Query 042473
Match_columns 408
No_of_seqs 121 out of 176
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 10:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9m_A Zinc finger CCCH-type d 99.0 6.6E-11 2.3E-15 93.9 0.7 37 3-39 14-51 (69)
2 1m9o_A Tristetraproline; Cys3H 98.7 8.7E-09 3E-13 79.1 2.7 38 1-38 4-43 (77)
3 1m9o_A Tristetraproline; Cys3H 97.7 4.1E-06 1.4E-10 64.2 0.0 30 4-33 45-76 (77)
4 2d9n_A Cleavage and polyadenyl 97.4 7.1E-05 2.4E-09 58.6 2.3 35 3-37 4-39 (77)
5 2cqe_A KIAA1064 protein; CCCH 97.1 0.00013 4.4E-09 60.0 1.4 25 6-30 10-35 (98)
6 2rhk_C Cleavage and polyadenyl 96.9 0.00029 1E-08 54.9 1.6 35 3-37 10-45 (72)
7 3d2q_A Muscleblind-like protei 96.9 0.00026 8.9E-09 54.6 1.1 29 8-36 5-35 (70)
8 3d2q_A Muscleblind-like protei 95.8 0.0024 8.3E-08 49.1 1.2 28 9-36 42-69 (70)
9 2e5s_A Otthump00000018578; ZF- 95.6 0.0026 9E-08 52.4 0.7 31 7-37 18-50 (98)
10 3d2n_A Muscleblind-like protei 94.9 0.0088 3E-07 48.1 1.6 32 3-34 3-36 (83)
11 2e5s_A Otthump00000018578; ZF- 94.8 0.0053 1.8E-07 50.6 0.2 28 9-36 56-83 (98)
12 2d9n_A Cleavage and polyadenyl 93.6 0.036 1.2E-06 43.2 2.6 34 8-41 37-71 (77)
13 2rhk_C Cleavage and polyadenyl 93.6 0.018 6.2E-07 44.8 0.8 28 7-34 42-70 (72)
14 2cqe_A KIAA1064 protein; CCCH 93.5 0.021 7.2E-07 46.8 1.2 24 9-32 36-61 (98)
15 2rpp_A Muscleblind-like protei 93.5 0.023 7.8E-07 46.4 1.3 30 5-34 13-44 (89)
16 2fc6_A Nuclear, target of EGR1 90.9 0.046 1.6E-06 41.3 0.1 27 6-32 17-45 (50)
17 1c1g_A Tropomyosin; contractIl 90.1 7.6 0.00026 32.6 13.4 25 135-159 18-42 (284)
18 3d2n_A Muscleblind-like protei 89.1 0.11 3.9E-06 41.6 1.1 28 8-35 42-69 (83)
19 3nmd_A CGMP dependent protein 89.1 0.78 2.7E-05 36.8 5.8 44 155-198 23-66 (72)
20 1c1g_A Tropomyosin; contractIl 87.7 11 0.00039 31.5 13.5 56 133-188 23-78 (284)
21 2efr_A General control protein 87.1 7.5 0.00026 34.7 11.6 57 133-189 3-59 (155)
22 2dfs_A Myosin-5A; myosin-V, in 87.0 1.7 5.8E-05 48.2 8.9 20 212-231 1028-1047(1080)
23 3o0z_A RHO-associated protein 85.9 15 0.00052 33.3 13.0 62 137-198 55-116 (168)
24 1ytz_T Troponin T; muscle, THI 85.0 1.3 4.4E-05 37.5 5.3 47 131-177 43-89 (107)
25 2rpp_A Muscleblind-like protei 84.1 0.28 9.7E-06 40.0 0.9 28 8-35 50-77 (89)
26 3u1l_A PRE-mRNA-splicing facto 84.1 0.27 9.4E-06 45.8 0.9 21 10-30 71-92 (240)
27 1jcd_A Major outer membrane li 83.6 3.7 0.00013 30.9 6.7 46 167-222 6-51 (52)
28 1j1d_B Troponin T, TNT; THIN f 83.1 1.4 4.8E-05 37.2 4.8 47 131-177 43-89 (106)
29 3na7_A HP0958; flagellar bioge 83.1 7.6 0.00026 35.7 10.1 27 201-227 116-142 (256)
30 3tnu_B Keratin, type II cytosk 81.8 12 0.0004 31.5 9.9 62 132-193 38-103 (129)
31 3i00_A HIP-I, huntingtin-inter 81.5 7.9 0.00027 33.1 8.8 50 130-185 11-60 (120)
32 3tnu_A Keratin, type I cytoske 81.5 12 0.00041 31.6 9.9 61 133-193 41-105 (131)
33 3oja_B Anopheles plasmodium-re 78.9 16 0.00056 36.0 11.4 24 135-158 454-477 (597)
34 1i84_S Smooth muscle myosin he 78.5 9.7 0.00033 42.2 10.6 34 165-198 885-918 (1184)
35 1j1d_C Troponin I, TNI; THIN f 78.2 4.8 0.00017 35.2 6.6 48 131-178 59-106 (133)
36 3vkg_A Dynein heavy chain, cyt 77.6 19 0.00064 44.8 13.4 38 137-174 1927-1964(3245)
37 3na7_A HP0958; flagellar bioge 76.6 27 0.00092 32.1 11.5 23 210-232 157-179 (256)
38 3q8t_A Beclin-1; autophagy, AT 75.9 31 0.0011 28.1 11.7 67 155-221 15-85 (96)
39 3oja_A Leucine-rich immune mol 75.5 16 0.00054 35.5 10.1 29 167-195 412-440 (487)
40 3vkg_A Dynein heavy chain, cyt 73.0 28 0.00096 43.3 13.3 10 179-188 1990-1999(3245)
41 3oja_B Anopheles plasmodium-re 72.1 63 0.0022 31.8 13.6 36 131-166 457-492 (597)
42 1ic2_A Tropomyosin alpha chain 72.1 30 0.001 27.0 9.2 53 135-187 4-63 (81)
43 3htk_A Structural maintenance 72.1 13 0.00043 27.1 6.6 48 151-198 5-52 (60)
44 2dfs_A Myosin-5A; myosin-V, in 72.0 23 0.00078 39.4 11.4 16 168-183 987-1002(1080)
45 1j1e_C Troponin I, TNI; THIN f 71.4 6.9 0.00024 35.9 6.0 48 131-178 59-106 (180)
46 1x79_B RAB GTPase binding effe 71.0 35 0.0012 29.1 9.9 52 132-183 8-63 (112)
47 1go4_E MAD1 (mitotic arrest de 71.0 7.9 0.00027 32.5 5.9 69 130-198 12-94 (100)
48 3hnw_A Uncharacterized protein 70.5 15 0.00051 31.8 7.7 50 134-183 79-128 (138)
49 2fxo_A Myosin heavy chain, car 70.3 48 0.0016 27.9 12.7 54 167-223 43-96 (129)
50 1ic2_A Tropomyosin alpha chain 69.6 35 0.0012 26.6 9.0 71 147-220 2-72 (81)
51 3u1c_A Tropomyosin alpha-1 cha 67.9 48 0.0017 27.0 12.5 72 147-221 26-97 (101)
52 1i84_S Smooth muscle myosin he 65.7 24 0.00081 39.2 9.9 18 135-152 862-879 (1184)
53 4dk0_A Putative MACA; alpha-ha 65.6 69 0.0024 29.5 11.6 46 118-163 51-96 (369)
54 1ez3_A Syntaxin-1A; three heli 64.7 53 0.0018 26.3 10.1 19 194-212 100-118 (127)
55 2fxo_A Myosin heavy chain, car 62.2 50 0.0017 27.7 9.2 29 170-198 81-109 (129)
56 2v4h_A NF-kappa-B essential mo 61.1 53 0.0018 28.1 9.1 17 211-227 84-100 (110)
57 3s9g_A Protein hexim1; cyclin 60.8 40 0.0014 28.7 8.2 40 170-224 63-104 (104)
58 1ytz_I Troponin I; muscle, THI 60.7 8.4 0.00029 35.4 4.4 48 131-178 56-103 (182)
59 3a7p_A Autophagy protein 16; c 60.4 56 0.0019 29.3 9.6 61 135-202 66-126 (152)
60 1s94_A S-syntaxin; three helix 60.3 49 0.0017 28.5 9.1 68 133-204 39-106 (180)
61 2lw1_A ABC transporter ATP-bin 59.7 24 0.00083 27.9 6.5 48 136-183 21-74 (89)
62 3bas_A Myosin heavy chain, str 59.6 53 0.0018 26.2 8.5 59 136-194 13-71 (89)
63 1gk4_A Vimentin; intermediate 58.4 53 0.0018 25.9 8.2 49 145-193 2-54 (84)
64 2v4h_A NF-kappa-B essential mo 57.8 84 0.0029 26.9 9.8 75 134-222 35-109 (110)
65 1l8d_A DNA double-strand break 56.9 68 0.0023 25.5 8.8 25 134-158 7-31 (112)
66 1l8d_A DNA double-strand break 56.6 72 0.0025 25.3 8.9 25 203-227 78-102 (112)
67 4afl_A P29ING4, inhibitor of g 55.6 53 0.0018 26.3 7.9 35 165-202 18-52 (104)
68 3swf_A CGMP-gated cation chann 55.4 43 0.0015 26.9 7.2 49 133-184 3-51 (74)
69 2yo3_A General control protein 55.4 13 0.00044 36.1 4.9 68 134-205 198-266 (268)
70 3b5n_D Protein transport prote 54.9 65 0.0022 24.5 7.9 61 155-221 3-63 (64)
71 1lrz_A FEMA, factor essential 53.4 35 0.0012 33.0 7.7 49 134-183 244-292 (426)
72 2v71_A Nuclear distribution pr 53.1 1.4E+02 0.0047 27.4 13.2 24 174-197 90-113 (189)
73 4etp_A Kinesin-like protein KA 52.4 10 0.00034 37.6 3.8 28 168-195 27-54 (403)
74 1lwu_C Fibrinogen gamma chain; 52.0 24 0.00083 34.5 6.3 32 144-175 5-36 (323)
75 3o0z_A RHO-associated protein 51.6 1.4E+02 0.0048 27.1 12.4 52 169-223 66-117 (168)
76 4emc_A Monopolin complex subun 50.8 35 0.0012 31.6 6.8 54 129-182 5-58 (190)
77 3swy_A Cyclic nucleotide-gated 49.9 43 0.0015 24.6 5.9 45 134-181 2-46 (46)
78 3u1c_A Tropomyosin alpha-1 cha 47.6 1.1E+02 0.0038 24.8 10.2 26 195-220 50-75 (101)
79 3u59_A Tropomyosin beta chain; 47.0 1.1E+02 0.0038 24.6 12.5 70 148-220 27-96 (101)
80 2yfa_A MCPS, methyl-accepting 46.7 1.4E+02 0.0049 25.8 11.7 67 164-230 177-243 (258)
81 3bas_A Myosin heavy chain, str 46.6 79 0.0027 25.2 7.5 43 141-183 39-81 (89)
82 3fpp_A Macrolide-specific effl 45.8 57 0.0019 29.8 7.5 44 118-161 50-93 (341)
83 3qne_A Seryl-tRNA synthetase, 45.7 46 0.0016 34.2 7.5 15 209-223 91-105 (485)
84 3viq_B Mating-type switching p 44.7 1.3E+02 0.0044 24.6 8.5 60 167-226 3-68 (85)
85 2w83_C C-JUN-amino-terminal ki 44.1 36 0.0012 27.6 5.1 62 136-197 8-69 (77)
86 2dq3_A Seryl-tRNA synthetase; 44.1 55 0.0019 32.5 7.6 23 135-157 35-57 (425)
87 1wle_A Seryl-tRNA synthetase; 43.4 2E+02 0.0068 29.5 11.7 34 208-242 128-161 (501)
88 2b9c_A Striated-muscle alpha t 42.3 1.7E+02 0.0059 25.4 9.9 50 169-221 49-98 (147)
89 4h8s_A DCC-interacting protein 42.2 63 0.0022 30.9 7.5 41 172-219 44-84 (407)
90 2q12_A DIP13 alpha, DCC-intera 42.2 77 0.0026 28.5 7.7 49 171-226 20-68 (265)
91 2fcw_A Alpha-2-macroglobulin r 41.7 1.7E+02 0.0057 25.1 9.3 66 127-199 21-94 (109)
92 2f1m_A Acriflavine resistance 41.4 65 0.0022 28.6 7.0 32 119-150 42-73 (277)
93 2eqb_B RAB guanine nucleotide 41.1 1.6E+02 0.0054 24.6 11.9 85 133-226 8-92 (97)
94 3mq9_A Bone marrow stromal ant 41.0 1.1E+02 0.0037 29.5 8.9 36 134-169 370-411 (471)
95 3mov_A Lamin-B1; LMNB1, B-type 40.8 63 0.0022 26.4 6.2 52 137-191 12-63 (95)
96 2dq0_A Seryl-tRNA synthetase; 40.4 64 0.0022 32.4 7.5 18 208-225 88-105 (455)
