Query 042476
Match_columns 433
No_of_seqs 302 out of 3904
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9E-39 1.9E-43 341.8 23.3 343 1-352 240-610 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.3E-37 5E-42 331.0 22.4 342 1-352 216-586 (968)
3 KOG4194 Membrane glycoprotein 100.0 9E-34 2E-38 263.2 2.2 348 1-352 82-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.4E-33 5.2E-38 260.4 1.4 280 27-331 174-456 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2E-30 4.4E-35 242.9 -6.0 316 2-353 12-355 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 4.9E-30 1.1E-34 240.3 -4.4 317 1-353 59-379 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 5.6E-29 1.2E-33 222.0 -9.9 329 2-350 119-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 3E-25 6.4E-30 198.3 -9.1 262 28-349 47-309 (565)
9 PLN03210 Resistant to P. syrin 99.9 1E-20 2.2E-25 203.8 22.1 292 27-347 590-903 (1153)
10 PLN03210 Resistant to P. syrin 99.9 2.3E-20 4.9E-25 201.0 23.9 266 25-326 610-905 (1153)
11 PRK15387 E3 ubiquitin-protein 99.9 6.1E-21 1.3E-25 191.9 16.6 259 1-332 205-463 (788)
12 KOG4237 Extracellular matrix p 99.8 6.6E-23 1.4E-27 183.0 -5.5 289 35-330 55-362 (498)
13 PRK15387 E3 ubiquitin-protein 99.8 1.2E-19 2.5E-24 182.7 16.2 260 26-353 201-461 (788)
14 PRK15370 E3 ubiquitin-protein 99.8 4E-20 8.7E-25 187.1 11.7 246 28-328 180-429 (754)
15 KOG4237 Extracellular matrix p 99.8 1.3E-22 2.8E-27 181.2 -5.7 279 68-349 60-358 (498)
16 KOG0618 Serine/threonine phosp 99.8 1.5E-21 3.2E-26 191.4 -3.3 297 31-347 183-486 (1081)
17 PRK15370 E3 ubiquitin-protein 99.8 2.9E-19 6.4E-24 180.9 12.5 246 53-350 178-428 (754)
18 KOG0618 Serine/threonine phosp 99.8 3.9E-21 8.4E-26 188.5 -3.7 269 26-326 219-488 (1081)
19 cd00116 LRR_RI Leucine-rich re 99.8 4E-21 8.6E-26 180.2 -5.5 183 1-187 2-206 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.1E-19 6.7E-24 167.4 -2.1 255 30-328 2-292 (319)
21 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.4E-23 138.2 -4.2 162 99-311 31-193 (264)
22 KOG0617 Ras suppressor protein 99.7 1.1E-18 2.5E-23 139.0 -5.0 163 75-288 31-194 (264)
23 PLN03150 hypothetical protein; 99.6 8.8E-15 1.9E-19 147.7 9.6 116 243-358 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 9.2E-14 2E-18 130.5 -3.7 196 75-325 73-271 (722)
25 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.7E-16 119.3 6.9 199 81-333 97-296 (394)
26 COG4886 Leucine-rich repeat (L 99.2 2.6E-11 5.5E-16 117.2 7.1 200 57-310 97-297 (394)
27 KOG0532 Leucine-rich repeat (L 99.2 4.1E-13 8.8E-18 126.2 -5.3 194 52-300 74-270 (722)
28 KOG1909 Ran GTPase-activating 99.2 1.3E-12 2.7E-17 116.1 -3.0 90 238-327 209-311 (382)
29 KOG3207 Beta-tubulin folding c 99.2 4.5E-12 9.8E-17 115.7 -0.2 209 75-328 119-340 (505)
30 PLN03150 hypothetical protein; 99.1 1.4E-10 3.1E-15 117.4 9.4 108 79-187 420-528 (623)
31 KOG3207 Beta-tubulin folding c 99.1 8.8E-12 1.9E-16 113.9 -0.0 208 98-350 118-339 (505)
32 KOG1909 Ran GTPase-activating 99.1 3.8E-12 8.3E-17 113.1 -3.7 238 25-303 29-311 (382)
33 KOG1259 Nischarin, modulator o 99.1 2.6E-11 5.7E-16 105.7 1.4 130 150-329 284-414 (490)
34 PF14580 LRR_9: Leucine-rich r 99.1 1.5E-10 3.2E-15 96.5 4.6 36 53-90 42-77 (175)
35 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.4E-15 95.1 5.7 81 52-137 18-100 (175)
36 KOG4658 Apoptotic ATPase [Sign 99.0 1.8E-10 3.8E-15 119.4 5.6 278 25-329 522-809 (889)
37 PF13855 LRR_8: Leucine rich r 98.9 7.6E-10 1.6E-14 75.9 3.9 59 54-112 2-60 (61)
38 KOG1259 Nischarin, modulator o 98.9 4.3E-10 9.4E-15 98.2 2.3 134 121-305 280-414 (490)
39 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.4E-14 74.3 3.5 61 77-137 1-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.8 2E-09 4.4E-14 111.6 3.2 132 25-161 544-679 (889)
41 KOG0531 Protein phosphatase 1, 98.8 1.1E-09 2.3E-14 106.2 0.1 245 52-331 71-322 (414)
42 KOG0531 Protein phosphatase 1, 98.7 1.1E-09 2.4E-14 106.1 -1.0 241 52-327 48-290 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 8.1E-10 1.8E-14 96.5 -7.3 60 239-300 310-373 (419)
44 KOG1859 Leucine-rich repeat pr 98.5 3.8E-09 8.2E-14 102.7 -5.9 113 236-353 181-295 (1096)
45 KOG2982 Uncharacterized conser 98.4 3.2E-08 7E-13 86.6 -0.5 82 241-322 198-287 (418)
46 KOG1859 Leucine-rich repeat pr 98.3 2.4E-08 5.2E-13 97.3 -5.1 126 77-209 164-290 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.3 9.9E-08 2.1E-12 82.6 -0.9 87 241-327 213-316 (388)
48 COG5238 RNA1 Ran GTPase-activa 98.3 2.6E-07 5.7E-12 80.0 1.0 236 76-351 29-317 (388)
49 KOG2120 SCF ubiquitin ligase, 98.2 1.5E-08 3.3E-13 88.6 -7.5 179 126-324 186-373 (419)
50 KOG4579 Leucine-rich repeat (L 98.1 8.8E-08 1.9E-12 74.3 -4.2 90 52-144 52-141 (177)
51 KOG4579 Leucine-rich repeat (L 98.0 1.9E-07 4.1E-12 72.5 -4.2 86 243-332 54-140 (177)
52 KOG2982 Uncharacterized conser 97.9 4.9E-06 1.1E-10 73.3 2.7 68 265-332 198-267 (418)
53 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 50.6 3.1 36 78-114 2-37 (44)
54 PF12799 LRR_4: Leucine Rich r 97.9 8.3E-06 1.8E-10 51.1 2.3 35 267-302 2-36 (44)
55 KOG1644 U2-associated snRNP A' 97.9 3.8E-05 8.3E-10 64.0 6.2 102 78-183 43-149 (233)
56 PRK15386 type III secretion pr 97.8 9.6E-05 2.1E-09 69.6 9.2 33 242-277 156-188 (426)
57 KOG3665 ZYG-1-like serine/thre 97.7 1.3E-05 2.9E-10 81.5 2.0 134 52-188 121-264 (699)
58 PF13306 LRR_5: Leucine rich r 97.7 0.00018 3.9E-09 57.4 7.5 105 72-182 7-111 (129)
59 KOG1644 U2-associated snRNP A' 97.7 9.9E-05 2.1E-09 61.6 5.8 108 52-161 41-151 (233)
60 PRK15386 type III secretion pr 97.6 0.00019 4E-09 67.8 7.7 114 52-187 51-169 (426)
61 KOG3665 ZYG-1-like serine/thre 97.6 1.2E-05 2.7E-10 81.8 -0.8 134 26-164 122-264 (699)
62 PF13306 LRR_5: Leucine rich r 97.6 0.00021 4.6E-09 57.0 6.6 118 52-176 11-128 (129)
63 KOG2739 Leucine-rich acidic nu 97.0 0.0004 8.7E-09 60.5 2.3 39 99-137 63-103 (260)
64 KOG4341 F-box protein containi 96.9 7.5E-06 1.6E-10 75.4 -9.1 64 264-327 344-414 (483)
65 KOG2739 Leucine-rich acidic nu 96.8 0.00062 1.3E-08 59.3 2.1 106 51-160 41-153 (260)
66 KOG2123 Uncharacterized conser 96.5 0.00011 2.4E-09 64.4 -4.9 60 75-136 39-99 (388)
67 KOG4341 F-box protein containi 96.4 0.00012 2.6E-09 67.7 -5.2 258 25-326 163-438 (483)
68 KOG2123 Uncharacterized conser 96.4 0.00012 2.6E-09 64.1 -5.3 99 25-131 18-123 (388)
69 KOG4308 LRR-containing protein 96.3 6.4E-06 1.4E-10 80.2 -15.1 185 2-187 92-303 (478)
70 KOG1947 Leucine rich repeat pr 96.1 0.00062 1.3E-08 67.6 -2.6 111 76-186 187-307 (482)
71 KOG1947 Leucine rich repeat pr 95.5 0.00085 1.8E-08 66.6 -4.5 110 100-209 187-306 (482)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.4E-07 30.7 0.8 11 80-90 3-13 (22)
73 KOG3864 Uncharacterized conser 91.2 0.023 5E-07 47.9 -2.5 81 244-324 103-186 (221)
74 PF13504 LRR_7: Leucine rich r 90.8 0.17 3.6E-06 24.3 1.3 13 175-187 2-14 (17)
75 smart00369 LRR_TYP Leucine-ric 89.3 0.31 6.8E-06 26.2 1.8 12 103-114 4-15 (26)
76 smart00370 LRR Leucine-rich re 89.3 0.31 6.8E-06 26.2 1.8 12 103-114 4-15 (26)
77 smart00370 LRR Leucine-rich re 89.0 0.35 7.7E-06 26.0 1.9 14 290-303 2-15 (26)
78 smart00369 LRR_TYP Leucine-ric 89.0 0.35 7.7E-06 26.0 1.9 14 290-303 2-15 (26)
79 KOG4308 LRR-containing protein 88.5 0.0025 5.5E-08 62.4 -11.9 162 2-163 120-303 (478)
80 PF08693 SKG6: Transmembrane a 87.4 0.25 5.4E-06 29.6 0.7 26 385-410 13-38 (40)
81 PF13516 LRR_6: Leucine Rich r 87.1 0.14 3E-06 27.1 -0.5 18 26-43 2-19 (24)
82 KOG0473 Leucine-rich repeat pr 86.7 0.025 5.4E-07 48.7 -5.4 84 241-327 41-124 (326)
83 PF01102 Glycophorin_A: Glycop 86.5 0.29 6.4E-06 37.9 0.8 27 385-411 65-91 (122)
84 KOG0473 Leucine-rich repeat pr 86.3 0.014 2.9E-07 50.3 -7.1 83 52-137 41-123 (326)
85 PF04478 Mid2: Mid2 like cell 83.1 0.39 8.4E-06 38.5 0.1 23 385-407 50-72 (154)
86 KOG4242 Predicted myosin-I-bin 81.0 4.4 9.6E-05 39.1 6.2 23 25-47 164-186 (553)
87 KOG3864 Uncharacterized conser 80.0 0.24 5.2E-06 41.9 -2.1 33 103-135 103-135 (221)
88 PF15102 TMEM154: TMEM154 prot 79.2 1.1 2.5E-05 35.6 1.5 17 397-413 72-88 (146)
89 PTZ00382 Variant-specific surf 75.3 0.99 2.1E-05 33.6 0.2 19 385-403 67-85 (96)
90 PF02439 Adeno_E3_CR2: Adenovi 73.0 2.5 5.4E-05 25.0 1.4 9 386-394 9-17 (38)
91 KOG3763 mRNA export factor TAP 70.2 2 4.4E-05 42.1 1.0 64 264-329 216-285 (585)
92 smart00368 LRR_RI Leucine rich 69.4 3.4 7.3E-05 22.7 1.4 17 26-42 2-18 (28)
93 smart00365 LRR_SD22 Leucine-ri 67.9 4.6 0.0001 21.8 1.7 13 290-302 2-14 (26)
94 smart00364 LRR_BAC Leucine-ric 67.9 4 8.6E-05 22.0 1.4 13 291-303 3-15 (26)
95 PTZ00370 STEVOR; Provisional 65.6 2.9 6.3E-05 37.4 1.0 21 400-420 272-292 (296)
96 TIGR01478 STEVOR variant surfa 65.2 2.8 6E-05 37.4 0.8 16 401-416 277-292 (295)
97 PF01299 Lamp: Lysosome-associ 63.8 5 0.00011 37.2 2.2 11 402-412 290-300 (306)
98 KOG3763 mRNA export factor TAP 60.7 2.9 6.3E-05 41.1 0.1 12 126-137 271-282 (585)
99 PF08374 Protocadherin: Protoc 57.5 3.1 6.7E-05 35.4 -0.3 23 385-407 39-61 (221)
100 KOG4242 Predicted myosin-I-bin 55.7 28 0.00062 33.8 5.6 110 51-162 163-280 (553)
101 PF14575 EphA2_TM: Ephrin type 54.6 8.9 0.00019 27.0 1.7 24 387-410 4-27 (75)
102 PF15176 LRR19-TM: Leucine-ric 54.1 10 0.00022 28.0 2.0 38 380-417 14-53 (102)
103 TIGR00864 PCC polycystin catio 53.4 8.3 0.00018 45.6 2.1 31 272-302 1-31 (2740)
104 PF11770 GAPT: GRB2-binding ad 52.9 5.4 0.00012 31.8 0.4 14 397-410 23-36 (158)
105 PF11770 GAPT: GRB2-binding ad 50.2 11 0.00023 30.2 1.6 29 386-414 9-37 (158)
106 PRK01844 hypothetical protein; 49.4 7.3 0.00016 26.9 0.6 29 387-415 5-33 (72)
107 PF12191 stn_TNFRSF12A: Tumour 43.9 11 0.00023 29.2 0.8 16 398-413 92-107 (129)
108 PF14991 MLANA: Protein melan- 43.2 7.6 0.00016 29.4 -0.1 21 398-419 38-58 (118)
109 PRK00523 hypothetical protein; 43.1 11 0.00023 26.1 0.6 30 387-416 6-35 (72)
110 PF05545 FixQ: Cbb3-type cytoc 39.6 19 0.00042 22.8 1.4 18 397-414 21-38 (49)
111 PF02009 Rifin_STEVOR: Rifin/s 38.9 14 0.0003 34.0 0.8 25 390-414 259-283 (299)
112 smart00367 LRR_CC Leucine-rich 38.9 22 0.00048 18.8 1.4 12 290-301 2-13 (26)
113 PTZ00046 rifin; Provisional 31.6 25 0.00055 32.9 1.3 14 401-414 333-346 (358)
114 PF15050 SCIMP: SCIMP protein 31.5 19 0.0004 27.6 0.4 6 408-413 31-36 (133)
115 PF12273 RCR: Chitin synthesis 31.3 16 0.00035 28.9 0.0 13 404-416 17-29 (130)
116 TIGR01477 RIFIN variant surfac 31.0 26 0.00056 32.7 1.3 14 401-414 328-341 (353)
117 PF02480 Herpes_gE: Alphaherpe 30.1 17 0.00037 35.5 0.0 11 386-396 354-364 (439)
118 PTZ00208 65 kDa invariant surf 29.2 35 0.00076 32.3 1.8 28 384-411 387-414 (436)
119 PF05337 CSF-1: Macrophage col 28.9 19 0.0004 32.2 0.0 25 387-411 228-252 (285)
120 PF05454 DAG1: Dystroglycan (D 28.7 19 0.00041 32.8 0.0 11 407-417 169-179 (290)
121 PTZ00382 Variant-specific surf 26.7 12 0.00026 27.8 -1.3 21 385-405 63-83 (96)
122 PF15179 Myc_target_1: Myc tar 25.3 38 0.00082 28.2 1.2 25 385-409 25-49 (197)
123 PF11044 TMEMspv1-c74-12: Plec 25.3 33 0.00072 21.0 0.6 29 387-415 7-35 (49)
124 PF08114 PMP1_2: ATPase proteo 25.2 24 0.00053 21.2 0.1 8 404-411 27-34 (43)
125 PF12606 RELT: Tumour necrosis 25.1 31 0.00068 22.1 0.5 16 405-420 20-35 (50)
126 PF05808 Podoplanin: Podoplani 25.1 24 0.00052 28.8 0.0 30 385-414 130-160 (162)
127 PF07204 Orthoreo_P10: Orthore 24.5 41 0.0009 24.5 1.1 27 385-411 43-69 (98)
128 PF06365 CD34_antigen: CD34/Po 23.5 36 0.00079 29.1 0.8 14 411-424 127-140 (202)
129 PHA02662 ORF131 putative membr 23.1 32 0.00069 29.6 0.4 14 401-414 202-215 (226)
130 PF10577 UPF0560: Uncharacteri 22.1 46 0.00099 34.7 1.3 30 382-411 271-300 (807)
131 PF15012 DUF4519: Domain of un 21.9 52 0.0011 21.5 1.1 22 387-408 31-52 (56)
132 PHA03099 epidermal growth fact 21.8 54 0.0012 25.6 1.3 8 392-399 108-115 (139)
133 PHA03265 envelope glycoprotein 21.4 28 0.0006 32.2 -0.3 34 398-431 363-398 (402)
134 PF15065 NCU-G1: Lysosomal tra 21.2 78 0.0017 29.9 2.5 26 386-411 322-347 (350)
135 PF13908 Shisa: Wnt and FGF in 21.1 1E+02 0.0022 25.9 3.1 6 386-391 81-86 (179)
136 PF14316 DUF4381: Domain of un 21.0 44 0.00096 27.0 0.8 12 408-419 44-55 (146)
137 TIGR00864 PCC polycystin catio 20.5 61 0.0013 39.0 2.0 33 59-91 1-33 (2740)
138 PHA03286 envelope glycoprotein 20.5 82 0.0018 30.4 2.5 12 385-396 392-403 (492)
139 TIGR01478 STEVOR variant surfa 20.3 35 0.00076 30.7 0.1 24 399-422 270-293 (295)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9e-39 Score=341.81 Aligned_cols=343 Identities=31% Similarity=0.476 Sum_probs=201.0
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+||+++|.+++.+|.... . +++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+.+|..+.++++|+
T Consensus 240 ~L~L~~n~l~~~~p~~l~-~----l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 311 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLG-N----LKNLQYLFLYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311 (968)
T ss_pred EEECcCceeccccChhHh-C----CCCCCEEECcCCeeeccCchhH---hhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence 478888888887774221 1 4467777777776666666555 3366666666666666666666666666666
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 160 (433)
+|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++. .+++|+.|++++|
T Consensus 312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~l~~n 390 (968)
T PLN00113 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLILFSN 390 (968)
T ss_pred EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEECcCC
Confidence 666666666666666666666666666666666666666666666666666666666555555544 3445555555555
Q ss_pred cccccCCccccCCCCcCEEEccCCcCcccCCCCccc------------------------ccccccccccccccc--ccc
Q 042476 161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINN------------------------FTAMATINSSNQKNA--IYY 214 (433)
Q Consensus 161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~------------------------l~~L~~L~l~~~~~~--~~~ 214 (433)
.+.+.+|..+..+++|+.|++++|.+++..|..+.. +++|+.|+++.|... .+.
