Query 042476
Match_columns 433
No_of_seqs 302 out of 3904
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 11:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.6E-43 1.2E-47 365.5 27.5 353 2-361 348-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-40 7.5E-45 344.5 23.4 344 1-353 298-720 (768)
3 2id5_A Lingo-1, leucine rich r 100.0 7.9E-37 2.7E-41 301.3 25.5 303 26-332 32-338 (477)
4 3v47_A TOLL-like receptor 5B a 100.0 6.4E-37 2.2E-41 300.3 22.9 322 25-349 29-407 (455)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-36 5.5E-41 318.6 24.8 84 261-348 475-558 (844)
6 3v47_A TOLL-like receptor 5B a 100.0 9.9E-37 3.4E-41 298.9 21.8 308 1-336 34-417 (455)
7 1ogq_A PGIP-2, polygalacturona 100.0 2.7E-36 9.1E-41 280.6 19.6 259 53-358 50-313 (313)
8 2id5_A Lingo-1, leucine rich r 100.0 1.3E-35 4.4E-40 292.7 24.7 316 28-350 13-333 (477)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-35 1.2E-39 298.1 27.9 340 1-349 36-557 (606)
10 4eco_A Uncharacterized protein 100.0 6E-36 2.1E-40 304.4 21.1 314 1-349 210-578 (636)
11 4eco_A Uncharacterized protein 100.0 2.2E-36 7.6E-41 307.6 17.5 296 42-346 198-545 (636)
12 3t6q_A CD180 antigen; protein- 100.0 1E-34 3.4E-39 294.9 29.2 341 1-351 37-463 (606)
13 3t6q_A CD180 antigen; protein- 100.0 1.1E-34 3.8E-39 294.6 28.1 276 55-351 256-537 (606)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-33 4.7E-38 290.3 29.2 202 148-349 403-621 (680)
15 2z7x_B TOLL-like receptor 1, v 100.0 8.4E-34 2.9E-38 282.8 25.8 144 1-162 4-150 (520)
16 2z63_A TOLL-like receptor 4, v 100.0 8.5E-34 2.9E-38 285.9 26.1 340 1-349 32-530 (570)
17 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-34 3.7E-39 269.8 16.7 253 26-329 50-306 (313)
18 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-33 4E-38 296.8 26.6 301 25-328 23-376 (844)
19 4ecn_A Leucine-rich repeat pro 100.0 6.6E-34 2.2E-38 294.9 22.7 313 1-349 452-818 (876)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-33 7.6E-38 282.2 25.5 332 1-353 35-466 (562)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-33 9.4E-38 281.6 26.1 314 1-349 56-509 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 2.3E-34 7.9E-39 298.3 18.6 290 50-347 445-786 (876)
23 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-33 9.5E-38 284.3 26.1 158 2-171 16-174 (606)
24 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-32 1.2E-36 280.0 28.9 347 1-353 226-600 (680)
25 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-33 1.9E-37 278.8 21.8 336 1-354 30-490 (549)
26 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-33 9.3E-38 281.0 19.1 172 3-185 11-183 (549)
27 2z63_A TOLL-like receptor 4, v 100.0 5.5E-32 1.9E-36 272.7 26.2 159 25-187 27-190 (570)
28 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-31 4.3E-36 273.3 28.5 341 1-349 56-579 (635)
29 3o6n_A APL1; leucine-rich repe 100.0 3.7E-32 1.3E-36 260.9 23.1 309 25-350 44-352 (390)
30 4fmz_A Internalin; leucine ric 100.0 1.3E-31 4.6E-36 253.0 25.3 298 2-350 49-346 (347)
31 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-32 5.1E-37 273.8 19.3 315 1-350 25-481 (520)
32 3oja_B Anopheles plasmodium-re 100.0 7.2E-32 2.5E-36 272.8 22.9 292 25-351 50-359 (597)
33 3o6n_A APL1; leucine-rich repe 100.0 1.7E-31 5.9E-36 256.3 22.7 293 51-354 43-335 (390)
34 1o6v_A Internalin A; bacterial 100.0 4.9E-31 1.7E-35 259.0 24.3 322 2-354 51-392 (466)
35 1xku_A Decorin; proteoglycan, 100.0 2.3E-30 7.9E-35 242.7 27.6 287 27-347 32-329 (330)
36 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-30 3.6E-35 245.2 25.2 287 26-347 33-330 (332)
37 1xku_A Decorin; proteoglycan, 100.0 3.2E-30 1.1E-34 241.7 27.3 268 52-350 30-306 (330)
38 3oja_B Anopheles plasmodium-re 100.0 4.1E-31 1.4E-35 267.2 22.7 295 51-356 49-343 (597)
39 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-30 1.1E-34 263.1 28.5 332 20-355 45-560 (635)
40 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-30 6E-35 243.7 24.1 267 52-350 32-307 (332)
41 1o6v_A Internalin A; bacterial 100.0 2.7E-30 9.1E-35 253.7 24.8 305 25-353 45-369 (466)
42 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-29 3.7E-34 247.9 25.8 271 1-328 46-353 (457)
43 4fmz_A Internalin; leucine ric 100.0 6.9E-30 2.4E-34 241.2 23.4 277 1-327 70-346 (347)
44 2z80_A TOLL-like receptor 2, v 100.0 1.9E-30 6.4E-35 245.6 18.1 282 25-333 30-320 (353)
45 2z66_A Variable lymphocyte rec 100.0 1.4E-29 4.9E-34 234.8 21.9 253 28-331 9-265 (306)
46 3zyi_A Leucine-rich repeat-con 100.0 3.4E-29 1.1E-33 244.9 25.5 253 27-332 55-308 (452)
47 3zyj_A Leucine-rich repeat-con 100.0 3.8E-29 1.3E-33 243.7 25.7 253 27-332 44-297 (440)
48 2z66_A Variable lymphocyte rec 100.0 8.6E-30 3E-34 236.2 17.6 274 2-332 12-292 (306)
49 4fcg_A Uncharacterized protein 100.0 2.4E-29 8.3E-34 235.1 18.9 227 52-327 80-314 (328)
50 3zyi_A Leucine-rich repeat-con 100.0 2.3E-28 7.9E-33 239.0 24.0 235 20-303 68-303 (452)
51 3zyj_A Leucine-rich repeat-con 100.0 2.2E-28 7.6E-33 238.3 23.5 234 21-303 58-292 (440)
52 1ozn_A Reticulon 4 receptor; N 100.0 1.4E-28 4.7E-33 225.7 18.8 224 29-303 14-238 (285)
53 4fcg_A Uncharacterized protein 100.0 1.3E-28 4.4E-33 230.2 18.8 225 26-303 81-314 (328)
54 3bz5_A Internalin-J, INLJ; leu 100.0 8E-28 2.7E-32 234.7 25.2 253 25-328 41-300 (457)
55 2z80_A TOLL-like receptor 2, v 100.0 3.6E-29 1.2E-33 236.8 15.1 276 3-307 37-318 (353)
56 1jl5_A Outer protein YOPM; leu 100.0 2.4E-27 8.1E-32 231.1 27.6 137 53-208 131-267 (454)
57 1ozn_A Reticulon 4 receptor; N 100.0 2.8E-28 9.5E-33 223.7 18.9 245 56-347 14-258 (285)
58 1jl5_A Outer protein YOPM; leu 100.0 2E-26 6.8E-31 224.6 28.3 282 25-352 90-372 (454)
59 3o53_A Protein LRIM1, AGAP0063 99.9 9.9E-29 3.4E-33 230.1 7.2 272 27-359 11-285 (317)
60 1wwl_A Monocyte differentiatio 99.9 3.5E-29 1.2E-33 232.6 3.3 248 26-328 43-310 (312)
61 1wwl_A Monocyte differentiatio 99.9 2.6E-28 8.9E-33 226.7 4.4 249 52-352 42-311 (312)
62 3o53_A Protein LRIM1, AGAP0063 99.9 9E-28 3.1E-32 223.6 7.6 247 25-333 33-282 (317)
63 1z7x_W Ribonuclease inhibitor; 99.9 5.1E-30 1.7E-34 251.6 -8.1 342 1-350 7-411 (461)
64 3g06_A SSPH2 (leucine-rich rep 99.9 3.2E-25 1.1E-29 222.7 25.3 259 1-332 44-302 (622)
65 3oja_A Leucine-rich immune mol 99.9 5E-27 1.7E-31 231.0 11.3 218 52-327 33-250 (487)
66 2z62_A TOLL-like receptor 4, v 99.9 1.8E-25 6.2E-30 203.9 20.3 211 53-333 28-243 (276)
67 3oja_A Leucine-rich immune mol 99.9 6.3E-27 2.1E-31 230.3 10.0 236 25-322 33-270 (487)
68 1z7x_W Ribonuclease inhibitor; 99.9 4.5E-29 1.5E-33 244.8 -5.5 323 1-328 32-412 (461)
69 2z62_A TOLL-like receptor 4, v 99.9 8.2E-25 2.8E-29 199.5 20.8 164 20-187 21-190 (276)
70 2o6q_A Variable lymphocyte rec 99.9 1.8E-24 6.2E-29 196.5 22.7 207 54-332 17-223 (270)
71 3g06_A SSPH2 (leucine-rich rep 99.9 6E-24 2E-28 213.5 25.6 259 27-352 41-299 (622)
72 2o6q_A Variable lymphocyte rec 99.9 1.4E-23 4.7E-28 190.7 22.6 154 27-187 17-170 (270)
73 1p9a_G Platelet glycoprotein I 99.9 8.3E-24 2.8E-28 193.9 20.3 204 51-330 8-211 (290)
74 3rfs_A Internalin B, repeat mo 99.9 1.3E-24 4.6E-29 197.6 13.7 203 75-333 39-241 (272)
75 3rfs_A Internalin B, repeat mo 99.9 1.8E-23 6.2E-28 190.1 17.7 228 27-315 20-247 (272)
76 4glp_A Monocyte differentiatio 99.9 9E-25 3.1E-29 202.7 9.1 230 52-328 63-308 (310)
77 1p9a_G Platelet glycoprotein I 99.9 4.8E-23 1.7E-27 188.8 20.4 153 25-187 9-161 (290)