97 1x8y_A Lamin A/C; structural p 39.9 84 0.0029 24.9 6.7 27 166-192 29-55 (86)
98 4h22_A Leucine-rich repeat fli 39.3 1.5E+02 0.005 25.2 8.3 61 135-202 7-67 (103)
99 2dq0_A Seryl-tRNA synthetase; 39.2 2E+02 0.0067 28.9 10.8 40 203-243 76-115 (455)
100 1lwu_B Fibrinogen beta chain; 39.1 34 0.0012 33.4 5.1 51 132-188 8-58 (323)
101 4fla_A Regulation of nuclear P 38.3 1.6E+02 0.0055 25.8 8.8 55 165-219 75-130 (152)
102 3onj_A T-snare VTI1; helix, HA 37.8 1.6E+02 0.0054 23.7 10.7 88 133-224 4-94 (97)
103 1zxa_A CGMP-dependent protein 37.0 58 0.002 25.6 5.2 26 173-198 26-51 (67)
104 2q13_A DCC-interacting protein 36.6 60 0.002 30.8 6.3 37 172-215 21-57 (385)
105 1ses_A Seryl-tRNA synthetase; 36.5 1.7E+02 0.0058 29.0 9.7 35 207-242 75-109 (421)
106 3cve_A Homer protein homolog 1 36.1 82 0.0028 25.0 5.9 51 133-183 3-53 (72)
107 1lwu_C Fibrinogen gamma chain; 35.7 61 0.0021 31.7 6.3 50 134-190 9-58 (323)
108 4e81_A Chaperone protein DNAK; 35.6 1.9E+02 0.0066 26.1 9.2 41 186-228 172-212 (219)
109 3plt_A Sphingolipid long chain 35.1 2.7E+02 0.0092 26.4 10.3 51 147-197 72-122 (234)
110 1ses_A Seryl-tRNA synthetase; 35.0 88 0.003 31.0 7.4 21 207-227 82-102 (421)
111 1ez3_A Syntaxin-1A; three heli 34.9 1.7E+02 0.0059 23.3 9.8 69 133-205 8-76 (127)
112 3oja_A Leucine-rich immune mol 34.8 2.8E+02 0.0096 26.8 10.8 17 135-151 365-381 (487)
113 3qne_A Seryl-tRNA synthetase, 34.7 2.4E+02 0.0082 29.0 10.7 37 205-242 80-116 (485)
114 3ghg_A Fibrinogen alpha chain; 34.4 83 0.0029 33.3 7.3 36 191-227 143-189 (562)
115 2ocy_A RAB guanine nucleotide 34.4 2.5E+02 0.0086 25.0 10.5 26 133-158 16-41 (154)
116 1wle_A Seryl-tRNA synthetase; 34.2 90 0.0031 32.0 7.5 33 207-240 134-169 (501)
117 1deq_A Fibrinogen (alpha chain 34.2 90 0.0031 31.7 7.3 19 172-190 148-166 (390)
118 3cvf_A Homer-3, homer protein 33.1 95 0.0032 25.0 5.9 52 132-183 8-59 (79)
119 2lw1_A ABC transporter ATP-bin 32.9 1.8E+02 0.0061 22.8 7.5 52 168-223 32-83 (89)
120 3m91_A Proteasome-associated A 32.4 1.1E+02 0.0036 22.8 5.7 42 136-177 8-49 (51)
121 2fic_A Bridging integrator 1; 31.9 2.7E+02 0.0092 24.6 11.0 27 204-230 180-206 (251)
122 2b5u_A Colicin E3; high resolu 31.9 3E+02 0.01 29.2 10.8 21 206-226 398-418 (551)
123 2ocy_A RAB guanine nucleotide 31.6 1.2E+02 0.0041 27.1 6.9 78 147-227 16-96 (154)
124 4avm_A Bridging integrator 2; 31.3 2.5E+02 0.0085 25.4 9.2 59 172-230 125-187 (237)
125 3fpp_A Macrolide-specific effl 31.0 2.3E+02 0.008 25.7 9.1 27 324-355 259-285 (341)
126 2v71_A Nuclear distribution pr 30.9 3.1E+02 0.011 25.1 13.1 58 136-196 23-80 (189)
127 3qh9_A Liprin-beta-2; coiled-c 30.9 2E+02 0.0069 23.5 7.5 57 162-228 23-79 (81)
128 1d7m_A Cortexillin I; coiled-c 30.7 1.6E+02 0.0055 24.8 7.1 45 139-183 13-57 (101)
129 1s94_A S-syntaxin; three helix 30.7 2E+02 0.0068 24.6 8.1 81 130-211 43-148 (180)
130 1gmj_A ATPase inhibitor; coile 30.5 2.2E+02 0.0077 23.2 8.0 44 150-200 36-79 (84)
131 1m1j_B Fibrinogen beta chain; 30.2 4.7E+02 0.016 26.9 13.6 26 132-157 88-113 (464)
132 3rrk_A V-type ATPase 116 kDa s 30.0 1.8E+02 0.0061 27.2 8.3 48 167-214 228-275 (357)
133 3fx7_A Putative uncharacterize 29.8 1.2E+02 0.0041 25.2 6.2 61 141-201 3-67 (94)
134 2zqm_A Prefoldin beta subunit 28.9 2.1E+02 0.0072 22.5 10.4 28 134-161 17-44 (117)
135 1zww_A SH3-containing GRB2-lik 28.2 2.6E+02 0.0087 25.3 8.8 23 208-230 179-201 (256)
136 2ke4_A CDC42-interacting prote 28.0 2E+02 0.0067 23.7 7.2 24 168-191 18-41 (98)
137 2eqb_B RAB guanine nucleotide 27.5 2.7E+02 0.0092 23.2 8.2 58 166-226 6-63 (97)
138 3u59_A Tropomyosin beta chain; 27.5 2.4E+02 0.0082 22.6 10.2 16 204-219 59-74 (101)
139 2w83_C C-JUN-amino-terminal ki 27.5 2.5E+02 0.0084 22.8 7.6 37 147-183 40-76 (77)
140 3a7p_A Autophagy protein 16; c 27.5 3.1E+02 0.011 24.6 8.8 61 131-191 69-129 (152)
141 1n7s_D SNAP-25A; neuronal snar 27.2 1.9E+02 0.0064 21.3 8.6 62 155-222 3-64 (66)
142 3nmd_A CGMP dependent protein 27.2 1.2E+02 0.004 24.3 5.4 40 133-172 22-61 (72)
143 2dq3_A Seryl-tRNA synthetase; 27.0 1.6E+02 0.0053 29.3 7.6 24 208-231 80-103 (425)
144 3cve_A Homer protein homolog 1 26.8 2.4E+02 0.0081 22.4 8.9 29 170-198 19-47 (72)
145 3hhm_B NISH2 P85alpha; PI3KCA, 26.4 1.7E+02 0.0058 28.9 7.7 19 145-163 213-231 (373)
146 2wt7_A Proto-oncogene protein 26.1 1.6E+02 0.0056 21.9 5.9 20 168-187 33-52 (63)
147 1uuj_A Platelet-activating fac 25.3 37 0.0013 27.9 2.4 34 154-187 47-80 (88)
148 3cvf_A Homer-3, homer protein 25.2 2.7E+02 0.0091 22.4 8.5 17 170-186 25-41 (79)
149 3ghg_A Fibrinogen alpha chain; 24.8 1.4E+02 0.0047 31.7 6.9 23 171-193 144-166 (562)
150 3efg_A Protein SLYX homolog; x 24.6 1.1E+02 0.0037 24.2 4.8 31 167-197 30-60 (78)
151 4b9q_A Chaperone protein DNAK; 24.6 3.5E+02 0.012 27.5 9.9 42 186-229 560-601 (605)
152 3hnw_A Uncharacterized protein 24.2 3.4E+02 0.012 23.3 8.8 9 135-143 37-45 (138)
153 1xaw_A Occludin; coiled-coil, 24.1 3.7E+02 0.013 23.7 9.0 71 132-202 51-135 (140)
154 1sfc_D Protein (SNAP-25B), pro 24.1 2.5E+02 0.0085 22.0 6.9 61 133-200 25-85 (87)
155 1gqe_A Release factor 2, RF2; 24.1 4.2E+02 0.015 26.4 10.1 16 208-223 99-114 (365)
156 1n7s_D SNAP-25A; neuronal snar 23.9 2.2E+02 0.0075 21.0 6.7 58 135-199 8-65 (66)
157 4dk0_A Putative MACA; alpha-ha 23.8 1.6E+02 0.0055 27.1 6.6 26 204-229 130-155 (369)
158 1vcs_A Vesicle transport throu 23.6 2.3E+02 0.0077 22.9 6.8 87 132-222 7-93 (102)
159 3p8q_A GP5, head protein; viru 23.5 17 0.00058 35.1 0.0 53 128-184 15-67 (385)
160 1joc_A EEA1, early endosomal a 23.5 2.5E+02 0.0086 23.4 7.2 28 131-158 5-32 (125)
161 1uru_A Amphiphysin; endocytosi 23.0 3.7E+02 0.013 23.2 9.9 26 205-230 168-193 (244)
162 3m91_A Proteasome-associated A 22.8 2.4E+02 0.0081 20.9 6.5 43 171-223 8-50 (51)
163 2i1j_A Moesin; FERM, coiled-co 22.7 32 0.0011 35.5 1.9 21 131-151 336-356 (575)
164 3nr7_A DNA-binding protein H-N 22.6 1.9E+02 0.0066 23.3 6.0 46 134-181 16-61 (86)
165 1l4a_D S-SNAP25 fusion protein 22.3 1.6E+02 0.0055 23.3 5.5 48 136-183 29-76 (87)
166 3lay_A Zinc resistance-associa 22.1 3.3E+02 0.011 24.3 8.1 17 167-183 115-131 (175)
167 2yy0_A C-MYC-binding protein; 22.0 48 0.0016 24.6 2.2 17 144-160 19-35 (53)
168 2jee_A YIIU; FTSZ, septum, coi 21.8 3.2E+02 0.011 22.1 9.7 34 167-200 43-76 (81)
169 3te3_A Polycystic kidney disea 21.6 96 0.0033 22.2 3.6 25 165-196 7-31 (39)
170 2wps_A Trimeric autotransporte 21.4 1.4E+02 0.0048 25.5 5.2 45 146-204 60-104 (107)
171 3mq7_A Bone marrow stromal ant 21.2 2.2E+02 0.0076 24.7 6.5 28 167-194 73-100 (121)
172 1ux5_A BNI1 protein; structura 20.7 3.8E+02 0.013 25.9 8.9 40 190-229 330-370 (411)
173 1dip_A Delta-sleep-inducing pe 20.5 87 0.003 25.4 3.5 34 153-189 6-39 (78)
174 1dh3_A Transcription factor CR 20.4 77 0.0026 23.4 3.0 27 133-159 25-51 (55)
175 3efg_A Protein SLYX homolog; x 20.4 1.9E+02 0.0066 22.7 5.5 52 168-229 10-61 (78)
176 1eh1_A Ribosome recycling fact 20.3 3.7E+02 0.013 24.3 8.1 56 175-230 112-172 (185)
177 3mq9_A Bone marrow stromal ant 20.2 1.3E+02 0.0043 29.1 5.4 25 156-183 430-454 (471)
178 3caz_A BAR protein; thermo-aci 20.2 5.2E+02 0.018 24.5 9.3 40 168-207 145-188 (294)
179 1wqg_A Ribosome recycling fact 20.1 4E+02 0.014 24.1 8.2 57 174-230 110-171 (185)
No 1
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=6.6e-11 Score=93.86 Aligned_cols=37 Identities=35% Similarity=0.555 Sum_probs=32.5
Q ss_pred CCcchhhhhhhhcccCCCCC-CCCCcccCcccccCCCC
Q 042473 3 ERKFYKTRICVLYQKGRCSR-PTCSFAHGDAELRRPFR 39 (408)
Q Consensus 3 n~~~yKTkLC~~f~~G~C~~-~~C~FAHGe~ELR~~~~ 39 (408)
..+..||+||..|+.|.|+| ++|+||||++|||....
T Consensus 14 R~P~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~ 51 (69)
T 2d9m_A 14 RFPTGYFSICDRYMNGTCPEGNSCKFAHGNAELHEWEE 51 (69)
T ss_dssp CCCCSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHHHHH
T ss_pred cCCCCCcccCcccCcCCCCCCCccCCcCCHHHHhhHHH
Confidence 35667889999998899999 99999999999998643
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.65 E-value=8.7e-09 Score=79.15 Aligned_cols=38 Identities=45% Similarity=0.825 Sum_probs=34.6
Q ss_pred CCCCcchhhhhhhhcc-cCCCCC-CCCCcccCcccccCCC
Q 042473 1 MFERKFYKTRICVLYQ-KGRCSR-PTCSFAHGDAELRRPF 38 (408)
Q Consensus 1 m~n~~~yKTkLC~~f~-~G~C~~-~~C~FAHGe~ELR~~~ 38 (408)
|+.+++|||.||.+|. .|.|++ ++|.|||+..|||.+.
