BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042476
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 173/417 (41%), Gaps = 67/417 (16%)
Query: 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
L+LS N+ G +P L LDLS+N SG I+ +C + K+ + L L
Sbjct: 345 LDLSFNEFSGELP----ESLTNLSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQ 399
Query: 62 KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT---------------------- 99
N F+G IP N L L+L NY +G +P S+G+
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 100 --XXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNL 157
G P L NC++L + + N G IP W+G R L IL L
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKL 518
Query: 158 RSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVT 217
+N F+G++P +L L LD+ N +GTIP + F I ++ Y ++
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKRYVYIK 576
Query: 218 RGNIVFEDASVVTKGLLVEYNSI----LNLVRS--------------------------- 246
+ E G L+E+ I LN + +
Sbjct: 577 NDGMKKE---CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 247 IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRI 306
+D+S N SG IP ++ ++ L LNL HN G IP+ +G++R + LD S+N+L GRI
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 307 PQXXXXXXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPDCTEKNT 362
PQ +LSG IP Q ++F + F N LCG PLP C N
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 750
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 153/320 (47%), Gaps = 30/320 (9%)
Query: 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
LN+S+NQ G IP PLP + ++ L L+ N +G I + + + L LS
Sbjct: 249 LNISSNQFVGPIP-----PLPLKSLQY--LSLAENKFTGEIPDFLSGACD--TLTGLDLS 299
Query: 62 KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPI-SIGTXXXXXXXXXXXXXXAGIFPVS 120
N+F G +P + + L+ L L N F+G LP+ ++ +G P S
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 121 LKNCS-SLISLDIGENDFFGSI-PTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI 178
L N S SL++LD+ N+F G I P L L L++N F G +P L + + L
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 179 LDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVT-KGLLVEY 237
L ++ N LSGTIP + + + + + ++ + G I E V T + L++++
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDL-------KLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 238 NSILNLVRS----------IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIG 287
N + + S I +S N +GEIP + LE L L LS+N F G IP +G
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 288 NMRSIESLDFSTNRLFGRIP 307
+ RS+ LD +TN G IP
Sbjct: 533 DCRSLIWLDLNTNLFNGTIP 552
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 150/355 (42%), Gaps = 77/355 (21%)
Query: 30 LLDLSNNALSGS-------------IIHLICNGDNKS--VIIS-------LKLSKNYFSG 67
+LDLS N++SG+ + HL +G+ S V +S L +S N FS
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 211
Query: 68 DIP---DCWMNWPHLQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAG-IFPVSLKN 123
IP DC LQ L++ N +G+ +I T G I P+ LK+
Sbjct: 212 GIPFLGDC----SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS 267
Query: 124 ----------------------CSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK 161
C +L LD+ N F+G++P + G L L L SN
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNN 326
Query: 162 FNGSLPVQ-LCHLTFLRILDVAHNNLSGTIPRCINNFTA---MATINSSNQKNAIYYFVT 217
F+G LP+ L + L++LD++ N SG +P + N +A ++S+N I +
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 218 RGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF 277
+ + N ++ + + N F+G+IP L+N L +L+LS N+
Sbjct: 387 Q--------------------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 278 FVGKIPENIGNMRSIESLDFSTNRLFGRIPQXXXXXXXXXXXXXXXXDLSGQIPS 332
G IP ++G++ + L N L G IPQ DL+G+IPS
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 14/195 (7%)
Query: 122 KNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNK--FNGSLPVQLCHLTFLRI 178
K +SL SLD+ N G + T L LN+ SN F G + L L L +
Sbjct: 94 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEV 152
Query: 179 LDVAHNNLSGT------IPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKG 232
LD++ N++SG + +A S N+ + N+ F D S
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAI--SGNKISGDVDVSRCVNLEFLDVSSNNFS 210
