Query 042474
Match_columns 255
No_of_seqs 172 out of 1015
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 1E-74 2.2E-79 511.6 29.0 238 17-255 19-256 (256)
2 PLN00050 expansin A; Provision 100.0 2E-72 4.4E-77 495.1 26.1 242 7-255 6-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 6.3E-67 1.4E-71 459.9 25.8 229 6-255 4-246 (247)
4 PLN03024 Putative EG45-like do 100.0 2.2E-29 4.7E-34 201.4 13.6 102 29-153 22-125 (125)
5 smart00837 DPBB_1 Rare lipopro 100.0 1.5E-28 3.3E-33 185.2 8.3 87 63-151 1-87 (87)
6 COG4305 Endoglucanase C-termin 100.0 1.1E-26 2.5E-31 192.0 18.7 194 27-255 29-230 (232)
7 PLN00115 pollen allergen group 99.9 6.8E-26 1.5E-30 179.1 11.2 89 161-255 25-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 1.2E-23 2.6E-28 157.1 10.1 78 162-240 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 8.6E-20 1.9E-24 134.8 6.2 76 63-151 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 8.8E-11 1.9E-15 91.4 4.3 60 73-156 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.2 8.9E-06 1.9E-10 64.7 8.9 67 62-156 44-114 (119)
12 TIGR00413 rlpA rare lipoprotei 98.1 3.5E-05 7.7E-10 66.5 10.7 95 31-159 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 98.1 2.5E-05 5.5E-10 68.5 9.7 59 78-157 120-178 (233)
14 PRK10672 rare lipoprotein A; P 97.5 0.0012 2.5E-08 61.7 11.3 93 30-155 80-172 (361)
15 PF02015 Glyco_hydro_45: Glyco 93.5 0.074 1.6E-06 45.9 3.4 42 75-134 82-123 (201)
16 PF03404 Mo-co_dimer: Mo-co ox 80.9 3.1 6.8E-05 33.5 4.7 51 182-232 38-106 (131)
17 cd02110 SO_family_Moco_dimer S 76.9 6.1 0.00013 36.5 5.9 51 182-232 234-293 (317)
18 cd02854 Glycogen_branching_enz 73.9 8.9 0.00019 29.2 5.2 48 186-234 16-76 (99)
19 PRK10564 maltose regulon perip 58.4 35 0.00076 31.5 6.7 75 148-252 47-125 (303)
20 PLN00177 sulfite oxidase; Prov 58.0 29 0.00063 33.2 6.3 21 184-204 296-316 (393)
21 cd02113 bact_SoxC_Moco bacteri 57.5 19 0.00041 33.6 4.9 51 182-232 236-294 (326)
22 cd02114 bact_SorA_Moco sulfite 53.3 23 0.00051 33.5 4.8 51 182-232 286-345 (367)
23 cd02111 eukary_SO_Moco molybdo 52.4 43 0.00092 31.7 6.4 52 181-232 273-339 (365)
24 PF10669 Phage_Gp23: Protein g 49.7 10 0.00022 29.3 1.4 20 3-22 17-36 (121)
25 PF10417 1-cysPrx_C: C-termina 44.8 12 0.00027 23.8 1.1 11 237-247 10-20 (40)
26 PRK13701 psiB plasmid SOS inhi 39.9 88 0.0019 25.6 5.5 42 145-190 58-103 (144)
27 cd02112 eukary_NR_Moco molybdo 39.8 93 0.002 29.7 6.6 20 185-204 301-320 (386)
28 cd02855 Glycogen_branching_enz 37.9 1.2E+02 0.0025 22.4 5.8 34 200-233 49-85 (106)
29 TIGR02588 conserved hypothetic 36.8 2.2E+02 0.0048 22.8 8.1 68 160-228 34-119 (122)
30 KOG0427 Ubiquitin conjugating 34.8 36 0.00078 27.6 2.5 44 209-255 26-69 (161)
31 PRK13697 cytochrome c6; Provis 34.4 8 0.00017 29.4 -1.2 19 1-19 1-19 (111)
32 PLN02252 nitrate reductase [NA 33.1 1.2E+02 0.0026 32.2 6.8 54 179-232 367-436 (888)
33 KOG4192 Uncharacterized conser 32.9 64 0.0014 25.9 3.6 80 121-204 36-124 (134)
34 cd02859 AMPKbeta_GBD_like AMP- 32.5 1.7E+02 0.0038 20.9 5.7 49 186-237 12-63 (79)
35 cd02860 Pullulanase_N_term Pul 30.1 1.8E+02 0.0039 21.5 5.7 33 200-232 39-73 (100)
36 cd02861 E_set_proteins_like E 28.6 1.2E+02 0.0027 21.6 4.4 44 187-233 14-60 (82)
37 PRK10301 hypothetical protein; 28.4 78 0.0017 25.1 3.5 27 141-167 95-124 (124)
38 PF02553 CbiN: Cobalt transpor 27.6 55 0.0012 23.9 2.3 36 1-41 1-36 (74)
39 COG2372 CopC Uncharacterized p 27.2 83 0.0018 25.4 3.4 27 141-167 96-125 (127)
40 PRK15194 type-1 fimbrial prote 26.8 73 0.0016 26.7 3.3 47 1-52 1-49 (185)
41 PF02922 CBM_48: Carbohydrate- 26.8 1.8E+02 0.004 20.4 5.1 50 186-235 22-80 (85)
42 PF08194 DIM: DIM protein; In 26.6 68 0.0015 20.1 2.2 15 1-16 1-15 (36)
43 PF08770 SoxZ: Sulphur oxidati 26.4 98 0.0021 23.6 3.7 25 210-235 72-96 (100)
44 PF04202 Mfp-3: Foot protein 3 23.9 64 0.0014 23.1 1.9 15 1-15 1-15 (71)
45 PF15284 PAGK: Phage-encoded v 23.1 54 0.0012 23.0 1.4 13 13-25 16-28 (61)
46 PF13956 Ibs_toxin: Toxin Ibs, 22.2 51 0.0011 17.5 0.9 13 1-13 1-13 (19)
47 PF04234 CopC: CopC domain; I 22.1 76 0.0016 23.7 2.3 26 142-167 69-97 (97)
48 COG3495 Uncharacterized protei 21.7 72 0.0016 26.4 2.1 23 1-23 1-23 (166)
49 PF11839 DUF3359: Protein of u 20.4 80 0.0017 24.2 2.0 18 1-19 1-18 (96)
50 PF12273 RCR: Chitin synthesis 20.1 44 0.00096 26.5 0.6 6 31-36 30-35 (130)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=1e-74 Score=511.57 Aligned_cols=238 Identities=67% Similarity=1.245 Sum_probs=222.3
Q ss_pred HHhhhhhcCCCeeEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEeChhccCCCCCCCceEEEEecCCCCCccccC
Q 042474 17 LSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRR 96 (255)
Q Consensus 17 ~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~p~~C~~ 96 (255)
+...++.+.++|.+|+|||||++|+.++++|||||+++..++++.++||+|+++|++|++||+||||+|.....|..|.+
T Consensus 19 ~~~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~ 98 (256)
T PLN00193 19 FINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIK 98 (256)
T ss_pred HhhccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccC
Confidence 33444455678999999999999998899999999998888999999999999999999999999999964334678988
Q ss_pred CCEEEEEEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhhccCCeeeeEEEEEEeccCCeeeEEEccccCeeEEE
Q 042474 97 GTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTINGRDYFELVL 176 (255)
Q Consensus 97 g~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~~~~G~v~i~~r~V~C~~~g~i~~~v~ss~~w~~v~ 176 (255)
|++|+|+|||+||++|++|++|++||++++.|||||.+||.+||....|+|+|+||||+|+++|+|+|++++++||++|+
T Consensus 99 g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vl 178 (256)
T PLN00193 99 GASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVL 178 (256)
T ss_pred CCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEE
Confidence 88999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCccceEEEEEEecCCCCeEEcccCCCceEEecCCCCCcceEEEEEecCCcEEEEccccCCCCCCCcEEecCCCC
Q 042474 177 VSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFGQSFKSNVQF 255 (255)
Q Consensus 177 v~n~~g~g~I~sVev~~~gs~~W~~m~r~~g~~W~~~~~~~g~pl~~RvT~~~G~~i~~~~vip~~w~~G~ty~~~vqf 255 (255)
|.|++|+++|++||||+++ ++|++|+|+||++|+++.++.++||+||||+.+|+++++.||||++|++|+||+++|||
T Consensus 179 v~nv~G~gdV~~v~Ik~~~-~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 179 ISNVGGAGSIQSVSIKGSK-TGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred EEEeCCCccEEEEEEecCC-CCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 9999999999999999976 58999999999999999888777999999999999999999999999999999999998
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=2e-72 Score=495.09 Aligned_cols=242 Identities=65% Similarity=1.209 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHhhhhhcCCCeeEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEeChhccCCCCCCCceEEEEec
Q 042474 7 FSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCD 86 (255)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~ 86 (255)
..+++||.+|-.... ...+|.+++|||||++|+.++++|||||+++..++++.++||+|+++|++|++||+||||+|.