T Consensus 4 ~~~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~ 43 (77)
T 1m9o_A 4 MTTSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN 43 (77)
T ss_dssp CCCSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC
T ss_pred CCCCCCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc
Confidence 5778999999999996 699999 9999999999999754
No 3
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=97.74 E-value=4.1e-06 Score=64.20 Aligned_cols=30 Identities=37% Similarity=0.865 Sum_probs=0.0
Q ss_pred Ccchhhhhhhhcc-cCCCCC-CCCCcccCccc
Q 042473 4 RKFYKTRICVLYQ-KGRCSR-PTCSFAHGDAE 33 (408)
Q Consensus 4 ~~~yKTkLC~~f~-~G~C~~-~~C~FAHGe~E 33 (408)
.+.|||.+|..|. .|.|++ .+|.|||+..|
T Consensus 45 ~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 45 HPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp --------------------------------
T ss_pred cccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 4579999999876 699999 99999999876
No 4
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=7.1e-05 Score=58.60 Aligned_cols=35 Identities=26% Similarity=0.515 Sum_probs=30.3
Q ss_pred CCcchhhhhhhhcccCCCCC-CCCCcccCcccccCC
Q 042473 3 ERKFYKTRICVLYQKGRCSR-PTCSFAHGDAELRRP 37 (408)
Q Consensus 3 n~~~yKTkLC~~f~~G~C~~-~~C~FAHGe~ELR~~ 37 (408)
+...+||.+|.+|.+|.|.+ ++|.|+|.....+.+
T Consensus 4 ~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~ 39 (77)
T 2d9n_A 4 GSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMP 39 (77)
T ss_dssp CCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCTTTSC
T ss_pred CCCCCcceeCHhHccCcCCCCCCCCCccccccCcCC
Confidence 45679999999999999999 999999998765544
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.10 E-value=0.00013 Score=59.96 Aligned_cols=25 Identities=36% Similarity=0.902 Sum_probs=23.9
Q ss_pred chhhhhhhhcccCCCCC-CCCCcccC
Q 042473 6 FYKTRICVLYQKGRCSR-PTCSFAHG 30 (408)
Q Consensus 6 ~yKTkLC~~f~~G~C~~-~~C~FAHG 30 (408)
.+||.+|.+|..|.|.+ ++|.|+|+
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC
Confidence 48999999999999999 99999999
No 6
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=96.88 E-value=0.00029 Score=54.94 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=29.4
Q ss_pred CCcchhhhhhhhcccCCCCC-CCCCcccCcccccCC
Q 042473 3 ERKFYKTRICVLYQKGRCSR-PTCSFAHGDAELRRP 37 (408)
Q Consensus 3 n~~~yKTkLC~~f~~G~C~~-~~C~FAHGe~ELR~~ 37 (408)
+...+|+.+|.+|.+|.|.+ ++|.|+|....-+.+
T Consensus 10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~ 45 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMS 45 (72)
T ss_dssp SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTTSCC
T ss_pred cCCCCcCeeCHHHhcCCCCCCCCCCCccccccccCC
Confidence 46778999999999999999 999999997654433
No 7
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=96.86 E-value=0.00026 Score=54.57 Aligned_cols=29 Identities=34% Similarity=0.777 Sum_probs=22.7
Q ss_pred hhhhhhhcccCCCCC-C-CCCcccCcccccC
Q 042473 8 KTRICVLYQKGRCSR-P-TCSFAHGDAELRR 36 (408)
Q Consensus 8 KTkLC~~f~~G~C~~-~-~C~FAHGe~ELR~ 36 (408)
|..+|..|.+|.|.+ + .|.|+|...++..
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~ 35 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMI 35 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCC
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccc
Confidence 567888888888888 6 5888888877643
No 8
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.83 E-value=0.0024 Score=49.14 Aligned_cols=28 Identities=43% Similarity=0.907 Sum_probs=25.8
Q ss_pred hhhhhhcccCCCCCCCCCcccCcccccC
Q 042473 9 TRICVLYQKGRCSRPTCSFAHGDAELRR 36 (408)
Q Consensus 9 TkLC~~f~~G~C~~~~C~FAHGe~ELR~ 36 (408)
+.+|.+|.+|.|.+.+|.|+|...+|+.
T Consensus 42 ~~vC~~flkG~C~r~~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 42 VTVCMDYIKGRCSREKCKYFHPPAHLQA 69 (70)
T ss_dssp EEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred ceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence 5789999999999999999999999874
No 9
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.61 E-value=0.0026 Score=52.42 Aligned_cols=31 Identities=32% Similarity=0.668 Sum_probs=25.4
Q ss_pred hhhhhhhhcccCCCCC-C-CCCcccCcccccCC
Q 042473 7 YKTRICVLYQKGRCSR-P-TCSFAHGDAELRRP 37 (408)
Q Consensus 7 yKTkLC~~f~~G~C~~-~-~C~FAHGe~ELR~~ 37 (408)
.|..+|++|.+|.|.+ + .|.|+|...++...
T Consensus 18 ~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~ 50 (98)
T 2e5s_A 18 DKLEVCREFQRGNCARGETDCRFAHPADSTMID 50 (98)
T ss_dssp SEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCC
T ss_pred hhhhhhHHHhcCcCCCCCCCCCCcCCchhcccc
Confidence 3568999999999999 6 79999998877543
No 10
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=94.86 E-value=0.0088 Score=48.10 Aligned_cols=32 Identities=34% Similarity=0.802 Sum_probs=26.6
Q ss_pred CCcchhhhhhhhcccCCCCC-C-CCCcccCcccc
Q 042473 3 ERKFYKTRICVLYQKGRCSR-P-TCSFAHGDAEL 34 (408)
Q Consensus 3 n~~~yKTkLC~~f~~G~C~~-~-~C~FAHGe~EL 34 (408)
++...|...|+.|.+|.|.+ + .|.|||-...+
T Consensus 3 ~~~~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~ 36 (83)
T 3d2n_A 3 DTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSC 36 (83)
T ss_dssp -CGGGEEEBCTTGGGTCCCSCTTTCSSBCCCTTC
T ss_pred CcccccchhcHHHhcCCCCCCCCCCCCcCCCccc
Confidence 34567788999999999999 5 99999998654
No 11
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.84 E-value=0.0053 Score=50.62 Aligned_cols=28 Identities=39% Similarity=0.864 Sum_probs=24.9
Q ss_pred hhhhhhcccCCCCCCCCCcccCcccccC
Q 042473 9 TRICVLYQKGRCSRPTCSFAHGDAELRR 36 (408)
Q Consensus 9 TkLC~~f~~G~C~~~~C~FAHGe~ELR~ 36 (408)
+.+|.+|.+|.|.+.+|.|.|...+|+.
T Consensus 56 ~~vC~~flkG~C~r~~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 56 VTVCMDYIKGRCMREKCKYFHPPAHLQA 83 (98)
T ss_dssp EEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred cccchhhccCCCCCCCcCccCChHHHHH
Confidence 4589999999999999999999888754
No 12
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.56 E-value=0.036 Score=43.16 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=28.3
Q ss_pred hhhhhhhccc-CCCCCCCCCcccCcccccCCCCCC
Q 042473 8 KTRICVLYQK-GRCSRPTCSFAHGDAELRRPFRSH 41 (408)
Q Consensus 8 KTkLC~~f~~-G~C~~~~C~FAHGe~ELR~~~~~~ 41 (408)
++.+|.+|.+ |.|..+.|.|+|...+.+.++=.|
T Consensus 37 ~~~~C~~f~~~G~C~~~~C~f~H~~~~~~~~~C~~ 71 (77)
T 2d9n_A 37 KMPECYFYSKFGECSNKECPFLHIDPESKIKDCPW 71 (77)
T ss_dssp TSCBCHHHHHTCCCCCSSCSSBCCCTTSSCSSSSC
T ss_pred cCCCCcccCCCCccCCCCeeccCCCccccCCCCcc
Confidence 6779999998 999999999999988776655443
No 13
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=93.55 E-value=0.018 Score=44.79 Aligned_cols=28 Identities=43% Similarity=0.802 Sum_probs=23.9
Q ss_pred hhhhhhhhccc-CCCCCCCCCcccCcccc
Q 042473 7 YKTRICVLYQK-GRCSRPTCSFAHGDAEL 34 (408)
Q Consensus 7 yKTkLC~~f~~-G~C~~~~C~FAHGe~EL 34 (408)
-++.+|.+|.+ |.|.++.|.|+|.....
T Consensus 42 ~~~~~C~~f~~~G~C~~~~C~y~H~~p~~ 70 (72)
T 2rhk_C 42 TKMSECYFYSKFGECSNKECPFLHIDPES 70 (72)
T ss_dssp TSCCBCHHHHHHSCCSBTTCCSBCCCCC-
T ss_pred ccCCcccccCCCCCCCCCCeeccCCCccc
Confidence 36789999998 99999999999987554
No 14
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=93.53 E-value=0.021 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.773 Sum_probs=21.2
Q ss_pred hhhhhhcc-cCCCCC-CCCCcccCcc
Q 042473 9 TRICVLYQ-KGRCSR-PTCSFAHGDA 32 (408)
Q Consensus 9 TkLC~~f~-~G~C~~-~~C~FAHGe~ 32 (408)
+.+|.+|. .|.|++ ++|.|+|...
T Consensus 36 ~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 36 DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 57899995 799999 9999999854
No 15
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=93.46 E-value=0.023 Score=46.42 Aligned_cols=30 Identities=37% Similarity=0.827 Sum_probs=24.8
Q ss_pred cchhhhhhhhcccCCCCC-C-CCCcccCcccc
Q 042473 5 KFYKTRICVLYQKGRCSR-P-TCSFAHGDAEL 34 (408)
Q Consensus 5 ~~yKTkLC~~f~~G~C~~-~-~C~FAHGe~EL 34 (408)
..-+...|+.|.+|.|.+ + .|.|||-...+
T Consensus 13 ~~~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~ 44 (89)
T 2rpp_A 13 KWLTLEVCRQFQRGTCSRSDEECKFAHPPKSC 44 (89)
T ss_dssp SSSEECBCHHHHHTCCCCCTTTSSSBCCCSSS
T ss_pred CcchhhhchHHhcCCCCCCCCCCCCcCCCccc
Confidence 344567999999999999 5 99999987653
No 16
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=90.90 E-value=0.046 Score=41.29 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.6
Q ss_pred chhhhhhhhccc-CCCCC-CCCCcccCcc
Q 042473 6 FYKTRICVLYQK-GRCSR-PTCSFAHGDA 32 (408)
Q Consensus 6 ~yKTkLC~~f~~-G~C~~-~~C~FAHGe~ 32 (408)
-.+|.||..|.. |.|++ ..|+|-|-.+
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 368999999986 99999 9999999653
No 17
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=90.14 E-value=7.6 Score=32.61 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETN 159 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~ 159 (408)
+..+|.++..++..|......++..
T Consensus 18 ~~~~~~~l~~~l~~l~~~~~~~~~~ 42 (284)
T 1c1g_A 18 ALDRADEAEADKKAAEDRSKQLEDE 42 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333
No 18
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=89.08 E-value=0.11 Score=41.63 Aligned_cols=28 Identities=36% Similarity=0.751 Sum_probs=24.9
Q ss_pred hhhhhhhcccCCCCCCCCCcccCccccc
Q 042473 8 KTRICVLYQKGRCSRPTCSFAHGDAELR 35 (408)
Q Consensus 8 KTkLC~~f~~G~C~~~~C~FAHGe~ELR 35 (408)
+.-.|..|.+|.|.+++|.|.|....|.
T Consensus 42 ~~~vC~dflkG~C~r~~C~y~H~~~~l~ 69 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRENCKYLHPPPHLK 69 (83)
T ss_dssp EEECCHHHHTTCCCCSSCSSCCCCHHHH
T ss_pred ceeehhHhhhccccCCCcceeCChHHHH
Confidence 5678999999999999999999987664
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.07 E-value=0.78 Score=36.76 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=37.5
Q ss_pred hhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 155 QLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 155 ~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
+|+..|++|..|....-.+|.+||.+|..-.++-..+-+.+-||
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888999999999999999999999998777777777777766
No 20
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=87.70 E-value=11 Score=31.51 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEES 188 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeC 188 (408)
..++.+|..+...+..+...-..++..++.--.+...+...+..+..++.....+.
T Consensus 23 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (284)
T 1c1g_A 23 DEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKA 78 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333334433333333333333333
No 21
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=87.10 E-value=7.5 Score=34.68 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESK 189 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCk 189 (408)
+.||.|||+..-|.+.--++-+.+|.-|+.--.-+....++|.+||.+|.-.-..+|
T Consensus 3 ~~lE~qlkeaae~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlK 59 (155)
T 2efr_A 3 KQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLK 59 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999988888888887889999988877888888999999999887443333
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=86.96 E-value=1.7 Score=48.24 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhhhhhhhhc
Q 042473 212 LKRSQARLQKLGYHLGLDAT 231 (408)
Q Consensus 212 LKrsqaRl~kl~d~l~sd~~ 231 (408)
|+..-+.|+.-.|+|-+.++
T Consensus 1028 L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566555443
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.92 E-value=15 Score=33.35 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
+.+...+..-.+|..+...|...|+.-...-+..+..|.||+.++..-.+|-+|+-.+..+.
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~ 116 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV 116 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445666666677777777766677777777778777777777777776655543
No 24
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=85.00 E-value=1.3 Score=37.47 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHH
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKEL 177 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eL 177 (408)
+-+.|.+-.++++.=|..|+++|-+||..+..+--|+..|..||++|
T Consensus 43 ~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 43 NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 44678889999999999999999999999999999999999999998
No 25
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=84.15 E-value=0.28 Score=39.95 Aligned_cols=28 Identities=36% Similarity=0.755 Sum_probs=24.7
Q ss_pred hhhhhhhcccCCCCCCCCCcccCccccc
Q 042473 8 KTRICVLYQKGRCSRPTCSFAHGDAELR 35 (408)
Q Consensus 8 KTkLC~~f~~G~C~~~~C~FAHGe~ELR 35 (408)
+.-.|..|.+|.|.+.+|.|.|....|.