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence 554444444444455555555555444444444444 444444444444311 011
Q ss_pred cccCCceeeeccee-eeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCC
Q 042476 215 FVTRGNIVFEDASV-VTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE 293 (433)
Q Consensus 215 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 293 (433)
..........++.. ...+..+..+..++.|+.|++++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+
T Consensus 471 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 550 (968)
T PLN00113 471 SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550 (968)
T ss_pred ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence 00000000000000 01122333444556666677777766666666666666777777777777666666666677777
Q ss_pred EEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC-cCCCC
Q 042476 294 SLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGA 352 (433)
Q Consensus 294 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l~~~ 352 (433)
.|++++|++++.+|..+..+++|+.+++++|++++.+|....+..+....+.+| .+||.
T Consensus 551 ~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred EEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence 777777777666666666666777777777777776666666666666666666 45553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-37 Score=330.99 Aligned_cols=342 Identities=32% Similarity=0.478 Sum_probs=288.2
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+|+|++|.+++.+|... +. +++|++|++++|.+++.+|..+ .++++|+.|++++|.+.+..|..+.++++|+
T Consensus 216 ~L~L~~n~l~~~~p~~l-~~----l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEI-GG----LTSLNHLDLVYNNLTGPIPSSL---GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred EEECcCCccCCcCChhH-hc----CCCCCEEECcCceeccccChhH---hCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence 48999999999888432 22 6789999999999999998888 5699999999999999999999999999999
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 160 (433)
+|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n 366 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTN 366 (968)
T ss_pred EEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCC
Confidence 999999999999999999999999999999999999999999999999999999999888988877 7999999999999
Q ss_pred cccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc--ccccccC-Cceeeecce----------
Q 042476 161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA--IYYFVTR-GNIVFEDAS---------- 227 (433)
Q Consensus 161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~--~~~~~~~-~~~~~~~~~---------- 227 (433)
.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+++.+... .+..+.. .......+.
T Consensus 367 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence 999999999999999999999999999999999999999999988877532 1111000 000000000
Q ss_pred ---------e-----e-eccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCC
Q 042476 228 ---------V-----V-TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI 292 (433)
Q Consensus 228 ---------~-----~-~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 292 (433)
. . ..+..+... ..++|+.|++++|.+++..|..+..+++|+.|+|++|++.+.+|..+..+++|
T Consensus 447 ~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 447 RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence 0 0 001111111 23578889999999988888888999999999999999999999999999999
Q ss_pred CEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcccccCCcCCCC
Q 042476 293 ESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCGA 352 (433)
Q Consensus 293 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~~ 352 (433)
+.|++++|.+++.+|..+..+++|+.|++++|++++.+|.. ..++.++.+++++|.+.+.
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence 99999999999999999999999999999999999988865 5567788899999987763
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=9e-34 Score=263.22 Aligned_cols=348 Identities=21% Similarity=0.223 Sum_probs=186.0
Q ss_pred CEEeecccCcccCCCCCC---------------CCCCCC---CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCC
Q 042476 1 ELNLSNNQIYGVIPYFDH---------------RPLPYQ---PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSK 62 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~---------------~~~p~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~ 62 (433)
.||+|+|.++.+-++++. ..||.. ..+++.|+|..|.++..-...+ ..++.|+.|||+.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L---~~l~alrslDLSr 158 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEEL---SALPALRSLDLSR 158 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHH---HhHhhhhhhhhhh
Confidence 388899988876553211 334433 3445555555555554433333 2355566666666
Q ss_pred CcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCC
Q 042476 63 NYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIP 142 (433)
Q Consensus 63 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 142 (433)
|.|+.+....|..-.++++|+|++|.|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|.+ ..+.
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive 237 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVE 237 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce-eeeh
Confidence 655544444555545566666666666555555555566666666666666655555555566666666666555 2222
Q ss_pred hhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccc----ccC
Q 042476 143 TWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYF----VTR 218 (433)
Q Consensus 143 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~----~~~ 218 (433)
.-.|.++++|+.|.+.+|.+...-..+|..+.++++|+|+.|+++..-..++-+++.|+.|+++.+...-... +..
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 2233345555555555555543334455556666666666666655555555666666666666553111000 000
Q ss_pred CceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCc---ccCCCCCCCEE
Q 042476 219 GNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPE---NIGNMRSIESL 295 (433)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L 295 (433)
.-.........+.....+.+..+..|++|.|++|.++..-...|..+++|++|||++|.+++.+.+ .|..+++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 000000001112233333444455566666666666555555566666666666666666544432 35556677777
Q ss_pred eCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC-cCCCC
Q 042476 296 DFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGA 352 (433)
Q Consensus 296 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l~~~ 352 (433)
++.+|++.......|..++.|+.|||.+|.+...-|....-..++.+.+..- -||.+
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC 455 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence 7777776554555666777777777777776655554433335555544332 45554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.4e-33 Score=260.40 Aligned_cols=280 Identities=18% Similarity=0.231 Sum_probs=211.2
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
++++|+|++|+++....+.| ..+.+|..|.|+.|+++...+..|+++++|+.|+|..|.|...---.|.++++|+.|
T Consensus 174 ni~~L~La~N~It~l~~~~F---~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHF---DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CceEEeeccccccccccccc---cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 56777777777766666665 346677777777777776666666677777777777777663334456677777777
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 186 (433)
.+..|.+...-..+|..+.++++|+|..|++...-..|++ +++.|+.|+++.|.+....++++...++|+.|+|++|++
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i 329 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI 329 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence 7777777666666677778888888888887655566666 788888888888888877778888888888888888888
Q ss_pred cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCC---cccc
Q 042476 187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIP---MQLT 263 (433)
Q Consensus 187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~---~~~~ 263 (433)
+..-+..|..+..|++|+++.+.. ...-...+..+.+|++|||++|.+...+. ..|.
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi--------------------~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSI--------------------DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccch--------------------HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 766667777888888888777651 11222345568889999999999875543 4578
Q ss_pred CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCC
Q 042476 264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIP 331 (433)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 331 (433)
++++|++|+|.+|++..+...+|.++++|+.|||.+|.+...-|..|..+ +|+.|-+..-.+-|.+.
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 89999999999999986777889999999999999999999999999988 89999887666655433
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2e-30 Score=242.90 Aligned_cols=316 Identities=23% Similarity=0.348 Sum_probs=171.4
Q ss_pred EEeecccCcc-cCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 2 LNLSNNQIYG-VIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 2 L~ls~n~l~~-~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
.|+|+|.|+| .+|+-.. +|+++++|.|....+. .+|..+ +.+.+|++|.+++|++. .+...++.++.|+
T Consensus 12 vDfsgNDFsg~~FP~~v~-----qMt~~~WLkLnrt~L~-~vPeEL---~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVE-----QMTQMTWLKLNRTKLE-QVPEEL---SRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred ccccCCcCCCCcCchhHH-----HhhheeEEEechhhhh-hChHHH---HHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 4889999994 5663211 1445555555555443 233333 23445555555555444 2333344444444
Q ss_pred EEEccCCcCcc-cCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeC
Q 042476 81 VLNLDDNYFTG-NLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS 159 (433)
Q Consensus 81 ~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 159 (433)
.+++++|++.. .+|..+..+..|..|+|++|.+. ..|..+..-.++-+|+|++|.+ ..+|..++-++..|-.|+|++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcccc
Confidence 44444444431 13444444444444444444444 3444444444444444444444 344444444444444444444
Q ss_pred ccccccCCccccCCCCcCEEEccCCcCc-------------------------ccCCCCccccccccccccccccccccc
Q 042476 160 NKFNGSLPVQLCHLTFLRILDVAHNNLS-------------------------GTIPRCINNFTAMATINSSNQKNAIYY 214 (433)
Q Consensus 160 n~l~~~~~~~l~~l~~L~~L~l~~n~~~-------------------------~~~p~~~~~l~~L~~L~l~~~~~~~~~ 214 (433)
|++. .+|...+.+..|++|+|++|.+. ..+|..+..+.+|..++++.+.
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~----- 233 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN----- 233 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-----
Confidence 4444 33444444444444444444432 2344455555555555544433
Q ss_pred cccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCE
Q 042476 215 FVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIES 294 (433)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 294 (433)
-...++-...+++|+.|+|++|.++ ++....+...+|++|+||.|+++ .+|.++..+++|+.
T Consensus 234 ----------------Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 234 ----------------LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred ----------------CCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence 1222333444666777777777776 33344455667777777777776 67777777777777
Q ss_pred EeCcCCcCCC-CCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCC
Q 042476 295 LDFSTNRLFG-RIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAP 353 (433)
Q Consensus 295 L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~ 353 (433)
|.+.+|+++. .+|..++.+..|+.+..++|.+.-.+...+....++.+.++.|.|-..|
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeech
Confidence 7777777654 4777777777777777777777644444455666777777777665444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=4.9e-30 Score=240.34 Aligned_cols=317 Identities=23% Similarity=0.296 Sum_probs=239.6
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCccccc-CCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGS-IIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHL 79 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 79 (433)
+|.+++|++.....+. .. +++|+.+++..|++... +|..++. +..|+.|||++|++. ..|..+.+.+++
T Consensus 59 HLs~~HN~L~~vhGEL-----s~-Lp~LRsv~~R~N~LKnsGiP~diF~---l~dLt~lDLShNqL~-EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 59 HLSMAHNQLISVHGEL-----SD-LPRLRSVIVRDNNLKNSGIPTDIFR---LKDLTILDLSHNQLR-EVPTNLEYAKNS 128 (1255)
T ss_pred hhhhhhhhhHhhhhhh-----cc-chhhHHHhhhccccccCCCCchhcc---cccceeeecchhhhh-hcchhhhhhcCc
Confidence 4566777777554333 21 55788888888888743 6666643 888899999999988 678888888888
Q ss_pred CEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeC
Q 042476 80 QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS 159 (433)
Q Consensus 80 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 159 (433)
-+|+|++|+|..+....|-++..|-.|+|++|++. .+|..++.+.+|++|+|++|++...--..+. .+++|+.|.+++
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~ 206 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSN 206 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhccc
Confidence 89999999988433345678888899999999987 6777888899999999999887321111111 567788888887
Q ss_pred cccc-ccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehh
Q 042476 160 NKFN-GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYN 238 (433)
Q Consensus 160 n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (433)
.+-+ ..+|.++..+.+|+.+|++.|++. .+|..+-.+.+|+.|+++.+... .+....
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it---------------------eL~~~~ 264 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT---------------------ELNMTE 264 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee---------------------eeeccH
Confidence 6544 457888999999999999999997 88999999999999999887511 111122
Q ss_pred hhccceeEEEcccCcccccCCccccCCccCceEeCcCccccc-CCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCC
Q 042476 239 SILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG-KIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLN 317 (433)
Q Consensus 239 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 317 (433)
..+.+|++|+++.|+++ .+|..+.++++|+.|.+.+|+++- -+|.-++.+.+|+.+..++|.+ ..+|+.++.|..|+
T Consensus 265 ~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQ 342 (1255)
T ss_pred HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHH
Confidence 34667888899999888 778888888889988888888742 3677788888888888888887 47888888888888
Q ss_pred eeeCcCCcCcccCCCCcccCccCcccccCC-cCCCCC
Q 042476 318 HLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGAP 353 (433)
Q Consensus 318 ~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~ 353 (433)
.|.|+.|++-..+....-++.++.+|+..| .|-.+|
T Consensus 343 kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 343 KLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 888888888754444456677888888777 554443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=5.6e-29 Score=221.96 Aligned_cols=329 Identities=26% Similarity=0.383 Sum_probs=199.8
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV 81 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (433)
||.++|.+....+++.. +..++.|+..+|+++. .|+.+ ..+.++..+++.+|.++...|+ .-+|+.|+.
T Consensus 119 l~~s~n~~~el~~~i~~------~~~l~dl~~~~N~i~s-lp~~~---~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ 187 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGR------LLDLEDLDATNNQISS-LPEDM---VNLSKLSKLDLEGNKLKALPEN-HIAMKRLKH 187 (565)
T ss_pred hhccccceeecCchHHH------Hhhhhhhhcccccccc-CchHH---HHHHHHHHhhccccchhhCCHH-HHHHHHHHh
Confidence 45555555543333322 4456666666676654 33333 3466777777777777744333 334777888
Q ss_pred EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc
Q 042476 82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK 161 (433)
Q Consensus 82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 161 (433)
||...|-+. .+|+.++.+.+|..|++..|++. .+| .|..+..|.++.++.|.+ ..+|....++++++..||++.|+
T Consensus 188 ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 188 LDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred cccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccc
Confidence 888777776 67888888888888888888887 455 677888888888888877 67788887778888888888888
Q ss_pred ccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc-----------------cc----------
Q 042476 162 FNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI-----------------YY---------- 214 (433)
Q Consensus 162 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~-----------------~~---------- 214 (433)
++ +.|+.++-+.+|+.||+++|.++ .+|..++++ .|+.|.+-++.... ..
T Consensus 264 lk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 264 LK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred cc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 87 67888888888888888888887 677777777 66666555543110 00
Q ss_pred ------cccCCceeeeccee------------------------------------------------------------
Q 042476 215 ------FVTRGNIVFEDASV------------------------------------------------------------ 228 (433)
Q Consensus 215 ------~~~~~~~~~~~~~~------------------------------------------------------------ 228 (433)
........+.+...
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence 00000000000000
Q ss_pred -eeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCC
Q 042476 229 -VTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIP 307 (433)
Q Consensus 229 -~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 307 (433)
......+...+.+++|+.|++++|-+. .+|..++.+..|+.|+++.|.+. .+|+.+-.+..++.+-.++|++....|
T Consensus 421 nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 421 NNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred cCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh
Confidence 001111222233444444444444443 34444444444444444444443 344433333344444444455544445
Q ss_pred ccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCC
Q 042476 308 QSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLC 350 (433)
Q Consensus 308 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~ 350 (433)
+.+.++.+|+.||+.+|.+...+|..+.++++..+++.||++.
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 5577778888888888888877777788888888888888664
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=3e-25 Score=198.32 Aligned_cols=262 Identities=27% Similarity=0.361 Sum_probs=135.2
Q ss_pred ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476 28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH 107 (433)
Q Consensus 28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 107 (433)
++.|+++.|.+...-+ .+ .++..+.+|.+++|++. ..|.+++.+..++.++.++|++. .+|..+..+.+|+.++
T Consensus 47 l~~lils~N~l~~l~~-dl---~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLRE-DL---KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhhccH-hh---hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 4455555555443222 11 33455555555555554 34444455555555555555555 4555555555555555
Q ss_pred ccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476 108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
++.|.+. .+|+.++.+..|..++...|.+ ..+|..++ .+.++..+++.+|++... |...-.++.|++||+..|.+.
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i-~slp~~~~-~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQI-SSLPEDMV-NLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLE 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhcccccc-ccCchHHH-HHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhh
Confidence 5555554 3444445555555555555555 34555554 455555555555555522 222222555555555555444
Q ss_pred ccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCcc
Q 042476 188 GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEG 267 (433)
Q Consensus 188 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~ 267 (433)
.+|..++.+.+ |..|++..|.+. .+| .|.+|..
T Consensus 197 -tlP~~lg~l~~--------------------------------------------L~~LyL~~Nki~-~lP-ef~gcs~ 229 (565)
T KOG0472|consen 197 -TLPPELGGLES--------------------------------------------LELLYLRRNKIR-FLP-EFPGCSL 229 (565)
T ss_pred -cCChhhcchhh--------------------------------------------hHHHHhhhcccc-cCC-CCCccHH
Confidence 45555555444 445555555554 334 4555666
Q ss_pred CceEeCcCcccccCCCcccC-CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccC
Q 042476 268 LQTLNLSHNFFVGKIPENIG-NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSG 346 (433)
Q Consensus 268 L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~ 346 (433)
|++|.++.|++. .+|.+.. +++++..||+.+|++. ..|+.++-+.+|++||+++|.+++..+..+.+ .+..+.+.|
T Consensus 230 L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 230 LKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred HHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcC
Confidence 666666666554 3443332 5556666666666663 55555555556666666666666555555555 555555555
Q ss_pred CcC
Q 042476 347 NDL 349 (433)
Q Consensus 347 n~l 349 (433)
|++
T Consensus 307 NPl 309 (565)
T KOG0472|consen 307 NPL 309 (565)
T ss_pred Cch
Confidence 544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1e-20 Score=203.77 Aligned_cols=292 Identities=18% Similarity=0.250 Sum_probs=150.3
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
+|+.|++.++.+. ..|..+ ...+|+.|++.+|.+. .++..+..+++|+.|+|+++.....+| .+..+++|++|
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f----~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L 662 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF----RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETL 662 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC----CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEE
Confidence 4555555555443 233332 1456666666666665 345555666666666666654433444 35566666666
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 186 (433)
++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.....+|.. .++|+.|++++|.+
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i 737 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI 737 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc
Confidence 666665445566666666666666666655445565544 4666666666666544344432 34566666666666
Q ss_pred cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc
Q 042476 187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE 266 (433)
Q Consensus 187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~ 266 (433)
. .+|..+ .+++|..|.+..+...... . ............+++|+.|++++|...+.+|..+++++
T Consensus 738 ~-~lP~~~-~l~~L~~L~l~~~~~~~l~---------~----~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~ 802 (1153)
T PLN03210 738 E-EFPSNL-RLENLDELILCEMKSEKLW---------E----RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH 802 (1153)
T ss_pred c-cccccc-cccccccccccccchhhcc---------c----cccccchhhhhccccchheeCCCCCCccccChhhhCCC
Confidence 4 455433 3455555554432110000 0 00000000111233455555555554445555555555
Q ss_pred cCceEeCcCcccccCCCcccCCCC---------------------CCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCC-
Q 042476 267 GLQTLNLSHNFFVGKIPENIGNMR---------------------SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN- 324 (433)
Q Consensus 267 ~L~~L~Ls~n~l~~~~~~~l~~l~---------------------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n- 324 (433)
+|+.|++++|...+.+|..+ +++ +|+.|++++|.++ .+|.++..+++|+.|++++|
T Consensus 803 ~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 803 KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 55555555543322344332 334 4555555555553 45555666666666666663
Q ss_pred cCcccCCCCcccCccCcccccCC
Q 042476 325 DLSGQIPSSTQLQSFGASCFSGN 347 (433)
Q Consensus 325 ~l~~~~p~~~~~~~l~~~~~~~n 347 (433)
++.+..+....++.++.++++++
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CcCccCcccccccCCCeeecCCC
Confidence 33433333344555666666555
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.3e-20 Score=201.03 Aligned_cols=266 Identities=21% Similarity=0.238 Sum_probs=200.6
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+.+|+.|+++++.+.. ++..+ ..+++|+.|+++++.....+|. +..+++|++|+|++|.....+|..+.++++|+
T Consensus 610 ~~~L~~L~L~~s~l~~-L~~~~---~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-LWDGV---HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred ccCCcEEECcCccccc-ccccc---ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 6789999999998764 34333 4588999999988764445664 77888999999998876668888899999999
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccc--------------
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL-------------- 170 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-------------- 170 (433)
.|++++|.....+|..+ ++++|+.|++++|.....+|. ...+|+.|++++|.+. .+|..+
T Consensus 685 ~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 685 DLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMK 758 (1153)
T ss_pred EEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccccccccccccccccc
Confidence 99999876555666655 688888888888865555543 2457778888777765 333321
Q ss_pred ----------------cCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccce
Q 042476 171 ----------------CHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLL 234 (433)
Q Consensus 171 ----------------~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (433)
...++|+.|++++|...+.+|..+.++++|+.|++++|.... ..