78 2ca6_A RAN GTPase-activating p 99.9 8.2E-26 2.8E-30 216.4 -1.7 242 51-331 30-320 (386)
79 3goz_A Leucine-rich repeat-con 99.9 6.4E-25 2.2E-29 208.2 3.2 180 2-187 3-209 (362)
80 2ast_B S-phase kinase-associat 99.9 1.4E-24 4.9E-29 203.8 5.6 251 27-333 48-312 (336)
81 2xwt_C Thyrotropin receptor; s 99.9 1.4E-22 4.7E-27 180.7 17.0 132 53-187 31-169 (239)
82 2xwt_C Thyrotropin receptor; s 99.9 1.7E-22 5.7E-27 180.1 17.3 196 78-324 32-236 (239)
83 3m19_A Variable lymphocyte rec 99.9 2E-22 6.9E-27 181.0 16.5 117 244-360 109-232 (251)
84 4glp_A Monocyte differentiatio 99.9 1.2E-22 4.3E-27 188.2 13.3 232 26-304 64-308 (310)
85 2ast_B S-phase kinase-associat 99.9 4.5E-24 1.5E-28 200.3 3.1 252 2-312 52-315 (336)
86 2ca6_A RAN GTPase-activating p 99.9 2E-24 6.8E-29 206.7 0.7 239 25-307 31-320 (386)
87 3m19_A Variable lymphocyte rec 99.9 1.4E-21 4.9E-26 175.4 18.8 176 2-189 19-194 (251)
88 3goz_A Leucine-rich repeat-con 99.9 8.9E-24 3.1E-28 200.3 2.6 257 30-329 2-299 (362)
89 1h6u_A Internalin H; cell adhe 99.9 1.3E-21 4.4E-26 181.1 15.7 80 243-328 152-231 (308)
90 1h6u_A Internalin H; cell adhe 99.9 1.7E-21 5.9E-26 180.2 15.6 192 52-304 40-231 (308)
91 4ay9_X Follicle-stimulating ho 99.9 8.9E-21 3E-25 178.8 19.6 240 29-324 12-256 (350)
92 3ogk_B Coronatine-insensitive 99.9 1.3E-24 4.3E-29 219.9 -7.4 325 25-352 163-528 (592)
93 4ay9_X Follicle-stimulating ho 99.8 5E-21 1.7E-25 180.5 13.8 241 56-347 12-256 (350)
94 2o6s_A Variable lymphocyte rec 99.8 1.5E-20 5E-25 163.8 15.5 85 53-137 28-112 (208)
95 2o6s_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 160.9 16.7 129 56-188 10-138 (208)
96 3ogk_B Coronatine-insensitive 99.8 6.5E-23 2.2E-27 207.4 -5.9 343 1-351 116-502 (592)
97 3cvr_A Invasion plasmid antige 99.8 1.2E-19 4E-24 180.3 16.5 186 54-312 60-252 (571)
98 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.6E-24 179.8 16.6 182 78-332 60-248 (571)
99 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.3E-24 171.6 13.2 157 27-186 40-201 (361)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 7.2E-19 2.5E-23 154.3 14.8 155 28-189 13-168 (220)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 6.3E-19 2.2E-23 154.6 14.3 89 244-332 83-171 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 1.4E-18 4.9E-23 152.3 15.8 153 28-187 13-165 (220)
103 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4E-23 152.9 15.2 156 128-331 14-169 (220)
104 3e6j_A Variable lymphocyte rec 99.8 3.1E-18 1.1E-22 151.2 17.0 156 27-190 20-175 (229)
105 2p1m_B Transport inhibitor res 99.8 2.7E-21 9.3E-26 195.5 -3.4 339 1-349 109-518 (594)
106 2p1m_B Transport inhibitor res 99.8 9.9E-22 3.4E-26 198.8 -7.8 301 25-327 155-519 (594)
107 1m9s_A Internalin B; cell inva 99.8 2.6E-19 8.8E-24 179.6 9.7 192 27-282 22-213 (605)
108 2xot_A Amphoterin-induced prot 99.8 1.2E-18 4.2E-23 164.8 13.7 178 80-329 21-204 (361)
109 1m9s_A Internalin B; cell inva 99.8 6.9E-19 2.4E-23 176.5 11.8 148 25-188 42-189 (605)
110 3e6j_A Variable lymphocyte rec 99.8 4.3E-18 1.5E-22 150.3 15.4 158 127-333 21-178 (229)
111 1h6t_A Internalin B; cell adhe 99.8 1.8E-18 6.2E-23 158.5 13.2 58 243-304 157-214 (291)
112 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5.3E-23 158.9 12.3 80 243-328 135-214 (291)
113 4ezg_A Putative uncharacterize 99.7 9E-18 3.1E-22 144.7 11.9 152 25-187 43-194 (197)
114 1dce_A Protein (RAB geranylger 99.7 1.6E-20 5.6E-25 187.2 -8.1 90 241-333 462-552 (567)
115 1xeu_A Internalin C; cellular 99.7 1.3E-18 4.5E-23 156.9 4.8 123 53-187 19-141 (263)
116 4ezg_A Putative uncharacterize 99.7 2.4E-17 8.3E-22 142.0 12.0 80 244-327 114-194 (197)
117 1dce_A Protein (RAB geranylger 99.7 1.6E-20 5.4E-25 187.3 -11.4 197 74-321 346-567 (567)
118 4b8c_D Glucose-repressible alc 99.7 2.7E-18 9.4E-23 176.4 4.6 165 25-196 172-338 (727)
119 1xeu_A Internalin C; cellular 99.7 1.5E-17 5E-22 150.1 8.8 80 244-329 108-187 (263)
120 1w8a_A SLIT protein; signaling 99.7 5.6E-17 1.9E-21 139.0 11.2 91 242-332 54-144 (192)
121 3sb4_A Hypothetical leucine ri 99.7 4.5E-17 1.6E-21 152.0 11.1 100 25-134 48-157 (329)
122 1w8a_A SLIT protein; signaling 99.7 5.3E-17 1.8E-21 139.2 10.6 111 27-140 30-141 (192)
123 4b8c_D Glucose-repressible alc 99.7 7.5E-18 2.5E-22 173.2 4.4 150 52-208 172-326 (727)
124 2ell_A Acidic leucine-rich nuc 99.7 2.1E-16 7.1E-21 132.4 10.7 133 52-187 23-160 (168)
125 2ell_A Acidic leucine-rich nuc 99.7 2.7E-16 9.2E-21 131.8 10.8 137 25-168 23-164 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 3.7E-16 1.3E-20 128.1 9.1 126 53-181 17-147 (149)
127 2wfh_A SLIT homolog 2 protein 99.6 2.1E-15 7.2E-20 129.2 13.5 127 29-163 13-139 (193)
128 2je0_A Acidic leucine-rich nuc 99.6 5.7E-16 1.9E-20 127.0 9.2 129 25-159 16-149 (149)
129 2wfh_A SLIT homolog 2 protein 99.6 2.5E-15 8.4E-20 128.7 13.3 127 56-187 13-139 (193)
130 2o6r_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 125.2 13.3 85 53-137 28-112 (177)
131 4fdw_A Leucine rich hypothetic 99.6 5.8E-14 2E-18 133.9 22.1 244 54-324 136-380 (401)
132 2o6r_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 124.8 13.3 130 2-142 12-141 (177)
133 3sb4_A Hypothetical leucine ri 99.6 1.1E-14 3.9E-19 135.7 13.0 90 240-331 224-314 (329)
134 4fdw_A Leucine rich hypothetic 99.6 2.4E-13 8.1E-18 129.7 20.9 242 52-327 112-358 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.6E-14 5.6E-19 121.8 10.1 129 52-186 18-152 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6E-19 121.6 9.8 131 25-163 18-153 (176)
137 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 115.4 11.7 92 242-333 30-121 (170)
138 3g39_A Variable lymphocyte rec 99.5 2E-13 6.9E-18 114.2 11.8 106 27-138 10-115 (170)
139 2r9u_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 112.7 11.7 92 242-333 33-124 (174)
140 1ds9_A Outer arm dynein; leuci 99.4 5.3E-16 1.8E-20 133.6 -7.1 145 27-180 19-180 (198)
141 2r9u_A Variable lymphocyte rec 99.4 6.9E-13 2.3E-17 111.4 12.0 104 28-137 14-117 (174)
142 1ds9_A Outer arm dynein; leuci 99.4 8.1E-16 2.8E-20 132.5 -7.7 147 52-204 17-180 (198)
143 4fs7_A Uncharacterized protein 99.4 7.2E-12 2.5E-16 119.7 18.0 83 238-323 293-375 (394)
144 4fs7_A Uncharacterized protein 99.3 7.2E-11 2.5E-15 112.7 17.3 282 25-319 70-393 (394)
145 3un9_A NLR family member X1; l 99.3 9.1E-14 3.1E-18 131.3 -3.9 65 263-327 180-252 (372)
146 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 127.4 -1.7 164 25-189 71-254 (372)
147 2ifg_A High affinity nerve gro 99.2 3.2E-11 1.1E-15 113.1 10.2 89 242-331 31-120 (347)
148 4gt6_A Cell surface protein; l 99.2 1.9E-09 6.6E-14 102.8 20.9 80 240-322 263-342 (394)
149 2ifg_A High affinity nerve gro 99.2 7.5E-11 2.6E-15 110.6 10.8 102 30-137 12-115 (347)
150 4gt6_A Cell surface protein; l 99.1 4.7E-09 1.6E-13 100.1 19.7 267 27-327 65-370 (394)
151 2ra8_A Uncharacterized protein 98.9 4.3E-10 1.5E-14 105.3 3.9 83 241-325 251-341 (362)
152 2ra8_A Uncharacterized protein 98.9 5.9E-10 2E-14 104.4 3.5 65 264-328 250-321 (362)
153 4h09_A Hypothetical leucine ri 98.9 3.3E-07 1.1E-11 86.7 21.9 123 25-159 45-167 (379)