T Consensus 6 ~~~~~~~~~~~~~~~--~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~ 83 (247)
T PLN00050 6 YTIVALLSILKIVEG--YGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCV 83 (247)
T ss_pred hhHHHHhhhheeccc--cCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcC
Confidence 345566656544432 246899999999999999999999999999888899999999999999999999999999997
Q ss_pred CCCCCccccCCCEEEEEEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhhccCCeeeeEEEEEEeccCCeeeEEE
Q 042474 87 GRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTI 166 (255)
Q Consensus 87 ~~~~p~~C~~g~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~~~~G~v~i~~r~V~C~~~g~i~~~v 166 (255)
+. +.+|.++ +|+|+|||+||++|+.|+++++||++++.|||||.+||.+||..+.|+|+|+||||+|+++|||+|++
T Consensus 84 ~~--~~~C~~g-sV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v 160 (247)
T PLN00050 84 ND--NIWCLPG-SIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTI 160 (247)
T ss_pred CC--CcccCCC-cEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEE
Confidence 64 4579876 99999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred ccccCeeEEEEEEecCccceEEEEEEecCCCCeEEcccCCCceEEecCCCCCcceEEEEEecCCcEEEEccccCCCCCCC
Q 042474 167 NGRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFG 246 (255)
Q Consensus 167 ~ss~~w~~v~v~n~~g~g~I~sVev~~~gs~~W~~m~r~~g~~W~~~~~~~g~pl~~RvT~~~G~~i~~~~vip~~w~~G 246 (255)
++++||++|+|.|++|+++|++|||++++ ++|++|+|+||++|+++.++.++||+||||+.+|+++++.||||++|++|
T Consensus 161 ~g~sy~~~vlv~nv~G~gdi~~V~ikg~~-~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G 239 (247)
T PLN00050 161 NGHSYFNLVLITNVGGAGDIVAVSIKGSK-SNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFG 239 (247)
T ss_pred cCCceeEEEEEEEcCCCccEEEEEEecCC-CCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCC
Confidence 99899999999999999999999999976 68999999999999998877777999999999999999999999999999
Q ss_pred cEEecCCCC
Q 042474 247 QSFKSNVQF 255 (255)
Q Consensus 247 ~ty~~~vqf 255 (255)
+||+++ ||
T Consensus 240 ~ty~~~-~f 247 (247)
T PLN00050 240 QTYTGM-QF 247 (247)
T ss_pred CeEecC-cC
Confidence 999995 98
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=6.3e-67 Score=459.87 Aligned_cols=229 Identities=28% Similarity=0.555 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCeeEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEeChhccCCCCCCCceEEEEe
Q 042474 6 AFSFVALILTLLSIKINAASAAWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVC 85 (255)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c 85 (255)
++++++|+++++++. +.+.++|.+++|||||++++.|+.+|||||+++..+.++.++||++ ++|++|++||+||||+|
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC 81 (247)
T PLN03023 4 SHYCCFLCVIVLLPL-LCKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRC 81 (247)
T ss_pred hhhHHHHHHHHHhhh-hhhcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeec
Confidence 345555555555554 3445679999999999999999999999999988888889999998 99999999999999999
Q ss_pred cCCCCCccccCCCEEEEEEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhh-------ccCCeeeeEEEEEEecc
Q 042474 86 DGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAI-------YRAGIVPVLYRKVGCMR 158 (255)
Q Consensus 86 ~~~~~p~~C~~g~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~-------~~~G~v~i~~r~V~C~~ 158 (255)
.+ |.+|.++ +|+|+|||.||. + +.|||||.+||.+||. ...|+|+|+||||+|.+
T Consensus 82 ~~---~~~C~~~-~v~V~iTd~~~~-----------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~ 143 (247)
T PLN03023 82 KA---PNLCSDD-GVNVVVTDYGEG-----------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRY 143 (247)
T ss_pred CC---CCccCCC-CeEEEEEeCCCC-----------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEeccc
Confidence 75 5689876 899999999985 3 6899999999999998 46799999999999999
Q ss_pred CC-eeeEEEc--cc-cCeeEEEEEEecCccceEEEEEEecCCCCeEEcccCCCceEEecCCCCCcceEEEE--EecCCcE
Q 042474 159 SG-GLRFTIN--GR-DYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRV--QTSNGRT 232 (255)
Q Consensus 159 ~g-~i~~~v~--ss-~~w~~v~v~n~~g~g~I~sVev~~~gs~~W~~m~r~~g~~W~~~~~~~g~pl~~Rv--T~~~G~~ 232 (255)
+| +|+|+|+ ++ ++|++|+|.|++|+++|++||||++++.+|++|+|+||++|+++.+|+| ||+||+ |+.+|++
T Consensus 144 ~G~~i~F~V~~~s~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~ 222 (247)
T PLN03023 144 AGYNLFFKVHEHSRFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQT 222 (247)
T ss_pred CCCceEEEEecCCCCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcE
Confidence 99 9999997 33 7799999999999999999999998778999999999999999989998 666555 4557755
Q ss_pred -EEEccccCCCCCCCcEEecCCCC
Q 042474 233 -RTAYNVAPSNWRFGQSFKSNVQF 255 (255)
Q Consensus 233 -i~~~~vip~~w~~G~ty~~~vqf 255 (255)
++++||||++|++|+||+++|||
T Consensus 223 ~vva~nViPa~Wk~G~TY~s~vq~ 246 (247)
T PLN03023 223 WVQAKNVIPSDWKAGVAYDSNIQL 246 (247)
T ss_pred EEEECceeCCCCCCCCEEeccccc
Confidence 89999999999999999999998
No 4
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.96 E-value=2.2e-29 Score=201.42 Aligned_cols=102 Identities=36% Similarity=0.725 Sum_probs=86.1
Q ss_pred eEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEeChhccCCCCCCCceEEEEecCCC--CCccccCCCEEEEEEeC
Q 042474 29 MQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRK--VPQWCRRGTSIIITATN 106 (255)
Q Consensus 29 ~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~--~p~~C~~g~sv~v~VtD 106 (255)
.+|+||||++++ .||| |++ .+++.++||+|+++|++|+.||+||||+|.+.. .+.+|. +++|+|+|+|
T Consensus 22 ~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~-gksV~V~VtD 91 (125)
T PLN03024 22 TPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCT-GKSVTVKIVD 91 (125)
T ss_pred cceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCcccccccc-CCeEEEEEEc
Confidence 479999998643 5799 444 346789999999999999999999999997642 245786 5799999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhhccCCeeeeEEEE
Q 042474 107 FCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRK 153 (255)
Q Consensus 107 ~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~~~~G~v~i~~r~ 153 (255)
+||+. |. .|||||++||++||+++.|+++|+|.+
T Consensus 92 ~CP~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 92 HCPSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred CCCCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 99952 74 699999999999999999999999974
No 5
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.95 E-value=1.5e-28 Score=185.24 Aligned_cols=87 Identities=75% Similarity=1.437 Sum_probs=80.9
Q ss_pred EEEeChhccCCCCCCCceEEEEecCCCCCccccCCCEEEEEEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhhc
Q 042474 63 TAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIY 142 (255)
Q Consensus 63 ~aA~s~~~~~~g~~CG~C~eV~c~~~~~p~~C~~g~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~~ 142 (255)