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~--------------------~L 818 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE--------------------TL 818 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC--------------------ee
Confidence 123578888888887777888888899999999888764211 01
Q ss_pred eehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCC
Q 042476 235 VEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLS 314 (433)
Q Consensus 235 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 314 (433)
+.. ..+++|+.|++++|.....+|.. ..+|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..++
T Consensus 819 P~~-~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 819 PTG-INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred CCC-CCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 111 13678999999998766555543 468999999999998 7899999999999999999765567888888999
Q ss_pred CCCeeeCcCCcC
Q 042476 315 FLNHLNLSENDL 326 (433)
Q Consensus 315 ~L~~L~L~~n~l 326 (433)
+|+.+++++|.-
T Consensus 894 ~L~~L~l~~C~~ 905 (1153)
T PLN03210 894 HLETVDFSDCGA 905 (1153)
T ss_pred CCCeeecCCCcc
Confidence 999999999963
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=6.1e-21 Score=191.92 Aligned_cols=259 Identities=25% Similarity=0.325 Sum_probs=195.2
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
.||++.|.|+ .+|... .++|+.|++.+|+++. +|. ..++|++|++++|+++. +|.. .++|+
T Consensus 205 ~LdLs~~~Lt-sLP~~l-------~~~L~~L~L~~N~Lt~-LP~------lp~~Lk~LdLs~N~Lts-LP~l---p~sL~ 265 (788)
T PRK15387 205 VLNVGESGLT-TLPDCL-------PAHITTLVIPDNNLTS-LPA------LPPELRTLEVSGNQLTS-LPVL---PPGLL 265 (788)
T ss_pred EEEcCCCCCC-cCCcch-------hcCCCEEEccCCcCCC-CCC------CCCCCcEEEecCCccCc-ccCc---ccccc
Confidence 3789999998 567421 2379999999999985 442 26899999999999984 5543 46899
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 160 (433)
.|++++|.+. .+|..+ ++|+.|++++|.++. +|. ..++|+.|++++|.+. .+|.. ..+|+.|++++|
T Consensus 266 ~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N 332 (788)
T PRK15387 266 ELSIFSNPLT-HLPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNN 332 (788)
T ss_pred eeeccCCchh-hhhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCC----cccccccccccC
Confidence 9999999988 456533 578899999999984 454 3578999999999984 56542 346888999999
Q ss_pred cccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhh
Q 042476 161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI 240 (433)
Q Consensus 161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
.+.. +|.. ..+|+.|++++|+++ .+|... .+|+.|+++++... .++ ..
T Consensus 333 ~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~lp---~~L~~L~Ls~N~L~---------------------~LP---~l 380 (788)
T PRK15387 333 QLTS-LPTL---PSGLQELSVSDNQLA-SLPTLP---SELYKLWAYNNRLT---------------------SLP---AL 380 (788)
T ss_pred cccc-cccc---ccccceEecCCCccC-CCCCCC---cccceehhhccccc---------------------cCc---cc
Confidence 9984 5532 247999999999998 566543 35566666554311 011 11
Q ss_pred ccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN 320 (433)
Q Consensus 241 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 320 (433)
+.+|+.|++++|.+++ +|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 3468999999999984 5543 368999999999998 46653 357889999999997 6888899999999999
Q ss_pred CcCCcCcccCCC
Q 042476 321 LSENDLSGQIPS 332 (433)
Q Consensus 321 L~~n~l~~~~p~ 332 (433)
+++|++++..+.
T Consensus 452 Ls~N~Ls~~~~~ 463 (788)
T PRK15387 452 LEGNPLSERTLQ 463 (788)
T ss_pred CCCCCCCchHHH
Confidence 999999987664
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=6.6e-23 Score=183.03 Aligned_cols=289 Identities=18% Similarity=0.164 Sum_probs=210.2
Q ss_pred CCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccC-Ccc
Q 042476 35 NNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRN-NRL 113 (433)
Q Consensus 35 ~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~-n~l 113 (433)
+..++ .+|..+ -+....++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+-|.+|.++++|.+|-+.+ |+|
T Consensus 55 ~~GL~-eVP~~L-----P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 55 GKGLT-EVPANL-----PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred CCCcc-cCcccC-----CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 33444 366666 45678889999999988889999999999999999999988999999999888887776 889
Q ss_pred cccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc------
Q 042476 114 AGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS------ 187 (433)
Q Consensus 114 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~------ 187 (433)
+.+....|+++..|+-|.+.-|++ .-++...+..++++..|.+..|.+...-..++..+.+++++.+.-|.+.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i-~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHI-NCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhh-cchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 877777899999999999998888 5667777778999999999999888544458888888998888777631
Q ss_pred ------ccCCCCcccccccccccccccc-cccccc----ccCCceeeecceeee-ccceeehhhhccceeEEEcccCccc
Q 042476 188 ------GTIPRCINNFTAMATINSSNQK-NAIYYF----VTRGNIVFEDASVVT-KGLLVEYNSILNLVRSIDISKNNFS 255 (433)
Q Consensus 188 ------~~~p~~~~~l~~L~~L~l~~~~-~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~L~~n~~~ 255 (433)
...|..++...-..-..+.... +++... ...+........... ..-...-++.+++|+.|+|++|+++
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 1112222221111100000000 000000 000000000000000 0011122567899999999999999
Q ss_pred ccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccC
Q 042476 256 GEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQI 330 (433)
Q Consensus 256 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 330 (433)
+.-+.+|.+..++++|.|..|++...-...|.++.+|+.|+|++|+|+..-|..|..+.+|.+|++-.|++-+..
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 999999999999999999999998666778899999999999999999999999999999999999999987643
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=1.2e-19 Score=182.74 Aligned_cols=260 Identities=25% Similarity=0.319 Sum_probs=196.4
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476 26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS 105 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 105 (433)
..-..|+++++.++ .+|..+ .++|+.|++.+|+++. +|.. .++|++|++++|+++ .+|.. .++|+.
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l-----~~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCL-----PAHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLE 266 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcch-----hcCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc---ccccce
Confidence 34668999999998 567666 4589999999999984 5643 578999999999999 45643 468999
Q ss_pred EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCc
Q 042476 106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN 185 (433)
Q Consensus 106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 185 (433)
|++++|.+.. +|.. ..+|+.|++++|.+ ..+|. ..++|+.|++++|.+.+ +|... .+|+.|++++|.
T Consensus 267 L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~L-t~LP~----~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~ 333 (788)
T PRK15387 267 LSIFSNPLTH-LPAL---PSGLCKLWIFGNQL-TSLPV----LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQ 333 (788)
T ss_pred eeccCCchhh-hhhc---hhhcCEEECcCCcc-ccccc----cccccceeECCCCcccc-CCCCc---ccccccccccCc
Confidence 9999999884 4442 35788999999998 45664 25789999999999984 44422 367888999999
Q ss_pred CcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCC
Q 042476 186 LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL 265 (433)
Q Consensus 186 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l 265 (433)
++ .+|.. ..+|+.|++++|.... ++ ..+.+|+.|++++|.++. +|.. .
T Consensus 334 L~-~LP~l---p~~Lq~LdLS~N~Ls~---------------------LP---~lp~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 334 LT-SLPTL---PSGLQELSVSDNQLAS---------------------LP---TLPSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred cc-ccccc---ccccceEecCCCccCC---------------------CC---CCCcccceehhhcccccc-Cccc---c
Confidence 97 56642 2468888888765110 11 113568889999999984 5543 3
Q ss_pred ccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC-CcccCccCcccc
Q 042476 266 EGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS-STQLQSFGASCF 344 (433)
Q Consensus 266 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~~l~~~~~ 344 (433)
.+|+.|++++|+++ .+|.. .++|+.|++++|++++ +|... .+|+.|++++|+++. +|. ...++.+..+++
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLTR-LPESLIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCcccc-cChHHhhccCCCeEEC
Confidence 57999999999998 46653 3689999999999974 66543 468899999999995 554 466788899999
Q ss_pred cCCcCCCCC
Q 042476 345 SGNDLCGAP 353 (433)
Q Consensus 345 ~~n~l~~~~ 353 (433)
++|.+++..
T Consensus 453 s~N~Ls~~~ 461 (788)
T PRK15387 453 EGNPLSERT 461 (788)
T ss_pred CCCCCCchH
Confidence 999998763
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=4e-20 Score=187.09 Aligned_cols=246 Identities=25% Similarity=0.380 Sum_probs=125.8
Q ss_pred ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476 28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH 107 (433)
Q Consensus 28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 107 (433)
...|++++++++. +|..+ .+.++.|++++|+++ .+|..+. .+|++|++++|.++ .+|..+. ++|+.|+
T Consensus 180 ~~~L~L~~~~Lts-LP~~I-----p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 180 KTELRLKILGLTT-IPACI-----PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred ceEEEeCCCCcCc-CCccc-----ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 3445555554442 33322 234455555555554 2333221 24555555555544 3343322 2455555
Q ss_pred ccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476 108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
+++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 5555544 2333322 24555555555542 3443322 345555555555542 232221 24455555555554
Q ss_pred ccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCcc
Q 042476 188 GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEG 267 (433)
Q Consensus 188 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~ 267 (433)
.+|..+. ++|+.|+++.|... . ++. ..++.|+.|++++|.++ .+|..+ .++
T Consensus 318 -~LP~~l~--~sL~~L~Ls~N~Lt--------------------~-LP~--~l~~sL~~L~Ls~N~L~-~LP~~l--p~~ 368 (754)
T PRK15370 318 -ALPETLP--PGLKTLEAGENALT--------------------S-LPA--SLPPELQVLDVSKNQIT-VLPETL--PPT 368 (754)
T ss_pred -cCCcccc--ccceeccccCCccc--------------------c-CCh--hhcCcccEEECCCCCCC-cCChhh--cCC
Confidence 2332221 23444443333200 0 000 01245888888888887 455544 368
Q ss_pred CceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccc----cCCCCCCeeeCcCCcCcc
Q 042476 268 LQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSM----SSLSFLNHLNLSENDLSG 328 (433)
Q Consensus 268 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~ 328 (433)
|+.|+|++|+++ .+|..+. .+|+.|++++|+++ .+|..+ ..++.+..+++.+|+++.
T Consensus 369 L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 369 ITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred cCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 889999999887 5565553 46888899999886 445433 345778888999988863
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-22 Score=181.19 Aligned_cols=279 Identities=22% Similarity=0.225 Sum_probs=203.8
Q ss_pred cCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcC-ccccccCChhhh
Q 042476 68 DIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGE-NDFFGSIPTWVG 146 (433)
Q Consensus 68 ~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~ 146 (433)
.+|..+. +.-.+++|..|.|+...|.+|+.+++|+.|+|++|.|+.+-|++|..+++|..|-+.+ |++ ..+|...|
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI-~~l~k~~F 136 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI-TDLPKGAF 136 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch-hhhhhhHh
Confidence 4555432 2567899999999988888999999999999999999999999999999998887766 778 68999999
Q ss_pred hcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc-cccccc------CC
Q 042476 147 ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA-IYYFVT------RG 219 (433)
Q Consensus 147 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~------~~ 219 (433)
.++..++-|.+.-|++.....++|..++++..|.+-+|.+.......|..+.+++.+++..+... .+..-+ ..
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 99999999999999999777889999999999999999998333347888889988876655411 000000 00
Q ss_pred ceeeecceeee------ccce-eehhhhccceeEE---EcccCcccccCCc-cccCCccCceEeCcCcccccCCCcccCC
Q 042476 220 NIVFEDASVVT------KGLL-VEYNSILNLVRSI---DISKNNFSGEIPM-QLTNLEGLQTLNLSHNFFVGKIPENIGN 288 (433)
Q Consensus 220 ~~~~~~~~~~~------~~~~-~~~~~~~~~L~~L---~L~~n~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 288 (433)
.+.....+... .... ...-+....++.+ -.+.+...+..|. .|..+++|++|+|++|+++++-+.+|..
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 00000000000 0000 0000001112211 1223333334443 4788999999999999999999999999
Q ss_pred CCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcccccCCcC
Q 042476 289 MRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDL 349 (433)
Q Consensus 289 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l 349 (433)
...++.|.|..|++...-...|.++..|+.|+|.+|++++.-|.. ..+..+..+.+-+|++
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 999999999999997777778999999999999999999877755 3344566667777754
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.5e-21 Score=191.39 Aligned_cols=297 Identities=25% Similarity=0.333 Sum_probs=135.3
Q ss_pred EEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccC
Q 042476 31 LDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRN 110 (433)
Q Consensus 31 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 110 (433)
||+.+|.+.... + ..+++|+.+....|++.... ..-++++.|+.++|.++.. ...+. -.+|+++++++
T Consensus 183 ldLr~N~~~~~d---l---s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~-~~~p~-p~nl~~~dis~ 250 (1081)
T KOG0618|consen 183 LDLRYNEMEVLD---L---SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTL-DVHPV-PLNLQYLDISH 250 (1081)
T ss_pred eecccchhhhhh---h---hhccchhhhhhhhcccceEE----ecCcchheeeeccCcceee-ccccc-cccceeeecch
Confidence 677777665111 1 22455555555555443210 1223455555555555521 11111 13455555555
Q ss_pred CcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccC
Q 042476 111 NRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTI 190 (433)
Q Consensus 111 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 190 (433)
|+++ .+|+.+..+.+|+.++...|.+ ..+|..++ ...+|+.|.+.+|.+. -+|....+++.|++|+|..|++. .+
T Consensus 251 n~l~-~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~l 325 (1081)
T KOG0618|consen 251 NNLS-NLPEWIGACANLEALNANHNRL-VALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SL 325 (1081)
T ss_pred hhhh-cchHHHHhcccceEecccchhH-HhhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-cc
Confidence 5555 3335555555555555555555 34444444 4455555555555554 34444455555555555555554 33
Q ss_pred CCCc-cccc-cccccccccccccccccccCCcee-eec---ceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476 191 PRCI-NNFT-AMATINSSNQKNAIYYFVTRGNIV-FED---ASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN 264 (433)
Q Consensus 191 p~~~-~~l~-~L~~L~l~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 264 (433)
|+.+ .... .+..++.+.+.............. ... ............+..+..|+.|+|++|.+.......+.+
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k 405 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK 405 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence 3311 1111 122222222211111000000000 000 000011222223334555666666666665333334555
Q ss_pred CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCccc-CCCCcccCccCccc
Q 042476 265 LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQ-IPSSTQLQSFGASC 343 (433)
Q Consensus 265 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~~~l~~~~ 343 (433)
+..|+.|+||||+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++.. +|.....++|+.+|
T Consensus 406 le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 666666666666665 55555666666666666666654 344 455566666666666666532 22222224566666
Q ss_pred ccCC
Q 042476 344 FSGN 347 (433)
Q Consensus 344 ~~~n 347 (433)
++||
T Consensus 483 lSGN 486 (1081)
T KOG0618|consen 483 LSGN 486 (1081)
T ss_pred ccCC
Confidence 6666
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.9e-19 Score=180.86 Aligned_cols=246 Identities=24% Similarity=0.402 Sum_probs=186.0
Q ss_pred CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476 53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI 132 (433)
Q Consensus 53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 132 (433)
.+...|+++++.++ .+|..+. +.|+.|+|++|+++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45688999999888 4666553 57999999999999 5776654 58999999999998 4565543 58999999
Q ss_pred cCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc
Q 042476 133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI 212 (433)
Q Consensus 133 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 212 (433)
++|.+ ..+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+++.|....
T Consensus 249 s~N~L-~~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRI-TELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCcc-CcCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc
Confidence 99998 47887764 58999999999998 5676654 58999999999998 5665443 467777777654110
Q ss_pred cccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCC
Q 042476 213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI 292 (433)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 292 (433)
.+. ..+++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|
T Consensus 319 ---------------------LP~--~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L 369 (754)
T PRK15370 319 ---------------------LPE--TLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTI 369 (754)
T ss_pred ---------------------CCc--cccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCc
Confidence 000 113579999999999984 565553 79999999999997 5776553 789
Q ss_pred CEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-c----ccCccCcccccCCcCC
Q 042476 293 ESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-T----QLQSFGASCFSGNDLC 350 (433)
Q Consensus 293 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~----~~~~l~~~~~~~n~l~ 350 (433)
+.|++++|.++ .+|..+. ..|+.|++++|++++ +|.. . ..+.+..+++.+|++.
T Consensus 370 ~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 370 TTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 99999999997 4565544 469999999999984 4432 1 2345667788888764
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=3.9e-21 Score=188.47 Aligned_cols=269 Identities=25% Similarity=0.302 Sum_probs=180.9
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476 26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS 105 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 105 (433)
++++.|+.+.|-++...+.. ...++++++++.|+++ .+|+.+..+.+|+.++..+|++. .+|..+....+|++
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p-----~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP-----VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVS 291 (1081)
T ss_pred cchheeeeccCcceeecccc-----ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHH
Confidence 45666666666655332222 2456777788777777 35577777778888888887775 67777777777888
Q ss_pred EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCC-ccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476 106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPR-LLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN 184 (433)
Q Consensus 106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 184 (433)
|.+..|.+. .+|.....+..|++|+|..|.+ ..+|..++..... |+.|+.+.|.+.......=..++.|+.|.+.+|
T Consensus 292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred HHhhhhhhh-hCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence 888777777 4555566677888888888877 5666665543332 555555555554221111123456777777777
Q ss_pred cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476 185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN 264 (433)
Q Consensus 185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 264 (433)
.+++..-..+.++.+|+.|+++.+.. ..+.......+..|++|+|+||.++ .+|..+.+
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL--------------------~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~ 428 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRL--------------------NSFPASKLRKLEELEELNLSGNKLT-TLPDTVAN 428 (1081)
T ss_pred cccccchhhhccccceeeeeeccccc--------------------ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHh
Confidence 77766666677777777777776641 1222334455677888888888888 66788888
Q ss_pred CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcC
Q 042476 265 LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDL 326 (433)
Q Consensus 265 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 326 (433)
+..|++|...+|++. ..| ++..++.|+.+|+|.|+++...-......++|++||+++|..
T Consensus 429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 888888888888887 667 677888899999998888754322222227888889988873
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=4e-21 Score=180.23 Aligned_cols=183 Identities=23% Similarity=0.217 Sum_probs=91.4
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCcCcC------cCCccc
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNYFSG------DIPDCW 73 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~------~~~~~~ 73 (433)
.|||+.+++++..- ..+.....+|++|+++++.+++.....++.. ...+.+++++++++.+.+ .++..+
T Consensus 2 ~l~L~~~~l~~~~~----~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l 77 (319)
T cd00116 2 QLSLKGELLKTERA----TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77 (319)
T ss_pred ccccccCcccccch----HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH
Confidence 36777777774311 0010114457788888777754322222211 345667777777766552 123344
Q ss_pred CCCCCCCEEEccCCcCcccCCcccCCCCC---cCEEEccCCcccc----cCCccccCC-CCCcEEECcCccccccCChh-
Q 042476 74 MNWPHLQVLNLDDNYFTGNLPISIGTLSS---LRSLHLRNNRLAG----IFPVSLKNC-SSLISLDIGENDFFGSIPTW- 144 (433)
Q Consensus 74 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~- 144 (433)
..+++|+.|++++|.+....+..+..+.+ |++|++++|.+.. .+...+..+ ++|+.|++++|.+.+.....