154 4h09_A Hypothetical leucine ri 98.7 1.6E-06 5.4E-11 82.0 20.9 264 25-323 68-342 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 8.2E-09 2.8E-13 87.2 -0.2 114 50-163 33-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 9.4E-08 3.2E-12 80.7 2.4 118 69-187 28-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 9.9E-07 3.4E-11 78.3 6.0 80 98-180 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.2 7.1E-07 2.4E-11 79.3 4.8 81 74-156 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 4.9E-07 1.7E-11 74.6 0.4 83 243-325 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 5.5E-06 1.9E-10 68.2 3.4 14 171-184 136-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 1.6E-05 5.4E-10 66.8 0.8 110 52-162 40-169 (197)
162 3rfe_A Platelet glycoprotein I 97.3 0.00066 2.3E-08 53.1 6.9 59 270-330 12-71 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00032 1.1E-08 58.9 2.8 115 72-186 36-169 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0023 7.9E-08 49.9 6.4 36 54-89 32-67 (130)
165 2ks1_B Epidermal growth factor 90.8 0.088 3E-06 31.7 1.3 27 387-413 15-41 (44)
166 2jwa_A Receptor tyrosine-prote 90.6 0.059 2E-06 32.3 0.4 29 385-413 13-41 (44)
167 2l2t_A Receptor tyrosine-prote 90.5 0.094 3.2E-06 31.4 1.2 28 387-414 14-41 (44)
168 2k1k_A Ephrin type-A receptor 88.3 0.24 8.4E-06 28.7 1.8 21 385-405 12-32 (38)
169 1iij_A ERBB-2 receptor protein 82.6 0.4 1.4E-05 27.0 0.8 25 386-410 10-34 (35)
170 2l9u_A Receptor tyrosine-prote 81.6 0.34 1.2E-05 26.7 0.3 25 387-411 10-34 (40)
171 2lz0_A Uncharacterized protein 69.8 12 0.00042 26.9 6.1 45 65-110 8-52 (100)
172 2k9y_A Ephrin type-A receptor 69.0 2.4 8.2E-05 24.9 1.7 6 404-409 34-39 (41)
173 2lz0_A Uncharacterized protein 61.1 10 0.00035 27.4 4.2 45 89-134 8-52 (100)
174 2l34_A TYRO protein tyrosine k 50.0 6.7 0.00023 21.8 1.2 24 385-408 8-31 (33)
175 2klu_A T-cell surface glycopro 34.6 10 0.00035 24.6 0.4 15 389-403 12-26 (70)
176 2l6w_A Beta-type platelet-deri 40.7 8.3 0.00029 22.1 0.0 6 409-414 33-38 (39)
177 2llm_A Amyloid beta A4 protein 34.8 12 0.00041 22.0 0.0 21 386-406 19-40 (43)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.6e-43 Score=365.47 Aligned_cols=353 Identities=35% Similarity=0.525 Sum_probs=246.0
Q ss_pred EEeecccCcccCCCCCCCCCCCCCC-CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPF-EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
|++++|.+++.+|+.... ++ +|++|++++|.+++.++..++. ..+++|++|++++|.+++.+|..+.++++|+
T Consensus 348 L~Ls~n~l~~~~p~~l~~-----l~~~L~~L~Ls~N~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTN-----LSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421 (768)
T ss_dssp EECCSSEEEECCCTTHHH-----HTTTCSEEECCSSEEEEECCTTTTC-STTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred EeCcCCccCccccHHHHh-----hhcCCcEEEccCCCcCCCcChhhhh-cccCCccEEECCCCccccccCHHHhcCCCCC
Confidence 677777777666643211 22 5666666666666655554422 2245566666666666666666666666666
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 160 (433)
+|++++|.+.+..|..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N 500 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNN 500 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSS
T ss_pred EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCC
Confidence 666666666666666666666666666666666666666666666666666666666555555554 5666666666666
Q ss_pred cccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc--ccccccCCc------------ee----
Q 042476 161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA--IYYFVTRGN------------IV---- 222 (433)
Q Consensus 161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~------------~~---- 222 (433)
.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+++.+... ++..+.... ..
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence 666666666666666666666666666666666666666666666555321 111110000 00
Q ss_pred --------------------------------eecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCce
Q 042476 223 --------------------------------FEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQT 270 (433)
Q Consensus 223 --------------------------------~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 270 (433)
.........+..+..++.++.|+.|++++|.+++.+|..++++++|+.
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence 000001112333445566788999999999999999999999999999
Q ss_pred EeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC-cC
Q 042476 271 LNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DL 349 (433)
Q Consensus 271 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l 349 (433)
|+|++|+++|.+|..++.+++|+.||+++|++++.+|..+..+++|+.|++++|+++|.+|...++.++....+.|| .+
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CCCCCCCCCCCC
Q 042476 350 CGAPLPDCTEKN 361 (433)
Q Consensus 350 ~~~~~~~c~~~~ 361 (433)
||.|++.|....
T Consensus 741 cg~~l~~C~~~~ 752 (768)
T 3rgz_A 741 CGYPLPRCDPSN 752 (768)
T ss_dssp ESTTSCCCCSCC
T ss_pred cCCCCcCCCCCc
Confidence 999988886544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-40 Score=344.51 Aligned_cols=344 Identities=32% Similarity=0.463 Sum_probs=212.5
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCcc-ccCCCCCCCccEEEcCCCcCcCcCCcccCCCC-C
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHL-ICNGDNKSVIISLKLSKNYFSGDIPDCWMNWP-H 78 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~ 78 (433)
+|||++|.+++.+|.... . +++|++|++++|.++|.+|.. + ..+++|++|++++|.+.+.+|..+.+++ +
T Consensus 298 ~L~Ls~n~l~~~~p~~~~-~----l~~L~~L~L~~n~l~~~ip~~~l---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFG-S----CSLLESLALSSNNFSGELPMDTL---LKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp EEECCSSEEEECCCGGGG-G----CTTCCEEECCSSEEEEECCHHHH---TTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred EEECcCCcCCCccchHHh-c----CCCccEEECCCCcccCcCCHHHH---hcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 378888888887774322 1 446666777766666655543 4 3366666666666666655555555544 5
Q ss_pred CCEEEccCCcCcccCCcccCC--CCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEE
Q 042476 79 LQVLNLDDNYFTGNLPISIGT--LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILN 156 (433)
Q Consensus 79 L~~L~L~~n~i~~~~p~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 156 (433)
|++|++++|.+.+..|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+. .+++|++|+
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ 448 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLK 448 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEE
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEE
Confidence 555555555555444444433 44455555555555444444444555555555555544444444433 344444444
Q ss_pred eeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc--ccccccC-Cceeeeccee-eecc
Q 042476 157 LRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA--IYYFVTR-GNIVFEDASV-VTKG 232 (433)
Q Consensus 157 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~--~~~~~~~-~~~~~~~~~~-~~~~ 232 (433)
+++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+++.+... ++..+.. .......+.. ...+
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 4444444444444444444444444444444444444444444444444444321 1111000 0000000000 0123
Q ss_pred ceeehhhhccceeEEEcccCcccccCCcc---------------------------------------------------
Q 042476 233 LLVEYNSILNLVRSIDISKNNFSGEIPMQ--------------------------------------------------- 261 (433)
Q Consensus 233 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~--------------------------------------------------- 261 (433)
..+..+..+++|+.|++++|.+++.+|..