+||+|+++|++|++||+||||+|.+. |..|.++++|+|+|||+||++|+.|+++++||++++.|||||.+||.+||++
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~--~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~ 78 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDS--PKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQY 78 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCC--CCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhh
Confidence 48999999999999999999999653 6689887799999999999999999999999998899999999999999999
Q ss_pred cCCeeeeEE
Q 042474 143 RAGIVPVLY 151 (255)
Q Consensus 143 ~~G~v~i~~ 151 (255)
+.|+|+|+|
T Consensus 79 ~~Gvi~v~y 87 (87)
T smart00837 79 KAGIVPVKY 87 (87)
T ss_pred cCCEEeeEC
Confidence 999999987
No 6
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=191.99 Aligned_cols=194 Identities=21% Similarity=0.298 Sum_probs=154.9
Q ss_pred CeeEEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEeChhccCCC----CCCCceEEEEecCCCCCccccCCCEEEE
Q 042474 27 AWMQAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNG----KSCGGCYHIVCDGRKVPQWCRRGTSIII 102 (255)
Q Consensus 27 ~~~~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~eV~c~~~~~p~~C~~g~sv~v 102 (255)
+-++|.|||-|.. ..+||=- +++.+-+..+.|+++.+-+-| +.-|+.++|.. | +| +.+|
T Consensus 29 ~~f~G~ATyTgsG----YsGGAfl---LDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG-----P----KG-~TTV 91 (232)
T COG4305 29 DLFEGYATYTGSG----YSGGAFL---LDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG-----P----KG-KTTV 91 (232)
T ss_pred cccceeEEEeccc----ccCceEE---ecCcCCcceeeecCHHHcccCCchhhhccceEEEEC-----C----CC-ceEE
Confidence 3467999987642 2467764 344455667999999887754 67899999987 4 46 7789
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhhccCCeeeeEEEEEEeccCCeeeEEEc--cccCeeEEEEEEe
Q 042474 103 TATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRSGGLRFTIN--GRDYFELVLVSNV 180 (255)
Q Consensus 103 ~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~~~~G~v~i~~r~V~C~~~g~i~~~v~--ss~~w~~v~v~n~ 180 (255)
.|||+.|++ ..+.+|||+.||.+|.++.+|+|+|+||.|+-|..||+.+++| |+.||.++||+|+
T Consensus 92 YVTDlYPeg-------------asGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH 158 (232)
T COG4305 92 YVTDLYPEG-------------ASGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNH 158 (232)
T ss_pred EEecccccc-------------cccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeecc
Confidence 999999983 2689999999999999999999999999999999999999998 6789999999999
Q ss_pred cCccceEEEEEEecCCCCeEEcccCCCceEEecCCCCCcceEEEEEecCCcEEEEcc-ccCCCCCC-CcEEecCCCC
Q 042474 181 GGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYN-VAPSNWRF-GQSFKSNVQF 255 (255)
Q Consensus 181 ~g~g~I~sVev~~~gs~~W~~m~r~~g~~W~~~~~~~g~pl~~RvT~~~G~~i~~~~-vip~~w~~-G~ty~~~vqf 255 (255)
.- +|.++|+.+.+ .|..|.+.++|+|.-.+.-. .||.+|+||+.|+.++..- .+|..-.- --+-.+.|||
T Consensus 159 ~y--PV~KlE~~qdg--~WinlpK~dYNhFVgT~LG~-~pL~~RmTDIRG~~l~DtlP~Lpk~asSKaY~V~G~VQF 230 (232)
T COG4305 159 KY--PVMKLEYEQDG--KWINLPKMDYNHFVGTNLGT-GPLKVRMTDIRGKVLKDTLPKLPKSASSKAYTVPGHVQF 230 (232)
T ss_pred cC--ceEEEEEecCC--eEeeccccccceeeccccCC-CceEEEEeecccceeecccccccccccCCceeecceeec
Confidence 86 69999999874 89999999999998765444 4999999999999887532 44532221 1234566666
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.93 E-value=6.8e-26 Score=179.12 Aligned_cols=89 Identities=20% Similarity=0.352 Sum_probs=81.2
Q ss_pred eeeEEEc--cccCeeEEEEEEecCccceEEEEEEecCCCCeE-EcccCCCceEEecC--CCCCcceEEEEEecCCcEEEE
Q 042474 161 GLRFTIN--GRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQ-VMSRNWGANWQSLT--YLNAQSLSFRVQTSNGRTRTA 235 (255)
Q Consensus 161 ~i~~~v~--ss~~w~~v~v~n~~g~g~I~sVev~~~gs~~W~-~m~r~~g~~W~~~~--~~~g~pl~~RvT~~~G~~i~~ 235 (255)
+|+|+|+ ++++||++++ | ++|.+|||+++++.+|+ +|+|+||++|+++. +|+| ||+||+|+.+|+++++
T Consensus 25 ~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va 98 (118)
T PLN00115 25 EVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV 98 (118)
T ss_pred ceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence 9999998 5699997765 3 25999999999878999 99999999999864 7887 9999999999999999
Q ss_pred ccccCCCCCCCcEEecCCCC
Q 042474 236 YNVAPSNWRFGQSFKSNVQF 255 (255)
Q Consensus 236 ~~vip~~w~~G~ty~~~vqf 255 (255)
+||||++|++|+||++++||
T Consensus 99 ~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 99 DDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CceECCCCCCCCEEeccccC
Confidence 99999999999999999998
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.90 E-value=1.2e-23 Score=157.11 Aligned_cols=78 Identities=44% Similarity=0.743 Sum_probs=65.9
Q ss_pred eeEEEc--cccCeeEEEEEEecCccceEEEEEEecCCCCeEEcccCCCceEEec-CCCCCcceEEEEEecC-CcEEEEcc
Q 042474 162 LRFTIN--GRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSL-TYLNAQSLSFRVQTSN-GRTRTAYN 237 (255)
Q Consensus 162 i~~~v~--ss~~w~~v~v~n~~g~g~I~sVev~~~gs~~W~~m~r~~g~~W~~~-~~~~g~pl~~RvT~~~-G~~i~~~~ 237 (255)
|+|+|+ |++|||+|+|.|++|+++|++|||+++++.+|++|+|+||++|+++ .++++ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 689998 4699999999999999999999999999888999999999999998 66665 9999999977 99999999
Q ss_pred ccC
Q 042474 238 VAP 240 (255)
Q Consensus 238 vip 240 (255)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.80 E-value=8.6e-20 Score=134.76 Aligned_cols=76 Identities=37% Similarity=0.767 Sum_probs=61.2
Q ss_pred EEEeChhccCCCCCCCceEEEEecCCCCC-ccccCC-CEEEEEEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhh
Q 042474 63 TAALSTVLFNNGKSCGGCYHIVCDGRKVP-QWCRRG-TSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIA 140 (255)
Q Consensus 63 ~aA~s~~~~~~g~~CG~C~eV~c~~~~~p-~~C~~g-~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la 140 (255)
+||++..+|++|.+||+||+++|.....+ ..|..+ ++|+|+|+|+||+ |. ..|||||+.||++||
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la 67 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA 67 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence 58999999999999999999999432211 127653 7999999999998 86 799999999999999
Q ss_pred hccCCeeeeEE
Q 042474 141 IYRAGIVPVLY 151 (255)
Q Consensus 141 ~~~~G~v~i~~ 151 (255)
.++.|+++|+|
T Consensus 68 ~~~~G~i~V~w 78 (78)
T PF03330_consen 68 DPDAGVIPVEW 78 (78)
T ss_dssp STTCSSEEEEE
T ss_pred CCCceEEEEEC
Confidence 99999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.09 E-value=8.8e-11 Score=91.44 Aligned_cols=60 Identities=25% Similarity=0.587 Sum_probs=44.6
Q ss_pred CCCCCCceEEEEecCCCCCccccCCCEEEEEEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhh----ccCCeee
Q 042474 73 NGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAI----YRAGIVP 148 (255)
Q Consensus 73 ~g~~CG~C~eV~c~~~~~p~~C~~g~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~----~~~G~v~ 148 (255)
....||+|++|+.+. +|.+++|+|+|+|+. ++|||++.+|++|-. ...|.+.