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 55666666666666665444444333333 6666666666542 122233344 56666666666553211111
Q ss_pred --hhhcCCCccEEEeeCcccccc----CCccccCCCCcCEEEccCCcCc
Q 042476 145 --VGERFPRLLILNLRSNKFNGS----LPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 145 --~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
.+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 112344566666665555421 1223334445555555555543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=3.1e-19 Score=167.40 Aligned_cols=255 Identities=21% Similarity=0.236 Sum_probs=161.6
Q ss_pred EEEccCCccccc-CCccccCCCCCCCccEEEcCCCcCcCc----CCcccCCCCCCCEEEccCCcCcc------cCCcccC
Q 042476 30 LLDLSNNALSGS-IIHLICNGDNKSVIISLKLSKNYFSGD----IPDCWMNWPHLQVLNLDDNYFTG------NLPISIG 98 (433)
Q Consensus 30 ~L~l~~n~l~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~------~~p~~~~ 98 (433)
.|+|..+.+++. ....+ ..+..|+.|+++++.++.. ++..+...+.+++++++++.+.+ .++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~---~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELL---PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHH---HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 467777777743 22233 2366689999999887532 45556677788999998887762 2345677
Q ss_pred CCCCcCEEEccCCcccccCCccccCCCC---CcEEECcCcccccc----CChhhhhcC-CCccEEEeeCcccccc----C
Q 042476 99 TLSSLRSLHLRNNRLAGIFPVSLKNCSS---LISLDIGENDFFGS----IPTWVGERF-PRLLILNLRSNKFNGS----L 166 (433)
Q Consensus 99 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~~~~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~ 166 (433)
.+++|+.|++++|.+....+..+..+.. |++|++++|.+.+. +...+. .+ ++|+.|++++|.+++. +
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHH
Confidence 7888999999888887555555555544 88888888877421 222222 44 7888888888887732 3
Q ss_pred CccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeE
Q 042476 167 PVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRS 246 (433)
Q Consensus 167 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 246 (433)
...+..+++|++|++++|.+++.....+ .......++|+.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l----------------------------------------~~~l~~~~~L~~ 197 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRAL----------------------------------------AEGLKANCNLEV 197 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHH----------------------------------------HHHHHhCCCCCE
Confidence 3455667788888888887763111000 001111345777
Q ss_pred EEcccCccccc----CCccccCCccCceEeCcCcccccCCCcccC-----CCCCCCEEeCcCCcCCC----CCCccccCC
Q 042476 247 IDISKNNFSGE----IPMQLTNLEGLQTLNLSHNFFVGKIPENIG-----NMRSIESLDFSTNRLFG----RIPQSMSSL 313 (433)
Q Consensus 247 L~L~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~----~~~~~l~~l 313 (433)
|++++|.+++. ++..+..+++|+.|++++|.+++.....+. ..+.|+.|++++|.++. .+...+..+
T Consensus 198 L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~ 277 (319)
T cd00116 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK 277 (319)
T ss_pred EeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC
Confidence 77777776532 233455667788888888877643222221 23678888888887752 233445556
Q ss_pred CCCCeeeCcCCcCcc
Q 042476 314 SFLNHLNLSENDLSG 328 (433)
Q Consensus 314 ~~L~~L~L~~n~l~~ 328 (433)
++|+.+++++|.++.
T Consensus 278 ~~L~~l~l~~N~l~~ 292 (319)
T cd00116 278 ESLLELDLRGNKFGE 292 (319)
T ss_pred CCccEEECCCCCCcH
Confidence 778888888887764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.6e-18 Score=138.17 Aligned_cols=162 Identities=28% Similarity=0.539 Sum_probs=100.7
Q ss_pred CCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCE
Q 042476 99 TLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI 178 (433)
Q Consensus 99 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 178 (433)
++.++..|.+++|+++ .+|..+..+.+|+.|++.+|++ ..+|..+. .+++|++|+++-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi-e~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI-EELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh-hhcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence 4556666666777666 4455566666777777777766 46666665 5677777777766665 56777777777777
Q ss_pred EEccCCcCcc-cCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccccc
Q 042476 179 LDVAHNNLSG-TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGE 257 (433)
Q Consensus 179 L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 257 (433)
||+.+|++.+ .+|..|-.+ ..|+.|++++|.+. .
T Consensus 107 ldltynnl~e~~lpgnff~m--------------------------------------------~tlralyl~dndfe-~ 141 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYM--------------------------------------------TTLRALYLGDNDFE-I 141 (264)
T ss_pred hhccccccccccCCcchhHH--------------------------------------------HHHHHHHhcCCCcc-c
Confidence 7777776652 234333222 22445555566665 5
Q ss_pred CCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCcccc
Q 042476 258 IPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMS 311 (433)
Q Consensus 258 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 311 (433)
+|..++++++|+.|.+.+|.+. .+|.+++.+..|++|.+.+|+++ .+|..++
T Consensus 142 lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 5666666667777777666665 56666666666777777777665 3443333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.1e-18 Score=138.96 Aligned_cols=163 Identities=28% Similarity=0.511 Sum_probs=99.4
Q ss_pred CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccE
Q 042476 75 NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLI 154 (433)
Q Consensus 75 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 154 (433)
++.+++.|.|++|+++ .+|..+..+.+|+.|++++|.+. .+|.++..+++|+.|+++.|++ ..+|.+++ .++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfg-s~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFG-SFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccC-CCchhhh
Confidence 4455555566666665 44555555666666666666655 4555566666666666666655 35555555 4666666
Q ss_pred EEeeCcccc-ccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccc
Q 042476 155 LNLRSNKFN-GSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGL 233 (433)
Q Consensus 155 L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (433)
|++.+|++. ..+|..|-.++.|+.|+++.|.+. .+|..++++++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~---------------------------------- 151 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN---------------------------------- 151 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc----------------------------------
Confidence 666666555 235566666666666677766665 55555554433
Q ss_pred eeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCC
Q 042476 234 LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN 288 (433)
Q Consensus 234 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 288 (433)
|+.|.+..|.+. .+|..++.+..|++|.+.+|.++ .+|.++++
T Consensus 152 ----------lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 152 ----------LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred ----------eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 455555566555 56677777778888888888876 55655543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.56 E-value=8.8e-15 Score=147.74 Aligned_cols=116 Identities=36% Similarity=0.646 Sum_probs=102.3
Q ss_pred ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476 243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS 322 (433)
Q Consensus 243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 322 (433)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCc--ccCccCcccccCC-cCCCCCC-CCCC
Q 042476 323 ENDLSGQIPSST--QLQSFGASCFSGN-DLCGAPL-PDCT 358 (433)
Q Consensus 323 ~n~l~~~~p~~~--~~~~l~~~~~~~n-~l~~~~~-~~c~ 358 (433)
+|+++|.+|... ....+..+++.+| .+|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 1234556788888 7887653 2553
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=9.2e-14 Score=130.52 Aligned_cols=196 Identities=24% Similarity=0.400 Sum_probs=146.0
Q ss_pred CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccE
Q 042476 75 NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLI 154 (433)
Q Consensus 75 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 154 (433)
.+..-...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+.++..|+.|+++.|++ ..+|..++ .--|+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC--~lpLkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLC--DLPLKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhh--cCccee
Confidence 3444556788888888 78888888888888899998888 6778888899999999999988 68888886 456888
Q ss_pred EEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccce
Q 042476 155 LNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLL 234 (433)
Q Consensus 155 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (433)
|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..+..+.+|+
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr--------------------------------- 192 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLR--------------------------------- 192 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHH---------------------------------
Confidence 888888887 67888888888888888888887 6666666655544
Q ss_pred eehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccC--
Q 042476 235 VEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSS-- 312 (433)
Q Consensus 235 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-- 312 (433)
.|.+..|+.. .+|..+.. =.|..||++.|++. .+|-.|..|..|++|.|.+|.+. ..|..++.
T Consensus 193 -----------~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kG 257 (722)
T KOG0532|consen 193 -----------DLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKG 257 (722)
T ss_pred -----------HHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcc
Confidence 3444455554 45556653 46778888888887 78888888888888888888886 44444432
Q ss_pred -CCCCCeeeCcCCc
Q 042476 313 -LSFLNHLNLSEND 325 (433)
Q Consensus 313 -l~~L~~L~L~~n~ 325 (433)
..=.++|+..-|+
T Consensus 258 kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 258 KVHIFKYLSTQACQ 271 (722)
T ss_pred ceeeeeeecchhcc
Confidence 2235666766664
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.2e-11 Score=119.33 Aligned_cols=199 Identities=33% Similarity=0.482 Sum_probs=120.6
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCC-CCcEEECcCccccccCChhhhhcCCCccEEEeeC
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCS-SLISLDIGENDFFGSIPTWVGERFPRLLILNLRS 159 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 159 (433)
.+++..+.+.. ....+..++.++.|.+.+|.++ .++....... +|+.|++++|.+ ..+|..+. .+++|+.|+++.
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~-~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI-ESLPSPLR-NLPNLKNLDLSF 172 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccch-hhhhhhhh-ccccccccccCC
Confidence 46666666542 2233444567777777777776 3444444553 777777777777 45554444 577777777777
Q ss_pred ccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhh
Q 042476 160 NKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNS 239 (433)
Q Consensus 160 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (433)
|++. .++......++|+.|++++|.+. .+|......
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~------------------------------------------ 208 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL------------------------------------------ 208 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhh------------------------------------------
Confidence 7776 44544446677777777777776 454433222
Q ss_pred hccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCee
Q 042476 240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHL 319 (433)
Q Consensus 240 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 319 (433)
..|+++.+++|.+. ..+..+.++.++..+.+.+|++. ..+..++.+++++.|++++|.++...+ +....+++.+
T Consensus 209 --~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L 282 (394)
T COG4886 209 --SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLREL 282 (394)
T ss_pred --hhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEE
Confidence 23555555555433 33444556666666666666665 335556666667777777777753333 6666777777
Q ss_pred eCcCCcCcccCCCC
Q 042476 320 NLSENDLSGQIPSS 333 (433)
Q Consensus 320 ~L~~n~l~~~~p~~ 333 (433)
++++|.++..+|..
T Consensus 283 ~~s~n~~~~~~~~~ 296 (394)
T COG4886 283 DLSGNSLSNALPLI 296 (394)
T ss_pred eccCccccccchhh
Confidence 77777766554433
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=2.6e-11 Score=117.18 Aligned_cols=200 Identities=30% Similarity=0.523 Sum_probs=140.0
Q ss_pred EEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCC-CcCEEEccCCcccccCCccccCCCCCcEEECcCc
Q 042476 57 SLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLS-SLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN 135 (433)
Q Consensus 57 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 135 (433)
.+++..+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466766666322 223345578899999999988 5666666664 8999999999988 45566788999999999999
Q ss_pred cccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccc
Q 042476 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYF 215 (433)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 215 (433)
++ ..+|.... ..++|+.|++++|.+. .+|........|+++.+++|... ..+..+..+.+
T Consensus 174 ~l-~~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~---------------- 233 (394)
T COG4886 174 DL-SDLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN---------------- 233 (394)
T ss_pred hh-hhhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc----------------
Confidence 98 46666654 5789999999999988 56665556667899999988643 33334444333
Q ss_pred ccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEE
Q 042476 216 VTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESL 295 (433)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 295 (433)
+..+.+.+|.+. ..+..++.+++++.|++++|.++ .++. ++.+.+++.|
T Consensus 234 ----------------------------l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L 282 (394)
T COG4886 234 ----------------------------LSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLREL 282 (394)
T ss_pred ----------------------------ccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEE
Confidence 344445555554 22455667777888888888876 3333 6777788888
Q ss_pred eCcCCcCCCCCCccc
Q 042476 296 DFSTNRLFGRIPQSM 310 (433)
Q Consensus 296 ~Ls~n~l~~~~~~~l 310 (433)
++++|.++..++...
T Consensus 283 ~~s~n~~~~~~~~~~ 297 (394)
T COG4886 283 DLSGNSLSNALPLIA 297 (394)
T ss_pred eccCccccccchhhh
Confidence 888887776555443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=4.1e-13 Score=126.24 Aligned_cols=194 Identities=29% Similarity=0.416 Sum_probs=134.0
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
+.--...|++.|++. .+|..+..+..|+.+.|..|.+. .+|.++.++..|.+|+++.|.++ .+|..+..+ -|+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence 444556777777776 56777777777777777777777 67777777888888888888776 566666555 477777
Q ss_pred CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476 132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA 211 (433)
Q Consensus 132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~ 211 (433)
+++|++ +.+|..+. .+..|.+|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..++
T Consensus 150 ~sNNkl-~~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------- 212 (722)
T KOG0532|consen 150 VSNNKL-TSLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------- 212 (722)
T ss_pred EecCcc-ccCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence 787777 57777777 6777888888887776 56777777778888877777776 4554433221
Q ss_pred ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCC--
Q 042476 212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM-- 289 (433)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-- 289 (433)
|..||++.|++. .+|..|.+|+.|++|-|.+|.+. ..|..++..
T Consensus 213 --------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk 258 (722)
T KOG0532|consen 213 --------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK 258 (722)
T ss_pred --------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc
Confidence 567777777777 67777778888888888888776 334333222
Q ss_pred -CCCCEEeCcCC
Q 042476 290 -RSIESLDFSTN 300 (433)
Q Consensus 290 -~~L~~L~Ls~n 300 (433)
.=-+.|+..-|
T Consensus 259 VHIFKyL~~qA~ 270 (722)
T KOG0532|consen 259 VHIFKYLSTQAC 270 (722)
T ss_pred eeeeeeecchhc
Confidence 22344555555
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=1.3e-12 Score=116.14 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=54.3
Q ss_pred hhhccceeEEEcccCccccc----CCccccCCccCceEeCcCcccccCCCccc-----CCCCCCCEEeCcCCcCCCC---
Q 042476 238 NSILNLVRSIDISKNNFSGE----IPMQLTNLEGLQTLNLSHNFFVGKIPENI-----GNMRSIESLDFSTNRLFGR--- 305 (433)
Q Consensus 238 ~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~--- 305 (433)
+..++.|+.|||.+|.++.. +...+..+++|+.|++++|.+......++ ...|+|+.|.+.+|.++..
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 34466677777777776532 33345566677777777777654433332 2256777777777776532
Q ss_pred -CCccccCCCCCCeeeCcCCcCc
Q 042476 306 -IPQSMSSLSFLNHLNLSENDLS 327 (433)
Q Consensus 306 -~~~~l~~l~~L~~L~L~~n~l~ 327 (433)
+...+...+.|+.|+|++|.+.
T Consensus 289 ~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 289 ALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHhcchhhHHhcCCccccc
Confidence 2233444566777777777763
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.5e-12 Score=115.74 Aligned_cols=209 Identities=22% Similarity=0.230 Sum_probs=106.1
Q ss_pred CCCCCCEEEccCCcCcccCC--cccCCCCCcCEEEccCCccccc--CCccccCCCCCcEEECcCccccccCChhhhhcCC
Q 042476 75 NWPHLQVLNLDDNYFTGNLP--ISIGTLSSLRSLHLRNNRLAGI--FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP 150 (433)
Q Consensus 75 ~l~~L~~L~L~~n~i~~~~p--~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 150 (433)
++.+|+++.|.++.+. ..+ .....+++++.|+|++|-+... +......+++|+.|+++.|++.-.........++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4455666666655554 222 1334456666666666655422 1122345566666666666552222222222345
Q ss_pred CccEEEeeCcccccc-CCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceee
Q 042476 151 RLLILNLRSNKFNGS-LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVV 229 (433)
Q Consensus 151 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 229 (433)
+|+.|.++.|.++-. +...+..+|+|+.|++..|........
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~------------------------------------- 240 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT------------------------------------- 240 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-------------------------------------
Confidence 566666666655511 112234455566666655531100000
Q ss_pred eccceeehhhhccceeEEEcccCccccc-CCccccCCccCceEeCcCcccccC-CCcc-----cCCCCCCCEEeCcCCcC
Q 042476 230 TKGLLVEYNSILNLVRSIDISKNNFSGE-IPMQLTNLEGLQTLNLSHNFFVGK-IPEN-----IGNMRSIESLDFSTNRL 302 (433)
Q Consensus 230 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-----l~~l~~L~~L~Ls~n~l 302 (433)
....++.|++|+|++|.+... .-...+.++.|+.|+++.+.+... .|+. ...+++|+.|+++.|++
T Consensus 241 -------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 241 -------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred -------hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 011234466777777665421 123456677777777777776532 2221 24457778888887777
Q ss_pred CCC-CCccccCCCCCCeeeCcCCcCcc
Q 042476 303 FGR-IPQSMSSLSFLNHLNLSENDLSG 328 (433)
Q Consensus 303 ~~~-~~~~l~~l~~L~~L~L~~n~l~~ 328 (433)
... --..+..+++|+.|.+..|.++.
T Consensus 314 ~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 314 RDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccccchhhccchhhhhhcccccccc
Confidence 421 11234455667777777777653
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=1.4e-10 Score=117.35 Aligned_cols=108 Identities=33% Similarity=0.485 Sum_probs=78.4
Q ss_pred CCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEee
Q 042476 79 LQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLR 158 (433)
Q Consensus 79 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 158 (433)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECc
Confidence 56677777777777777777777777777777777777777777777777777777777777777666 67777777777
Q ss_pred CccccccCCccccCC-CCcCEEEccCCcCc
Q 042476 159 SNKFNGSLPVQLCHL-TFLRILDVAHNNLS 187 (433)
Q Consensus 159 ~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~ 187 (433)
+|.+.+.+|..+... .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 777777777766543 35566777766543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=8.8e-12 Score=113.90 Aligned_cols=208 Identities=22% Similarity=0.213 Sum_probs=128.1
Q ss_pred CCCCCcCEEEccCCcccccCC--ccccCCCCCcEEECcCccccccC-ChhhhhcCCCccEEEeeCccccccCCc-cccCC
Q 042476 98 GTLSSLRSLHLRNNRLAGIFP--VSLKNCSSLISLDIGENDFFGSI-PTWVGERFPRLLILNLRSNKFNGSLPV-QLCHL 173 (433)
Q Consensus 98 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l 173 (433)
+++.+|+.+.|.++.+. ..+ .....|++++.|||+.|-+..-. -..+.+.+++|+.|+++.|.+...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 35667777777777655 222 24556777777777777552111 123334677777777777776522111 11234
Q ss_pred CCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCc
Q 042476 174 TFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNN 253 (433)
Q Consensus 174 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 253 (433)
+.|+.|.++.|.++. .........++.|+.|+|..|.
T Consensus 197 ~~lK~L~l~~CGls~-------------------------------------------k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW-------------------------------------------KDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhheEEeccCCCCH-------------------------------------------HHHHHHHHhCCcHHHhhhhccc
Confidence 556666666666541 1111223347788999999985
Q ss_pred ccccCCccccCCccCceEeCcCcccccCC-CcccCCCCCCCEEeCcCCcCCCC-CCcc-----ccCCCCCCeeeCcCCcC
Q 042476 254 FSGEIPMQLTNLEGLQTLNLSHNFFVGKI-PENIGNMRSIESLDFSTNRLFGR-IPQS-----MSSLSFLNHLNLSENDL 326 (433)
Q Consensus 254 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l 326 (433)
...........++.|++|+|++|++.... ....+.++.|..|+++.|.+... .|+. ....++|+.|++..|++
T Consensus 234 ~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 234 IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 43333444556789999999999986332 13467899999999999988753 3443 45678999999999999
Q ss_pred cccCCCC---cccCccCcccccCCcCC
Q 042476 327 SGQIPSS---TQLQSFGASCFSGNDLC 350 (433)
Q Consensus 327 ~~~~p~~---~~~~~l~~~~~~~n~l~ 350 (433)
.. .+.. ..+.++..+.+.+|.+.