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 34455666778888888888777655543
Q ss_pred -------------------ccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476 262 -------------------LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS 322 (433)
Q Consensus 262 -------------------~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 322 (433)
+..+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|||+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 4446789999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCC-cccCccCcccccCCcCCCCC
Q 042476 323 ENDLSGQIPSS-TQLQSFGASCFSGNDLCGAP 353 (433)
Q Consensus 323 ~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~ 353 (433)
+|+++|.+|.. ..++.++.+++++|+++|..
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 99999999976 66788999999999998753
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-37 Score=301.34 Aligned_cols=303 Identities=20% Similarity=0.151 Sum_probs=188.9
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476 26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS 105 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 105 (433)
+++++|++++|++++..+..| .++++|++|+|++|.+++..|..|.++++|++|+|++|.+....+..|.++++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEF---ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTT---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCcEEECCCCccceECHhHc---cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 467777777777776665555 44677777777777777666777777777777777777776544455667777777
Q ss_pred EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCc
Q 042476 106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN 185 (433)
Q Consensus 106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 185 (433)
|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhc-cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 7777777776666667777777777777776643333333 366777777777777665444556677777777777777
Q ss_pred CcccCCCCccccccccccccccccccccc--c-ccCCceeeecceee-eccceeehhhhccceeEEEcccCcccccCCcc
Q 042476 186 LSGTIPRCINNFTAMATINSSNQKNAIYY--F-VTRGNIVFEDASVV-TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ 261 (433)
Q Consensus 186 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 261 (433)
+.+..+..+..+++|+.|+++.+...... . ..........+... ........+..+++|+.|++++|.+++..+..
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence 76555566666777777666654311000 0 00000000000000 11111123445666777777777777666666
Q ss_pred ccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC
Q 042476 262 LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS 332 (433)
Q Consensus 262 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 332 (433)
+..+++|+.|+|++|++++..|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.+.++.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 67777777777777777766677777777777777777777666666666777777777777777665443
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.4e-37 Score=300.25 Aligned_cols=322 Identities=21% Similarity=0.155 Sum_probs=190.9
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCc-CCcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGD-IPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L 103 (433)
++++++|++++|.+++..+..+ .++++|++|++++|.+.+. .+..|.++++|++|++++|.+.+..|..|.++++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSF---SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTT---SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CCccCEEEecCCccCcCChhHh---ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 4577888888887777666666 4577788888887777643 35667777888888888887776667777778888
Q ss_pred CEEEccCCcccccCCcc--ccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCC--CCcCEE
Q 042476 104 RSLHLRNNRLAGIFPVS--LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHL--TFLRIL 179 (433)
Q Consensus 104 ~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L 179 (433)
++|++++|.+++..+.. +..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+..+..+..+ .+|+.|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 88888888777544433 77777888888888877655566545567788888888877776666655544 455555
Q ss_pred EccCCcCcccCCCC--------ccccccccccccccccccc--ccccc----CC--------------------------
Q 042476 180 DVAHNNLSGTIPRC--------INNFTAMATINSSNQKNAI--YYFVT----RG-------------------------- 219 (433)
Q Consensus 180 ~l~~n~~~~~~p~~--------~~~l~~L~~L~l~~~~~~~--~~~~~----~~-------------------------- 219 (433)
++++|.+.+..+.. +..+++|+.|+++.+.... +..+. ..
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 55555554322221 1133445555544442110 00000 00
Q ss_pred ----------ceeeeccee-eeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCC
Q 042476 220 ----------NIVFEDASV-VTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN 288 (433)
Q Consensus 220 ----------~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 288 (433)
......+.. ......+..+..+++|++|++++|.+++..|..+.++++|++|+|++|++++..+..+..
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 000000000 001112233444556666666666666555556666666666666666665555556666
Q ss_pred CCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcccccCCcC
Q 042476 289 MRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDL 349 (433)
Q Consensus 289 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l 349 (433)
+++|+.|++++|++++..|..+..+++|+.|++++|++++..+.. ..++.++.+++++|++
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 666666666666666555666666666666666666666543332 3455566666666654
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=318.57 Aligned_cols=84 Identities=24% Similarity=0.345 Sum_probs=53.6
Q ss_pred cccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccC
Q 042476 261 QLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFG 340 (433)
Q Consensus 261 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~ 340 (433)
.|.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+. ++|+.|++++|++++.+|.. +..+.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~ 550 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLS 550 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCC
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcC
Confidence 355556666666666666666666666666677777776666655555444 56667777777776665543 45666
Q ss_pred cccccCCc
Q 042476 341 ASCFSGND 348 (433)
Q Consensus 341 ~~~~~~n~ 348 (433)
.+++++|+
T Consensus 551 ~l~l~~Np 558 (844)
T 3j0a_A 551 VLDITHNK 558 (844)
T ss_dssp EEEEEEEC
T ss_pred EEEecCCC
Confidence 77777773
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.9e-37 Score=298.88 Aligned_cols=308 Identities=19% Similarity=0.199 Sum_probs=249.4
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCC-ccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSII-HLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHL 79 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 79 (433)
+|||++|.+++..|+... . +++|++|++++|.+.+.++ ..+ .++++|++|++++|.+.+..|..|.++++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~-~----l~~L~~L~L~~n~~~~~i~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFS-R----LQDLQFLKVEQQTPGLVIRNNTF---RGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp EEECCSSCCCEECTTTTS-S----CTTCCEEECCCCSTTCEECTTTT---TTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred EEEecCCccCcCChhHhc-c----CccccEEECcCCcccceECcccc---cccccCCEEeCCCCccCccChhhccCcccC
Confidence 489999999988774322 2 6789999999999976654 445 558999999999999998889999999999
Q ss_pred CEEEccCCcCcccCCcc--cCCCCCcCEEEccCCcccccCCcc-ccCCCCCcEEECcCccccccCChhhhh---------
Q 042476 80 QVLNLDDNYFTGNLPIS--IGTLSSLRSLHLRNNRLAGIFPVS-LKNCSSLISLDIGENDFFGSIPTWVGE--------- 147 (433)
Q Consensus 80 ~~L~L~~n~i~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~--------- 147 (433)
++|++++|.+.+..+.. |.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 99999999998755554 899999999999999999887776 889999999999999986655544431
Q ss_pred ------------------------cCCCccEEEeeCccccccCCcccc--------------------------------
Q 042476 148 ------------------------RFPRLLILNLRSNKFNGSLPVQLC-------------------------------- 171 (433)
Q Consensus 148 ------------------------~l~~L~~L~L~~n~l~~~~~~~l~-------------------------------- 171 (433)
.+++|++|++++|.+.+..+..+.
