22 0.00047 34.4 6.5 44 184-227 7-50 (215)
125 KOG0933 Structural maintenance 63.8 81 0.0018 37.3 11.8 90 135-224 263-371 (1174)
126 KOG1853 LIS1-interacting prote 63.7 95 0.0021 31.9 11.1 77 133-216 48-128 (333)
127 PF09738 DUF2051: Double stran 63.6 1.8E+02 0.0038 29.7 13.5 73 137-219 91-163 (302)
128 PRK01156 chromosome segregatio 63.3 1.1E+02 0.0023 34.2 12.4 16 24-39 18-33 (895)
129 KOG0995 Centromere-associated 63.3 1.3E+02 0.0029 33.4 12.9 97 137-236 301-400 (581)
130 cd07596 BAR_SNX The Bin/Amphip 63.1 1.1E+02 0.0023 27.1 11.4 36 165-200 145-180 (218)
131 TIGR03794 NHPM_micro_HlyD NHPM 63.0 80 0.0017 32.0 10.7 85 113-199 74-166 (421)
132 PF12072 DUF3552: Domain of un 62.6 97 0.0021 28.9 10.4 69 130-198 64-132 (201)
133 KOG1029 Endocytic adaptor prot 62.6 60 0.0013 37.6 10.4 34 130-163 507-540 (1118)
134 PF01920 Prefoldin_2: Prefoldi 62.5 80 0.0017 25.4 9.7 30 133-162 8-37 (106)
135 PF02388 FemAB: FemAB family; 61.4 38 0.00082 34.7 8.1 16 168-183 252-267 (406)
136 KOG0979 Structural maintenance 61.0 65 0.0014 37.9 10.5 79 147-228 251-329 (1072)
137 KOG1029 Endocytic adaptor prot 60.9 43 0.00092 38.7 8.9 41 148-188 434-474 (1118)
138 TIGR02132 phaR_Bmeg polyhydrox 60.7 62 0.0014 31.3 8.8 69 147-215 82-150 (189)
139 KOG4809 Rab6 GTPase-interactin 60.5 1.3E+02 0.0028 33.6 12.1 87 138-227 339-452 (654)
140 PF00038 Filament: Intermediat 60.3 84 0.0018 30.2 9.9 23 167-189 257-279 (312)
141 COG4026 Uncharacterized protei 60.1 15 0.00033 36.8 4.9 92 127-232 129-220 (290)
142 KOG0976 Rho/Rac1-interacting s 60.0 57 0.0012 38.0 9.6 87 127-227 348-434 (1265)
143 cd07651 F-BAR_PombeCdc15_like 59.7 82 0.0018 29.6 9.5 30 196-225 150-179 (236)
144 PF02403 Seryl_tRNA_N: Seryl-t 59.4 48 0.001 27.5 7.1 20 166-185 75-94 (108)
145 KOG4593 Mitotic checkpoint pro 59.3 1.3E+02 0.0029 34.1 12.2 95 134-228 123-222 (716)
146 KOG0996 Structural maintenance 59.0 1.5E+02 0.0032 35.8 12.9 46 137-182 799-844 (1293)
147 PF04849 HAP1_N: HAP1 N-termin 58.9 1.4E+02 0.0031 30.7 11.5 65 132-196 162-237 (306)
148 PF06005 DUF904: Protein of un 58.8 1E+02 0.0022 25.3 9.2 64 137-200 4-67 (72)
149 TIGR01010 BexC_CtrB_KpsE polys 58.7 62 0.0014 32.1 8.9 86 168-259 245-331 (362)
150 COG3883 Uncharacterized protei 58.5 71 0.0015 32.2 9.2 76 139-218 33-108 (265)
151 PF03114 BAR: BAR domain; Int 58.5 47 0.001 29.0 7.2 56 170-228 24-79 (229)
152 PRK10947 global DNA-binding tr 58.3 41 0.00089 30.5 6.9 57 134-203 13-69 (135)
153 PF05957 DUF883: Bacterial pro 58.3 1E+02 0.0022 25.2 8.9 23 133-155 1-23 (94)
154 PRK11519 tyrosine kinase; Prov 58.3 1.5E+02 0.0033 32.6 12.5 26 127-152 264-289 (719)
155 PF07851 TMPIT: TMPIT-like pro 57.8 88 0.0019 32.3 10.0 48 179-226 39-91 (330)
156 PF12777 MT: Microtubule-bindi 57.6 2E+02 0.0044 28.9 12.3 84 137-222 8-94 (344)
157 PRK10884 SH3 domain-containing 57.1 67 0.0015 30.8 8.5 51 133-183 96-150 (206)
158 TIGR01554 major_cap_HK97 phage 56.9 88 0.0019 31.3 9.7 20 134-153 3-22 (378)
159 COG3883 Uncharacterized protei 56.9 1.3E+02 0.0028 30.4 10.7 56 131-186 39-94 (265)
160 COG3334 Uncharacterized conser 56.8 54 0.0012 31.6 7.8 90 147-247 66-166 (192)
161 PF12128 DUF3584: Protein of u 56.6 1.7E+02 0.0037 34.4 13.1 43 128-170 598-640 (1201)
162 cd07599 BAR_Rvs167p The Bin/Am 56.3 41 0.00088 31.2 6.8 47 166-212 3-49 (216)
163 TIGR02971 heterocyst_DevB ABC 56.1 1E+02 0.0023 29.7 9.7 57 164-220 96-159 (327)
164 PF14257 DUF4349: Domain of un 55.7 55 0.0012 31.2 7.7 37 194-230 160-196 (262)
165 PF13805 Pil1: Eisosome compon 55.6 1.5E+02 0.0033 30.0 10.9 80 139-218 98-180 (271)
166 PF14712 Snapin_Pallidin: Snap 55.1 1.1E+02 0.0024 24.7 9.4 30 193-222 61-90 (92)
167 PF05667 DUF812: Protein of un 55.0 74 0.0016 35.0 9.4 75 152-226 315-389 (594)
168 PF03148 Tektin: Tektin family 54.9 2.6E+02 0.0056 28.8 13.8 70 130-199 57-139 (384)
169 smart00502 BBC B-Box C-termina 54.6 88 0.0019 25.2 7.7 26 133-158 3-28 (127)
170 PF05529 Bap31: B-cell recepto 54.1 94 0.002 28.4 8.7 66 137-202 125-191 (192)
171 cd07627 BAR_Vps5p The Bin/Amph 54.1 1.9E+02 0.0042 27.1 12.6 92 132-223 13-135 (216)
172 PF06008 Laminin_I: Laminin Do 54.1 2.1E+02 0.0045 27.5 12.0 94 133-226 90-201 (264)
173 KOG0457 Histone acetyltransfer 53.8 45 0.00099 35.7 7.3 81 117-211 189-272 (438)
174 PF05531 NPV_P10: Nucleopolyhe 53.7 72 0.0016 26.7 7.0 46 138-183 5-53 (75)
175 KOG0804 Cytoplasmic Zn-finger 53.5 97 0.0021 33.7 9.7 65 135-199 330-395 (493)
176 PF05911 DUF869: Plant protein 53.5 51 0.0011 37.4 8.1 33 166-198 674-706 (769)
177 PF13815 Dzip-like_N: Iguana/D 53.4 50 0.0011 28.4 6.4 41 148-188 77-117 (118)
178 PF13094 CENP-Q: CENP-Q, a CEN 52.8 61 0.0013 28.9 7.1 48 140-187 16-63 (160)
179 KOG1039 Predicted E3 ubiquitin 52.3 5.7 0.00012 40.8 0.6 23 10-32 9-32 (344)
180 PF09730 BicD: Microtubule-ass 52.2 2E+02 0.0042 32.8 12.2 89 137-228 366-458 (717)
181 PF10174 Cast: RIM-binding pro 51.9 1.7E+02 0.0038 33.4 11.9 93 133-225 241-344 (775)
182 PF01576 Myosin_tail_1: Myosin 51.9 4.8 0.0001 45.2 0.0 61 165-225 743-803 (859)
183 PF03148 Tektin: Tektin family 51.8 94 0.002 31.9 9.1 31 152-182 259-289 (384)
184 PF11500 Cut12: Spindle pole b 51.7 1.2E+02 0.0026 28.4 8.9 52 132-183 72-123 (152)
185 PF13851 GAS: Growth-arrest sp 51.6 2E+02 0.0043 27.2 10.6 54 147-200 30-83 (201)
186 cd00179 SynN Syntaxin N-termin 51.5 1.6E+02 0.0034 25.3 11.1 21 195-215 94-114 (151)
187 PRK11281 hypothetical protein; 51.2 80 0.0017 37.3 9.4 59 168-229 124-182 (1113)
188 TIGR03319 YmdA_YtgF conserved 51.0 2E+02 0.0044 31.0 11.7 59 143-201 75-133 (514)
189 cd07307 BAR The Bin/Amphiphysi 50.5 1.5E+02 0.0033 24.8 11.7 61 172-232 94-157 (194)
190 PF07889 DUF1664: Protein of u 50.4 1.9E+02 0.0042 26.1 10.5 80 127-227 40-120 (126)
191 KOG1962 B-cell receptor-associ 50.4 91 0.002 30.6 8.3 51 156-206 149-199 (216)
192 PF15188 CCDC-167: Coiled-coil 50.2 1.2E+02 0.0027 25.8 8.1 73 131-203 6-82 (85)
193 KOG0804 Cytoplasmic Zn-finger 50.2 1.2E+02 0.0026 33.1 9.7 26 167-192 384-409 (493)
194 PRK05431 seryl-tRNA synthetase 49.9 2.5E+02 0.0054 29.4 11.9 21 209-229 79-99 (425)
195 TIGR00998 8a0101 efflux pump m 49.8 2.1E+02 0.0046 27.5 10.7 19 208-226 184-202 (334)
196 PRK04325 hypothetical protein; 49.8 83 0.0018 25.6 6.8 52 167-228 4-55 (74)
197 KOG0971 Microtubule-associated 49.8 1.1E+02 0.0024 36.2 9.8 89 131-233 949-1038(1243)
198 PF05377 FlaC_arch: Flagella a 49.7 59 0.0013 25.9 5.7 41 165-205 7-47 (55)
199 PRK04863 mukB cell division pr 49.6 1.6E+02 0.0035 35.9 11.7 24 135-158 312-335 (1486)
200 PF11802 CENP-K: Centromere-as 49.3 1.8E+02 0.004 29.5 10.4 52 132-183 98-149 (268)
201 PF15294 Leu_zip: Leucine zipp 48.8 1.9E+02 0.0041 29.4 10.4 94 132-225 141-251 (278)
202 PF13094 CENP-Q: CENP-Q, a CEN 48.7 1E+02 0.0022 27.5 7.8 55 129-183 26-80 (160)
203 PF02185 HR1: Hr1 repeat; Int 48.7 1.2E+02 0.0026 23.7 7.3 52 173-228 2-58 (70)
204 PRK13182 racA polar chromosome 48.6 67 0.0014 30.1 6.9 54 130-183 85-143 (175)
205 TIGR02680 conserved hypothetic 48.2 2.3E+02 0.0051 33.9 12.6 30 197-226 355-384 (1353)
206 COG5084 YTH1 Cleavage and poly 48.2 12 0.00027 37.7 2.2 35 6-40 101-138 (285)
207 PF10779 XhlA: Haemolysin XhlA 48.2 80 0.0017 25.1 6.3 53 134-200 3-55 (71)
208 PRK09039 hypothetical protein; 48.0 3.2E+02 0.0069 27.9 12.4 48 135-182 44-91 (343)
209 PF00769 ERM: Ezrin/radixin/mo 48.0 2.3E+02 0.005 27.6 10.7 14 133-146 8-21 (246)
210 KOG0979 Structural maintenance 47.9 1.2E+02 0.0027 35.8 10.0 39 165-203 643-681 (1072)
211 KOG2273 Membrane coat complex 47.9 2.5E+02 0.0053 29.4 11.5 70 134-203 384-462 (503)
212 TIGR00634 recN DNA repair prot 47.7 1.6E+02 0.0035 31.4 10.4 12 211-222 354-365 (563)
213 PF14257 DUF4349: Domain of un 47.6 98 0.0021 29.5 8.0 57 169-226 129-185 (262)
214 TIGR02680 conserved hypothetic 47.4 2.6E+02 0.0055 33.6 12.8 85 135-219 880-965 (1353)
215 PRK10328 DNA binding protein, 47.3 69 0.0015 29.0 6.5 57 134-203 13-69 (134)
216 PRK11519 tyrosine kinase; Prov 47.2 1.4E+02 0.003 33.0 10.0 19 240-259 405-423 (719)
217 KOG0996 Structural maintenance 47.1 2.4E+02 0.0051 34.2 12.1 46 185-230 379-425 (1293)
218 PRK09343 prefoldin subunit bet 47.0 2E+02 0.0043 25.2 10.2 85 136-226 13-115 (121)
219 PF09730 BicD: Microtubule-ass 46.9 2.8E+02 0.0061 31.6 12.4 55 127-181 262-316 (717)
220 COG5152 Uncharacterized conser 46.8 7.5 0.00016 38.3 0.4 28 7-34 139-168 (259)
221 cd07623 BAR_SNX1_2 The Bin/Amp 46.7 2.6E+02 0.0056 26.5 12.5 93 131-223 20-143 (224)
222 cd07591 BAR_Rvs161p The Bin/Am 46.1 2.8E+02 0.006 26.6 11.7 74 157-230 94-171 (224)
223 PF12718 Tropomyosin_1: Tropom 46.1 2.3E+02 0.0049 25.6 12.4 65 134-198 39-106 (143)
224 cd07672 F-BAR_PSTPIP2 The F-BA 45.7 1.8E+02 0.0039 28.2 9.6 31 196-226 154-184 (240)
225 PF03915 AIP3: Actin interacti 45.4 2.5E+02 0.0055 29.9 11.2 82 131-212 214-300 (424)
226 PRK09343 prefoldin subunit bet 45.4 1.4E+02 0.003 26.1 8.0 47 153-202 69-115 (121)
227 PF11819 DUF3338: Domain of un 45.3 37 0.00079 31.3 4.5 38 144-181 32-69 (138)
228 COG4372 Uncharacterized protei 45.1 1.8E+02 0.0039 31.5 10.0 96 133-228 77-186 (499)
229 PF10234 Cluap1: Clusterin-ass 44.7 2.8E+02 0.0061 28.0 10.9 43 136-178 175-217 (267)
230 PF10805 DUF2730: Protein of u 44.7 71 0.0015 27.4 5.9 44 136-179 48-93 (106)
231 COG3096 MukB Uncharacterized p 44.6 1.4E+02 0.003 35.0 9.5 85 137-227 864-965 (1480)
232 PF15233 SYCE1: Synaptonemal c 44.6 73 0.0016 29.4 6.2 63 142-204 39-107 (134)
233 PF08647 BRE1: BRE1 E3 ubiquit 44.5 1.9E+02 0.0041 24.3 10.5 79 144-222 3-88 (96)
234 PF12761 End3: Actin cytoskele 44.2 29 0.00064 33.5 3.9 32 139-170 162-193 (195)
235 TIGR00414 serS seryl-tRNA synt 44.0 3.5E+02 0.0075 28.3 11.9 7 168-174 54-60 (418)
236 PF01166 TSC22: TSC-22/dip/bun 43.8 47 0.001 26.9 4.4 38 153-193 5-42 (59)
237 PF14282 FlxA: FlxA-like prote 43.7 74 0.0016 27.2 5.9 48 133-183 22-69 (106)
238 KOG4674 Uncharacterized conser 43.6 1.6E+02 0.0035 36.8 10.5 85 130-224 101-185 (1822)
239 PF15272 BBP1_C: Spindle pole 43.6 71 0.0015 30.9 6.3 17 166-182 133-149 (196)
240 KOG3436 60S ribosomal protein 43.5 87 0.0019 28.5 6.5 25 131-155 13-37 (123)
241 PRK12705 hypothetical protein; 43.1 4.6E+02 0.0099 28.7 12.9 55 130-184 63-117 (508)
242 PF13864 Enkurin: Calmodulin-b 43.1 20 0.00044 29.9 2.4 21 132-152 76-96 (98)
243 PRK05431 seryl-tRNA synthetase 42.9 1.1E+02 0.0023 32.0 8.0 20 208-227 85-104 (425)
244 PRK02119 hypothetical protein; 42.7 1.3E+02 0.0028 24.5 6.8 51 146-196 4-54 (73)
245 PF04102 SlyX: SlyX; InterPro 42.3 1.1E+02 0.0024 24.3 6.3 50 170-229 2-51 (69)
246 TIGR01730 RND_mfp RND family e 41.8 1.4E+02 0.0031 28.0 8.0 89 119-228 46-134 (322)
247 COG2433 Uncharacterized conser 41.7 1.9E+02 0.0042 32.6 10.0 95 134-228 419-516 (652)
248 PF10481 CENP-F_N: Cenp-F N-te 41.6 1.2E+02 0.0025 31.3 7.8 63 133-195 98-185 (307)
249 PF15070 GOLGA2L5: Putative go 41.5 3.1E+02 0.0066 30.6 11.5 60 133-192 163-222 (617)
250 PRK10636 putative ABC transpor 41.5 89 0.0019 33.9 7.4 31 197-227 599-629 (638)
251 PRK09174 F0F1 ATP synthase sub 41.5 3.2E+02 0.0069 26.0 11.2 31 131-161 78-108 (204)
252 PRK09841 cryptic autophosphory 41.3 2.1E+02 0.0045 31.7 10.3 20 239-259 404-423 (726)
253 PRK13729 conjugal transfer pil 41.3 48 0.001 35.8 5.4 32 164-195 89-120 (475)
254 PRK04778 septation ring format 41.3 2.6E+02 0.0057 30.1 10.8 14 168-181 379-392 (569)
255 COG4238 Murein lipoprotein [Ce 40.8 1.3E+02 0.0028 25.6 6.6 48 167-224 27-74 (78)
256 TIGR03752 conj_TIGR03752 integ 40.6 3.3E+02 0.0071 29.8 11.3 49 128-183 57-105 (472)
257 PRK13454 F0F1 ATP synthase sub 40.6 3E+02 0.0065 25.4 11.4 23 211-233 139-161 (181)
258 PF14662 CCDC155: Coiled-coil 40.5 1.8E+02 0.0038 28.3 8.5 64 135-198 65-128 (193)
259 cd07649 F-BAR_GAS7 The F-BAR ( 40.0 2.7E+02 0.0058 27.0 9.7 22 135-156 98-119 (233)
260 PF09731 Mitofilin: Mitochondr 40.0 3.9E+02 0.0085 28.4 11.7 43 133-175 247-298 (582)
261 PF13514 AAA_27: AAA domain 39.8 4.6E+02 0.0099 30.5 13.0 95 131-232 890-994 (1111)
262 PF04849 HAP1_N: HAP1 N-termin 39.7 3.6E+02 0.0079 27.8 11.0 50 151-200 213-262 (306)
263 PF09325 Vps5: Vps5 C terminal 39.5 3E+02 0.0065 25.1 12.0 95 130-224 31-156 (236)
264 PF05701 WEMBL: Weak chloropla 39.4 5.1E+02 0.011 27.8 12.6 97 133-229 30-149 (522)
265 PRK12704 phosphodiesterase; Pr 39.1 4.6E+02 0.01 28.4 12.2 73 158-230 96-171 (520)
266 PF14197 Cep57_CLD_2: Centroso 38.6 1.5E+02 0.0032 24.1 6.6 47 135-181 17-63 (69)
267 COG4026 Uncharacterized protei 38.3 2.2E+02 0.0048 28.9 9.0 33 160-192 144-176 (290)
268 TIGR01005 eps_transp_fam exopo 38.2 2.2E+02 0.0048 31.2 9.9 47 138-184 289-335 (754)
269 TIGR03752 conj_TIGR03752 integ 38.2 2.1E+02 0.0046 31.1 9.4 24 133-156 69-92 (472)
270 PLN02678 seryl-tRNA synthetase 38.1 1.4E+02 0.003 31.9 8.1 21 206-226 88-108 (448)
271 PF04912 Dynamitin: Dynamitin 38.1 2.6E+02 0.0056 28.6 9.7 50 172-221 295-350 (388)
272 PF10205 KLRAQ: Predicted coil 38.0 1.4E+02 0.003 26.4 6.7 45 169-216 30-74 (102)
273 PRK04406 hypothetical protein; 37.9 1.7E+02 0.0037 24.0 6.9 50 169-228 8-57 (75)
274 PRK10476 multidrug resistance 37.7 4.1E+02 0.0089 26.1 10.8 20 207-226 187-206 (346)
275 PF05565 Sipho_Gp157: Siphovir 37.2 2.8E+02 0.006 25.3 8.9 52 144-198 22-73 (162)
276 COG3206 GumC Uncharacterized p 37.0 4.7E+02 0.01 27.1 11.5 104 145-252 314-420 (458)
277 PF05701 WEMBL: Weak chloropla 37.0 5.6E+02 0.012 27.5 13.0 94 133-226 133-234 (522)
278 PF05622 HOOK: HOOK protein; 36.9 11 0.00025 41.0 0.0 55 133-187 328-385 (713)
279 TIGR02231 conserved hypothetic 36.9 3.4E+02 0.0073 28.6 10.6 28 131-158 72-99 (525)
280 PRK14150 heat shock protein Gr 36.8 1.7E+02 0.0036 27.8 7.7 31 154-184 23-53 (193)
281 PHA03332 membrane glycoprotein 36.6 1.3E+02 0.0028 36.1 8.0 97 134-236 902-1005(1328)
282 cd07602 BAR_RhoGAP_OPHN1-like 36.5 1.1E+02 0.0024 29.5 6.6 50 182-231 5-54 (207)
283 cd07588 BAR_Amphiphysin The Bi 36.4 4E+02 0.0087 25.7 11.7 90 137-229 68-165 (211)
284 PF12128 DUF3584: Protein of u 36.3 4.2E+02 0.009 31.3 12.1 25 131-155 314-338 (1201)
285 cd07604 BAR_ASAPs The Bin/Amph 36.2 2.1E+02 0.0047 27.5 8.4 47 167-213 4-50 (215)
286 PF15619 Lebercilin: Ciliary p 36.0 2.3E+02 0.005 26.9 8.4 47 173-219 140-187 (194)
287 KOG0977 Nuclear envelope prote 35.7 4.7E+02 0.01 29.1 11.7 46 128-173 83-128 (546)
288 KOG1962 B-cell receptor-associ 35.6 1.1E+02 0.0023 30.2 6.2 48 134-181 162-209 (216)
289 PF13514 AAA_27: AAA domain 35.6 3.5E+02 0.0075 31.5 11.3 26 132-157 745-770 (1111)
290 PTZ00400 DnaK-type molecular c 35.4 2.7E+02 0.0059 30.6 10.0 51 182-237 593-643 (663)
291 PRK00409 recombination and DNA 35.2 4.8E+02 0.01 29.6 12.0 26 159-184 531-556 (782)
292 COG0419 SbcC ATPase involved i 35.2 5.5E+02 0.012 29.2 12.5 19 4-22 34-55 (908)
293 KOG1760 Molecular chaperone Pr 35.0 69 0.0015 29.4 4.6 43 117-159 16-59 (131)
294 PF05103 DivIVA: DivIVA protei 34.8 52 0.0011 27.6 3.7 66 129-194 17-82 (131)
295 PF03233 Cauli_AT: Aphid trans 34.4 2.5E+02 0.0054 26.7 8.3 80 127-214 77-160 (163)
296 COG1382 GimC Prefoldin, chaper 34.4 3.5E+02 0.0076 24.4 8.9 28 135-162 11-38 (119)
297 PF05911 DUF869: Plant protein 34.4 5.9E+02 0.013 29.3 12.6 90 139-228 591-691 (769)
298 PF01484 Col_cuticle_N: Nemato 34.0 78 0.0017 22.9 4.0 27 169-195 23-49 (53)
299 PF04420 CHD5: CHD5-like prote 34.0 1.6E+02 0.0034 26.9 6.8 65 134-200 37-101 (161)
300 KOG1760 Molecular chaperone Pr 33.9 62 0.0013 29.7 4.1 68 161-228 19-102 (131)
301 PRK06975 bifunctional uroporph 33.9 3.3E+02 0.0071 30.2 10.3 18 166-183 379-396 (656)
302 COG5185 HEC1 Protein involved 33.8 5E+02 0.011 29.0 11.4 61 189-252 385-450 (622)
303 PF04124 Dor1: Dor1-like famil 33.8 5E+02 0.011 26.0 11.7 73 131-203 15-91 (338)
304 KOG0978 E3 ubiquitin ligase in 33.5 4.3E+02 0.0092 30.3 11.1 53 168-223 569-621 (698)
305 PF13166 AAA_13: AAA domain 33.3 6.5E+02 0.014 27.1 13.0 30 135-164 320-349 (712)
306 KOG0977 Nuclear envelope prote 33.3 4.8E+02 0.01 29.0 11.3 35 161-195 151-185 (546)
307 KOG1937 Uncharacterized conser 33.3 2.5E+02 0.0054 30.9 9.0 32 84-115 180-212 (521)
308 TIGR00414 serS seryl-tRNA synt 33.2 1.9E+02 0.0041 30.1 8.1 22 135-156 35-56 (418)
309 PF04108 APG17: Autophagy prot 32.9 5.9E+02 0.013 26.5 13.2 37 170-206 309-345 (412)
310 KOG0999 Microtubule-associated 32.4 5.8E+02 0.012 29.1 11.7 92 131-222 44-168 (772)
311 KOG0964 Structural maintenance 32.3 4.4E+02 0.0095 31.7 11.2 114 129-242 264-388 (1200)
312 PF07926 TPR_MLP1_2: TPR/MLP1/ 32.3 3.4E+02 0.0075 23.7 11.6 41 138-178 4-44 (132)
313 PF00769 ERM: Ezrin/radixin/mo 32.3 4.4E+02 0.0096 25.7 9.9 99 135-233 17-133 (246)
314 PF05739 SNARE: SNARE domain; 32.3 2.1E+02 0.0045 21.2 8.4 46 136-181 3-48 (63)
315 PF07111 HCR: Alpha helical co 32.2 5.4E+02 0.012 29.7 11.6 93 135-227 336-439 (739)
316 PF13166 AAA_13: AAA domain 32.1 2.4E+02 0.0052 30.3 8.8 9 23-31 256-264 (712)
317 COG2433 Uncharacterized conser 32.0 8.2E+02 0.018 27.9 12.9 52 145-196 416-467 (652)
318 COG1566 EmrA Multidrug resista 32.0 4.4E+02 0.0096 27.4 10.3 103 106-217 59-172 (352)
319 cd07606 BAR_SFC_plant The Bin/ 31.5 1.1E+02 0.0023 29.3 5.5 47 180-226 2-48 (202)
320 PF11214 Med2: Mediator comple 31.5 3.8E+02 0.0082 23.9 8.7 48 136-186 26-73 (105)
321 smart00498 FH2 Formin Homology 31.5 6.1E+02 0.013 26.3 11.4 45 160-204 319-376 (432)
322 PF02841 GBP_C: Guanylate-bind 31.2 5.2E+02 0.011 25.4 12.3 43 141-186 215-257 (297)
323 KOG0153 Predicted RNA-binding 31.2 26 0.00055 36.8 1.4 23 10-32 162-185 (377)
324 KOG0962 DNA repair protein RAD 31.1 5.5E+02 0.012 31.4 12.0 66 166-231 872-944 (1294)
325 PF09304 Cortex-I_coil: Cortex 31.1 3.9E+02 0.0084 23.9 11.9 72 131-202 3-74 (107)
326 PRK00409 recombination and DNA 31.0 4.3E+02 0.0094 30.0 10.8 6 256-261 637-642 (782)
327 PF04102 SlyX: SlyX; InterPro 30.6 1.4E+02 0.003 23.8 5.2 31 168-198 21-51 (69)
328 KOG1813 Predicted E3 ubiquitin 30.4 19 0.00042 36.9 0.4 29 6-34 183-213 (313)
329 cd07638 BAR_ACAP2 The Bin/Amph 30.3 1.6E+02 0.0035 28.3 6.4 47 180-226 3-49 (200)
330 PF06818 Fez1: Fez1; InterPro 30.1 2.5E+02 0.0054 27.4 7.7 59 133-191 34-106 (202)
331 PF10168 Nup88: Nuclear pore c 30.1 5.2E+02 0.011 29.3 11.2 81 148-228 569-657 (717)
332 COG4477 EzrA Negative regulato 30.0 4.8E+02 0.01 29.2 10.6 91 128-225 102-219 (570)
333 PF09789 DUF2353: Uncharacteri 30.0 3.7E+02 0.0079 27.9 9.3 89 130-227 126-227 (319)
334 PRK05771 V-type ATP synthase s 29.9 1.9E+02 0.0041 31.4 7.7 45 168-212 218-262 (646)
335 KOG4687 Uncharacterized coiled 29.7 3.5E+02 0.0075 28.3 9.0 41 181-221 162-202 (389)
336 cd07623 BAR_SNX1_2 The Bin/Amp 29.7 4.9E+02 0.011 24.6 11.6 67 132-200 118-184 (224)
337 smart00503 SynN Syntaxin N-ter 29.5 3.1E+02 0.0067 22.3 11.3 26 177-202 44-69 (117)
338 PF15195 TMEM210: TMEM210 fami 29.3 27 0.00059 31.0 1.1 12 391-402 104-115 (116)
339 PF04645 DUF603: Protein of un 29.2 2.8E+02 0.006 26.9 7.7 29 174-202 140-173 (181)
340 PF05276 SH3BP5: SH3 domain-bi 29.2 5.5E+02 0.012 25.4 10.0 69 151-226 21-93 (239)
341 PLN02320 seryl-tRNA synthetase 29.2 2.2E+02 0.0047 31.1 7.9 19 208-226 149-167 (502)
342 PF09763 Sec3_C: Exocyst compl 29.0 3.3E+02 0.0073 29.8 9.4 80 134-213 9-92 (701)
343 PF10267 Tmemb_cc2: Predicted 28.6 7.4E+02 0.016 26.4 13.6 28 175-202 247-274 (395)
344 PF09325 Vps5: Vps5 C terminal 28.6 4.6E+02 0.0099 23.9 11.4 65 133-197 131-195 (236)
345 KOG0976 Rho/Rac1-interacting s 28.6 5.7E+02 0.012 30.5 11.1 16 135-150 97-112 (1265)
346 PF09744 Jnk-SapK_ap_N: JNK_SA 28.6 2.9E+02 0.0063 25.7 7.6 65 133-197 46-114 (158)
347 PF02050 FliJ: Flagellar FliJ 28.4 2.9E+02 0.0064 21.7 11.6 27 138-164 13-39 (123)
348 PF13747 DUF4164: Domain of un 28.4 3.1E+02 0.0068 23.1 7.2 14 134-147 5-18 (89)
349 PF06810 Phage_GP20: Phage min 28.2 3E+02 0.0065 25.2 7.6 46 131-187 28-73 (155)
350 PF10212 TTKRSYEDQ: Predicted 28.0 1.9E+02 0.0041 31.8 7.2 35 147-181 444-478 (518)
351 PF04871 Uso1_p115_C: Uso1 / p 28.0 4.5E+02 0.0097 23.6 8.9 18 213-230 101-118 (136)
352 PF10498 IFT57: Intra-flagella 27.9 6.8E+02 0.015 26.1 10.9 38 190-227 267-304 (359)
353 PHA03395 p10 fibrous body prot 27.9 2.8E+02 0.006 24.1 6.8 45 139-183 6-53 (87)
354 PRK00295 hypothetical protein; 27.8 1.7E+02 0.0037 23.4 5.3 30 168-197 22-51 (68)
355 PRK10559 p-hydroxybenzoic acid 27.8 2.5E+02 0.0053 27.7 7.5 31 118-148 66-96 (310)
356 cd07665 BAR_SNX1 The Bin/Amphi 27.8 5.9E+02 0.013 25.0 12.6 90 133-222 32-152 (234)
357 smart00742 Hr1 Rho effector or 27.7 2.8E+02 0.006 21.1 7.1 50 173-226 2-55 (57)
358 TIGR02231 conserved hypothetic 27.7 3.1E+02 0.0068 28.9 8.6 28 133-160 81-108 (525)
359 PF12998 ING: Inhibitor of gro 27.4 2.9E+02 0.0062 22.3 6.7 35 166-203 16-50 (105)
360 cd00176 SPEC Spectrin repeats, 27.4 3.8E+02 0.0083 22.7 10.1 80 131-210 31-117 (213)
361 PF07426 Dynactin_p22: Dynacti 27.4 2.6E+02 0.0057 26.2 7.2 52 155-206 108-160 (174)
362 PF03961 DUF342: Protein of un 27.4 2.9E+02 0.0062 28.7 8.2 27 133-159 330-356 (451)
363 PF11500 Cut12: Spindle pole b 27.3 5.3E+02 0.011 24.2 9.4 69 153-231 72-140 (152)
364 PF06785 UPF0242: Uncharacteri 27.2 4.8E+02 0.01 27.9 9.6 33 169-201 138-170 (401)
365 cd07639 BAR_ACAP1 The Bin/Amph 27.1 3.6E+02 0.0078 26.0 8.2 45 169-213 6-50 (200)
366 PF03961 DUF342: Protein of un 27.0 3E+02 0.0065 28.6 8.3 29 201-229 380-408 (451)
367 PF02994 Transposase_22: L1 tr 27.0 1.4E+02 0.0031 30.6 5.9 21 167-187 146-166 (370)
368 PF04912 Dynamitin: Dynamitin 27.0 3.1E+02 0.0067 28.0 8.2 53 130-183 87-143 (388)
369 COG0216 PrfA Protein chain rel 27.0 5.7E+02 0.012 27.2 10.1 35 208-242 81-115 (363)
370 smart00503 SynN Syntaxin N-ter 27.0 3.4E+02 0.0075 22.0 9.2 23 134-156 12-34 (117)
371 KOG4005 Transcription factor X 26.9 2.1E+02 0.0045 29.2 6.7 39 161-199 86-124 (292)
372 KOG3161 Predicted E3 ubiquitin 26.8 25 0.00054 39.7 0.5 36 5-40 199-236 (861)
373 PRK02793 phi X174 lysis protei 26.8 2.9E+02 0.0064 22.4 6.5 51 169-229 5-55 (72)
374 TIGR01010 BexC_CtrB_KpsE polys 26.2 4E+02 0.0086 26.5 8.7 90 133-228 173-267 (362)
375 PF00401 ATP-synt_DE: ATP synt 26.0 62 0.0013 24.1 2.3 20 203-222 26-45 (48)
376 PF06419 COG6: Conserved oligo 26.0 3.2E+02 0.0069 30.0 8.5 51 135-185 43-93 (618)
377 PF06401 Alpha-2-MRAP_C: Alpha 25.9 3.6E+02 0.0078 26.6 8.0 67 127-200 126-200 (214)
378 KOG2146 Splicing coactivator S 25.9 1.8E+02 0.0039 30.4 6.2 47 43-90 211-268 (354)
379 PF11544 Spc42p: Spindle pole 25.9 2E+02 0.0043 24.4 5.5 36 148-183 2-37 (76)
380 PF00992 Troponin: Troponin; 25.9 59 0.0013 29.1 2.6 51 128-178 41-91 (132)
381 TIGR01000 bacteriocin_acc bact 25.8 7.6E+02 0.016 25.6 12.4 30 198-227 278-308 (457)
382 KOG2391 Vacuolar sorting prote 25.8 3.5E+02 0.0075 28.7 8.3 29 169-197 250-278 (365)
383 COG5613 Uncharacterized conser 25.7 2.5E+02 0.0055 29.9 7.4 60 147-226 326-385 (400)
384 PF11733 NP1-WLL: Non-capsid p 25.7 27 0.00058 30.3 0.4 33 60-92 11-43 (94)
385 PRK13729 conjugal transfer pil 25.6 2E+02 0.0043 31.4 6.8 21 207-227 108-128 (475)
386 PF07439 DUF1515: Protein of u 25.4 3.1E+02 0.0068 24.8 6.9 53 135-190 13-65 (112)
387 KOG0982 Centrosomal protein Nu 25.3 7.7E+02 0.017 27.2 10.9 14 133-146 260-273 (502)
388 PRK10246 exonuclease subunit S 25.3 1E+03 0.022 27.8 12.7 13 103-115 154-166 (1047)
389 PF14915 CCDC144C: CCDC144C pr 25.0 8E+02 0.017 25.6 11.6 49 166-217 64-112 (305)
390 PF15134 DUF4570: Domain of un 25.0 5.1E+02 0.011 23.3 8.1 64 157-222 8-71 (109)
391 COG1730 GIM5 Predicted prefold 24.9 2.3E+02 0.0049 26.2 6.2 44 144-187 94-137 (145)
392 PF08580 KAR9: Yeast cortical 24.7 1.8E+02 0.0039 32.6 6.5 63 146-209 42-121 (683)
393 KOG2077 JNK/SAPK-associated pr 24.6 1.7E+02 0.0036 33.3 6.1 49 132-187 324-372 (832)
394 cd07627 BAR_Vps5p The Bin/Amph 24.6 5.9E+02 0.013 23.9 11.4 37 166-202 144-180 (216)
395 PRK06342 transcription elongat 24.4 1.6E+02 0.0035 27.1 5.2 17 166-182 65-81 (160)
396 PRK00295 hypothetical protein; 24.3 3.6E+02 0.0078 21.6 6.5 50 170-229 3-52 (68)
397 TIGR03007 pepcterm_ChnLen poly 24.2 5.8E+02 0.013 26.4 9.6 77 134-210 279-369 (498)
398 PF14817 HAUS5: HAUS augmin-li 24.2 7E+02 0.015 28.1 10.8 72 152-223 80-162 (632)
399 KOG0978 E3 ubiquitin ligase in 24.2 5.1E+02 0.011 29.6 9.8 80 147-226 499-589 (698)
400 PF03904 DUF334: Domain of unk 24.1 7.4E+02 0.016 24.9 10.7 41 136-176 42-82 (230)
401 PF11083 Streptin-Immun: Lanti 24.1 2.1E+02 0.0046 25.3 5.5 35 169-203 56-90 (99)
402 KOG4403 Cell surface glycoprot 24.0 2.1E+02 0.0044 31.5 6.5 16 205-220 311-326 (575)
403 PRK00846 hypothetical protein; 24.0 4.4E+02 0.0094 22.1 7.7 51 169-229 10-60 (77)
404 PF09340 NuA4: Histone acetylt 23.8 1E+02 0.0022 25.5 3.4 27 153-183 1-27 (80)
405 COG0419 SbcC ATPase involved i 23.8 1.1E+03 0.024 26.8 12.9 66 133-198 277-348 (908)
406 KOG3270 Uncharacterized conser 23.7 1.2E+02 0.0025 30.5 4.4 84 135-227 48-135 (244)
407 PF15066 CAGE1: Cancer-associa 23.7 1E+03 0.022 26.5 11.5 62 164-225 438-525 (527)
408 PRK15396 murein lipoprotein; P 23.7 4.4E+02 0.0096 22.1 7.3 51 138-202 26-76 (78)
409 PF13815 Dzip-like_N: Iguana/D 23.4 3.6E+02 0.0079 23.2 6.9 32 168-199 76-107 (118)
410 PRK08032 fliD flagellar cappin 23.4 4.1E+02 0.0089 28.0 8.5 72 155-226 389-461 (462)
411 PF02403 Seryl_tRNA_N: Seryl-t 23.1 4.3E+02 0.0094 21.8 10.2 12 211-222 89-100 (108)
412 PRK00736 hypothetical protein; 22.9 2.4E+02 0.0052 22.6 5.3 48 133-180 8-55 (68)
413 TIGR02971 heterocyst_DevB ABC 22.9 7E+02 0.015 24.1 10.5 12 113-126 32-43 (327)
414 PF02181 FH2: Formin Homology 22.8 5.3E+02 0.011 25.6 8.8 64 166-229 275-349 (370)
415 KOG4360 Uncharacterized coiled 22.7 7.8E+02 0.017 27.7 10.5 34 154-187 215-248 (596)
416 cd07590 BAR_Bin3 The Bin/Amphi 22.7 7.2E+02 0.016 24.2 11.3 67 164-230 97-172 (225)
417 PRK03947 prefoldin subunit alp 22.7 2.5E+02 0.0054 24.4 5.8 48 134-181 91-138 (140)
418 TIGR00999 8a0102 Membrane Fusi 22.6 2.8E+02 0.006 25.5 6.4 30 198-227 56-85 (265)
419 PF04048 Sec8_exocyst: Sec8 ex 22.5 5.5E+02 0.012 22.8 9.4 86 135-227 2-96 (142)
420 KOG3501 Molecular chaperone Pr 22.4 1.6E+02 0.0035 26.6 4.5 31 132-162 69-99 (114)
421 cd07636 BAR_GRAF The Bin/Amphi 22.4 1.8E+02 0.004 28.2 5.3 48 173-227 3-50 (207)
422 KOG3654 Uncharacterized CH dom 22.4 4.7E+02 0.01 29.4 8.8 54 147-219 405-458 (708)
423 KOG4327 mRNA splicing protein 22.3 43 0.00093 32.9 1.1 10 393-402 168-177 (218)
424 PF10158 LOH1CR12: Tumour supp 22.3 5.9E+02 0.013 23.0 8.9 16 168-183 52-67 (131)
425 TIGR02894 DNA_bind_RsfA transc 22.2 5.2E+02 0.011 24.6 8.0 48 146-193 99-146 (161)
426 PF07007 DUF1311: Protein of u 22.2 3.4E+02 0.0073 20.7 5.9 24 208-231 44-67 (95)
427 COG1729 Uncharacterized protei 22.1 1.4E+02 0.003 30.0 4.6 48 133-181 59-106 (262)
428 TIGR02350 prok_dnaK chaperone 22.0 6.1E+02 0.013 27.2 9.5 41 183-228 551-591 (595)
429 cd07666 BAR_SNX7 The Bin/Amphi 22.0 7.8E+02 0.017 24.4 9.9 15 141-155 160-174 (243)
430 PF00261 Tropomyosin: Tropomyo 21.9 7E+02 0.015 23.8 13.0 59 133-191 95-160 (237)
431 PLN02320 seryl-tRNA synthetase 21.5 1.1E+03 0.024 25.9 11.9 98 144-242 67-175 (502)
432 PRK02793 phi X174 lysis protei 21.4 2.9E+02 0.0063 22.4 5.5 47 151-197 8-54 (72)
433 PF11002 RDM: RFPL defining mo 21.4 24 0.00052 26.8 -0.6 28 167-198 14-41 (42)
434 KOG0810 SNARE protein Syntaxin 21.4 8.1E+02 0.018 25.0 9.8 18 196-213 130-147 (297)
435 PRK00106 hypothetical protein; 21.3 1.1E+03 0.024 26.0 11.9 70 158-227 111-183 (535)
436 PRK09973 putative outer membra 21.2 3.6E+02 0.0079 23.1 6.2 46 166-221 25-70 (85)
437 PTZ00186 heat shock 70 kDa pre 21.2 7.3E+02 0.016 27.6 10.2 54 182-238 578-633 (657)
438 KOG0239 Kinesin (KAR3 subfamil 21.1 1E+03 0.022 27.0 11.2 17 132-148 184-200 (670)
439 PRK14127 cell division protein 21.1 1.2E+02 0.0026 26.8 3.5 48 128-182 21-68 (109)
440 PF06818 Fez1: Fez1; InterPro 21.1 3.6E+02 0.0078 26.3 7.0 54 130-183 10-63 (202)
441 KOG0962 DNA repair protein RAD 21.0 7.5E+02 0.016 30.4 10.7 61 155-215 220-280 (1294)
442 KOG1003 Actin filament-coating 21.0 6.3E+02 0.014 25.0 8.6 47 133-179 112-158 (205)
443 COG1570 XseA Exonuclease VII, 21.0 1.1E+03 0.024 25.7 12.2 21 208-228 366-386 (440)
444 PF04136 Sec34: Sec34-like fam 20.8 5.3E+02 0.011 23.5 7.7 45 166-210 15-59 (157)
445 KOG2989 Uncharacterized conser 20.6 6.1E+02 0.013 25.8 8.6 36 140-175 125-162 (253)
446 PF07200 Mod_r: Modifier of ru 20.4 5.8E+02 0.013 22.3 9.5 76 137-212 7-88 (150)
447 PF06825 HSBP1: Heat shock fac 20.3 1.2E+02 0.0026 23.9 3.0 17 167-183 30-46 (54)
448 PF06156 DUF972: Protein of un 20.2 3.1E+02 0.0067 24.0 5.8 51 133-183 4-54 (107)
449 PF07058 Myosin_HC-like: Myosi 20.1 1E+03 0.023 25.1 10.7 47 135-181 5-51 (351)
450 PF06156 DUF972: Protein of un 20.1 4.9E+02 0.011 22.7 7.0 44 133-179 11-57 (107)
451 PRK04406 hypothetical protein; 20.1 3.1E+02 0.0067 22.5 5.5 50 148-197 8-57 (75)
No 1
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.39 E-value=7.4e-08 Score=63.91 Aligned_cols=25 Identities=44% Similarity=1.169 Sum_probs=20.6
Q ss_pred hhhhhhhhccc-CCCCC-CCCCcccCc
Q 042473 7 YKTRICVLYQK-GRCSR-PTCSFAHGD 31 (408)
Q Consensus 7 yKTkLC~~f~~-G~C~~-~~C~FAHGe 31 (408)
|||.+|.+|.+ |.|++ ++|.|+|++
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 89999999987 99999 999999985
No 2
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.16 E-value=8.1e-07 Score=85.16 Aligned_cols=38 Identities=39% Similarity=0.717 Sum_probs=34.3
Q ss_pred CCCcchhhhhhhhccc-CCCCC-CCCCcccCcccccCCCC
Q 042473 2 FERKFYKTRICVLYQK-GRCSR-PTCSFAHGDAELRRPFR 39 (408)
Q Consensus 2 ~n~~~yKTkLC~~f~~-G~C~~-~~C~FAHGe~ELR~~~~ 39 (408)
.++..|||+||.+|.+ |.|+| ..|.|+||..+++...+
T Consensus 170 ~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~~~ 209 (332)
T KOG1677|consen 170 GNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRASNR 209 (332)
T ss_pred cCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccccccc
Confidence 4678999999999997 99999 99999999999997653
No 3
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.81 E-value=8.6e-06 Score=52.07 Aligned_cols=26 Identities=38% Similarity=0.895 Sum_probs=23.6
Q ss_pred chhhhhhhhcccCCCCC-CCCCcccCc
Q 042473 6 FYKTRICVLYQKGRCSR-PTCSFAHGD 31 (408)
Q Consensus 6 ~yKTkLC~~f~~G~C~~-~~C~FAHGe 31 (408)
.|||.+|..|+.|.|++ +.|.|+|+.