T Consensus 314 ~~-w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 314 RD-WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cc-ccccchhhccchhhhhhccccccc
Confidence 53 2322 33344455555555544
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=3.8e-12 Score=113.13 Aligned_cols=238 Identities=21% Similarity=0.248 Sum_probs=157.1
Q ss_pred CCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCc---CcCcCCc-------ccCCCCCCCEEEccCCcCcccC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNY---FSGDIPD-------CWMNWPHLQVLNLDDNYFTGNL 93 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~---l~~~~~~-------~~~~l~~L~~L~L~~n~i~~~~ 93 (433)
+.+++.+++++|.|.......++.. ...+.|+..+++.-. ....+|. ++..+++|++++||+|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 6689999999999986655555444 456788888887542 2233443 3456789999999999988655
Q ss_pred Ccc----cCCCCCcCEEEccCCccccc-------------CCccccCCCCCcEEECcCccccccCCh----hhhhcCCCc
Q 042476 94 PIS----IGTLSSLRSLHLRNNRLAGI-------------FPVSLKNCSSLISLDIGENDFFGSIPT----WVGERFPRL 152 (433)
Q Consensus 94 p~~----~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~l~~L 152 (433)
+.. +..+..|++|.|.+|.+... .......-+.|++++...|++ +.-+. ..+...+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHHHHHHhcccc
Confidence 544 35678999999999987521 112234567899999999887 33332 233456889
Q ss_pred cEEEeeCcccccc----CCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeeccee
Q 042476 153 LILNLRSNKFNGS----LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASV 228 (433)
Q Consensus 153 ~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 228 (433)
+.+.+..|.+... +..++..+++|++|||..|-++..-...+
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L---------------------------------- 233 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL---------------------------------- 233 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH----------------------------------
Confidence 9999998887622 23467788999999999988763211111
Q ss_pred eeccceeehhhhccceeEEEcccCcccccCCcc----c-cCCccCceEeCcCcccccC----CCcccCCCCCCCEEeCcC
Q 042476 229 VTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ----L-TNLEGLQTLNLSHNFFVGK----IPENIGNMRSIESLDFST 299 (433)
Q Consensus 229 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~----~-~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~ 299 (433)
...++.++.|+.|++++|.+...-... + ...++|+.|.+.+|.++.. +...+...|.|..|+|++
T Consensus 234 ------akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 234 ------AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred ------HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 112223555777777777764322111 1 2357888888888887633 223345578888999999
Q ss_pred CcCC
Q 042476 300 NRLF 303 (433)
Q Consensus 300 n~l~ 303 (433)
|++.
T Consensus 308 N~l~ 311 (382)
T KOG1909|consen 308 NRLG 311 (382)
T ss_pred cccc
Confidence 9883
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=2.6e-11 Score=105.69 Aligned_cols=130 Identities=24% Similarity=0.288 Sum_probs=92.8
Q ss_pred CCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceee
Q 042476 150 PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVV 229 (433)
Q Consensus 150 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 229 (433)
..|+++||++|.++ .+..++.-++.++.|+++.|.+... +++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-----~nL-------------------------------- 325 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-----QNL-------------------------------- 325 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-----hhh--------------------------------
Confidence 45788888888887 5667777778888888888887621 111
Q ss_pred eccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCC-CCc
Q 042476 230 TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGR-IPQ 308 (433)
Q Consensus 230 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~ 308 (433)
..+++|+.|||++|.++ .+..+-..+-++++|.|++|.+.. -.-++.+.+|..||+++|++... --.
T Consensus 326 ---------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~ 393 (490)
T KOG1259|consen 326 ---------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVN 393 (490)
T ss_pred ---------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhc
Confidence 12456788888888876 333444567788899999988752 22356677889999999988543 234
Q ss_pred cccCCCCCCeeeCcCCcCccc
Q 042476 309 SMSSLSFLNHLNLSENDLSGQ 329 (433)
Q Consensus 309 ~l~~l~~L~~L~L~~n~l~~~ 329 (433)
.+++++-|+.+.|.+|++.+.
T Consensus 394 ~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ccccccHHHHHhhcCCCcccc
Confidence 678888889999999988853
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.5e-10 Score=96.47 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=7.5
Q ss_pred CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCc
Q 042476 53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT 90 (433)
Q Consensus 53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 90 (433)
.+|+.|++++|.++.. +.+..++.|++|++++|.++
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS---
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC
Confidence 3444444444444421 12333444444444444444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2.5e-10 Score=95.15 Aligned_cols=81 Identities=31% Similarity=0.396 Sum_probs=15.0
Q ss_pred CCCccEEEcCCCcCcCcCCcccC-CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccc-cCCCCCcE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWM-NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSL-KNCSSLIS 129 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 129 (433)
..++++|+|++|.|+.+ +.+. .+.+|+.|++++|.++. +. .+..+++|+.|++++|.|+.+ ...+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 33445555555555422 1222 34445555555555552 11 234444555555555555432 1122 23445555
Q ss_pred EECcCccc
Q 042476 130 LDIGENDF 137 (433)
Q Consensus 130 L~L~~n~~ 137 (433)
|++++|++
T Consensus 93 L~L~~N~I 100 (175)
T PF14580_consen 93 LYLSNNKI 100 (175)
T ss_dssp EE-TTS--
T ss_pred EECcCCcC
Confidence 55555544
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=1.8e-10 Score=119.36 Aligned_cols=278 Identities=21% Similarity=0.214 Sum_probs=167.0
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCc--CcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNY--FSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS 102 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~ 102 (433)
....+.+.+.+|.+... +.. ..+++|++|-+..|. +....++.|..|+.|++|||++|.-.+.+|..++.+-+
T Consensus 522 ~~~~rr~s~~~~~~~~~-~~~----~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHI-AGS----SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred hhheeEEEEeccchhhc-cCC----CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 44677777777776432 222 336688888888885 55555666888999999999988777789999999999
Q ss_pred cCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccc--ccCCccccCCCCcCEEE
Q 042476 103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN--GSLPVQLCHLTFLRILD 180 (433)
Q Consensus 103 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~ 180 (433)
||+|+++++.+. .+|..++++..|.+|++..+.....+ +.+...+.+|++|.+...... ...-..+.++++|+.+.
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 999999999988 78889999999999999988764455 444436899999988765422 11122334455555554
Q ss_pred ccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCc
Q 042476 181 VAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPM 260 (433)
Q Consensus 181 l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 260 (433)
...... .+-..+..+..|..+...... ..............+.+|+.|.+.++.+......
T Consensus 675 ~~~~s~--~~~e~l~~~~~L~~~~~~l~~-----------------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 675 ITISSV--LLLEDLLGMTRLRSLLQSLSI-----------------EGCSKRTLISSLGSLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred eecchh--HhHhhhhhhHHHHHHhHhhhh-----------------cccccceeecccccccCcceEEEEcCCCchhhcc
Confidence 432222 111112233333222111100 0011122233344567788888888877533221
Q ss_pred cccC------CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCccc
Q 042476 261 QLTN------LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQ 329 (433)
Q Consensus 261 ~~~~------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 329 (433)
.... ++++..+...++... ..+.+....++|+.|.+..+...+.+......+..++.+-+..+.+.+.
T Consensus 736 ~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 736 WEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred cccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 1111 223444433333322 2222233457888888888877666666566666666666666666553
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=7.6e-10 Score=75.86 Aligned_cols=59 Identities=37% Similarity=0.520 Sum_probs=31.3
Q ss_pred CccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCc
Q 042476 54 VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNR 112 (433)
Q Consensus 54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~ 112 (433)
+|++|++++|+++...++.|.++++|++|++++|.+....|.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444455555555555555555554444455555555555555554
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=4.3e-10 Score=98.22 Aligned_cols=134 Identities=26% Similarity=0.311 Sum_probs=99.7
Q ss_pred ccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccc
Q 042476 121 LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAM 200 (433)
Q Consensus 121 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 200 (433)
+..-+.|+++|+++|.+ ..+...+- -.|.++.|++++|.+... +.+..+++|+.||+++|.++ .+..+-.
T Consensus 280 ~dTWq~LtelDLS~N~I-~~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~----- 349 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLI-TQIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHL----- 349 (490)
T ss_pred cchHhhhhhccccccch-hhhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHh-----
Confidence 33456789999999988 45655554 579999999999999843 45889999999999999886 2222111
Q ss_pred cccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCccccc
Q 042476 201 ATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG 280 (433)
Q Consensus 201 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 280 (433)
.+-+++.|.|++|.+... ..+..+-+|..||+++|++..
T Consensus 350 ---------------------------------------KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 350 ---------------------------------------KLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred ---------------------------------------hhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhh
Confidence 134577888888887522 345666788999999999863
Q ss_pred C-CCcccCCCCCCCEEeCcCCcCCCC
Q 042476 281 K-IPENIGNMRSIESLDFSTNRLFGR 305 (433)
Q Consensus 281 ~-~~~~l~~l~~L~~L~Ls~n~l~~~ 305 (433)
. -...++++|-|+.+.|.+|.+.+.
T Consensus 389 ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 389 LDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred HHHhcccccccHHHHHhhcCCCcccc
Confidence 2 235688999999999999999743
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.6e-09 Score=74.28 Aligned_cols=61 Identities=36% Similarity=0.542 Sum_probs=45.4
Q ss_pred CCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccc
Q 042476 77 PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF 137 (433)
Q Consensus 77 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 137 (433)
++|++|++++|++....+..|.++++|++|++++|.+..+.+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777765556777777788888877777777777777777777777777753
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=2e-09 Score=111.60 Aligned_cols=132 Identities=23% Similarity=0.218 Sum_probs=100.5
Q ss_pred CCCccEEEccCCc--ccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476 25 PFEFGLLDLSNNA--LSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS 102 (433)
Q Consensus 25 ~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~ 102 (433)
++.|++|-+.+|. +. .++..|+ ..++.|++|||++|.--+.+|..++.+-+|++|++++..+. .+|..+.+++.
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff--~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFF--RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK 619 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHH--hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence 5679999999996 44 3433332 55999999999998766789999999999999999999999 89999999999
Q ss_pred cCEEEccCCcccccCCccccCCCCCcEEECcCccc--cccCChhhhhcCCCccEEEeeCcc
Q 042476 103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDF--FGSIPTWVGERFPRLLILNLRSNK 161 (433)
Q Consensus 103 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~l~~L~~L~L~~n~ 161 (433)
|.+|++..+.-...+|.....+++|++|.+..... ....-..+ ..+.+|+.+......
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISS 679 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecch
Confidence 99999998876556677777899999999876531 11122222 256666666654433
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=1.1e-09 Score=106.18 Aligned_cols=245 Identities=22% Similarity=0.239 Sum_probs=127.5
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
+..++.+.+..|.++. +-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.|+.+. .+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 4555666666666653 22334556667777777777663 3333556677777777777776442 345566677777
Q ss_pred CcCccccccCChhhhhcCCCccEEEeeCccccccCC-ccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccc
Q 042476 132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP-VQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN 210 (433)
Q Consensus 132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~ 210 (433)
+++|.+. .+. ++. .+++|+.+++++|.+...-+ . ...+.+++.+++.+|.+...- .+..+..+..+++..+..
T Consensus 147 l~~N~i~-~~~-~~~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 147 LSGNLIS-DIS-GLE-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eccCcch-hcc-CCc-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccc
Confidence 7777662 222 211 36677777777777663322 1 456666777777776664211 111222222111111110
Q ss_pred cccccccCCceeeecceeeeccceeehhhhcc--ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCC
Q 042476 211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSILN--LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN 288 (433)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 288 (433)
.. ........ .|+.+++++|.+.. .+..+..+..+..|++.+|++... ..+..
T Consensus 221 ~~----------------------~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~ 275 (414)
T KOG0531|consen 221 SK----------------------LEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLER 275 (414)
T ss_pred ee----------------------ccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccc
Confidence 00 00000011 25666777777652 224455666777777777776522 12334
Q ss_pred CCCCCEEeCcCCcCCCC---CCcc-ccCCCCCCeeeCcCCcCcccCC
Q 042476 289 MRSIESLDFSTNRLFGR---IPQS-MSSLSFLNHLNLSENDLSGQIP 331 (433)
Q Consensus 289 l~~L~~L~Ls~n~l~~~---~~~~-l~~l~~L~~L~L~~n~l~~~~p 331 (433)
.+.+..+....|.+... .... ....+.++.+.+.+|+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 45566666666655421 1111 3445667777777776665433
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.1e-09 Score=106.06 Aligned_cols=241 Identities=23% Similarity=0.262 Sum_probs=153.0
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
.+.++.++...+.+....-. ...+..++.+.+..|.+.. +-..+..+++|+.|++.+|.|..+. ..+..+++|++|+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ 124 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLD 124 (414)
T ss_pred cchhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchhee
Confidence 34555556555544322111 1456677788888888883 3445778899999999999998543 3367899999999
Q ss_pred CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476 132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA 211 (433)
Q Consensus 132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~ 211 (433)
+++|.+. .+..- . .++.|+.|++.+|.+... ..+..+++|+.+++++|.+...-+.....+.+++.+.+..+...
T Consensus 125 ls~N~I~-~i~~l-~-~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 125 LSFNKIT-KLEGL-S-TLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccccccc-cccch-h-hccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 9999994 33222 2 577899999999999843 45666899999999999997433310355666666666555311
Q ss_pred ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc--cCceEeCcCcccccCCCcccCCC
Q 042476 212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE--GLQTLNLSHNFFVGKIPENIGNM 289 (433)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~l~~l 289 (433)
.. .....+..+..+++..|.++..-+. ..+. +|+.+++++|.+. ..+..+..+
T Consensus 200 ~i----------------------~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~ 254 (414)
T KOG0531|consen 200 EI----------------------EGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGNRIS-RSPEGLENL 254 (414)
T ss_pred cc----------------------cchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcccCccc-ccccccccc
Confidence 10 1111122344446667776533221 1222 3788888888876 333455666
Q ss_pred CCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCc
Q 042476 290 RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327 (433)
Q Consensus 290 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 327 (433)
..+..|++.+|++...- .+.....+..+....|++.
T Consensus 255 ~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 255 KNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence 77888888888775321 2334455666666666655
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=8.1e-10 Score=96.46 Aligned_cols=60 Identities=22% Similarity=0.224 Sum_probs=30.9
Q ss_pred hhccceeEEEcccCcc-cccCCccccCCccCceEeCcCcccccCCCcc---cCCCCCCCEEeCcCC
Q 042476 239 SILNLVRSIDISKNNF-SGEIPMQLTNLEGLQTLNLSHNFFVGKIPEN---IGNMRSIESLDFSTN 300 (433)
Q Consensus 239 ~~~~~L~~L~L~~n~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~Ls~n 300 (433)
..+++|.+|||++|.. +......|.+++.|++|.++.|.. .+|+. +...|+|.+||+-++
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 3456666666666543 222233445556666666666652 23332 344556666665544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=3.8e-09 Score=102.69 Aligned_cols=113 Identities=29% Similarity=0.350 Sum_probs=87.7
Q ss_pred ehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCC
Q 042476 236 EYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSF 315 (433)
Q Consensus 236 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 315 (433)
..+..++.++.|+|++|+++... .+..+++|++|||+.|.+. .+|..-..-..|+.|++++|.++.. ..+.++.+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhh
Confidence 34556778999999999998543 6778999999999999997 5554322224599999999998643 34678899
Q ss_pred CCeeeCcCCcCcc--cCCCCcccCccCcccccCCcCCCCC
Q 042476 316 LNHLNLSENDLSG--QIPSSTQLQSFGASCFSGNDLCGAP 353 (433)
Q Consensus 316 L~~L~L~~n~l~~--~~p~~~~~~~l~~~~~~~n~l~~~~ 353 (433)
|+.||+++|-+.+ .+...+.+..+..+.+.||++|..|
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999999998875 3445577788888999999998764
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=3.2e-08 Score=86.61 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=49.5
Q ss_pred ccceeEEEcccCcccc-cCCccccCCccCceEeCcCcccccC-CCcccCCCCCCCEEeCcCCcCCCCCCc------cccC
Q 042476 241 LNLVRSIDISKNNFSG-EIPMQLTNLEGLQTLNLSHNFFVGK-IPENIGNMRSIESLDFSTNRLFGRIPQ------SMSS 312 (433)
Q Consensus 241 ~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~------~l~~ 312 (433)
++++..+.+..|.+.. .....+..++.+..|+|+.|++... -.+++..+++|..|.++++.+...+.. .++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 5566666666665421 2233445556667788888887422 335577788888888888877643321 2355
Q ss_pred CCCCCeeeCc
Q 042476 313 LSFLNHLNLS 322 (433)
Q Consensus 313 l~~L~~L~L~ 322 (433)
+++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 6666665543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=2.4e-08 Score=97.30 Aligned_cols=126 Identities=22% Similarity=0.250 Sum_probs=91.3
Q ss_pred CCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEE
Q 042476 77 PHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILN 156 (433)
Q Consensus 77 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 156 (433)
..|.+.+.++|.+. ....++.-++.|++|+|++|+++.. +.+..++.|++|||++|.+ ..+|..-..++. |+.|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchh-ccccccchhhhh-heeee
Confidence 35777788888887 5667777788899999999998754 3788899999999999988 466554333444 89999
Q ss_pred eeCccccccCCccccCCCCcCEEEccCCcCcccCC-CCcccccccccccccccc
Q 042476 157 LRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIP-RCINNFTAMATINSSNQK 209 (433)
Q Consensus 157 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~~~ 209 (433)
+++|.++.. ..+.++.+|+.||+++|-+.+.-. ..+..+..|..|.+.+|.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 999988733 356788889999999988763211 123455666666666554
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=9.9e-08 Score=82.58 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=53.3
Q ss_pred ccceeEEEcccCccccc----CCccccCCccCceEeCcCcccccCCCccc------CCCCCCCEEeCcCCcCCCCCCcc-
Q 042476 241 LNLVRSIDISKNNFSGE----IPMQLTNLEGLQTLNLSHNFFVGKIPENI------GNMRSIESLDFSTNRLFGRIPQS- 309 (433)
Q Consensus 241 ~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l------~~l~~L~~L~Ls~n~l~~~~~~~- 309 (433)
+.+|+.||+..|.++.. +...+..++.|+.|.+.+|-++.....++ ...|+|+.|-..+|...+.+-..
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~ 292 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI 292 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee
Confidence 55678888888877632 23345566778888888887765544332 12478888888888765432111
Q ss_pred c------cCCCCCCeeeCcCCcCc
Q 042476 310 M------SSLSFLNHLNLSENDLS 327 (433)
Q Consensus 310 l------~~l~~L~~L~L~~n~l~ 327 (433)
+ ..++-|..+.+.+|++.