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 235677777777766543322211
Q ss_pred -------CCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccce
Q 042476 172 -------HLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLV 244 (433)
Q Consensus 172 -------~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 244 (433)
..++|+.|++++|.+.+..|..+..+++|+.|+++.+.. ....+..+..+++|
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--------------------~~~~~~~~~~l~~L 325 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI--------------------NKIDDNAFWGLTHL 325 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--------------------CEECTTTTTTCTTC
T ss_pred ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc--------------------cccChhHhcCcccC
Confidence 124677788888888777777788888888888777641 12223345568899
Q ss_pred eEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCC
Q 042476 245 RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN 324 (433)
Q Consensus 245 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 324 (433)
++|++++|.+++..+..+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 99999999999888889999999999999999999888999999999999999999999877778899999999999999
Q ss_pred cCcccCCCCccc
Q 042476 325 DLSGQIPSSTQL 336 (433)
Q Consensus 325 ~l~~~~p~~~~~ 336 (433)
+++|.+|....+
T Consensus 406 ~l~~~~~~~~~l 417 (455)
T 3v47_A 406 PWDCSCPRIDYL 417 (455)
T ss_dssp CBCCCTTTTHHH
T ss_pred CcccCCCcchHH
Confidence 999999865433
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.7e-36 Score=280.64 Aligned_cols=259 Identities=29% Similarity=0.580 Sum_probs=231.3
Q ss_pred CCccEEEcCCCcCcC--cCCcccCCCCCCCEEEccC-CcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcE
Q 042476 53 SVIISLKLSKNYFSG--DIPDCWMNWPHLQVLNLDD-NYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLIS 129 (433)
Q Consensus 53 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 129 (433)
.+++.|++++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 678999999999988 7888999999999999994 8888888999999999999999999998888888999999999
Q ss_pred EECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCC-CcCEEEccCCcCcccCCCCccccccccccccccc
Q 042476 130 LDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT-FLRILDVAHNNLSGTIPRCINNFTAMATINSSNQ 208 (433)
Q Consensus 130 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 208 (433)
|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+..|..+..+
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l----------- 197 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----------- 197 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----------
Confidence 99999998777887776 799999999999999888898998888 89999999999887777655432
Q ss_pred cccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCC
Q 042476 209 KNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN 288 (433)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 288 (433)
+ |+.|++++|.+++..|..+..+++|+.|+|++|++++.++. +..
T Consensus 198 ---------------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~ 242 (313)
T 1ogq_A 198 ---------------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL 242 (313)
T ss_dssp ---------------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC
T ss_pred ---------------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc
Confidence 2 77889999999988899999999999999999999877666 788
Q ss_pred CCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC-cCCCCCCCCCC
Q 042476 289 MRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN-DLCGAPLPDCT 358 (433)
Q Consensus 289 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~c~ 358 (433)
+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|....++.++.+++++| .+||.|.+.|.
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999989999999999999 59998887773
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=292.69 Aligned_cols=316 Identities=19% Similarity=0.163 Sum_probs=255.6
Q ss_pred ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476 28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH 107 (433)
Q Consensus 28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 107 (433)
-+.++.++++++. +|..+ .++++.|++++|++++..+..|.++++|++|+|++|.+.+..|.+|.++++|++|+
T Consensus 13 ~~~v~c~~~~l~~-ip~~~-----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 86 (477)
T 2id5_A 13 DRAVLCHRKRFVA-VPEGI-----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86 (477)
T ss_dssp TTEEECCSCCCSS-CCSCC-----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCc-CCCCC-----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEE
Confidence 3578888888874 55555 56899999999999988899999999999999999999988899999999999999
Q ss_pred ccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476 108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
+++|.+....+..|..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 99999997777788999999999999999965555554 48999999999999999888889999999999999999998
Q ss_pred ccCCCCcccccccccccccccccccccc--cc-CCceeeecceee-eccceeehhhhccceeEEEcccCcccccCCcccc
Q 042476 188 GTIPRCINNFTAMATINSSNQKNAIYYF--VT-RGNIVFEDASVV-TKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLT 263 (433)
Q Consensus 188 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 263 (433)
+..+..+..+++|+.|+++.+....... +. ........+... .....+.......+|+.|++++|.+++..+..+.
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 6555678899999999988765322111 00 000000001000 0111111222234799999999999865556788
Q ss_pred CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcc
Q 042476 264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGAS 342 (433)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~ 342 (433)
.+++|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..+.. ..++.++.+
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 9999999999999999888888999999999999999999988999999999999999999999755543 456788999
Q ss_pred cccCCcCC
Q 042476 343 CFSGNDLC 350 (433)
Q Consensus 343 ~~~~n~l~ 350 (433)
++++|++.
T Consensus 326 ~l~~N~l~ 333 (477)
T 2id5_A 326 ILDSNPLA 333 (477)
T ss_dssp ECCSSCEE
T ss_pred EccCCCcc
Confidence 99999663
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-35 Score=298.13 Aligned_cols=340 Identities=18% Similarity=0.141 Sum_probs=213.5
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+|||++|.+++..|.... . +++|++|++++|.+++..|..| .++++|++|++++|.+++..|..|.++++|+
T Consensus 36 ~L~Ls~n~l~~~~~~~~~-~----l~~L~~L~Ls~n~l~~i~~~~~---~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFS-N----FSELQWLDLSRCEIETIEDKAW---HGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp EEECTTSCCCEECTTTTT-T----CTTCCEEECTTCCCCEECTTTT---TTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred EEECCCCCcCEeChhhcc-C----CccCcEEeCCCCcccccCHHHh---hchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 367788888766553221 1 5567777777777776666665 4477777777777777766677777777777
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccc-cCCccccCCCCCcEEECcCccccccCChhh--------------
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG-IFPVSLKNCSSLISLDIGENDFFGSIPTWV-------------- 145 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-------------- 145 (433)
+|++++|.+.+..+..|+++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..+
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceee
Confidence 77777777765555667777777777777777664 346667777777777766665532211100
Q ss_pred -------------h------------------------------------------------------------------
Q 042476 146 -------------G------------------------------------------------------------------ 146 (433)
Q Consensus 146 -------------~------------------------------------------------------------------ 146 (433)
+
T Consensus 188 l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred ccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 0
Q ss_pred -------------------------------------------------------------------------------h
Q 042476 147 -------------------------------------------------------------------------------E 147 (433)
Q Consensus 147 -------------------------------------------------------------------------------~ 147 (433)
.
T Consensus 268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~ 347 (606)
T 3vq2_A 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV 347 (606)
T ss_dssp ECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCC
T ss_pred ccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhc
Confidence 0
Q ss_pred cCCCccEEEeeCcccccc--CCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccc---c-cCCce
Q 042476 148 RFPRLLILNLRSNKFNGS--LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYF---V-TRGNI 221 (433)
Q Consensus 148 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~---~-~~~~~ 221 (433)
.+++|++|++++|.+.+. .+..+..+++|++|++++|.+. .+|..+..+++|+.|+++.+....... + .....
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 123444444444444433 2556677888999999999887 566888889999999888775221110 0 00000
Q ss_pred eeeccee-eeccceeehhhhccceeEEEcccCcccc-cCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcC
Q 042476 222 VFEDASV-VTKGLLVEYNSILNLVRSIDISKNNFSG-EIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFST 299 (433)
Q Consensus 222 ~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 299 (433)
....+.. ......+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++..|..+..+++|+.|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 0000000 0112223344556677777777777765 3566777777777777777777766777777777777777777
Q ss_pred CcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccC-ccCcccccCCcC
Q 042476 300 NRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQ-SFGASCFSGNDL 349 (433)
Q Consensus 300 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~l~~~~~~~n~l 349 (433)
|++++.+|..+..+++|+.|++++|+++...+....++ .++.+++++|++
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 77777667777777777777777777774333334444 366677777755
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6e-36 Score=304.42 Aligned_cols=314 Identities=19% Similarity=0.255 Sum_probs=225.0
Q ss_pred CEEeecccCccc-----------------CCCCCC-CCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCC
Q 042476 1 ELNLSNNQIYGV-----------------IPYFDH-RPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSK 62 (433)
Q Consensus 1 ~L~ls~n~l~~~-----------------~~~~~~-~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~ 62 (433)
+|||++|.|++. +|+... .. +++|++|++++|.+.+.+|..+ .++++|++|++++
T Consensus 210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~----l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN----LKDLTDVEVYNCPNLTKLPTFL---KALPEMQLINVAC 282 (636)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG----CTTCCEEEEECCTTCSSCCTTT---TTCSSCCEEECTT
T ss_pred EEECcCCccccccccccccccccchhcccCchhhhhcc----cCCCCEEEecCCcCCccChHHH---hcCCCCCEEECcC
Confidence 489999999985 663211 02 6689999999999999999887 5699999999999
Q ss_pred Cc-CcC-cCCcccCCC------CCCCEEEccCCcCcccCCc--ccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476 63 NY-FSG-DIPDCWMNW------PHLQVLNLDDNYFTGNLPI--SIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI 132 (433)
Q Consensus 63 n~-l~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 132 (433)
|+ +++ .+|..+.++ ++|++|++++|.++ .+|. .++++++|++|++++|.+.+.+| .+..+++|++|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 98 887 788887776 89999999999999 7888 89999999999999999998888 8899999999999
Q ss_pred cCccccccCChhhhhcCCC-ccEEEeeCccccccCCccccCCC--CcCEEEccCCcCcccCCCCcc-------ccccccc
Q 042476 133 GENDFFGSIPTWVGERFPR-LLILNLRSNKFNGSLPVQLCHLT--FLRILDVAHNNLSGTIPRCIN-------NFTAMAT 202 (433)
Q Consensus 133 ~~n~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p~~~~-------~l~~L~~ 202 (433)
++|.+. .+|..+. .+++ |++|++++|.+. .+|..+..++ +|+.|++++|.+.+..|..+. .+++|+.