T Consensus 1 ~~k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 1 KYKTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCCCcCcCccCCCCCCCCCcCCCCcC
Confidence 37999999998899999 999999973
No 4
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.65 E-value=2.3e-05 Score=75.26 Aligned_cols=36 Identities=44% Similarity=0.837 Sum_probs=32.5
Q ss_pred CCCcchhhhhhhhccc-CCCCC--CCCCcccCcccccCC
Q 042473 2 FERKFYKTRICVLYQK-GRCSR--PTCSFAHGDAELRRP 37 (408)
Q Consensus 2 ~n~~~yKTkLC~~f~~-G~C~~--~~C~FAHGe~ELR~~ 37 (408)
.+...|||.||..|+. |.|.| ++|.||||.+|||.+
T Consensus 125 ~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~ 163 (332)
T KOG1677|consen 125 RKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLP 163 (332)
T ss_pred cCcccccCCcceeeecCccccccCchhhhcCCccccccc
Confidence 4567899999999986 99999 999999999999943
No 5
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=96.97 E-value=0.00029 Score=70.76 Aligned_cols=37 Identities=27% Similarity=0.675 Sum_probs=33.7
Q ss_pred Ccchhhhhhhhccc-CCCCC-CCCCcccCcccccCCCCC
Q 042473 4 RKFYKTRICVLYQK-GRCSR-PTCSFAHGDAELRRPFRS 40 (408)
Q Consensus 4 ~~~yKTkLC~~f~~-G~C~~-~~C~FAHGe~ELR~~~~~ 40 (408)
...|||+-|..|+. |.|+| -+|.|+||..++--++.+
T Consensus 269 ~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~ 307 (351)
T COG5063 269 KQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEE 307 (351)
T ss_pred ccccccCCccchhhcccCccccccccccCChhhcccccc
Confidence 46899999999997 99999 999999999999888765
No 6
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=93.94 E-value=0.019 Score=61.19 Aligned_cols=35 Identities=37% Similarity=0.573 Sum_probs=23.4
Q ss_pred CCcchhhhhhhhcccCCCCCCCCCcccCcccccCCCC
Q 042473 3 ERKFYKTRICVLYQKGRCSRPTCSFAHGDAELRRPFR 39 (408)
Q Consensus 3 n~~~yKTkLC~~f~~G~C~~~~C~FAHGe~ELR~~~~ 39 (408)
.+..|||++|..- |+|++--|-|||-.+|||..+.
T Consensus 265 HPa~YRT~~CkDg--~~C~RrvCfFAH~~eqLR~l~~ 299 (528)
T KOG1595|consen 265 HPARYRTRKCKDG--GYCPRRVCFFAHSPEQLRPLPP 299 (528)
T ss_pred CHHHhccccccCC--CCCccceEeeecChHHhcccCC
Confidence 3455777777655 6777766777777777776655
No 7
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=93.82 E-value=0.028 Score=56.98 Aligned_cols=36 Identities=36% Similarity=0.815 Sum_probs=31.9
Q ss_pred CCCcchhh--hhhhhccc-CCCCC----CCCCcc---cCcccccCC
Q 042473 2 FERKFYKT--RICVLYQK-GRCSR----PTCSFA---HGDAELRRP 37 (408)
Q Consensus 2 ~n~~~yKT--kLC~~f~~-G~C~~----~~C~FA---HGe~ELR~~ 37 (408)
+|-++||| .||..|.. |+|+| ++|+|| ||-.||..-
T Consensus 221 ~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k 266 (351)
T COG5063 221 QNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSK 266 (351)
T ss_pred ccchhhcCCHHHhhccCcCCCCcccccccccccccccccccccccc
Confidence 56789999 99999985 99999 899999 999998654
No 8
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=93.22 E-value=0.038 Score=55.86 Aligned_cols=42 Identities=24% Similarity=0.489 Sum_probs=35.3
Q ss_pred chhhhhhhhcccCCCCC-CCCCcccCcccccCCCCC--CCCCCCC
Q 042473 6 FYKTRICVLYQKGRCSR-PTCSFAHGDAELRRPFRS--HHGGPDY 47 (408)
Q Consensus 6 ~yKTkLC~~f~~G~C~~-~~C~FAHGe~ELR~~~~~--~~grrD~ 47 (408)
--|+-+|.+|..|.|.. ++|.|+|+.+.-|..+-. |+..||.
T Consensus 89 DPKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rde 133 (343)
T KOG1763|consen 89 DPKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDE 133 (343)
T ss_pred CchHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhh
Confidence 34899999999999999 999999999998887664 6655543
No 9
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.02 E-value=3.4 Score=36.31 Aligned_cols=91 Identities=22% Similarity=0.375 Sum_probs=59.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 129 SDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSS-------RIKELETQLQKEKEESKRIASKIKKFVKA 201 (408)
Q Consensus 129 s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lss-------ri~eLe~qL~kEkeeCkr~tSkiKKfvKa 201 (408)
...++.|+.++.....|+..|..+-..|+.-+++.-.|+..+.+ .+..++..+..+++|..++-..+.-.--.
T Consensus 51 ~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq 130 (151)
T PF11559_consen 51 MEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQ 130 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888877777777777666654444 44555556666777777776666655555
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhh
Q 042473 202 HNRHSQMQDDLKRSQARLQKLGYH 225 (408)
Q Consensus 202 h~r~~raQdeLKrsqaRl~kl~d~ 225 (408)
|.+ |+||-+--+++|-+.
T Consensus 131 ~~~------e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 131 YEH------ELRKKEREIEKLKER 148 (151)
T ss_pred HHH------HHHHHHHHHHHHHHH
Confidence 544 444544555555443
No 10
>PRK11637 AmiB activator; Provisional
Probab=92.79 E-value=1.8 Score=43.96 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
.+++||++++..|+.+..+..+++-.+.+-..++..|...|..++.+|+.
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~ 93 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRE 93 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444444444444444444444434444444444444444333
No 11
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.28 E-value=3.3 Score=36.40 Aligned_cols=96 Identities=17% Similarity=0.324 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHH---HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 042473 133 VVLLEQLKEVQLDI---NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQ 209 (408)
Q Consensus 133 ~~leeQLk~v~~D~---~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQ 209 (408)
|.+..=|.+.+.|+ +.|.+.-..|+.-++.-...+..|..++.+++..++..+..+..+..+++.+..+++. ..
T Consensus 38 n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~---~k 114 (151)
T PF11559_consen 38 NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ---EK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 55666777777777 5677777778888888888889999999999999999999999999999888777764 56
Q ss_pred HHHHHHHHHHHHhhhhhhhhhc
Q 042473 210 DDLKRSQARLQKLGYHLGLDAT 231 (408)
Q Consensus 210 deLKrsqaRl~kl~d~l~sd~~ 231 (408)
||+.|.+.-++-..-+...++=
T Consensus 115 ee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 115 EELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7999988888887777776643
No 12
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=92.28 E-value=0.047 Score=54.03 Aligned_cols=42 Identities=31% Similarity=0.574 Sum_probs=34.7
Q ss_pred chhhhhhhhcccCCCCC-CCCCcccCcccccCCCCC--CCCCCCC
Q 042473 6 FYKTRICVLYQKGRCSR-PTCSFAHGDAELRRPFRS--HHGGPDY 47 (408)
Q Consensus 6 ~yKTkLC~~f~~G~C~~-~~C~FAHGe~ELR~~~~~--~~grrD~ 47 (408)
.-||..|..|..|+|.. +.|.||||-+|-|...-. |+.-||-
T Consensus 82 dpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~ 126 (299)
T COG5252 82 DPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDK 126 (299)
T ss_pred CchhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhh
Confidence 45899999999999999 999999999999887554 6644443
No 13
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.91 E-value=1.8 Score=41.11 Aligned_cols=54 Identities=30% Similarity=0.372 Sum_probs=26.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
+.+..|..++.++...++.|.....+|+..++..-.|+..|..+|.+++.....
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554444444444444444444333
No 14
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=91.79 E-value=0.25 Score=48.93 Aligned_cols=29 Identities=28% Similarity=0.677 Sum_probs=25.6
Q ss_pred CCcchhhhhhhhcccCCCCC-CCCCcccCc
Q 042473 3 ERKFYKTRICVLYQKGRCSR-PTCSFAHGD 31 (408)
Q Consensus 3 n~~~yKTkLC~~f~~G~C~~-~~C~FAHGe 31 (408)
+-+-|+-..|..|+.+.|++ ..|+|-|--
T Consensus 146 pvT~~rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 146 PVTDFREAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred CcCchhhhhhcccccccCCCCCcCcchhhh
Confidence 34568999999999999999 999999965
No 15
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=91.24 E-value=0.22 Score=53.41 Aligned_cols=36 Identities=31% Similarity=0.591 Sum_probs=32.0
Q ss_pred chhhhhhhhcccCCCCC-CCCCcccCcccccCCCCCC
Q 042473 6 FYKTRICVLYQKGRCSR-PTCSFAHGDAELRRPFRSH 41 (408)
Q Consensus 6 ~yKTkLC~~f~~G~C~~-~~C~FAHGe~ELR~~~~~~ 41 (408)
.|-..-|-.|++|.|.. +.|.||||.-|---.|..|
T Consensus 233 hYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~Y 269 (528)
T KOG1595|consen 233 HYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHPARY 269 (528)
T ss_pred cccCccCcccccCCCCCCCccccccceehhhcCHHHh
Confidence 36667899999999999 9999999999988888877
No 16
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.22 E-value=6.3 Score=35.39 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFV 199 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfv 199 (408)
...+.||.+.+.+++.|......++.-+..-...-..+..-.+.++..|..-++.|+.|.+.+..+.
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777666666666666666666666666666666766666665
No 17
>PRK11637 AmiB activator; Provisional
Probab=91.20 E-value=3 Score=42.39 Aligned_cols=52 Identities=8% Similarity=0.181 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
.+.++.|+++.+.++..+..+..+++..|+.-..++..+..+|++++.+|..
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~ 100 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQ 100 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666665555555555555544444444444444444444444
No 18
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.19 E-value=2.2 Score=38.20 Aligned_cols=88 Identities=19% Similarity=0.278 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRI--KELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLK 213 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri--~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLK 213 (408)
.++|.++..+|..|+++-..|+..+-.-..|...|.+.. .+|..++..-+++|..|.+++..|-..-.. --.+|.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~--vs~ee~~ 148 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP--VSPEEKE 148 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHH
Confidence 445666666666666666666666666666667777765 677788888888888888888887763332 2356677
Q ss_pred HHHHHHHHhhhh
Q 042473 214 RSQARLQKLGYH 225 (408)
Q Consensus 214 rsqaRl~kl~d~ 225 (408)
+.+..+.++..+
T Consensus 149 ~~~~~~~~~~k~ 160 (169)
T PF07106_consen 149 KLEKEYKKWRKE 160 (169)
T ss_pred HHHHHHHHHHHH
Confidence 777666665543
No 19
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=90.98 E-value=1.8 Score=41.35 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=70.9
Q ss_pred cchhhccccCCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 042473 118 NDRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK- 196 (408)
Q Consensus 118 ~d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK- 196 (408)
.|.|+.|-...-=+...++.+|.+.+..+.++..+..+|+..+..-..++..+...+...+.+|...+.+-+|+..=.+
T Consensus 61 G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~ 140 (334)
T TIGR00998 61 TDYVKQGDVLVRLDPTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKK 140 (334)
T ss_pred CCEEcCCCEEEEECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 3778777765555567888999999999999999999988887776677777778888888888877777777653222
Q ss_pred ------HHHHHhhhhhhhhHHHHHHHH
Q 042473 197 ------KFVKAHNRHSQMQDDLKRSQA 217 (408)
Q Consensus 197 ------KfvKah~r~~raQdeLKrsqa 217 (408)
.|-.+...|..|+.+|..+++
T Consensus 141 g~is~~~~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 141 GLISREELDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444555555555555544
No 20
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.79 E-value=2.7 Score=43.12 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEE-------SKRIASKIKKFVKAHNR 204 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkee-------Ckr~tSkiKKfvKah~r 204 (408)
-..++.|+++++.+++.|.+...+|+..++ +...+..++.+|+.++..-++. =..+.+.|.++...
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~----~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~--- 373 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAIDELEEIMD----EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE--- 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 345667777777777777777777766665 3456667777776666554444 23333333333332
Q ss_pred hhhhhHHHHHHHHHHHHhhhh
Q 042473 205 HSQMQDDLKRSQARLQKLGYH 225 (408)
Q Consensus 205 ~~raQdeLKrsqaRl~kl~d~ 225 (408)
+....++|+.-+.+|..+-+.
T Consensus 374 ~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 374 FVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred hhchHHHHHHHHHHHHHHHHH
Confidence 333445555555555554444
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.49 E-value=3.7 Score=44.53 Aligned_cols=88 Identities=24% Similarity=0.389 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDL 212 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeL 212 (408)
..|+.||.+++...+.|......|+-.+ ..|-.+|..|+.+|...+++|..+..+.+.+...+..+..=.+.|
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~-------~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L 211 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEV-------EQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESL 211 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888877777776666665443 678999999999999999999999999999888887666544554
Q ss_pred HH----HHHHHHHhhhhhh
Q 042473 213 KR----SQARLQKLGYHLG 227 (408)
Q Consensus 213 Kr----sqaRl~kl~d~l~ 227 (408)
+. +.+|+..|-..+.
T Consensus 212 ~~q~~e~~~ri~~LEedi~ 230 (546)
T PF07888_consen 212 KEQLAEARQRIRELEEDIK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 44 5566666655544
No 22
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.86 E-value=6.4 Score=37.17 Aligned_cols=94 Identities=21% Similarity=0.329 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHh-hhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------h
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEE-EKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH--------N 203 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~le-eK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah--------~ 203 (408)
..++..|+++..+|-.+.++-..|+-..+ +.+.|-.+|..++..|+..|......-.-|--++.=--+.| .
T Consensus 85 r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~k 164 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKK 164 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45777888899999888888888877665 77889999999999999999887776666555554444444 4
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhh
Q 042473 204 RHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 204 r~~raQdeLKrsqaRl~kl~d~l 226 (408)
....||++++..+-.+++|-..|
T Consensus 165 K~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 165 KHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888876554
No 23
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=89.64 E-value=2.8 Score=40.95 Aligned_cols=102 Identities=9% Similarity=0.118 Sum_probs=66.4
Q ss_pred chhhccccCCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 042473 119 DRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK-- 196 (408)
Q Consensus 119 d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK-- 196 (408)
|.||.|-....=+...++.+|.+.+.++.++..+-..++..++....+...+...+..++.++...+.+-.|+..-.+
T Consensus 68 ~~VkkGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g 147 (346)
T PRK10476 68 QAVKKGDLLFRIDPRPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKG 147 (346)
T ss_pred CEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 778877764444556778888888888888777766666666666666677778888888888877777766543332
Q ss_pred -----HHHHHhhhhhhhhHHHHHHHHHHH
Q 042473 197 -----KFVKAHNRHSQMQDDLKRSQARLQ 220 (408)
Q Consensus 197 -----KfvKah~r~~raQdeLKrsqaRl~ 220 (408)
.|..+...|..|+.+|+.+++++.
T Consensus 148 ~vS~~~~~~a~~~~~~a~~~l~~a~~~~~ 176 (346)
T PRK10476 148 YVSAQQVDQARTAQRDAEVSLNQALLQAQ 176 (346)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444444444444444443
No 24
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=88.62 E-value=0.24 Score=30.96 Aligned_cols=18 Identities=28% Similarity=0.802 Sum_probs=14.6
Q ss_pred hhhhcccCCCCC-CCCCcccC
Q 042473 11 ICVLYQKGRCSR-PTCSFAHG 30 (408)
Q Consensus 11 LC~~f~~G~C~~-~~C~FAHG 30 (408)
+|++|.. |.+ ++|.|+|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4776655 999 79999995
No 25
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.61 E-value=6.9 Score=41.89 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 042473 139 LKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQAR 218 (408)
Q Consensus 139 Lk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaR 218 (408)
+.+....+..|+.--..|....++-..|--+++.++..|-.||.-+++.-+||.-+.+.|.+-|.--..+=+||.+.--+
T Consensus 306 ~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkeleh 385 (502)
T KOG0982|consen 306 DQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEH 385 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444455555555555666666666778888899999999999999999999999999999999999999999888
Q ss_pred HHHhhhhhh
Q 042473 219 LQKLGYHLG 227 (408)
Q Consensus 219 l~kl~d~l~ 227 (408)
|+++--.++
T Consensus 386 lr~~kl~~a 394 (502)
T KOG0982|consen 386 LRRRKLVLA 394 (502)
T ss_pred HHHHHHHhh
Confidence 887654444
No 26
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=88.42 E-value=0.49 Score=31.63 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=17.0
Q ss_pred hhhHHHHhhHHHHHHHHHH
Q 042473 165 QEADILSSRIKELETQLQK 183 (408)
Q Consensus 165 ~E~~~Lssri~eLe~qL~k 183 (408)
.|++.|-+||.+||.||..
T Consensus 1 ~E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSE 19 (23)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4889999999999999975
No 27
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.31 E-value=8.6 Score=42.12 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHH-------
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIA----SKIKKFVK------- 200 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~t----SkiKKfvK------- 200 (408)
.+...++|++...+...|+++.+.+....+++++..+.|..+++.+++.-..-+++-.+.- .-|.++++
T Consensus 427 ~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l 506 (581)
T KOG0995|consen 427 LDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKL 506 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999999999999999999887654444333322 23334433
Q ss_pred -HhhhhhhhhHHHHHHHHHHHHhhhh
Q 042473 201 -AHNRHSQMQDDLKRSQARLQKLGYH 225 (408)
Q Consensus 201 -ah~r~~raQdeLKrsqaRl~kl~d~ 225 (408)
.+.-+..|-+.++.++-++++++-.
T Consensus 507 ~~~~~m~~a~~~v~s~e~el~~~~~~ 532 (581)
T KOG0995|consen 507 VLNTSMKEAEELVKSIELELDRMVAT 532 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888877643
No 28
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=87.27 E-value=0.25 Score=51.93 Aligned_cols=31 Identities=32% Similarity=0.732 Sum_probs=25.5
Q ss_pred hhhhhhcccCCCCC-CCCCcccCcc----cccCCCC
Q 042473 9 TRICVLYQKGRCSR-PTCSFAHGDA----ELRRPFR 39 (408)
Q Consensus 9 TkLC~~f~~G~C~~-~~C~FAHGe~----ELR~~~~ 39 (408)
-+.|.+|..|.|.+ .+|.|-||.. +||+...
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~V~lsslr~yq~ 175 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLDVPLSSLRNYQQ 175 (486)
T ss_pred hccchHhhccccccCcccccccCcccchhhcccCCC
Confidence 36799999999999 9999999974 5665544
No 29
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.21 E-value=18 Score=32.46 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042473 138 QLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRH 205 (408)
Q Consensus 138 QLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~ 205 (408)
.+.+.+.=+..|.++-.+|+..+.+...+...+..-...+...+...++....+.+.++.+.+-+..+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIREL 149 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444444444444444444444444444333
No 30
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=87.06 E-value=0.43 Score=48.71 Aligned_cols=27 Identities=30% Similarity=0.716 Sum_probs=22.7
Q ss_pred hhhhhhcccCCCCC-CC-CCcccCccccc
Q 042473 9 TRICVLYQKGRCSR-PT-CSFAHGDAELR 35 (408)
Q Consensus 9 TkLC~~f~~G~C~~-~~-C~FAHGe~ELR 35 (408)
-..|+.|.+|.|.+ +. |.|||=..-+-
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP~~~~~ 65 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHPPKNCQ 65 (331)
T ss_pred HHHHHHHHhccccCCCccccccCCCCCCC
Confidence 36899999999999 77 99999776443
No 31
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.24 E-value=9.5 Score=38.15 Aligned_cols=85 Identities=24% Similarity=0.305 Sum_probs=62.9
Q ss_pred HHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhhHHHHHHHHHH
Q 042473 144 LDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHS----QMQDDLKRSQARL 219 (408)
Q Consensus 144 ~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~----raQdeLKrsqaRl 219 (408)
.+++.+.++-..|+...++..+|+..|.....+|+.+|...+++-..+......|.+.++-|. ..++++.-.++++
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666667777777777777888888888888888888888888888888888885554 6677777777887
Q ss_pred HHhhhhhhh
Q 042473 220 QKLGYHLGL 228 (408)
Q Consensus 220 ~kl~d~l~s 228 (408)
+-.-++|..
T Consensus 123 ~~~~~~L~~ 131 (314)
T PF04111_consen 123 EYASNQLDR 131 (314)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 777777643
No 32
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.06 E-value=20 Score=31.85 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=49.1
Q ss_pred hhhhHHHHHH-------HHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 042473 131 SKVVLLEQLK-------EVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFV--KA 201 (408)
Q Consensus 131 ~k~~leeQLk-------~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfv--Ka 201 (408)
+++.|+.+|. ......+-|..+|.+|+..+..=-.+......||++|+.+|..-.- .|-+ .|.- .+
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~---~le~--eK~ak~~l 84 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR---NLED--EKQAKLEL 84 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHH
Confidence 4555555554 4555667889999999999998888888899999999988876221 1222 2222 24
Q ss_pred hhhhhhhhHH
Q 042473 202 HNRHSQMQDD 211 (408)
Q Consensus 202 h~r~~raQde 211 (408)
-.|+.++|-+
T Consensus 85 ~~r~~k~~~d 94 (107)
T PF09304_consen 85 ESRLLKAQKD 94 (107)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 4667766654
No 33
>PRK09039 hypothetical protein; Validated
Probab=85.87 E-value=7.4 Score=39.32 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESK 189 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCk 189 (408)
..+++++|.+++.++.++...+..|+..++.+......+..+...|+.+|..++..-.
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~s 133 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSA 133 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999998887776666677777777777766665543
No 34
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.08 E-value=11 Score=36.08 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=56.8
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHS 206 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~ 206 (408)
..++.+..++.+|.+++.-|+.+..+|++|++.++ .|...+.+|..++..+...|..|-+-+.++=|..-...
T Consensus 44 ~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~-------~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~ 116 (312)
T PF00038_consen 44 EVSRIKEMYEEELRELRRQIDDLSKEKARLELEID-------NLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEET 116 (312)
T ss_dssp --HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 45567889999999999999999999999998765 45566666667777777777777776666665554444
Q ss_pred hhhHHH
Q 042473 207 QMQDDL 212 (408)
Q Consensus 207 raQdeL 212 (408)
.++.+|
T Consensus 117 ~~r~~l 122 (312)
T PF00038_consen 117 LARVDL 122 (312)
T ss_dssp HHHHHH
T ss_pred hhHhHH
Confidence 444333
No 35
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.08 E-value=27 Score=31.41 Aligned_cols=80 Identities=26% Similarity=0.376 Sum_probs=38.2
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhHHHHHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKI-------KKFVKAHNRHSQMQDDLKRSQARL 219 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSki-------KKfvKah~r~~raQdeLKrsqaRl 219 (408)
+.|..+.-+||..+..+=+|+..|..|+..||.+|.+-.+.-+.+-.+. ...--+-.|+-.+.++|.+|..+|
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L 96 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333444444444445555555555555555554443333222221 112223355566677777777777
Q ss_pred HHhhhhh
Q 042473 220 QKLGYHL 226 (408)
Q Consensus 220 ~kl~d~l 226 (408)
.-....|
T Consensus 97 ~e~~ekl 103 (143)
T PF12718_consen 97 KETTEKL 103 (143)
T ss_pred HHHHHHH
Confidence 5544433
No 36
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=84.47 E-value=3 Score=36.31 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=49.6
Q ss_pred cchhhccccCCCchhhhHHHHHHHHHHHHHHHH--------hhhhhhHhHHhhhh------------hhhHHHHhhHHHH
Q 042473 118 NDRVKERKFTPSDSKVVLLEQLKEVQLDINVLE--------DRKLQLETNEEEKG------------QEADILSSRIKEL 177 (408)
Q Consensus 118 ~d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~--------d~Ks~LE~~leeK~------------~E~~~Lssri~eL 177 (408)
++=|+.|......-+.-.++.+..+...++... .++..||..+++.+ .|++.|..||..|
T Consensus 29 ~~LVkkGe~~~ee~k~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~L 108 (118)
T TIGR01837 29 NRLVKEGELAEKRGQKRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQL 108 (118)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 355777777777777878888888876664433 34467777777665 5788999999999
Q ss_pred HHHHHHHH
Q 042473 178 ETQLQKEK 185 (408)
Q Consensus 178 e~qL~kEk 185 (408)
|.+|..-+
T Consensus 109 e~~l~~l~ 116 (118)
T TIGR01837 109 AVQVEELR 116 (118)
T ss_pred HHHHHHHh
Confidence 99998743
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=84.21 E-value=18 Score=39.61 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhhhhhHhHH
Q 042473 139 LKEVQLDINVLEDRKLQLETNE 160 (408)
Q Consensus 139 Lk~v~~D~~~L~d~Ks~LE~~l 160 (408)
|++++.++..|..+...++..+
T Consensus 208 l~~~~~~l~el~~~i~~~~~~~ 229 (880)
T PRK02224 208 LNGLESELAELDEEIERYEEQR 229 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 38
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.19 E-value=18 Score=39.48 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=21.6
Q ss_pred HhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 157 ETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK 196 (408)
Q Consensus 157 E~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK 196 (408)
....+.-..|.+.|.....++..++..-.++..-|+.+.+
T Consensus 198 ~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 198 TESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555566666666664
No 39
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=83.90 E-value=0.44 Score=48.33 Aligned_cols=33 Identities=21% Similarity=0.511 Sum_probs=29.1
Q ss_pred chhhhhhhhcccCCCCC-CCCCcccCcccccCCCC
Q 042473 6 FYKTRICVLYQKGRCSR-PTCSFAHGDAELRRPFR 39 (408)
Q Consensus 6 ~yKTkLC~~f~~G~C~~-~~C~FAHGe~ELR~~~~ 39 (408)
.+++.+|.+|.+|.|.. +.|.|.|-. +|...+.
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe~-~~~k~re 107 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHEY-DLTKMRE 107 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhhh-hhccccc
Confidence 78999999999999999 999999988 6665544
No 40
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.73 E-value=3.7 Score=36.78 Aligned_cols=55 Identities=31% Similarity=0.403 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHH--hhhhhhhHHHHhhHHHHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNE--EEKGQEADILSSRIKELETQLQKEKE 186 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~l--eeK~~E~~~Lssri~eLe~qL~kEke 186 (408)
-..|.+||.+++.+++.|..+-..|...+ ++=..++..|...|..|+.+|..-+.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888888888888888777776655 55667777888888888888887544
No 41
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=83.50 E-value=19 Score=39.41 Aligned_cols=10 Identities=10% Similarity=0.388 Sum_probs=3.8
Q ss_pred hHHHHHHHHH
Q 042473 209 QDDLKRSQAR 218 (408)
Q Consensus 209 QdeLKrsqaR 218 (408)
+.++...+..
T Consensus 914 ~~~l~~l~~~ 923 (1179)
T TIGR02168 914 RRELEELREK 923 (1179)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 42
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=83.45 E-value=26 Score=34.20 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhh
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASK-------IKKFVKAHNRHSQ 207 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSk-------iKKfvKah~r~~r 207 (408)
+..+...+..-...+..++.+|+..++.--.++..+.+.+..++.+|..-++.-.+...- -..|..+...|..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~ 207 (423)
T TIGR01843 128 IKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAE 207 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555566666666666666655544443211 2245555566677
Q ss_pred hhHHHHHHHHHHHHhhh
Q 042473 208 MQDDLKRSQARLQKLGY 224 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d 224 (408)
+|.++..+++.+..+..
T Consensus 208 ~~~~l~~~~~~l~~~~~ 224 (423)
T TIGR01843 208 AQGELGRLEAELEVLKR 224 (423)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 77777766666655433
No 43
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.44 E-value=13 Score=35.44 Aligned_cols=75 Identities=13% Similarity=0.210 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQ 207 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~r 207 (408)
+.+.+|-.++..++..|..+...|+.+.+.--..+..+...+.+|+.|+..-.+-=..|.--+..+|..-..||.
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444444444455555555544444444444444444444444443
No 44
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.39 E-value=3.6 Score=39.89 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 042473 139 LKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQAR 218 (408)
Q Consensus 139 Lk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaR 218 (408)
|.+...+|+.|.++|..+ ++|..-|..-|+.||..+..-+.+|.++--.|..+.-.|..+.-.=+++.++..-
T Consensus 34 L~e~~kE~~~L~~Er~~h-------~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAH-------VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLG 106 (230)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444444444444444333 3455667888999999999999999998888877666666666655666554433
Q ss_pred HHH
Q 042473 219 LQK 221 (408)
Q Consensus 219 l~k 221 (408)
|..
T Consensus 107 l~~ 109 (230)
T PF10146_consen 107 LEP 109 (230)
T ss_pred CCC
Confidence 333
No 45
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.76 E-value=6.5 Score=39.06 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccCC
Q 042473 208 MQDDLKRSQARLQKLGYHLGLDATKVG 234 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l~sd~~k~g 234 (408)
-..|+++-+++|+.|=....--+++.-
T Consensus 274 t~~Ev~~Lk~~~~~Le~~~gw~~~~~~ 300 (325)
T PF08317_consen 274 TRSEVKRLKAKVDALEKLTGWKIVSIS 300 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHCcEEEEEe
Confidence 456889999999988888887777654
No 46
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.23 E-value=19 Score=36.84 Aligned_cols=67 Identities=10% Similarity=0.145 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCC--CCCCcccccCCCCCCCcccCCC
Q 042473 191 IASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGN--EEDSSINIMSDEETTNYHLVDP 258 (408)
Q Consensus 191 ~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~~k~g~n--eedsSini~sd~e~~~~~~~sp 258 (408)
+-..+.++-..=..|.+.|-|+.-++.-++.|...+.-=-+..... ...++|.|+.-..+|. .++.|
T Consensus 343 ~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~~~~~~~~i~vi~~A~~P~-~P~~P 411 (498)
T TIGR03007 343 LESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVSKQMEVQDKAVSFRIIDPPIVPS-KPSGP 411 (498)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCceEEEeCCCCCCC-CCCCC
Confidence 3334444444455666677777777776666666553322222111 2346677775444442 34444
No 47
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=82.19 E-value=0.56 Score=47.93 Aligned_cols=27 Identities=41% Similarity=0.789 Sum_probs=24.3
Q ss_pred hhhhhcccCCCCCCCCCcccCcccccC
Q 042473 10 RICVLYQKGRCSRPTCSFAHGDAELRR 36 (408)
Q Consensus 10 kLC~~f~~G~C~~~~C~FAHGe~ELR~ 36 (408)
--|..|++|.|.+++|.|+|+..+|+-
T Consensus 72 ~aC~Ds~kgrCsR~nCkylHpp~hlkd 98 (331)
T KOG2494|consen 72 IACFDSQKGRCSRENCKYLHPPQHLKD 98 (331)
T ss_pred EEEeccccCccCcccceecCCChhhhh
Confidence 359999999999999999999998874
No 48
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.96 E-value=26 Score=33.08 Aligned_cols=92 Identities=22% Similarity=0.327 Sum_probs=63.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASK----IKKFVKAHNRHS 206 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSk----iKKfvKah~r~~ 206 (408)
-+..|++ |=.+..|-..+.+..-.||.-+.++-.|-.++.+.|.+||..|-.-++.+.-|..+ .+...+.=...-
T Consensus 91 l~~RL~k-LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~ 169 (190)
T PF05266_consen 91 LRSRLNK-LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE 169 (190)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 66677777777777778888888887788999999999999988888876555433 333333334445
Q ss_pred hhhHHHHHHHHHHHHhh
Q 042473 207 QMQDDLKRSQARLQKLG 223 (408)
Q Consensus 207 raQdeLKrsqaRl~kl~ 223 (408)
.+++++...+-+|+..+
T Consensus 170 ~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 170 ALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56777777777777654
No 49
>PRK03918 chromosome segregation protein; Provisional
Probab=81.77 E-value=22 Score=38.79 Aligned_cols=9 Identities=0% Similarity=0.021 Sum_probs=3.5
Q ss_pred Hhhhhhhhh
Q 042473 221 KLGYHLGLD 229 (408)
Q Consensus 221 kl~d~l~sd 229 (408)
++++.+.+.