T Consensus 293 ~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 293 SLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred chhhhhhcccHHHHHHHHccCcch
Confidence 1 23455555666666655
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=2.6e-07 Score=80.01 Aligned_cols=236 Identities=17% Similarity=0.183 Sum_probs=140.5
Q ss_pred CCCCCEEEccCCcCcccC----CcccCCCCCcCEEEccCCccc---c-------cCCccccCCCCCcEEECcCccccccC
Q 042476 76 WPHLQVLNLDDNYFTGNL----PISIGTLSSLRSLHLRNNRLA---G-------IFPVSLKNCSSLISLDIGENDFFGSI 141 (433)
Q Consensus 76 l~~L~~L~L~~n~i~~~~----p~~~~~l~~L~~L~L~~n~l~---~-------~~~~~~~~l~~L~~L~L~~n~~~~~~ 141 (433)
+..++.++|++|.|...- ...+.+-.+|+..+++.-... . .+-.++.+||.|+..+|++|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455666666666665322 222344456666655543211 1 12234557788888888888775555
Q ss_pred Chhhh---hcCCCccEEEeeCcccccc----CCc---------cccCCCCcCEEEccCCcCcccCCCCcccccccccccc
Q 042476 142 PTWVG---ERFPRLLILNLRSNKFNGS----LPV---------QLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINS 205 (433)
Q Consensus 142 ~~~~~---~~l~~L~~L~L~~n~l~~~----~~~---------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 205 (433)
|..+. ++-+.|++|.+++|.+... +.. -...-|.|++..+..|++. ..|....
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~---------- 177 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELS---------- 177 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHH----------
Confidence 54433 3556788888888876521 111 1234567888888888875 2221110
Q ss_pred ccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccccc-----CCccccCCccCceEeCcCccccc
Q 042476 206 SNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGE-----IPMQLTNLEGLQTLNLSHNFFVG 280 (433)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-----~~~~~~~l~~L~~L~Ls~n~l~~ 280 (433)
...+..-.+|..+.+..|.|... .-..+..+++|+.|||.+|-++.
T Consensus 178 -----------------------------a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 178 -----------------------------AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred -----------------------------HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 00011123578888888887533 11123567899999999999874
Q ss_pred CC----CcccCCCCCCCEEeCcCCcCCCCCCccc------cCCCCCCeeeCcCCcCcccCCCC--------cccCccCcc
Q 042476 281 KI----PENIGNMRSIESLDFSTNRLFGRIPQSM------SSLSFLNHLNLSENDLSGQIPSS--------TQLQSFGAS 342 (433)
Q Consensus 281 ~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l------~~l~~L~~L~L~~n~l~~~~p~~--------~~~~~l~~~ 342 (433)
.. ...+...+.|..|.+..|-++..-...+ ...++|..|-..+|...+.+-.. +.++.+..+
T Consensus 229 ~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l 308 (388)
T COG5238 229 EGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL 308 (388)
T ss_pred hhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH
Confidence 42 3445566789999999998865432221 13477888888898876533222 445556667
Q ss_pred cccCCcCCC
Q 042476 343 CFSGNDLCG 351 (433)
Q Consensus 343 ~~~~n~l~~ 351 (433)
+..||.+..
T Consensus 309 e~ngNr~~E 317 (388)
T COG5238 309 ERNGNRIKE 317 (388)
T ss_pred HHccCcchh
Confidence 778887654
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.5e-08 Score=88.60 Aligned_cols=179 Identities=14% Similarity=0.120 Sum_probs=100.4
Q ss_pred CCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCc-Ccc-cCCCCcccccccccc
Q 042476 126 SLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN-LSG-TIPRCINNFTAMATI 203 (433)
Q Consensus 126 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~p~~~~~l~~L~~L 203 (433)
.|++|||+...++..--..+.+.+.+|+.|.+.++.+...+...+++-.+|+.|+++.+. ++. ...-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477778777766544445555567777888887777776666667777778888777653 221 011134566667777
Q ss_pred ccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccc---ccCCccccCCccCceEeCcCccc-c
Q 042476 204 NSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS---GEIPMQLTNLEGLQTLNLSHNFF-V 279 (433)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~Ls~n~l-~ 279 (433)
+++.|+...+.. ....-..-++|+.|+++|+.-. ..+..-...+++|..|||++|.. +
T Consensus 266 NlsWc~l~~~~V------------------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 266 NLSWCFLFTEKV------------------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred CchHhhccchhh------------------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 766665221110 0000111234566666665421 11111224567777777777653 3
Q ss_pred cCCCcccCCCCCCCEEeCcCCcCCCCCCcc---ccCCCCCCeeeCcCC
Q 042476 280 GKIPENIGNMRSIESLDFSTNRLFGRIPQS---MSSLSFLNHLNLSEN 324 (433)
Q Consensus 280 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L~~n 324 (433)
.....+|..++.|++|.++.|.. .+|.. +...++|.+||+.++
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred chHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 33334456667777777777753 44443 345566777776654
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=8.8e-08 Score=74.32 Aligned_cols=90 Identities=28% Similarity=0.306 Sum_probs=45.5
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
..+|+..+|++|.+....+..-..++.+++|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 345555555555555222222223345555555555555 45555555555555555555555 3444444455555555
Q ss_pred CcCccccccCChh
Q 042476 132 IGENDFFGSIPTW 144 (433)
Q Consensus 132 L~~n~~~~~~~~~ 144 (433)
..+|.. ..+|..
T Consensus 130 s~~na~-~eid~d 141 (177)
T KOG4579|consen 130 SPENAR-AEIDVD 141 (177)
T ss_pred CCCCcc-ccCcHH
Confidence 555544 344433
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=1.9e-07 Score=72.53 Aligned_cols=86 Identities=28% Similarity=0.440 Sum_probs=64.3
Q ss_pred ceeEEEcccCcccccCCccc-cCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476 243 LVRSIDISKNNFSGEIPMQL-TNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL 321 (433)
Q Consensus 243 ~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 321 (433)
.|+..+|++|.+. .+|..| ..++.++.|+|++|.++ .+|.++..++.|+.|++++|.+. ..|..+..+.++..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3677788888887 444444 34567888888888887 77888888888899999888885 56666666888888888
Q ss_pred cCCcCcccCCC
Q 042476 322 SENDLSGQIPS 332 (433)
Q Consensus 322 ~~n~l~~~~p~ 332 (433)
.+|... .+|.
T Consensus 131 ~~na~~-eid~ 140 (177)
T KOG4579|consen 131 PENARA-EIDV 140 (177)
T ss_pred CCCccc-cCcH
Confidence 888776 3443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=4.9e-06 Score=73.28 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=49.7
Q ss_pred CccCceEeCcCcccccC-CCcccCCCCCCCEEeCcCCcCCCC-CCccccCCCCCCeeeCcCCcCcccCCC
Q 042476 265 LEGLQTLNLSHNFFVGK-IPENIGNMRSIESLDFSTNRLFGR-IPQSMSSLSFLNHLNLSENDLSGQIPS 332 (433)
Q Consensus 265 l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~ 332 (433)
++++..+.+..|.+..+ .-+.+..+|.+.-|+|+.|++... --+.+..++.|..|.+++|++...+..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 46778888888877533 223456678888999999998542 224577889999999999998865443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.1e-05 Score=50.56 Aligned_cols=36 Identities=36% Similarity=0.643 Sum_probs=17.2
Q ss_pred CCCEEEccCCcCcccCCcccCCCCCcCEEEccCCccc
Q 042476 78 HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLA 114 (433)
Q Consensus 78 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~ 114 (433)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 33444555555555555555544
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=8.3e-06 Score=51.13 Aligned_cols=35 Identities=31% Similarity=0.642 Sum_probs=14.3
Q ss_pred cCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcC
Q 042476 267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL 302 (433)
Q Consensus 267 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 302 (433)
+|++|++++|+++ .+|..++.+++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 3444444444444 2333344444444444444444
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.85 E-value=3.8e-05 Score=64.01 Aligned_cols=102 Identities=26% Similarity=0.307 Sum_probs=55.1
Q ss_pred CCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCcccc--ccCChhhhhcCCCccEE
Q 042476 78 HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF--GSIPTWVGERFPRLLIL 155 (433)
Q Consensus 78 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~~l~~L~~L 155 (433)
+...+||++|.+... ..|..++.|++|.+.+|+|+.+-|.--..+++|+.|.+.+|.+. +.+.+-. .+|.|++|
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa--~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA--SCPKLEYL 118 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhc--cCCcccee
Confidence 445566666665521 24455566666666666666555544444556666666666541 1222221 35666666
Q ss_pred EeeCccccccC---CccccCCCCcCEEEccC
Q 042476 156 NLRSNKFNGSL---PVQLCHLTFLRILDVAH 183 (433)
Q Consensus 156 ~L~~n~l~~~~---~~~l~~l~~L~~L~l~~ 183 (433)
.+-+|.....- ...+..+++|++||.+.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66666554221 12355667777777664
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=9.6e-05 Score=69.64 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=20.5
Q ss_pred cceeEEEcccCcccccCCccccCCccCceEeCcCcc
Q 042476 242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF 277 (433)
Q Consensus 242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~ 277 (433)
+.|++|++++|... ..|..+. .+|+.|+++.+.
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 45777777777755 3343332 577777776653
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=1.3e-05 Score=81.50 Aligned_cols=134 Identities=18% Similarity=0.234 Sum_probs=80.6
Q ss_pred CCCccEEEcCCCcC-cCcCCcccC-CCCCCCEEEccCCcCccc-CCcccCCCCCcCEEEccCCcccccCCccccCCCCCc
Q 042476 52 KSVIISLKLSKNYF-SGDIPDCWM-NWPHLQVLNLDDNYFTGN-LPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLI 128 (433)
Q Consensus 52 ~~~L~~L~L~~n~l-~~~~~~~~~-~l~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 128 (433)
-.+|++|++++... ....|..++ -+|.|+.|.+++-.+... .-....++++|..||+++++++.. ..++++++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 46777777777542 222233332 467788887777665422 223345677888888888777744 5567777777
Q ss_pred EEECcCccccc-cCChhhhhcCCCccEEEeeCccccccC--C----ccccCCCCcCEEEccCCcCcc
Q 042476 129 SLDIGENDFFG-SIPTWVGERFPRLLILNLRSNKFNGSL--P----VQLCHLTFLRILDVAHNNLSG 188 (433)
Q Consensus 129 ~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~~~~ 188 (433)
+|.+.+-.+.. ..-..+| .+++|+.||+|........ . +.-..+|+|+.||.+++.+.+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 77777655521 1223455 6788888888766543211 0 112347788888888776653
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.67 E-value=0.00018 Score=57.40 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=36.2
Q ss_pred ccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCC
Q 042476 72 CWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPR 151 (433)
Q Consensus 72 ~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 151 (433)
+|.++.+|+.+.+.. .+......+|.++++|+.+.+.++ +..+....|..+++++.+.+.. .+ ..++...+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~-~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL-KSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cc-ccccccccccccc
Confidence 344444444444442 233233334444444555554443 3333333444444455555433 11 2333333433455
Q ss_pred ccEEEeeCccccccCCccccCCCCcCEEEcc
Q 042476 152 LLILNLRSNKFNGSLPVQLCHLTFLRILDVA 182 (433)
Q Consensus 152 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 182 (433)
|+.+.+..+ +.......+.+. +++.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 555555433 222223344444 45555444
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=9.9e-05 Score=61.60 Aligned_cols=108 Identities=23% Similarity=0.227 Sum_probs=70.0
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccC-CccccCCCCCcEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIF-PVSLKNCSSLISL 130 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 130 (433)
......+||++|.+.. -+.|..++.|.+|.+.+|.|+.+.|.--.-+++|+.|.+.+|.|...- -..+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4566677888887653 244667778888888888888665555455677888888888776321 0225677888888
Q ss_pred ECcCccccccC--ChhhhhcCCCccEEEeeCcc
Q 042476 131 DIGENDFFGSI--PTWVGERFPRLLILNLRSNK 161 (433)
Q Consensus 131 ~L~~n~~~~~~--~~~~~~~l~~L~~L~L~~n~ 161 (433)
.+-+|++...- ...+...+|+|+.||...-.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88888763211 11112257788888876544
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00019 Score=67.75 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=67.9
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCC-cccccCCccccCCCCCcEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNN-RLAGIFPVSLKNCSSLISL 130 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 130 (433)
+.+++.|++++|.++ .+|. + -.+|++|.++++.-...+|..+ .++|++|.+++| .+. .+|. .|+.|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence 678889999988777 4452 1 1358889988754444666555 257888888887 444 3443 56777
Q ss_pred ECcCcccc--ccCChhhhhcCCCccEEEeeCcccc--ccCCccccCCCCcCEEEccCCcCc
Q 042476 131 DIGENDFF--GSIPTWVGERFPRLLILNLRSNKFN--GSLPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 131 ~L~~n~~~--~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
++..+... +.+| ++|+.|.+.+++-. ..++..+ -++|++|++++|...
T Consensus 118 ~L~~n~~~~L~~LP-------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i 169 (426)
T PRK15386 118 EIKGSATDSIKNVP-------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI 169 (426)
T ss_pred EeCCCCCcccccCc-------chHhheecccccccccccccccc--CCcccEEEecCCCcc
Confidence 77665431 2222 35667766443211 0111111 147888888877754
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=1.2e-05 Score=81.76 Aligned_cols=134 Identities=22% Similarity=0.259 Sum_probs=75.6
Q ss_pred CCccEEEccCCcccccCC-ccccCCCCCCCccEEEcCCCcCcC-cCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476 26 FEFGLLDLSNNALSGSII-HLICNGDNKSVIISLKLSKNYFSG-DIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L 103 (433)
.+|++||+++...-.... ..+. .-+|.|+.|.+.+-.+.. .......++|+|..||+++..++.. ..++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig--~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG--TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh--hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 357777777654321111 1111 236777777777655542 2223345677777777777777633 456677777
Q ss_pred CEEEccCCcccc-cCCccccCCCCCcEEECcCccccccCCh------hhhhcCCCccEEEeeCccccc
Q 042476 104 RSLHLRNNRLAG-IFPVSLKNCSSLISLDIGENDFFGSIPT------WVGERFPRLLILNLRSNKFNG 164 (433)
Q Consensus 104 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~------~~~~~l~~L~~L~L~~n~l~~ 164 (433)
+.|.+.+=.+.. ..-..+.++++|++||+|..... ..+. ..+..+|+|+.||.+++.+..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 777776655442 11123556777777777766542 1111 111246788888888777654
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.57 E-value=0.00021 Score=56.96 Aligned_cols=118 Identities=21% Similarity=0.202 Sum_probs=46.0
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
+.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++|+.++
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 45566666553 344444555666666666666553 4433444555655666666654 33333444555566666666
Q ss_pred CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCc
Q 042476 132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL 176 (433)
Q Consensus 132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 176 (433)
+..+ + ..++...+.+. +|+.+.+.. .+......+|.++++|
T Consensus 88 ~~~~-~-~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-I-TEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT---BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cCcc-c-cEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6543 2 24444444444 666665544 2222333445444443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.00 E-value=0.0004 Score=60.47 Aligned_cols=39 Identities=28% Similarity=0.475 Sum_probs=17.3
Q ss_pred CCCCcCEEEccCC--cccccCCccccCCCCCcEEECcCccc
Q 042476 99 TLSSLRSLHLRNN--RLAGIFPVSLKNCSSLISLDIGENDF 137 (433)
Q Consensus 99 ~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~~ 137 (433)
.|++|++|.++.| ++.+.++.-...+++|++|++++|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3444555555554 33333333333344555555555544
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.95 E-value=7.5e-06 Score=75.37 Aligned_cols=64 Identities=25% Similarity=0.244 Sum_probs=27.7
Q ss_pred CCccCceEeCcCcccc--cCCCcccCCCCCCCEEeCcCCcCCCCC-----CccccCCCCCCeeeCcCCcCc
Q 042476 264 NLEGLQTLNLSHNFFV--GKIPENIGNMRSIESLDFSTNRLFGRI-----PQSMSSLSFLNHLNLSENDLS 327 (433)
Q Consensus 264 ~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~ 327 (433)
+++.|+.+++.++... +.+...-.+++.|+.+.++.|.+.... ...-.....|+.+.+++++..
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 3455555555554421 112222234455555555555432111 111233445555555555543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00062 Score=59.33 Aligned_cols=106 Identities=22% Similarity=0.196 Sum_probs=70.7
Q ss_pred CCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCC--cCcccCCcccCCCCCcCEEEccCCcccccCCcc---ccCCC
Q 042476 51 NKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDN--YFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVS---LKNCS 125 (433)
Q Consensus 51 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~ 125 (433)
.+..|+.+++.+..++.. ..|..+++|+.|.++.| ++.+.++.....+++|++|++++|++.. ++. +..+.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 366777777766665522 23456788899999998 6665555555666899999999998873 222 45677
Q ss_pred CCcEEECcCcccccc--CChhhhhcCCCccEEEeeCc
Q 042476 126 SLISLDIGENDFFGS--IPTWVGERFPRLLILNLRSN 160 (433)
Q Consensus 126 ~L~~L~L~~n~~~~~--~~~~~~~~l~~L~~L~L~~n 160 (433)
+|..|++..|..+.. -...++.-+++|++|+-...
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 788888888865331 12344556788888875443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.00011 Score=64.35 Aligned_cols=60 Identities=32% Similarity=0.356 Sum_probs=25.9
Q ss_pred CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCC-ccccCCCCCcEEECcCcc
Q 042476 75 NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP-VSLKNCSSLISLDIGEND 136 (433)
Q Consensus 75 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 136 (433)
.|+.|++|.|+-|+|+..- .|..+++|+.|+|..|.|.+... .-+.++++|+.|.|..|+
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 4455555555555544221 23344455555555554442210 113344444444444444
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.43 E-value=0.00012 Score=67.69 Aligned_cols=258 Identities=14% Similarity=0.086 Sum_probs=136.2
Q ss_pred CCCccEEEccCCc-ccccCCccccCCCCCCCccEEEcCCC-cCcCcCCc-ccCCCCCCCEEEccCCcC-cccCC-cccCC
Q 042476 25 PFEFGLLDLSNNA-LSGSIIHLICNGDNKSVIISLKLSKN-YFSGDIPD-CWMNWPHLQVLNLDDNYF-TGNLP-ISIGT 99 (433)
Q Consensus 25 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~i-~~~~p-~~~~~ 99 (433)
++++++|.+.++. +++..-..+. ..+++|+++++..| .++...-. .-..+++|++|+++.+.- .+.-- ..+.+
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla--~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLA--RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHH--HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 7899999888875 3332211221 55899999999985 34432222 234688999999998753 33211 23456
Q ss_pred CCCcCEEEccCCccccc--CCccccCCCCCcEEECcCcc-ccccCChhhhhcCCCccEEEeeCcccccc-CCccc-cCCC
Q 042476 100 LSSLRSLHLRNNRLAGI--FPVSLKNCSSLISLDIGEND-FFGSIPTWVGERFPRLLILNLRSNKFNGS-LPVQL-CHLT 174 (433)
Q Consensus 100 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l-~~l~ 174 (433)
...++.+.+.||.=.+. +-..-+.+..+.++++..+. +++.--..+...+..|+.|+.+++...+. .-.++ .+.+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 67777777776531110 00111234455566654443 22221122223467888888887754311 11122 4568
Q ss_pred CcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcc
Q 042476 175 FLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNF 254 (433)
Q Consensus 175 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~ 254 (433)
+|+.|.++.++.-+.. .|.. ....++.|+.+++..+..