T Consensus 50 ~~~vC~dflkG~C~r~~Cky~H~~~hl~ 77 (89)
T 2rpp_A 50 RVIACFDSLKGRCSRENCKYLHPPTHLK 77 (89)
T ss_dssp BEEBCHHHHHTCCCCTTCCSBCCCHHHH
T ss_pred ceeeehhhhhCcCCCCCcceecCHHHHH
Confidence 5678999999999999999999977654
No 26
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=84.11 E-value=0.27 Score=45.79 Aligned_cols=21 Identities=33% Similarity=1.005 Sum_probs=19.6
Q ss_pred hhhhhcccCCCCC-CCCCcccC
Q 042473 10 RICVLYQKGRCSR-PTCSFAHG 30 (408)
Q Consensus 10 kLC~~f~~G~C~~-~~C~FAHG 30 (408)
.+|.+|.+|.|.+ +.|.|.|.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~ 92 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHH 92 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBS
T ss_pred eEcCccccCCCCCCCCCCccCC
Confidence 3899999999999 99999996
No 27
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=83.60 E-value=3.7 Score=30.92 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=29.3
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl 222 (408)
++.|++.|+.|-.|+..-+.+-.-+.+.+. .|++|-.|+-.||.-+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~----------~ak~eA~RAN~RlDN~ 51 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQ----------AAKDDAARANQRADNA 51 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhcc
Confidence 344556666666555554444444555444 8999999999998743
No 28
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=83.14 E-value=1.4 Score=37.22 Aligned_cols=47 Identities=28% Similarity=0.342 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHH
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKEL 177 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eL 177 (408)
+-+.|.+-.++++.=|..|+++|-+||..+..+--|+..|..||++|
T Consensus 43 ~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 43 NEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 44678888899999999999999999999999999999999999998
No 29
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=83.05 E-value=7.6 Score=35.69 Aligned_cols=27 Identities=7% Similarity=0.006 Sum_probs=12.9
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 201 AHNRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 201 ah~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
+..+.-.++.++...++++..+-..|.
T Consensus 116 ~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 116 LQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555554443
No 30
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.83 E-value=12 Score=31.51 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhh----hhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEK----GQEADILSSRIKELETQLQKEKEESKRIAS 193 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK----~~E~~~Lssri~eLe~qL~kEkeeCkr~tS 193 (408)
-..+.-++..++.+++.|..++..||..|.+- -.++..+...|..||.+|..-+.+|.+..-
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLR 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566688888899999999999999887653 235677889999999999999999877643
No 31
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.47 E-value=7.9 Score=33.14 Aligned_cols=50 Identities=34% Similarity=0.405 Sum_probs=38.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEK 185 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEk 185 (408)
++|+.+=++|+ .+|+.| |..||.+..+--..+..|-.+|+.||.+|.--+
T Consensus 11 d~rD~~Ie~Lk---reie~l---k~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 11 DEKDHLIERLY---REISGL---KAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp CTHHHHHHHHH---HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHH---HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55665555554 566665 567888888888999999999999999998643
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=81.46 E-value=12 Score=31.57 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhh----hhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEK----GQEADILSSRIKELETQLQKEKEESKRIAS 193 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK----~~E~~~Lssri~eLe~qL~kEkeeCkr~tS 193 (408)
..+.-++..++.+++.|..++..||..|.+- -.++..+...|..||.+|..-+.+|.+..-
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~ 105 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQ 105 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999887543 235677889999999999999998877643
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.92 E-value=16 Score=36.01 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHh
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLET 158 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~ 158 (408)
+++++.+++..|..|.++..+.|.
T Consensus 454 l~~e~~~~~~~i~~l~~~~~~~~~ 477 (597)
T 3oja_B 454 LEAEVNELRAEVQQLTNEQIQQEQ 477 (597)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 34
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=78.51 E-value=9.7 Score=42.17 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=17.0
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 165 QEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 165 ~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
.+...|...+++|+.+|..+++.+..+...+..+
T Consensus 885 ~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l 918 (1184)
T 1i84_S 885 QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555554444444444
No 35
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=78.16 E-value=4.8 Score=35.25 Aligned_cols=48 Identities=13% Similarity=0.255 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHH
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELE 178 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe 178 (408)
+-+.|.+-.+++..=|..|+++|-+||..+..+--|+..|..||+||-
T Consensus 59 s~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 59 GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 456788888888888999999999999999999999999999999984
No 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.59 E-value=19 Score=44.79 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRI 174 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri 174 (408)
+.|++....++.|..+-..++..|++|..|++++-..|
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777777777654433
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.62 E-value=27 Score=32.06 Aligned_cols=23 Identities=4% Similarity=-0.137 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcc
Q 042473 210 DDLKRSQARLQKLGYHLGLDATK 232 (408)
Q Consensus 210 deLKrsqaRl~kl~d~l~sd~~k 232 (408)
.++..-.++-+.|+..+..++|+
T Consensus 157 ~e~~~l~~~r~~l~~~i~~~lL~ 179 (256)
T 3na7_A 157 ETQQIIFKKKEDLVEKTEPKIYS 179 (256)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH
Confidence 34444444555566555555543
No 38
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=75.90 E-value=31 Score=28.14 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=44.2
Q ss_pred hhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhHHHHHHHHHHHH
Q 042473 155 QLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNR----HSQMQDDLKRSQARLQK 221 (408)
Q Consensus 155 ~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r----~~raQdeLKrsqaRl~k 221 (408)
.|+..-.+-+.|...|-.--..|+.+|...+.++.++--.=.+|.+-|+- ++..|+++.-..++|.-
T Consensus 15 ~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 15 ELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444555555556677777777777888888888888888854 45677887766666543
No 39
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.51 E-value=16 Score=35.54 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=19.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKI 195 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSki 195 (408)
..++..+..++..++..|++.-++....+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMY 440 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 55677777778888888876544443333
No 40
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.02 E-value=28 Score=43.31 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 042473 179 TQLQKEKEES 188 (408)
Q Consensus 179 ~qL~kEkeeC 188 (408)
..+...|++|
T Consensus 1990 ~ei~~~k~~~ 1999 (3245)
T 3vkg_A 1990 KEIAVQKVKA 1999 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333334
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.12 E-value=63 Score=31.84 Aligned_cols=36 Identities=8% Similarity=-0.013 Sum_probs=20.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQE 166 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E 166 (408)
.-+.++..+..++..+........+++..++++.+.
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~ 492 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRR 492 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 345555666666666655555555555555555443
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=72.08 E-value=30 Score=26.96 Aligned_cols=53 Identities=25% Similarity=0.320 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHh-------hhhhhhHHHHhhHHHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEE-------EKGQEADILSSRIKELETQLQKEKEE 187 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~le-------eK~~E~~~Lssri~eLe~qL~kEkee 187 (408)
+...+..++.|.+...++-.+++.-|. ..-.|+..|..||+-||.+|.+-.+.
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555444444444443333 33455666666666666666654443
No 43
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=72.07 E-value=13 Score=27.13 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=34.4
Q ss_pred hhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 151 DRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 151 d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
+++.+|+-.+++--.+++.+.+++..+-.+|....++|..+...|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666656667777777777777877788888888888776
No 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.02 E-value=23 Score=39.44 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=6.4
Q ss_pred HHHHhhHHHHHHHHHH
Q 042473 168 DILSSRIKELETQLQK 183 (408)
Q Consensus 168 ~~Lssri~eLe~qL~k 183 (408)
..|...+.+|+.++.+
T Consensus 987 ~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 45
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=71.43 E-value=6.9 Score=35.91 Aligned_cols=48 Identities=13% Similarity=0.255 Sum_probs=42.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHH
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELE 178 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe 178 (408)
+-+.|.+-.++++.=|..|+++|-+||..+..+--|+..|..||+||-
T Consensus 59 se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 59 GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 446677788888888899999999999999999999999999999984
No 46
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=71.01 E-value=35 Score=29.14 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhh----hHHHHhhHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQE----ADILSSRIKELETQLQK 183 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E----~~~Lssri~eLe~qL~k 183 (408)
=+.|..++-+++.++..+..++..||-.+.++..+ |..|..+++.-|..|..
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~ 63 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEE 63 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888889999999999999998888654 66677777777777766
No 47
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=70.96 E-value=7.9 Score=32.52 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=50.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhh--hh-----------HHH-HhhHHHHHHHHHHHHHHHHHHHHHH
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQ--EA-----------DIL-SSRIKELETQLQKEKEESKRIASKI 195 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~--E~-----------~~L-ssri~eLe~qL~kEkeeCkr~tSki 195 (408)
..=+.|.+.+++.+.+.+.|+.+|..||+.|+...= +. .-. +.-.+.++..+.+-+.||.|+-.++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999988311 11 111 2223456788888889999988777
Q ss_pred HHH
Q 042473 196 KKF 198 (408)
Q Consensus 196 KKf 198 (408)
+++
T Consensus 92 ~~l 94 (100)
T 1go4_E 92 RAM 94 (100)
T ss_dssp TTC
T ss_pred HHH
Confidence 654
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.48 E-value=15 Score=31.83 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
.|+.||++....|..|..+-..+.+-+++-..|...|-.++++|+.|+.+
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444433
No 49
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=70.32 E-value=48 Score=27.86 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=32.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~ 223 (408)
...|....++|-.||..|++.|.-.-.+...+++.- ..+...|+-.+.||+.+-
T Consensus 43 ~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k---~eLe~~l~el~~rleeee 96 (129)
T 2fxo_A 43 MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNK---IQLEAKVKEMNKRLEDEE 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456666677777888888877766666665555433 233344555555555433
No 50
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.57 E-value=35 Score=26.62 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=37.4
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQ 220 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~ 220 (408)
+++..--..|+.-++.-.+.+..+...+.+++..+.+--++ |++-.||+--+=.-+-++++.|.-++..|+
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~e---v~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDE---LVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555666666666666555443333 444444444444455555555555555554
No 51
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=67.89 E-value=48 Score=26.99 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=46.8
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQK 221 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~k 221 (408)
+.+..+.-+++.....+-+|+..|.-||+-||..|.+-++.. ..-..++--+.+....|..++.--+-|+|=
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L---~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL---HKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555666677788889999998988888876643 344445555566666666666666666553
No 52
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=65.68 E-value=24 Score=39.16 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 042473 135 LLEQLKEVQLDINVLEDR 152 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~ 152 (408)
++++|.+++..+..+.+.
T Consensus 862 L~~eL~el~~~L~~le~~ 879 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAE 879 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444333333
No 53
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=65.55 E-value=69 Score=29.54 Aligned_cols=46 Identities=9% Similarity=0.116 Sum_probs=31.0
Q ss_pred cchhhccccCCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhh
Q 042473 118 NDRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEK 163 (408)
Q Consensus 118 ~d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK 163 (408)
.|.+|.|-....=+...++.+|.+.+..+..++.+-.+.+..|+.-
T Consensus 51 G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a 96 (369)
T 4dk0_A 51 GQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVA 96 (369)
T ss_dssp TSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888775555567788888888887777666555555444433
No 54
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=64.68 E-value=53 Score=26.33 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhhhhhHHH
Q 042473 194 KIKKFVKAHNRHSQMQDDL 212 (408)
Q Consensus 194 kiKKfvKah~r~~raQdeL 212 (408)
-.+||+.+-..|-.+|.+-
T Consensus 100 L~~kf~e~m~~y~~~q~~y 118 (127)
T 1ez3_A 100 LSRKFVEVMSEYNATQSDY 118 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555543
No 55
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=62.17 E-value=50 Score=27.74 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=16.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 170 LSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 170 Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
|..+|.+|+.+|..+.+.+.-++..-||+
T Consensus 81 Le~~l~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 81 LEAKVKEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555554
No 56
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=61.07 E-value=53 Score=28.13 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhhhhh
Q 042473 211 DLKRSQARLQKLGYHLG 227 (408)
Q Consensus 211 eLKrsqaRl~kl~d~l~ 227 (408)
+--|.+.+-+.|..+|+
T Consensus 84 dREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHH
Confidence 33444555555555554
No 57
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=60.83 E-value=40 Score=28.67 Aligned_cols=40 Identities=38% Similarity=0.622 Sum_probs=21.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH--HHHHHhhh
Q 042473 170 LSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQ--ARLQKLGY 224 (408)
Q Consensus 170 Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsq--aRl~kl~d 224 (408)
..+||.+|+..|.+ +++-+.+++-+-++=+.| |+|-|+||
T Consensus 63 ~~~~v~eLe~ever---------------L~~ENq~L~~e~~~~~~~~~~~~~~~~~ 104 (104)
T 3s9g_A 63 LDARVRELELELDR---------------LRAENLQLLTENELHRQQERAPLSKFGD 104 (104)
T ss_dssp HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHCC---------
T ss_pred chhhHHHHHHHHHH---------------HHHHHHHHHHHHHhhccccCCchhhcCC
Confidence 36788888888777 344455566666666666 78888775
No 58
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=60.72 E-value=8.4 Score=35.42 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHH
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELE 178 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe 178 (408)
+-+.|.+-.++++.=|..|+++|-+||..+..+--|+..|..||+||-
T Consensus 56 se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLr 103 (182)
T 1ytz_I 56 SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLR 103 (182)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 566788888889999999999999999999999999999999999983
No 59
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=60.38 E-value=56 Score=29.30 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
+..++..++.++..|+..-.+|+..|.+|..-+..|..-+..|..|++- +..|.+++-+-+
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~-------lE~kl~kLq~EN 126 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNV-------LQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3458888999999999999999999999987777777777777777777 555555555544
No 60
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=60.33 E-value=49 Score=28.49 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNR 204 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r 204 (408)
+.+-.+..+|+.+|..|...-.+|+..-..-+..+. ....+..+|..--.+.++++..||+-||.-..