T Consensus 56 gq~~CGkClrVTNt~--------tga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~ 111 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA--------TGAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLI 111 (119)
T ss_dssp SGGGTT-EEEEE-TT--------T--EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEE
T ss_pred CcccccceEEEEecC--------CCcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEE
Confidence 457899999999865 478999999999975 589999999999942 4679999
Q ss_pred eEEEEEEe
Q 042474 149 VLYRKVGC 156 (255)
Q Consensus 149 i~~r~V~C 156 (255)
|.|++|+|
T Consensus 112 V~y~fV~C 119 (119)
T PF00967_consen 112 VDYEFVDC 119 (119)
T ss_dssp EEEEEE--
T ss_pred EEEEEEcC
Confidence 99999999
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.22 E-value=8.9e-06 Score=64.66 Aligned_cols=67 Identities=22% Similarity=0.420 Sum_probs=48.7
Q ss_pred eEEEeCh-hccCCCCCCCceEEEEecCCCCCccccCCCEEEEEEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhh
Q 042474 62 KTAALST-VLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIA 140 (255)
Q Consensus 62 ~~aA~s~-~~~~~g~~CG~C~eV~c~~~~~p~~C~~g~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la 140 (255)
.|.+... +-|+ ...||.|+|++- +|++|.|..+|.=+ ..|+|+.+||+.|.
T Consensus 44 ~IGg~~~V~gWn-S~~CGtC~~lty----------~g~si~vlaID~a~-----------------~gfnis~~A~n~LT 95 (119)
T PF07249_consen 44 YIGGAPAVAGWN-SPNCGTCWKLTY----------NGRSIYVLAIDHAG-----------------GGFNISLDAMNDLT 95 (119)
T ss_dssp SEEEETT--STT--TTTT-EEEEEE----------TTEEEEEEEEEE-S-----------------SSEEE-HHHHHHHH
T ss_pred eeccccccccCC-CCCCCCeEEEEE----------CCeEEEEEEEecCC-----------------CcccchHHHHHHhc
Confidence 4666655 4575 578999999998 47899999999743 46999999999997
Q ss_pred h---ccCCeeeeEEEEEEe
Q 042474 141 I---YRAGIVPVLYRKVGC 156 (255)
Q Consensus 141 ~---~~~G~v~i~~r~V~C 156 (255)
. ...|+|+++|++|+-
T Consensus 96 ~g~a~~lG~V~a~~~qV~~ 114 (119)
T PF07249_consen 96 NGQAVELGRVDATYTQVDP 114 (119)
T ss_dssp TS-CCCC-EEE-EEEEE-H
T ss_pred CCcccceeEEEEEEEEcCH
Confidence 6 467999999999973
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=98.10 E-value=3.5e-05 Score=66.52 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=70.5
Q ss_pred EEEEEecCC-CCCCCCccccCCCcCCCCCCCCeEEEeChhccCCCCCCCceEEEEecCCCCCccccCCCEEEEEEeCCCC
Q 042474 31 AHATFYGGS-DASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCP 109 (255)
Q Consensus 31 g~aT~Yg~~-~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~p~~C~~g~sv~v~VtD~Cp 109 (255)
|.|+|||.. .| ...|.|-. ++ ...|+||=.+ ...|...+|+... +|++|+|+|.|++|
T Consensus 1 G~ASwYg~~f~G---~~TAnGe~--y~--~~~~tAAHkt------LPlgT~V~VtNl~--------ngrsviVrVnDRGP 59 (208)
T TIGR00413 1 GLASWYGPKFHG---RKTANGEV--YN--MKALTAAHKT------LPFNTYVKVTNLH--------NNRSVIVRINDRGP 59 (208)
T ss_pred CEEeEeCCCCCC---CcCCCCee--cC--CCcccccccc------CCCCCEEEEEECC--------CCCEEEEEEeCCCC
Confidence 689999853 22 23455422 11 1235565543 3568999999865 58999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeeChHHHHhhhhccCCeeeeEEEEEEeccC
Q 042474 110 PNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCMRS 159 (255)
Q Consensus 110 ~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~~~~G~v~i~~r~V~C~~~ 159 (255)
-. +..-+|||..|+++|.-...|+.+|+.+.+.....
T Consensus 60 f~-------------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 60 FS-------------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred CC-------------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence 72 24689999999999999999999999999987654
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=98.08 E-value=2.5e-05 Score=68.47 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=51.7
Q ss_pred CceEEEEecCCCCCccccCCCEEEEEEeCCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhhhccCCeeeeEEEEEEec
Q 042474 78 GGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVGCM 157 (255)
Q Consensus 78 G~C~eV~c~~~~~p~~C~~g~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~~~~G~v~i~~r~V~C~ 157 (255)
|...+|+..+ +|++|+|+|.|++|- . ..-.+|||..|+++|+-.+.|+.+|+.+.+.+.
T Consensus 120 ~t~v~VtNl~--------NgrsvvVRINDRGPf------------~-~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 120 PTYVRVTNLD--------NGRSVVVRINDRGPF------------V-SGRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCEEEEEEcc--------CCcEEEEEEeCCCCC------------C-CCcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 6677888875 589999999999995 2 246899999999999999999999999999976
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.50 E-value=0.0012 Score=61.71 Aligned_cols=93 Identities=19% Similarity=0.173 Sum_probs=63.2
Q ss_pred EEEEEEecCCCCCCCCccccCCCcCCCCCCCCeEEEeChhccCCCCCCCceEEEEecCCCCCccccCCCEEEEEEeCCCC
Q 042474 30 QAHATFYGGSDASETMGGACGYGNLYTDGYGTKTAALSTVLFNNGKSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCP 109 (255)
Q Consensus 30 ~g~aT~Yg~~~~~~~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~eV~c~~~~~p~~C~~g~sv~v~VtD~Cp 109 (255)
.|.|+|||..... ...|.|-- ++ ...|+||-.+- .-|...+|+... +||+|+|+|.|++|
T Consensus 80 ~G~ASwYg~~f~G--~~TA~Ge~--~~--~~~~tAAH~tL------Plps~vrVtNl~--------ngrsvvVrVnDRGP 139 (361)
T PRK10672 80 AGLAAIYDAEAGS--NLTASGER--FD--PNALTAAHPTL------PIPSYVRVTNLA--------NGRMIVVRINDRGP 139 (361)
T ss_pred EEEEEEeCCccCC--CcCcCcee--ec--CCcCeeeccCC------CCCCEEEEEECC--------CCcEEEEEEeCCCC
Confidence 5889999853210 12233311 11 12356665432 448889999865 58999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCceeeChHHHHhhhhccCCeeeeEEEEEE
Q 042474 110 PNYDLPNDNGGWCNPPRAHFDMSQPAFESIAIYRAGIVPVLYRKVG 155 (255)
Q Consensus 110 ~~~~~~~~~~~~C~~~~~~~DLs~~AF~~la~~~~G~v~i~~r~V~ 155 (255)
-. +..-+|||..|+++|.-...+.+.|+.-.|.