T Consensus 321 ~L~~l~l~~c~~fsd~--~ft~----------------------------------------l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDR--GFTM----------------------------------------LGRNCPHLERLDLEECGL 358 (483)
T ss_pred ceEEEeccccchhhhh--hhhh----------------------------------------hhcCChhhhhhcccccce
Confidence 8899888877631111 0100 011133344444444432
Q ss_pred c--ccCCccccCCccCceEeCcCccc-ccCC----CcccCCCCCCCEEeCcCCcCCC-CCCccccCCCCCCeeeCcCCcC
Q 042476 255 S--GEIPMQLTNLEGLQTLNLSHNFF-VGKI----PENIGNMRSIESLDFSTNRLFG-RIPQSMSSLSFLNHLNLSENDL 326 (433)
Q Consensus 255 ~--~~~~~~~~~l~~L~~L~Ls~n~l-~~~~----~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~l 326 (433)
. +.+...-.+++.|+.|.|+++.. +++. ...-..+..|+.+.++++..+. ..-..+..+++|+.+++-+++-
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 1 11222223566677777776553 2221 1112345667777777776532 2334456677777777776653
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.00012 Score=64.15 Aligned_cols=99 Identities=26% Similarity=0.243 Sum_probs=76.8
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCc--ccCCCCC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPI--SIGTLSS 102 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~--~~~~l~~ 102 (433)
+.+++.|+..++.++++. +| ..++.|++|.|+-|.|+.. ..|..++.|++|+|..|.|.. +.+ -+.++++
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic--~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---IC--EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHHH---HH--HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCch
Confidence 456888999999987642 22 4599999999999999854 346789999999999999883 332 3688999
Q ss_pred cCEEEccCCcccccCCc-----cccCCCCCcEEE
Q 042476 103 LRSLHLRNNRLAGIFPV-----SLKNCSSLISLD 131 (433)
Q Consensus 103 L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~ 131 (433)
|+.|-|..|.-.+.-+. .++-+|+|++||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999999887655433 356788888887
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.31 E-value=6.4e-06 Score=80.22 Aligned_cols=185 Identities=24% Similarity=0.257 Sum_probs=117.8
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-CC-CCCccEEEcCCCcCcCc----CCcccCC
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-DN-KSVIISLKLSKNYFSGD----IPDCWMN 75 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~-~~~L~~L~L~~n~l~~~----~~~~~~~ 75 (433)
|+|.+|.+.+...+.....++. .++|+.|++++|.+.+.....+++. .. -+.++.|++..|.++.. +.+.+..
T Consensus 92 L~L~~~~l~~~~~~~l~~~l~t-~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~ 170 (478)
T KOG4308|consen 92 LSLANNRLGDRGAEELAQALKT-LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK 170 (478)
T ss_pred hhhhhCccccchHHHHHHHhcc-cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc
Confidence 5667777776644333333332 5679999999999886655555554 22 26778888888877643 4455556
Q ss_pred CCCCCEEEccCCcCcc----cCCcccC----CCCCcCEEEccCCccccc----CCccccCCCC-CcEEECcCccccccCC
Q 042476 76 WPHLQVLNLDDNYFTG----NLPISIG----TLSSLRSLHLRNNRLAGI----FPVSLKNCSS-LISLDIGENDFFGSIP 142 (433)
Q Consensus 76 l~~L~~L~L~~n~i~~----~~p~~~~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~~~~~~~ 142 (433)
...++.++++.|.+.. .++..+. ...++++|.+.+|.++.. +...+...+. +..+++..|.+.+..-
T Consensus 171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~ 250 (478)
T KOG4308|consen 171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV 250 (478)
T ss_pred ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence 7788889999888742 1233333 467889999998887632 1222444555 6678888887743311
Q ss_pred hhhhh---cC-CCccEEEeeCcccccc----CCccccCCCCcCEEEccCCcCc
Q 042476 143 TWVGE---RF-PRLLILNLRSNKFNGS----LPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 143 ~~~~~---~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
..... .+ ..+++++++.|.++.. +...+..++.++++.+++|.+.
T Consensus 251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 11111 23 4668888888888743 2334556678888888888775
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.13 E-value=0.00062 Score=67.60 Aligned_cols=111 Identities=23% Similarity=0.172 Sum_probs=48.9
Q ss_pred CCCCCEEEccCCcCccc--CCcccCCCCCcCEEEccCC-cccccC----CccccCCCCCcEEECcCcc-ccccCChhhhh
Q 042476 76 WPHLQVLNLDDNYFTGN--LPISIGTLSSLRSLHLRNN-RLAGIF----PVSLKNCSSLISLDIGEND-FFGSIPTWVGE 147 (433)
Q Consensus 76 l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~ 147 (433)
++.|+.+.+.++.-... .-......++|+.|+++++ ...... ......+++|+.|+++.+. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555554422211 1122334555666665542 111011 1122344556666666554 33333333333
Q ss_pred cCCCccEEEeeCcc-cccc-CCccccCCCCcCEEEccCCcC
Q 042476 148 RFPRLLILNLRSNK-FNGS-LPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 148 ~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~~ 186 (433)
.+++|++|.+.+|. ++.. +-.....+++|++|+++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 45666666655554 3311 111223455566666665543
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.52 E-value=0.00085 Score=66.61 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=45.7
Q ss_pred CCCcCEEEccCCccccc--CCccccCCCCCcEEECcCc-cccccC---ChhhhhcCCCccEEEeeCcc-ccccCCcccc-
Q 042476 100 LSSLRSLHLRNNRLAGI--FPVSLKNCSSLISLDIGEN-DFFGSI---PTWVGERFPRLLILNLRSNK-FNGSLPVQLC- 171 (433)
Q Consensus 100 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n-~~~~~~---~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~- 171 (433)
.+.|+.+.+.++.-... .......++.|+.|+++++ ...... .......+.+|+.|+++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555432211 1123345556666666542 110011 11122344556666666555 3211111111
Q ss_pred CCCCcCEEEccCCc-Cccc-CCCCcccccccccccccccc
Q 042476 172 HLTFLRILDVAHNN-LSGT-IPRCINNFTAMATINSSNQK 209 (433)
Q Consensus 172 ~l~~L~~L~l~~n~-~~~~-~p~~~~~l~~L~~L~l~~~~ 209 (433)
.+++|+.|.+.++. +++. +-.....++.|++|+++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24556666555444 2211 11222344555555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.98 E-value=0.011 Score=30.68 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=4.1
Q ss_pred CEEEccCCcCc
Q 042476 80 QVLNLDDNYFT 90 (433)
Q Consensus 80 ~~L~L~~n~i~ 90 (433)
++|+|++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.18 E-value=0.023 Score=47.85 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=57.6
Q ss_pred eeEEEcccCcccccCCccccCCccCceEeCcCccc-ccCCCcccC-CCCCCCEEeCcCC-cCCCCCCccccCCCCCCeee
Q 042476 244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFF-VGKIPENIG-NMRSIESLDFSTN-RLFGRIPQSMSSLSFLNHLN 320 (433)
Q Consensus 244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~ 320 (433)
++.++-+++.+..+-...+..++.++.|.+.++.- .+.--+-++ -.++|+.|+++.| +||+.--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 78888899888877667778888888888888752 211111111 3478999999987 67765556677788888888
Q ss_pred CcCC
Q 042476 321 LSEN 324 (433)
Q Consensus 321 L~~n 324 (433)
+.+=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 7643
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.84 E-value=0.17 Score=24.30 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=5.0
Q ss_pred CcCEEEccCCcCc
Q 042476 175 FLRILDVAHNNLS 187 (433)
Q Consensus 175 ~L~~L~l~~n~~~ 187 (433)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.31 E-value=0.31 Score=26.20 Aligned_cols=12 Identities=58% Similarity=0.869 Sum_probs=4.8
Q ss_pred cCEEEccCCccc
Q 042476 103 LRSLHLRNNRLA 114 (433)
Q Consensus 103 L~~L~L~~n~l~ 114 (433)
|++|++++|.+.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00369 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 334444444333
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.31 E-value=0.31 Score=26.20 Aligned_cols=12 Identities=58% Similarity=0.869 Sum_probs=4.8
Q ss_pred cCEEEccCCccc
Q 042476 103 LRSLHLRNNRLA 114 (433)
Q Consensus 103 L~~L~L~~n~l~ 114 (433)
|++|++++|.+.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00370 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 334444444333
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.95 E-value=0.35 Score=25.99 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=7.0
Q ss_pred CCCCEEeCcCCcCC
Q 042476 290 RSIESLDFSTNRLF 303 (433)
Q Consensus 290 ~~L~~L~Ls~n~l~ 303 (433)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.95 E-value=0.35 Score=25.99 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=7.0
Q ss_pred CCCCEEeCcCCcCC
Q 042476 290 RSIESLDFSTNRLF 303 (433)
Q Consensus 290 ~~L~~L~Ls~n~l~ 303 (433)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.48 E-value=0.0025 Score=62.36 Aligned_cols=162 Identities=20% Similarity=0.176 Sum_probs=106.9
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCcCcC----cCCcccC--
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNYFSG----DIPDCWM-- 74 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~----~~~~~~~-- 74 (433)
||+++|.+.+..-......++..-..+++|++..+.+++..-..+.+. .....++.++++.|.+.. .++..+.
T Consensus 120 L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~ 199 (478)
T KOG4308|consen 120 LDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESA 199 (478)
T ss_pred hhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhh
Confidence 688889888432222223334323578889999998887654444333 347889999999997741 2233333
Q ss_pred --CCCCCCEEEccCCcCccc----CCcccCCCCC-cCEEEccCCccccc----CCccccCC-CCCcEEECcCccccccCC
Q 042476 75 --NWPHLQVLNLDDNYFTGN----LPISIGTLSS-LRSLHLRNNRLAGI----FPVSLKNC-SSLISLDIGENDFFGSIP 142 (433)
Q Consensus 75 --~l~~L~~L~L~~n~i~~~----~p~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~~~~~~~ 142 (433)
...++++|.+++|.++.. ....+...+. +..|++..|.+... +...+..+ ..+++++++.|.+...-.
T Consensus 200 ~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~ 279 (478)
T KOG4308|consen 200 ASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV 279 (478)
T ss_pred hcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccch
Confidence 467899999999988732 2233455555 77799999987743 22234444 678999999999865444
Q ss_pred hhhh---hcCCCccEEEeeCcccc
Q 042476 143 TWVG---ERFPRLLILNLRSNKFN 163 (433)
Q Consensus 143 ~~~~---~~l~~L~~L~L~~n~l~ 163 (433)
.... ..++.++++.++.|.+.
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHhhhHHHHHhhcccCccc
Confidence 3333 25668999999999876
No 80
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=87.42 E-value=0.25 Score=29.65 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=13.0
Q ss_pred hhhhhhhhhhhhhhHhhhhheecccc
Q 042476 385 LYASMALGFVVGFWCFIGPLLVNRRW 410 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (433)
+.+++++.++++++++.+.+++|+|+
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEec
Confidence 33445555555555554555544444
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.09 E-value=0.14 Score=27.06 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=10.6
Q ss_pred CCccEEEccCCcccccCC
Q 042476 26 FEFGLLDLSNNALSGSII 43 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~~~~ 43 (433)
++|++|++++|.+++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 467777777777765543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.66 E-value=0.025 Score=48.69 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=66.7
Q ss_pred ccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN 320 (433)
Q Consensus 241 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 320 (433)
+...+.||++.|.+. .+...|+.++.|..|+++.|++. ..|+.++....+..+++.+|..+ ..|.++...++++.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 455778888888775 33445666778888999988886 67888888888888888888875 7788888889999999
Q ss_pred CcCCcCc
Q 042476 321 LSENDLS 327 (433)
Q Consensus 321 L~~n~l~ 327 (433)
+-.|.++
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9888875
No 83
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=86.50 E-value=0.29 Score=37.92 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=16.0
Q ss_pred hhhhhhhhhhhhhhHhhhhheeccccc
Q 042476 385 LYASMALGFVVGFWCFIGPLLVNRRWR 411 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (433)
.+.++++|++++++.++++++|+.||+
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777776666665555544443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.34 E-value=0.014 Score=50.28 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=45.4
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
+...+.||++.|++. ..-..|+-++.+..|+++.|.+. -.|..++.+..++.+++..|..+ ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 445555666555544 22333444555555666655555 45555555555555555555544 4555566666666666
Q ss_pred CcCccc
Q 042476 132 IGENDF 137 (433)
Q Consensus 132 L~~n~~ 137 (433)
+.++.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 655543
No 85
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=83.11 E-value=0.39 Score=38.45 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=12.8
Q ss_pred hhhhhhhhhhhhhhHhhhhheec
Q 042476 385 LYASMALGFVVGFWCFIGPLLVN 407 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~ 407 (433)
+++++++|+.+.+++++++++|+
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~ 72 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFI 72 (154)
T ss_pred EEEEEEecccHHHHHHHHHhhee
Confidence 56666666655555554444443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=81.05 E-value=4.4 Score=39.05 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=15.6
Q ss_pred CCCccEEEccCCcccccCCcccc
Q 042476 25 PFEFGLLDLSNNALSGSIIHLIC 47 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~ 47 (433)
.+.++++|++.|.+.+..|-.+.
T Consensus 164 npr~r~~dls~npi~dkvpihl~ 186 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLP 186 (553)
T ss_pred cchhhhhccCCCcccccCCcccc
Confidence 44677888888877766665553
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.96 E-value=0.24 Score=41.90 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=13.0
Q ss_pred cCEEEccCCcccccCCccccCCCCCcEEECcCc
Q 042476 103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN 135 (433)
Q Consensus 103 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 135 (433)
++.++.+++.|..+--.-+.+++.++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 344444444443322222333444444444433
No 88
>PF15102 TMEM154: TMEM154 protein family
Probab=79.23 E-value=1.1 Score=35.57 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=8.7
Q ss_pred hhHhhhhheecccccch
Q 042476 397 FWCFIGPLLVNRRWRYK 413 (433)
Q Consensus 397 ~~~~~~~~~~~~~~~~~ 413 (433)
++++++++.++||||.+
T Consensus 72 Ll~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 72 LLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHheeEEeecccC
Confidence 34444445555666553
No 89
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=75.28 E-value=0.99 Score=33.57 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=9.0
Q ss_pred hhhhhhhhhhhhhhHhhhh
Q 042476 385 LYASMALGFVVGFWCFIGP 403 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~ 403 (433)
.+.++++++++++.+++++
T Consensus 67 aiagi~vg~~~~v~~lv~~ 85 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGF 85 (96)
T ss_pred cEEEEEeehhhHHHHHHHH
Confidence 4556555555444333333
No 90
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=73.04 E-value=2.5 Score=25.00 Aligned_cols=9 Identities=11% Similarity=0.457 Sum_probs=3.4
Q ss_pred hhhhhhhhh
Q 042476 386 YASMALGFV 394 (433)
Q Consensus 386 ~~~~~~~~~ 394 (433)
++++++|++
T Consensus 9 Iv~V~vg~~ 17 (38)
T PF02439_consen 9 IVAVVVGMA 17 (38)
T ss_pred HHHHHHHHH
Confidence 333333333
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.25 E-value=2 Score=42.09 Aligned_cols=64 Identities=22% Similarity=0.243 Sum_probs=35.7
Q ss_pred CCccCceEeCcCcccccC--CCcccCCCCCCCEEeCcCC--cCCCCCCcccc--CCCCCCeeeCcCCcCccc
Q 042476 264 NLEGLQTLNLSHNFFVGK--IPENIGNMRSIESLDFSTN--RLFGRIPQSMS--SLSFLNHLNLSENDLSGQ 329 (433)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~ 329 (433)
+.+.+..+.|++|++... +...-...|+|+.|+|++| .+... .++. ....|++|-+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 456677788888876422 1111233477888888887 33211 1111 123467777777777643
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.42 E-value=3.4 Score=22.68 Aligned_cols=17 Identities=41% Similarity=0.333 Sum_probs=12.2
Q ss_pred CCccEEEccCCcccccC
Q 042476 26 FEFGLLDLSNNALSGSI 42 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~~~ 42 (433)
++|++|||++|.++...
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 46888888888876543
No 93
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.90 E-value=4.6 Score=21.82 Aligned_cols=13 Identities=38% Similarity=0.756 Sum_probs=6.7
Q ss_pred CCCCEEeCcCCcC
Q 042476 290 RSIESLDFSTNRL 302 (433)
Q Consensus 290 ~~L~~L~Ls~n~l 302 (433)
.+|+.|+++.|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555555
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.87 E-value=4 Score=22.05 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=7.2
Q ss_pred CCCEEeCcCCcCC
Q 042476 291 SIESLDFSTNRLF 303 (433)
Q Consensus 291 ~L~~L~Ls~n~l~ 303 (433)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555554
No 95
>PTZ00370 STEVOR; Provisional
Probab=65.57 E-value=2.9 Score=37.36 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=12.5
Q ss_pred hhhhheecccccchhhhhhhh
Q 042476 400 FIGPLLVNRRWRYKYGHFLDG 420 (433)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~ 420 (433)
++...|.+|||+..|++-..+
T Consensus 272 iilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 272 IILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred HHHHHHHHHhhcchhHHHHHh
Confidence 344455567777777765544
No 96
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=65.24 E-value=2.8 Score=37.40 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=8.7
Q ss_pred hhhheecccccchhhh
Q 042476 401 IGPLLVNRRWRYKYGH 416 (433)
Q Consensus 401 ~~~~~~~~~~~~~~~~ 416 (433)
+...|.+|||+..|++
T Consensus 277 iLYiWlyrrRK~swkh 292 (295)
T TIGR01478 277 ILYIWLYRRRKKSWKH 292 (295)
T ss_pred HHHHHHHHhhcccccc
Confidence 3334455666666654
No 97
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=63.81 E-value=5 Score=37.20 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=4.7
Q ss_pred hhheecccccc
Q 042476 402 GPLLVNRRWRY 412 (433)
Q Consensus 402 ~~~~~~~~~~~ 412 (433)
+++++.|||.+
T Consensus 290 iaYli~Rrr~~ 300 (306)
T PF01299_consen 290 IAYLIGRRRSR 300 (306)
T ss_pred HhheeEecccc
Confidence 33444444433
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.70 E-value=2.9 Score=41.07 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=6.6
Q ss_pred CCcEEECcCccc
Q 042476 126 SLISLDIGENDF 137 (433)
Q Consensus 126 ~L~~L~L~~n~~ 137 (433)
.|++|-+.+|++
T Consensus 271 ~Leel~l~GNPl 282 (585)
T KOG3763|consen 271 PLEELVLEGNPL 282 (585)
T ss_pred CHHHeeecCCcc
Confidence 445555555555
No 99
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=57.47 E-value=3.1 Score=35.43 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=13.9
Q ss_pred hhhhhhhhhhhhhhHhhhhheec
Q 042476 385 LYASMALGFVVGFWCFIGPLLVN 407 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~ 407 (433)
+++++++|+++++++++++++++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHHH
Confidence 66677777766665555555543
No 100
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=55.74 E-value=28 Score=33.83 Aligned_cols=110 Identities=17% Similarity=0.078 Sum_probs=56.8
Q ss_pred CCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCccc---CCCCCcCEEEccCCcccccCCccccC---C
Q 042476 51 NKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISI---GTLSSLRSLHLRNNRLAGIFPVSLKN---C 124 (433)
Q Consensus 51 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~---l 124 (433)
.-+.+++++++.|.+....|-.+..=. --+.++.+..+...-..+ ..-..+.+++++.|.....+|..... -
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred CcchhhhhccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 356788999999988765554432210 014455555442210000 11135777888888776666654332 2
Q ss_pred CCCcEEECcCccccc--cCChhhhhcCCCccEEEeeCccc
Q 042476 125 SSLISLDIGENDFFG--SIPTWVGERFPRLLILNLRSNKF 162 (433)
Q Consensus 125 ~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~L~~n~l 162 (433)
.-+++++.+...+.. .....+...-+++.+.+++.|..