T Consensus 39 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~----~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~ 106 (180)
T 1s94_A 39 EEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQ----TDDQMKEELEELMTDIKRTANKVRGKLKTIEL 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777776666665555544333222111 11223334444444444455555555555443
No 61
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=59.71 E-value=24 Score=27.86 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhh------hhhhhHHHHhhHHHHHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEE------KGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~lee------K~~E~~~Lssri~eLe~qL~k 183 (408)
...|.++...|..|..+...|+..|.. -..++..|..++.+|+.+|..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 345888888888888888888887742 345666777777777776655
No 62
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=59.63 E-value=53 Score=26.16 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASK 194 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSk 194 (408)
+++|+....++..|.+.-.+.+....+=-.....|....++|-.||....+-|.+|+.+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~ 71 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSK 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444333333333333334566666677777777777777777543
No 63
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=58.40 E-value=53 Score=25.85 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=33.1
Q ss_pred HHHHHHhhhhhhHhHHhhh----hhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 042473 145 DINVLEDRKLQLETNEEEK----GQEADILSSRIKELETQLQKEKEESKRIAS 193 (408)
Q Consensus 145 D~~~L~d~Ks~LE~~leeK----~~E~~~Lssri~eLe~qL~kEkeeCkr~tS 193 (408)
+++.|..++..||..|.+- -.++..+...|..||.+|..-+.++.+..-
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~ 54 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLR 54 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666655432 224567788899999999998888776543
No 64
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.77 E-value=84 Score=26.92 Aligned_cols=75 Identities=20% Similarity=0.135 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLK 213 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLK 213 (408)
..|+.|...+.||+.|...-.+++..| .+|.-|+.|+.==+++.+.=- --=-|++..--+.+++|.
T Consensus 35 ~AEeaL~~Kq~~idelk~ei~q~~~~l-----------E~I~vLkaQv~IY~~DF~aER---adREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 35 QAEEALVAKQELIDKLKEEAEQHKIVM-----------ETVPVLKAQADIYKADFQAER---HAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------THHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHccch---hhHHHHHhHHHHHHHHHH
Confidence 456777777778877777666644444 345666666544333322100 011234444455566666
Q ss_pred HHHHHHHHh
Q 042473 214 RSQARLQKL 222 (408)
Q Consensus 214 rsqaRl~kl 222 (408)
.-|.++++|
T Consensus 101 ~Lq~q~~~l 109 (110)
T 2v4h_A 101 QLQREFNKL 109 (110)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 666665543
No 65
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=56.89 E-value=68 Score=25.50 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHh
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLET 158 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~ 158 (408)
.+++++.++...+..|+.+...|+.
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~ 31 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKN 31 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554443
No 66
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=56.60 E-value=72 Score=25.35 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=12.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 203 NRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 203 ~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
..+..+.+++...+..++.|-..+.
T Consensus 78 ~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 78 NTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544
No 67
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=55.59 E-value=53 Score=26.27 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=24.3
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 165 QEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 165 ~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
.|+..+-+.|.+|+.++..-..+ +-++++||++.+
T Consensus 18 ~El~r~~~~irelD~~~~~~~~~---i~~~~~~~~~~~ 52 (104)
T 4afl_A 18 FELQRNFQLMRDLDQRTEDLKAE---IDKLATEYMSSA 52 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC
Confidence 45666777777777777665544 667888898743
No 68
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=55.38 E-value=43 Score=26.91 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKE 184 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kE 184 (408)
.++|+.+.+++.-|+.|+-.-..|-...+.- -.+|--||+.||.+|...
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccc
Confidence 4689999999999999988777776655543 367888999999887763
No 69
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=55.38 E-value=13 Score=36.05 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHhhh-hhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042473 134 VLLEQLKEVQLDINVLEDRK-LQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRH 205 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~K-s~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~ 205 (408)
+.-.||+..-...+...|.+ ..|..-++.=..+++.+-.+|+++-+.+..-..+. -+||||||.|-+.
T Consensus 198 VNv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 266 (268)
T 2yo3_A 198 VNYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEI----ARIKKLIKLHHHH 266 (268)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCC--------
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhccccccC
Confidence 34457775444333333332 23333333333444444444444444444332222 3479999998654
No 70
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=54.91 E-value=65 Score=24.48 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=41.6
Q ss_pred hhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 042473 155 QLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQK 221 (408)
Q Consensus 155 ~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~k 221 (408)
.+|..+++.+++++.+.+|...|=..++.|-+.--++--+| -...-+...-|..+..||.|
T Consensus 3 ~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI------~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 3 EMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNI------EESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhc
Confidence 36778899999999999999988888888765544433333 22333455556666666654
No 71
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=53.36 E-value=35 Score=33.04 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
++.+.|+.++..++.|.++..+|+..|+++-+ ..+...++.+|+.|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~~~~~~~~~~ 292 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKALKDIEKRPE-NKKAHNKRDNLQQQLDA 292 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666654432 35555666666666655
No 72
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=53.07 E-value=1.4e+02 Score=27.42 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 174 IKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 174 i~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
|+.|+.+|..-++.|..|.-+|++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555443
No 73
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.37 E-value=10 Score=37.61 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=15.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKI 195 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSki 195 (408)
..+...+.+|+.+|.+|...-+++-..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 27 KDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666665555553333
No 74
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=51.98 E-value=24 Score=34.51 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=14.4
Q ss_pred HHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHH
Q 042473 144 LDINVLEDRKLQLETNEEEKGQEADILSSRIK 175 (408)
Q Consensus 144 ~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~ 175 (408)
..+..|.+++.+||..|-..-.++..|...+.
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 34445555555555554444333333333333
No 75
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=51.63 E-value=1.4e+02 Score=27.07 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=38.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~ 223 (408)
.|---+..|-+||..|+.+|.+++--|+-+- +|+--+++||++...++.++-
T Consensus 66 ~Leke~~~LQa~L~qEr~~r~q~se~~~elq---~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 66 QTDKDYYQLQAILEAERRDRGHDSEMIGDLQ---ARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777888999999998888776543 477777888888777776653
No 76
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=50.79 E-value=35 Score=31.63 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=35.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHH
Q 042473 129 SDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQ 182 (408)
Q Consensus 129 s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~ 182 (408)
+-+|...++||-..++=|..|..+-+.|..-|+.|-+|+..|-.+++.|+.|+.
T Consensus 5 ~~YK~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 5 TVYKNSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456888999999999999999999999999999999999998888888888874
No 77
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=49.92 E-value=43 Score=24.63 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
++||.+..++.-++.|+-.-..|-...+.- -.+|--||+.||.++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~~v 46 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 688999999999999988777776655543 468889999999874
No 78
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=47.61 E-value=1.1e+02 Score=24.80 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=14.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHH
Q 042473 195 IKKFVKAHNRHSQMQDDLKRSQARLQ 220 (408)
Q Consensus 195 iKKfvKah~r~~raQdeLKrsqaRl~ 220 (408)
.||+--+-.-+-++|+.|+-++..|+
T Consensus 50 ~kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 50 EKQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455566666666666655
No 79
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=46.96 E-value=1.1e+02 Score=24.59 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=40.4
Q ss_pred HHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 042473 148 VLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQ 220 (408)
Q Consensus 148 ~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~ 220 (408)
.|..+.-+++......-.|+..|.-||+-||.+|..-++..... ..++--+-.....|..++.--+-|+|
T Consensus 27 ~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a---~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 27 QAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA---QEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455566677778888888888877766644433 33444444555555556555555554
No 80
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=46.75 E-value=1.4e+02 Score=25.76 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=48.7
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 042473 164 GQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 164 ~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
..+++.+..-+..|..+|..+..--..+...+..|-.++..|+.+...+....+.|...|+.+...+
T Consensus 177 ~~~~~~~~~~l~~L~~~l~~~~~~l~~~~~~l~~Y~~~~~~~~~a~~~~~~~~~~m~~~g~~l~~~~ 243 (258)
T 2yfa_A 177 LRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRS 243 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666665433344557777888888889999999999999999999998877654
No 81
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.57 E-value=79 Score=25.16 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 141 EVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 141 ~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
++..-+..|..+|.+|...|.+--.-...|..+-.+||.+|..
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555444433333345555555666666655
No 82
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=45.78 E-value=57 Score=29.82 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=28.9
Q ss_pred cchhhccccCCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHh
Q 042473 118 NDRVKERKFTPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEE 161 (408)
Q Consensus 118 ~d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~le 161 (408)
.|.+|.|-....=+...++.||.+.+..+..++.+-.+++..|+
T Consensus 50 G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~ 93 (341)
T 3fpp_A 50 GDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELK 93 (341)
T ss_dssp TCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788877655555577888888888777766655544444433
No 83
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=45.72 E-value=46 Score=34.21 Aligned_cols=15 Identities=7% Similarity=-0.011 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHhh
Q 042473 209 QDDLKRSQARLQKLG 223 (408)
Q Consensus 209 QdeLKrsqaRl~kl~ 223 (408)
.++|+..++.|+.+.
T Consensus 91 e~~~~~~~~~~~~~l 105 (485)
T 3qne_A 91 IEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 84
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=44.74 E-value=1.3e+02 Score=24.65 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=36.5
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhhhhhHHHHH-HHHHHHHhhhhh
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASK-----IKKFVKAHNRHSQMQDDLKR-SQARLQKLGYHL 226 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSk-----iKKfvKah~r~~raQdeLKr-sqaRl~kl~d~l 226 (408)
.+.|.++|..|+.|+..-..+|..+.++ -.+.|+-|-+.+.-=-|+|- .|.=+.++|+.=
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 3566666777777766666666666653 23445555555555556664 466667777653
No 85
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=44.08 E-value=36 Score=27.60 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
-.++..+-.++..|.+-|--|.++=+-=|..++.|++....|-..|..-++--.||-.+|+.
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778888888888776666667777776666655555544444444444443
No 86
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=44.06 E-value=55 Score=32.47 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLE 157 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE 157 (408)
|.++.++++..++.|+.++..+-
T Consensus 35 ~~~~~r~~~~~~~~l~~~~n~~s 57 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSERNKLS 57 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444443
No 87
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.41 E-value=2e+02 Score=29.51 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcc
Q 042473 208 MQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSI 242 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l~sd~~k~g~needsSi 242 (408)
+.++||..++.+..+-..|-.-++.. .|--..+|
T Consensus 128 l~~~i~~l~~~~~~~~~~l~~~l~~i-PN~~~~~v 161 (501)
T 1wle_A 128 IRKQLTLLYPKEAQLEEQFYLRALRL-PNQTHPDV 161 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-CCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCC
Confidence 34555555555555555554443333 44433333
No 88
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=42.31 E-value=1.7e+02 Score=25.44 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=35.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 042473 169 ILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQK 221 (408)
Q Consensus 169 ~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~k 221 (408)
.-..||..||.||...+.-.+ ..-+||--+..+++-++.+|.|+..|.+-
T Consensus 49 ~deEr~~~lE~qLkeak~~ae---eadrKyeE~~RKl~~~E~dLeraeeRae~ 98 (147)
T 2b9c_A 49 KDEEKMEIQEIQLKEAKHIAE---DADRKYEEVARKLVIIESDLERAEERAEL 98 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334588899999987665444 34566777777777777888777777654
No 89
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=42.24 E-value=63 Score=30.92 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 042473 172 SRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARL 219 (408)
Q Consensus 172 sri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl 219 (408)
..|+.+|.+|.. |-..++|++|...+|+.++.++-.++..|
T Consensus 44 a~l~~~E~~~~~-------l~~~l~kl~k~~~~~~~~~~~~~~a~~~f 84 (407)
T 4h8s_A 44 SLLSVFEEDAGT-------LTDYTNQLLQAMQRVYGAQNEMCLATQQL 84 (407)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665 55555556666556655555555555443
No 90
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=42.23 E-value=77 Score=28.53 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 171 SSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 171 ssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
-..|..+|.++.. |-..++|++|+...++.|+.++-.++..|-.--..+
T Consensus 20 R~~l~~~E~~~~~-------l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~ 68 (265)
T 2q12_A 20 RSLLGVFEEDATA-------ISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEY 68 (265)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777766 777888888888888888777777776665544443
No 91
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=41.74 E-value=1.7e+02 Score=25.07 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=47.8
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhh--------hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 127 TPSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQ--------EADILSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 127 ~~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~--------E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
-+.++=+++.+.|+.-+.-|..|+.-..+|++.-+...+ -+++...+.+.|+.++.+ ++-||+|+
T Consensus 21 FT~~ELeSlK~EL~HfE~rl~K~rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk-------~~~kV~Kl 93 (109)
T 2fcw_A 21 LTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKE-------LGYTVKKH 93 (109)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHH-------HHHHHHHH
Confidence 344667889999999999999999999999987544211 133455667777777777 77777774
Q ss_pred H
Q 042473 199 V 199 (408)
Q Consensus 199 v 199 (408)
.
T Consensus 94 ~ 94 (109)
T 2fcw_A 94 L 94 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 92
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=41.40 E-value=65 Score=28.58 Aligned_cols=32 Identities=3% Similarity=-0.067 Sum_probs=22.0
Q ss_pred chhhccccCCCchhhhHHHHHHHHHHHHHHHH
Q 042473 119 DRVKERKFTPSDSKVVLLEQLKEVQLDINVLE 150 (408)
Q Consensus 119 d~~Kd~k~~~s~~k~~leeQLk~v~~D~~~L~ 150 (408)
|.+|.|-....=+...++.+|.+.+.++..+.
T Consensus 42 ~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~ 73 (277)
T 2f1m_A 42 SDIEAGVSLYQIDPATYQATYDSAKGDLAKAQ 73 (277)
T ss_dssp CEECTTSCSEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CEecCCCEEEEECcHHHHHHHHHHHHHHHHHH
Confidence 77887776555555677888888777665543
No 93
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.08 E-value=1.6e+02 Score=24.64 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDL 212 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeL 212 (408)
+.+.+||.+++....-......+|...|.+.. .+-.+.|.++.+-..|-.-+|-.. |--|..-+..|+-+-
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~-------~~R~~aE~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~ 78 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKEN-------ELRTKAEEEADKLNKEVEDLTASL--FDEANNMVADARKEK 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45556666666666555555555554444332 222233333333333333355433 566666555554333
Q ss_pred HHHHHHHHHhhhhh
Q 042473 213 KRSQARLQKLGYHL 226 (408)
Q Consensus 213 KrsqaRl~kl~d~l 226 (408)
-..+-|..+|-.+|
T Consensus 79 ~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 79 YAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 94
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.03 E-value=1.1e+02 Score=29.54 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHH-HHhhhhhhH-----hHHhhhhhhhHH
Q 042473 134 VLLEQLKEVQLDINV-LEDRKLQLE-----TNEEEKGQEADI 169 (408)
Q Consensus 134 ~leeQLk~v~~D~~~-L~d~Ks~LE-----~~leeK~~E~~~ 169 (408)
+.++-|++++..|+. |.+-+.+.| ..|++++.|+.+
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~ 411 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQK 411 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhh
Confidence 456667777777643 333333333 346666665543
No 95
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=40.79 E-value=63 Score=26.37 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 042473 137 EQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRI 191 (408)
Q Consensus 137 eQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~ 191 (408)
.||..++.-+..|...-..+|.-+.. ++..+...|..||.+|..-+.++.+.