T Consensus 140 ~~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~ 172 (361)
T PRK10672 140 YG-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVA 172 (361)
T ss_pred CC-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeC
Confidence 72 2468999999999998877777777776663
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=93.51 E-value=0.074 Score=45.92 Aligned_cols=42 Identities=24% Similarity=0.532 Sum_probs=28.3
Q ss_pred CCCCceEEEEecCCCCCccccCCCEEEEEEeCCCCCCCCCCCCCCCCCCCCCCceeeChH
Q 042474 75 KSCGGCYHIVCDGRKVPQWCRRGTSIIITATNFCPPNYDLPNDNGGWCNPPRAHFDMSQP 134 (255)
Q Consensus 75 ~~CG~C~eV~c~~~~~p~~C~~g~sv~v~VtD~Cp~~~~~~~~~~~~C~~~~~~~DLs~~ 134 (255)
..|++|||++-+++.. +||+.+|++|+.=-. = +.+||||..+
T Consensus 82 ~~Cc~Cy~LtFt~g~l-----~GKkmiVQ~tNtG~d-----------l--g~n~FDl~iP 123 (201)
T PF02015_consen 82 SWCCACYELTFTSGPL-----KGKKMIVQVTNTGGD-----------L--GSNQFDLAIP 123 (201)
T ss_dssp HHTT-EEEEEE-SSTT-----TT-EEEEEEEEE-TT-----------T--TTTEEEEE-T
T ss_pred CcccceEEEEEcCCCc-----CCCEeEEEecccCCC-----------C--CCCeEEEEeC
Confidence 6799999999987532 589999999986533 1 2589998744
No 16
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=80.93 E-value=3.1 Score=33.50 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=30.8
Q ss_pred Ccc-ceEEEEEEecCCCCeEEcccCC--C-----------ceEEecC--CC-CCc-ceEEEEEecCCcE
Q 042474 182 GAG-EVSNVWIKGSKMSKWQVMSRNW--G-----------ANWQSLT--YL-NAQ-SLSFRVQTSNGRT 232 (255)
Q Consensus 182 g~g-~I~sVev~~~gs~~W~~m~r~~--g-----------~~W~~~~--~~-~g~-pl~~RvT~~~G~~ 232 (255)
|.+ .|.+|||+..++.+|++..... . -.|++.- +. .|. -+-+|-||.+|.+
T Consensus 38 g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 38 GGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGNV 106 (131)
T ss_dssp STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-B
T ss_pred CCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccccc
Confidence 344 7999999999888899765432 1 1466542 12 332 5666778888843
No 17
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=76.87 E-value=6.1 Score=36.52 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=33.5
Q ss_pred CccceEEEEEEecCCCCeEEcccCCCc-------eEEecCC-CCC-cceEEEEEecCCcE
Q 042474 182 GAGEVSNVWIKGSKMSKWQVMSRNWGA-------NWQSLTY-LNA-QSLSFRVQTSNGRT 232 (255)
Q Consensus 182 g~g~I~sVev~~~gs~~W~~m~r~~g~-------~W~~~~~-~~g-~pl~~RvT~~~G~~ 232 (255)
|.+.|++|||+.+++.+|++..-.... .|+++-. ..| --+.+|.+|..|++
T Consensus 234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 334799999999997899986553221 5665522 233 25667778888844
No 18
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=73.88 E-value=8.9 Score=29.23 Aligned_cols=48 Identities=15% Similarity=0.323 Sum_probs=34.6
Q ss_pred eEEEEEEecCCCCeE----EcccCCCceEEecCC---------CCCcceEEEEEecCCcEEE
Q 042474 186 VSNVWIKGSKMSKWQ----VMSRNWGANWQSLTY---------LNAQSLSFRVQTSNGRTRT 234 (255)
Q Consensus 186 I~sVev~~~gs~~W~----~m~r~~g~~W~~~~~---------~~g~pl~~RvT~~~G~~i~ 234 (255)
-++|+|.++- ..|. +|+|....+|++.-+ ..|..+.+||+..+|+++.
T Consensus 16 A~~V~l~GdF-n~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDF-NNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccC-CCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 4577777543 5675 488887889987522 2567999999998888754
No 19
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.45 E-value=35 Score=31.53 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=45.0
Q ss_pred eeEEEEEEeccCCeeeEEEc-cccCeeEEEEEEecCccceEEEEEEecCCCCeEEcccCCCceEEecCCCCCcceEEEEE
Q 042474 148 PVLYRKVGCMRSGGLRFTIN-GRDYFELVLVSNVGGAGEVSNVWIKGSKMSKWQVMSRNWGANWQSLTYLNAQSLSFRVQ 226 (255)
Q Consensus 148 ~i~~r~V~C~~~g~i~~~v~-ss~~w~~v~v~n~~g~g~I~sVev~~~gs~~W~~m~r~~g~~W~~~~~~~g~pl~~RvT 226 (255)
.+.|+.|+ .+..+.|.+. +++.+ ...++.+.|.+.+|-.. - | .++|+|+
T Consensus 47 ~l~wq~l~--~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan---------------------~-G-~l~i~Ls 96 (303)
T PRK10564 47 QLTWQPVD--QSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPAN---------------------I-G-ELTLTLS 96 (303)
T ss_pred cCCceEcc--CCCceEEEeCCCCcce-----ecCCCcccEEEEEcccc---------------------c-c-cEEEEEE
Confidence 46777775 3467888886 45554 12233344555444332 1 2 7888888
Q ss_pred e-cCCcEEEEcc--ccCCCCCCCcEEecC
Q 042474 227 T-SNGRTRTAYN--VAPSNWRFGQSFKSN 252 (255)
Q Consensus 227 ~-~~G~~i~~~~--vip~~w~~G~ty~~~ 252 (255)
| ...+.+.+.+ ++-++|++-++|.+.
T Consensus 97 S~v~~~~VfaPnVlvLD~~~~~~~~y~s~ 125 (303)
T PRK10564 97 SLVNDKSVFAPNVLVLDQNMRPAAFYPSS 125 (303)
T ss_pred EEecCCcEEeceEEEEcCCCCEEEEeccc
Confidence 8 3334777777 445777777777765
No 20
>PLN00177 sulfite oxidase; Provisional
Probab=57.96 E-value=29 Score=33.21 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=17.5
Q ss_pred cceEEEEEEecCCCCeEEccc
Q 042474 184 GEVSNVWIKGSKMSKWQVMSR 204 (255)
Q Consensus 184 g~I~sVev~~~gs~~W~~m~r 204 (255)
..|++|||+..++.+|+....