Query: 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI 292
+ + + ++ +DIS N SG+ ++ L+ LN+S N FVG IP ++S+
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 268
Query: 293 ESLDFSTNRLFGRIP 307
+ L + N+ G IP
Sbjct: 269 QYLSLAENKFTGEIP 283
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 173/417 (41%), Gaps = 67/417 (16%)
Query: 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
L+LS N+ G +P L LDLS+N SG I+ +C + K+ + L L
Sbjct: 348 LDLSFNEFSGELP----ESLTNLSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQ 402
Query: 62 KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT---------------------- 99
N F+G IP N L L+L NY +G +P S+G+
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 100 --XXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNL 157
G P L NC++L + + N G IP W+G R L IL L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKL 521
Query: 158 RSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVT 217
+N F+G++P +L L LD+ N +GTIP + F I ++ Y ++
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKRYVYIK 579
Query: 218 RGNIVFEDASVVTKGLLVEYNSI----LNLVRS--------------------------- 246
+ E G L+E+ I LN + +
Sbjct: 580 NDGMKKE---CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 247 IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRI 306
+D+S N SG IP ++ ++ L LNL HN G IP+ +G++R + LD S+N+L GRI
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 307 PQXXXXXXXXXXXXXXXXDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPDCTEKNT 362
PQ +LSG IP Q ++F + F N LCG PLP C N
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 153/320 (47%), Gaps = 30/320 (9%)
Query: 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLS 61
LN+S+NQ G IP PLP + ++ L L+ N +G I + + + L LS
Sbjct: 252 LNISSNQFVGPIP-----PLPLKSLQY--LSLAENKFTGEIPDFLSGACD--TLTGLDLS 302
Query: 62 KNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPI-SIGTXXXXXXXXXXXXXXAGIFPVS 120
N+F G +P + + L+ L L N F+G LP+ ++ +G P S
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 121 LKNCS-SLISLDIGENDFFGSI-PTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI 178
L N S SL++LD+ N+F G I P L L L++N F G +P L + + L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 179 LDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVT-KGLLVEY 237
L ++ N LSGTIP + + + + + ++ + G I E V T + L++++
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDL-------KLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 238 NSILNLVRS----------IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIG 287
N + + S I +S N +GEIP + LE L L LS+N F G IP +G
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 288 NMRSIESLDFSTNRLFGRIP 307
+ RS+ LD +TN G IP
Sbjct: 536 DCRSLIWLDLNTNLFNGTIP 555
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 150/355 (42%), Gaps = 77/355 (21%)
Query: 30 LLDLSNNALSGS-------------IIHLICNGDNKS--VIIS-------LKLSKNYFSG 67
+LDLS N++SG+ + HL +G+ S V +S L +S N FS
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 214
Query: 68 DIP---DCWMNWPHLQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAG-IFPVSLKN 123
IP DC LQ L++ N +G+ +I T G I P+ LK+
Sbjct: 215 GIPFLGDC----SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS 270
Query: 124 ----------------------CSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK 161
C +L LD+ N F+G++P + G L L L SN
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESLALSSNN 329
Query: 162 FNGSLPVQ-LCHLTFLRILDVAHNNLSGTIPRCINNFTA---MATINSSNQKNAIYYFVT 217
F+G LP+ L + L++LD++ N SG +P + N +A ++S+N I +
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 218 RGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF 277
+ + N ++ + + N F+G+IP L+N L +L+LS N+
Sbjct: 390 Q--------------------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 278 FVGKIPENIGNMRSIESLDFSTNRLFGRIPQXXXXXXXXXXXXXXXXDLSGQIPS 332
G IP ++G++ + L N L G IPQ DL+G+IPS
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 122 KNCSSLISLDIGENDFFGSIPTWVG-ERFPRLLILNLRSNK--FNGSLPVQLCHLTFLRI 178
K +SL SLD+ N G + T L LN+ SN F G + L L L +
Sbjct: 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEV 155
Query: 179 LDVAHNNLSGT------IPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKG 232
LD++ N++SG + +A S N+ + N+ F D S