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~~~~~---e~~~~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELEDLLAK---EKDNSRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443332 45667778888888888877776554
No 96
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.37 E-value=64 Score=32.43 Aligned_cols=18 Identities=0% Similarity=0.305 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHhhhh
Q 042473 208 MQDDLKRSQARLQKLGYH 225 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~ 225 (408)
+.++++..++.|+.+.-.
T Consensus 88 ~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 88 LENEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444433
No 97
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=39.86 E-value=84 Score=24.91 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=20.2
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIA 192 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~t 192 (408)
++..+...|..||.+|..-+.++.+..
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql 55 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQL 55 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888999888777766553
No 98
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=39.27 E-value=1.5e+02 Score=25.17 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAH 202 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah 202 (408)
+|+..+..=-=+--|.++|+.|- =+|+-|-.++.|+|.++..-+-+|+.-+.-+...-+++
T Consensus 7 vEEKyrKAMVsnAQLDNEKsal~-------YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~ 67 (103)
T 4h22_A 7 VEEKYKKAMVSNAQLDNEKTNFM-------YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAH 67 (103)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444556777777763 46678889999999888877777766555544444443
No 99
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=39.22 E-value=2e+02 Score=28.95 Aligned_cols=40 Identities=8% Similarity=0.146 Sum_probs=26.8
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCccc
Q 042473 203 NRHSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSIN 243 (408)
Q Consensus 203 ~r~~raQdeLKrsqaRl~kl~d~l~sd~~k~g~needsSin 243 (408)
...-.+.++||..++.+..+-..|-.-++.. .|--..+|=
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-pN~~~~~vP 115 (455)
T 2dq0_A 76 AKSREIVKRIGELENEVEELKKKIDYYLWRL-PNITHPSVP 115 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCccCC
Confidence 3444566788888888888888886655544 565555543
No 100
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=39.11 E-value=34 Score=33.37 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEES 188 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeC 188 (408)
++.+|+++++|+.=++....+ +|+. |+.. +..|..+|+.||.+|....+-|
T Consensus 8 ~~~le~~~~~ik~~~~~~~~~--~I~~-Lq~~---le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 8 QKEIENRYKEVKIRIESTVAG--SLRS-MKSV---LEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHHHHHHTHHHHHHHHTTTHH--HHHH-HHTH---HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhHH--HHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777666433222 2322 2322 3566777777777776644444
No 101
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=38.33 E-value=1.6e+02 Score=25.82 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=35.1
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHH
Q 042473 165 QEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNR-HSQMQDDLKRSQARL 219 (408)
Q Consensus 165 ~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r-~~raQdeLKrsqaRl 219 (408)
.+++.-+..+++.-..|..|-++++.++..+..|...|.- +.++...|.--+..+
T Consensus 75 ~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl 130 (152)
T 4fla_A 75 KTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKL 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777888888888888888888888877743 333443343333333
No 102
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=37.75 E-value=1.6e+02 Score=23.65 Aligned_cols=88 Identities=9% Similarity=0.040 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhhhH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRI--ASKIKKFVKAHNRHSQMQD 210 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~--tSkiKKfvKah~r~~raQd 210 (408)
++.|.+++.+..+|...-.+-..+ .-++|..-+..+...+.|++.-|..-.-|..-+ -+..|. +...++-..+-
T Consensus 4 ~~YE~df~~~~~~i~~~l~~~~~~--~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~--~~~~klr~Yk~ 79 (97)
T 3onj_A 4 ISYESDFKTTLEQAKASLAEAPSQ--PLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERA--TYKAKLREWKK 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHHH
Confidence 356777777777775444333222 234555556666666666666666655555556 333332 33345555567
Q ss_pred HHHH-HHHHHHHhhh
Q 042473 211 DLKR-SQARLQKLGY 224 (408)
Q Consensus 211 eLKr-sqaRl~kl~d 224 (408)
+|.+ -+..|.+|.|
T Consensus 80 dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 80 TIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 7888 7788888876
No 103
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=36.95 E-value=58 Score=25.58 Aligned_cols=26 Identities=42% Similarity=0.654 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 173 RIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 173 ri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
+|.+||..|+..+++=..+=+.+.||
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 104
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=36.59 E-value=60 Score=30.83 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 042473 172 SRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRS 215 (408)
Q Consensus 172 sri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrs 215 (408)
..|..+|.++.. |-..|+|++|+...++.|+.++-.+
T Consensus 21 ~~l~~~E~~~~~-------l~~~l~kl~k~~~~~~~a~~~~~~a 57 (385)
T 2q13_A 21 SLLGVFEEDATA-------ISNYMNQLYQAMHRIYDAQNELSAA 57 (385)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555 5555555555555555555555444
No 105
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=36.46 E-value=1.7e+02 Score=28.99 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcc
Q 042473 207 QMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSI 242 (408)
Q Consensus 207 raQdeLKrsqaRl~kl~d~l~sd~~k~g~needsSi 242 (408)
.+.++||..++.+..+-+.|-.-++.. .|--..+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-pN~~~~~v 109 (421)
T 1ses_A 75 ALGEEAKRLEEALREKEARLEALLLQV-PLPPWPGA 109 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCC
Confidence 344555666666666666554433333 45444443
No 106
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.10 E-value=82 Score=25.03 Aligned_cols=51 Identities=25% Similarity=0.252 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
+.+..+|+++...+..|.++-..||.-|+.--++=+.+..-+.-|=.+|..
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~ 53 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDG 53 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667777777777777777777777766665555554444444444443
No 107
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.75 E-value=61 Score=31.71 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKR 190 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr 190 (408)
.+.++|-+++..+.....+...|+..|+ .+.++|++|+.+|..-.+.|..
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~-------~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWR-------VNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555566666666666666666665 4567777887777776666653
No 108
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=35.58 E-value=1.9e+02 Score=26.06 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 186 EESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 186 eeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
++...|...+.+|..+-..- --++++.....|+++++.++.
T Consensus 172 ~~k~~i~~~l~~~~~~L~~~--~~~~i~~~~~~L~~~~~~i~~ 212 (219)
T 4e81_A 172 DDKTAIESALTALETALKGE--DKAAIEAKMQELAQVSQKLME 212 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544211 235566666666666666554
No 109
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=35.10 E-value=2.7e+02 Score=26.37 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=22.8
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
-.|-.+-..||..+--..+..+..=--|.+-|..|+--+..=..++++|-|
T Consensus 72 gvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~k 122 (234)
T 3plt_A 72 GVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAH 122 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444443
No 110
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.01 E-value=88 Score=31.03 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHhhhhhh
Q 042473 207 QMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 207 raQdeLKrsqaRl~kl~d~l~ 227 (408)
.+.++|+..++.|+.+.-.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 82 RLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 455666667777776665554
No 111
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=34.93 E-value=1.7e+02 Score=23.28 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRH 205 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~ 205 (408)
+.+=.+..+|+.+|..|...-.+|...-+.-+..++ ....+..+|..--.+-++++..||.-|++-..-
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~----~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~ 76 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN----PDEKTKEELEELMSDIKKTANKVRSKLKSIEQS 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888777766666554443333322 123355555555556666777777777765443
No 112
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.79 E-value=2.8e+02 Score=26.77 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 042473 135 LLEQLKEVQLDINVLED 151 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d 151 (408)
++.+.++....++.++.
T Consensus 365 l~~~~~~le~~~~~~~~ 381 (487)
T 3oja_A 365 LEQKKKALDEQVSNGRR 381 (487)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 113
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=34.70 E-value=2.4e+02 Score=28.99 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=24.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCcc
Q 042473 205 HSQMQDDLKRSQARLQKLGYHLGLDATKVGGNEEDSSI 242 (408)
Q Consensus 205 ~~raQdeLKrsqaRl~kl~d~l~sd~~k~g~needsSi 242 (408)
.-.+.++||..++.+..+-.+|-.-++.. .|--..+|
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~~~~l~~i-PN~~~~~v 116 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNLRSKINQV-GNIVHESV 116 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCccC
Confidence 33456788888888888888776554444 55544444
No 114
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.36 E-value=83 Score=33.29 Aligned_cols=36 Identities=19% Similarity=0.053 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHh-----------hhhhhhhHHHHHHHHHHHHhhhhhh
Q 042473 191 IASKIKKFVKAH-----------NRHSQMQDDLKRSQARLQKLGYHLG 227 (408)
Q Consensus 191 ~tSkiKKfvKah-----------~r~~raQdeLKrsqaRl~kl~d~l~ 227 (408)
+.++|+||..+- .||+.-|-||+-=+ -+||...||+
T Consensus 143 q~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~-~~QKQLeQv~ 189 (562)
T 3ghg_A 143 QLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYE-DQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccchheeecchHHHH-HHHHHHHHHh
Confidence 566777765543 44554555554332 3445444443
No 115
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.35 E-value=2.5e+02 Score=25.00 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLET 158 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~ 158 (408)
-+|+..|...+..+..+...-.+||.
T Consensus 16 s~LeD~L~~~R~el~~~~~ri~~lE~ 41 (154)
T 2ocy_A 16 SHLEEQLNKSLKTIASQKAAIENYNQ 41 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888877777765555444443
No 116
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.19 E-value=90 Score=32.03 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhh---hhccCCCCCCCC
Q 042473 207 QMQDDLKRSQARLQKLGYHLGL---DATKVGGNEEDS 240 (408)
Q Consensus 207 raQdeLKrsqaRl~kl~d~l~s---d~~k~g~needs 240 (408)
.+.++++..++.|+.+.-.|.- +..-.| +|++.
T Consensus 134 ~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~g-~e~~n 169 (501)
T 1wle_A 134 LLYPKEAQLEEQFYLRALRLPNQTHPDVPVG-DESQA 169 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS-SGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-CCCCC
Confidence 4556667777777766665543 334445 55443
No 117
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.18 E-value=90 Score=31.72 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 042473 172 SRIKELETQLQKEKEESKR 190 (408)
Q Consensus 172 sri~eLe~qL~kEkeeCkr 190 (408)
++|+-||..+.--+.-|++
T Consensus 148 ~kiqRLE~~Id~c~~~C~~ 166 (390)
T 1deq_A 148 VDMKRLEVDIDIKIRSCKG 166 (390)
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 3444455555333334443
No 118
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=33.07 E-value=95 Score=25.02 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
++.+..+|+.....+.-|+++-..||.-|+.--++=+.+..-+.-|=.+|..
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555567777777777777777777777776665555554444444444444
No 119
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.89 E-value=1.8e+02 Score=22.82 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=29.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~ 223 (408)
..|-.+|.+|+.+|+.-. + .++-.-++..+..++-.++.+|-..-.|.+-|-
T Consensus 32 e~LE~~i~~le~~ladp~--~--y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 32 EDLEAKLEALQTQVADAS--F--FSQPHEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHSTT--G--GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcc--c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666654310 0 011234566677777777888877777776653
No 120
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.40 E-value=1.1e+02 Score=22.85 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKEL 177 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eL 177 (408)
+.+|.+++..+..|-.+-..|...|.+--+|+..|.+.|..|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888888888888888887777666666665544
No 121
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=31.95 E-value=2.7e+02 Score=24.60 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=21.5
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 042473 204 RHSQMQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 204 r~~raQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
.+.+|++||..|+..|+.|-++|..++
T Consensus 180 kl~kae~el~~ak~~ye~ln~~L~~eL 206 (251)
T 2fic_A 180 KIAKAEEELIKAQKVFEEMNVDLQEEL 206 (251)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999998888887664
No 122
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=31.88 E-value=3e+02 Score=29.15 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHhhhhh
Q 042473 206 SQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 206 ~raQdeLKrsqaRl~kl~d~l 226 (408)
-+||+||+-.||-|..+...+
T Consensus 398 ~~~~~dv~~~~a~~d~~~~~~ 418 (551)
T 2b5u_A 398 QRAQTDVNNKQAAFDAAAKEK 418 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhcc
Confidence 467999999999999998777
No 123
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.58 E-value=1.2e+02 Score=27.08 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHHHhhhhhhHhHH---hhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 042473 147 NVLEDRKLQLETNE---EEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 147 ~~L~d~Ks~LE~~l---eeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~ 223 (408)
-.|+|.-+.+...| ..++.....+..++..|+.++.....+|.+|... +.....+-..|..+++..+.-|+-|-
T Consensus 16 s~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~---l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 16 SHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLRED---IAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 3466666677778888888888878888887543 44555566667777777777777765
Q ss_pred hhhh
Q 042473 224 YHLG 227 (408)
Q Consensus 224 d~l~ 227 (408)
-.|-
T Consensus 93 asLF 96 (154)
T 2ocy_A 93 ASLF 96 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 124
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=31.31 E-value=2.5e+02 Score=25.41 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 042473 172 SRIKELETQLQKEKEESKRIASKIKKFVKAH----NRHSQMQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 172 sri~eLe~qL~kEkeeCkr~tSkiKKfvKah----~r~~raQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
.-|+.+-.+-..-.-|+.+.-+++.|+..-- ..+.+|+++|..|+.-|+.|-++|..++
T Consensus 125 ~~i~k~I~KR~~kllDyd~~~~~~~kl~~k~~kd~~kl~kae~el~~a~~~ye~lN~~L~~eL 187 (237)
T 4avm_A 125 SEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEEEFNKAQTVFEDLNQELLEEL 187 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455667777777777765321 3466799999999999999999887764
No 125
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=30.96 E-value=2.3e+02 Score=25.71 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=11.6
Q ss_pred ccCCceeeccccchhhhccCccccccCCcccc
Q 042473 324 LKGKNVSTSWFSAQAKNVRSANALALPSTGIA 355 (408)
Q Consensus 324 k~Gk~vs~~~~~~d~K~k~s~~~~~lPST~mA 355 (408)
+-|-+|...|.... .+..+++|.+.+-
T Consensus 259 ~~G~~~~v~i~~~~-----~~~~l~vP~~Av~ 285 (341)
T 3fpp_A 259 RLDMTAQVHIQLTD-----VKNVLTIPLSALG 285 (341)
T ss_dssp CTTCEEEEEEESCC-----CCSSCC-------
T ss_pred CCCCEEEEEEEEcc-----CCCcEEcchHHhc
Confidence 56777765554422 3557888987663
No 126
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=30.91 E-value=3.1e+02 Score=25.07 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIK 196 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK 196 (408)
..++.+++..++-.+..=-.||..|+.-+. .+..++.+|.+++..-+.|+..+-.|..