T Consensus 747 ~~~~~if~~ 755 (880)
T PRK03918 747 EIASEIFEE 755 (880)
T ss_pred HHHHHHHHH
Confidence 333444443
No 50
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.69 E-value=20 Score=34.29 Aligned_cols=83 Identities=11% Similarity=0.248 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLK 213 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLK 213 (408)
.+-++|.+++.++..|+++-..+....+ ++...|..++++++.++..-+++-.++...+ ..+|.++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l----------~~~~~~~~ 156 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQL----------IVAQKKVD 156 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 3445666666666666654444443333 4445555555555555555444444443332 23555555
Q ss_pred HHHHHHHHhhhhhhhh
Q 042473 214 RSQARLQKLGYHLGLD 229 (408)
Q Consensus 214 rsqaRl~kl~d~l~sd 229 (408)
-.++.++.+-+....+
T Consensus 157 ~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 157 AANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555444433
No 51
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=81.08 E-value=27 Score=38.56 Aligned_cols=7 Identities=0% Similarity=-0.035 Sum_probs=3.6
Q ss_pred hhhhhcc
Q 042473 10 RICVLYQ 16 (408)
Q Consensus 10 kLC~~f~ 16 (408)
..|..|-
T Consensus 561 ~~~i~~l 567 (1164)
T TIGR02169 561 KEAIELL 567 (1164)
T ss_pred HHHHHHH
Confidence 4566553
No 52
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=80.20 E-value=35 Score=31.85 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=16.1
Q ss_pred HHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 146 INVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 146 ~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
+..++++-..|+..++....++.....++.++..+|..
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444
No 53
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.97 E-value=25 Score=34.30 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=28.9
Q ss_pred ccCCCCcchhhccccCCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHh
Q 042473 112 KISDGINDRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEE 161 (408)
Q Consensus 112 ~~sd~~~d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~le 161 (408)
.|.+| |.++.|-....=+...++.||..++..+..|..+...|+..++
T Consensus 58 ~V~eG--~~V~kG~~L~~ld~~~~~~~l~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 58 LVREG--DRVKAGQVLVELDATDVEADAAELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred EeCCC--CEecCCCeEEEEccchhhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35554 6666655533334456677777777777777766655554443
No 54
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=79.61 E-value=11 Score=31.69 Aligned_cols=60 Identities=23% Similarity=0.240 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 138 QLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 138 QLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
.|+++-.++..--++..++-..|+.-++.++.|-..|..||.-+..-.+=|+++=+|+|+
T Consensus 39 ~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 39 KMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555555555666777777788999999999999999999999999999886
No 55
>PRK12704 phosphodiesterase; Provisional
Probab=79.40 E-value=22 Score=38.11 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=9.3
Q ss_pred HHhhhhhhhhhccCCCCC
Q 042473 220 QKLGYHLGLDATKVGGNE 237 (408)
Q Consensus 220 ~kl~d~l~sd~~k~g~ne 237 (408)
++.|..+++..+.+.+.+
T Consensus 187 ~~~a~~i~~~a~qr~a~~ 204 (520)
T PRK12704 187 DKKAKEILAQAIQRCAAD 204 (520)
T ss_pred HHHHHHHHHHHHHhhcch
Confidence 445555555555555544
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=79.37 E-value=27 Score=36.03 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHHHHHHH
Q 042473 131 SKVVLLEQLKEVQLDIN 147 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~ 147 (408)
....++.||+.+..-+.
T Consensus 307 ~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 307 KLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666665555554
No 57
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=79.17 E-value=22 Score=38.00 Aligned_cols=17 Identities=6% Similarity=0.257 Sum_probs=11.4
Q ss_pred cccccCCCCCCcccccc
Q 042473 273 LHVDRDTTNGFVPEANL 289 (408)
Q Consensus 273 ~~~~~~t~e~~~~~~~~ 289 (408)
++++.-|.+....||++
T Consensus 257 reia~~~l~~li~dgri 273 (514)
T TIGR03319 257 REIARMALEKLIQDGRI 273 (514)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 35666677777777766
No 58
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=78.55 E-value=25 Score=36.76 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLK 213 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLK 213 (408)
.+|+..|++--=+..|+.+|+-| +=+|+-|-.-+.|+|.||+----+|.-.++-++..-.+|.-+---|.+||
T Consensus 123 EveekykkaMvsnaQLDNEKsnl-------~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elK 195 (405)
T KOG2010|consen 123 EVEEKYKKAMVSNAQLDNEKNNL-------IYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELK 195 (405)
T ss_pred HHHHHHHHHHHHHHhhcccccce-------eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777788888876 45778899999999999999999999999999988888866666667777
Q ss_pred HHHHHHHHhhhhhhhhhccCCCCCCCCcccccCC
Q 042473 214 RSQARLQKLGYHLGLDATKVGGNEEDSSINIMSD 247 (408)
Q Consensus 214 rsqaRl~kl~d~l~sd~~k~g~needsSini~sd 247 (408)
-.-..=+.|-.....-|+--+.-.++.|-|-+++
T Consensus 196 e~l~QRdeliee~Gl~~I~~~t~~g~~s~~~v~g 229 (405)
T KOG2010|consen 196 EGLRQRDELIEEHGLVIIPDGTPNGDVSHEPVAG 229 (405)
T ss_pred HHHHHHHHHHHHcCeEeccCCCCCcccccCcccc
Confidence 6544333333333333333333334444333333
No 59
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=77.42 E-value=5.9 Score=40.39 Aligned_cols=66 Identities=26% Similarity=0.423 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhh---hhhhh-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEE---KGQEA-DILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~lee---K~~E~-~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
+..+++++..+++.|.+.-+.....++. ++..+ ..|++||++||..++.-.+.+..|+..++...|
T Consensus 103 l~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k 172 (370)
T PF02994_consen 103 LKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEK 172 (370)
T ss_dssp ---------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 4455566666666665322221111111 11111 368999999999999999999999988877654
No 60
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=77.38 E-value=33 Score=37.63 Aligned_cols=92 Identities=23% Similarity=0.340 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhh
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH-------NRHSQM 208 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah-------~r~~ra 208 (408)
+....+.+.++..|.++-..|+..+++-..|+..|...+..++..+...+.++.++....+---|++ .-+.++
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL 399 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKL 399 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3334555666666666666666666666677777777777777777777777777776666555554 445566
Q ss_pred hHHHHHHHHHHHHhhhhhh
Q 042473 209 QDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 209 QdeLKrsqaRl~kl~d~l~ 227 (408)
|.-+..+..|+..|+.+.-
T Consensus 400 ~~~v~~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWE 418 (594)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777778888888877653
No 61
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=77.30 E-value=46 Score=30.74 Aligned_cols=87 Identities=23% Similarity=0.315 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHH-------------HHH----HHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQ-------------KEK----EESKRIASKIKK 197 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~-------------kEk----eeCkr~tSkiKK 197 (408)
-..||.++..||..|..+++.-+..|-.+..|++.-+..+.|.|..+- .++ --=+-|+-+=++
T Consensus 13 a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv~nkq~~ 92 (136)
T PF11570_consen 13 ARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKDVQNKQNK 92 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999998665431 112 122347777777
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHH
Q 042473 198 FVKAHNRHSQMQDDLKRSQARLQK 221 (408)
Q Consensus 198 fvKah~r~~raQdeLKrsqaRl~k 221 (408)
|--|-.+...|++||-|.|+-|..
T Consensus 93 l~AA~~~l~~~~~el~~~~~al~~ 116 (136)
T PF11570_consen 93 LKAAQKELNAADEELNRIQAALSQ 116 (136)
T ss_dssp HHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHH
Confidence 777778888888888887776643
No 62
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.16 E-value=24 Score=34.85 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKE 186 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEke 186 (408)
....+-|+.++.+++++.+....+++.++.=-+++..+.+.|+++..|+.+-.+
T Consensus 27 ~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 27 KEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888888887777777777777777766665443
No 63
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=76.80 E-value=17 Score=36.62 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 042473 185 KEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 185 keeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl 222 (408)
+|-|.|||----++..++..-.++...+.-.+.+..+|
T Consensus 224 ~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 224 KEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555665555556666666666666666666666665
No 64
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=76.77 E-value=33 Score=37.06 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=10.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042473 170 LSSRIKELETQLQKEKEESKRIASKI 195 (408)
Q Consensus 170 Lssri~eLe~qL~kEkeeCkr~tSki 195 (408)
+..++..++.++...+++++.+...|
T Consensus 433 l~~~l~~~~~~~~~~~~~~~~~~~~i 458 (650)
T TIGR03185 433 AQNELFRSEAEIEELLRQLETLKEAI 458 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444334444333333
No 65
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=76.73 E-value=30 Score=31.60 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
-.-|.+++.|+..|+.+|-.|.-.|+++-..|+.|-+.+.++...|..
T Consensus 65 t~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 65 TSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334556777888888888888888888877777777777776666654
No 66
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.69 E-value=57 Score=32.84 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=43.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcccccCCCC
Q 042473 170 LSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSINIMSDEE 249 (408)
Q Consensus 170 Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~~k~g~needsSini~sd~e 249 (408)
+..++++|+.+|.. ...++.++-.....|.++|-|+.-++.-++.|-..+..--+..+. +.+.|-|+.-..
T Consensus 316 ~~~~~~~l~~~l~~-------~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~~~~--~~~~~~Vi~~a~ 386 (444)
T TIGR03017 316 LKQREAELREALEN-------QKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRIEAQS--NQTDISILNPAV 386 (444)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCceEeeCCCC
Confidence 34455555555554 334444555556677777777777777766666555332222211 345566664443
Q ss_pred CCCcccCCCC
Q 042473 250 TTNYHLVDPQ 259 (408)
Q Consensus 250 ~~~~~~~sp~ 259 (408)
+|. .++.|+
T Consensus 387 ~P~-~P~~P~ 395 (444)
T TIGR03017 387 PPL-EPSSPR 395 (444)
T ss_pred CCC-CCCCCc
Confidence 332 455554
No 67
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.66 E-value=37 Score=39.76 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
+++...+||++....+++|+++-.+|...+-.-...-..|..+...|+.+|..--.+|..+.+.+.+
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~ 508 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQ 508 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788777777777776666665554444444556666666666666655555555554443
No 68
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.52 E-value=24 Score=34.34 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEK 163 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK 163 (408)
+|..|.++|.+|+.||+.|+.--.+++...++.
T Consensus 47 Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 47 ERMAHVEELRQINQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555544444444433
No 69
>PRK15396 murein lipoprotein; Provisional
Probab=76.00 E-value=15 Score=30.74 Aligned_cols=48 Identities=23% Similarity=0.419 Sum_probs=34.5
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~ 223 (408)
+++.|++.|+.|..++..-..+-.-|.+.+.. |++|-.|+-.||+-++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~----------a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA----------AKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 56677777777777777766665555555443 8889999988887654
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.97 E-value=58 Score=32.18 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhh---------hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEE---------KGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~lee---------K~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
..+++.|..++++||..+++++..+|.-|.. =.+|++++..|+..|+.+|..-.++=+.+.-.|.-+...|
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888887776621 1356777778888888888877777777777666665555
No 71
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=75.63 E-value=60 Score=31.51 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=63.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhh-------------------hhhhHHHHhhHHHHHHHHHHH-------
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEK-------------------GQEADILSSRIKELETQLQKE------- 184 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK-------------------~~E~~~Lssri~eLe~qL~kE------- 184 (408)
+=+.||.|||++..=++.|..+-..|=..+.+= ...+..+..+|.+|....+-.
T Consensus 30 yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e 109 (234)
T cd07664 30 QFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFADFYLFSE 109 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 447899999999999999988877765554432 223333344555554333221
Q ss_pred -HHHHHHHHHHHHHH----HHHhhhhhhhhHHHHHHHHHHHHh
Q 042473 185 -KEESKRIASKIKKF----VKAHNRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 185 -keeCkr~tSkiKKf----vKah~r~~raQdeLKrsqaRl~kl 222 (408)
-+|--|+..-||-. +|++..|..||.+|.+-++.+.||
T Consensus 110 ~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl 152 (234)
T cd07664 110 LLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKL 152 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13445666666654 478899999999999999999998
No 72
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=75.25 E-value=35 Score=28.44 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHh-------hhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLED-------RKLQLETNEEEKGQEADILSSRIKELETQLQKEKE 186 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d-------~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEke 186 (408)
|.|=|-.|+.+.+.|-. ++..+|.-+...+.|+..|-..|-+||.+-.+-|+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~ 60 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777 88888888999999999999999999988777443
No 73
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.72 E-value=18 Score=33.39 Aligned_cols=90 Identities=26% Similarity=0.304 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHh-------HHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLET-------NEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH--- 202 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~-------~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah--- 202 (408)
.+++.++...+.|+..|...+++|.. .|++.-.++.....+|.+|+..+..-++.|+.+...|+..-|+.
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555555543 44444445555666777777777777777877777777776666
Q ss_pred -hhhhhhhHHHHHHHHHHHHh
Q 042473 203 -NRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 203 -~r~~raQdeLKrsqaRl~kl 222 (408)
--|+-.|-++...+.++.+|
T Consensus 150 ~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 150 QDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554
No 74
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=74.67 E-value=35 Score=36.61 Aligned_cols=94 Identities=20% Similarity=0.281 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEK-----------EESKRIASKIKKFVKA 201 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEk-----------eeCkr~tSkiKKfvKa 201 (408)
+.++++|.++..+++.+.+.-.+|.-.-++.-.++..|-.+-++|-.+|-... +.-..|-+..-+|...
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888877777776777766666554433332211 1112277777777776
Q ss_pred h--hhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 202 H--NRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 202 h--~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
- +.|+.|++-|...+..+..|.+.+
T Consensus 184 t~~GD~~~A~eil~~l~~~~~~l~~~~ 210 (560)
T PF06160_consen 184 TENGDYLEAREILEKLKEETDELEEIM 210 (560)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 789999999999888887776554
No 75
>PRK02119 hypothetical protein; Provisional
Probab=74.51 E-value=29 Score=28.21 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=36.5
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 165 QEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 165 ~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
.|...|..||.+||.+|+=-.+-+..+ -.-+.+-|.++-+-++.|..|++.|..
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~L----------N~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEEL----------NQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788999999999987644433332 223445565666667778888887755
No 76
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=74.42 E-value=7.6 Score=34.44 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=47.1
Q ss_pred cchhhccccCCCchhhhHHHHHHHHH---HHHHHHHhhhhhhHhHHhhhh----hhhHHHHhhHHHHHHHHHHHHHHHH
Q 042473 118 NDRVKERKFTPSDSKVVLLEQLKEVQ---LDINVLEDRKLQLETNEEEKG----QEADILSSRIKELETQLQKEKEESK 189 (408)
Q Consensus 118 ~d~~Kd~k~~~s~~k~~leeQLk~v~---~D~~~L~d~Ks~LE~~leeK~----~E~~~Lssri~eLe~qL~kEkeeCk 189 (408)
|+-||.|+.+.--.|....+=|++++ -+++. ....+++++|+.-- -|+..|.+||..||.||++-+++-+
T Consensus 31 DelVkkGeln~eEak~~vddl~~q~k~~~~e~e~--K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 31 DELVKKGELNAEEAKRFVDDLLRQAKEAQGELEE--KIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHH--hhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57788888776655655554444444 33322 25567777776543 4778999999999999998666543
No 77
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.23 E-value=34 Score=39.58 Aligned_cols=91 Identities=21% Similarity=0.344 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH------------ 202 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah------------ 202 (408)
++.++.++.-.+..|..+-.+|+..++.-......+..++.+|+.++...+.+|...-..+..+...+
T Consensus 388 ~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 467 (1163)
T COG1196 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER 467 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444443333333333333332222
Q ss_pred ------hhhhhhhHHHHHHHHHHHHhhhh
Q 042473 203 ------NRHSQMQDDLKRSQARLQKLGYH 225 (408)
Q Consensus 203 ------~r~~raQdeLKrsqaRl~kl~d~ 225 (408)
...-++..+|+..++++.+|...
T Consensus 468 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 468 ELAELQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333445555566666665553
No 78
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=74.16 E-value=21 Score=28.38 Aligned_cols=47 Identities=17% Similarity=0.410 Sum_probs=33.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~ 223 (408)
++.|++-|+.|-.++..-..+-.-|.+-+ ..|++|..|+-.||.-++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v----------~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADV----------QAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhH
Confidence 46677777777777777555544454433 479999999999998665
No 79
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=73.93 E-value=45 Score=39.16 Aligned_cols=92 Identities=26% Similarity=0.322 Sum_probs=69.8
Q ss_pred hhhhHHHHHHHHHHHHH-------HHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 042473 131 SKVVLLEQLKEVQLDIN-------VLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFV-KAH 202 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~-------~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfv-Kah 202 (408)
.=+.++.||+++....- .|..+|.+|+..|+.+..|+..+.+.++++..+|..+-+ ++++..+.. +++
T Consensus 456 el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~----ii~~~~~se~~l~ 531 (1041)
T KOG0243|consen 456 ELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEE----IISQQEKSEEKLV 531 (1041)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34667778888877765 889999999999999999999999999999999876543 677766653 455
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 203 NRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 203 ~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
.+-...|-.|.-||-.+.-|...|
T Consensus 532 ~~a~~l~~~~~~s~~d~s~l~~kl 555 (1041)
T KOG0243|consen 532 DRATKLRRSLEESQDDLSSLFEKL 555 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777666554433
No 80
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=73.75 E-value=21 Score=34.62 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=64.0
Q ss_pred chhhccccCCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 042473 119 DRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK-- 196 (408)
Q Consensus 119 d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK-- 196 (408)
|.++.|-....=+...++.+|.+.+..+..+..+-.+++... +..|+..+...+..++.+|...+.+-+|+-.-.+
T Consensus 63 d~V~kG~~L~~ld~~~~~~~l~~~~a~l~~~~~~l~~~~~~~--~~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g 140 (331)
T PRK03598 63 DAVKAGQVLGELDAAPYENALMQAKANVSVAQAQLDLMLAGY--RDEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSR 140 (331)
T ss_pred CEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 667777665555667788889998888888887766555332 2345556666677777777776666666543222
Q ss_pred -----HHHHHhhhhhhhhHHHHHHHHHHHHh
Q 042473 197 -----KFVKAHNRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 197 -----KfvKah~r~~raQdeLKrsqaRl~kl 222 (408)
.|-.+...|..|+..++.+++++..+
T Consensus 141 ~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 171 (331)
T PRK03598 141 TISANDLENARSSRDQAQATLKSAQDKLSQY 171 (331)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555655555555555443
No 81
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.74 E-value=16 Score=36.84 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccC
Q 042473 210 DDLKRSQARLQKLGYHLGLDATKV 233 (408)
Q Consensus 210 deLKrsqaRl~kl~d~l~sd~~k~ 233 (408)
.|+.+=+++|+.|=.+..--|++.
T Consensus 271 ~Ei~~Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 271 KEIEKLKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHHHHHHhCCeeEec
Confidence 356666677777766666665555
No 82
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.63 E-value=45 Score=36.05 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=12.2
Q ss_pred hhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 152 RKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 152 ~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
.+..++..+.+-..+...+..++..|+.++..
T Consensus 429 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 460 (650)
T TIGR03185 429 ELGEAQNELFRSEAEIEELLRQLETLKEAIEA 460 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344433333333
No 83
>PRK10132 hypothetical protein; Provisional
Probab=73.54 E-value=35 Score=29.77 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=41.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHH----hhhhhhhHHHHhhHH----HHHHHHH---HHHHHHHHHHHHHHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNE----EEKGQEADILSSRIK----ELETQLQ---KEKEESKRIASKIKKF 198 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~l----eeK~~E~~~Lssri~----eLe~qL~---kEkeeCkr~tSkiKKf 198 (408)
+..+++++|..++..||..|.++- |-.| +....|+..|-.|+. ..-.+|. ...+.|+.++..+.-|
T Consensus 5 ~~~~~~~~q~e~L~~Dl~~L~~~l---e~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~ 81 (108)
T PRK10132 5 PNRNDVDDGVQDIQNDVNQLADSL---ESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTF 81 (108)
T ss_pred CccchhhhHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 455789999999999999998764 4334 333345555555543 3332333 2233466666666666
Q ss_pred HHHh
Q 042473 199 VKAH 202 (408)
Q Consensus 199 vKah 202 (408)
|..|
T Consensus 82 V~~~ 85 (108)
T PRK10132 82 VRER 85 (108)
T ss_pred HHhC
Confidence 6554
No 84
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=73.17 E-value=64 Score=28.22 Aligned_cols=100 Identities=22% Similarity=0.311 Sum_probs=60.1
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhhhhhhH----hHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HH
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDRKLQLE----TNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK----KF 198 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE----~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK----Kf 198 (408)
+.++.--++..+|+.+.-||+.|..+-.++= .-|=..+.-+..+.+-++.+..++..-..-++||-.+|- +.
T Consensus 23 ~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~ 102 (132)
T PF10392_consen 23 NNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKI 102 (132)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4455667899999999999998887644331 123334445566666777777777777777777776541 12
Q ss_pred HHHhhhhhhhhH--HHHHHHHHHHHhhhhh
Q 042473 199 VKAHNRHSQMQD--DLKRSQARLQKLGYHL 226 (408)
Q Consensus 199 vKah~r~~raQd--eLKrsqaRl~kl~d~l 226 (408)
.+....+-++|. +|=|+=+||..|+..|
T Consensus 103 ~~~~~~L~rl~~t~~LLR~~~r~l~L~~rL 132 (132)
T PF10392_consen 103 QKLTSQLERLHQTSDLLRSVSRFLQLVRRL 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 222222222222 3445556777666554
No 85
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=73.13 E-value=51 Score=38.26 Aligned_cols=54 Identities=11% Similarity=0.335 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 174 IKELETQLQKEKEESKRIASKIKKFVKAH----NRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 174 i~eLe~qL~kEkeeCkr~tSkiKKfvKah----~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
+..|+..+..-...++.++..+..+-.++ .++..++.+|+.-+.+.++|...+.
T Consensus 774 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~ 831 (1163)
T COG1196 774 LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444333333 2333444444444444444444443
No 86
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=72.35 E-value=44 Score=37.95 Aligned_cols=96 Identities=22% Similarity=0.361 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILS-------SRIKELETQLQKEKEESKRIASKIKKF------ 198 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Ls-------sri~eLe~qL~kEkeeCkr~tSkiKKf------ 198 (408)
-+.+..++++....+..|.-+-+..++.|+.--+++++|+ |+|.-|+-.|.+-+++|-.|-+.++|.
T Consensus 467 le~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~ 546 (775)
T PF10174_consen 467 LETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAEL 546 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhh
Confidence 3566777888888888888888888888888888998887 488999999999999999999999881
Q ss_pred ----HHHhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 199 ----VKAHNRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 199 ----vKah~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
..+=....+.-+++-.||+-++||-+.|-
T Consensus 547 ~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~ 579 (775)
T PF10174_consen 547 RDRIQQLEQEVTRYREESEKAQAEVERLLDILR 579 (775)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11113334556788888988888876553
No 87
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=71.78 E-value=60 Score=33.47 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=20.6
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhcc
Q 042473 200 KAHNRHSQMQDDLKRSQARLQKLGYHLGLDATK 232 (408)
Q Consensus 200 Kah~r~~raQdeLKrsqaRl~kl~d~l~sd~~k 232 (408)
.+-..+-.++.+|..+++.|...-+.|.--.++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~ 320 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGVIK 320 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 344556667777777777777777766443333
No 88
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.65 E-value=18 Score=38.40 Aligned_cols=91 Identities=24% Similarity=0.315 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhhHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH----NRHSQMQDD 211 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah----~r~~raQde 211 (408)
+.||++++.||+.+.. .+...-++..+|.+-|.+||..++.-..+-.+....++++-+=- .+..+++..
T Consensus 37 ~~~l~q~q~ei~~~~~-------~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 37 DKQLKQIQKEIAALEK-------KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 3788888888876543 33344445556666666666666665555555555555544322 222223322
Q ss_pred HHHHHHHHHHhhhhhhhhhccCCCCC
Q 042473 212 LKRSQARLQKLGYHLGLDATKVGGNE 237 (408)
Q Consensus 212 LKrsqaRl~kl~d~l~sd~~k~g~ne 237 (408)
. .++..+|+-+|+.. -..|-|.
T Consensus 110 ~---r~qr~~La~~L~A~-~r~g~~p 131 (420)
T COG4942 110 E---REQRRRLAEQLAAL-QRSGRNP 131 (420)
T ss_pred H---HHHHHHHHHHHHHH-HhccCCC
Confidence 2 57777888888776 4444443
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=71.48 E-value=77 Score=32.08 Aligned_cols=94 Identities=22% Similarity=0.345 Sum_probs=54.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh--
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKE-----ESKRIASKIKKFVKAH-- 202 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEke-----eCkr~tSkiKKfvKah-- 202 (408)
+.++.|++.+..++.|-..|..+...|.-++..=.+.-..|...++.|. ++..|-+ +=.++=.++++....+
T Consensus 144 gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~-~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~ 222 (312)
T smart00787 144 GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLK-QLEDELEDCDPTELDRAKEKLKKLLQEIMI 222 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888887777777766665555555555555543 2233322 3344445555554444
Q ss_pred --hhhhhhhHHHHHHHHHHHHhhh
Q 042473 203 --NRHSQMQDDLKRSQARLQKLGY 224 (408)
Q Consensus 203 --~r~~raQdeLKrsqaRl~kl~d 224 (408)
+-....|++|....++++....
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~~~ 246 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDLTN 246 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555554443
No 90
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=71.35 E-value=48 Score=33.06 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHH---HHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEK---EESKRI 191 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEk---eeCkr~ 191 (408)
..+.++|.+...+|.+++..-.+|+.-|+....++..++.++.+|..+++..+ ++|+..
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~ 273 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGW 273 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455666666666666666666666666666666666666666666655433 445443
No 91
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=71.04 E-value=70 Score=35.23 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=18.5
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhh
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDR 152 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~ 152 (408)
......+-|++||.+++.+++..+..
T Consensus 264 ~a~~a~~fL~~qL~~l~~~L~~aE~~ 289 (726)
T PRK09841 264 QDSQSLEFLQRQLPEVRSELDQAEEK 289 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555688888888888888665443
No 92
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=70.40 E-value=8.9 Score=34.51 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=47.8
Q ss_pred hhhccccCCCchhhhHHHHHHHHHHHH--------HHHHhhhhhhHhHHhhhh------------hhhHHHHhhHHHHHH
Q 042473 120 RVKERKFTPSDSKVVLLEQLKEVQLDI--------NVLEDRKLQLETNEEEKG------------QEADILSSRIKELET 179 (408)
Q Consensus 120 ~~Kd~k~~~s~~k~~leeQLk~v~~D~--------~~L~d~Ks~LE~~leeK~------------~E~~~Lssri~eLe~ 179 (408)
=||+|......-+...++++..+...| .....+...||.++|+.+ +|+..|+.||..|+.
T Consensus 44 LVk~Ge~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~ 123 (132)
T PF05597_consen 44 LVKEGEKLEKKTRKKAEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTA 123 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 355665566666778888888777333 344556677999999865 688999999999999
Q ss_pred HHHH
Q 042473 180 QLQK 183 (408)
Q Consensus 180 qL~k 183 (408)
+|.+
T Consensus 124 ~v~~ 127 (132)
T PF05597_consen 124 QVER 127 (132)
T ss_pred HHHH
Confidence 9976
No 93
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=69.99 E-value=61 Score=40.40 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=34.5
Q ss_pred HHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 146 INVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 146 ~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
.+.|...|..||..|.+.-.++.....+..+|+.|..+.+++|.-+...+.-.
T Consensus 896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~ 948 (1930)
T KOG0161|consen 896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEEL 948 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666666666666666666666665533
No 94
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=69.97 E-value=87 Score=29.07 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=60.8
Q ss_pred hhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------hhhhhhhhHHHHHHHHHHHHhh
Q 042473 152 RKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKK-FVKA-------HNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 152 ~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK-fvKa-------h~r~~raQdeLKrsqaRl~kl~ 223 (408)
+-..++..+-..+.++..+-..|..+=.+-..-+-+|.++-.++.| ..+. -..+.+|+.+|..|+..|+.|-
T Consensus 90 ~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN 169 (216)
T cd07599 90 ELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALN 169 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666777777777777777766777778888889998888 5544 3568899999999999999999
Q ss_pred hhhhhhh
Q 042473 224 YHLGLDA 230 (408)
Q Consensus 224 d~l~sd~ 230 (408)
++|..++
T Consensus 170 ~~Lk~eL 176 (216)
T cd07599 170 ELLKSEL 176 (216)
T ss_pred HHHHHHh
Confidence 9987764
No 95
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=69.78 E-value=43 Score=35.65 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=47.9
Q ss_pred HhhhhhhhHHHHhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhccC
Q 042473 160 EEEKGQEADILSSRIKELETQLQKEKEESK------RIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKV 233 (408)
Q Consensus 160 leeK~~E~~~Lssri~eLe~qL~kEkeeCk------r~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~~k~ 233 (408)
+....-.+..|..+|.-||.||..|+..-- .++..+-.|-..-...-=||+.++-|.+-||. .+.
T Consensus 309 ~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~---------AR~ 379 (434)
T PRK15178 309 GLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQ---------GKL 379 (434)
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Confidence 344456677888999999999999877642 34445555555544444466666655555543 444
Q ss_pred CCCCCCCcccccCC
Q 042473 234 GGNEEDSSINIMSD 247 (408)
Q Consensus 234 g~needsSini~sd 247 (408)
.|+-+.--+-++..
T Consensus 380 EA~RQ~~YL~~iv~ 393 (434)
T PRK15178 380 QALRERQYLLIISQ 393 (434)
T ss_pred HHHhhhhheeeeeC
Confidence 45555555544433
No 96
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=69.67 E-value=54 Score=40.83 Aligned_cols=64 Identities=23% Similarity=0.389 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
.++.+|+..+..|.-|..+|..|+..|..|-.|+..|.+++.++...+..-+..-+.+.++|+.
T Consensus 1045 kle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~e 1108 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKE 1108 (1930)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666667777777777777777777777777777666665544444444444443
No 97
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=69.63 E-value=64 Score=37.20 Aligned_cols=99 Identities=8% Similarity=0.131 Sum_probs=69.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhh----h------hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 128 PSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEE----K------GQEADILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 128 ~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~lee----K------~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
+....+.+++++.+....+..+.....+++..|+. + -.++..|...+..|+..+..-...+-.+.+.++.
T Consensus 775 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 854 (1047)
T PRK10246 775 DEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQ 854 (1047)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666665555555555544554 3 2356668888899999998888899999999999
Q ss_pred HHHHhhhhhhhhHHHHHHH---HHHHHhhhhh
Q 042473 198 FVKAHNRHSQMQDDLKRSQ---ARLQKLGYHL 226 (408)
Q Consensus 198 fvKah~r~~raQdeLKrsq---aRl~kl~d~l 226 (408)
....+.++-..++++...+ ..+..|.+.+
T Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 886 (1047)
T PRK10246 855 DADNRQQQQALMQQIAQATQQVEDWGYLNSLI 886 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888888888 4555555543
No 98
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=69.54 E-value=44 Score=36.65 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEE-------SKRIASKIKKFVKA 201 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkee-------Ckr~tSkiKKfvKa 201 (408)
-.+++|-+.|-.|+++|..+ ++ .|.++|.||.+|++.|.+|+.+-..-+.+ -..|-+|+.++.-+
T Consensus 260 ~~f~~~~~~i~~~i~~lk~~---n~-~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~ 331 (622)
T COG5185 260 LGFEKFVHIINTDIANLKTQ---ND-NLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGK 331 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchH
Confidence 34567777888888888544 44 35689999999999999999886654433 34566666555433
No 99
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=68.92 E-value=75 Score=30.47 Aligned_cols=64 Identities=13% Similarity=0.284 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKI 195 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSki 195 (408)
-+.++.+|..+..|++.|..+-...-.--+.-...+..+..+..+|+..+..-...-+-|.+++
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888776655555555555666666666666666666444433343333
No 100
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.90 E-value=73 Score=29.87 Aligned_cols=98 Identities=21% Similarity=0.334 Sum_probs=68.6
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhh
Q 042473 128 PSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH-NRHS 206 (408)
Q Consensus 128 ~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah-~r~~ 206 (408)
+|.....++.++..+..+++.++.....|+..|+.-.. .+.-+..-+.|-.+|..-+.+++.+...+.+|.+.= ..+-
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~-~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK-GREESEEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 45667788888999999999998888888887776522 222222333455566666667777777777665543 5677
Q ss_pred hhhHHHHHHHHHHHHhhhhh
Q 042473 207 QMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 207 raQdeLKrsqaRl~kl~d~l 226 (408)
+.+++++.+..-..+..|-+
T Consensus 139 ~~~~~~~~~~~~anrwTDNI 158 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWTDNI 158 (188)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 78888888888888887753
No 101
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=68.74 E-value=44 Score=39.27 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=50.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHh------------------------hHHHHHHHHHHH
Q 042473 129 SDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSS------------------------RIKELETQLQKE 184 (408)
Q Consensus 129 s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lss------------------------ri~eLe~qL~kE 184 (408)
...++..|+-|++++..|..|..+-.+++..+..+..|+..|.. .|.+.|.++.+.
T Consensus 681 ~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l 760 (1074)
T KOG0250|consen 681 ENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKL 760 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888877777777766666666555555544 345555667777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 042473 185 KEESKRIASKIKKFVKAH 202 (408)
Q Consensus 185 keeCkr~tSkiKKfvKah 202 (408)
+++-+.+.....+.+.-|
T Consensus 761 ~~e~e~~~~e~~e~~~~~ 778 (1074)
T KOG0250|consen 761 KEELEHIELEAQELEEYY 778 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888877777776666
No 102
>PRK00106 hypothetical protein; Provisional
Probab=68.49 E-value=60 Score=35.38 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=12.3
Q ss_pred ccccccCCCCCCcccccc
Q 042473 272 KLHVDRDTTNGFVPEANL 289 (408)
Q Consensus 272 r~~~~~~t~e~~~~~~~~ 289 (408)
|+.++.-|.+....||++
T Consensus 277 RReiAr~~le~Li~dgrI 294 (535)
T PRK00106 277 RREIARMTLESLIKDGRI 294 (535)
T ss_pred HHHHHHHHHHHHHHcCCc
Confidence 345777777777777776
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=68.38 E-value=67 Score=35.96 Aligned_cols=68 Identities=15% Similarity=0.296 Sum_probs=41.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhhhHh--------------HHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042473 128 PSDSKVVLLEQLKEVQLDINVLEDRKLQLET--------------NEEEKGQEADILSSRIKELETQLQKEKEESKRIAS 193 (408)
Q Consensus 128 ~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~--------------~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tS 193 (408)
..+....||..+|.++.|+.+.+..-..|.. .|...-.|.+.|-.|+..|..+..++|....-|--
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEk 495 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEK 495 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455568999999999998554433332222 25555666667777776666666666655544444
Q ss_pred HH
Q 042473 194 KI 195 (408)
Q Consensus 194 ki 195 (408)
|+
T Consensus 496 rL 497 (697)
T PF09726_consen 496 RL 497 (697)
T ss_pred HH
Confidence 43
No 104
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=68.10 E-value=60 Score=38.28 Aligned_cols=84 Identities=17% Similarity=0.300 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhhHHHHH
Q 042473 139 LKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH----NRHSQMQDDLKR 214 (408)
Q Consensus 139 Lk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah----~r~~raQdeLKr 214 (408)
|+.....+...++....|+.-++++......+..++++.|.|++.-+++-..+.+.|+-+.+.. ..|..++++...
T Consensus 283 l~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~ 362 (1074)
T KOG0250|consen 283 LNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIRE 362 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445556666677777777777788888889999999998888888888877666554 335556666666
Q ss_pred HHHHHHHh
Q 042473 215 SQARLQKL 222 (408)
Q Consensus 215 sqaRl~kl 222 (408)
+|...+++
T Consensus 363 ~~n~i~~~ 370 (1074)
T KOG0250|consen 363 IENSIRKL 370 (1074)
T ss_pred HHHHHHHH
Confidence 66655544
No 105
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.98 E-value=17 Score=35.60 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=42.5
Q ss_pred HhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh--hhhh
Q 042473 150 EDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF----VKAH--NRHS 206 (408)
Q Consensus 150 ~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf----vKah--~r~~ 206 (408)
..+-+-|-|+--.. |..-.|+.|||.+|.+.++++.-+...|.++ ||.| .||+
T Consensus 75 ~~~~siLpIVtsQR----DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 75 GGDSSILPIVTSQR----DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred CCcccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777 8999999999999999999999998888887 6666 3444
No 106
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=67.59 E-value=1.2e+02 Score=28.98 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
|.+++++...+..+...--.||+..++-.+-.+.+-.+|..|+.+|
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3333334444433333333444443333333333333333333333
No 107
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=67.55 E-value=34 Score=26.93 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=44.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKIKKFVKAHN------RHSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~------r~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
.++..+|.+|+-+|..|.. +-.-+.+++++|. -...||..|.-|..+++.|-.+|.-
T Consensus 5 ~~~~~~l~~L~~~l~~E~~----~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k 67 (72)
T cd00089 5 SKLQSRLERLEKELSIELK----VKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEK 67 (72)
T ss_pred chHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999865 3444567777772 3668999999999999999887753
No 108
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=66.87 E-value=1.4e+02 Score=33.66 Aligned_cols=63 Identities=16% Similarity=0.337 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhhhhh---hHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 137 EQLKEVQLDINVLEDRKLQ---LETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~---LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
.....++.||+.|+-+-.. +|..|-.+| ..|.+=-..|=..|..-+.+|.-|=.|+-.++++.