T Consensus 296 ~~I~rVEVS~DgG~tW~~A~l 316 (393)
T PLN00177 296 RGIERVDISVDGGKTWVEASR 316 (393)
T ss_pred ccEEEEEEEcCCCCCceeeee
Confidence 369999999998889997643
No 21
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=57.49 E-value=19 Score=33.60 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=31.4
Q ss_pred CccceEEEEEEecCCCCeEEcccCCC------ceEEec-CCCCC-cceEEEEEecCCcE
Q 042474 182 GAGEVSNVWIKGSKMSKWQVMSRNWG------ANWQSL-TYLNA-QSLSFRVQTSNGRT 232 (255)
Q Consensus 182 g~g~I~sVev~~~gs~~W~~m~r~~g------~~W~~~-~~~~g-~pl~~RvT~~~G~~ 232 (255)
|.+.|++|||+.+++.+|+......- -.|++. .+..| --+-.|-||..|++
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 44569999999998789997654211 123332 22233 24666778887743
No 22
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=53.30 E-value=23 Score=33.47 Aligned_cols=51 Identities=18% Similarity=0.385 Sum_probs=32.3
Q ss_pred CccceEEEEEEecCCCCeEEcccC--CCc----eEEec-CCC-CC-cceEEEEEecCCcE
Q 042474 182 GAGEVSNVWIKGSKMSKWQVMSRN--WGA----NWQSL-TYL-NA-QSLSFRVQTSNGRT 232 (255)
Q Consensus 182 g~g~I~sVev~~~gs~~W~~m~r~--~g~----~W~~~-~~~-~g-~pl~~RvT~~~G~~ 232 (255)
|.+.|++|||+..++.+|++..-. .+. .|++. .+. .| --+.+|-||..|++
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 335799999999988899975432 222 36654 222 33 14566668888843
No 23
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=52.38 E-value=43 Score=31.70 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=32.3
Q ss_pred cCccceEEEEEEecCCCCeEEcccCC--C----------ceEEecCC-CC-C-cceEEEEEecCCcE
Q 042474 181 GGAGEVSNVWIKGSKMSKWQVMSRNW--G----------ANWQSLTY-LN-A-QSLSFRVQTSNGRT 232 (255)
Q Consensus 181 ~g~g~I~sVev~~~gs~~W~~m~r~~--g----------~~W~~~~~-~~-g-~pl~~RvT~~~G~~ 232 (255)
+|...|++|||+..++.+|+...... + -.|.+.-. .. | --+..|-||..|++
T Consensus 273 gg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~ 339 (365)
T cd02111 273 GGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNV 339 (365)
T ss_pred CCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCc
Confidence 33347999999999888999765432 1 13444421 22 2 14566778888854
No 24
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=49.69 E-value=10 Score=29.25 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=16.5
Q ss_pred cchHHHHHHHHHHHHHhhhh
Q 042474 3 GFFAFSFVALILTLLSIKIN 22 (255)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (255)
-||++.|+++.++||...+.
T Consensus 17 ~~FA~L~i~~FiILLIi~~~ 36 (121)
T PF10669_consen 17 MFFAFLFIVVFIILLIITKS 36 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999898888763
No 25
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=44.79 E-value=12 Score=23.75 Aligned_cols=11 Identities=36% Similarity=0.957 Sum_probs=9.4
Q ss_pred cccCCCCCCCc
Q 042474 237 NVAPSNWRFGQ 247 (255)
Q Consensus 237 ~vip~~w~~G~ 247 (255)
.+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999985
No 26
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=39.86 E-value=88 Score=25.61 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=23.7
Q ss_pred CeeeeEEEEEEeccCCeeeEEEc----cccCeeEEEEEEecCccceEEEE
Q 042474 145 GIVPVLYRKVGCMRSGGLRFTIN----GRDYFELVLVSNVGGAGEVSNVW 190 (255)
Q Consensus 145 G~v~i~~r~V~C~~~g~i~~~v~----ss~~w~~v~v~n~~g~g~I~sVe 190 (255)
|-++|+-|+-| .-++..+.+= -+|+|+.|++ +.+|+ ++.-|.
T Consensus 58 GffPVq~Rfsp--~~~~~~l~vCSpG~~sP~W~~Vl~-~~gG~-~~a~v~ 103 (144)
T PRK13701 58 GFFPVQVRFTP--AHERFHLALCSPGDVSPVWVLVLV-NAGGE-PFAVVQ 103 (144)
T ss_pred CeeeEEEEecC--CCCCeEEEEeCCCCCCcceEEEEE-cCCCc-EEEEEE
Confidence 55555555544 2235555552 2799999888 55554 444333
No 27
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=39.76 E-value=93 Score=29.70 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=17.3
Q ss_pred ceEEEEEEecCCCCeEEccc
Q 042474 185 EVSNVWIKGSKMSKWQVMSR 204 (255)
Q Consensus 185 ~I~sVev~~~gs~~W~~m~r 204 (255)
.|++|||+..++.+|+....
T Consensus 301 ~I~rVeVS~DgG~tW~~A~L 320 (386)
T cd02112 301 RVTRVEVSLDDGKSWKLASI 320 (386)
T ss_pred cEEEEEEEcCCCCCceeCCC
Confidence 69999999998889997644
No 28
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=37.87 E-value=1.2e+02 Score=22.37 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=21.3
Q ss_pred EEcccCC-CceEEec--CCCCCcceEEEEEecCCcEE
Q 042474 200 QVMSRNW-GANWQSL--TYLNAQSLSFRVQTSNGRTR 233 (255)
Q Consensus 200 ~~m~r~~-g~~W~~~--~~~~g~pl~~RvT~~~G~~i 233 (255)
.+|.|.. ...|... ....+..+.+|++..+|...
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677765 6778753 23333468999987555554
No 29
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=36.82 E-value=2.2e+02 Score=22.80 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=39.7
Q ss_pred CeeeEEEc------cccCeeEEEEEEecCccceEEEEEEec---C-------CCCeEEcccCCC--ceEEecCCCCCcce
Q 042474 160 GGLRFTIN------GRDYFELVLVSNVGGAGEVSNVWIKGS---K-------MSKWQVMSRNWG--ANWQSLTYLNAQSL 221 (255)
Q Consensus 160 g~i~~~v~------ss~~w~~v~v~n~~g~g~I~sVev~~~---g-------s~~W~~m~r~~g--~~W~~~~~~~g~pl 221 (255)
..+.+.+. +.+||.-+.|+|.++. ..++|+|... + ..+.-.+.+..- ..+-....|.+.-|
T Consensus 34 p~l~v~~~~~~r~~~gqyyVpF~V~N~gg~-TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g~L 112 (122)
T TIGR02588 34 AVLEVAPAEVERMQTGQYYVPFAIHNLGGT-TAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNGQL 112 (122)
T ss_pred CeEEEeehheeEEeCCEEEEEEEEEeCCCc-EEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccCeE
Confidence 35655553 3469999999998764 7899999863 1 012223333221 23444433332378
Q ss_pred EEEEEec
Q 042474 222 SFRVQTS 228 (255)
Q Consensus 222 ~~RvT~~ 228 (255)
.||+.+.