T Consensus 361 ~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 361 AYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 999985 8888876 7888 999999999998 7788777655 899999999999988888887 7788999
Q ss_pred cccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcc-ccCC-------ccCceEeCc
Q 042476 203 INSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ-LTNL-------EGLQTLNLS 274 (433)
Q Consensus 203 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~-~~~l-------~~L~~L~Ls 274 (433)
|+++.+... ......+..+++|+.|++++|.++ .+|.. +... ++|+.|+|+
T Consensus 438 L~Ls~N~l~--------------------~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 438 INLSNNQIS--------------------KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp EECCSSCCC--------------------SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECC
T ss_pred EECcCCccC--------------------cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECc
Confidence 988887522 111112223445555555555555 22222 2211 155555555
Q ss_pred CcccccCCCcccC--CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC------cCCcCcccCCCC-cccCccCccccc
Q 042476 275 HNFFVGKIPENIG--NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL------SENDLSGQIPSS-TQLQSFGASCFS 345 (433)
Q Consensus 275 ~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L------~~n~l~~~~p~~-~~~~~l~~~~~~ 345 (433)
+|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|.. ..++.++.++++
T Consensus 497 ~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 55555 4444444 55555555555555554 4555555555555555 234444444432 344555555555
Q ss_pred CCcC
Q 042476 346 GNDL 349 (433)
Q Consensus 346 ~n~l 349 (433)
+|.+
T Consensus 575 ~N~l 578 (636)
T 4eco_A 575 SNDI 578 (636)
T ss_dssp SSCC
T ss_pred CCcC
Confidence 5555
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.2e-36 Score=307.60 Aligned_cols=296 Identities=18% Similarity=0.215 Sum_probs=215.9
Q ss_pred CCccccCCCCCCCccEEEcCCCcCcCc-----------------CCcccC--CCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476 42 IIHLICNGDNKSVIISLKLSKNYFSGD-----------------IPDCWM--NWPHLQVLNLDDNYFTGNLPISIGTLSS 102 (433)
Q Consensus 42 ~~~~~~~~~~~~~L~~L~L~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~ 102 (433)
+|..+ .++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..|+++++
T Consensus 198 ip~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKAV---MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp ECGGG---GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CCHHH---hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 45555 5588889999998888875 888888 8889999999998888888888888899
Q ss_pred cCEEEccCCc-ccc-cCCccccCC------CCCcEEECcCccccccCCh--hhhhcCCCccEEEeeCccccccCCccccC
Q 042476 103 LRSLHLRNNR-LAG-IFPVSLKNC------SSLISLDIGENDFFGSIPT--WVGERFPRLLILNLRSNKFNGSLPVQLCH 172 (433)
Q Consensus 103 L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 172 (433)
|++|++++|. +++ .+|..++.+ ++|++|++++|.+. .+|. .+. .+++|++|++++|.+.+.+| .+..
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCC
Confidence 9999999887 877 777777765 88899999988885 7877 555 78889999999888887788 8888
Q ss_pred CCCcCEEEccCCcCcccCCCCcccccc-cccccccccccc-ccccccCC---ceeeecceee-eccceeehhh-------
Q 042476 173 LTFLRILDVAHNNLSGTIPRCINNFTA-MATINSSNQKNA-IYYFVTRG---NIVFEDASVV-TKGLLVEYNS------- 239 (433)
Q Consensus 173 l~~L~~L~l~~n~~~~~~p~~~~~l~~-L~~L~l~~~~~~-~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~------- 239 (433)
+++|++|++++|.+. .+|..+..+++ |+.|+++.+... ++..+... ......+... ..+..+..+.
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 888888999888888 78888888888 888888877532 11111100 0111011000 1111222222
Q ss_pred hccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCC-C-------CCCCEEeCcCCcCCCCCCcccc
Q 042476 240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGN-M-------RSIESLDFSTNRLFGRIPQSMS 311 (433)
Q Consensus 240 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l-------~~L~~L~Ls~n~l~~~~~~~l~ 311 (433)
.+.+|+.|++++|.+++..+..+..+++|+.|+|++|+++ .+|..... . ++|+.|++++|+++ .+|..+.
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 508 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR 508 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence 4557888888888888444444556788888888888887 55543322 2 28888999988887 6777776
Q ss_pred --CCCCCCeeeCcCCcCcccCCCCcccCccCcccccC
Q 042476 312 --SLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSG 346 (433)
Q Consensus 312 --~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~ 346 (433)
.+++|+.|++++|++++.++....++.++.+++++
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCS
T ss_pred hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCC
Confidence 88889999999999887333446677888888854
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-34 Score=294.87 Aligned_cols=341 Identities=20% Similarity=0.138 Sum_probs=242.1
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+|||++|.|++..|... +. +++|++|++++|.+++..|..| .++++|++|++++|.+.+..|..|.++++|+
T Consensus 37 ~L~Ls~n~i~~~~~~~~-~~----l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTF-SR----LINLTFLDLTRCQIYWIHEDTF---QSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp EEECTTCCCSEECTTTS-TT----CTTCSEEECTTCCCCEECTTTT---TTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred EEEccCCccCcCChhHh-cc----CccceEEECCCCccceeChhhc---cCccccCeeeCCCCcccccChhhhccccccc
Confidence 47889999987766422 22 6688888888888888777777 5588888888888888877888888888888
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCcc--EEEee
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLL--ILNLR 158 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~--~L~L~ 158 (433)
+|++++|.+.+..+..|.++++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+. .+++|+ .|+++
T Consensus 109 ~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLN 187 (606)
T ss_dssp EEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECT
T ss_pred EeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecC
Confidence 888888888866677788888888888888888765434445578888888888877433333333 566666 55555
Q ss_pred Cccccc--------------------------------------------------------------------------
Q 042476 159 SNKFNG-------------------------------------------------------------------------- 164 (433)
Q Consensus 159 ~n~l~~-------------------------------------------------------------------------- 164 (433)
+|.+.+
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 555443
Q ss_pred -cCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccc--cccc-CCceeeecceee-ec-cceeehh
Q 042476 165 -SLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIY--YFVT-RGNIVFEDASVV-TK-GLLVEYN 238 (433)
Q Consensus 165 -~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--~~~~-~~~~~~~~~~~~-~~-~~~~~~~ 238 (433)
..+..+..+++|++|++++|.++ .+|..+..+++|+.|+++.+..... ..+. ........+... .. ......+
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 23334666777888888888777 6777777778888887776643211 0100 000111111110 01 1122335
Q ss_pred hhccceeEEEcccCcccccC--CccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCc-cccCCCC
Q 042476 239 SILNLVRSIDISKNNFSGEI--PMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQ-SMSSLSF 315 (433)
Q Consensus 239 ~~~~~L~~L~L~~n~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~ 315 (433)
..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++|+.|++++|++++..+. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 66788888888888887665 67788888899999999988878888888889999999999988776554 4788889
Q ss_pred CCeeeCcCCcCcccCCCC-cccCccCcccccCCcCCC
Q 042476 316 LNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCG 351 (433)
Q Consensus 316 L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~ 351 (433)
|+.|++++|.+++..|.. ..++.++.+++++|.+.+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 999999999988776653 567788888999987765
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-34 Score=294.58 Aligned_cols=276 Identities=22% Similarity=0.268 Sum_probs=153.1
Q ss_pred ccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcC
Q 042476 55 IISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGE 134 (433)
Q Consensus 55 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 134 (433)
|+.|++++|.+++..+..|.++++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 444444444444444445566666666666666666 5566666666666666666666655566666666666666666
Q ss_pred ccccccCChhhhhcCCCccEEEeeCccccccC--CccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc
Q 042476 135 NDFFGSIPTWVGERFPRLLILNLRSNKFNGSL--PVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI 212 (433)
Q Consensus 135 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 212 (433)
|.+.+.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|+++.+....
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 66655555554445666666666666666443 5556666666666666666665566666666666666666554110
Q ss_pred cccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccC---CCcccCCC
Q 042476 213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGK---IPENIGNM 289 (433)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~l 289 (433)
......+..+++|+.|++++|.+++..|..+..+++|++|++++|++++. .+..+..+
T Consensus 415 -------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 415 -------------------KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp -------------------CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred -------------------cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 00111233345555555555555555555555555555555555555431 12334555
Q ss_pred CCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcccccCCcCCC
Q 042476 290 RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCG 351 (433)
Q Consensus 290 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~ 351 (433)
++|+.|++++|++++..|..+..+++|+.|++++|++++..|.. ..++.+ .+++++|.+.+
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 55555555555555555555555555555555555555444322 233334 44555554443
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-33 Score=290.34 Aligned_cols=202 Identities=16% Similarity=0.089 Sum_probs=115.1
Q ss_pred cCCCccEEEeeCccccccCC-ccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc----ccccc-CCce
Q 042476 148 RFPRLLILNLRSNKFNGSLP-VQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI----YYFVT-RGNI 221 (433)
Q Consensus 148 ~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~----~~~~~-~~~~ 221 (433)
.+++|+.|++++|.+.+.++ ..+.++++|+.|++++|.+.+..+..+..+++|+.|++..+.... +..+. ....