T Consensus 23 ~q~~~~le~El~EFqesSrELE~ELE~eL~---~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 23 KQSFQEARDELVEFQEGSRELEAELEAQLV---QAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777778888888888888888887654 4455666666666666666555544433
No 127
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.88 E-value=2e+02 Score=23.47 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=35.2
Q ss_pred hhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 042473 162 EKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGL 228 (408)
Q Consensus 162 eK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~s 228 (408)
.=++|+..|--||.+||.+ +--+.+=-.-+| .-+.-.|..|.--.|-|.+|-++|.+
T Consensus 23 ~L~qEi~~Lr~kv~elEnE----rlQyEkKLKsTK------~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENE----RNQYEWKLKATK------AEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhH------HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 4577888888888888863 222222222233 34455667777777777777777654
No 128
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=30.71 E-value=1.6e+02 Score=24.77 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 139 LKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 139 Lk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
|.--.+--+.|-.||.+|+..|..=-.|...-.-+|.+|+++|..
T Consensus 13 Le~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 13 LESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456778888888888887666666667777777777654
No 129
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=30.70 E-value=2e+02 Score=24.63 Aligned_cols=81 Identities=17% Similarity=0.311 Sum_probs=43.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhhhh----------hHhHHhhhhhhhHHHHh----hHHHHHHHHHHHHHHHH------
Q 042473 130 DSKVVLLEQLKEVQLDINVLEDRKLQ----------LETNEEEKGQEADILSS----RIKELETQLQKEKEESK------ 189 (408)
Q Consensus 130 ~~k~~leeQLk~v~~D~~~L~d~Ks~----------LE~~leeK~~E~~~Lss----ri~eLe~qL~kEkeeCk------ 189 (408)
+.=+.....|..|..++..|.....+ +..-|+.-+.++..++. +|..|+..+... +.|.
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~-~~~~~~s~~~ 121 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQE-EHSNKSSADL 121 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-C-----CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCCCcHHH
Confidence 34466777888888888777665433 22334444444444433 555555433221 2232
Q ss_pred HH-----HHHHHHHHHHhhhhhhhhHH
Q 042473 190 RI-----ASKIKKFVKAHNRHSQMQDD 211 (408)
Q Consensus 190 r~-----tSkiKKfvKah~r~~raQde 211 (408)
|| .+-.++|+.+-..|-.+|-+
T Consensus 122 Rir~~q~~~L~~kf~~~m~~yq~~q~~ 148 (180)
T 1s94_A 122 RIRKTQYSTISRKFVEVMSDYNTTQID 148 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34456777777777766654
No 130
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.45 E-value=2.2e+02 Score=23.25 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=25.9
Q ss_pred HhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 150 EDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 150 ~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
..++.||..+=+.-.+|++.-...|.+||.+|.+ +..+|+++-+
T Consensus 36 qkekEqL~~LKkkl~~el~~h~~ei~~le~~i~r-------hk~~i~~l~~ 79 (84)
T 1gmj_A 36 ARAKEQLAALKKHKENEISHHAKEIERLQKEIER-------HKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhh
Confidence 3444555443222246667777777778777765 6666666543
No 131
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.19 E-value=4.7e+02 Score=26.87 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLE 157 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE 157 (408)
.+-|-.|=..|..|++.|.+.-.+|+
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHh
Confidence 34455555556666666666555554
No 132
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.01 E-value=1.8e+02 Score=27.17 Aligned_cols=48 Identities=15% Similarity=0.091 Sum_probs=26.9
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKR 214 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKr 214 (408)
+..|..++++|+..|..-+.+-..++.+....+.++..+++..-+.-.
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~ 275 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYK 275 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666665555566666655555555444444333333
No 133
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=29.77 E-value=1.2e+02 Score=25.20 Aligned_cols=61 Identities=26% Similarity=0.286 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 042473 141 EVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELE----TQLQKEKEESKRIASKIKKFVKA 201 (408)
Q Consensus 141 ~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe----~qL~kEkeeCkr~tSkiKKfvKa 201 (408)
++..|-+-|++=-.+|+..++.=-+|++.|+..-..|+ .|-.+=-|+-+.+.|.++.|+.+
T Consensus 3 qa~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~ 67 (94)
T 3fx7_A 3 RVQMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEA 67 (94)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556677777777888888888888999999988886 34444444555555555555543
No 134
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.94 E-value=2.1e+02 Score=22.48 Aligned_cols=28 Identities=11% Similarity=0.009 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHh
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEE 161 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~le 161 (408)
.+..|+..+...+..|..++..++.+++
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e~~~~~~ 44 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTEAKKALD 44 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666554
No 135
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=28.16 E-value=2.6e+02 Score=25.32 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhh
Q 042473 208 MQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
+++||..|+..|+...+++...+
T Consensus 179 ~eeEle~A~~~fe~~~e~~~~~m 201 (256)
T 1zww_A 179 PDEELRQALEKFDESKEIAESSM 201 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777766554
No 136
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.00 E-value=2e+02 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=16.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 042473 168 DILSSRIKELETQLQKEKEESKRI 191 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~ 191 (408)
.+|-.+|.+|+..|.+|...=..|
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl 41 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREAL 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777765554
No 137
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.55 E-value=2.7e+02 Score=23.24 Aligned_cols=58 Identities=16% Similarity=0.316 Sum_probs=31.1
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhh
Q 042473 166 EADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHL 226 (408)
Q Consensus 166 E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l 226 (408)
+...|-.++..|++++.....+|.+|... |.+...+-..|..+++..+.-|+-|--.|
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~---l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLRED---IAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666665433 33344444455555555555555554333
No 138
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.53 E-value=2.4e+02 Score=22.62 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=7.5
Q ss_pred hhhhhhHHHHHHHHHH
Q 042473 204 RHSQMQDDLKRSQARL 219 (408)
Q Consensus 204 r~~raQdeLKrsqaRl 219 (408)
-+-++++.|+.++..|
T Consensus 59 eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 59 EVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555554444
No 139
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.50 E-value=2.5e+02 Score=22.78 Aligned_cols=37 Identities=30% Similarity=0.248 Sum_probs=14.2
Q ss_pred HHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 147 NVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 147 ~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
+-|.-++..|...|+.-.+=..++..||.+||..|.+
T Consensus 40 dELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 40 DELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444446677777777766643
No 140
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.47 E-value=3.1e+02 Score=24.55 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRI 191 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~ 191 (408)
.-..|+..|...+..|..|.+.-.--...++.=.+|...|.-.++-||.++.+-++|-..+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555544333333344444555666666666666666666655444
No 141
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=27.20 E-value=1.9e+02 Score=21.32 Aligned_cols=62 Identities=10% Similarity=0.222 Sum_probs=38.9
Q ss_pred hhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 042473 155 QLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKL 222 (408)
Q Consensus 155 ~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl 222 (408)
.+|...++.+++++..-+++..|=..+..|-++--.|-.. ....+-+++.-|+.+..|+.+|
T Consensus 3 ~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~------l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 3 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR------IMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777777777765554444333 3355556666677777776665
No 142
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.17 E-value=1.2e+02 Score=24.28 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHh
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSS 172 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lss 172 (408)
-.|+..|..-..+|...+..-..||..|++|-.|+..|-+
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555444444333
No 143
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=26.97 E-value=1.6e+02 Score=29.26 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhc
Q 042473 208 MQDDLKRSQARLQKLGYHLGLDAT 231 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~d~l~sd~~ 231 (408)
+.+++|..++.+..+...|-.-++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 2dq3_A 80 LKEEIDRLEEELRKVEEELKNTLL 103 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544333
No 144
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=26.79 E-value=2.4e+02 Score=22.36 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=11.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 170 LSSRIKELETQLQKEKEESKRIASKIKKF 198 (408)
Q Consensus 170 Lssri~eLe~qL~kEkeeCkr~tSkiKKf 198 (408)
|-.+|..||.+|..-+.+=.++---+|.|
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333333333
No 145
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=26.38 E-value=1.7e+02 Score=28.88 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=8.1
Q ss_pred HHHHHHhhhhhhHhHHhhh
Q 042473 145 DINVLEDRKLQLETNEEEK 163 (408)
Q Consensus 145 D~~~L~d~Ks~LE~~leeK 163 (408)
=|+.|++.|.+|+..|..+
T Consensus 213 ~~~~~~~~~~~l~~~~~~~ 231 (373)
T 3hhm_B 213 RISEIIDSRRRLEEDLKKQ 231 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 146
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.09 E-value=1.6e+02 Score=21.86 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=8.8
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 042473 168 DILSSRIKELETQLQKEKEE 187 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkee 187 (408)
..|...+.+|..++..-+++
T Consensus 33 ~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 33 DQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 147
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=25.29 E-value=37 Score=27.87 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=29.2
Q ss_pred hhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHH
Q 042473 154 LQLETNEEEKGQEADILSSRIKELETQLQKEKEE 187 (408)
Q Consensus 154 s~LE~~leeK~~E~~~Lssri~eLe~qL~kEkee 187 (408)
.+.+-+||+|--=|-.|.-||-|||+++..-+.|
T Consensus 47 ~ky~gLLEKKWTSViRLQKKImdLE~~~~~l~~e 80 (88)
T 1uuj_A 47 KKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEE 80 (88)
T ss_dssp HHHTTHHHHHHTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999988875544
No 148
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.20 E-value=2.7e+02 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.530 Sum_probs=6.9
Q ss_pred HHhhHHHHHHHHHHHHH
Q 042473 170 LSSRIKELETQLQKEKE 186 (408)
Q Consensus 170 Lssri~eLe~qL~kEke 186 (408)
|-.+|..||.+|..-+.
T Consensus 25 Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARA 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 149
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.84 E-value=1.4e+02 Score=31.71 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=14.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q 042473 171 SSRIKELETQLQKEKEESKRIAS 193 (408)
Q Consensus 171 ssri~eLe~qL~kEkeeCkr~tS 193 (408)
-++|+-||+-+.-.-+.|+.=.+
T Consensus 144 ~~kIQRLEvDIdiqirsCKgsCs 166 (562)
T 3ghg_A 144 LVDMKRLEVDIDIKIRSCRGSCS 166 (562)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTBS
T ss_pred HHHHHHHHHHHHHHHHhcccccc
Confidence 45666677766666777775433
No 150
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.65 E-value=1.1e+02 Score=24.22 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=15.8
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKIKK 197 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSkiKK 197 (408)
+..|+.-|.....+|.+-+..|+.|+.+++.
T Consensus 30 IeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 30 LTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555556555543
No 151
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=24.65 E-value=3.5e+02 Score=27.52 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 186 EESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 186 eeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
++...|...+.++..+... .--++++.....|++..+.+++-
T Consensus 560 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~ 601 (605)
T 4b9q_A 560 DDKTAIESALTALETALKG--EDKAAIEAKMQELAQVSQKLMEI 601 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443321 12456777777777777776653
No 152
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.23 E-value=3.4e+02 Score=23.28 Aligned_cols=9 Identities=11% Similarity=0.353 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 042473 135 LLEQLKEVQ 143 (408)
Q Consensus 135 leeQLk~v~ 143 (408)
+.+++.+|.
T Consensus 37 vd~km~ei~ 45 (138)
T 3hnw_A 37 INNKITEFN 45 (138)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 344555554
No 153
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=24.13 E-value=3.7e+02 Score=23.66 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=34.8
Q ss_pred hhhHHHHH---HHHHHHHHHHHhhhhhhHhHHhhh---hhhhHHHHhhHHHHHHH-----HHHHHHHHHHHHHH---HHH
Q 042473 132 KVVLLEQL---KEVQLDINVLEDRKLQLETNEEEK---GQEADILSSRIKELETQ-----LQKEKEESKRIASK---IKK 197 (408)
Q Consensus 132 k~~leeQL---k~v~~D~~~L~d~Ks~LE~~leeK---~~E~~~Lssri~eLe~q-----L~kEkeeCkr~tSk---iKK 197 (408)
|.++..|+ +.++..|.+...+=++|+..|+.- -.|...+...-+.|... ...+|+-|+-|-+| ||.