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqi---s~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR 483 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQI---SSLTNNERSLKSELSQLRQENEQLQNKLQNLVQAR 483 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH---hhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666655332 222222221 12222122344457777788888888888888876
No 109
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.61 E-value=68 Score=37.71 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=59.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF----------V 199 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf----------v 199 (408)
+....+++.++++....+.|..-+.....+.+....++-.|..++.+|+.+|...+.+=..+-..+.++ .
T Consensus 709 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~ 788 (1311)
T TIGR00606 709 DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCL 788 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345566666666666666666655555555555445566666666666666665554333333333322 2
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 200 KAHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 200 Kah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
+--..+.++..+++..+.+++.|...+.+.
T Consensus 789 ~~v~~i~r~~~ei~~l~~qie~l~~~l~~~ 818 (1311)
T TIGR00606 789 TDVTIMERFQMELKDVERKIAQQAAKLQGS 818 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 233445777888888888888887777643
No 110
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.47 E-value=1.2e+02 Score=30.50 Aligned_cols=88 Identities=23% Similarity=0.326 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRS 215 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrs 215 (408)
.+.++++..+++.|..+...|...|++=-.|-..|...+.+|+.++..-+++=.+.-...-.|-.....+....+.|+..
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666665555555555666666666666665554444455555566666666666655555543
Q ss_pred ----HHHHHHhh
Q 042473 216 ----QARLQKLG 223 (408)
Q Consensus 216 ----qaRl~kl~ 223 (408)
+..|++|=
T Consensus 122 ~~~~~~~L~~L~ 133 (314)
T PF04111_consen 122 YEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHCHH
T ss_pred HHHHHHHHHHHH
Confidence 44444443
No 111
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=66.27 E-value=33 Score=32.45 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKR 190 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr 190 (408)
++..+|+.+++++.-|-.|+++...|....+.+..|+..|.+.++.|+..+...+-+.+-
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555666555555555555555555555555555555554444333
No 112
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=66.03 E-value=48 Score=33.25 Aligned_cols=86 Identities=27% Similarity=0.321 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDL 212 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeL 212 (408)
...+++|++++..+..|++.-..|+..+++.+.|...|...+...+.+|... ..=|.-|---+.|+..--++|
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA-------~~Li~~L~~E~~RW~~~~~~l 303 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA-------EKLISGLSGEKERWSEQIEEL 303 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHCCHHHHHCCHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH-------HHHHhhhcchhhhHHHHHHHH
Confidence 4455666666666666666666666666666555555555555555554441 111222223445555555555
Q ss_pred HHHHHHHHHhhhhhh
Q 042473 213 KRSQARLQKLGYHLG 227 (408)
Q Consensus 213 KrsqaRl~kl~d~l~ 227 (408)
+.....| +||-|.
T Consensus 304 ~~~~~~l--~GD~ll 316 (344)
T PF12777_consen 304 EEQLKNL--VGDSLL 316 (344)
T ss_dssp HHHHHHH--HHHHHH
T ss_pred HHHhccc--HHHHHH
Confidence 5544444 455543
No 113
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=65.72 E-value=54 Score=33.23 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=56.1
Q ss_pred cCCCCcchhhccccCCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042473 113 ISDGINDRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIA 192 (408)
Q Consensus 113 ~sd~~~d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~t 192 (408)
|.+| |.||.|-...-=+...++.+|.+.+.++.....+..++.+.++ .+...+...+.+|...+.+-+|+.
T Consensus 77 V~~G--d~VkkGqvL~~LD~~~~~~~l~~A~a~l~~a~~~~~~~~~~~~-------~~~a~l~~a~a~l~~a~~~~~R~~ 147 (390)
T PRK15136 77 ADNT--DFVKEGDVLVTLDPTDAEQAFEKAKTALANSVRQTHQLMINSK-------QYQANIELQKTALAQAQSDLNRRV 147 (390)
T ss_pred cCCC--CEECCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 7788777655555567888888888887765544433333221 233445555555555555555543
Q ss_pred HHH-------HHHHHHhhhhhhhhHHHHHHHHHHHH
Q 042473 193 SKI-------KKFVKAHNRHSQMQDDLKRSQARLQK 221 (408)
Q Consensus 193 Ski-------KKfvKah~r~~raQdeLKrsqaRl~k 221 (408)
.-. ..|-.+...|..|+.+|..+++.|..
T Consensus 148 ~L~~~g~iS~~~ld~a~~~~~~a~a~l~~a~~~l~~ 183 (390)
T PRK15136 148 PLGNANLIGREELQHARDAVASAQAQLDVAIQQYNA 183 (390)
T ss_pred HHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23444555566666666665555544
No 114
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=65.71 E-value=31 Score=33.30 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRI--KELETQLQKEKEESKRIASKIKKFVKA 201 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri--~eLe~qL~kEkeeCkr~tSkiKKfvKa 201 (408)
.-+.|..+..+|-+|.+++-.|.-..--=-.|+..|+|-+ .++-..+++-+++|+.+--++++|--+
T Consensus 77 ~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 77 SDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888888888888877666544333333444555543 345556778899999999999998544
No 115
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=65.70 E-value=3.1 Score=27.86 Aligned_cols=19 Identities=37% Similarity=1.001 Sum_probs=16.8
Q ss_pred hhhhcccC-CCCCCCCCccc
Q 042473 11 ICVLYQKG-RCSRPTCSFAH 29 (408)
Q Consensus 11 LC~~f~~G-~C~~~~C~FAH 29 (408)
||.+...| .|.-..|.|-|
T Consensus 2 lC~yEl~Gg~Cnd~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCNDPDCEFQH 21 (23)
T ss_pred CCccccCCCeeCCCCCCccc
Confidence 78888775 99999999998
No 116
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=65.70 E-value=62 Score=33.31 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhhhHhHHhhh-hhhhHHHHhhHHHHHH
Q 042473 144 LDINVLEDRKLQLETNEEEK-GQEADILSSRIKELET 179 (408)
Q Consensus 144 ~D~~~L~d~Ks~LE~~leeK-~~E~~~Lssri~eLe~ 179 (408)
--+..|+++|.+||..|+.. --.|.+|..+|..|+.
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34456667777777777653 2446667777776664
No 117
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.66 E-value=82 Score=34.39 Aligned_cols=78 Identities=10% Similarity=0.071 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcccccCCCCCC
Q 042473 172 SRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSINIMSDEETT 251 (408)
Q Consensus 172 sri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~~k~g~needsSini~sd~e~~ 251 (408)
.+.+.|+.||+. +.+++..+-..-..|.++|-|..-++.-++-|-..+----+. .+-..+.|-|++.-..+
T Consensus 352 ~~~~~L~~~l~~-------~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~--~~~~~~~~~vi~~A~~P 422 (754)
T TIGR01005 352 ARESQLVSDVNQ-------LKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASR--QNYVPVDARVASPASVP 422 (754)
T ss_pred HHHHHHHHHHHH-------HHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCcEEeccCcCC
Confidence 334444555554 344444444444555566666655555555544444322111 13456677777554444
Q ss_pred CcccCCCC
Q 042473 252 NYHLVDPQ 259 (408)
Q Consensus 252 ~~~~~sp~ 259 (408)
..++.|+
T Consensus 423 -~~P~~P~ 429 (754)
T TIGR01005 423 -SEPYFPK 429 (754)
T ss_pred -CCCCCCc
Confidence 3677776
No 118
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=64.94 E-value=46 Score=33.35 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=35.9
Q ss_pred hhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 042473 155 QLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 155 ~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl 222 (408)
.+|..|.+-| ..+.+.|..+..+|..-..++..+..||+|- .-||-|+|.||+.|
T Consensus 162 ~iE~~l~~ai---~~~~~~~~~~~~~l~~l~~de~~Le~KIekk----------k~ELER~qKRL~sL 216 (267)
T PF10234_consen 162 EIEKALKEAI---KAVQQQLQQTQQQLNNLASDEANLEAKIEKK----------KQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 3444444443 4456778888888888888888888888752 34555555555544
No 119
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.81 E-value=43 Score=39.41 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHS------- 206 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~------- 206 (408)
-+.++|++...-+..+..+-..+....+..+.|...+...+..||-.+.+-+.+-+-+.-+|.++++-|-..-
T Consensus 868 ~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fg 947 (1174)
T KOG0933|consen 868 KAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFG 947 (1174)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhc
Confidence 3444444444444444444444455666666666777777777777776666666666667777777764433
Q ss_pred --------------hhhHHHHHHHHHHHHhhh
Q 042473 207 --------------QMQDDLKRSQARLQKLGY 224 (408)
Q Consensus 207 --------------raQdeLKrsqaRl~kl~d 224 (408)
+|.++|++-|-++++|..
T Consensus 948 k~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k 979 (1174)
T KOG0933|consen 948 KKGTDYDFESYDPHEAREELKKLQEKKEKLEK 979 (1174)
T ss_pred CCCCccccccCCHhHHHHHHHHhhHHHHHHHh
Confidence 688888888888887754
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=64.58 E-value=75 Score=34.08 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhH------------------HHHHHHHHHHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRI------------------KELETQLQKEKEESKRIAS 193 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri------------------~eLe~qL~kEkeeCkr~tS 193 (408)
=+.++++|.++..++..+.+.-.+|-..-++.-.++..|-.+- ..||.||.. |-.
T Consensus 107 ~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~-------~e~ 179 (569)
T PRK04778 107 INEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLEN-------LEE 179 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHH-------HHH
Confidence 3566777777777777777777777666666656665555443 456666666 666
Q ss_pred HHHHHHHHh--hhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 194 KIKKFVKAH--NRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 194 kiKKfvKah--~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
...+|+.+= +.|++|++-|...+..+..|.+.+
T Consensus 180 ~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~ 214 (569)
T PRK04778 180 EFSQFVELTESGDYVEAREILDQLEEELAALEQIM 214 (569)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665 788888888888887777666543
No 121
>PRK01156 chromosome segregation protein; Provisional
Probab=64.53 E-value=96 Score=34.47 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=10.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKI 195 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSki 195 (408)
..+...+.++..++...++++..+-..|
T Consensus 632 e~~~~~l~~~~~~i~~~~~~i~~l~~~i 659 (895)
T PRK01156 632 NNKYNEIQENKILIEKLRGKIDNYKKQI 659 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444344443333333
No 122
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.41 E-value=84 Score=36.98 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKR 214 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKr 214 (408)
..+.|+.+..++..-......-...|....+++..+..++..++.++..-+++|+.+..+|..+-....++......+..
T Consensus 187 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~ 266 (1311)
T TIGR00606 187 ALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMK 266 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666644433333333344446677788888888888888888888888777766655544444444333333
Q ss_pred HHHHH
Q 042473 215 SQARL 219 (408)
Q Consensus 215 sqaRl 219 (408)
.++++
T Consensus 267 l~~ql 271 (1311)
T TIGR00606 267 LDNEI 271 (1311)
T ss_pred HHHHH
Confidence 33333
No 123
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=63.93 E-value=1.3e+02 Score=28.18 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
.++.+.+..+..|++.-.++...++.+-.++..+...+......|
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433333333
No 124
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.79 E-value=22 Score=34.37 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 184 EKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 184 EkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
..+++--|.++|+|+||+.+.++.|+.++-.|+--|-..-..|.
T Consensus 7 ~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~ 50 (215)
T cd07601 7 FEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYE 50 (215)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555569999999999999999999999999998887766663
No 125
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.76 E-value=81 Score=37.31 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh---------------hhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKL---------------QLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFV 199 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks---------------~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfv 199 (408)
+.|++.+-..+|+.|.++.. .|+..|+.+.+++....+.+.-+...|++|++.-+-|-+.|...-
T Consensus 263 l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~ 342 (1174)
T KOG0933|consen 263 LDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDR 342 (1174)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH
Confidence 44455555555555555444 455567777778888888999999999999999999988876543
Q ss_pred HH----hhhhhhhhHHHHHHHHHHHHhhh
Q 042473 200 KA----HNRHSQMQDDLKRSQARLQKLGY 224 (408)
Q Consensus 200 Ka----h~r~~raQdeLKrsqaRl~kl~d 224 (408)
++ -+++-+.++....-+-.++++..
T Consensus 343 ~~l~~k~~~~~~~~~~~~~~ke~~~~~s~ 371 (1174)
T KOG0933|consen 343 KKLKEKEKAMAKVEEGYEKLKEAFQEDSK 371 (1174)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 33 35555555544444444444333
No 126
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.71 E-value=95 Score=31.87 Aligned_cols=77 Identities=26% Similarity=0.373 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhh--hhhHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKG--QEADI--LSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQM 208 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~--~E~~~--Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~ra 208 (408)
--||.||.|+.+-+.-|.-+-.+|-..++... .|... -.-.+.-||--|+.-++-|.-+--.|+++ -+|
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReL-------EQa 120 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIREL-------EQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHh
Confidence 45777888887777776666555544443222 22221 12233344444444444444444444443 355
Q ss_pred hHHHHHHH
Q 042473 209 QDDLKRSQ 216 (408)
Q Consensus 209 QdeLKrsq 216 (408)
-|+|.||.
T Consensus 121 NDdLErak 128 (333)
T KOG1853|consen 121 NDDLERAK 128 (333)
T ss_pred ccHHHHhh
Confidence 56666654
No 127
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.59 E-value=1.8e+02 Score=29.68 Aligned_cols=73 Identities=22% Similarity=0.438 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQ 216 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsq 216 (408)
+..+.+=--+--|..+|+.| +-+|+-|..++.+||.+|..-+.+|+ -|++-|-..-.-+..++.++.--+
T Consensus 91 ekyrkAMv~naQLDNek~~l-------~yqvd~Lkd~lee~eE~~~~~~re~~---eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 91 EKYRKAMVSNAQLDNEKSAL-------MYQVDLLKDKLEELEETLAQLQREYR---EKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHhhhchHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333445567777766 45778899999999999998888875 344443322222333344444444
Q ss_pred HHH
Q 042473 217 ARL 219 (408)
Q Consensus 217 aRl 219 (408)
+-|
T Consensus 161 e~L 163 (302)
T PF09738_consen 161 EQL 163 (302)
T ss_pred HHH
Confidence 444
No 128
>PRK01156 chromosome segregation protein; Provisional
Probab=63.33 E-value=1.1e+02 Score=34.17 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=6.9
Q ss_pred CCCcccCcccccCCCC
Q 042473 24 TCSFAHGDAELRRPFR 39 (408)
Q Consensus 24 ~C~FAHGe~ELR~~~~ 39 (408)
.+.|..|.-=+-++.+
T Consensus 18 ~i~f~~gi~~I~G~NG 33 (895)
T PRK01156 18 EIEFDTGINIITGKNG 33 (895)
T ss_pred eEecCCCeEEEECCCC
Confidence 3444444444444444
No 129
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=63.30 E-value=1.3e+02 Score=33.39 Aligned_cols=97 Identities=15% Similarity=0.214 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhh---hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEK---GQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLK 213 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK---~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLK 213 (408)
+.++.+..+++.|..+-+.|...++.+ +.++..|+.-.+.|+.-|++-+-+-.+++.++.+.--.+..++++++.+-
T Consensus 301 ~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~ 380 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKF 380 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344445555566666666666665554 45555666666666666666555555555555554444444444443322
Q ss_pred HHHHHHHHhhhhhhhhhccCCCC
Q 042473 214 RSQARLQKLGYHLGLDATKVGGN 236 (408)
Q Consensus 214 rsqaRl~kl~d~l~sd~~k~g~n 236 (408)
.-|..|++-|.++|+..+.|
T Consensus 381 ---~~~~~l~~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 381 ---IDLNSLIRRIKLGIAENSKN 400 (581)
T ss_pred ---HHHHHHHHHHHHHHHHHhcc
Confidence 23445566666676666666
No 130
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.13 E-value=1.1e+02 Score=27.06 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=26.7
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 165 QEADILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 165 ~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
+.+..|.++|.++|.++...+.+..+|+-.++.=+.
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~ 180 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRYEEISERLKEELK 180 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888777765443
No 131
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=62.96 E-value=80 Score=32.00 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=54.5
Q ss_pred cCCCCcchhhccccCCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhh--------hhhhhHHHHhhHHHHHHHHHHH
Q 042473 113 ISDGINDRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEE--------KGQEADILSSRIKELETQLQKE 184 (408)
Q Consensus 113 ~sd~~~d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~lee--------K~~E~~~Lssri~eLe~qL~kE 184 (408)
|.+| +.||.|-....=+...+..++.+.+..+.+|..+...|+..... -..+...+..++..++.++...
T Consensus 74 V~eG--~~V~kGq~L~~l~~~~~~~~~~~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~ 151 (421)
T TIGR03794 74 VEVG--DQVKKGQVVARLFQPELRERLQESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAAL 151 (421)
T ss_pred CCCc--CEECCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 4444 67887776554455567888999999999998888877653321 1233455666777777777766
Q ss_pred HHHHHHHHHHHHHHH
Q 042473 185 KEESKRIASKIKKFV 199 (408)
Q Consensus 185 keeCkr~tSkiKKfv 199 (408)
+.+-.+.-.-.++..
T Consensus 152 ~~~~~~~~~l~~~~~ 166 (421)
T TIGR03794 152 SREVGKQRGLLSRGL 166 (421)
T ss_pred HHHHHHHHHHHHhhh
Confidence 665555555544443
No 132
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=62.58 E-value=97 Score=28.95 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=47.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
..+..+|..+++-+.++..+...-.+-|-.|+.+...+..-...+...+.+|...++.....-..+..+
T Consensus 64 ~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~ 132 (201)
T PF12072_consen 64 KLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEEL 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777788888888877788888888877777777777777777555555444444444433
No 133
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.58 E-value=60 Score=37.63 Aligned_cols=34 Identities=32% Similarity=0.273 Sum_probs=20.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhh
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEK 163 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK 163 (408)
-++--|+.|||+++.-..--..++++|+..+.+|
T Consensus 507 ~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~k 540 (1118)
T KOG1029|consen 507 PEKQELNHQLKQKQSAHKETTQRKSELEAARRKK 540 (1118)
T ss_pred hHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHH
Confidence 4566777888887765544444455555555554
No 134
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.53 E-value=80 Score=25.38 Aligned_cols=30 Identities=33% Similarity=0.364 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEE 162 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~lee 162 (408)
..+..||..+...+..|..++..++.++++
T Consensus 8 ~~l~~~l~~~~~q~~~l~~~~~~~~~~~~e 37 (106)
T PF01920_consen 8 QELNQQLQQLEQQIQQLERQLRELELTLEE 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888777664
No 135
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=61.43 E-value=38 Score=34.73 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=6.8
Q ss_pred HHHHhhHHHHHHHHHH
Q 042473 168 DILSSRIKELETQLQK 183 (408)
Q Consensus 168 ~~Lssri~eLe~qL~k 183 (408)
..|..+|.+|+.+|.+
T Consensus 252 ~~~~~~i~~l~~~l~~ 267 (406)
T PF02388_consen 252 EKLEKEIEKLEEKLEK 267 (406)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444433
No 136
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=61.03 E-value=65 Score=37.88 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=45.9
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
.++.+.+..+...+.+...|+-.+.+++.+||.+... .|.+|-.+..-|-.+-......+|.|+....++++++..|
T Consensus 251 ~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~e---t~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~l 327 (1072)
T KOG0979|consen 251 NAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKE---TRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKL 327 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666667777888888888885444 4444444444444444555555556565555555555555
Q ss_pred hh
Q 042473 227 GL 228 (408)
Q Consensus 227 ~s 228 (408)
.+
T Consensus 328 e~ 329 (1072)
T KOG0979|consen 328 ES 329 (1072)
T ss_pred HH
Confidence 43
No 137
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.93 E-value=43 Score=38.74 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=18.7
Q ss_pred HHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 042473 148 VLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEES 188 (408)
Q Consensus 148 ~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeC 188 (408)
.|...|.+|+..|+-=..-.-.|+.||.|.+..+...|++-
T Consensus 434 ~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~i 474 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEI 474 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHH
Confidence 34444455544433322223344555555555555555543
No 138
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=60.66 E-value=62 Score=31.28 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=37.4
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRS 215 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrs 215 (408)
=.|+..-..||..++.+.+.++.--.-...|...|.+-+++-+++--|+-+.+.+--+--+.|||||-.
T Consensus 82 inlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~ 150 (189)
T TIGR02132 82 INLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKET 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Confidence 334444444555555554444422223333444555555555556666666676666666777777653
No 139
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.50 E-value=1.3e+02 Score=33.64 Aligned_cols=87 Identities=28% Similarity=0.408 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--
Q 042473 138 QLKEVQLDINVLEDRKLQLETNEEEKGQEADILS-------SRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQM-- 208 (408)
Q Consensus 138 QLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Ls-------sri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~ra-- 208 (408)
.+|++.--+++|+-+-+.-|..|--=.++++.|. |++.+||--|...+|+|--|-+..| |||++..-|
T Consensus 339 e~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLk---kAh~~~ddar~ 415 (654)
T KOG4809|consen 339 ENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLK---KAHNIEDDARM 415 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHhhHhhhc
Confidence 3444444444444433333333333345566555 4667777778888999988887654 566544332
Q ss_pred ------------------hHHHHHHHHHHHHhhhhhh
Q 042473 209 ------------------QDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 209 ------------------QdeLKrsqaRl~kl~d~l~ 227 (408)
.++++++||-..+|--.|+
T Consensus 416 ~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilk 452 (654)
T KOG4809|consen 416 NPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILK 452 (654)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999998877755443
No 140
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=60.26 E-value=84 Score=30.23 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=11.2
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHH
Q 042473 167 ADILSSRIKELETQLQKEKEESK 189 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCk 189 (408)
...+...|..||.+|..-+.+|.
T Consensus 257 ~~~~~~~i~~le~el~~l~~~~~ 279 (312)
T PF00038_consen 257 REEYQAEIAELEEELAELREEMA 279 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchhHHHHHHHHH
Confidence 33445555555555555444433
No 141
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=60.13 E-value=15 Score=36.75 Aligned_cols=92 Identities=21% Similarity=0.206 Sum_probs=53.4
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHS 206 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~ 206 (408)
..+|.|..++ +++--++.+..+|..|--.|+++-.|...+..|+..||..++.-.|..+++--++- +...||-
T Consensus 129 ~~~d~ke~~e----e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~---~L~~r~~ 201 (290)
T COG4026 129 EYMDLKEDYE----ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVY---DLKKRWD 201 (290)
T ss_pred hhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH---HHHHHHH
Confidence 3445554443 33344455666666666667777777778888888888888875555554443332 2234555
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhcc
Q 042473 207 QMQDDLKRSQARLQKLGYHLGLDATK 232 (408)
Q Consensus 207 raQdeLKrsqaRl~kl~d~l~sd~~k 232 (408)
...+.| +-+--.+++|+.+
T Consensus 202 ELe~~~-------El~e~~~i~dl~~ 220 (290)
T COG4026 202 ELEPGV-------ELPEEELISDLVK 220 (290)
T ss_pred Hhcccc-------cchHHHHHHHHHH
Confidence 555443 3333456677655
No 142
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=59.97 E-value=57 Score=38.00 Aligned_cols=87 Identities=17% Similarity=0.291 Sum_probs=53.4
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHS 206 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~ 206 (408)
..++-+++||.|-.....|.-.|++-|-..|..| ..|-+--+++++|+.. +-++|-.|--..+..-
T Consensus 348 gfddk~~eLEKkrd~al~dvr~i~e~k~nve~el-------qsL~~l~aerqeQide-------lKn~if~~e~~~~dhe 413 (1265)
T KOG0976|consen 348 GFDDKLNELEKKRDMALMDVRSIQEKKENVEEEL-------QSLLELQAERQEQIDE-------LKNHIFRLEQGKKDHE 413 (1265)
T ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------HHHhhhhhhhccchhH
Confidence 3445556666666655555555555443333333 3444445555666655 4445555555556666
Q ss_pred hhhHHHHHHHHHHHHhhhhhh
Q 042473 207 QMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 207 raQdeLKrsqaRl~kl~d~l~ 227 (408)
-|..||.+++-||..||-.|+
T Consensus 414 ~~kneL~~a~ekld~mgthl~ 434 (1265)
T KOG0976|consen 414 AAKNELQEALEKLDLMGTHLS 434 (1265)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 788899999999999998775
No 143
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=59.72 E-value=82 Score=29.63 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 042473 196 KKFVKAHNRHSQMQDDLKRSQARLQKLGYH 225 (408)
Q Consensus 196 KKfvKah~r~~raQdeLKrsqaRl~kl~d~ 225 (408)
|..-|+..++-+|+.++..++...+.....
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~ 179 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVKA 179 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444443
No 144
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=59.40 E-value=48 Score=27.48 Aligned_cols=20 Identities=45% Similarity=0.539 Sum_probs=9.0
Q ss_pred hhHHHHhhHHHHHHHHHHHH
Q 042473 166 EADILSSRIKELETQLQKEK 185 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEk 185 (408)
|+..|...|.+||.++..-.
T Consensus 75 e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 75 EVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 145
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.26 E-value=1.3e+02 Score=34.15 Aligned_cols=95 Identities=24% Similarity=0.277 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhh
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADIL----SSRIKELETQLQKEKEESKRIASKIKKFVKAHNR-HSQM 208 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~L----ssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r-~~ra 208 (408)
.+.+||-.++.++.+..+--.+|-..++.|+.|+.-| -+++.+|+-+..--+++-+++-|-+-++.|-++| ..++
T Consensus 123 ~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql 202 (716)
T KOG4593|consen 123 KLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQL 202 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777888888877654 3444455555555555567777888888888865 5688
Q ss_pred hHHHHHHHHHHHHhhhhhhh
Q 042473 209 QDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 209 QdeLKrsqaRl~kl~d~l~s 228 (408)
+++.+..+++.+.|-..-..
T Consensus 203 ~~~~q~~~~~~~~l~e~~~~ 222 (716)
T KOG4593|consen 203 QEENQKIQELQASLEERADH 222 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988887776554333
No 146
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.02 E-value=1.5e+02 Score=35.79 Aligned_cols=46 Identities=30% Similarity=0.372 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQ 182 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~ 182 (408)
+|+.+++.-.-.|++.--+|++-|++-.-++..+.+.++.|++||.
T Consensus 799 ~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~ 844 (1293)
T KOG0996|consen 799 EQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIA 844 (1293)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444445544444444443
No 147
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=58.89 E-value=1.4e+02 Score=30.70 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=50.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHh-----------HHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLET-----------NEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK 196 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~-----------~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK 196 (408)
=+.|.+.||..+.++..|+.+-++|-. .+..=+.+.+.-+..|..|..-|.+-.|+|.|.=.-|-
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999999999998888862 22233566777888999999999999999987544443
No 148
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=58.75 E-value=1e+02 Score=25.27 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
+.|.+.+.=|..+.+.-..|+.-+++=-.+...|.+.+..|.....+-+++-....++|+.++-
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666777777777777777666677778888888888888888888888888877663
No 149
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=58.67 E-value=62 Score=32.08 Aligned_cols=86 Identities=15% Similarity=0.262 Sum_probs=42.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcccccC
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKI-KKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSINIMS 246 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSki-KKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~~k~g~needsSini~s 246 (408)
..|..++..|+.||..| ..+|+... ..+-..-..|.++|-|+.-+++.++.+...+-. ++..+.-+...|-|++
T Consensus 245 ~~l~~~i~~l~~~i~~e---~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~--a~~~~~~~~~~~~vi~ 319 (362)
T TIGR01010 245 PSLQARIKSLRKQIDEQ---RNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQ--TRVEADRQQLYLEVIS 319 (362)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhheeeeeee
Confidence 34444555555555442 23333321 123333456777777777777777766554432 2222333455566665
Q ss_pred CCCCCCcccCCCC
Q 042473 247 DEETTNYHLVDPQ 259 (408)
Q Consensus 247 d~e~~~~~~~sp~ 259 (408)
....|. .+..|+
T Consensus 320 ~p~~P~-~p~~P~ 331 (362)
T TIGR01010 320 QPSLPD-DALEPY 331 (362)
T ss_pred CCCCCC-CcCCCh
Confidence 444443 444443
No 150
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.55 E-value=71 Score=32.15 Aligned_cols=76 Identities=18% Similarity=0.378 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 042473 139 LKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQAR 218 (408)
Q Consensus 139 Lk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaR 218 (408)
+..-+.-+..|...+..++.-|+.....+..+.+++.++..++.+.+.+-+.+=.+|+.+ .-=++-|.++-..|+|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~----~~~I~~r~~~l~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL----KENIVERQELLKKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 334444455555555666666666666666666666666666666666655555444432 2223344444444554
No 151
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=58.49 E-value=47 Score=29.01 Aligned_cols=56 Identities=21% Similarity=0.386 Sum_probs=44.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 170 LSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 170 Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
+-+...+|+.++..-++.|+.|...+++|+.+...+..++-.++ ..++.||+.|..
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~ 79 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMK---SPFEELADALIE 79 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT---HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhh---HHHHHHHHHHHH
Confidence 56678888888888888888899999999988887777776555 667777776644
No 152
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=58.33 E-value=41 Score=30.48 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHN 203 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~ 203 (408)
.|-.+.++ ++++.|++=..+|.++++++-.|.. +...++++..+-..+|+..|..|+
T Consensus 13 ~lra~~re--~~~e~Lee~~ekl~~vv~er~ee~~-----------~~~~~~~er~~kl~~~r~~m~~~G 69 (135)
T PRK10947 13 TLRAQARE--CTLETLEEMLEKLEVVVNERREEES-----------AAAAEVEERTRKLQQYREMLIADG 69 (135)
T ss_pred HHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455554 4788888888999999998855443 333445555555566777776665
No 153
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=58.33 E-value=1e+02 Score=25.24 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQ 155 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~ 155 (408)
+++.++|+++..|++.|......
T Consensus 1 e~l~~~l~~l~~d~~~l~~~~~~ 23 (94)
T PF05957_consen 1 EDLKAELEQLRADLEDLARSAAD 23 (94)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888898888888766543
No 154
>PRK11519 tyrosine kinase; Provisional
Probab=58.31 E-value=1.5e+02 Score=32.64 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=18.8
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhh
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDR 152 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~ 152 (408)
......+-|++||.+++.+++..+..
T Consensus 264 ~a~~a~~fL~~ql~~l~~~L~~aE~~ 289 (719)
T PRK11519 264 EASKSLAFLAQQLPEVRSRLDVAENK 289 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456688889998888888666544
No 155
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=57.80 E-value=88 Score=32.34 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 179 TQLQKEKEESKRIASKIKKFVK-----AHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 179 ~qL~kEkeeCkr~tSkiKKfvK-----ah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
+.+.+.+...+.+...+|++-+ .....-+++++++++++.|..+-..|
T Consensus 39 ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 39 SSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 3455555556666666666633 45677788899999999988776444
No 156
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.64 E-value=2e+02 Score=28.89 Aligned_cols=84 Identities=18% Similarity=0.284 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhhHHHH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKI---KKFVKAHNRHSQMQDDLK 213 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSki---KKfvKah~r~~raQdeLK 213 (408)
..|++....++.|..+-..++..|+++..|+..|-..|..=-.....++..|.....++ .+-|.. .=-.||.+|.
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~--~~~~a~~~L~ 85 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEE--IKEEAEEELA 85 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCC--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 57888999999999999999999999999999887777532222333333443333222 222222 2234566666
Q ss_pred HHHHHHHHh
Q 042473 214 RSQARLQKL 222 (408)
Q Consensus 214 rsqaRl~kl 222 (408)
.++--|+.-
T Consensus 86 ~a~P~L~~A 94 (344)
T PF12777_consen 86 EAEPALEEA 94 (344)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555543
No 157
>PRK10884 SH3 domain-containing protein; Provisional
Probab=57.06 E-value=67 Score=30.75 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhh----hhHHHHhhHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQ----EADILSSRIKELETQLQK 183 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~----E~~~Lssri~eLe~qL~k 183 (408)
..++.||++++..+..++.+-.+....|++++. ++..|...+++|..||..
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888877777776664444444444443 334444455555555544
No 158
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=56.90 E-value=88 Score=31.29 Aligned_cols=20 Identities=35% Similarity=0.393 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q 042473 134 VLLEQLKEVQLDINVLEDRK 153 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~K 153 (408)
.|.+|+..+...+..|.+++
T Consensus 3 el~~~~~~~~~~~r~l~~~~ 22 (378)
T TIGR01554 3 ELKEQREEIVAEIRSLLDKA 22 (378)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 46667777777777777643
No 159
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.86 E-value=1.3e+02 Score=30.37 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=47.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHH
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKE 186 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEke 186 (408)
.=..+++.+++++.+|+.|..+-..+.--.++.-.|++++.+.+..|+.++..-++
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999888888888888888888888888877444
No 160
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=56.82 E-value=54 Score=31.62 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=60.1
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhhhhHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK-----------KFVKAHNRHSQMQDDLKRS 215 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK-----------KfvKah~r~~raQdeLKrs 215 (408)
+++.|+..-++..++++..+...+..++.-||.. . .+-+.+.-.-. |+|+.|.-+ -. +.+
T Consensus 66 da~~dq~~~~q~e~~~~lk~~a~~~E~lk~lE~~-k---ae~k~~~e~re~~l~~~qae~~klv~iY~~M---kp--~~a 136 (192)
T COG3334 66 DAAADQLYALQKELLEKLKDLAEVNERLKALEKK-K---AELKDLEEEREGILRSKQAEDGKLVKIYSKM---KP--DAA 136 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHcC---Ch--hhH
Confidence 6788888889999999999999999999888876 2 22222222222 344444322 11 356
Q ss_pred HHHHHHhhhhhhhhhccCCCCCCCCcccccCC
Q 042473 216 QARLQKLGYHLGLDATKVGGNEEDSSINIMSD 247 (408)
Q Consensus 216 qaRl~kl~d~l~sd~~k~g~needsSini~sd 247 (408)
=++|+.|.+++|.-|+-. -++..+++ |+++
T Consensus 137 A~~le~l~~e~Aa~Il~~-L~~r~~~~-ILak 166 (192)
T COG3334 137 AAILENLPDEEAAAILMK-LKPRKLGL-ILAK 166 (192)
T ss_pred HHHHHcCCHHHHHHHHHh-CChhHHHH-HHHc
Confidence 788999999999998876 55555554 4433
No 161
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.58 E-value=1.7e+02 Score=34.38 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=29.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHH
Q 042473 128 PSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADIL 170 (408)
Q Consensus 128 ~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~L 170 (408)
+..+...|+++|+++..-+..+...+.++|..|..--.++..+
T Consensus 598 ~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~ 640 (1201)
T PF12128_consen 598 YAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEEL 640 (1201)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888888887777777765443333333
No 162
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=56.29 E-value=41 Score=31.23 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=33.0
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDL 212 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeL 212 (408)
+.+.+..+++++|..+.+-..+|++.+.-++.......+|..+..+|
T Consensus 3 ~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~l 49 (216)
T cd07599 3 QFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAEL 49 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888877777777777776666666655555444
No 163
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=56.09 E-value=1e+02 Score=29.66 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=38.4
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhhhhHHHHHHHHHHH
Q 042473 164 GQEADILSSRIKELETQLQKEKEESKRIASKIK-------KFVKAHNRHSQMQDDLKRSQARLQ 220 (408)
Q Consensus 164 ~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK-------KfvKah~r~~raQdeLKrsqaRl~ 220 (408)
-.+...+...+..++.+|...+.+-.|+..-.+ .|..+...|..|+.+|..+++.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~ 159 (327)
T TIGR02971 96 FKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRS 159 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888888887777765442 455666666666666666666654
No 164
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=55.66 E-value=55 Score=31.19 Aligned_cols=37 Identities=8% Similarity=0.305 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 042473 194 KIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 194 kiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
++.-.+++...+-+.|.+|...++++..|.++..-..
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~st 196 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYST 196 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEE
Confidence 5666778888888889999999999998888876543
No 165
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=55.62 E-value=1.5e+02 Score=29.98 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhHHHHHH
Q 042473 139 LKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKA---HNRHSQMQDDLKRS 215 (408)
Q Consensus 139 Lk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKa---h~r~~raQdeLKrs 215 (408)
|.+|-+=+-.|-.+-..||..+-...+..+..=--|.+.|..|+--++-=..|+++|.|+-+- ..+++.++.||.|+
T Consensus 98 l~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvra 177 (271)
T PF13805_consen 98 LSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRA 177 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 445555556666677777777777777777777788888888888888888888888875311 14667777777777
Q ss_pred HHH
Q 042473 216 QAR 218 (408)
Q Consensus 216 qaR 218 (408)
+|-
T Consensus 178 Eae 180 (271)
T PF13805_consen 178 EAE 180 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 166
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=55.14 E-value=1.1e+02 Score=24.67 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 042473 193 SKIKKFVKAHNRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 193 SkiKKfvKah~r~~raQdeLKrsqaRl~kl 222 (408)
.-+.|++..-+|+....+-+.+.|.|+.+|
T Consensus 61 ~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 61 PYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367888889999999999999999999887
No 167
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=55.03 E-value=74 Score=35.04 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=52.8
Q ss_pred hhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 152 RKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 152 ~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
.+...+...++...|+..|...|++|..++..-.++=+.++..++.........-.-..+|...-+...|+.++|
T Consensus 315 ~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 315 EKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL 389 (594)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556677778888888888888888888888888888888777666666666666655555555555554
No 168
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=54.93 E-value=2.6e+02 Score=28.81 Aligned_cols=70 Identities=29% Similarity=0.311 Sum_probs=52.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHH-------hhH------HHHHHHHHHHHHHHHHHHHHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILS-------SRI------KELETQLQKEKEESKRIASKIK 196 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Ls-------sri------~eLe~qL~kEkeeCkr~tSkiK 196 (408)
.-|+.|+.+|.+|..+|++|...|..||..|+.-..=..+-. .|. .+.|.+|.+|.+-+..+-..++
T Consensus 57 ~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~ 136 (384)
T PF03148_consen 57 FWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQ 136 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999987643322211 121 3678999999987777665555
Q ss_pred HHH
Q 042473 197 KFV 199 (408)
Q Consensus 197 Kfv 199 (408)
+-+
T Consensus 137 ~~l 139 (384)
T PF03148_consen 137 RTL 139 (384)
T ss_pred HHH
Confidence 443
No 169
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=54.60 E-value=88 Score=25.17 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLET 158 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~ 158 (408)
..|...|..+..-++.+.+....|+.