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAI--SGNKISGDVDVSRCVNLEFLDVSSNNFS 213
Query: 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI 292
+ + + ++ +DIS N SG+ ++ L+ LN+S N FVG IP ++S+
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 271
Query: 293 ESLDFSTNRLFGRIPQ 308
+ L + N+ G IP
Sbjct: 272 QYLSLAENKFTGEIPD 287
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 137/328 (41%), Gaps = 65/328 (19%)
Query: 43 IHLICNGDNKSVIIS------LKLSKNYFSGDIPDCWMNWPHLQVLNLDD-NYFTGNLPI 95
+ ++C+ D ++ ++ L L K Y IP N P+L L + N G +P
Sbjct: 39 LGVLCDTDTQTYRVNNLDLSGLNLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 96 SIGTXXXXXXXXXXXXXXAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLIL 155
+I +G P L +L++LD N G++P + P L+ +
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGI 154
Query: 156 NLRSNKFNGSLPVQLCHLTFL-RILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYY 214
N+ +G++P + L + ++ N L+G IP N N +
Sbjct: 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------NLAFV 202
Query: 215 FVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS---GEIPMQLTNLEGLQTL 271
++R N++ DASV+ + S N + I ++KN+ + G++ + NL GL
Sbjct: 203 DLSR-NMLEGDASVL-------FGSDKN-TQKIHLAKNSLAFDLGKVGLS-KNLNGL--- 249
Query: 272 NLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQXXXXXXXXXXXXXXXXDLSGQIP 331
+L +N G +P+ + ++ + SL+ S N L G IPQ
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----------------------- 286
Query: 332 SSTQLQSFGASCFSGND-LCGAPLPDCT 358
LQ F S ++ N LCG+PLP CT
Sbjct: 287 -GGNLQRFDVSAYANNKCLCGSPLPACT 313
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 23/185 (12%)
Query: 126 SLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN 185
S+ SL++ E+ F I + + F +L L+L + G LP + L L+ L ++
Sbjct: 252 SVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLS--- 306
Query: 186 LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVR 245
+N+F + I+++N + + ++ RGN+ V G L + ++ +
Sbjct: 307 --------VNHFDQLCQISAANFPSLTHLYI-RGNVKKLHLGV---GCLEKLGNL----Q 350
Query: 246 SIDISKNNFSGE--IPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF 303
++D+S N+ +QL NL LQTLNLSHN +G + +E LD + RL
Sbjct: 351 TLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH 410
Query: 304 GRIPQ 308
PQ
Sbjct: 411 INAPQ 415
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 264 NLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRL 302
+L+ L+ LN++HN K+PE N+ ++E LD S+N++
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 264 NLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRL 302
+L+ L+ LN++HN K+PE N+ ++E LD S+N++
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 264 NLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRL 302
+L+ L+ LN++HN K+PE N+ ++E LD S+N++
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 264 NLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRL 302
+L+ L+ LN++HN K+PE N+ ++E LD S+N++
Sbjct: 123 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 264 NLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRL 302
+L+ L+ LN++HN K+PE N+ ++E LD S+N++
Sbjct: 124 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 264 NLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRL 302
+L+ L+ LN++HN K+PE N+ ++E LD S+N++
Sbjct: 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 247 IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRI 306
+D+S+ P +L LQ LN+SHN F + S++ LD+S N +
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 307 PQ 308
Q
Sbjct: 559 KQ 560
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 264 NLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRL 302
+L+ L+ LN++HN K+PE N+ ++E LD S+N++
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 247 IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRI 306
+D+S+ P +L LQ LN+SHN F + S++ LD+S N +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 307 PQ 308
Q
Sbjct: 535 KQ 536
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 264 NLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRL 302
+L+ L+ LN++HN K+PE N+ ++E LD S+N++
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 44/221 (19%)
Query: 125 SSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN--KFNGSLPVQLCHLTFLRILDVA 182
SS L++ E++ S+P V ++ +L L+L SN F G T L+ LD++