T Consensus 51 K~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~ 130 (140)
T 1xaw_A 51 KRNFDTGLQEYKSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKK 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554 445666666666666666666541 11222223333333221 34555666665544 455
Q ss_pred HHHHh
Q 042473 198 FVKAH 202 (408)
Q Consensus 198 fvKah 202 (408)
+|..|
T Consensus 131 lI~~Y 135 (140)
T 1xaw_A 131 MVGDY 135 (140)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55444
No 154
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.13 E-value=2.5e+02 Score=22.05 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
....+.|-++..=+..|..-=..+-..|+....=++.|...+......|.. -+.++++|++
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~-------~~~rl~~ll~ 85 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDE-------ANQRATKMLG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHhh
No 155
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=24.08 E-value=4.2e+02 Score=26.41 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHhh
Q 042473 208 MQDDLKRSQARLQKLG 223 (408)
Q Consensus 208 aQdeLKrsqaRl~kl~ 223 (408)
|++||+..+.+|+.|-
T Consensus 99 a~~e~~~l~~~l~~le 114 (365)
T 1gqe_A 99 AVAELDALEEKLAQLE 114 (365)
T ss_dssp HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555554
No 156
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=23.93 E-value=2.2e+02 Score=20.96 Aligned_cols=58 Identities=16% Similarity=0.255 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 135 LLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFV 199 (408)
Q Consensus 135 leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfv 199 (408)
..++|-++..=+..|..-=..+-..|+....=.+.|...+......|.. -+.++++|+
T Consensus 8 qD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~-------~~~rl~~ll 65 (66)
T 1n7s_D 8 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDE-------ANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHc
Confidence 3445555555555555444444444444433344444444444444444 556666654
No 157
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.82 E-value=1.6e+02 Score=27.07 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=15.5
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 204 RHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 204 r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
.+-.||..|+.+|+.|+.+-..|..-
T Consensus 130 ~~~~~~~~l~~~~~~l~~a~~~l~~~ 155 (369)
T 4dk0_A 130 EMDVVQENIKQAEIEVNTAETNLGYT 155 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34445666666777776666665443
No 158
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=23.63 E-value=2.3e+02 Score=22.90 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 042473 132 KVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDD 211 (408)
Q Consensus 132 k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQde 211 (408)
=+..|.|++.+..||...-.+-..+ .-++|..-+..+...+.|++.-|..-.-|-.-+-+..|. +...++-..+-|
T Consensus 7 Fe~YE~df~~l~~~i~~kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~--~~~~klr~Yk~d 82 (102)
T 1vcs_A 7 GEGYEQDFAVLTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRG--MYSNRMRSYKQE 82 (102)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHH--HHHHHHHHHHHH
Confidence 3556777777777775444332222 224444445555555555555444433332223222222 222333333445
Q ss_pred HHHHHHHHHHh
Q 042473 212 LKRSQARLQKL 222 (408)
Q Consensus 212 LKrsqaRl~kl 222 (408)
|.+-+..|.++
T Consensus 83 L~~lk~elk~~ 93 (102)
T 1vcs_A 83 MGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 159
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=23.53 E-value=17 Score=35.14 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHH
Q 042473 128 PSDSKVVLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKE 184 (408)
Q Consensus 128 ~s~~k~~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kE 184 (408)
...-|.-.|++|++|+.--++..+-|.+|+.+ ..|++.|.+|+.+||.++.+.
T Consensus 15 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~ 67 (385)
T 3p8q_A 15 QQKMTQLFDAQKAEIESTGQVSKQLQSDLMKV----QEELTKSGTRLFDLEQKLASG 67 (385)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccc
Confidence 33456667778887776555555555555443 467789999999999999764
No 160
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.45 E-value=2.5e+02 Score=23.39 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhHh
Q 042473 131 SKVVLLEQLKEVQLDINVLEDRKLQLET 158 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d~Ks~LE~ 158 (408)
+|..+-+..-..+.|++.|+.+...|..
T Consensus 5 e~~~~~~~~~~~e~e~~~l~~~~~el~~ 32 (125)
T 1joc_A 5 ERRALLERCLKGEGEIEKLQTKVLELQR 32 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 161
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=23.01 E-value=3.7e+02 Score=23.25 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhh
Q 042473 205 HSQMQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 205 ~~raQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
+-+|+++|..|+..|+.|-++|..++
T Consensus 168 l~~ae~el~~ak~~ye~ln~~L~~eL 193 (244)
T 1uru_A 168 LTKGREQLEEARRTYEILNTELHDEL 193 (244)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44588899999999999988887764
No 162
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.78 E-value=2.4e+02 Score=20.95 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=23.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 042473 171 SSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLG 223 (408)
Q Consensus 171 ssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~ 223 (408)
..|+.+|..|+.. ++.+-.+++.+ +-+|.++|..-.+.+++|+
T Consensus 8 ~~r~~~l~~~l~~-------L~~rN~rL~~~---L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDS-------LAARNSKLMET---LKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 4556666666665 55444444433 3345566665555555554
No 163
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.69 E-value=32 Score=35.51 Aligned_cols=21 Identities=10% Similarity=0.226 Sum_probs=15.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHh
Q 042473 131 SKVVLLEQLKEVQLDINVLED 151 (408)
Q Consensus 131 ~k~~leeQLk~v~~D~~~L~d 151 (408)
.+..++++|++++.++....+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~ 356 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQA 356 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999888865544
No 164
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=22.58 E-value=1.9e+02 Score=23.31 Aligned_cols=46 Identities=24% Similarity=0.324 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHH
Q 042473 134 VLLEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQL 181 (408)
Q Consensus 134 ~leeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL 181 (408)
.|-.+.+++ +++.|.+=-.+|.++++++-.|.........+-+.+|
T Consensus 16 ~LRA~arel--~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl 61 (86)
T 3nr7_A 16 TLRAQARES--TLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKL 61 (86)
T ss_dssp HHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544 8889999999999999999777665544444333333
No 165
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=22.31 E-value=1.6e+02 Score=23.33 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 136 LEQLKEVQLDINVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 136 eeQLk~v~~D~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
++.|.+|..=+..|..-=..+-..|+....=++.|..++..++.+|..
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~ 76 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDE 76 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444
No 166
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.08 E-value=3.3e+02 Score=24.31 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=8.2
Q ss_pred hHHHHhhHHHHHHHHHH
Q 042473 167 ADILSSRIKELETQLQK 183 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~k 183 (408)
++.|..+|.+|..||..
T Consensus 115 I~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 115 INAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555544444
No 167
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.00 E-value=48 Score=24.60 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhhhHhHH
Q 042473 144 LDINVLEDRKLQLETNE 160 (408)
Q Consensus 144 ~D~~~L~d~Ks~LE~~l 160 (408)
.|+++|+.+...|..-+
T Consensus 19 ~d~eaLk~E~~eLk~k~ 35 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKY 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 57777777766665443
No 168
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.78 E-value=3.2e+02 Score=22.11 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=21.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASKIKKFVK 200 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvK 200 (408)
+..+.+....|+.+...-++|-...-++|.+++.
T Consensus 43 ~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 43 VQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555777777777777777777776653
No 169
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=21.59 E-value=96 Score=22.21 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=19.0
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042473 165 QEADILSSRIKELETQLQKEKEESKRIASKIK 196 (408)
Q Consensus 165 ~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiK 196 (408)
+|-..|+-||..||.-|.+ |+|+|-
T Consensus 7 eeF~~L~rRVlqlE~~l~g-------I~S~id 31 (39)
T 3te3_A 7 EEFYMLTRRVLQLETVLEG-------VVSQID 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4667788888888888877 777774
No 170
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION coordination, hydrophobic core, TAA, stutter, stammer, coiled coil; 2.60A {Salmonella enterica subsp} PDB: 2wpr_A
Probab=21.44 E-value=1.4e+02 Score=25.47 Aligned_cols=45 Identities=36% Similarity=0.507 Sum_probs=23.2
Q ss_pred HHHHHhhhhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042473 146 INVLEDRKLQLETNEEEKGQEADILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNR 204 (408)
Q Consensus 146 ~~~L~d~Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r 204 (408)
+-.|-+.-..|.---+.|+.| |-|++--||-.+. ++||+||.|-+
T Consensus 60 ItNLtdsV~~L~dDAed~~~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~ 104 (107)
T 2wps_A 60 INNLSDSITTLMKQIEDKIEE---ILSKIYHIENEIA-----------RIKKLIKLHHH 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-----------HHHHHHC----
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-----------HHHHHHHHhhc
Confidence 344555555555545555433 4456666665554 38999998854
No 171
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.24 E-value=2.2e+02 Score=24.75 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=18.5
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 042473 167 ADILSSRIKELETQLQKEKEESKRIASK 194 (408)
Q Consensus 167 ~~~Lssri~eLe~qL~kEkeeCkr~tSk 194 (408)
+-+|-..|.+|..+|...-++-+|+-..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566677777777777766666665443
No 172
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=20.68 E-value=3.8e+02 Score=25.91 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=29.5
Q ss_pred HHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 190 RIASKIKKFVK-AHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 190 r~tSkiKKfvK-ah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
++..++..|+. |-..+-.+++.+++.+..|..++.-++-|
T Consensus 330 ~f~~~~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged 370 (411)
T 1ux5_A 330 KVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGED 370 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35556677764 44667778888899999999988877665
No 173
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.49 E-value=87 Score=25.44 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=25.6
Q ss_pred hhhhHhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 042473 153 KLQLETNEEEKGQEADILSSRIKELETQLQKEKEESK 189 (408)
Q Consensus 153 Ks~LE~~leeK~~E~~~Lssri~eLe~qL~kEkeeCk 189 (408)
|+.|...+- .|++.|-.+|.||+.+++.-.-||.
T Consensus 6 KtHLm~AVR---EEVevLKe~I~EL~e~~~qLE~EN~ 39 (78)
T 1dip_A 6 KNHLMYAVR---EEVEILKEQIRELVEKNSQLERENT 39 (78)
T ss_dssp TTGGGGTCT---TSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556665554 4688999999999999988666654
No 174
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.39 E-value=77 Score=23.41 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHhH
Q 042473 133 VVLLEQLKEVQLDINVLEDRKLQLETN 159 (408)
Q Consensus 133 ~~leeQLk~v~~D~~~L~d~Ks~LE~~ 159 (408)
+.||.++.++..++..|..+-..|...
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444433
No 175
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.37 E-value=1.9e+02 Score=22.72 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=34.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 042473 168 DILSSRIKELETQLQKEKEESKRIASKIKKFVKAHNRHSQMQDDLKRSQARLQKLGYHLGLD 229 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kEkeeCkr~tSkiKKfvKah~r~~raQdeLKrsqaRl~kl~d~l~sd 229 (408)
..|..||.+||.+|+=-.+-.. ..-.-+.+-|.++-+-+.++..|.+.|..-
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIe----------eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALT----------ELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577899999998775333222 223445677788888888888888888653
No 176
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=20.29 E-value=3.7e+02 Score=24.31 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhh----hhHHHHHHHHHHHHhhhhhhhhh
Q 042473 175 KELETQLQKEKEESKRIASKI-KKFVKAHNRHSQ----MQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 175 ~eLe~qL~kEkeeCkr~tSki-KKfvKah~r~~r----aQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
.+|=-++.+.=|+|+--.-.| +...+..+.+.+ -.|++|++|..+|+|.|..+..|
T Consensus 112 kelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 172 (185)
T 1eh1_A 112 KDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKA 172 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555333333 222233333322 57999999999999999877654
No 177
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.23 E-value=1.3e+02 Score=29.07 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=14.3
Q ss_pred hHhHHhhhhhhhHHHHhhHHHHHHHHHH
Q 042473 156 LETNEEEKGQEADILSSRIKELETQLQK 183 (408)
Q Consensus 156 LE~~leeK~~E~~~Lssri~eLe~qL~k 183 (408)
|...||+|+...- .||.|||.++-+
T Consensus 430 ~~~~~~~~~~~~~---~~~~~~~~~~~~ 454 (471)
T 3mq9_A 430 LMASLDAEKAQGQ---KKVEELEGEITT 454 (471)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4556666654432 367777766655
No 178
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=20.20 E-value=5.2e+02 Score=24.55 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=32.6
Q ss_pred HHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhh
Q 042473 168 DILSSRIKELETQLQKE----KEESKRIASKIKKFVKAHNRHSQ 207 (408)
Q Consensus 168 ~~Lssri~eLe~qL~kE----keeCkr~tSkiKKfvKah~r~~r 207 (408)
++++.||+-=+++|.+. +.-|--|.-+|-++++-|.+++-
T Consensus 145 ~KdSeKI~RNQsKLssAEtaYkqvcsDiInkMnkll~n~~riin 188 (294)
T 3caz_A 145 NKDQERIERNQQKFKDAEAAYSSVCADLIQKMETVWKKHVSIFA 188 (294)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899998888888764 67799999999999998877653
No 179
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=20.05 E-value=4e+02 Score=24.05 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhh----hhHHHHHHHHHHHHhhhhhhhhh
Q 042473 174 IKELETQLQKEKEESKRIASKI-KKFVKAHNRHSQ----MQDDLKRSQARLQKLGYHLGLDA 230 (408)
Q Consensus 174 i~eLe~qL~kEkeeCkr~tSki-KKfvKah~r~~r----aQdeLKrsqaRl~kl~d~l~sd~ 230 (408)
-.+|=-++.+.=|+|+--.-.| +...+..+.+.+ -.|++|++|..+|+|.|..+..|
T Consensus 110 RkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 171 (185)
T 1wqg_A 110 RRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQI 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555556665433333 223333333433 57999999999999999877654
Done!