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~ 28 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLIS 28 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555555555555555544444443
No 170
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.13 E-value=94 Score=28.39 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhH-hHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 137 EQLKEVQLDINVLEDRKLQLE-TNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE-~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
.+|-..+..++++..+-.... ..-.-...+...++..|.+|..+|.+.+.|-..|-.+++.+-+.|
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444544444332221 111113356678888999999999998888888988888887766
No 171
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=54.11 E-value=1.9e+02 Score=27.09 Aligned_cols=92 Identities=21% Similarity=0.249 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhh-------------------HHHHhhHHHHHHHHHH--------H
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEA-------------------DILSSRIKELETQLQK--------E 184 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~-------------------~~Lssri~eLe~qL~k--------E 184 (408)
=+.||.||+.+..=++.|..+-..|...+.+=..-+ .....++..+...++. -
T Consensus 13 i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~ 92 (216)
T cd07627 13 LDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVT 92 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999888777766554432222 2222233333222211 1
Q ss_pred HHHHHHHHHHHHHHH----HHhhhhhhhhHHHHHHHHHHHHhh
Q 042473 185 KEESKRIASKIKKFV----KAHNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 185 keeCkr~tSkiKKfv----Kah~r~~raQdeLKrsqaRl~kl~ 223 (408)
-.+--||+.-+|-.+ +++..|..|+.+|-+.+++++||.
T Consensus 93 L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~ 135 (216)
T cd07627 93 LDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLK 135 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112234455555443 556788889999999999999986
No 172
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=54.06 E-value=2.1e+02 Score=27.49 Aligned_cols=94 Identities=20% Similarity=0.275 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHh--------HHhhhhhhhHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLET--------NEEEKGQEADILSSRIK-----ELETQLQKEKEESKRIASKIKKFV 199 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~--------~leeK~~E~~~Lssri~-----eLe~qL~kEkeeCkr~tSkiKKfv 199 (408)
.+|...+..+...|..|..+-..|-. .|.+...||..|=..|+ ........|..+++.+-++|++++
T Consensus 90 ~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 90 QDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655544433 44555555555544442 222333456677777777777765
Q ss_pred H-----HhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 200 K-----AHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 200 K-----ah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
. -....-.+++.|..=.++|.-|-+.|
T Consensus 170 ~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l 201 (264)
T PF06008_consen 170 QKPQQENESLAEAIRDDLNDYNAKLQDLRDLL 201 (264)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22344445666666666666655544
No 173
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=53.78 E-value=45 Score=35.71 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=53.5
Q ss_pred CcchhhccccCCCchhhhHHHHHHHHHHHH--HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHH-HHHHHH
Q 042473 117 INDRVKERKFTPSDSKVVLLEQLKEVQLDI--NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEE-SKRIAS 193 (408)
Q Consensus 117 ~~d~~Kd~k~~~s~~k~~leeQLk~v~~D~--~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkee-Ckr~tS 193 (408)
++-..+|-.+...|.- ++.+||-.-+|| ..|+..|-.=+.+++..+.+.++ ++..|..+.+|.-+ |.+
T Consensus 189 AE~li~dm~f~e~D~~--~d~elKla~ldiY~srl~eR~RRK~~I~d~nLl~~rk----~q~~e~~~skEer~l~~s--- 259 (438)
T KOG0457|consen 189 AEQLIRDMEFEEDDTE--EDHELKLAVLDIYNSRLKERKRRKRFIRDRNLLDYRK----NQAMEKRLSKEERELYNS--- 259 (438)
T ss_pred hhhhHhhcccCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh----hhHHHhhccHHHHHHHHH---
Confidence 4445566555555544 555555555555 99999999999999999999987 67777777765433 222
Q ss_pred HHHHHHHHhhhhhhhhHH
Q 042473 194 KIKKFVKAHNRHSQMQDD 211 (408)
Q Consensus 194 kiKKfvKah~r~~raQde 211 (408)
+|+|+||+..+|.
T Consensus 260 -----~k~fAR~~t~~d~ 272 (438)
T KOG0457|consen 260 -----IKVFARFLTKSDH 272 (438)
T ss_pred -----HHHHhcccChHHH
Confidence 4555565555543
No 174
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=53.68 E-value=72 Score=26.75 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHH---hhhhhhhHHHHhhHHHHHHHHHH
Q 042473 138 QLKEVQLDINVLEDRKLQLETNE---EEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 138 QLk~v~~D~~~L~d~Ks~LE~~l---eeK~~E~~~Lssri~eLe~qL~k 183 (408)
=|-.|+.||+++.++-+.|+..+ +....-+..|+.|+.-+..||..
T Consensus 5 ILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~ 53 (75)
T PF05531_consen 5 ILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTT 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 36788999999988887777554 34455555666666666666665
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.53 E-value=97 Score=33.70 Aligned_cols=65 Identities=22% Similarity=0.148 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLED-RKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFV 199 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d-~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfv 199 (408)
||-|-+-...-|..+.+ |-.-++.+++.++.|++.|....+++|+--.-.-.-|..+.-|+||+.
T Consensus 330 leSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~ 395 (493)
T KOG0804|consen 330 LESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQ 395 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444545555544444 333334566777777777666555555443333333444444444433
No 176
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=53.52 E-value=51 Score=37.44 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=19.5
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
|+..|..+|.-||.+|.+|+-.|.-+..|-+++
T Consensus 674 E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~L 706 (769)
T PF05911_consen 674 EAEELQSKISSLEEELEKERALSEELEAKCREL 706 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 555566666666666666666666655554443
No 177
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=53.41 E-value=50 Score=28.45 Aligned_cols=41 Identities=32% Similarity=0.379 Sum_probs=18.8
Q ss_pred HHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 042473 148 VLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEES 188 (408)
Q Consensus 148 ~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeC 188 (408)
.|..+-..|+..+.....+..+|...+..++.++..-|+||
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444
No 178
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=52.76 E-value=61 Score=28.88 Aligned_cols=48 Identities=27% Similarity=0.360 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHH
Q 042473 140 KEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEE 187 (408)
Q Consensus 140 k~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkee 187 (408)
++...|++.|-+.+..||..|.--.+-+.-|-..|...|..|.++.+.
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~ 63 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEY 63 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777766555555555555555555554333
No 179
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.26 E-value=5.7 Score=40.82 Aligned_cols=23 Identities=39% Similarity=0.836 Sum_probs=21.8
Q ss_pred hhhhhcccCCCCC-CCCCcccCcc
Q 042473 10 RICVLYQKGRCSR-PTCSFAHGDA 32 (408)
Q Consensus 10 kLC~~f~~G~C~~-~~C~FAHGe~ 32 (408)
.+|.+|++|.|.| +.|.|.|-.-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcccccccccceeeeeccCc
Confidence 7999999999999 9999999876
No 180
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=52.17 E-value=2e+02 Score=32.81 Aligned_cols=89 Identities=19% Similarity=0.283 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhhHHH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK----KFVKAHNRHSQMQDDL 212 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK----KfvKah~r~~raQdeL 212 (408)
.+..+.+.+++.|+.....++. .-.++...+-+.+++|..||..-...|+.=-.+|. .+-.+....-.+|..|
T Consensus 366 ~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~L 442 (717)
T PF09730_consen 366 SEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSL 442 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4455566666666666555555 33356678888888888888776555543322222 2223345555667778
Q ss_pred HHHHHHHHHhhhhhhh
Q 042473 213 KRSQARLQKLGYHLGL 228 (408)
Q Consensus 213 KrsqaRl~kl~d~l~s 228 (408)
.-||--|.-+++.||.
T Consensus 443 nsAQDELvtfSEeLAq 458 (717)
T PF09730_consen 443 NSAQDELVTFSEELAQ 458 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888875
No 181
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=51.94 E-value=1.7e+02 Score=33.38 Aligned_cols=93 Identities=14% Similarity=0.262 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHHHH-------hhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 042473 133 VVLLEQLKEVQLDINVLE-------DRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVK----A 201 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~-------d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK----a 201 (408)
-++|..|..++.+|.+|. .+...|.--|+..-..+..+-+++..|+.||++-+.|--.+-+++.-.-. .
T Consensus 241 ~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~ 320 (775)
T PF10174_consen 241 ASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDM 320 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 356667777777777774 45566655666666777788888999999999988777777777764433 3
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhhh
Q 042473 202 HNRHSQMQDDLKRSQARLQKLGYH 225 (408)
Q Consensus 202 h~r~~raQdeLKrsqaRl~kl~d~ 225 (408)
-.||-.++++|.+.+++-..|-.+
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsd 344 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSD 344 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777888888877765555433
No 182
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=51.90 E-value=4.8 Score=45.23 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=0.0
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 042473 165 QEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYH 225 (408)
Q Consensus 165 ~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~ 225 (408)
.-+..|-+||.+||.+|..|.-......-.++|+-+-.+-+.-.=||-++...+++-+++.
T Consensus 743 ~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~k 803 (859)
T PF01576_consen 743 KQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDK 803 (859)
T ss_dssp -------------------------------------------------------------
T ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3567899999999999999999988888888887776544443334444444444444443
No 183
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=51.84 E-value=94 Score=31.90 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=16.8
Q ss_pred hhhhhHhHHhhhhhhhHHHHhhHHHHHHHHH
Q 042473 152 RKLQLETNEEEKGQEADILSSRIKELETQLQ 182 (408)
Q Consensus 152 ~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~ 182 (408)
-|.+||.-|.+-.+|+..+..-|..|+.-+.
T Consensus 259 ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~ 289 (384)
T PF03148_consen 259 AKNELEWQLKKTLQEIAEMEKNIEDLEKAIR 289 (384)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555554443
No 184
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=51.67 E-value=1.2e+02 Score=28.37 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
|.-++.=-.+...+|+.|..-|.-..-+-.+|..|+..|+.|+.+.+..+..
T Consensus 72 K~eFe~Y~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ 123 (152)
T PF11500_consen 72 KEEFESYHEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAE 123 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556677888888888888888888888888888776665544443
No 185
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=51.60 E-value=2e+02 Score=27.24 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=23.3
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
+.|.++-.++..-.+..-.++..++..+..|-.=|.+..+++.-+-.+++-|.|
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333444444444444444444444444444444444433
No 186
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=51.52 E-value=1.6e+02 Score=25.27 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHH
Q 042473 195 IKKFVKAHNRHSQMQDDLKRS 215 (408)
Q Consensus 195 iKKfvKah~r~~raQdeLKrs 215 (408)
.++|..+-..|-.+|.+.+..
T Consensus 94 ~~~f~~~m~~fq~~Q~~~~~~ 114 (151)
T cd00179 94 SKKFVEVMTEFNKAQRKYRER 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777643
No 187
>PRK11281 hypothetical protein; Provisional
Probab=51.16 E-value=80 Score=37.30 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=48.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
+.|.+++.+++.+|+..+++ ++.--..++-+-.+--+||..+..++.|++.+-.+|.+.
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~---La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~ 182 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQND---LAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGG 182 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45788888888888887777 555556678888999999999999999999999888763
No 188
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=50.95 E-value=2e+02 Score=31.01 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 143 QLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKA 201 (408)
Q Consensus 143 ~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKa 201 (408)
+.++...++.-.+-+..|+++..++..-...+...+.+|...++++..+-.....++..
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~ 133 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444555555555544445555555555555555555554444433
No 189
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=50.53 E-value=1.5e+02 Score=24.81 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHHhhhhhhhhhcc
Q 042473 172 SRIKELETQLQKEKEESKRIASKIKKFVKAH---NRHSQMQDDLKRSQARLQKLGYHLGLDATK 232 (408)
Q Consensus 172 sri~eLe~qL~kEkeeCkr~tSkiKKfvKah---~r~~raQdeLKrsqaRl~kl~d~l~sd~~k 232 (408)
-.+.++=.++.+.+.+...+.+++.+.-+.- ..+-.++++|..++.+|+.+..++..++..
T Consensus 94 ~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~ 157 (194)
T cd07307 94 KEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNK 157 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666777766665532 456788888999999999999888887644
No 190
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=50.41 E-value=1.9e+02 Score=26.07 Aligned_cols=80 Identities=26% Similarity=0.360 Sum_probs=51.9
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF-VKAHNRH 205 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf-vKah~r~ 205 (408)
+-++--+++-.||.+|-.-+.. -| +.|++||+.|+.+|.. |.-++-.|++= -.++.-.
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~---tK--------------khLsqRId~vd~klDe----~~ei~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSS---TK--------------KHLSQRIDRVDDKLDE----QKEISKQIKDEVTEVREDV 98 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---HH--------------HHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHhhH
Confidence 3344556777788887654433 33 4567788887777654 45555555543 3456677
Q ss_pred hhhhHHHHHHHHHHHHhhhhhh
Q 042473 206 SQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 206 ~raQdeLKrsqaRl~kl~d~l~ 227 (408)
.+.++|++.-|..++-|..-|.
T Consensus 99 ~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 99 SQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888777776654
No 191
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=50.38 E-value=91 Score=30.59 Aligned_cols=51 Identities=12% Similarity=0.264 Sum_probs=31.4
Q ss_pred hHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042473 156 LETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHS 206 (408)
Q Consensus 156 LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~ 206 (408)
||..++....+..+|..+++.....|.+.+++-.-|..+...+-+.|.|++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 444455555556666666666666666666666666666666666666554
No 192
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=50.24 E-value=1.2e+02 Score=25.83 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=50.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhh---hhhhHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEK---GQEADILSSRIKELETQLQKE-KEESKRIASKIKKFVKAHN 203 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK---~~E~~~Lssri~eLe~qL~kE-keeCkr~tSkiKKfvKah~ 203 (408)
+=+.+|+.|++-+.|+++++-.--.-++.-+.+ -.|...|.+++...|.||..- +|.+|.|.--+-=|+..+-
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK~~~ls~~l~~v~~L 82 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRKSMLLSVALFFVCFL 82 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 346789999999999988765432222222111 167899999999999999874 6788888776666655443
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.15 E-value=1.2e+02 Score=33.11 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=17.6
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIA 192 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~t 192 (408)
+..+..|+..+..+|..++|+=+-|.
T Consensus 384 ~~q~q~k~~k~~kel~~~~E~n~~l~ 409 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEEREENKKLI 409 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777666554
No 194
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=49.87 E-value=2.5e+02 Score=29.37 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhh
Q 042473 209 QDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 209 QdeLKrsqaRl~kl~d~l~sd 229 (408)
.++|+..++.+..+-+++-.-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 79 KEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444444443
No 195
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=49.84 E-value=2.1e+02 Score=27.46 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHhhhhh
Q 042473 208 MQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l 226 (408)
+|.+++.++++++..-..|
T Consensus 184 ~~~~i~~~~~~l~~a~~~l 202 (334)
T TIGR00998 184 KQPAVQEAKERLKTAWLAL 202 (334)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3444555555555544333
No 196
>PRK04325 hypothetical protein; Provisional
Probab=49.79 E-value=83 Score=25.63 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=33.3
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
++.|..||.+||.+|+=-.+-...+- .-+.+-|.++-+-+..|..|++.|.+
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN----------~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLN----------ATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688889999988876444333332 22344555666666777777777755
No 197
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.75 E-value=1.1e+02 Score=36.18 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=67.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQ-KEKEESKRIASKIKKFVKAHNRHSQMQ 209 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~-kEkeeCkr~tSkiKKfvKah~r~~raQ 209 (408)
+.+.|+-+|.+-..+|+-| ...+--|++|++.+.=|..=+|.+|+ -.|++|+++ +||- -+|-..|
T Consensus 949 daegL~~tle~re~eikeL-------kk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v----~~~~---ek~ee~~ 1014 (1243)
T KOG0971|consen 949 DAEGLGLTLEDRETEIKEL-------KKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRV----EKVQ---EKLEETQ 1014 (1243)
T ss_pred hhhhhhhhHHhhHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHH----HHHH---HHHHHHH
Confidence 4466777777777777655 45567789999999999999999998 456788875 3443 4556677
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccC
Q 042473 210 DDLKRSQARLQKLGYHLGLDATKV 233 (408)
Q Consensus 210 deLKrsqaRl~kl~d~l~sd~~k~ 233 (408)
-.|.+-|+-|+.--|.|..||..-
T Consensus 1015 a~lr~Ke~efeetmdaLq~di~~l 1038 (1243)
T KOG0971|consen 1015 ALLRKKEKEFEETMDALQADIDQL 1038 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887543
No 198
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=49.73 E-value=59 Score=25.86 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=35.2
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042473 165 QEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRH 205 (408)
Q Consensus 165 ~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~ 205 (408)
+++.+|++-|+.+..|+..-+++-..|--.+|+++..|--.
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888899999999999999999999999999998543
No 199
>PRK04863 mukB cell division protein MukB; Provisional
Probab=49.56 E-value=1.6e+02 Score=35.89 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHh
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLET 158 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~ 158 (408)
++..|++|..-++.|..+..+++-
T Consensus 312 I~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 312 MARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 200
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=49.34 E-value=1.8e+02 Score=29.49 Aligned_cols=52 Identities=23% Similarity=0.162 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
+..||..|.-|+.-++.|.++.-.=+..|++..+=...|+.|.++|..+...
T Consensus 98 ~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~ 149 (268)
T PF11802_consen 98 ISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVET 149 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455666666666667777777777777777777777888888888776643
No 201
>PF15294 Leu_zip: Leucine zipper
Probab=48.76 E-value=1.9e+02 Score=29.43 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHH---------HhhHHHHHHHHHHHHHHHHHHHHHHH------
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADIL---------SSRIKELETQLQKEKEESKRIASKIK------ 196 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~L---------ssri~eLe~qL~kEkeeCkr~tSkiK------ 196 (408)
.+.|.+.|+.++..--..-++|+.|+..|.+--.+.... +..+.+||.++..-|.+-..-..-.-
T Consensus 141 N~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L 220 (278)
T PF15294_consen 141 NEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKAL 220 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444556666666655433322111 22355667777666655433322221
Q ss_pred --HHHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 042473 197 --KFVKAHNRHSQMQDDLKRSQARLQKLGYH 225 (408)
Q Consensus 197 --KfvKah~r~~raQdeLKrsqaRl~kl~d~ 225 (408)
.+.-+-.-+++.|+.|-.++.-|++.-.+
T Consensus 221 ~e~L~~~KhelL~~QeqL~~aekeLekKfqq 251 (278)
T PF15294_consen 221 EETLQSCKHELLRVQEQLSLAEKELEKKFQQ 251 (278)
T ss_pred HHHHHHHHHHHHhcchhhhcchhhHHHHhCc
Confidence 12233466788888888888888875443
No 202
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=48.72 E-value=1e+02 Score=27.52 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=40.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 129 SDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 129 s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
.+.+-.||.||.-...-++.|+.+....|..|+.-......|...+..++.++..
T Consensus 26 l~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 26 LDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888898888888888887766655555555555555444
No 203
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=48.66 E-value=1.2e+02 Score=23.72 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----h-hhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 173 RIKELETQLQKEKEESKRIASKIKKFVKAHN----R-HSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 173 ri~eLe~qL~kEkeeCkr~tSkiKKfvKah~----r-~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
+|++|..+|.+|.. |-.-..+++++|. . ..+|+..|.-|..+++-|=..|..
T Consensus 2 ~i~~L~~~i~~E~k----i~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~ 58 (70)
T PF02185_consen 2 RIEELQKKIDKELK----IKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEK 58 (70)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999988764 7777888888882 3 678999999999999988877754
No 204
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=48.60 E-value=67 Score=30.10 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=34.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHH-----hhhhhhhHHHHhhHHHHHHHHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNE-----EEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~l-----eeK~~E~~~Lssri~eLe~qL~k 183 (408)
.-..-|++|+..|..-|+.|++...++---+ =.--.|+..|..+|+-||+.|.+
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3346777777777777766665544443211 11124777888888888888877
No 205
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=48.20 E-value=2.3e+02 Score=33.91 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=18.9
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 197 KFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 197 KfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
+.-.+..++.+++.++.+.+.|+..+...+
T Consensus 355 ~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l 384 (1353)
T TIGR02680 355 AIREAESRLEEERRRLDEEAGRLDDAEREL 384 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666777777777777776666553
No 206
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=48.20 E-value=12 Score=37.69 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=30.2
Q ss_pred chhhhhhhhcccCCCCC-CCCCcccCccccc--CCCCC
Q 042473 6 FYKTRICVLYQKGRCSR-PTCSFAHGDAELR--RPFRS 40 (408)
Q Consensus 6 ~yKTkLC~~f~~G~C~~-~~C~FAHGe~ELR--~~~~~ 40 (408)
.+-.-.|.+|-.|.|+- ..|.|+|+..=++ .++..
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~ 138 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCR 138 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCcccccCCCcc
Confidence 47778899999999999 9999999998888 55554
No 207
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=48.15 E-value=80 Score=25.08 Aligned_cols=53 Identities=28% Similarity=0.394 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
++.+.|.+++.+++.+.++-..||...... ...|..+..||.+ |.+-+|-+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~-------e~~i~~~~~~l~~-------I~~n~kW~~r 55 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAAN-------EKDIKNLNKQLEK-------IKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 456778888888887777777777654332 3345666666666 6666655544
No 208
>PRK09039 hypothetical protein; Validated
Probab=47.99 E-value=3.2e+02 Score=27.87 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQ 182 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~ 182 (408)
|.+||...+..+..|..+-++|=..|.=.......|..+|.+|..++.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455666666666666666666554444444444445555544444433
No 209
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.97 E-value=2.3e+02 Score=27.59 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDI 146 (408)
Q Consensus 133 ~~leeQLk~v~~D~ 146 (408)
..|+++|.+++.++
T Consensus 8 ~Ele~rL~q~eee~ 21 (246)
T PF00769_consen 8 QELEERLRQMEEEM 21 (246)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555555
No 210
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.87 E-value=1.2e+02 Score=35.75 Aligned_cols=39 Identities=36% Similarity=0.464 Sum_probs=26.4
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042473 165 QEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHN 203 (408)
Q Consensus 165 ~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~ 203 (408)
.|...+++-+.+||.+++++-.+|..+..+++-.-+.+.
T Consensus 643 ~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~ 681 (1072)
T KOG0979|consen 643 AEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERT 681 (1072)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777776666666553
No 211
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.85 E-value=2.5e+02 Score=29.41 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHH---------hhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNE---------EEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHN 203 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~l---------eeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~ 203 (408)
.....+.+++.++..+.+...+|+... +---.|..++.++|+.++.+|..-.-+|+.++-+|+.=++-|.
T Consensus 384 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~ 462 (503)
T KOG2273|consen 384 KALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISERIRAELERFE 462 (503)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888888777 3445677888899999999999999999888887776555443
No 212
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=47.68 E-value=1.6e+02 Score=31.42 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHh
Q 042473 211 DLKRSQARLQKL 222 (408)
Q Consensus 211 eLKrsqaRl~kl 222 (408)
++..++.++.++
T Consensus 354 el~~l~~~l~~~ 365 (563)
T TIGR00634 354 EVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 213
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=47.56 E-value=98 Score=29.52 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
-++....|++.+|...+..=.|+..-++|=- -=.-.+.++.+|-+.|..++.+--++
T Consensus 129 DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 129 DVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333111 11345555555555555555555544
No 214
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=47.42 E-value=2.6e+02 Score=33.61 Aligned_cols=85 Identities=9% Similarity=0.132 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRI-ASKIKKFVKAHNRHSQMQDDLK 213 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~-tSkiKKfvKah~r~~raQdeLK 213 (408)
..++|.+++.++.....+...++..+..-..++..|-..+..+..+|..+-++|.+- ..--+.+-.+......|.+++.
T Consensus 880 a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~ 959 (1353)
T TIGR02680 880 QRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARG 959 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666655555544444444444443333444444444332 2222233333344444555555
Q ss_pred HHHHHH
Q 042473 214 RSQARL 219 (408)
Q Consensus 214 rsqaRl 219 (408)
++..++
T Consensus 960 ~a~~~~ 965 (1353)
T TIGR02680 960 RAEEKR 965 (1353)
T ss_pred HHHHHH
Confidence 554444
No 215
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=47.25 E-value=69 Score=29.02 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHN 203 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~ 203 (408)
+|-.+.+++ +++.|++=..+|.++++++-+|..... .++.+-+..-.+|++++..|+
T Consensus 13 ~lra~~re~--~~e~Lee~~ekl~~vv~er~~~~~~~~-----------~~~~er~~~l~~i~~~~~~~G 69 (134)
T PRK10328 13 TLRAMAREF--SIDVLEEMLEKFRVVTKERREEEEQQQ-----------RELAERQEKINTWLELMKADG 69 (134)
T ss_pred HHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhC
Confidence 344555543 778888888889988888855543333 333333344455666666654
No 216
>PRK11519 tyrosine kinase; Provisional
Probab=47.24 E-value=1.4e+02 Score=32.99 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=11.6
Q ss_pred CcccccCCCCCCCcccCCCC
Q 042473 240 SSINIMSDEETTNYHLVDPQ 259 (408)
Q Consensus 240 sSini~sd~e~~~~~~~sp~ 259 (408)
+.+.|+..-.++. .++.|+
T Consensus 405 ~~~rIid~A~~P~-~P~~P~ 423 (719)
T PRK11519 405 GDVRIVDPAITQP-GVLKPK 423 (719)
T ss_pred CCeEEEecCCCCC-CCCCCc
Confidence 5666665444443 678887
No 217
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.08 E-value=2.4e+02 Score=34.20 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=31.6
Q ss_pred HHHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 042473 185 KEESK-RIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 185 keeCk-r~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
..+|+ ...+--++|..++...++.++.||+.++.+.||-.++-.+-
T Consensus 379 ~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~ 425 (1293)
T KOG0996|consen 379 AKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKAR 425 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 56666677777777777777777777777777777665543
No 218
>PRK09343 prefoldin subunit beta; Provisional
Probab=46.99 E-value=2e+02 Score=25.16 Aligned_cols=85 Identities=22% Similarity=0.329 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhh---hhhhhHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEE---KGQEADILSS---------------RIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~lee---K~~E~~~Lss---------------ri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
-.+|.+++..+..+..++.+|+..+.+ =+.|++.|.+ -..++-..|.+..|-|. .+|+.
T Consensus 13 ~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie---~~ik~ 89 (121)
T PRK09343 13 LAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE---LRSRT 89 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH---HHHHH
Confidence 346777778888888888888877766 4556666543 23566666777676666 66666
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 198 FVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 198 fvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
+.|-= -..+..|+..|..|+.|.-.+
T Consensus 90 lekq~---~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 90 LEKQE---KKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 66543 234566666677776665443
No 219
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=46.88 E-value=2.8e+02 Score=31.59 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=33.8
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
....+---|+.||.||..+-..|...--.++..|+.--.+++....||..|-.+|
T Consensus 262 l~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l 316 (717)
T PF09730_consen 262 LNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQL 316 (717)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556788999999888776666555555555555555555555555544444
No 220
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=46.80 E-value=7.5 Score=38.28 Aligned_cols=28 Identities=25% Similarity=0.743 Sum_probs=22.7
Q ss_pred hhhhhhhhcc-cCCCCC-CCCCcccCcccc
Q 042473 7 YKTRICVLYQ-KGRCSR-PTCSFAHGDAEL 34 (408)
Q Consensus 7 yKTkLC~~f~-~G~C~~-~~C~FAHGe~EL 34 (408)
|-.-.|..|. .|.|-| +.|.|-|.-.+.
T Consensus 139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~D~ 168 (259)
T COG5152 139 TQPDVCKDYKETGYCGYGDSCKFLHDRSDF 168 (259)
T ss_pred cCcccccchhhcccccCCchhhhhhhhhhh
Confidence 3445799997 599999 999999987644
No 221
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=46.74 E-value=2.6e+02 Score=26.48 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhh-------------------hhhhHHHHhhHHHHHHHHH--------H
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEK-------------------GQEADILSSRIKELETQLQ--------K 183 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK-------------------~~E~~~Lssri~eLe~qL~--------k 183 (408)
.=+.||.||+++..=++.|..+--.|=..+.+= +..+.....+|.++....+ .
T Consensus 20 ~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e 99 (224)
T cd07623 20 QIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLHGEQADTDFYILAE 99 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999988877665544332 1222333333333333221 1
Q ss_pred HHHHHHHHHHHHHHHH----HHhhhhhhhhHHHHHHHHHHHHhh
Q 042473 184 EKEESKRIASKIKKFV----KAHNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 184 EkeeCkr~tSkiKKfv----Kah~r~~raQdeLKrsqaRl~kl~ 223 (408)
--.+--||..-+|--+ +++..|..|+.+|-+.+++++||-
T Consensus 100 ~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~ 143 (224)
T cd07623 100 LLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLE 143 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445555555543 566788899999999999999995
No 222
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=46.09 E-value=2.8e+02 Score=26.62 Aligned_cols=74 Identities=9% Similarity=0.129 Sum_probs=55.4
Q ss_pred HhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 042473 157 ETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH----NRHSQMQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 157 E~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah----~r~~raQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
+-.+-..+.++-..-.-|..+=.+-..-+=+|-++-.+++|+..-- ..+-+|+++|..|+..|+.|-++|..++
T Consensus 94 ~~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~EL 171 (224)
T cd07591 94 RQTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTEL 171 (224)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556655555666666666667778999999999987654 5677999999999999999999987663
No 223
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=46.09 E-value=2.3e+02 Score=25.59 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhh---hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQ---EADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~---E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
+|...+.++..|++.|..+-..+...+++.-. .+..|..||+-||.+|..-..--+-.+-|++--
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555554444444444444332 344688888888888877666555555555433
No 224
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=45.69 E-value=1.8e+02 Score=28.18 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=19.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 196 KKFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 196 KKfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
|.+-|...++-++|.++..+....+..+..|
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l 184 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVL 184 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666666665555
No 225
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=45.39 E-value=2.5e+02 Score=29.91 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=47.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhh-----hHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQ-----LETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRH 205 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~-----LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~ 205 (408)
.-+.|..++.+++.-|+.|+.|=.+ +...|+.=..|++.+...+.+|+.-+..+|---+.|=.+==.-|=-=..|
T Consensus 214 ~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqf 293 (424)
T PF03915_consen 214 ESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQF 293 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777776443 12223333345577777777777777777766666554433333223445
Q ss_pred hhhhHHH
Q 042473 206 SQMQDDL 212 (408)
Q Consensus 206 ~raQdeL 212 (408)
+..|++|
T Consensus 294 L~~QedL 300 (424)
T PF03915_consen 294 LKLQEDL 300 (424)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 226
>PRK09343 prefoldin subunit beta; Provisional
Probab=45.37 E-value=1.4e+02 Score=26.10 Aligned_cols=47 Identities=28% Similarity=0.418 Sum_probs=32.7
Q ss_pred hhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 153 KLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 153 Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
+..+...|++++ ..|..+|..||.|...-++..+.+-++++.++..+
T Consensus 69 ~~e~~~~l~~r~---E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 69 KTKVEKELKERK---ELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444443 45558888888888888888888888888877665
No 227
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=45.34 E-value=37 Score=31.26 Aligned_cols=38 Identities=32% Similarity=0.314 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 144 LDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 144 ~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
.=+.+|..+|..||..|..|++|...|+-|=+||=-.|
T Consensus 32 e~~~~Lk~rk~~Lee~L~~kl~ELk~lClrEAELTG~L 69 (138)
T PF11819_consen 32 ERLRALKKRKQALEERLAQKLEELKKLCLREAELTGEL 69 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34578999999999999999999999998877764443
No 228
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=45.10 E-value=1.8e+02 Score=31.51 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhH-------HhhhhhhhHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETN-------EEEKGQEADILSSRIKELETQLQKEKEESKR-------IASKIKKF 198 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~-------leeK~~E~~~Lssri~eLe~qL~kEkeeCkr-------~tSkiKKf 198 (408)
+++-.||...+.+++.-..+|.+.|+. |+.--+|-.-.-.+..++..-+.|.+.+-.| +-+.++-+
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l 156 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTL 156 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777788887773 3333223223333444444444444444444 44555555
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 199 VKAHNRHSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 199 vKah~r~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
+--|.-+..--+-|--++.-||--+.+|-+
T Consensus 157 ~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~ 186 (499)
T COG4372 157 AEQRRQLEAQAQSLQASQKQLQASATQLKS 186 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555543332223366666667755666554
No 229
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.74 E-value=2.8e+02 Score=27.96 Aligned_cols=43 Identities=30% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELE 178 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe 178 (408)
..|+.+++..|..|..+...|+.-+++|..|.....-|+..|.
T Consensus 175 ~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 175 QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555443
No 230
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.66 E-value=71 Score=27.36 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHH--HhhhhhhHhHHhhhhhhhHHHHhhHHHHHH
Q 042473 136 LEQLKEVQLDINVL--EDRKLQLETNEEEKGQEADILSSRIKELET 179 (408)
Q Consensus 136 eeQLk~v~~D~~~L--~d~Ks~LE~~leeK~~E~~~Lssri~eLe~ 179 (408)
+..|..|+..++.| .++-.+|++.|.+=--++..|+.+++-++.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45555555555555 555555555554443344444444433333
No 231
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=44.61 E-value=1.4e+02 Score=35.05 Aligned_cols=85 Identities=20% Similarity=0.277 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHH------HHHHHH-----------HH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRI------ASKIKK-----------FV 199 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~------tSkiKK-----------fv 199 (408)
.||.+...-|.+|..=--+|-++.++- |..||.|+++||...+++-.=| .|+.-+ |-
T Consensus 864 ~Q~d~aKe~~~~LnkLiPql~ll~dE~------L~dRveE~~E~L~~a~e~~~fI~qhG~tls~LEpia~~LqsDPe~~e 937 (1480)
T COG3096 864 IQFDQAKEGVTALNRLIPQLNLLADES------LADRVEEIRERLDEAQEAARFIQQHGNTLSKLEPIASVLQSDPEQFE 937 (1480)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchh------HHHHHHHHHHHHHHHHHHHHHHHHhcchHHhhhhHHHHHhCCHHHHH
Confidence 344444444455555555555555543 7889999999998655443211 122211 22
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 200 KAHNRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 200 Kah~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
..-.-|.+||.-++..|+++=-|+|.|-
T Consensus 938 ~L~~~y~qA~~~q~q~~qq~FAL~dv~q 965 (1480)
T COG3096 938 QLKEDYAQAQQMQRQARQQAFALTEVVQ 965 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2224678888888888888888877653
No 232
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=44.55 E-value=73 Score=29.42 Aligned_cols=63 Identities=24% Similarity=0.410 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHH---HHHH-HHHHH--HHHHHHHhhh
Q 042473 142 VQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEK---EESK-RIASK--IKKFVKAHNR 204 (408)
Q Consensus 142 v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEk---eeCk-r~tSk--iKKfvKah~r 204 (408)
.+-+++.|..+|.+||-+|.+|-.=..+|.-.-++-|+...+.. .+|+ ||-+. ...++.-|+.
T Consensus 39 L~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~~~eck~R~~fe~qLE~lm~qHKd 107 (134)
T PF15233_consen 39 LQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTLLQECKLRLDFEEQLEDLMGQHKD 107 (134)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999775544777776677766655443 5788 66653 4445555554
No 233
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=44.48 E-value=1.9e+02 Score=24.28 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=54.0
Q ss_pred HHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhhhHHHHHHH
Q 042473 144 LDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKR-------IASKIKKFVKAHNRHSQMQDDLKRSQ 216 (408)
Q Consensus 144 ~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr-------~tSkiKKfvKah~r~~raQdeLKrsq 216 (408)
.+|..+....-.+...+..|+.++..|.+++.-|+....+++.++.- |..-+|++=....+=-..++.|+-.+
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E 82 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETE 82 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666666777777888888999999999999999999988887753 33344444444444455555565555
Q ss_pred HHHHHh
Q 042473 217 ARLQKL 222 (408)
Q Consensus 217 aRl~kl 222 (408)
.-|...
T Consensus 83 ~~~~~~ 88 (96)
T PF08647_consen 83 KEFVRK 88 (96)
T ss_pred HHHHHH
Confidence 555443
No 234
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=44.15 E-value=29 Score=33.45 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHH
Q 042473 139 LKEVQLDINVLEDRKLQLETNEEEKGQEADIL 170 (408)
Q Consensus 139 Lk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~L 170 (408)
|+.|..||+.+++|-.-||.+|..|-+|...|
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888888888887776655
No 235
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=43.98 E-value=3.5e+02 Score=28.26 Aligned_cols=7 Identities=43% Similarity=0.539 Sum_probs=2.6
Q ss_pred HHHHhhH
Q 042473 168 DILSSRI 174 (408)
Q Consensus 168 ~~Lssri 174 (408)
..+|..|
T Consensus 54 N~~sk~i 60 (418)
T TIGR00414 54 NELSKQI 60 (418)
T ss_pred HHHHHHH
Confidence 3333333
No 236
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=43.77 E-value=47 Score=26.90 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=29.4
Q ss_pred hhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042473 153 KLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIAS 193 (408)
Q Consensus 153 Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tS 193 (408)
|+.|...+- .|++.|-++|.+|+.+.+.-+.||..+-+
T Consensus 5 KtHLm~AVr---EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 5 KTHLMYAVR---EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp CCHGGGT-T---TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555655554 47899999999999999999999876643
No 237
>PF14282 FlxA: FlxA-like protein
Probab=43.69 E-value=74 Score=27.25 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
..|+.|++.+...|..|.+++. +--+.|-.-+.-|-..|..|+.||..
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~~~~---~~~e~k~~q~q~Lq~QI~~LqaQI~q 69 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQDSD---LDAEQKQQQIQLLQAQIQQLQAQIAQ 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHcccC---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888877777777532 13344445557788888888888865
No 238
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=43.61 E-value=1.6e+02 Score=36.79 Aligned_cols=85 Identities=22% Similarity=0.180 Sum_probs=61.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQ 209 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQ 209 (408)
..=+.+..++.++...|..|.++|.+|...|+.+-.|+..|.+-|.+|-.||.. .+ ++..-+-.|.-.+|
T Consensus 101 ~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~s-------s~---~~~~e~e~r~~e~~ 170 (1822)
T KOG4674|consen 101 WEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKS-------ST---KTLSELEARLQETQ 170 (1822)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHH
Confidence 333455566777788888889999999999988888888888888888777665 33 33334446666777
Q ss_pred HHHHHHHHHHHHhhh
Q 042473 210 DDLKRSQARLQKLGY 224 (408)
Q Consensus 210 deLKrsqaRl~kl~d 224 (408)
...-.+|.++++|..
T Consensus 171 s~~vs~q~k~~rl~Q 185 (1822)
T KOG4674|consen 171 SEDVSSQLKEERLEQ 185 (1822)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777778888888764
No 239
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=43.60 E-value=71 Score=30.93 Aligned_cols=17 Identities=47% Similarity=0.522 Sum_probs=10.0
Q ss_pred hhHHHHhhHHHHHHHHH
Q 042473 166 EADILSSRIKELETQLQ 182 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~ 182 (408)
|..+-.|||.|||.||.