T Consensus 113 ~irv~gY 119 (122)
T TIGR02588 113 RLRVAGY 119 (122)
T ss_pred EEEEEec
Confidence 8888763
No 30
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=34.85 E-value=36 Score=27.64 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=33.4
Q ss_pred eEEecCCCCCcceEEEEEecCCcEEEEccccCCCCCCCcEEecCCCC
Q 042474 209 NWQSLTYLNAQSLSFRVQTSNGRTRTAYNVAPSNWRFGQSFKSNVQF 255 (255)
Q Consensus 209 ~W~~~~~~~g~pl~~RvT~~~G~~i~~~~vip~~w~~G~ty~~~vqf 255 (255)
.|+.+ |+.| +..|+++.--++++...-.|.-.-+|.+|+-.+.|
T Consensus 26 e~q~~-pP~G--~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F 69 (161)
T KOG0427|consen 26 EWQNN-PPTG--FKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEF 69 (161)
T ss_pred HHhcC-CCCc--ceeecccchheeEEEEecCCceeecCcEEEEEEec
Confidence 35543 4555 78889998899999888888888888888876655
No 31
>PRK13697 cytochrome c6; Provisional
Probab=34.45 E-value=8 Score=29.45 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=11.4
Q ss_pred CCcchHHHHHHHHHHHHHh
Q 042474 1 MEGFFAFSFVALILTLLSI 19 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (255)
||+|+.+.++++++++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~ 19 (111)
T PRK13697 1 MKKILSLVLLGLLLLTFAF 19 (111)
T ss_pred ChhHHHHHHHHHHHHHHHh
Confidence 8887766655555444443
No 32
>PLN02252 nitrate reductase [NADPH]
Probab=33.13 E-value=1.2e+02 Score=32.24 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=33.1
Q ss_pred EecCccceEEEEEEecCCCCeEEcccCC-------Cc-----eEEecC---CCCC-cceEEEEEecCCcE
Q 042474 179 NVGGAGEVSNVWIKGSKMSKWQVMSRNW-------GA-----NWQSLT---YLNA-QSLSFRVQTSNGRT 232 (255)
Q Consensus 179 n~~g~g~I~sVev~~~gs~~W~~m~r~~-------g~-----~W~~~~---~~~g-~pl~~RvT~~~G~~ 232 (255)
+.+|...|++|||+..++.+|+...... |. .|.++- .+.| .-+-+|-+|..|++
T Consensus 367 ~sggg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~ 436 (888)
T PLN02252 367 YSGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESMNT 436 (888)
T ss_pred ECCCCCceEEEEEEcCCCCcceeCccCCCCCccccCCccEEEEEEEeEecccCCCceEEEEEEEcCCCCc
Confidence 3444347999999999888999866532 11 244432 2233 25666667777743
No 33
>KOG4192 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=64 Score=25.87 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=52.9
Q ss_pred CCC-CCCCceeeChHHHHhhhhccCCeeeeEEE-------EEEeccCCeeeEEEc-cccCeeEEEEEEecCccceEEEEE
Q 042474 121 WCN-PPRAHFDMSQPAFESIAIYRAGIVPVLYR-------KVGCMRSGGLRFTIN-GRDYFELVLVSNVGGAGEVSNVWI 191 (255)
Q Consensus 121 ~C~-~~~~~~DLs~~AF~~la~~~~G~v~i~~r-------~V~C~~~g~i~~~v~-ss~~w~~v~v~n~~g~g~I~sVev 191 (255)
-|. ...-||-+...-|..|-+ -....+|+ -+.|..-|--+|... |++|=.+|.+.=..+ |.+++|++
T Consensus 36 ics~k~~~hfivpas~f~ll~g---~efitty~~gth~aqhtfck~cGV~sf~~~rs~p~~~~i~phCld~-gTlr~v~~ 111 (134)
T KOG4192|consen 36 ICSKKQNRHFIVPASRFVLLVG---AEFITTYTFGTHQAQHTFCKRCGVQSFYSPRSNPYGKGIAPHCLDE-GTLRSVVW 111 (134)
T ss_pred hhhhccceEEEEeccceEEEeC---cceEEEEEeccchhheeeeccccceeccccccCCCceeecceeecC-CceeEEEE
Confidence 364 236788888888877743 11223333 356665554456665 899988888866554 57999999
Q ss_pred EecCCCCeEEccc
Q 042474 192 KGSKMSKWQVMSR 204 (255)
Q Consensus 192 ~~~gs~~W~~m~r 204 (255)
+.-++.+|..+..
T Consensus 112 ~~fnGqdwe~~~e 124 (134)
T KOG4192|consen 112 EEFNGQDWEATME 124 (134)
T ss_pred EEecCcchhHhhh
Confidence 9977677876543
No 34
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=32.49 E-value=1.7e+02 Score=20.89 Aligned_cols=49 Identities=14% Similarity=0.346 Sum_probs=31.9
Q ss_pred eEEEEEEecCCCCeE---EcccCCCceEEecCCCCCcceEEEEEecCCcEEEEcc
Q 042474 186 VSNVWIKGSKMSKWQ---VMSRNWGANWQSLTYLNAQSLSFRVQTSNGRTRTAYN 237 (255)
Q Consensus 186 I~sVev~~~gs~~W~---~m~r~~g~~W~~~~~~~g~pl~~RvT~~~G~~i~~~~ 237 (255)
.++|+|.++= ..|. +|.|..+. |...-.|..+.+.+|+.. ||+++...+
T Consensus 12 a~~V~v~G~F-~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~V-dg~w~~d~~ 63 (79)
T cd02859 12 GKEVYVTGSF-DNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFIV-DGEWRHSPD 63 (79)
T ss_pred CcEEEEEEEc-CCCCccccceECCCC-cEEEEEcCCCCEEEEEEE-CCEEEeCCC
Confidence 5788898754 4676 48887655 776543332367777764 678876543
No 35
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.11 E-value=1.8e+02 Score=21.46 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=22.0
Q ss_pred EEcccCCCceEEec--CCCCCcceEEEEEecCCcE
Q 042474 200 QVMSRNWGANWQSL--TYLNAQSLSFRVQTSNGRT 232 (255)
Q Consensus 200 ~~m~r~~g~~W~~~--~~~~g~pl~~RvT~~~G~~ 232 (255)
.+|.|..+.+|.+. +.+.|.-+.+||...+++.
T Consensus 39 ~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~~~ 73 (100)
T cd02860 39 VQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKGET 73 (100)
T ss_pred EeeecCCCCEEEEEeCCccCCcEEEEEEEEeceEE
Confidence 36777778888764 3345567888887764444
No 36
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=28.56 E-value=1.2e+02 Score=21.62 Aligned_cols=44 Identities=20% Similarity=0.411 Sum_probs=27.9
Q ss_pred EEEEEEecCCCCe--EEcccCCCceEEecCCC-CCcceEEEEEecCCcEE
Q 042474 187 SNVWIKGSKMSKW--QVMSRNWGANWQSLTYL-NAQSLSFRVQTSNGRTR 233 (255)
Q Consensus 187 ~sVev~~~gs~~W--~~m~r~~g~~W~~~~~~-~g~pl~~RvT~~~G~~i 233 (255)
++|+|.++= ..| .+|+|.....|++.-++ .| .+..|+.- +|++.