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 345666666554311 11122222345677777766654
No 101
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=54.58 E-value=8.9 Score=27.02 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=10.6
Q ss_pred hhhhhhhhhhhhHhhhhheecccc
Q 042476 387 ASMALGFVVGFWCFIGPLLVNRRW 410 (433)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~ 410 (433)
+++++|+++++++++++++++||.
T Consensus 4 ~~~~~g~~~ll~~v~~~~~~~rr~ 27 (75)
T PF14575_consen 4 ASIIVGVLLLLVLVIIVIVCFRRC 27 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTT-
T ss_pred ehHHHHHHHHHHhheeEEEEEeeE
Confidence 334444444444444444444443
No 102
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=54.11 E-value=10 Score=28.00 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=18.6
Q ss_pred chhhhhhhhhhhhhhhhhhHhhhh--heecccccchhhhh
Q 042476 380 EVDWLLYASMALGFVVGFWCFIGP--LLVNRRWRYKYGHF 417 (433)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 417 (433)
...|...+++++++++..++++.+ .-+|++++..|.++
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~ 53 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHH 53 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccc
Confidence 345655566555554444333322 22355555555554
No 103
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=53.42 E-value=8.3 Score=45.58 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=21.7
Q ss_pred eCcCcccccCCCcccCCCCCCCEEeCcCCcC
Q 042476 272 NLSHNFFVGKIPENIGNMRSIESLDFSTNRL 302 (433)
Q Consensus 272 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 302 (433)
||++|+|+...+..|..+++|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 4677777755556677777777777777755
No 104
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=52.94 E-value=5.4 Score=31.76 Aligned_cols=14 Identities=21% Similarity=0.295 Sum_probs=7.6
Q ss_pred hhHhhhhheecccc
Q 042476 397 FWCFIGPLLVNRRW 410 (433)
Q Consensus 397 ~~~~~~~~~~~~~~ 410 (433)
++..++.+|+|+++
T Consensus 23 l~cgiGcvwhwkhr 36 (158)
T PF11770_consen 23 LLCGIGCVWHWKHR 36 (158)
T ss_pred HHHhcceEEEeecc
Confidence 33345556666664
No 105
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=50.22 E-value=11 Score=30.18 Aligned_cols=29 Identities=7% Similarity=0.237 Sum_probs=23.2
Q ss_pred hhhhhhhhhhhhhHhhhhheecccccchh
Q 042476 386 YASMALGFVVGFWCFIGPLLVNRRWRYKY 414 (433)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (433)
-+++++|+.+.++++++.+-+..+|+.+.
T Consensus 9 sv~i~igi~Ll~lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 9 SVAISIGISLLLLLLLCGIGCVWHWKHRD 37 (158)
T ss_pred hHHHHHHHHHHHHHHHHhcceEEEeeccC
Confidence 36667778888888888888888898887
No 106
>PRK01844 hypothetical protein; Provisional
Probab=49.40 E-value=7.3 Score=26.88 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=15.1
Q ss_pred hhhhhhhhhhhhHhhhhheecccccchhh
Q 042476 387 ASMALGFVVGFWCFIGPLLVNRRWRYKYG 415 (433)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (433)
++++++++++++.+++.+++.|++..+|.
T Consensus 5 ~~I~l~I~~li~G~~~Gff~ark~~~k~l 33 (72)
T PRK01844 5 LGILVGVVALVAGVALGFFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555666666655553
No 107
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=43.88 E-value=11 Score=29.20 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=0.0
Q ss_pred hHhhhhheecccccch
Q 042476 398 WCFIGPLLVNRRWRYK 413 (433)
Q Consensus 398 ~~~~~~~~~~~~~~~~ 413 (433)
++++..+++|||.|++
T Consensus 92 l~llsg~lv~rrcrrr 107 (129)
T PF12191_consen 92 LALLSGFLVWRRCRRR 107 (129)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHhhhhcc
Confidence 3344455666655443
No 108
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=43.16 E-value=7.6 Score=29.35 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=0.0
Q ss_pred hHhhhhheecccccchhhhhhh
Q 042476 398 WCFIGPLLVNRRWRYKYGHFLD 419 (433)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~ 419 (433)
++++...||+||+ --|+...+
T Consensus 38 iLLliGCWYckRR-SGYk~L~~ 58 (118)
T PF14991_consen 38 ILLLIGCWYCKRR-SGYKTLRD 58 (118)
T ss_dssp ----------------------
T ss_pred HHHHHhheeeeec-chhhhhhh
Confidence 3334444544443 34444433
No 109
>PRK00523 hypothetical protein; Provisional
Probab=43.12 E-value=11 Score=26.08 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=15.8
Q ss_pred hhhhhhhhhhhhHhhhhheecccccchhhh
Q 042476 387 ASMALGFVVGFWCFIGPLLVNRRWRYKYGH 416 (433)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (433)
++++++++++++.+++.+++.|++..+|.+
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455556666666555543
No 110
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=39.57 E-value=19 Score=22.79 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=7.0
Q ss_pred hhHhhhhheecccccchh
Q 042476 397 FWCFIGPLLVNRRWRYKY 414 (433)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~ 414 (433)
++++++..+++++.|.++
T Consensus 21 ~F~gi~~w~~~~~~k~~~ 38 (49)
T PF05545_consen 21 FFIGIVIWAYRPRNKKRF 38 (49)
T ss_pred HHHHHHHHHHcccchhhH
Confidence 333333344444434333
No 111
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=38.93 E-value=14 Score=33.96 Aligned_cols=25 Identities=8% Similarity=0.103 Sum_probs=9.8
Q ss_pred hhhhhhhhhHhhhhheecccccchh
Q 042476 390 ALGFVVGFWCFIGPLLVNRRWRYKY 414 (433)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (433)
++.+++++++|++++++|.-||.|.
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444443333
No 112
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.93 E-value=22 Score=18.82 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=7.2
Q ss_pred CCCCEEeCcCCc
Q 042476 290 RSIESLDFSTNR 301 (433)
Q Consensus 290 ~~L~~L~Ls~n~ 301 (433)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666663
No 113
>PTZ00046 rifin; Provisional
Probab=31.55 E-value=25 Score=32.91 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=6.0
Q ss_pred hhhheecccccchh
Q 042476 401 IGPLLVNRRWRYKY 414 (433)
Q Consensus 401 ~~~~~~~~~~~~~~ 414 (433)
+..++.++||+.+-
T Consensus 333 IIYLILRYRRKKKM 346 (358)
T PTZ00046 333 IIYLILRYRRKKKM 346 (358)
T ss_pred HHHHHHHhhhcchh
Confidence 33344445554443
No 114
>PF15050 SCIMP: SCIMP protein
Probab=31.46 E-value=19 Score=27.56 Aligned_cols=6 Identities=33% Similarity=1.160 Sum_probs=2.8
Q ss_pred ccccch
Q 042476 408 RRWRYK 413 (433)
Q Consensus 408 ~~~~~~ 413 (433)
+||.++
T Consensus 31 cR~~lR 36 (133)
T PF15050_consen 31 CRWQLR 36 (133)
T ss_pred HHHHHH
Confidence 555444
No 115
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=31.27 E-value=16 Score=28.89 Aligned_cols=13 Identities=15% Similarity=0.077 Sum_probs=6.5
Q ss_pred heecccccchhhh
Q 042476 404 LLVNRRWRYKYGH 416 (433)
Q Consensus 404 ~~~~~~~~~~~~~ 416 (433)
++++++.|+|.++
T Consensus 17 ~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 17 FLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHhhc
Confidence 3445555555444
No 116
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=31.02 E-value=26 Score=32.72 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=6.0
Q ss_pred hhhheecccccchh
Q 042476 401 IGPLLVNRRWRYKY 414 (433)
Q Consensus 401 ~~~~~~~~~~~~~~ 414 (433)
+..++.++||+.+-
T Consensus 328 IIYLILRYRRKKKM 341 (353)
T TIGR01477 328 IIYLILRYRRKKKM 341 (353)
T ss_pred HHHHHHHhhhcchh
Confidence 33344445554443
No 117
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=30.08 E-value=17 Score=35.46 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred hhhhhhhhhhh
Q 042476 386 YASMALGFVVG 396 (433)
Q Consensus 386 ~~~~~~~~~~~ 396 (433)
++++++|++++
T Consensus 354 ~l~vVlgvavl 364 (439)
T PF02480_consen 354 LLGVVLGVAVL 364 (439)
T ss_dssp -----------
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 118
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=29.18 E-value=35 Score=32.25 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=15.6
Q ss_pred hhhhhhhhhhhhhhhHhhhhheeccccc
Q 042476 384 LLYASMALGFVVGFWCFIGPLLVNRRWR 411 (433)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (433)
++++++.+.+++++++.++++++.+|||
T Consensus 387 ~i~~avl~p~~il~~~~~~~~~~v~rrr 414 (436)
T PTZ00208 387 MIILAVLVPAIILAIIAVAFFIMVKRRR 414 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeeeecc
Confidence 3566666665555544455555555554
No 119
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=28.86 E-value=19 Score=32.19 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHhhhhheeccccc
Q 042476 387 ASMALGFVVGFWCFIGPLLVNRRWR 411 (433)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (433)
+.+.+..++++++.++.+++|||+|
T Consensus 228 f~lLVPSiILVLLaVGGLLfYr~rr 252 (285)
T PF05337_consen 228 FYLLVPSIILVLLAVGGLLFYRRRR 252 (285)
T ss_dssp -------------------------
T ss_pred ccccccchhhhhhhccceeeecccc
Confidence 3333333333444444455444443
No 120
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=28.67 E-value=19 Score=32.84 Aligned_cols=11 Identities=18% Similarity=-0.167 Sum_probs=0.0
Q ss_pred cccccchhhhh
Q 042476 407 NRRWRYKYGHF 417 (433)
Q Consensus 407 ~~~~~~~~~~~ 417 (433)
++|+|++-+..
T Consensus 169 cyrrkR~GK~~ 179 (290)
T PF05454_consen 169 CYRRKRKGKMS 179 (290)
T ss_dssp -----------
T ss_pred hhhhhhccccc
Confidence 33443333333
No 121
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=26.72 E-value=12 Score=27.83 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=10.5
Q ss_pred hhhhhhhhhhhhhhHhhhhhe
Q 042476 385 LYASMALGFVVGFWCFIGPLL 405 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~ 405 (433)
+-.+.++|++++++++++.++
T Consensus 63 ls~gaiagi~vg~~~~v~~lv 83 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVGGLV 83 (96)
T ss_pred cccccEEEEEeehhhHHHHHH
Confidence 345555555555554444433
No 122
>PF15179 Myc_target_1: Myc target protein 1
Probab=25.34 E-value=38 Score=28.18 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhhhhHhhhhheeccc
Q 042476 385 LYASMALGFVVGFWCFIGPLLVNRR 409 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (433)
..+.++||++++.++.+...+..||
T Consensus 25 F~vSm~iGLviG~li~~LltwlSRR 49 (197)
T PF15179_consen 25 FCVSMAIGLVIGALIWALLTWLSRR 49 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555444444444
No 123
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=25.30 E-value=33 Score=20.99 Aligned_cols=29 Identities=10% Similarity=0.289 Sum_probs=17.4
Q ss_pred hhhhhhhhhhhhHhhhhheecccccchhh
Q 042476 387 ASMALGFVVGFWCFIGPLLVNRRWRYKYG 415 (433)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (433)
..+.+++++++++.++..+|.+-+.++-+
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqIrgK 35 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQIRGK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566667777777777655544443
No 124
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=25.24 E-value=24 Score=21.18 Aligned_cols=8 Identities=38% Similarity=1.282 Sum_probs=4.4
Q ss_pred heeccccc
Q 042476 404 LLVNRRWR 411 (433)
Q Consensus 404 ~~~~~~~~ 411 (433)
.+.+|+|.
T Consensus 27 ~~iYRKw~ 34 (43)
T PF08114_consen 27 LFIYRKWQ 34 (43)
T ss_pred HHHHHHHH
Confidence 44566664
No 125
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=25.14 E-value=31 Score=22.05 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=8.6
Q ss_pred eecccccchhhhhhhh
Q 042476 405 LVNRRWRYKYGHFLDG 420 (433)
Q Consensus 405 ~~~~~~~~~~~~~~~~ 420 (433)
++..-.+..|++..+.
T Consensus 20 I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 20 ICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHhhccccccccCC
Confidence 3334444566776665
No 126
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=25.06 E-value=24 Score=28.79 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhHhhhhh-eecccccchh
Q 042476 385 LYASMALGFVVGFWCFIGPL-LVNRRWRYKY 414 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 414 (433)
.++++++|+++++.++.+++ ++.||+.=||
T Consensus 130 tLVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 130 TLVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp -------------------------------
T ss_pred eeeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 56777777776655544443 3344443333
No 127
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=24.53 E-value=41 Score=24.53 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=12.7
Q ss_pred hhhhhhhhhhhhhhHhhhhheeccccc
Q 042476 385 LYASMALGFVVGFWCFIGPLLVNRRWR 411 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (433)
.+++..-|+++++++++.++.++.||+
T Consensus 43 pyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 43 PYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred HHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 445545455554444444444444444
No 128
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=23.46 E-value=36 Score=29.13 Aligned_cols=14 Identities=7% Similarity=0.052 Sum_probs=5.7
Q ss_pred cchhhhhhhhceee
Q 042476 411 RYKYGHFLDGFVDR 424 (433)
Q Consensus 411 ~~~~~~~~~~~~~~ 424 (433)
|+.|....-|.-+.
T Consensus 127 Rrs~~~~~~rl~Ee 140 (202)
T PF06365_consen 127 RRSWSKKGQRLGEE 140 (202)
T ss_pred hccCCcchhhhccC
Confidence 33444444443333
No 129
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=23.11 E-value=32 Score=29.62 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=5.9
Q ss_pred hhhheecccccchh
Q 042476 401 IGPLLVNRRWRYKY 414 (433)
Q Consensus 401 ~~~~~~~~~~~~~~ 414 (433)
+++...+|+-+.||
T Consensus 202 v~i~~irR~i~lkY 215 (226)
T PHA02662 202 VAVSLLRRALRIRF 215 (226)
T ss_pred HHHHHHHHHhheee
Confidence 33344444444444
No 130
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=22.12 E-value=46 Score=34.69 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=18.9
Q ss_pred hhhhhhhhhhhhhhhhhHhhhhheeccccc
Q 042476 382 DWLLYASMALGFVVGFWCFIGPLLVNRRWR 411 (433)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (433)
+..+.++|..|.++++++++++++||+|+|
T Consensus 271 HT~fLl~ILG~~~livl~lL~vLl~yCrrk 300 (807)
T PF10577_consen 271 HTVFLLAILGGTALIVLILLCVLLCYCRRK 300 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333556666667676777777777766553
No 131
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=21.90 E-value=52 Score=21.49 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=11.1
Q ss_pred hhhhhhhhhhhhHhhhhheecc
Q 042476 387 ASMALGFVVGFWCFIGPLLVNR 408 (433)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~ 408 (433)
..+++.+++++++++++++|..
T Consensus 31 ~tVVlP~l~~~~~~Ivv~vy~k 52 (56)
T PF15012_consen 31 FTVVLPTLAAVFLFIVVFVYLK 52 (56)
T ss_pred eeEehhHHHHHHHHHhheeEEe
Confidence 3344445555555555555543
No 132
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=21.79 E-value=54 Score=25.55 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=3.0
Q ss_pred hhhhhhhH
Q 042476 392 GFVVGFWC 399 (433)
Q Consensus 392 ~~~~~~~~ 399 (433)
++.+++++
T Consensus 108 ~il~~i~i 115 (139)
T PHA03099 108 LVLVGIII 115 (139)
T ss_pred HHHHHHHH
Confidence 33333333
No 133
>PHA03265 envelope glycoprotein D; Provisional
Probab=21.43 E-value=28 Score=32.22 Aligned_cols=34 Identities=9% Similarity=-0.260 Sum_probs=15.8
Q ss_pred hHhhhhheecccccchhhhhh--hhceeeEEEEEEE
Q 042476 398 WCFIGPLLVNRRWRYKYGHFL--DGFVDRFCYFVRK 431 (433)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 431 (433)
+|.++.+++|||++-..++.- .-..+.-|+.+|+
T Consensus 363 ~vg~il~~~~rr~k~~~k~~~~~~~~~~~~~~~~~~ 398 (402)
T PHA03265 363 LVGVILYVCLRRKKELKKSAQNGLTRLRSTFKDVKY 398 (402)
T ss_pred hhhHHHHHHhhhhhhhhhhhhcCChhhhhhhcccce
Confidence 334444555666654333331 1234445566554
No 134
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=21.23 E-value=78 Score=29.88 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=13.2
Q ss_pred hhhhhhhhhhhhhHhhhhheeccccc
Q 042476 386 YASMALGFVVGFWCFIGPLLVNRRWR 411 (433)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (433)
+++++.|+-++++++.+++++.+|.|
T Consensus 322 i~~vgLG~P~l~li~Ggl~v~~~r~r 347 (350)
T PF15065_consen 322 IMAVGLGVPLLLLILGGLYVCLRRRR 347 (350)
T ss_pred HHHHHhhHHHHHHHHhhheEEEeccc
Confidence 34444455555555555555555544
No 135
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=21.12 E-value=1e+02 Score=25.86 Aligned_cols=6 Identities=0% Similarity=-0.047 Sum_probs=2.2
Q ss_pred hhhhhh
Q 042476 386 YASMAL 391 (433)
Q Consensus 386 ~~~~~~ 391 (433)
++++++
T Consensus 81 ivgvi~ 86 (179)
T PF13908_consen 81 IVGVIC 86 (179)
T ss_pred eeehhh
Confidence 333333
No 136
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=20.97 E-value=44 Score=27.01 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=5.4
Q ss_pred ccccchhhhhhh
Q 042476 408 RRWRYKYGHFLD 419 (433)
Q Consensus 408 ~~~~~~~~~~~~ 419 (433)
++++.+|++...
T Consensus 44 ~~~~~~yrr~Al 55 (146)
T PF14316_consen 44 RWRRNRYRREAL 55 (146)
T ss_pred HHHccHHHHHHH
Confidence 333444555433
No 137
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.52 E-value=61 Score=39.02 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=28.6
Q ss_pred EcCCCcCcCcCCcccCCCCCCCEEEccCCcCcc
Q 042476 59 KLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTG 91 (433)
Q Consensus 59 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 91 (433)
||++|+|+.+.+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578999998888889999999999999998873
No 138
>PHA03286 envelope glycoprotein E; Provisional
Probab=20.48 E-value=82 Score=30.44 Aligned_cols=12 Identities=42% Similarity=0.490 Sum_probs=5.0
Q ss_pred hhhhhhhhhhhh
Q 042476 385 LYASMALGFVVG 396 (433)
Q Consensus 385 ~~~~~~~~~~~~ 396 (433)
++..+++|++++
T Consensus 392 l~~s~~~~~~~~ 403 (492)
T PHA03286 392 LVSSMAAGAILV 403 (492)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 139
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.27 E-value=35 Score=30.70 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=15.2
Q ss_pred Hhhhhheecccccchhhhhhhhce
Q 042476 399 CFIGPLLVNRRWRYKYGHFLDGFV 422 (433)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~ 422 (433)
++++++++.+.|-+|.++..+++.
T Consensus 270 il~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 270 ILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred HHHHHHHHHHHHHHHhhccccccc
Confidence 344556667778766666666554
Done!