T Consensus 133 e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 133 ERIAYESRIADLERQLN 149 (196)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455566666666665
No 240
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=43.50 E-value=87 Score=28.55 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQ 155 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~ 155 (408)
+++.|.+||.++..|+.+|+-+|..
T Consensus 13 ~ke~L~~ql~dLK~ELa~LRv~K~t 37 (123)
T KOG3436|consen 13 SKEQLLKQLDDLKVELAQLRVAKVT 37 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5689999999999999999999966
No 241
>PRK12705 hypothetical protein; Provisional
Probab=43.15 E-value=4.6e+02 Score=28.67 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=36.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKE 184 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kE 184 (408)
..+..+|..+++-+.++..+..+-.+.|..|+.+...+......+...+.+|...
T Consensus 63 ~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~ 117 (508)
T PRK12705 63 RERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSAR 117 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888877777777777778877776666555555544444433
No 242
>PF13864 Enkurin: Calmodulin-binding
Probab=43.09 E-value=20 Score=29.93 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q 042473 132 KVVLLEQLKEVQLDINVLEDR 152 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~ 152 (408)
|..||.||++|..||+.|...
T Consensus 76 K~~lE~~L~qlE~dI~~lsr~ 96 (98)
T PF13864_consen 76 KEELEKELKQLEKDIKKLSRP 96 (98)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 588999999999999988654
No 243
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=42.90 E-value=1.1e+02 Score=31.99 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHhhhhhh
Q 042473 208 MQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l~ 227 (408)
+.++++..++.|..+...|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 85 LEAELDELEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 44555555555555554443
No 244
>PRK02119 hypothetical protein; Provisional
Probab=42.74 E-value=1.3e+02 Score=24.55 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=29.7
Q ss_pred HHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 146 INVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK 196 (408)
Q Consensus 146 ~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK 196 (408)
|..|.++-..||+-|----+-++.|+.-|.....+|..-+..|+.|+.+++
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666655444444556666666666666665555555555443
No 245
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.26 E-value=1.1e+02 Score=24.34 Aligned_cols=50 Identities=26% Similarity=0.324 Sum_probs=30.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 170 LSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 170 Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
|..||.+||.+|+=-.+-+..|- ..+.+-|.++.+-+..|..|.+.|.+-
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln----------~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELN----------DVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888888776555554443 234556667777777777777777653
No 246
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=41.79 E-value=1.4e+02 Score=27.95 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=46.5
Q ss_pred chhhccccCCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 119 DRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 119 d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
+.++.|-....=+...++.+|.+.+.++..+..+...++..++. .+.|-.+ .++| ...|
T Consensus 46 ~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-----------~~~L~~~---------~~~s-~~~~ 104 (322)
T TIGR01730 46 QKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFER-----------AERLVKR---------NAVS-QADL 104 (322)
T ss_pred CEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHC---------CCcC-HHHH
Confidence 67777766544455677888887777776665543333332221 1111110 0111 1234
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 199 VKAHNRHSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 199 vKah~r~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
-.++..+..++..|+.+++.|+.+-..+..
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 134 (322)
T TIGR01730 105 DDAKAAVEAAQADLEAAKASLASAQLNLRY 134 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444555556666666666666666655543
No 247
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.70 E-value=1.9e+02 Score=32.59 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhhhH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKE---ESKRIASKIKKFVKAHNRHSQMQD 210 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEke---eCkr~tSkiKKfvKah~r~~raQd 210 (408)
+.++.++...-=++.|..+-+.|+..+++.-.|+..|-+++..+-..+..+.- +-.-+-.+|-+|-+....=-+--+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666777777777777777766666666665554433332111 111123344444444433333445
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 042473 211 DLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 211 eLKrsqaRl~kl~d~l~s 228 (408)
+|++-=++|.+|=.+..|
T Consensus 499 ~L~~~l~~l~k~~~lE~s 516 (652)
T COG2433 499 ELERKLAELRKMRKLELS 516 (652)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 565555555555444333
No 248
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=41.60 E-value=1.2e+02 Score=31.31 Aligned_cols=63 Identities=29% Similarity=0.335 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHH-------------------------hhHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILS-------------------------SRIKELETQLQKEKEE 187 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Ls-------------------------sri~eLe~qL~kEkee 187 (408)
+.||.||.-....|+.|..+-..|...||.--.++.... +++.+|.++.++|-||
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynkevee 177 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNKEVEE 177 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHHHHHH
Confidence 568888888888888888888888888877655554222 7788888888888888
Q ss_pred HHHHHHHH
Q 042473 188 SKRIASKI 195 (408)
Q Consensus 188 Ckr~tSki 195 (408)
-||+--.+
T Consensus 178 rkrle~e~ 185 (307)
T PF10481_consen 178 RKRLEAEV 185 (307)
T ss_pred HhhHHHHH
Confidence 77764433
No 249
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.52 E-value=3.1e+02 Score=30.58 Aligned_cols=60 Identities=23% Similarity=0.269 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIA 192 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~t 192 (408)
..|.+||.+++.=.-.|..+|..|...|+---+=...|..++.+|+..|..-++-|+.-.
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~ 222 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS 222 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578999999999999999999999888888888888999999999999988887655443
No 250
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=41.51 E-value=89 Score=33.86 Aligned_cols=31 Identities=6% Similarity=0.131 Sum_probs=21.4
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 197 KFVKAHNRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 197 KfvKah~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
++..++..|-.++.+|....++.+.|...|.
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777777777777776553
No 251
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=41.48 E-value=3.2e+02 Score=26.00 Aligned_cols=31 Identities=6% Similarity=0.067 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEE 161 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~le 161 (408)
..+.|++.=..|..||+.-..-|.+.+..+.
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~ 108 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAARLKQEADAAVA 108 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665555555544443
No 252
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.34 E-value=2.1e+02 Score=31.69 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=12.2
Q ss_pred CCcccccCCCCCCCcccCCCC
Q 042473 239 DSSINIMSDEETTNYHLVDPQ 259 (408)
Q Consensus 239 dsSini~sd~e~~~~~~~sp~ 259 (408)
.+++.|+....++ ..+++|+
T Consensus 404 ~~~~rIid~A~~p-~~P~~P~ 423 (726)
T PRK09841 404 IGNVRIIDPAVTQ-PQPVKPK 423 (726)
T ss_pred CCceeeccCCCCC-CCCCCch
Confidence 3677777544333 3678887
No 253
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.34 E-value=48 Score=35.82 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=17.9
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042473 164 GQEADILSSRIKELETQLQKEKEESKRIASKI 195 (408)
Q Consensus 164 ~~E~~~Lssri~eLe~qL~kEkeeCkr~tSki 195 (408)
-.|+..|+...+++|.+|..-++|-++|..++
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666665555555555554
No 254
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.33 E-value=2.6e+02 Score=30.07 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=5.2
Q ss_pred HHHHhhHHHHHHHH
Q 042473 168 DILSSRIKELETQL 181 (408)
Q Consensus 168 ~~Lssri~eLe~qL 181 (408)
+.+..+..+|..+|
T Consensus 379 sel~e~leel~e~l 392 (569)
T PRK04778 379 SELQEELEEILKQL 392 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 255
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=40.81 E-value=1.3e+02 Score=25.64 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=36.2
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhh
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGY 224 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d 224 (408)
++.|+|-|++|..++..--.+-+-|.+.++ -|++|--|+-.||...+.
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~~q----------AAk~eaarAn~rldn~a~ 74 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSDVQ----------AAKDEAARANQRLDNQAQ 74 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhHhHHHHHHHHHHHHHH
Confidence 577888888888888875555555666543 489999999999987653
No 256
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.61 E-value=3.3e+02 Score=29.77 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=28.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 128 PSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 128 ~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
+.|-=-.|=.|+|+++.++..|..+-..|...- ..|-.|-+.++.|++.
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN-------~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAEN-------ERLQKREQSIDQQIQQ 105 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHHH
Confidence 334444566788888888887776655553222 3444555555555544
No 257
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.56 E-value=3e+02 Score=25.40 Aligned_cols=23 Identities=0% Similarity=-0.116 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhccC
Q 042473 211 DLKRSQARLQKLGYHLGLDATKV 233 (408)
Q Consensus 211 eLKrsqaRl~kl~d~l~sd~~k~ 233 (408)
+...+...|+.++..|+.+|+.+
T Consensus 139 ~k~~a~~~l~~~a~~lA~~i~~k 161 (181)
T PRK13454 139 IRAGALESVEEVAKDTAEALVAA 161 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667899999999999554
No 258
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=40.54 E-value=1.8e+02 Score=28.35 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
+++.|.++..-...|.++.-+|-.-...=--|...|...|..|..+..+-+.++..+-.+++-+
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 3444555555555555555544443333333444455555555554444444444444444433
No 259
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.04 E-value=2.7e+02 Score=26.99 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 042473 135 LLEQLKEVQLDINVLEDRKLQL 156 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~L 156 (408)
..++.|.++.+|+.|+..+..+
T Consensus 98 ~~k~~k~~e~~~~k~~K~~~~~ 119 (233)
T cd07649 98 FKKDMKKLDHHIADLRKQLASR 119 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666443
No 260
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=39.96 E-value=3.9e+02 Score=28.41 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHhh--------hhhhHhHHhhhhhh-hHHHHhhHH
Q 042473 133 VVLLEQLKEVQLDINVLEDR--------KLQLETNEEEKGQE-ADILSSRIK 175 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~--------Ks~LE~~leeK~~E-~~~Lssri~ 175 (408)
..+...+..+..++..|..+ ...|+..|+++..| .+++..+..
T Consensus 247 ~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~ 298 (582)
T PF09731_consen 247 SDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELE 298 (582)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777666653 33455555666555 444444443
No 261
>PF13514 AAA_27: AAA domain
Probab=39.77 E-value=4.6e+02 Score=30.55 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILS--SRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQM 208 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Ls--sri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~ra 208 (408)
+.+.++..|.++..+++.|..+...|...+-....++..|. ..+.+|..++.. ....|...++-|..+.-|
T Consensus 890 d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~-------~~a~l~~~~~~~~~~~la 962 (1111)
T PF13514_consen 890 DPDELEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREE-------AEAELEELAEEWAALRLA 962 (1111)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544444443333333333332 123333333333 444444444444444434
Q ss_pred hHHHHHH--------HHHHHHhhhhhhhhhcc
Q 042473 209 QDDLKRS--------QARLQKLGYHLGLDATK 232 (408)
Q Consensus 209 QdeLKrs--------qaRl~kl~d~l~sd~~k 232 (408)
..=|.++ |..+.+-+..+.+.+|.
T Consensus 963 ~~lL~~a~~~~r~~~~p~vl~~As~~f~~LT~ 994 (1111)
T PF13514_consen 963 AELLEEAIERYREERQPPVLARASEYFSRLTG 994 (1111)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 3333333 34444455555555443
No 262
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=39.68 E-value=3.6e+02 Score=27.82 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=31.5
Q ss_pred hhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 151 DRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 151 d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
.+-..|.-.|..|..|....-.-|.-|=+||..-+.-||-++.-.-++..
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q 262 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQ 262 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34455666777777777666666666666666666666666655444443
No 263
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=39.46 E-value=3e+02 Score=25.12 Aligned_cols=95 Identities=23% Similarity=0.215 Sum_probs=60.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhh-------------------hhhhHHHHhhHHHHH--------HHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEK-------------------GQEADILSSRIKELE--------TQLQ 182 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK-------------------~~E~~~Lssri~eLe--------~qL~ 182 (408)
++=+.||+||+.+..-+..|..+-..|-..+.+= +..+.....++.++- ..|.
T Consensus 31 ~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~ 110 (236)
T PF09325_consen 31 DYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEEETLG 110 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4457889999999988888888776665544322 222222222222222 2233
Q ss_pred HHHHHHHHHHHHHHHHHH----HhhhhhhhhHHHHHHHHHHHHhhh
Q 042473 183 KEKEESKRIASKIKKFVK----AHNRHSQMQDDLKRSQARLQKLGY 224 (408)
Q Consensus 183 kEkeeCkr~tSkiKKfvK----ah~r~~raQdeLKrsqaRl~kl~d 224 (408)
---.++-+++--+|.-+. ++.-|..|+.+|.+.++.++||--
T Consensus 111 ~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~ 156 (236)
T PF09325_consen 111 EPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKA 156 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344567777777776654 346677888999999999888753
No 264
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=39.41 E-value=5.1e+02 Score=27.81 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhH-------hHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLE-------TNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF------- 198 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE-------~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf------- 198 (408)
...+.||..++-||..+..+....| .-|+.=..-+..|..++.....--....++|.-.-++++.+
T Consensus 30 ~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~ 109 (522)
T PF05701_consen 30 KEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEE 109 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhccc
Confidence 3466677777777777766444333 33333333344444444433333233344555555555444
Q ss_pred ---------HHHhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 199 ---------VKAHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 199 ---------vKah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
-.+..+|..+-.+|.....-|++|=.++++-
T Consensus 110 ~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~ 149 (522)
T PF05701_consen 110 ASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASA 149 (522)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346788888888999999999888888764
No 265
>PRK12704 phosphodiesterase; Provisional
Probab=39.14 E-value=4.6e+02 Score=28.40 Aligned_cols=73 Identities=14% Similarity=0.238 Sum_probs=39.2
Q ss_pred hHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH---HHHhhhhhhhhh
Q 042473 158 TNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQAR---LQKLGYHLGLDA 230 (408)
Q Consensus 158 ~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaR---l~kl~d~l~sd~ 230 (408)
..|+.+.+++.+....+...+..|.+.++++..+-..+.+++......+.-.--|-..||| |+.+-+++--++
T Consensus 96 e~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~ 171 (520)
T PRK12704 96 ENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEA 171 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555666666666666666665555555444445555666 555555554443
No 266
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=38.63 E-value=1.5e+02 Score=24.07 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
+..++.-.+..++.|..+-......|.....|..+|.+.|..|..+|
T Consensus 17 ~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 17 LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555556666666666666666666666677766666665554
No 267
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.32 E-value=2.2e+02 Score=28.88 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=24.6
Q ss_pred HhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042473 160 EEEKGQEADILSSRIKELETQLQKEKEESKRIA 192 (408)
Q Consensus 160 leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~t 192 (408)
|++-+.|-..|-.++.+||..+..-+|.-++|-
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444558899999999999998887776653
No 268
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.23 E-value=2.2e+02 Score=31.16 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHH
Q 042473 138 QLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKE 184 (408)
Q Consensus 138 QLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kE 184 (408)
++.+.+..+..|+.+..+|....-++--.+-.|..+|++|+.|+..|
T Consensus 289 ~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e 335 (754)
T TIGR01005 289 LIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSE 335 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555556666777777888888877654
No 269
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.15 E-value=2.1e+02 Score=31.14 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQL 156 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~L 156 (408)
..++.+|..+..|++.|.++-.+|
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666655
No 270
>PLN02678 seryl-tRNA synthetase
Probab=38.10 E-value=1.4e+02 Score=31.85 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhh
Q 042473 206 SQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 206 ~raQdeLKrsqaRl~kl~d~l 226 (408)
..+.++|+..+..|..+.-.|
T Consensus 88 ~~le~~~~~~~~~l~~~~~~i 108 (448)
T PLN02678 88 TEKEAEVQEAKAALDAKLKTI 108 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334445555555555444433
No 271
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=38.07 E-value=2.6e+02 Score=28.59 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHH
Q 042473 172 SRIKELETQLQKEKEESKR---IASKIKKFVKAH---NRHSQMQDDLKRSQARLQK 221 (408)
Q Consensus 172 sri~eLe~qL~kEkeeCkr---~tSkiKKfvKah---~r~~raQdeLKrsqaRl~k 221 (408)
++|++|=..|.+-+--|.- |..+++-|=.+| ..|...=..|...|+.++.
T Consensus 295 ~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~ 350 (388)
T PF04912_consen 295 SKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQS 350 (388)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444442 677888888888 4444444455555555543
No 272
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=37.96 E-value=1.4e+02 Score=26.41 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=22.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQ 216 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsq 216 (408)
.|...+..-|..|.+-..|-.-++++=.-++| |+-..|+||.-++
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~k---RV~~LQ~El~~~~ 74 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTK---RVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 34444444444444444444444444444443 5555677776443
No 273
>PRK04406 hypothetical protein; Provisional
Probab=37.90 E-value=1.7e+02 Score=24.00 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=33.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
.|.+||.+||.+|+=-.+-+..+- .-+.+-|-++-+-++.|..|.+.|.+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN----------~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELN----------DALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588999999999887444333321 22344555666667778888888865
No 274
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=37.65 E-value=4.1e+02 Score=26.14 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=10.8
Q ss_pred hhhHHHHHHHHHHHHhhhhh
Q 042473 207 QMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 207 raQdeLKrsqaRl~kl~d~l 226 (408)
.++..++.+++.|+..-..|
T Consensus 187 ~~~a~~~~~~a~l~~a~~~l 206 (346)
T PRK10476 187 ALVAQRAAREAALAIAELHL 206 (346)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 34455556666665554444
No 275
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=37.20 E-value=2.8e+02 Score=25.29 Aligned_cols=52 Identities=33% Similarity=0.438 Sum_probs=36.5
Q ss_pred HHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 144 LDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 144 ~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
.|-+++.|--..|+..+++|+ +-+..=|..||..+..-++|=+||+.+.|.+
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~---~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~ 73 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKA---DNIAKVIKNLEADIEAIKAEIKRLQERKKSI 73 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666556677777774 5566667888888888888888887766544
No 276
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=37.02 E-value=4.7e+02 Score=27.05 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=59.6
Q ss_pred HHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 042473 145 DINVLEDRKLQLETNEEEKGQEADILSSRIKE---LETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQK 221 (408)
Q Consensus 145 D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~e---Le~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~k 221 (408)
-+.+|..+...++..+..-+. ..+.+..++ |+.|++--..+-..+.++..++=+....|.++|-|+.-.+.-++-
T Consensus 314 ~~~~~~~q~~~~~~~~~~e~~--~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 314 QLVALEAQLAELRQQIAAELR--QILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred HHHhHHHHHHHHHHHHHHHHH--HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433322 223333333 555555555555558888888888889999999988888887777
Q ss_pred hhhhhhhhhccCCCCCCCCcccccCCCCCCC
Q 042473 222 LGYHLGLDATKVGGNEEDSSINIMSDEETTN 252 (408)
Q Consensus 222 l~d~l~sd~~k~g~needsSini~sd~e~~~ 252 (408)
|-...=...... +-...++.|++.-.++.
T Consensus 392 lL~r~qe~~~~~--~~~~~n~rvIs~A~~P~ 420 (458)
T COG3206 392 LLQRYQELSIQE--ASPIGNARVISPAVPPL 420 (458)
T ss_pred HHHHHHHHHHhh--cCCCCceeEeccccCCC
Confidence 655443332222 33344556665555443
No 277
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=36.96 E-value=5.6e+02 Score=27.53 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHh-------HHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLET-------NEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH-NR 204 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~-------~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah-~r 204 (408)
+.-.++|..|+.++.++.+.|..-.. .++....-|..|+..|..|-.-|...+..|.---......+-+. ..
T Consensus 133 ~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~ 212 (522)
T PF05701_consen 133 DSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQD 212 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888887777765433 33444444555555555555555444444433222222222222 34
Q ss_pred hhhhhHHHHHHHHHHHHhhhhh
Q 042473 205 HSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 205 ~~raQdeLKrsqaRl~kl~d~l 226 (408)
....+.+|+.++..++.|-.++
T Consensus 213 ~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 213 AEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888888888777
No 278
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=36.92 E-value=11 Score=41.05 Aligned_cols=55 Identities=29% Similarity=0.342 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhh---hhhhHHHHhhHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEK---GQEADILSSRIKELETQLQKEKEE 187 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK---~~E~~~Lssri~eLe~qL~kEkee 187 (408)
+.+..|++..+.++..|.+.+..||-.|..- -..+..+...|.+|+.++..+...
T Consensus 328 ~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~ 385 (713)
T PF05622_consen 328 EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRR 385 (713)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999888652 223445556677777777665543
No 279
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=36.89 E-value=3.4e+02 Score=28.64 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLET 158 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~ 158 (408)
.-..|++||++++..+..+++++.-|+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 99 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKA 99 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666665555544
No 280
>PRK14150 heat shock protein GrpE; Provisional
Probab=36.81 E-value=1.7e+02 Score=27.82 Aligned_cols=31 Identities=42% Similarity=0.458 Sum_probs=19.3
Q ss_pred hhhHhHHhhhhhhhHHHHhhHHHHHHHHHHH
Q 042473 154 LQLETNEEEKGQEADILSSRIKELETQLQKE 184 (408)
Q Consensus 154 s~LE~~leeK~~E~~~Lssri~eLe~qL~kE 184 (408)
.+.+.-..+..+++..+...|.+|+.+|...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~ 53 (193)
T PRK14150 23 QQEEADEAELEDELDEADARIAELEAQLAEA 53 (193)
T ss_pred hhhhhcccccchhhhhhHHHHHHHHHHHHHH
Confidence 4445555555566666677777777777653
No 281
>PHA03332 membrane glycoprotein; Provisional
Probab=36.62 E-value=1.3e+02 Score=36.07 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhh---
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHS-QMQ--- 209 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~-raQ--- 209 (408)
++.+.+..+.+=+..|-+--.+|-+.|+++|+|+ ++||.+||.+++.--.+ +++.|+++----++.+ -+-
T Consensus 902 ~tNaAV~~lsDai~klGnti~kisatl~~nI~av---NgRIs~Led~VN~r~~~---v~~~intLA~ql~~~~~~~N~~i 975 (1328)
T PHA03332 902 GLNARVDKTSDVITKLGDTIAKISATLDNNIRAV---NGRVSDLEDQVNLRFLA---VATNFNTLATQLKELGTTTNERI 975 (1328)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHh---cccHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhhHHHHH
Confidence 3444455555555555566677788899998776 68999999998873221 2333333221111000 011
Q ss_pred HHHHHHH---HHHHHhhhhhhhhhccCCCC
Q 042473 210 DDLKRSQ---ARLQKLGYHLGLDATKVGGN 236 (408)
Q Consensus 210 deLKrsq---aRl~kl~d~l~sd~~k~g~n 236 (408)
|+.-+++ ..|.-|..+++--++|-++.
T Consensus 976 e~~~aaalyYQQlnsltnqv~~saskL~~q 1005 (1328)
T PHA03332 976 EEVMAAALYYQQLNSLTNQVTQSASKLGYQ 1005 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 1222222 24677888888887776554
No 282
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=36.50 E-value=1.1e+02 Score=29.50 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhc
Q 042473 182 QKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDAT 231 (408)
Q Consensus 182 ~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~~ 231 (408)
.....++.++-.+|||+||-.+.|+-|=.++-.||--|-.--..|.-+-+
T Consensus 5 ~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~ 54 (207)
T cd07602 5 HEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECI 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344555688999999999999999999999988888776666665533
No 283
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=36.37 E-value=4e+02 Score=25.66 Aligned_cols=90 Identities=11% Similarity=0.235 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhh-hhhhHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh----hhhhhh
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEK-GQEADILSSRIKELETQLQ---KEKEESKRIASKIKKFVKAH----NRHSQM 208 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK-~~E~~~Lssri~eLe~qL~---kEkeeCkr~tSkiKKfvKah----~r~~ra 208 (408)
+.+..|...++.+..+ |+..|... +.=+..+.+-+.++...+. .-+-++-|+..+.+|+..-- ..+-+|
T Consensus 68 ~~~~~v~e~~d~~~~~---l~~~l~~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~kde~KL~ka 144 (211)
T cd07588 68 EHLASIFEQLDLLWND---LEEKLSDQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEALKAKKKVDDQKLTKA 144 (211)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcccccHhhHHHH
Confidence 3445566666666665 32222221 2223444555555544443 34567888888888887542 567789
Q ss_pred hHHHHHHHHHHHHhhhhhhhh
Q 042473 209 QDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 209 QdeLKrsqaRl~kl~d~l~sd 229 (408)
+++|..|+.-++-|-++|..+
T Consensus 145 e~el~~Ak~~Ye~lN~~L~~E 165 (211)
T cd07588 145 EEELQQAKKVYEELNTELHEE 165 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998765
No 284
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=36.29 E-value=4.2e+02 Score=31.32 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQ 155 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~ 155 (408)
.+..+..+|+.+...++.+.+++..
T Consensus 314 ~~~~~~~~l~~~~~~L~~i~~~~~~ 338 (1201)
T PF12128_consen 314 ELSALNADLARIKSELDEIEQQKKD 338 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544443
No 285
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=36.23 E-value=2.1e+02 Score=27.49 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=28.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLK 213 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLK 213 (408)
|..|-.++..++..|.|-.-.|+.|..--+-++.+-.-|+.|.++|.
T Consensus 4 v~~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g 50 (215)
T cd07604 4 VGALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLG 50 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 44455555566666666666666666666666666666666655543
No 286
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=36.02 E-value=2.3e+02 Score=26.93 Aligned_cols=47 Identities=32% Similarity=0.522 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 042473 173 RIKELETQLQKEKEESK-RIASKIKKFVKAHNRHSQMQDDLKRSQARL 219 (408)
Q Consensus 173 ri~eLe~qL~kEkeeCk-r~tSkiKKfvKah~r~~raQdeLKrsqaRl 219 (408)
+|.+|+-||.=+..... .+.+-.+|-..|-..+-.+++|+.+-+.+|
T Consensus 140 ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 140 KIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445544443333332 345555555555566666666666555544
No 287
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=35.68 E-value=4.7e+02 Score=29.08 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=20.5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhh
Q 042473 128 PSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSR 173 (408)
Q Consensus 128 ~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssr 173 (408)
.++.+...|..|..+...++.-....++||+.+..=-+|+..|..+
T Consensus 83 ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~ 128 (546)
T KOG0977|consen 83 TSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKK 128 (546)
T ss_pred CcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445555555555544444444444444444443333333333333
No 288
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.56 E-value=1.1e+02 Score=30.18 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
-|+++|+.-+.+++.+..+..-|.-..+++.+|-+.|....+.|-.|+
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555554444444444
No 289
>PF13514 AAA_27: AAA domain
Probab=35.56 E-value=3.5e+02 Score=31.46 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLE 157 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE 157 (408)
...++.++.+++.|+..+..+-..|-
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~ 770 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALA 770 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665554443
No 290
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=35.40 E-value=2.7e+02 Score=30.59 Aligned_cols=51 Identities=22% Similarity=0.384 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCC
Q 042473 182 QKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNE 237 (408)
Q Consensus 182 ~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~~k~g~ne 237 (408)
..+++++..+...+..++.-+ -.++++.....|+.+.+.|...+-..++.+
T Consensus 593 ~~ere~i~~~l~~~~~WL~~~-----d~~~i~~k~~eL~~~l~~l~~k~y~~~~~~ 643 (663)
T PTZ00400 593 DADKDELKQKITKLRSTLSSE-----DVDSIKDKTKQLQEASWKISQQAYKQGNSD 643 (663)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 356678888888888888643 346788888888888888887654444433
No 291
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.22 E-value=4.8e+02 Score=29.63 Aligned_cols=26 Identities=27% Similarity=0.458 Sum_probs=10.4
Q ss_pred HHhhhhhhhHHHHhhHHHHHHHHHHH
Q 042473 159 NEEEKGQEADILSSRIKELETQLQKE 184 (408)
Q Consensus 159 ~leeK~~E~~~Lssri~eLe~qL~kE 184 (408)
.++++..|+..+-..+..+..+|..+
T Consensus 531 ~~e~~~~~~~~~~~e~~~~~~~l~~~ 556 (782)
T PRK00409 531 ELEQKAEEAEALLKEAEKLKEELEEK 556 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333333
No 292
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=35.20 E-value=5.5e+02 Score=29.16 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=11.0
Q ss_pred Ccchhhhh--hhhccc-CCCCC
Q 042473 4 RKFYKTRI--CVLYQK-GRCSR 22 (408)
Q Consensus 4 ~~~yKTkL--C~~f~~-G~C~~ 22 (408)
++.=||.| |..|-- |.++.
T Consensus 34 nGsGKSSIldAI~~ALyG~~~~ 55 (908)
T COG0419 34 NGAGKSSILDAITFALYGKTPR 55 (908)
T ss_pred CCCcHHHHHHHHHHHHcCCCCC
Confidence 34446665 556653 77774
No 293
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=35.05 E-value=69 Score=29.43 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=22.3
Q ss_pred CcchhhccccCCCch-hhhHHHHHHHHHHHHHHHHhhhhhhHhH
Q 042473 117 INDRVKERKFTPSDS-KVVLLEQLKEVQLDINVLEDRKLQLETN 159 (408)
Q Consensus 117 ~~d~~Kd~k~~~s~~-k~~leeQLk~v~~D~~~L~d~Ks~LE~~ 159 (408)
.+|+.+=-+|+-..+ ++.+...|+..+..++-|.|-...+|.+
T Consensus 16 ~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~ 59 (131)
T KOG1760|consen 16 FEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELL 59 (131)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 455655555533332 3455555665555555555555544443
No 294
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=34.85 E-value=52 Score=27.62 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=31.8
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042473 129 SDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASK 194 (408)
Q Consensus 129 s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSk 194 (408)
|=+++....-|.+|..++..|..+...|...+.+--.++..+......|...|...+..-..|...
T Consensus 17 GYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~ 82 (131)
T PF05103_consen 17 GYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAE 82 (131)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------------------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHH
Confidence 445677778899999999999999999988888777777777777777777776544444444333
No 295
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=34.41 E-value=2.5e+02 Score=26.70 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=36.7
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhhh---hhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDRK---LQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKA-H 202 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~K---s~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKa-h 202 (408)
..|-.+.-+|..+++...=++-...++ ..|--.|++--+..++|...+..|..++--+++ |+-.||- +
T Consensus 77 ~~S~~K~Pf~~~~k~~~~ifkegg~d~~k~~~~l~~L~e~snki~kLe~~~k~L~d~Iv~~~~--------i~e~IKd~d 148 (163)
T PF03233_consen 77 GLSKSKSPFESFFKDLSKIFKEGGGDKQKQLKLLPTLEEISNKIRKLETEVKKLKDNIVTEKL--------IEELIKDFD 148 (163)
T ss_pred ccccCCCcHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccHH--------HHHHHHHHH
Confidence 345556666666554433333221111 122223333333445555555555555544332 3333332 3
Q ss_pred hhhhhhhHHHHH
Q 042473 203 NRHSQMQDDLKR 214 (408)
Q Consensus 203 ~r~~raQdeLKr 214 (408)
.++-..||.+|+
T Consensus 149 e~L~~I~d~iK~ 160 (163)
T PF03233_consen 149 ERLKEIRDKIKK 160 (163)
T ss_pred HHHHHHHHHHHh
Confidence 556666777764
No 296
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.41 E-value=3.5e+02 Score=24.44 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhh
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEE 162 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~lee 162 (408)
+-.|+.+.+..+.++--+|.+||+.|.+
T Consensus 11 ~l~q~QqLq~ql~~~~~qk~~le~qL~E 38 (119)
T COG1382 11 QLAQLQQLQQQLQKVILQKQQLEAQLKE 38 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777766654
No 297
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=34.37 E-value=5.9e+02 Score=29.33 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH----hhhhhh
Q 042473 139 LKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK-------EKEESKRIASKIKKFVKA----HNRHSQ 207 (408)
Q Consensus 139 Lk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k-------EkeeCkr~tSkiKKfvKa----h~r~~r 207 (408)
......+++.|...|..||+.|.+-.+..-.+..++.++|..|.. -++-+.-+...++..--- -.++--
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~ 670 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 344555667777778888876666666666665555555555444 334344444444433111 134445
Q ss_pred hhHHHHHHHHHHHHhhhhhhh
Q 042473 208 MQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l~s 228 (408)
++.|++..+.++..|-..|.-
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777776666543
No 298
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=34.05 E-value=78 Score=22.90 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKI 195 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSki 195 (408)
-|-+.|+++..++..|-++||..+..+
T Consensus 23 ~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 23 SIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999988654
No 299
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=33.98 E-value=1.6e+02 Score=26.89 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
..-.+..+.+.++..|..+-..+ ..+..-..-.+|.-+++.|+.+|.+-+++..--.+++.+.++
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~i--S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~ 101 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAI--SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLS 101 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS---TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777776665544 445555556677778888888887766665555454444443
No 300
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=62 Score=29.72 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=45.4
Q ss_pred hhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhhhhhhhhHHHHHHHHHHHHhhh
Q 042473 161 EEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF----------------VKAHNRHSQMQDDLKRSQARLQKLGY 224 (408)
Q Consensus 161 eeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf----------------vKah~r~~raQdeLKrsqaRl~kl~d 224 (408)
+.+|++.+++.+|+.+|..-|.-.|++|+-|---.--. |=+|.-.-..|+-|+.+.-++++-.+
T Consensus 19 Qq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~ 98 (131)
T KOG1760|consen 19 QQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIE 98 (131)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHH
Confidence 45788888999999988888888888777664322111 11233345677778877777777666
Q ss_pred hhhh
Q 042473 225 HLGL 228 (408)
Q Consensus 225 ~l~s 228 (408)
.|-|
T Consensus 99 ~les 102 (131)
T KOG1760|consen 99 ELES 102 (131)
T ss_pred HHHH
Confidence 6544
No 301
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=33.86 E-value=3.3e+02 Score=30.16 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=12.8
Q ss_pred hhHHHHhhHHHHHHHHHH
Q 042473 166 EADILSSRIKELETQLQK 183 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~k 183 (408)
-+..+..|+..||.+|..
T Consensus 379 ~~~~~~~~l~~le~~l~~ 396 (656)
T PRK06975 379 SVHQLDSQFAQLDGKLAD 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346677777778777776
No 302
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=33.84 E-value=5e+02 Score=28.98 Aligned_cols=61 Identities=26% Similarity=0.323 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHhhhhhhhhhcc----CCCCCCCCcccccCCCCCCC
Q 042473 189 KRIASKIKKFVKAH-NRHSQMQDDLKRSQARLQKLGYHLGLDATK----VGGNEEDSSINIMSDEETTN 252 (408)
Q Consensus 189 kr~tSkiKKfvKah-~r~~raQdeLKrsqaRl~kl~d~l~sd~~k----~g~needsSini~sd~e~~~ 252 (408)
.+|.+++-++-|.- -+=+.||.-.+--+-.|+++- -|+-.|+. .|-|.-|++..| |.|-+|
T Consensus 385 ~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~-sl~~~i~~~~~~i~~~~nd~~l~i--N~E~~~ 450 (622)
T COG5185 385 DKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYD-SLIQNITRSRSQIGHNVNDSSLKI--NIEQLF 450 (622)
T ss_pred HHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHhcccHHHHhhcCCCCceee--ccccCC
Confidence 34777777777653 455556655554444444432 23333333 356667777655 434443
No 303
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=33.80 E-value=5e+02 Score=25.99 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHh----HHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLET----NEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHN 203 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~----~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~ 203 (408)
+...|.++.+++...+..|-..--++=+ .+..-..+...+.+.+..|..+|.+-++.|+...++..+....++
T Consensus 15 Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~ 91 (338)
T PF04124_consen 15 EPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERK 91 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665443322211 123334556778889999999999999999988887777666543
No 304
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=33.47 E-value=4.3e+02 Score=30.25 Aligned_cols=53 Identities=15% Similarity=0.332 Sum_probs=34.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~ 223 (408)
..|-.+....+.+|-.-++.|--..+.+.+|- .-..+||+|+.+.--.|.+++
T Consensus 569 ~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~---~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 569 EDLQIELEKSEAKLEQIQEQYAELELELEIEK---FKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 44555555566666666666666666666653 344578888888777777664
No 305
>PF13166 AAA_13: AAA domain
Probab=33.30 E-value=6.5e+02 Score=27.15 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhh
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKG 164 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~ 164 (408)
......++...+++|.+.-..|...|++|+
T Consensus 320 ~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~ 349 (712)
T PF13166_consen 320 FEEDKEELKSAIEALKEELEELKKALEKKI 349 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555554
No 306
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=33.26 E-value=4.8e+02 Score=29.03 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=16.9
Q ss_pred hhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042473 161 EEKGQEADILSSRIKELETQLQKEKEESKRIASKI 195 (408)
Q Consensus 161 eeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSki 195 (408)
...-.|..-+..|+..||..+..-+-+--||...|
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l 185 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREEL 185 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 33333444444555555555555555555554444
No 307
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.26 E-value=2.5e+02 Score=30.86 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=17.6
Q ss_pred CCCCCCchhhhhhhccCCCCCC-cccCccccCC
Q 042473 84 SRSPENKSDRKRWKKQHLDGPR-EFSASLKISD 115 (408)
Q Consensus 84 SRs~~~kser~h~kk~d~dg~~-d~s~sl~~sd 115 (408)
+--|+-.|+.+|+=.+=..+-. ..+-+|..+|
T Consensus 180 l~dpi~~sd~~~~ld~wg~~~~t~~df~f~~t~ 212 (521)
T KOG1937|consen 180 LNDPIPNSDPRKWLDQWGNSSHTEKDFNFKLTD 212 (521)
T ss_pred hcCcccccchhhHHHHHhccCCccccccceecC
Confidence 3345666666666555444433 3666677664
No 308
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=33.22 E-value=1.9e+02 Score=30.13 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 042473 135 LLEQLKEVQLDINVLEDRKLQL 156 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~L 156 (408)
+.++.+++...++.|+.++-.+
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~ 56 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNEL 56 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444433
No 309
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=32.88 E-value=5.9e+02 Score=26.54 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=27.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042473 170 LSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHS 206 (408)
Q Consensus 170 Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~ 206 (408)
.-..+.+.+..+..+++.|..-...+.-|..-|-.|.
T Consensus 309 yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~ 345 (412)
T PF04108_consen 309 YLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGFL 345 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888999999888887776655554443
No 310
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.36 E-value=5.8e+02 Score=29.11 Aligned_cols=92 Identities=22% Similarity=0.332 Sum_probs=60.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhH----------------------hHHhhhhhhhHHHHhhHHHHHHH-------H
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLE----------------------TNEEEKGQEADILSSRIKELETQ-------L 181 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE----------------------~~leeK~~E~~~Lssri~eLe~q-------L 181 (408)
.|.+|+.|+.+++.+.+.++.+-.++. ..|++...--..+.-+|-+||.. |
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el 123 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQEL 123 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888999998888887776655543 34444443334455667666654 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhhhhhHHHHHHHHHHHHh
Q 042473 182 QKEKEESKRIASKIKKFVKAH----NRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 182 ~kEkeeCkr~tSkiKKfvKah----~r~~raQdeLKrsqaRl~kl 222 (408)
...++|-.||++..-+|..-- .--.|+.+|||--.-|=.||
T Consensus 124 ~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rl 168 (772)
T KOG0999|consen 124 TNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARL 168 (772)
T ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999888886543 23356677777655554443
No 311
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.34 E-value=4.4e+02 Score=31.70 Aligned_cols=114 Identities=25% Similarity=0.305 Sum_probs=71.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHH-------HHHHHH----HH
Q 042473 129 SDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESK-------RIASKI----KK 197 (408)
Q Consensus 129 s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCk-------r~tSki----KK 197 (408)
.++-.++..+++++..-+..|..+|-||+.--.+-+.+-..|.=+|.+|-.|+....+.-. .+-++| ..