T Consensus 14 ~~V~v~G~f-n~W~~~~m~~~~~G~w~~~~~l~~G-~y~Ykf~v-dg~~~ 60 (82)
T cd02861 14 DSVYLAGSF-NNWNAIPMEREGDGLWVVTVELRPG-RYEYKFVV-DGEWV 60 (82)
T ss_pred CEEEEEeEC-CCCCcccCEECCCCcEEEEEeCCCC-cEEEEEEE-CCEEe
Confidence 678888753 467 46888765788775443 34 45666653 56654
No 37
>PRK10301 hypothetical protein; Provisional
Probab=28.43 E-value=78 Score=25.11 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=22.2
Q ss_pred hccCCeeeeEEEEEEecc---CCeeeEEEc
Q 042474 141 IYRAGIVPVLYRKVGCMR---SGGLRFTIN 167 (255)
Q Consensus 141 ~~~~G~v~i~~r~V~C~~---~g~i~~~v~ 167 (255)
.+..|.+.|+||-|+=+. .|.++|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKTKGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCccCCeEEEEEC
Confidence 357899999999999864 578888875
No 38
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=27.56 E-value=55 Score=23.88 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=17.9
Q ss_pred CCcchHHHHHHHHHHHHHhhhhhcCCCeeEEEEEEecCCCC
Q 042474 1 MEGFFAFSFVALILTLLSIKINAASAAWMQAHATFYGGSDA 41 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~aT~Yg~~~~ 41 (255)
|||.+++..+++++++-...... .-..+-+||+.|+
T Consensus 1 ~kn~~l~~~vv~l~~~pl~~~~~-----~~~~~~~~GGaD~ 36 (74)
T PF02553_consen 1 MKNLLLLLLVVALAVVPLFLYPS-----SGNDAEEFGGADD 36 (74)
T ss_pred CceeHHHHHHHHHHHHHHHHhcc-----cccccccccCccH
Confidence 67777666654443332221111 1234567887664
No 39
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=27.20 E-value=83 Score=25.40 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.3
Q ss_pred hccCCeeeeEEEEEEecc---CCeeeEEEc
Q 042474 141 IYRAGIVPVLYRKVGCMR---SGGLRFTIN 167 (255)
Q Consensus 141 ~~~~G~v~i~~r~V~C~~---~g~i~~~v~ 167 (255)
++..|..-++||.|+-+. .|.+.|.|+
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~ 125 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVG 125 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEec
Confidence 468999999999999975 678999886
No 40
>PRK15194 type-1 fimbrial protein subunit A; Provisional
Probab=26.85 E-value=73 Score=26.67 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCcchHHHHHHHHHHHHHhhhhhc--CCCeeEEEEEEecCCCCCCCCccccCCC
Q 042474 1 MEGFFAFSFVALILTLLSIKINAA--SAAWMQAHATFYGGSDASETMGGACGYG 52 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~aT~Yg~~~~~~~~~GaCGy~ 52 (255)
||+.++.++++.++++.+..++++ .-.-..|+.+|.|.- ....|.-.
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~G~I~f~G~I-----~~~tC~v~ 49 (185)
T PRK15194 1 MKLRFISSAIASLLFVAGAAYAADPTPVSVDGGTIHFEGEL-----VNAACSVN 49 (185)
T ss_pred CchHHHHHHHHHHHHHhhhhhhccccceecCceEEEEEEEE-----Eeccceee
Confidence 676666555444433222222221 011246999999853 34689654
No 41
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=26.84 E-value=1.8e+02 Score=20.41 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=31.1
Q ss_pred eEEEEEEecCCCCe----EEcc-cCCCceEEecC--CCC-C-cceEEEEEecCCcEEEE
Q 042474 186 VSNVWIKGSKMSKW----QVMS-RNWGANWQSLT--YLN-A-QSLSFRVQTSNGRTRTA 235 (255)
Q Consensus 186 I~sVev~~~gs~~W----~~m~-r~~g~~W~~~~--~~~-g-~pl~~RvT~~~G~~i~~ 235 (255)
.++|+|.......| .+|+ +..+.+|++.- .+. | .-+.+||+..+|++...
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~~ 80 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPEV 80 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEEE
Confidence 45666665442223 4677 57788997642 344 3 38999999988755443
No 42
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=26.59 E-value=68 Score=20.14 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=6.8
Q ss_pred CCcchHHHHHHHHHHH
Q 042474 1 MEGFFAFSFVALILTL 16 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (255)
||-+ ++.|+++++.|
T Consensus 1 Mk~l-~~a~~l~lLal 15 (36)
T PF08194_consen 1 MKCL-SLAFALLLLAL 15 (36)
T ss_pred Ccee-HHHHHHHHHHH
Confidence 5544 33455444443
No 43
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=26.43 E-value=98 Score=23.63 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=14.4
Q ss_pred EEecCCCCCcceEEEEEecCCcEEEE
Q 042474 210 WQSLTYLNAQSLSFRVQTSNGRTRTA 235 (255)
Q Consensus 210 W~~~~~~~g~pl~~RvT~~~G~~i~~ 235 (255)
+.+...-.| +|+++.+|++|+.-.+
T Consensus 72 F~~~~~~~g-~l~v~~~Dn~G~~~~~ 96 (100)
T PF08770_consen 72 FSFKGKKSG-TLTVTWTDNKGNSFSA 96 (100)
T ss_dssp EEEEESSSE-EEEEEEEETTS-EEEE
T ss_pred EEEecCCCc-EEEEEEEECCCCEEEE
Confidence 333333344 7888888888876544
No 44
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=23.85 E-value=64 Score=23.08 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=7.6
Q ss_pred CCcchHHHHHHHHHH
Q 042474 1 MEGFFAFSFVALILT 15 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (255)
|.+|.|.-+|+|.|+
T Consensus 1 mnn~Si~VLlaLvLI 15 (71)
T PF04202_consen 1 MNNLSIAVLLALVLI 15 (71)
T ss_pred CCchhHHHHHHHHHH
Confidence 666655544443333
No 45
>PF15284 PAGK: Phage-encoded virulence factor
Probab=23.05 E-value=54 Score=23.00 Aligned_cols=13 Identities=23% Similarity=-0.023 Sum_probs=5.3
Q ss_pred HHHHHHhhhhhcC
Q 042474 13 ILTLLSIKINAAS 25 (255)
Q Consensus 13 ~~~~~~~~~~~~~ 25 (255)
...++++++.+++
T Consensus 16 sA~~FSasamAa~ 28 (61)
T PF15284_consen 16 SAAGFSASAMAAD 28 (61)
T ss_pred HHhhhhHHHHHHh
Confidence 3333444444433
No 46
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=22.21 E-value=51 Score=17.54 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=5.6
Q ss_pred CCcchHHHHHHHH
Q 042474 1 MEGFFAFSFVALI 13 (255)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (255)
|-++.|+..++|+
T Consensus 1 MMk~vIIlvvLLl 13 (19)
T PF13956_consen 1 MMKLVIILVVLLL 13 (19)
T ss_pred CceehHHHHHHHh
Confidence 3344444444433
No 47
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=22.07 E-value=76 Score=23.71 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=18.6
Q ss_pred ccCCeeeeEEEEEEecc---CCeeeEEEc
Q 042474 142 YRAGIVPVLYRKVGCMR---SGGLRFTIN 167 (255)
Q Consensus 142 ~~~G~v~i~~r~V~C~~---~g~i~~~v~ 167 (255)
+..|.+.|+||-|+=+- .|.+.|.|+
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCCEEEEEEC
Confidence 67899999999999653 456777764
No 48
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.73 E-value=72 Score=26.37 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=16.1
Q ss_pred CCcchHHHHHHHHHHHHHhhhhh
Q 042474 1 MEGFFAFSFVALILTLLSIKINA 23 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (255)
|++|..+..|+++++|.+...++
T Consensus 1 M~rf~~i~lL~~A~lls~plva~ 23 (166)
T COG3495 1 MNRFTSITLLAAALLLSAPLVAA 23 (166)
T ss_pred CchhHHHHHHHHHHHhcchhhhc
Confidence 89999988888776654444433
No 49
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=20.37 E-value=80 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=11.1
Q ss_pred CCcchHHHHHHHHHHHHHh
Q 042474 1 MEGFFAFSFVALILTLLSI 19 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (255)
||+|+ ++-+++.++|+..
T Consensus 1 M~k~l-~sal~~~~~L~~G 18 (96)
T PF11839_consen 1 MKKLL-LSALALAALLLAG 18 (96)
T ss_pred CchHH-HHHHHHHHHHHhH
Confidence 88888 5555555444444
No 50
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.12 E-value=44 Score=26.51 Aligned_cols=6 Identities=17% Similarity=0.407 Sum_probs=2.3
Q ss_pred EEEEEe
Q 042474 31 AHATFY 36 (255)
Q Consensus 31 g~aT~Y 36 (255)
|....|
T Consensus 30 G~~P~~ 35 (130)
T PF12273_consen 30 GLQPIY 35 (130)
T ss_pred CCCCcC
Confidence 443333
Done!