Sbjct: 28 SSATRLEL-ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 183 HNNLSGTIPRCINNFTAMATI-----NSSN--QKNAIYYFVTRGNIVFEDASVVTKGLLV 235
N G I +NF + + SN Q + F++ N+++ D S V
Sbjct: 87 FN---GVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--V 140
Query: 236 EYNSILNLVRSIDISK-------NNFSGEIPMQLTNL---------------------EG 267
+N I N + S+++ K NF +I +L NL
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200
Query: 268 LQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQ 308
LQ LN+SHN F + S++ LD+S N + Q
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 142 PTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTF-LRILDVAHNNLSGTIPRCINNFTAM 200
P + + L ILNL SN F+ +PV++ F L+I+D+ NNL+ NN ++
Sbjct: 533 PIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 591
Query: 201 ATINSSNQKNAI 212
++N QKN I
Sbjct: 592 KSLNL--QKNLI 601
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 142 PTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTF-LRILDVAHNNLSGTIPRCINNFTAM 200
P + + L ILNL SN F+ +PV++ F L+I+D+ NNL+ NN ++
Sbjct: 528 PIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Query: 201 ATINSSNQKNAI 212
++N QKN I
Sbjct: 587 KSLNL--QKNLI 596
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 142 PTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTF-LRILDVAHNNLSGTIPRCINNFTAM 200
P + + L ILNL SN F+ +PV++ F L+I+D+ NNL+ NN ++
Sbjct: 538 PIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 596
Query: 201 ATINSSNQKNAI 212
++N QKN I
Sbjct: 597 KSLNL--QKNLI 606
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 195 NNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNL--VRSIDISKN 252
N F + I++SN ++ + +GN TK L + + NL +R +D+S +
Sbjct: 311 NKFENLCQISASNFP-SLTHLSIKGN---------TKRLELGTGCLENLENLRELDLSHD 360
Query: 253 NF--SGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQ 308
+ S +QL NL LQ+LNLS+N + E +E LD + RL + Q
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 29/116 (25%)
Query: 72 CWMNWPHLQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVSLKNCSSLISLD 131
C WP LQ L L N+ G ++LKN L SLD
Sbjct: 356 CKGAWPSLQTLVLSQNHLRS-------------------MQKTGEILLTLKN---LTSLD 393
Query: 132 IGENDFFGSIPTWVGERFP-RLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186
I N F P ++P ++ LNL S G V+ C L +LDV++NNL
Sbjct: 394 ISRNTFH---PMPDSCQWPEKMRFLNLSST---GIRVVKTCIPQTLEVLDVSNNNL 443
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 50/145 (34%), Gaps = 23/145 (15%)
Query: 82 LNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVSL--KNCSSLISLDIGENDFFG 139
LN N FT ++ T F V+L KN SSL +LD+ N
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 140 SIPTWVGERFPRLLILNLRSNKFNGS---------------------LPVQLCHLTFLRI 178
+L+LNL SN GS +P + HL L+
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQE 477
Query: 179 LDVAHNNLSGTIPRCINNFTAMATI 203
L+VA N L + T++ I
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYI 502
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 247 IDISKNNFSGEIPMQLTNLEGLQTLNLSHN----FFVGKIPENIGNMRSIESLDFSTNRL 302
++ ++N F+ + + L+ LQTL L N FF K+ NM S+E+LD S N L
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSL 415
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 29/116 (25%)
Query: 72 CWMNWPHLQVLNLDDNYFTGNLPISIGTXXXXXXXXXXXXXXAGIFPVSLKNCSSLISLD 131
C WP LQ L L N+ G ++LKN L SLD
Sbjct: 382 CKGAWPSLQTLVLSQNHLRS-------------------MQKTGEILLTLKN---LTSLD 419
Query: 132 IGENDFFGSIPTWVGERFP-RLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186
I N F P ++P ++ LNL S G V+ C L +LDV++NNL
Sbjct: 420 ISRNTFH---PMPDSCQWPEKMRFLNLSST---GIRVVKTCIPQTLEVLDVSNNNL 469
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 231 KGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR 290
KGL V I V + + N F+ +P +L+N + L ++LS+N ++ NM
Sbjct: 20 KGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 291 SIESLDFSTNRL 302
+ +L S NRL
Sbjct: 79 QLLTLILSYNRL 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,400,135
Number of Sequences: 62578
Number of extensions: 496665
Number of successful extensions: 1071
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 867
Number of HSP's gapped (non-prelim): 114
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)