T Consensus 264 ~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~E 343 (1200)
T KOG0964|consen 264 EDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDE 343 (1200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444667777777777777777777777665444444445566666666666655433221 122222 33
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcc
Q 042473 198 FVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSI 242 (408)
Q Consensus 198 fvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~~k~g~needsSi 242 (408)
+-+.--.|-..+++-++--.||-.|-+..-.=+.|-|---+-+|.
T Consensus 344 L~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk 388 (1200)
T KOG0964|consen 344 LSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSK 388 (1200)
T ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcH
Confidence 445556778888888888888888887766666777766666664
No 312
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=32.33 E-value=3.4e+02 Score=23.69 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHH
Q 042473 138 QLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELE 178 (408)
Q Consensus 138 QLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe 178 (408)
++..++.++..|..+...++.-+..=.+++.......++.+
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq 44 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQ 44 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433333334444444443333
No 313
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=32.30 E-value=4.4e+02 Score=25.66 Aligned_cols=99 Identities=15% Similarity=0.247 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------H
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKEL-------ETQLQKEKEESKRIASKIKKFV-------K 200 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eL-------e~qL~kEkeeCkr~tSkiKKfv-------K 200 (408)
++++.+..+..+..-.+-...|+--+..--.|+..|..+..+| +.+-....++=..|..++..+- -
T Consensus 17 ~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~e 96 (246)
T PF00769_consen 17 MEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEE 96 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666655544444444444433333444444443333 3333333343334444444332 2
Q ss_pred Hh----hhhhhhhHHHHHHHHHHHHhhhhhhhhhccC
Q 042473 201 AH----NRHSQMQDDLKRSQARLQKLGYHLGLDATKV 233 (408)
Q Consensus 201 ah----~r~~raQdeLKrsqaRl~kl~d~l~sd~~k~ 233 (408)
+. ..-.+.|.+|..++..+.+--..|..-++.+
T Consensus 97 e~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 97 ESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAP 133 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 3345567788888888888777777665554
No 314
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=32.28 E-value=2.1e+02 Score=21.19 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
.+.|..|...|..|..-=..|-..+++...=++.|...+......|
T Consensus 3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l 48 (63)
T PF05739_consen 3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENL 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHH
Confidence 3456666666666666555555555555444444444444433333
No 315
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=32.16 E-value=5.4e+02 Score=29.69 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQM------ 208 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~ra------ 208 (408)
|..|.+.++-.+..-..+++-|...|+.|+.|+.-=-.....|-..|..+++++.+.-++++.-..+++.+..|
T Consensus 336 L~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~ 415 (739)
T PF07111_consen 336 LRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQ 415 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455555555555555544333344466678888999999888888666655443332
Q ss_pred -----hHHHHHHHHHHHHhhhhhh
Q 042473 209 -----QDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 209 -----QdeLKrsqaRl~kl~d~l~ 227 (408)
-..+..+-+||..|+.-|.
T Consensus 416 ~L~s~ma~ve~a~aRL~sL~~RlS 439 (739)
T PF07111_consen 416 WLESQMAKVEQALARLPSLSNRLS 439 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1346677778888777665
No 316
>PF13166 AAA_13: AAA domain
Probab=32.14 E-value=2.4e+02 Score=30.33 Aligned_cols=9 Identities=33% Similarity=0.892 Sum_probs=5.5
Q ss_pred CCCCcccCc
Q 042473 23 PTCSFAHGD 31 (408)
Q Consensus 23 ~~C~FAHGe 31 (408)
+.|+|-+..
T Consensus 256 ~~CpfC~q~ 264 (712)
T PF13166_consen 256 DTCPFCQQE 264 (712)
T ss_pred CcCCCCCCc
Confidence 357776664
No 317
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.01 E-value=8.2e+02 Score=27.94 Aligned_cols=52 Identities=27% Similarity=0.426 Sum_probs=37.9
Q ss_pred HHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 145 DINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK 196 (408)
Q Consensus 145 D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK 196 (408)
|+-.....-..|+..+++--.|.+.|...|.+|+..+.+-+.+|.+|--.++
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666677777777788888888888888888888888777666
No 318
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=31.99 E-value=4.4e+02 Score=27.40 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=67.0
Q ss_pred cccCccc---cCCCCcchhhccccCCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHH-H
Q 042473 106 EFSASLK---ISDGINDRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQ-L 181 (408)
Q Consensus 106 d~s~sl~---~sd~~~d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~q-L 181 (408)
+.||..- +.|| +.||.|-....=+..+.+..|.+.+.+|.+.+.....|+..+..- ..-|.-.+.+ |
T Consensus 59 ~VsG~V~eV~V~dn--q~Vk~Gd~L~~iD~~~y~~al~qAea~la~a~~~~~~~~a~~~~~-------~A~i~~a~a~~l 129 (352)
T COG1566 59 QVSGRVTEVNVKDN--QLVKKGDVLFRIDPRDYRAALEQAEAALAAAEAQLRNLRAQLASA-------QALIAQAEAQDL 129 (352)
T ss_pred cCceEEEEEEecCC--CEecCCCeEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 4555443 6654 788888888887888899999999999988888877777655433 2444444454 5
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHhhhhhhhhHHHHHHHH
Q 042473 182 QKEKEESKRIASKI-------KKFVKAHNRHSQMQDDLKRSQA 217 (408)
Q Consensus 182 ~kEkeeCkr~tSki-------KKfvKah~r~~raQdeLKrsqa 217 (408)
...+.+-.|-..=. .++-.+..-+-+|+-+|+.|++
T Consensus 130 ~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~~ 172 (352)
T COG1566 130 DQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQA 172 (352)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 55555555544433 2334555666666666666653
No 319
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.54 E-value=1.1e+02 Score=29.30 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 180 QLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 180 qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
||....+++.-+.+++.||||.-+.|+-|+.++-.++.-|-.--..+
T Consensus 2 ~i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f 48 (202)
T cd07606 2 QLQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEF 48 (202)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555888888888888888888888877887776555555
No 320
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=31.53 E-value=3.8e+02 Score=23.93 Aligned_cols=48 Identities=29% Similarity=0.320 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKE 186 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEke 186 (408)
.+||+.+++|-.+..-=--+|...|-++|+....| +.+++..|+.-+-
T Consensus 26 qeqik~~ql~s~vi~G~n~~l~k~L~eki~~Fh~I---LDd~~~~l~~sk~ 73 (105)
T PF11214_consen 26 QEQIKNNQLQSNVITGFNNQLQKQLSEKIHKFHSI---LDDTESKLNDSKW 73 (105)
T ss_pred HHHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 48999999999888877777888999998776654 7889999988544
No 321
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=31.52 E-value=6.1e+02 Score=26.30 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=23.3
Q ss_pred HhhhhhhhHHHHhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhh
Q 042473 160 EEEKGQEADILSSRIKELETQLQKE-------------KEESKRIASKIKKFVKAHNR 204 (408)
Q Consensus 160 leeK~~E~~~Lssri~eLe~qL~kE-------------keeCkr~tSkiKKfvKah~r 204 (408)
+..-..+++.|..-+.+++..+.+- .+-|..+..-+..|.+|+..
T Consensus 319 ~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~e 376 (432)
T smart00498 319 LKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEE 376 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666655441 22234555555555555543
No 322
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=31.22 E-value=5.2e+02 Score=25.39 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHH
Q 042473 141 EVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKE 186 (408)
Q Consensus 141 ~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEke 186 (408)
.++.+...|.+...+++..|+.+. ..+...+..|..+|..+++
T Consensus 215 ~~e~e~~~l~e~~~~~~~~le~~~---~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 215 AAEKEKEKLEEKQKEQEQMLEQQE---RSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554442 3444555555555555554
No 323
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=31.18 E-value=26 Score=36.80 Aligned_cols=23 Identities=35% Similarity=1.011 Sum_probs=20.3
Q ss_pred hhhhhcccCCCCC-CCCCcccCcc
Q 042473 10 RICVLYQKGRCSR-PTCSFAHGDA 32 (408)
Q Consensus 10 kLC~~f~~G~C~~-~~C~FAHGe~ 32 (408)
-+|.+|-.|.|.+ +.|.|-|-.-
T Consensus 162 ~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 162 HICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred ccccceeeccccccccccccccCC
Confidence 4899999999999 9999999543
No 324
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=31.12 E-value=5.5e+02 Score=31.42 Aligned_cols=66 Identities=21% Similarity=0.337 Sum_probs=47.6
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhhhhHHHHHHHHHHHHhhhhhhhhhc
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH-------NRHSQMQDDLKRSQARLQKLGYHLGLDAT 231 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah-------~r~~raQdeLKrsqaRl~kl~d~l~sd~~ 231 (408)
.+.....++.-||+++.+-+++|-.+.|+++-..-.+ ..++.+-+++|....+-+++|.....+|.
T Consensus 872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~in 944 (1294)
T KOG0962|consen 872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDIN 944 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344445677899999999999999999998765444 34556667777776667777777766653
No 325
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=31.10 E-value=3.9e+02 Score=23.94 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
+|..|+.+=-+++..+-.|...--.+...-++=+.+-+.|.+.++.|..|...--..|-.|-.+|--..+.-
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666655555555555555666666777777777777766666666666665555444
No 326
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=30.98 E-value=4.3e+02 Score=29.98 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.6
Q ss_pred CCCCCc
Q 042473 256 VDPQNE 261 (408)
Q Consensus 256 ~sp~n~ 261 (408)
+.+++.
T Consensus 637 ~~~Gd~ 642 (782)
T PRK00409 637 LKVGDE 642 (782)
T ss_pred CCCCCE
Confidence 444443
No 327
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.64 E-value=1.4e+02 Score=23.75 Aligned_cols=31 Identities=10% Similarity=0.348 Sum_probs=14.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
..|+.-|.....+|.+-+..|+.|..+++.+
T Consensus 21 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 21 EELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555566666654
No 328
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.42 E-value=19 Score=36.90 Aligned_cols=29 Identities=31% Similarity=0.764 Sum_probs=23.6
Q ss_pred chhhhhhhhcc-cCCCCC-CCCCcccCcccc
Q 042473 6 FYKTRICVLYQ-KGRCSR-PTCSFAHGDAEL 34 (408)
Q Consensus 6 ~yKTkLC~~f~-~G~C~~-~~C~FAHGe~EL 34 (408)
-|---+|..|. .|.|.| +.|.|-|--...
T Consensus 183 d~qpDicKdykeTgycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 183 DYQPDICKDYKETGYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred ecCchhhhhhHhhCcccccchhhhhhhhhhc
Confidence 35567999997 599999 999999976544
No 329
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.26 E-value=1.6e+02 Score=28.27 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 180 QLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 180 qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
+|....+++..|.+++-||+|..+.|+.|+-++-.|+--|-.--.+|
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~ 49 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDL 49 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455556666888888888888888888888887777666544444
No 330
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=30.08 E-value=2.5e+02 Score=27.42 Aligned_cols=59 Identities=27% Similarity=0.406 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhH--------------hHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLE--------------TNEEEKGQEADILSSRIKELETQLQKEKEESKRI 191 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE--------------~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~ 191 (408)
.+|..||++....+.....+...|. ..|..+.+|+.-|..+|..||..|..-++++-.+
T Consensus 34 v~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 34 VSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 4455566666655555555444433 3345555566666666666676666666655554
No 331
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.08 E-value=5.2e+02 Score=29.29 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=37.9
Q ss_pred HHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hh----hhhHHHHHHHHHH
Q 042473 148 VLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNR----HS----QMQDDLKRSQARL 219 (408)
Q Consensus 148 ~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r----~~----raQdeLKrsqaRl 219 (408)
.|..+|.+.-..|++=.+|...|..+-..|..++....+-++-|.-++++++..-.. .. +..+||++-+..|
T Consensus 569 ~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l 648 (717)
T PF10168_consen 569 LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 344444333333333333334444444444555555555555566666655444321 11 1234566666666
Q ss_pred HHhhhhhhh
Q 042473 220 QKLGYHLGL 228 (408)
Q Consensus 220 ~kl~d~l~s 228 (408)
+.|+..|..
T Consensus 649 ~~l~~si~~ 657 (717)
T PF10168_consen 649 QDLKASIEQ 657 (717)
T ss_pred HHHHHHHHH
Confidence 665554433
No 332
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=30.02 E-value=4.8e+02 Score=29.19 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=58.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhH------------------HHHhhHHHHHHHHHHHHHHHH
Q 042473 128 PSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEAD------------------ILSSRIKELETQLQKEKEESK 189 (408)
Q Consensus 128 ~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~------------------~Lssri~eLe~qL~kEkeeCk 189 (408)
....=++.|.||.-|..||+...++-.+|...-++.-.|++ .+.+-..+||.||.+
T Consensus 102 A~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~------ 175 (570)
T COG4477 102 AKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLEN------ 175 (570)
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH------
Confidence 34455777888888888888888877777666555444432 233445678888888
Q ss_pred HHHHHHHHHH---------HHhhhhhhhhHHHHHHHHHHHHhhhh
Q 042473 190 RIASKIKKFV---------KAHNRHSQMQDDLKRSQARLQKLGYH 225 (408)
Q Consensus 190 r~tSkiKKfv---------Kah~r~~raQdeLKrsqaRl~kl~d~ 225 (408)
|.+.+..|+ -|+..+..|++.+.+-++=+++.-.+
T Consensus 176 -i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L 219 (570)
T COG4477 176 -IEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSL 219 (570)
T ss_pred -HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666664 55666666666666666555544433
No 333
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.98 E-value=3.7e+02 Score=27.88 Aligned_cols=89 Identities=26% Similarity=0.359 Sum_probs=47.7
Q ss_pred chhhhHHHHHH-------HHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHH-
Q 042473 130 DSKVVLLEQLK-------EVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEK--EESKRIASKIKKFV- 199 (408)
Q Consensus 130 ~~k~~leeQLk-------~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEk--eeCkr~tSkiKKfv- 199 (408)
++|..|=.||. +++.|+.++-|+|..|.+ |-+..--++.-|..+|+--- ++| ||. =|-.+|
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~-------ERD~yk~K~~RLN~ELn~~L~g~~~-riv-DIDaLi~ 196 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVT-------ERDAYKCKAHRLNHELNYILNGDEN-RIV-DIDALIM 196 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhCCCCC-Ccc-cHHHHHH
Confidence 67776666654 455555555555555544 33444455554544443311 111 211 233333
Q ss_pred ---HHhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 200 ---KAHNRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 200 ---Kah~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
-.|.|+-.+|+|+.-+.+-+-|.-..|-
T Consensus 197 ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 197 ENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1346677889998888777777666554
No 334
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.89 E-value=1.9e+02 Score=31.39 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDL 212 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeL 212 (408)
.+|..++.+|+.++..-+++=+++......++.++..++....+.
T Consensus 218 ~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 262 (646)
T PRK05771 218 REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELER 262 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444343444433333
No 335
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=29.66 E-value=3.5e+02 Score=28.32 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 042473 181 LQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQK 221 (408)
Q Consensus 181 L~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~k 221 (408)
+.+-|--|+.++|-.|..|-.---++--+|+.|+--+||--
T Consensus 162 ~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnh 202 (389)
T KOG4687|consen 162 HEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNH 202 (389)
T ss_pred HHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhh
Confidence 34567789999999999999888899999999998888753
No 336
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=29.66 E-value=4.9e+02 Score=24.65 Aligned_cols=67 Identities=22% Similarity=0.342 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
|...-..+..+..++..++....+|+. ..+.+=+..+..-|.++|..+...+.++..|+-.||+=|-
T Consensus 118 R~~a~~~~q~a~~~l~kkr~~~~Kl~~--~~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~ 184 (224)
T cd07623 118 RVKVWQNWQNAQQTLTKKREAKAKLEL--SGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIE 184 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566677777777777777753 3344556677888889999999999999999888876443
No 337
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=29.47 E-value=3.1e+02 Score=22.26 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 177 LETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 177 Le~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
+-.+|....+++..++..|+..||.=
T Consensus 44 ~~~~l~~~~~~~~~~~~~i~~~lk~l 69 (117)
T smart00503 44 LREKLERLIDDIKRLAKEIRAKLKEL 69 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445666666665543
No 338
>PF15195 TMEM210: TMEM210 family
Probab=29.31 E-value=27 Score=31.02 Aligned_cols=12 Identities=42% Similarity=0.706 Sum_probs=5.3
Q ss_pred CCCCCCCCCCcC
Q 042473 391 LQFRLPPPLPIP 402 (408)
Q Consensus 391 ~p~~~p~ppp~~ 402 (408)
.|-+||||||+|
T Consensus 104 p~~pppppP~~p 115 (116)
T PF15195_consen 104 PEEPPPPPPPPP 115 (116)
T ss_pred CCCCCcCcCCCC
Confidence 333444444444
No 339
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=29.23 E-value=2.8e+02 Score=26.90 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Q 042473 174 IKELETQLQKEKEESKRI-----ASKIKKFVKAH 202 (408)
Q Consensus 174 i~eLe~qL~kEkeeCkr~-----tSkiKKfvKah 202 (408)
++.|+..|..-+-+|.-. .--|||+.+||
T Consensus 140 i~slk~EL~d~iKe~e~~emeLyyecMkkL~~a~ 173 (181)
T PF04645_consen 140 IESLKSELNDLIKEREIREMELYYECMKKLAKAH 173 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444444444322 23355555555
No 340
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=29.19 E-value=5.5e+02 Score=25.43 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=42.7
Q ss_pred hhhhhhHhHHhhhhhhh----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 151 DRKLQLETNEEEKGQEA----DILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 151 d~Ks~LE~~leeK~~E~----~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
++--.||+.|++.-..- ...+.++..|-.+|++ -..|.+=|..|....-+||-++-.|=.+|+|..+.+
T Consensus 21 d~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~-------~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h 93 (239)
T PF05276_consen 21 DEINRLENELDEARATFRRLLSESTKKLNELAKKLGS-------CIEKARPYYEARRKAKEAQQEAQKAALQYERANSMH 93 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555443332 2335566666666665 246666677777777788888888888888876654
No 341
>PLN02320 seryl-tRNA synthetase
Probab=29.17 E-value=2.2e+02 Score=31.07 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHhhhhh
Q 042473 208 MQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l 226 (408)
+.++|+..++.|+.+.-.|
T Consensus 149 le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 149 LEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3445555555555555444
No 342
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=28.98 E-value=3.3e+02 Score=29.84 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHH----HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 042473 134 VLLEQLKEVQLDI----NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQ 209 (408)
Q Consensus 134 ~leeQLk~v~~D~----~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQ 209 (408)
.|..+|..++.-+ -.+.++-..|-..|++-+.|++.|...++--+.+|..-++++..|-++=+.+--...-.-.++
T Consensus 9 ~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~ 88 (701)
T PF09763_consen 9 RLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLL 88 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH
Confidence 3445555555432 344566677888889999999999999999999999999999888887766655555444455
Q ss_pred HHHH
Q 042473 210 DDLK 213 (408)
Q Consensus 210 deLK 213 (408)
++|.
T Consensus 89 ~eL~ 92 (701)
T PF09763_consen 89 NELE 92 (701)
T ss_pred HHHH
Confidence 5443
No 343
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.63 E-value=7.4e+02 Score=26.38 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 175 KELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 175 ~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
+-+-..|..|+.-|+||--.+--++-+|
T Consensus 247 ~~~~~~LqEEr~R~erLEeqlNd~~elH 274 (395)
T PF10267_consen 247 QFILEALQEERYRYERLEEQLNDLTELH 274 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 344
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=28.62 E-value=4.6e+02 Score=23.94 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
+..--++..+..++...+.++.+|...-..+.+-+..+...|.+++.++...+++-..|+-.+|+
T Consensus 131 ~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~ 195 (236)
T PF09325_consen 131 DKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKK 195 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555433333445555666777777777777777777766665
No 345
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=28.60 E-value=5.7e+02 Score=30.46 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLE 150 (408)
Q Consensus 135 leeQLk~v~~D~~~L~ 150 (408)
||+||++.+.-|-.|+
T Consensus 97 lEddlk~~~sQiriLQ 112 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQ 112 (1265)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 346
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=28.58 E-value=2.9e+02 Score=25.69 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh---hhHhHHhhhhhhh-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKL---QLETNEEEKGQEA-DILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks---~LE~~leeK~~E~-~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
..++..|...+.|+..|..++. ++.-..++++.++ +.+-....+|..|+..-+++++.+..+++-
T Consensus 46 ~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 46 QEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555556666667766665432 2333333333321 445555666666666666666666655554
No 347
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=28.42 E-value=2.9e+02 Score=21.67 Aligned_cols=27 Identities=15% Similarity=0.312 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHhhhh
Q 042473 138 QLKEVQLDINVLEDRKLQLETNEEEKG 164 (408)
Q Consensus 138 QLk~v~~D~~~L~d~Ks~LE~~leeK~ 164 (408)
++.++...+..|...+..+...+....
T Consensus 13 ~~~~~~~~l~~L~~~~~~~~~~~~~~~ 39 (123)
T PF02050_consen 13 ELQEAEEQLEQLQQERQEYQEQLSESQ 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444445555555555555544444333
No 348
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.41 E-value=3.1e+02 Score=23.05 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHH
Q 042473 134 VLLEQLKEVQLDIN 147 (408)
Q Consensus 134 ~leeQLk~v~~D~~ 147 (408)
.|++-|+.+..=|+
T Consensus 5 ~le~al~rL~~aid 18 (89)
T PF13747_consen 5 SLEAALTRLEAAID 18 (89)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444333
No 349
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.15 E-value=3e+02 Score=25.17 Aligned_cols=46 Identities=30% Similarity=0.409 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHH
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEE 187 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkee 187 (408)
.++.++.||++....|+.|.. +.-.+..|...|.+|+.+....+++
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~-----------~~~d~eeLk~~i~~lq~~~~~~~~~ 73 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKK-----------SAKDNEELKKQIEELQAKNKTAKEE 73 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----------ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655 2333455666666666666544443
No 350
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.01 E-value=1.9e+02 Score=31.85 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
.+|..+-...|-..+...+|+..+..+|+-|+..|
T Consensus 444 ~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 444 RALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333333333444444444444444333
No 351
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=27.97 E-value=4.5e+02 Score=23.63 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhhhhhh
Q 042473 213 KRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 213 KrsqaRl~kl~d~l~sd~ 230 (408)
++=..||..||-.+..|.
T Consensus 101 ~kyk~rLk~LG~eVSddE 118 (136)
T PF04871_consen 101 KKYKERLKELGEEVSDDE 118 (136)
T ss_pred HHHHHHHHHcCCCccCCc
Confidence 344677888887777664
No 352
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.87 E-value=6.8e+02 Score=26.07 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 190 RIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 190 r~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
.|-.-+..|-.+..++..+|+..+.+++....+...|+
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~ 304 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELA 304 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455666666667777777777777777776666554
No 353
>PHA03395 p10 fibrous body protein; Provisional
Probab=27.86 E-value=2.8e+02 Score=24.05 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhhhhHhHH---hhhhhhhHHHHhhHHHHHHHHHH
Q 042473 139 LKEVQLDINVLEDRKLQLETNE---EEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 139 Lk~v~~D~~~L~d~Ks~LE~~l---eeK~~E~~~Lssri~eLe~qL~k 183 (408)
|-+|+.||+++.+.-.-|...+ +++...++.|+.++..+-+||..
T Consensus 6 Ll~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltt 53 (87)
T PHA03395 6 LLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDT 53 (87)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHH
Confidence 6678889988888777666443 46666777788777777777744
No 354
>PRK00295 hypothetical protein; Provisional
Probab=27.85 E-value=1.7e+02 Score=23.44 Aligned_cols=30 Identities=7% Similarity=0.161 Sum_probs=14.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
..|+.=|.....+|..-+..|+.|+.+++-
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445556555544
No 355
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=27.83 E-value=2.5e+02 Score=27.71 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=21.8
Q ss_pred cchhhccccCCCchhhhHHHHHHHHHHHHHH
Q 042473 118 NDRVKERKFTPSDSKVVLLEQLKEVQLDINV 148 (408)
Q Consensus 118 ~d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~ 148 (408)
.|.||.|-....=+-.+++.||.+.+.++..
T Consensus 66 Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~ 96 (310)
T PRK10559 66 NQLVKKGQVLFTIDQPRYQKALAEAEADVAY 96 (310)
T ss_pred cCEEcCCCEEEEECcHHHHHHHHHHHHHHHH
Confidence 3778887765554556788888888877654
No 356
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=27.78 E-value=5.9e+02 Score=24.99 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhh-------------------hhHHHHhhHHHHHHHHHHHH--------
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQ-------------------EADILSSRIKELETQLQKEK-------- 185 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~-------------------E~~~Lssri~eLe~qL~kEk-------- 185 (408)
+.||.||+.+..=++.|..+-..|=..+.+=.. .+..+..+|.+|-...+...
T Consensus 32 e~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l 111 (234)
T cd07665 32 ECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELL 111 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHHHHHHHHHH----HHHhhhhhhhhHHHHHHHHHHHHh
Q 042473 186 EESKRIASKIKKF----VKAHNRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 186 eeCkr~tSkiKKf----vKah~r~~raQdeLKrsqaRl~kl 222 (408)
+|--||..-||-- +|+|..|..||.+|.+=++.+.||
T Consensus 112 ~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl 152 (234)
T cd07665 112 ADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARL 152 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 357
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=27.72 E-value=2.8e+02 Score=21.13 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHHHHHHHhhhhh
Q 042473 173 RIKELETQLQKEKEESKRIASKIKKFVKAHN----RHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 173 ri~eLe~qL~kEkeeCkr~tSkiKKfvKah~----r~~raQdeLKrsqaRl~kl~d~l 226 (408)
++++|.-+|..|. .|-.-..++++++. -...||-.|.-|+.+++=|=+.|
T Consensus 2 ~l~~L~~ki~~E~----~i~~Gae~m~~~~~~~~k~~~~a~~~l~es~~ki~~L~~~L 55 (57)
T smart00742 2 RLEDLRRKIEKEL----KVKEGAENMRKLTSNDRKVLSEAQSMLRESNQKLDLLKEEL 55 (57)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888888875 46777788888872 56788999999999998876665
No 358
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.71 E-value=3.1e+02 Score=28.88 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNE 160 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~l 160 (408)
..++.+|..++..+++|..+..-|+.+.
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 81 RELEAELRDLEDRGDALKALAKFLEDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555554444443
No 359
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=27.44 E-value=2.9e+02 Score=22.30 Aligned_cols=35 Identities=34% Similarity=0.476 Sum_probs=19.2
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHN 203 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~ 203 (408)
|+...-+.|.+|+.+.....++ +...+.+|++.+.
T Consensus 16 el~r~l~~irelD~~~~~~~~~---~~~~~~~~~~~~~ 50 (105)
T PF12998_consen 16 ELQRNLTLIRELDAKSQDLLEE---LDQQIQKFIKNHG 50 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHhhcc
Confidence 4555556666666664443333 4455666666554
No 360
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=27.40 E-value=3.8e+02 Score=22.66 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=48.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhh-------hhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEE-------KGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHN 203 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~lee-------K~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~ 203 (408)
+-..++++|++.+.=.+.+...+..++.+... --.++..|..++..|+.+-..-...|..-..++...+..+.
T Consensus 31 d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~ 110 (213)
T cd00176 31 DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQ 110 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666655544444444445444433321 11356778888888888888877777777777777766666
Q ss_pred hhhhhhH
Q 042473 204 RHSQMQD 210 (408)
Q Consensus 204 r~~raQd 210 (408)
.|-.+.+
T Consensus 111 ~~~~~~~ 117 (213)
T cd00176 111 FFRDADD 117 (213)
T ss_pred HHHHHHH
Confidence 6544443
No 361
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=27.40 E-value=2.6e+02 Score=26.16 Aligned_cols=52 Identities=17% Similarity=0.305 Sum_probs=34.3
Q ss_pred hhHhHHh-hhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042473 155 QLETNEE-EKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHS 206 (408)
Q Consensus 155 ~LE~~le-eK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~ 206 (408)
+|+-+|+ +.+..|-.++.+++.|..-=.+.++++.-++.++..++.-|+.++
T Consensus 108 ~L~pvL~se~i~~vp~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii 160 (174)
T PF07426_consen 108 SLEPVLDSESIRNVPELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNKII 160 (174)
T ss_pred HhhhhcCcHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 345666667777777776666677777777777777777776554
No 362
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.36 E-value=2.9e+02 Score=28.72 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETN 159 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~ 159 (408)
..+.++|+++...++.|.++..+|+..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555555444444
No 363
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=27.29 E-value=5.3e+02 Score=24.22 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=39.3
Q ss_pred hhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhc
Q 042473 153 KLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDAT 231 (408)
Q Consensus 153 Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~~ 231 (408)
|++.|.+-+.-..|+.+|-..-+-.-+=-.+-..||-+|+.|+|... +-++.-+.++..|+.+++....
T Consensus 72 K~eFe~Y~~~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq----------~kv~~ME~~v~elas~m~~~~~ 140 (152)
T PF11500_consen 72 KEEFESYHEKAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQ----------EKVAEMERHVTELASQMASKRN 140 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcc
Confidence 55667777766677777765433333333334457888888877654 2233334455555555555433
No 364
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.19 E-value=4.8e+02 Score=27.88 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=21.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKKFVKA 201 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKa 201 (408)
.+..+++-|+.||+.-+.+|..|+-....+-+.
T Consensus 138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 138 HLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 344556667777777777777766666666443
No 365
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.06 E-value=3.6e+02 Score=25.98 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=30.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLK 213 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLK 213 (408)
.+-.-|.+||..|.+-.-.|+.|..-.|.++.+-.-|+..=.+++
T Consensus 6 ~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~ 50 (200)
T cd07639 6 EVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLA 50 (200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777777777777777777777777777766666664
No 366
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.04 E-value=3e+02 Score=28.59 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=14.1
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 201 AHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 201 ah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
+...+.++.++|+.-+++|..|-..|...
T Consensus 380 l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 380 LKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444555555555555555554433
No 367
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=27.02 E-value=1.4e+02 Score=30.64 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=11.6
Q ss_pred hHHHHhhHHHHHHHHHHHHHH
Q 042473 167 ADILSSRIKELETQLQKEKEE 187 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkee 187 (408)
++.|..||.+||..+..-...
T Consensus 146 i~e~Eeris~lEd~~~~i~~~ 166 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQA 166 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhhH
Confidence 344456666666666554443
No 368
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=26.99 E-value=3.1e+02 Score=28.01 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=35.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHH----hhhhhhhHHHHhhHHHHHHHHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNE----EEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~l----eeK~~E~~~Lssri~eLe~qL~k 183 (408)
+..+.++..|..++.+++.|.++-..+...- ++++. -..|...+..|..+|..
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~-~~~l~~~~~~L~~~L~~ 143 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESDEEKIS-PEELAQQLEELSKQLDS 143 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCC-hhhHHHHHHHHHHHHHH
Confidence 4678899999999999999888665553221 22222 23456777777777766
No 369
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=26.98 E-value=5.7e+02 Score=27.21 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcc
Q 042473 208 MQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSI 242 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l~sd~~k~g~needsSi 242 (408)
|++||+..++++..|-..|-.=+|-...|.+..-|
T Consensus 81 a~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvi 115 (363)
T COG0216 81 AEEEIKELEAKIEELEEELKILLLPKDPNDDKNII 115 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeE
Confidence 77788888888888888777766666555544443
No 370
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=26.98 E-value=3.4e+02 Score=21.99 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQL 156 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~L 156 (408)
.....|..|..++..|.....++
T Consensus 12 ~I~~~I~~i~~~v~~l~~l~~~~ 34 (117)
T smart00503 12 EIRANIQKISQNVAELQKLHEEL 34 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444433
No 371
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=26.87 E-value=2.1e+02 Score=29.19 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=19.8
Q ss_pred hhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 161 EEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFV 199 (408)
Q Consensus 161 eeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfv 199 (408)
|.|..-+.+|---|.||+..-.+-+.||.++--+.+.++
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~ 124 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLL 124 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555544
No 372
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.84 E-value=25 Score=39.69 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=32.0
Q ss_pred cchhhhhhhhccc-CCCCC-CCCCcccCcccccCCCCC
Q 042473 5 KFYKTRICVLYQK-GRCSR-PTCSFAHGDAELRRPFRS 40 (408)
Q Consensus 5 ~~yKTkLC~~f~~-G~C~~-~~C~FAHGe~ELR~~~~~ 40 (408)
..|+|-+|+..+. |.|++ ..|.|+|...|+..|..+
T Consensus 199 ~~vl~l~l~~Le~g~~~~Rk~lvmfvvq~le~~~pq~s 236 (861)
T KOG3161|consen 199 SKVLTLMLRDLEQGGGCPRKTLVMFVVQQLELEKPQLS 236 (861)
T ss_pred HHHHHHHHHHHHhcCCccccceEEEEeeeccccchhhh
Confidence 4689999999997 78999 999999999999888665
No 373
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.83 E-value=2.9e+02 Score=22.36 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
.|..||.+||.+|+=-.+-+..+- .-+.+-|.++-+-++.|..|++.|..-
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln----------~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELN----------VTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477899999999876444333322 234455666667777788888888663
No 374
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.25 E-value=4e+02 Score=26.53 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHh-----HHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLET-----NEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQ 207 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~-----~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~r 207 (408)
.-+++||.+++..++..+..-.+... .++ .++..+..-+.+|+.||...+-+...|-+ .|-.-|=.+..
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~---~~~~~~~~~i~~L~~~l~~~~~~l~~l~~---~~~~~~P~v~~ 246 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDPK---AQSSAQLSLISTLEGELIRVQAQLAQLRS---ITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCCchHH
Confidence 45666666666666555443222211 011 12334555566666666664443332322 12233677888
Q ss_pred hhHHHHHHHHHHHHhhhhhhh
Q 042473 208 MQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l~s 228 (408)
++.++.--++.++.+...+..
T Consensus 247 l~~~i~~l~~~i~~e~~~i~~ 267 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQLSG 267 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 888888888888877666554
No 375
>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta (in mitochondrial ATPase) or epsilon (in bacteria or chloroplast ATPase). The interaction site of subunit C of the F0 complex with the delta or epsilon subunit of the F1 complex may be important for connecting the rotor of F1 (gamma subunit) to the rotor of F0 (C subunit) []. In bacterial species, the delta subunit is the equivalent of the Oligomycin sensitive subunit (OSCP, IPR000711 from INTERPRO) in metazoans. The C-terminal domain of the epsilon subunit appears to act as an inhibitor of ATPase activity []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OAA_P 1BSN_A 1FS0_E 1AQT_A 1BSH_A 2RQ7_A 2RQ6_A 2E5Y_A 2QE7_H 2E5T_A ....
Probab=26.01 E-value=62 Score=24.10 Aligned_cols=20 Identities=40% Similarity=0.439 Sum_probs=17.1
Q ss_pred hhhhhhhHHHHHHHHHHHHh
Q 042473 203 NRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 203 ~r~~raQdeLKrsqaRl~kl 222 (408)
.-|.+||-.|+|+-+||+=.
T Consensus 26 ~e~~~A~~~L~rA~aRl~~~ 45 (48)
T PF00401_consen 26 KEYARAQAALKRAIARLQAA 45 (48)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999743
No 376
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=25.96 E-value=3.2e+02 Score=29.99 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEK 185 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEk 185 (408)
+-+||+.|+.+++.|..-=.++..-|.....++..|-.++..|-.|...-+
T Consensus 43 v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~ 93 (618)
T PF06419_consen 43 VNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELE 93 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888888888888888888887888888888888777766533
No 377
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=25.94 E-value=3.6e+02 Score=26.57 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=53.2
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhh--------hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKG--------QEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~--------~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
-+.++=+++.+.|+.-..=|..|+.-..+|++..++.- ...+.=+.+.+.||.++.+ |+-||+|+
T Consensus 126 FT~~ELeSlkeEL~HfE~rl~K~~H~~~el~~~~~k~~~ve~~g~~~~~~~~~e~~~~leek~Kk-------~~~KV~Kl 198 (214)
T PF06401_consen 126 FTEDELESLKEELKHFEKRLEKHRHYQEELELSHEKLKHVESLGDEEHFDRKSEKYKTLEEKIKK-------LGRKVKKL 198 (214)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHhhhhHHHHHHHHHHHHH-------HHHHHHHH
Confidence 45567789999999999999999999999999988753 2334456788899888876 89898887
Q ss_pred HH
Q 042473 199 VK 200 (408)
Q Consensus 199 vK 200 (408)
.+
T Consensus 199 ~~ 200 (214)
T PF06401_consen 199 HQ 200 (214)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 378
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=25.93 E-value=1.8e+02 Score=30.38 Aligned_cols=47 Identities=30% Similarity=0.297 Sum_probs=28.0
Q ss_pred CCCCCCCCcccccccccC---CCCCCCCCCCCCCCC--------cccCCCCCCCCCCCc
Q 042473 43 GGPDYRVGDLRDKLDRRL---SPQKIYSPGRDTRGR--------NRFRGLSPSRSPENK 90 (408)
Q Consensus 43 grrD~r~~D~R~~~~rR~---sp~rr~sp~rd~r~~--------~~~r~sS~SRs~~~k 90 (408)
|+++-+... |.+-.++. -|.|+.+|.+.+|.- ++.+|+-.+|++.+-
T Consensus 211 grr~~rs~s-Rsrsp~r~d~~~p~Rrss~~r~TR~~~~~s~~pRrr~g~sr~sr~~~R~ 268 (354)
T KOG2146|consen 211 GRRGGRSYS-RSRSPPREDRYRPTRRSSPRRRTRRDEGFSEPPRRRDGGSRESRGGGRE 268 (354)
T ss_pred cccCccccc-cccCCccccccCCcccCCcccccccccccCCCcccccCCCCCCCCCccc
Confidence 344444332 55555555 666777777777662 344577777777665
No 379
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=25.92 E-value=2e+02 Score=24.36 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=26.7
Q ss_pred HHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 148 VLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 148 ~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
.|.++--+|..-|..|-+|+++|.+=|..|...|.+
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiK 37 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIK 37 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566678888888889999999888888888777
No 380
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=25.88 E-value=59 Score=29.08 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=44.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHH
Q 042473 128 PSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELE 178 (408)
Q Consensus 128 ~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe 178 (408)
++-+...|.+-.++++.=|..|.+++-+||..+..+-.|+..|.-+|+||-
T Consensus 41 ~g~~~~eL~~~~k~lh~ri~~leeEryd~E~kv~k~~~Ei~elk~kv~d~r 91 (132)
T PF00992_consen 41 DGLSRAELQELCKELHERIDKLEEERYDLEEKVAKQDYEIEELKKKVNDLR 91 (132)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHhHHHHHc
Confidence 345677888888899999999999999999999999999999999996653
No 381
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=25.80 E-value=7.6e+02 Score=25.58 Aligned_cols=30 Identities=7% Similarity=0.264 Sum_probs=19.2
Q ss_pred HHHHhhhhh-hhhHHHHHHHHHHHHhhhhhh
Q 042473 198 FVKAHNRHS-QMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 198 fvKah~r~~-raQdeLKrsqaRl~kl~d~l~ 227 (408)
+...+..+. .++++|..++++|..+-..|.