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 45555555555555554333 345555555555555555554444455555555555544433110 00000 0000
Q ss_pred eeeccee-eeccceeehhhhccceeEEEcccCcccccCC--------ccccCCccCceEeCcCcccccCCCcccCCCCCC
Q 042476 222 VFEDASV-VTKGLLVEYNSILNLVRSIDISKNNFSGEIP--------MQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI 292 (433)
Q Consensus 222 ~~~~~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 292 (433)
...++.. .........+..+++|++|++++|.+++..+ ..+.++++|+.|+|++|+++...+..|..+++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 0000000 0112222334556777888888887765321 236677788888888888774444567778888
Q ss_pred CEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCc--ccCccCcccccCCcC
Q 042476 293 ESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSST--QLQSFGASCFSGNDL 349 (433)
Q Consensus 293 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~~~l~~~~~~~n~l 349 (433)
+.|++++|++++..+..+..+++|+.|++++|++++..+... .++.++.+++++|++
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 888888888876666667778888888888888876555432 466777777777754
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=282.77 Aligned_cols=144 Identities=19% Similarity=0.104 Sum_probs=110.9
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+||+++|.++ .+|.- + .+++++|++++|.+++..+..+ .++++|++|++++|++++..|..|.++++|+
T Consensus 4 ~l~ls~n~l~-~ip~~----~---~~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKD----L---SQKTTILNISQNYISELWTSDI---LSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp EEECTTSCCS-SCCCS----C---CTTCSEEECCSSCCCCCCHHHH---TTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred eEecCCCCcc-ccccc----c---cccccEEECCCCcccccChhhc---cccccccEEecCCCccCCcChHHhhcccCCC
Confidence 4899999999 56631 1 2579999999999988777777 5588999999999999888888899999999
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccc-cCCccccCCCCCcEEECcCccccccCChhhhhcCCCc--cEEEe
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG-IFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRL--LILNL 157 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L--~~L~L 157 (433)
+|++++|+++ .+|.. .+++|++|++++|.+++ ..|..++.+++|++|++++|.+.+ .. +..+++| ++|++
T Consensus 73 ~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 73 YLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLL 145 (520)
T ss_dssp EEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEE
T ss_pred EEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEe
Confidence 9999999888 46655 78899999999998886 367888888899998888887743 11 1234444 66666
Q ss_pred eCccc
Q 042476 158 RSNKF 162 (433)
Q Consensus 158 ~~n~l 162 (433)
++|.+
T Consensus 146 ~~n~l 150 (520)
T 2z7x_B 146 VLGET 150 (520)
T ss_dssp EECTT
T ss_pred ecccc
Confidence 55555
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-34 Score=285.93 Aligned_cols=340 Identities=21% Similarity=0.162 Sum_probs=208.5
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+|||++|.+++..+.... . +++|++|++++|++++..+..+ .++++|++|++++|.+++..|..|.++++|+
T Consensus 32 ~L~Ls~n~l~~~~~~~~~-~----l~~L~~L~Ls~n~i~~i~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFF-S----FPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp EEECCSCCCCEECTTTTT-T----CSSCCEEECTTCCCCEECTTTT---TTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred EEEccCCccCccChhHhh-C----CCCceEEECCCCcCCccCcccc---cCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 378888888876553222 1 5578888888888777666666 4577888888888877766667777777777
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccc-cCCccccCCCCCcEEECcCccccccCChhh--------------
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAG-IFPVSLKNCSSLISLDIGENDFFGSIPTWV-------------- 145 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-------------- 145 (433)
+|++++|.+....+..|+++++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..+
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 77777777775444467777777777777777765 356777777777777777765532211110
Q ss_pred --------------------------------------------------------------------------------
Q 042476 146 -------------------------------------------------------------------------------- 145 (433)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (433)
T Consensus 184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence
Q ss_pred --------------hhcCCCccEEEeeCccccccCCccc-----------------------------------------
Q 042476 146 --------------GERFPRLLILNLRSNKFNGSLPVQL----------------------------------------- 170 (433)
Q Consensus 146 --------------~~~l~~L~~L~L~~n~l~~~~~~~l----------------------------------------- 170 (433)
+..+++|++|++++|.+. .+|..+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence 112345555555555443 222211
Q ss_pred -cCCCCcCEEEccCCcCcccC--CCCccccccccccccccccccccc-cc-cCCceeeecceee-ecc-ceeehhhhccc
Q 042476 171 -CHLTFLRILDVAHNNLSGTI--PRCINNFTAMATINSSNQKNAIYY-FV-TRGNIVFEDASVV-TKG-LLVEYNSILNL 243 (433)
Q Consensus 171 -~~l~~L~~L~l~~n~~~~~~--p~~~~~l~~L~~L~l~~~~~~~~~-~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~~ 243 (433)
..+++|++|++++|.+.+.. +..+..+++|+.|+++.+...... .+ .........+... ... .....+..+++
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 35678888889888887443 567788899999998887522110 00 0000000000000 001 11123445566
Q ss_pred eeEEEcccCcccccCCccccCCccCceEeCcCcccc-cCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476 244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFV-GKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS 322 (433)
Q Consensus 244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 322 (433)
|++|++++|.+++..|..+.++++|+.|++++|+++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 666666666666666666666666666666666665 4566666666666666666666666666666666666667776
Q ss_pred CCcCcccCCCC-cccCccCcccccCCcC
Q 042476 323 ENDLSGQIPSS-TQLQSFGASCFSGNDL 349 (433)
Q Consensus 323 ~n~l~~~~p~~-~~~~~l~~~~~~~n~l 349 (433)
+|++++.+|.. ..++.++.+++++|++
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 66666654432 4455666666666655
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-34 Score=269.81 Aligned_cols=253 Identities=23% Similarity=0.394 Sum_probs=229.8
Q ss_pred CCccEEEccCCcccc--cCCccccCCCCCCCccEEEcCC-CcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476 26 FEFGLLDLSNNALSG--SIIHLICNGDNKSVIISLKLSK-NYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS 102 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~ 102 (433)
.+++.|++++|.+++ .+|..+ .++++|++|++++ |.+.+.+|..|.++++|++|++++|.+.+..|..|.++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l---~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL---ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG---GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhH---hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 589999999999998 888888 5599999999995 9999999999999999999999999999999999999999
Q ss_pred cCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCC-CccEEEeeCccccccCCccccCCCCcCEEEc
Q 042476 103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP-RLLILNLRSNKFNGSLPVQLCHLTFLRILDV 181 (433)
Q Consensus 103 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 181 (433)
|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .++ +|++|++++|.+.+.+|..+..++ |+.|++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 99999999999999999999999999999999999889999888 676 999999999999999999999987 999999
Q ss_pred cCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcc
Q 042476 182 AHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQ 261 (433)
Q Consensus 182 ~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 261 (433)
++|.+.+..|..+..+ ++|+.|++++|.+++..|.
T Consensus 205 s~N~l~~~~~~~~~~l--------------------------------------------~~L~~L~L~~N~l~~~~~~- 239 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSD--------------------------------------------KNTQKIHLAKNSLAFDLGK- 239 (313)
T ss_dssp CSSEEEECCGGGCCTT--------------------------------------------SCCSEEECCSSEECCBGGG-
T ss_pred cCCcccCcCCHHHhcC--------------------------------------------CCCCEEECCCCceeeecCc-
Confidence 9999987766655544 4478888899988866665
Q ss_pred ccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCccc
Q 042476 262 LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQ 329 (433)
Q Consensus 262 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 329 (433)
+..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+.
T Consensus 240 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 788899999999999999999999999999999999999999999886 8899999999999984443
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=296.85 Aligned_cols=301 Identities=19% Similarity=0.155 Sum_probs=207.8
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcC-CcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDI-PDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L 103 (433)
++++++|++++|.+++..+..+ .++++|++|++++|...+.+ |..|.++++|++|+|++|.+.+..|.+|.++++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~---~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSF---PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSC---SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCCcCEEECCCCcCCccChhHC---cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 4578888888888877777666 45788888888887544343 6778888888888888888887777788888888
Q ss_pred CEEEccCCcccccCCcc--ccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCC--CCcCEE
Q 042476 104 RSLHLRNNRLAGIFPVS--LKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHL--TFLRIL 179 (433)
Q Consensus 104 ~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L 179 (433)
++|++++|.+.+..+.. +..+++|++|++++|.+.+..+...+.++++|++|++++|.+.+..+..+..+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 88888888877655544 77788888888888877554443344478888888888888776666666665 677777
Q ss_pred EccCCcCcccCCCCcccccc------cccccccccccc--ccccccC---------------------------------
Q 042476 180 DVAHNNLSGTIPRCINNFTA------MATINSSNQKNA--IYYFVTR--------------------------------- 218 (433)
Q Consensus 180 ~l~~n~~~~~~p~~~~~l~~------L~~L~l~~~~~~--~~~~~~~--------------------------------- 218 (433)
++++|.+.+..|..+..+.+ |+.|+++.+... .+..+..