T Consensus 278 ~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 278 LAQLKEQQLAKVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 677778888887777766664
No 382
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.79 E-value=3.5e+02 Score=28.71 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=23.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
+|-.-+..||.|+..-+..|.=+++|+.-
T Consensus 250 kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 250 KLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34445678999999999999999988765
No 383
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=25.68 E-value=2.5e+02 Score=29.90 Aligned_cols=60 Identities=25% Similarity=0.350 Sum_probs=47.3
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
.+++-++.+++.-++.-+-.+.-|..-|+-|+.+|..|.| ++|++++++=+-|+--+|.|
T Consensus 326 ~~~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e--------------------~~qe~me~ifamLqavgdtl 385 (400)
T COG5613 326 TALNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELE--------------------KAQEEMENIFAMLQAVGDTL 385 (400)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999998888888888888888888777554 46777777777777777665
No 384
>PF11733 NP1-WLL: Non-capsid protein NP1; InterPro: IPR021075 This entry represents the bocavirus non-capsid protein NP1 [].
Probab=25.66 E-value=27 Score=30.26 Aligned_cols=33 Identities=36% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCCCCchh
Q 042473 60 LSPQKIYSPGRDTRGRNRFRGLSPSRSPENKSD 92 (408)
Q Consensus 60 ~sp~rr~sp~rd~r~~~~~r~sS~SRs~~~kse 92 (408)
.+..|..||.|+-|.|+=-+--|.||||++.+.
T Consensus 11 rs~kR~~sp~r~ER~r~Wq~hrsrSRSPIR~~G 43 (94)
T PF11733_consen 11 RSYKRKGSPLRDERKRQWQHHRSRSRSPIRHHG 43 (94)
T ss_pred hhhccCCCcchhhhhhhhhhccccccChhhhhc
Confidence 456677889999888866677888999998743
No 385
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.55 E-value=2e+02 Score=31.36 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhh
Q 042473 207 QMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 207 raQdeLKrsqaRl~kl~d~l~ 227 (408)
..++|+++-+++++.++..+.
T Consensus 108 eLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 108 KLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHhhhcCCC
Confidence 445566666666655554433
No 386
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=25.37 E-value=3.1e+02 Score=24.76 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKR 190 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr 190 (408)
|.+.+++++.||+.=+|.-..-...+-.++ ++|-.||..||+-+..-|++-..
T Consensus 13 l~~~v~~lRed~r~SEdrsa~SRa~mhrRl---DElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 13 LNAEVKELREDIRRSEDRSAASRASMHRRL---DELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhH---HHHHHHHHHHHHHHHHHHhhHHh
Confidence 344445555555544443334445555554 45677899999888886665433
No 387
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.31 E-value=7.7e+02 Score=27.17 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDI 146 (408)
Q Consensus 133 ~~leeQLk~v~~D~ 146 (408)
+-||||++++.+=-
T Consensus 260 h~LEEq~reqElra 273 (502)
T KOG0982|consen 260 HMLEEQRREQELRA 273 (502)
T ss_pred HHHHHHHHhhhhhH
Confidence 45689998876543
No 388
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=25.30 E-value=1e+03 Score=27.80 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=7.3
Q ss_pred CCCcccCccccCC
Q 042473 103 GPREFSASLKISD 115 (408)
Q Consensus 103 g~~d~s~sl~~sd 115 (408)
++.+|+.-|..++
T Consensus 154 ~QG~f~~fl~a~~ 166 (1047)
T PRK10246 154 SQGQFAAFLNAKP 166 (1047)
T ss_pred ccccHHHHHhCCh
Confidence 4566665555553
No 389
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=25.03 E-value=8e+02 Score=25.57 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=34.8
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQA 217 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqa 217 (408)
+...|.+.++-|-++|.+||+.+.|+-.-|-.| |.|+--|=-|..+||+
T Consensus 64 QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~---rsRLaaAi~d~dqsq~ 112 (305)
T PF14915_consen 64 QLNVLKAENTMLNSKLEKEKQNKERLETEIESY---RSRLAAAIQDHDQSQT 112 (305)
T ss_pred hHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHh
Confidence 556778888999999999999999988877765 3444444444444443
No 390
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=25.01 E-value=5.1e+02 Score=23.28 Aligned_cols=64 Identities=25% Similarity=0.257 Sum_probs=43.2
Q ss_pred HhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 042473 157 ETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 157 E~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl 222 (408)
|+-|-+|-+| +|+-|..=|..==++..+.-+.=++++.-+..|+.|=..+=-||.+++..|+.-
T Consensus 8 Ei~Ls~kheE--IlsqR~~LLq~mE~~~~~q~~~kk~~~~a~~~A~kRN~~LLqDie~~eksLq~r 71 (109)
T PF15134_consen 8 EIQLSKKHEE--ILSQREMLLQQMENKFGDQNTEKKSQQQASEAAKKRNKQLLQDIEAAEKSLQTR 71 (109)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555555333 455555444333333333344456888899999999999999999999999764
No 391
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.85 E-value=2.3e+02 Score=26.18 Aligned_cols=44 Identities=30% Similarity=0.341 Sum_probs=34.4
Q ss_pred HHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHH
Q 042473 144 LDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEE 187 (408)
Q Consensus 144 ~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkee 187 (408)
.=|+.|.+.+..|+-.+++=-++..+|+.++..|+.+++.....
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888888877788888999999999888875543
No 392
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=24.73 E-value=1.8e+02 Score=32.65 Aligned_cols=63 Identities=24% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHH-HH--------H--------HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 042473 146 INVLEDRKLQLETNEEEKGQEADILSSRIKEL-ET--------Q--------LQKEKEESKRIASKIKKFVKAHNRHSQM 208 (408)
Q Consensus 146 ~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eL-e~--------q--------L~kEkeeCkr~tSkiKKfvKah~r~~ra 208 (408)
++-+.+.|..|--. -+-+++++.+-+++-+| |+ | +-.-.|+|-.|-..||++++..+.+|-+
T Consensus 42 ~~Wi~k~k~~l~~L-~~~l~~ID~ai~~~l~lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~~vK~~L~~vK~qvei 120 (683)
T PF08580_consen 42 LDWIQKAKDVLYGL-REGLEEIDSAISRFLDLIEVYVSAIEDLQLREDIANSLFDLIEEVSQMELDVKKTLISVKKQVEI 120 (683)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 34456666655555443 22 2 5556788888888888888887776655
Q ss_pred h
Q 042473 209 Q 209 (408)
Q Consensus 209 Q 209 (408)
-
T Consensus 121 A 121 (683)
T PF08580_consen 121 A 121 (683)
T ss_pred H
Confidence 3
No 393
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=24.57 E-value=1.7e+02 Score=33.25 Aligned_cols=49 Identities=35% Similarity=0.489 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEE 187 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkee 187 (408)
||+|-.|.-++--+.++|+++ ||..-+-| -+|..+|.+||+.|.+.|.+
T Consensus 324 KNDLIakVDeL~~E~~vLrgE---lea~kqak----~Klee~i~elEEElk~~k~e 372 (832)
T KOG2077|consen 324 KNDLIAKVDELTCEKDVLRGE---LEAVKQAK----LKLEEKIRELEEELKKAKAE 372 (832)
T ss_pred HHHHHHHHHhhccHHHHHhhH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHH
No 394
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=24.57 E-value=5.9e+02 Score=23.87 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.3
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
=+..+...|+++|..+...+.+-..|+..||+=|.-|
T Consensus 144 K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF 180 (216)
T cd07627 144 KLNSLLSELEEAERRASELKKEFEEVSELIKSELERF 180 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888888888888888888888765555
No 395
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=24.40 E-value=1.6e+02 Score=27.14 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=7.4
Q ss_pred hhHHHHhhHHHHHHHHH
Q 042473 166 EADILSSRIKELETQLQ 182 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~ 182 (408)
+...+..||++|+.+|.
T Consensus 65 ~~~~~e~rI~~L~~~L~ 81 (160)
T PRK06342 65 QMARPLRDLRYLAARRR 81 (160)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33344444444444443
No 396
>PRK00295 hypothetical protein; Provisional
Probab=24.26 E-value=3.6e+02 Score=21.64 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 170 LSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 170 Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
|..||.+||.+|+=-.+-+..+- .-+.+-|.++-+-+..|..|++.|..-
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln----------~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALN----------DVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66789999999876444433332 234455666777777788888888764
No 397
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=24.24 E-value=5.8e+02 Score=26.35 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHhh--------------hhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDR--------------KLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFV 199 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~--------------Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfv 199 (408)
.+..|+..++..+...... ..+|...+.+--.+...|..+++.|..++..-+++-.++...-..|.
T Consensus 279 ~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~ 358 (498)
T TIGR03007 279 ATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELT 358 (498)
T ss_pred HHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 5677777777776554322 12344444444444445555555555555444444444444444444
Q ss_pred HHhhhhhhhhH
Q 042473 200 KAHNRHSQMQD 210 (408)
Q Consensus 200 Kah~r~~raQd 210 (408)
..-..+--+++
T Consensus 359 ~L~Re~~~~~~ 369 (498)
T TIGR03007 359 QLNRDYEVNKS 369 (498)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 398
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=24.22 E-value=7e+02 Score=28.09 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=46.3
Q ss_pred hhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhhh-h----hHHHHHHHHHHH
Q 042473 152 RKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKK------FVKAHNRHSQ-M----QDDLKRSQARLQ 220 (408)
Q Consensus 152 ~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK------fvKah~r~~r-a----QdeLKrsqaRl~ 220 (408)
++.+|+..+++=-.|+..|-+.|.-+|.++..+.-++++|..+|.. +++||..-.+ + +|..+|-|.+++
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666777777888888888888888888777754 5777743332 2 344455555555
Q ss_pred Hhh
Q 042473 221 KLG 223 (408)
Q Consensus 221 kl~ 223 (408)
.+=
T Consensus 160 ~~q 162 (632)
T PF14817_consen 160 QLQ 162 (632)
T ss_pred HHH
Confidence 443
No 399
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=24.17 E-value=5.1e+02 Score=29.63 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=37.2
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhhhhhHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIA-----------SKIKKFVKAHNRHSQMQDDLKRS 215 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~t-----------SkiKKfvKah~r~~raQdeLKrs 215 (408)
+.|+..|+.|+..+..=..-++.+.-+|..||.|+..-...-.++. .-=|+-+.+=..+-.+|..+-.+
T Consensus 499 k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~ 578 (698)
T KOG0978|consen 499 KLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKS 578 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444445555566666666555211111111 11122333334455566666666
Q ss_pred HHHHHHhhhhh
Q 042473 216 QARLQKLGYHL 226 (408)
Q Consensus 216 qaRl~kl~d~l 226 (408)
++.|+.+-.++
T Consensus 579 ~~~le~i~~~~ 589 (698)
T KOG0978|consen 579 EAKLEQIQEQY 589 (698)
T ss_pred HHHHHHHHHHH
Confidence 66666554443
No 400
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.09 E-value=7.4e+02 Score=24.86 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKE 176 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~e 176 (408)
.|.+++...+++.+...-+.++.-++....+.+.|.|.+++
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~e 82 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEE 82 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666555555655554444
No 401
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=24.07 E-value=2.1e+02 Score=25.29 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=31.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKKFVKAHN 203 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~ 203 (408)
.+...|..|-.||..+.++-..++.+.-+|||+..
T Consensus 56 ~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 56 QVEKEIRELQNQLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677888999999999999999999999999875
No 402
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=24.02 E-value=2.1e+02 Score=31.49 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=10.1
Q ss_pred hhhhhHHHHHHHHHHH
Q 042473 205 HSQMQDDLKRSQARLQ 220 (408)
Q Consensus 205 ~~raQdeLKrsqaRl~ 220 (408)
+-..+.+|++|+-+|+
T Consensus 311 lE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 311 LEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566777777765
No 403
>PRK00846 hypothetical protein; Provisional
Probab=23.99 E-value=4.4e+02 Score=22.15 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=31.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
.|..||.+||.+|+=-.+-...+- .-+.+.|..+.+-+..|..|++.|-.-
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN----------~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELS----------EALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888876444333322 223445566666667777777776554
No 404
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=23.80 E-value=1e+02 Score=25.51 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=19.4
Q ss_pred hhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 153 KLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 153 Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
|.+|+.+|+.| ..|...+..||.|+..
T Consensus 1 k~~L~~l~~~k----~~Le~~L~~lE~qIy~ 27 (80)
T PF09340_consen 1 KKELKELLQKK----KKLEKDLAALEKQIYD 27 (80)
T ss_pred CHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 45677777777 6777777888887765
No 405
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.80 E-value=1.1e+03 Score=26.82 Aligned_cols=66 Identities=27% Similarity=0.365 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhh---hHhHHh---hhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQ---LETNEE---EKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~---LE~~le---eK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
..++..+.+++..++.|.+.... ++..+. ..+.+...+-..+..++.++.+-.+.++-+.+.+..|
T Consensus 277 ~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 277 RELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555444332 222222 2334444444444444444444444444444444444
No 406
>KOG3270 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.73 E-value=1.2e+02 Score=30.46 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhh--hhhhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhhH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEK--GQEADILS-SRIKELETQLQKEKEESKRIASKIKKFVK-AHNRHSQMQD 210 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK--~~E~~~Ls-sri~eLe~qL~kEkeeCkr~tSkiKKfvK-ah~r~~raQd 210 (408)
.-++||.|-.|-..+...-..|..+|.-+ ++|.+++. +|+.|.+.|+-. +-..++++=+ +|.| ..||
T Consensus 48 ~~~~lk~i~~d~~~~~~~~~~~~~~L~~~~sv~El~~l~a~r~~d~~~Q~i~-------lldQv~~l~~l~~~~--~~~e 118 (244)
T KOG3270|consen 48 ISALLKSIIVDDQQSPGEADGLLALLKDKKSVDELNELLAERDKDAEEQFIE-------LLDQVQKLNGLEVAR--KIQE 118 (244)
T ss_pred hhhhhhccccccccCccchhhHHHHhhhhhhhHHHHHhhhhhchhhhHHHHH-------HHHHHHHhhccchhH--HHHH
Confidence 34577777777776666666677766655 88887765 489999999877 5666666655 4455 7888
Q ss_pred HHHHHHHHHHHhhhhhh
Q 042473 211 DLKRSQARLQKLGYHLG 227 (408)
Q Consensus 211 eLKrsqaRl~kl~d~l~ 227 (408)
+|-.+--.|.|..-.++
T Consensus 119 ~L~~~~e~l~r~nl~~~ 135 (244)
T KOG3270|consen 119 KLVKSVEKLARENLEKE 135 (244)
T ss_pred HHHHHHHHhcccchhhc
Confidence 88888777777665544
No 407
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.72 E-value=1e+03 Score=26.52 Aligned_cols=62 Identities=24% Similarity=0.346 Sum_probs=37.9
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------hhhhhhhHHHHHH-----------HH
Q 042473 164 GQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH---------------NRHSQMQDDLKRS-----------QA 217 (408)
Q Consensus 164 ~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah---------------~r~~raQdeLKrs-----------qa 217 (408)
|++-++-.|.--+++.-|++-.|+-.||----.++.||- .-|+-.|+|+.+= .+
T Consensus 438 iQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs 517 (527)
T PF15066_consen 438 IQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKS 517 (527)
T ss_pred HHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334466667777788888877777777654444444443 3456667766543 35
Q ss_pred HHHHhhhh
Q 042473 218 RLQKLGYH 225 (408)
Q Consensus 218 Rl~kl~d~ 225 (408)
||+||+-+
T Consensus 518 ~leKLvaq 525 (527)
T PF15066_consen 518 RLEKLVAQ 525 (527)
T ss_pred HHHHHHHh
Confidence 66666654
No 408
>PRK15396 murein lipoprotein; Provisional
Probab=23.71 E-value=4.4e+02 Score=22.12 Aligned_cols=51 Identities=16% Similarity=0.387 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 138 QLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 138 QLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
|+.++..|++.|. .+++.|++-++.+-..+...|+|-.|--.+|--.+.-|
T Consensus 26 kvd~LssqV~~L~--------------~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 26 KIDQLSSDVQTLN--------------AKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred hHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555554 34566777788888888888888887766665554443
No 409
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.45 E-value=3.6e+02 Score=23.21 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=20.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKIKKFV 199 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfv 199 (408)
..|.+-+..|+.++...+++|+++..++++.-
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 107 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQK 107 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777776666666666665543
No 410
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=23.40 E-value=4.1e+02 Score=28.03 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=39.3
Q ss_pred hhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 155 QLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH-NRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 155 ~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah-~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
+|.-+|+.-+.-...|..|..-|+.++..-.+.-.++..++.+....| +.|-+++.-+-+.|+-..-|..+|
T Consensus 389 ~l~~~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 389 QIATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHHHHHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444443333355555666666666665555555666666655544 556666555555555555554443
No 411
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.14 E-value=4.3e+02 Score=21.81 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 042473 211 DLKRSQARLQKL 222 (408)
Q Consensus 211 eLKrsqaRl~kl 222 (408)
+++..+..|..+
T Consensus 89 ~~~~~e~~l~~~ 100 (108)
T PF02403_consen 89 QLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 412
>PRK00736 hypothetical protein; Provisional
Probab=22.93 E-value=2.4e+02 Score=22.60 Aligned_cols=48 Identities=25% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQ 180 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~q 180 (408)
..||.+|.--+.=|+.|.+--++....++.-...+..|..|+.+++..
T Consensus 8 ~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 8 TELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 413
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=22.86 E-value=7e+02 Score=24.10 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=7.1
Q ss_pred cCCCCcchhhcccc
Q 042473 113 ISDGINDRVKERKF 126 (408)
Q Consensus 113 ~sd~~~d~~Kd~k~ 126 (408)
|.+| |.||.|-.
T Consensus 32 V~eG--~~V~~G~~ 43 (327)
T TIGR02971 32 VAEG--DRVQAGQV 43 (327)
T ss_pred ccCC--CEecCCcE
Confidence 5544 67776654
No 414
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=22.81 E-value=5.3e+02 Score=25.58 Aligned_cols=64 Identities=28% Similarity=0.408 Sum_probs=41.8
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 166 EADILSSRIKELETQLQKEKEESK----------RIASKIKKFVKAH-NRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCk----------r~tSkiKKfvKah-~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
....|..-|.+|+..+..-+.++. ....+++.|+..- ..+..+++.+.+.+..+.++..-+..|
T Consensus 275 ~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~ 349 (370)
T PF02181_consen 275 SLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGED 349 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344455555555555555555443 3466788888654 677788888888898888888888554
No 415
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.72 E-value=7.8e+02 Score=27.69 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=18.1
Q ss_pred hhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHH
Q 042473 154 LQLETNEEEKGQEADILSSRIKELETQLQKEKEE 187 (408)
Q Consensus 154 s~LE~~leeK~~E~~~Lssri~eLe~qL~kEkee 187 (408)
.-+.-.|+.|..|...+-.-+.-|.+||..-|+.
T Consensus 215 ~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk 248 (596)
T KOG4360|consen 215 RSGQEELQSKTKELSRQQEENSKLLSQLVDLQKK 248 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344445556665555555555555555554433
No 416
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.69 E-value=7.2e+02 Score=24.22 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=50.7
Q ss_pred hhhhHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHH------hhhhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 042473 164 GQEADILSSRIKELETQLQK---EKEESKRIASKIKKFVKA------HNRHSQMQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 164 ~~E~~~Lssri~eLe~qL~k---EkeeCkr~tSkiKKfvKa------h~r~~raQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
++=+.++.+-+.++...+.| -.-+|.|+-.+++|++.. ...+-+|+++|..|+.-|+.+-++|..++
T Consensus 97 l~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~EL 172 (225)
T cd07590 97 IEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEEL 172 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666665554443 457899999999999832 26788999999999999999999987764
No 417
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.67 E-value=2.5e+02 Score=24.37 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
++++-++-+..-++.|.+....|+..|.++.+++..+...+++|-.+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777888888888888888877777777777777665543
No 418
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=22.59 E-value=2.8e+02 Score=25.53 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=18.9
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 198 FVKAHNRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 198 fvKah~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
|-++...+-.|+..++.+++.|+.+..++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (265)
T TIGR00999 56 FESAEYALEEAQAEVQAAKSELRSAREAKD 85 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccC
Confidence 444555666667777777777766665554
No 419
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=22.47 E-value=5.5e+02 Score=22.77 Aligned_cols=86 Identities=24% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHH-HHHHhhhhhhHhHHhh-------hhhhhHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhh
Q 042473 135 LLEQLKEVQLDI-NVLEDRKLQLETNEEE-------KGQEADILSSRIKELETQLQKEKEES-KRIASKIKKFVKAHNRH 205 (408)
Q Consensus 135 leeQLk~v~~D~-~~L~d~Ks~LE~~lee-------K~~E~~~Lssri~eLe~qL~kEkeeC-kr~tSkiKKfvKah~r~ 205 (408)
+++-|..|+.|- .++.++=.-|+.+|.- ..++...+..--+.++..|...=++. ....+-| +.|
T Consensus 2 l~~~l~~I~~~W~~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI-------~sy 74 (142)
T PF04048_consen 2 LDEVLNEIKDEWPFMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSI-------GSY 74 (142)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 567788888886 4566677778888752 22233333333333333333322221 2233333 556
Q ss_pred hhhhHHHHHHHHHHHHhhhhhh
Q 042473 206 SQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 206 ~raQdeLKrsqaRl~kl~d~l~ 227 (408)
..++.-+.-||.++..|=..|.
T Consensus 75 ~~i~~~i~~sq~~i~~lK~~L~ 96 (142)
T PF04048_consen 75 SQILSSISESQERIRELKESLQ 96 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665554444
No 420
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.43 E-value=1.6e+02 Score=26.56 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhh
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEE 162 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~lee 162 (408)
+--|++.+|+.+-+|++|+..|+=||..+-+
T Consensus 69 ~s~leak~k~see~IeaLqkkK~YlEk~v~e 99 (114)
T KOG3501|consen 69 RSHLEAKMKSSEEKIEALQKKKTYLEKTVSE 99 (114)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999988876544
No 421
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=22.39 E-value=1.8e+02 Score=28.19 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 173 RIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 173 ri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
+|.++|..|.+ +.-+||++||..+.|+-|=.++-.||--|-.--..|.
T Consensus 3 ~l~~~E~~le~-------~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~ 50 (207)
T cd07636 3 RLKSHEAELDK-------TNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFK 50 (207)
T ss_pred hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777766 5555555566666666665566666655544444443
No 422
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=22.35 E-value=4.7e+02 Score=29.42 Aligned_cols=54 Identities=35% Similarity=0.496 Sum_probs=36.2
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARL 219 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl 219 (408)
+.-+-.|.|||+.+|-|-+|++.++. |...-+|.|-..| .||+ ||=+.|.|-.|
T Consensus 405 eear~rkqqleae~e~kreearrkae-----eer~~keee~arr------efir--------qey~rrkqlkl 458 (708)
T KOG3654|consen 405 EEARRRKQQLEAEKEQKREEARRKAE-----EERAPKEEEVARR------EFIR--------QEYERRKQLKL 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH-----hhhcchhhhhhHH------HHHH--------HHHHHHHHHHH
Confidence 34466789999999999999887653 3344555544443 4444 77788888654
No 423
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=22.31 E-value=43 Score=32.89 Aligned_cols=10 Identities=50% Similarity=0.869 Sum_probs=0.0
Q ss_pred CCCCCCCCcC
Q 042473 393 FRLPPPLPIP 402 (408)
Q Consensus 393 ~~~p~ppp~~ 402 (408)
|||||||-+|
T Consensus 168 fmpppPP~pp 177 (218)
T KOG4327|consen 168 FMPPPPPMPP 177 (218)
T ss_pred cCCCCCCCCc
No 424
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=22.30 E-value=5.9e+02 Score=23.02 Aligned_cols=16 Identities=38% Similarity=0.711 Sum_probs=8.0
Q ss_pred HHHHhhHHHHHHHHHH
Q 042473 168 DILSSRIKELETQLQK 183 (408)
Q Consensus 168 ~~Lssri~eLe~qL~k 183 (408)
..|.+||.+.|..+.+
T Consensus 52 ~~L~~riKevd~~~~~ 67 (131)
T PF10158_consen 52 NALAKRIKEVDQEIAK 67 (131)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554444
No 425
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.21 E-value=5.2e+02 Score=24.61 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=22.7
Q ss_pred HHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042473 146 INVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIAS 193 (408)
Q Consensus 146 ~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tS 193 (408)
...|..+...|+..+.+-.++...|...+..|+.++.--+|+-+-|..
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333334444555555555555555555554443
No 426
>PF07007 DUF1311: Protein of unknown function (DUF1311); InterPro: IPR009739 This family consists of several bacterial proteins of around 120 residues in length. Members of this family contain four highly conserved cysteine residues. The function of this family is unknown.; PDB: 3GI7_A.
Probab=22.16 E-value=3.4e+02 Score=20.68 Aligned_cols=24 Identities=25% Similarity=0.018 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhc
Q 042473 208 MQDDLKRSQARLQKLGYHLGLDAT 231 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l~sd~~ 231 (408)
++..|+.+|..+.+.-+.-.....
T Consensus 44 ~~~~l~~~Q~~W~~~r~~~C~~~~ 67 (95)
T PF07007_consen 44 ARKALKESQRAWLKYRDAECAFAA 67 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 568999999999999886555433
No 427
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.11 E-value=1.4e+02 Score=30.04 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
..|+.||-+++.+|+.|+. ...|+.-.+..+.+-...--|++.|+...
T Consensus 59 ~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~ 106 (262)
T COG1729 59 TQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGR 106 (262)
T ss_pred HHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 5788899999999988887 77777666555544444444444444443
No 428
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=21.99 E-value=6.1e+02 Score=27.15 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 183 KEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 183 kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
.++++...+...+..++--+ --++++.....|+.+.+.+..
T Consensus 551 ~e~~~l~~~l~~~~~wL~~~-----d~~~i~~~~~~l~~~~~~~~~ 591 (595)
T TIGR02350 551 EEKEKIEKAVAELKEALKGE-----DVEEIKAKTEELQQALQKLAE 591 (595)
T ss_pred HHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666432 224556666666666655543
No 429
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.99 E-value=7.8e+02 Score=24.37 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhhh
Q 042473 141 EVQLDINVLEDRKLQ 155 (408)
Q Consensus 141 ~v~~D~~~L~d~Ks~ 155 (408)
++|.|++.+++.+..
T Consensus 160 ~~Q~~le~k~e~l~k 174 (243)
T cd07666 160 QIQAELDSKVEALAN 174 (243)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444555555544444
No 430
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=21.90 E-value=7e+02 Score=23.77 Aligned_cols=59 Identities=31% Similarity=0.317 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHH-------hhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLE-------DRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRI 191 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~-------d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~ 191 (408)
+.||.||+++..-.+-.. -.-..+|.-|+.--.=+..+.++|.+||.+|...-+.|+.+
T Consensus 95 ~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 95 EELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh
Confidence 456667766655443222 11123444444444445666777777777777655555543
No 431
>PLN02320 seryl-tRNA synthetase
Probab=21.46 E-value=1.1e+03 Score=25.89 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=54.3
Q ss_pred HHHHHHHhhhhhhHhHHhhh-----hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhhhhhhHHH
Q 042473 144 LDINVLEDRKLQLETNEEEK-----GQEADILSSRIKELETQLQKEKEESKRIASKIKKF------VKAHNRHSQMQDDL 212 (408)
Q Consensus 144 ~D~~~L~d~Ks~LE~~leeK-----~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf------vKah~r~~raQdeL 212 (408)
+|++.++++...+...|..+ ++++-.|-.+...|..++..-+.+=..++.+|+.- -++-...-.+-++|
T Consensus 67 lD~k~ir~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i 146 (502)
T PLN02320 67 IDFKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGL 146 (502)
T ss_pred cCHHHHHhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHH
Confidence 66666666666655555544 34555555555566666666666666666666540 01111223344566
Q ss_pred HHHHHHHHHhhhhhhhhhccCCCCCCCCcc
Q 042473 213 KRSQARLQKLGYHLGLDATKVGGNEEDSSI 242 (408)
Q Consensus 213 KrsqaRl~kl~d~l~sd~~k~g~needsSi 242 (408)
+--++.+..+-++|..-++.. -|--+.+|
T Consensus 147 ~~le~~~~~~~~~l~~~~l~i-PN~~h~~V 175 (502)
T PLN02320 147 VTLEEDLVKLTDELQLEAQSI-PNMTHPDV 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCCCccC
Confidence 666666666666666655554 45444443
No 432
>PRK02793 phi X174 lysis protein; Provisional
Probab=21.39 E-value=2.9e+02 Score=22.38 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=24.8
Q ss_pred hhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 151 DRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 151 d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
++-.+||+-|-=--+=+..|+.=|.....++..-+..|+.|..+++.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444333333334455555666666666655666667666654
No 433
>PF11002 RDM: RFPL defining motif (RDM); InterPro: IPR022723 The RFPL defining motif (RDM) is a domain found on RFPL (Ret finger protein like) proteins. In humans, RFPL transcripts can be detected at the onset of neurogenesis in differentiating human embryonic stem cells, and in the developing human neocortex []. The RDM domain is thought to have emerged from a neofunctionalisation event. It is found N-terminal to the SPRY domain (PF00622 from PFAM). ; PDB: 2FBE_B.
Probab=21.37 E-value=24 Score=26.83 Aligned_cols=28 Identities=39% Similarity=0.577 Sum_probs=0.5
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
..+|.|+|.|||-||..- -.|--+|+||
T Consensus 14 Lg~Lvs~iKelEPqL~~i----L~MnPrmrkF 41 (42)
T PF11002_consen 14 LGKLVSKIKELEPQLRAI----LQMNPRMRKF 41 (42)
T ss_dssp -------------------------------C
T ss_pred HHHHHHHHHHhCHHHHHH----HccCcccccc
Confidence 468999999999999873 2355556655
No 434
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.35 E-value=8.1e+02 Score=25.02 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=16.3
Q ss_pred HHHHHHhhhhhhhhHHHH
Q 042473 196 KKFVKAHNRHSQMQDDLK 213 (408)
Q Consensus 196 KKfvKah~r~~raQdeLK 213 (408)
|||+++-..|-++|...+
T Consensus 130 kkf~~~M~~f~~~~~~~r 147 (297)
T KOG0810|consen 130 KKLKELMNEFNRTQSKYR 147 (297)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 899999999999998875
No 435
>PRK00106 hypothetical protein; Provisional
Probab=21.32 E-value=1.1e+03 Score=25.96 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=39.7
Q ss_pred hHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH---HHHhhhhhh
Q 042473 158 TNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQAR---LQKLGYHLG 227 (408)
Q Consensus 158 ~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaR---l~kl~d~l~ 227 (408)
-.|+.+..++.+-...+...+..|...++++......+..++.-....+.-.--|-+.||+ |+++-+++.
T Consensus 111 E~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~~ 183 (535)
T PRK00106 111 TSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKLT 183 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555556666666677666666666666555555444445555665 555544443
No 436
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=21.20 E-value=3.6e+02 Score=23.15 Aligned_cols=46 Identities=15% Similarity=0.367 Sum_probs=27.0
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQK 221 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~k 221 (408)
+++.|++.|+.|..|+.. +.+.+.. +..-...||+|-.||-.||.-
T Consensus 25 kvdqLss~V~~L~~kvdq-------l~~dv~~---a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIAR-------LEQDMKA---LRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHhhhh
Confidence 566666666666666666 3333322 223345677777777777754
No 437
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=21.19 E-value=7.3e+02 Score=27.58 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhc--cCCCCCC
Q 042473 182 QKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDAT--KVGGNEE 238 (408)
Q Consensus 182 ~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~~--k~g~nee 238 (408)
..++++.+.+..+.++++.-.. ..-++++.....|+.+.+.|...+. ..|+|--
T Consensus 578 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 633 (657)
T PTZ00186 578 DAEKENVKTLVAELRKAMENPN---VAKDDLAAATDKLQKAVMECGRTEYQQAAAANSG 633 (657)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---cCHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 3455566666666666664210 0125566666666666555554332 2445443
No 438
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=21.13 E-value=1e+03 Score=27.01 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINV 148 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~ 148 (408)
.-.+..+|..|+.+++.
T Consensus 184 ~~~~~~~l~~v~~~~~~ 200 (670)
T KOG0239|consen 184 LGDLVTELEHVTNSISE 200 (670)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555544433
No 439
>PRK14127 cell division protein GpsB; Provisional
Probab=21.09 E-value=1.2e+02 Score=26.81 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=33.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHH
Q 042473 128 PSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQ 182 (408)
Q Consensus 128 ~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~ 182 (408)
-+=+.+.-.+=|.+|-.|+++|..+...|+.. ...|..++.+++.|+.
T Consensus 21 RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e-------~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKDYEAFQKEIEELQQE-------NARLKAQVDELTKQVS 68 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhc
Confidence 35556777788999999999998887777543 3455556666666555
No 440
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=21.07 E-value=3.6e+02 Score=26.35 Aligned_cols=54 Identities=28% Similarity=0.319 Sum_probs=38.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
++---|.-|||+.+.++..=..+-..|..-|-+--.++....+.+.+|...+..
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~ 63 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT 63 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344567889999999998766666667776666666666677777777665543
No 441
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=21.01 E-value=7.5e+02 Score=30.39 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=32.1
Q ss_pred hhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 042473 155 QLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRS 215 (408)
Q Consensus 155 ~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrs 215 (408)
.++..+.+..--.+....++.+||.++..-...-.-|-+.++.|-|.-..+...+.+.+-.
T Consensus 220 ~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l 280 (1294)
T KOG0962|consen 220 VLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNL 280 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444556666777777766644433345555555555555555555554443
No 442
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=20.97 E-value=6.3e+02 Score=24.96 Aligned_cols=47 Identities=30% Similarity=0.404 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELET 179 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~ 179 (408)
..|+++|+.|..+++-|.----+++--++.--.++..|++|+.+.|.
T Consensus 112 ~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 112 EELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 46788888888888888776666766666666666677777666554
No 443
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.95 E-value=1.1e+03 Score=25.66 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhh
Q 042473 208 MQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l~s 228 (408)
++-.|++.+.||+.|..+|.+
T Consensus 366 ~~~~l~~~~~~l~~l~~~L~~ 386 (440)
T COG1570 366 LRRQLKRKRERLEALVEQLES 386 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 345567778888888888765
No 444
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=20.82 E-value=5.3e+02 Score=23.52 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=25.9
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQD 210 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQd 210 (408)
+.+.|-..+++...+|..-.+.-.-+++++..|..+=.+++.-|.
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~ 59 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQT 59 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555588888887776655555443
No 445
>KOG2989 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=6.1e+02 Score=25.75 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhh--hhhHhHHhhhhhhhHHHHhhHH
Q 042473 140 KEVQLDINVLEDRK--LQLETNEEEKGQEADILSSRIK 175 (408)
Q Consensus 140 k~v~~D~~~L~d~K--s~LE~~leeK~~E~~~Lssri~ 175 (408)
-++...|+.|..+- ++.|++...-.+|+..|.+|-+
T Consensus 125 ~d~~d~m~~lekrt~~S~~e~~~~~~ldel~~~k~r~~ 162 (253)
T KOG2989|consen 125 EDMKDEIKRLEKRTFQSKDEEIIRRALDELKVLKERPA 162 (253)
T ss_pred hhhhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhcccC
Confidence 44557777777653 5677788888889998888754
No 446
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=20.42 E-value=5.8e+02 Score=22.25 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH------hhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 042473 137 EQLKEVQLDINVLE------DRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQD 210 (408)
Q Consensus 137 eQLk~v~~D~~~L~------d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQd 210 (408)
++|+++-.|-+.|. ++-..+...++.=+.+...|+.++-.++.+|..-+.++......++.+...|....+-|+
T Consensus 7 ~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 7 EELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 042473 211 DL 212 (408)
Q Consensus 211 eL 212 (408)
++
T Consensus 87 ~l 88 (150)
T PF07200_consen 87 EL 88 (150)
T ss_dssp HH
T ss_pred HH
No 447
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=20.32 E-value=1.2e+02 Score=23.91 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=12.8
Q ss_pred hHHHHhhHHHHHHHHHH
Q 042473 167 ADILSSRIKELETQLQK 183 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~k 183 (408)
++.+++||.+||..+..
T Consensus 30 iDeM~~RIDdLE~si~d 46 (54)
T PF06825_consen 30 IDEMSSRIDDLEKSIAD 46 (54)
T ss_dssp HHHHHHHHHCCHHHH--
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 56678999999988865
No 448
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.21 E-value=3.1e+02 Score=23.95 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
.++=.+|.++...|..|.++-..|...|.+=+.|=..|.=.+.-|=..|..
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444444444444445555555555555544
No 449
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=20.14 E-value=1e+03 Score=25.13 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
+.-|=.++.--|+.-+++---|+-+--.|+-|+.+|+.-|.|||+-+
T Consensus 5 ~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEai 51 (351)
T PF07058_consen 5 VQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAI 51 (351)
T ss_pred hhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555667777777777888889999999999999999754
No 450
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.10 E-value=4.9e+02 Score=22.74 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhh---hhHHHHhhHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQ---EADILSSRIKELET 179 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~---E~~~Lssri~eLe~ 179 (408)
..+|+||.++-.+|..|.++ +..+|+|... |-..|-.++.+++.
T Consensus 11 ~~le~~l~~l~~~~~~LK~~---~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQ---LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777666666443 3333444332 44556666666655
No 451
>PRK04406 hypothetical protein; Provisional
Probab=20.07 E-value=3.1e+02 Score=22.53 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=28.3
Q ss_pred HHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 148 VLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 148 ~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
.|.++-..||+-|-=-=+=+..|+.-|.....+|..-+..|+.|+.+++-
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555444333444556666666666666666666666665543
Done!