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 88777777666666555544 677776665211 0000000
Q ss_pred ------Cceeeecce-eeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCC
Q 042476 219 ------GNIVFEDAS-VVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRS 291 (433)
Q Consensus 219 ------~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 291 (433)
.......+. .......+..+..+++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 000000000 0011122334556777888888888887777777888888888888888887777777888888
Q ss_pred CCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc
Q 042476 292 IESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG 328 (433)
Q Consensus 292 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 328 (433)
|+.|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 8888888888877677777778888888888887774
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.6e-34 Score=294.89 Aligned_cols=313 Identities=17% Similarity=0.192 Sum_probs=225.1
Q ss_pred CEEeecccCcc-----------------cCCCCCC-CCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCC
Q 042476 1 ELNLSNNQIYG-----------------VIPYFDH-RPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSK 62 (433)
Q Consensus 1 ~L~ls~n~l~~-----------------~~~~~~~-~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~ 62 (433)
+|||++|.|++ .+|+... .. +++|++|++++|.+.+.+|..+ .++++|+.|++++
T Consensus 452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~----L~~L~~L~Ls~N~l~~~iP~~l---~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN----LKDLTDVELYNCPNMTQLPDFL---YDLPELQSLNIAC 524 (876)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG----CTTCCEEEEESCTTCCSCCGGG---GGCSSCCEEECTT
T ss_pred EEECcCCcCCCCcccccccccccccccccCChhhhhcc----CCCCCEEECcCCCCCccChHHH---hCCCCCCEEECcC
Confidence 48999999998 2663211 12 6689999999999999999888 5599999999999
Q ss_pred Cc-CcC-cCCcccC-------CCCCCCEEEccCCcCcccCCc--ccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 63 NY-FSG-DIPDCWM-------NWPHLQVLNLDDNYFTGNLPI--SIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 63 n~-l~~-~~~~~~~-------~l~~L~~L~L~~n~i~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
|+ +++ .+|..+. .+++|++|++++|.+. .+|. .|.++++|+.|++++|.+. .+| .+..+++|++|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 98 887 6776554 4459999999999999 8888 8999999999999999998 777 899999999999
Q ss_pred CcCccccccCChhhhhcCCC-ccEEEeeCccccccCCccccCCCC--cCEEEccCCcCcccCCCCc---c--cccccccc
Q 042476 132 IGENDFFGSIPTWVGERFPR-LLILNLRSNKFNGSLPVQLCHLTF--LRILDVAHNNLSGTIPRCI---N--NFTAMATI 203 (433)
Q Consensus 132 L~~n~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~~~~p~~~---~--~l~~L~~L 203 (433)
+++|.+. .+|..+. .+++ |++|++++|.+. .+|..+..++. |+.|++++|.+.+.+|... . .+.+|+.|
T Consensus 602 Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp CCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred CcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 9999995 8888876 6888 999999999998 77888777654 9999999999987665322 2 33478888
Q ss_pred ccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC--------CccCceEeCcC
Q 042476 204 NSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN--------LEGLQTLNLSH 275 (433)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~--------l~~L~~L~Ls~ 275 (433)
+++.+... ......+..+++|+.|++++|.++ .+|..+.. +++|+.|+|++
T Consensus 679 ~Ls~N~L~--------------------~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 679 TLSYNEIQ--------------------KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp ECCSSCCC--------------------SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred EccCCcCC--------------------ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence 88877522 111112233455666666666665 33332211 22566666666
Q ss_pred cccccCCCcccC--CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcC------CcCcccCCCC-cccCccCcccccC
Q 042476 276 NFFVGKIPENIG--NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE------NDLSGQIPSS-TQLQSFGASCFSG 346 (433)
Q Consensus 276 n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~------n~l~~~~p~~-~~~~~l~~~~~~~ 346 (433)
|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++ |++.+.+|.. ..++.++.+++++
T Consensus 738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 6665 5555554 56666666666666654 555556666666666654 5555555533 4455566666666
Q ss_pred CcC
Q 042476 347 NDL 349 (433)
Q Consensus 347 n~l 349 (433)
|.+
T Consensus 816 N~L 818 (876)
T 4ecn_A 816 NDI 818 (876)
T ss_dssp SCC
T ss_pred CCC
Confidence 655
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-33 Score=282.22 Aligned_cols=332 Identities=21% Similarity=0.188 Sum_probs=219.7
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
++|+++|.+++ +|.- + .+++++|++++|.+++..+..+ .++++|++|++++|.+++..|+.|.++++|+
T Consensus 35 ~l~ls~~~L~~-ip~~----~---~~~L~~L~Ls~N~i~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 35 MVDYSNRNLTH-VPKD----L---PPRTKALSLSQNSISELRMPDI---SFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp EEECTTSCCCS-CCTT----S---CTTCCEEECCSSCCCCCCGGGT---TTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred EEEcCCCCCcc-CCCC----C---CCCcCEEECCCCCccccChhhh---ccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 37899999995 6631 1 3589999999999998877777 5699999999999999988899999999999
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCccccc-CCccccCCCCCcEEECcCccccccCChhhhhcCCCc--cEEEe
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRL--LILNL 157 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L--~~L~L 157 (433)
+|++++|.++ .+|.. .+++|++|++++|.+.+. .|..++++++|++|++++|.+.+. .+ ..+++| ++|++
T Consensus 104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~-~~l~~L~L~~L~L 176 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DL-LPVAHLHLSCILL 176 (562)
T ss_dssp EEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TT-GGGTTSCEEEEEE
T ss_pred EEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---ch-hhhhhceeeEEEe
Confidence 9999999999 56666 799999999999999864 467899999999999999988542 12 245555 99999
Q ss_pred eCccc--cccCCccccCCC-------------------------------------------------------------
Q 042476 158 RSNKF--NGSLPVQLCHLT------------------------------------------------------------- 174 (433)
Q Consensus 158 ~~n~l--~~~~~~~l~~l~------------------------------------------------------------- 174 (433)
++|.+ .+..|..+..+.
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 99988 555555544432
Q ss_pred --------------------CcCEEEccCCcCcccCCCCc-----cccccccccccccccccccccc-----cCCceeee
Q 042476 175 --------------------FLRILDVAHNNLSGTIPRCI-----NNFTAMATINSSNQKNAIYYFV-----TRGNIVFE 224 (433)
Q Consensus 175 --------------------~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~~ 224 (433)
+|++|++++|.+.+.+|..+ ..++.|+.+++..+...++... ..... .
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L--~ 334 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI--K 334 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC--S
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc--e
Confidence 45566666666665666555 4444444444333321111000 00000 0
Q ss_pred cceeeeccceee-hhhhccceeEEEcccCcccccCCccccCCccCceEeCcCccccc--CCCcccCCCCCCCEEeCcCCc
Q 042476 225 DASVVTKGLLVE-YNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVG--KIPENIGNMRSIESLDFSTNR 301 (433)
Q Consensus 225 ~~~~~~~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~ 301 (433)
............ ....+++|++|++++|.+++..|..+.++++|+.|++++|++++ .+|..+..+++|+.|++++|+
T Consensus 335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred EEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 000000000000 11446677777777777776677777777777777777777764 234556777777777777777
Q ss_pred CCCCCCc-cccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCC
Q 042476 302 LFGRIPQ-SMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAP 353 (433)
Q Consensus 302 l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~ 353 (433)
+++.+|. .+..+++|+.|++++|++++.+|.... +.++.+++++|.+...|
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~~ip 466 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIMSIP 466 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCCCCC
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCcccC
Confidence 7663443 456666666666666666655443311 35555666666555443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.7e-33 Score=281.55 Aligned_cols=314 Identities=19% Similarity=0.193 Sum_probs=228.9
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+|||++|.+++..|+.. +. +++|++|++++|++++..|..+ .++++|++|++++|.++ .+|.. .+++|+
T Consensus 56 ~L~Ls~N~i~~~~~~~~-~~----l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~ 124 (562)
T 3a79_B 56 ALSLSQNSISELRMPDI-SF----LSELRVLRLSHNRIRSLDFHVF---LFNQDLEYLDVSHNRLQ-NISCC--PMASLR 124 (562)
T ss_dssp EEECCSSCCCCCCGGGT-TT----CTTCCEEECCSCCCCEECTTTT---TTCTTCCEEECTTSCCC-EECSC--CCTTCS
T ss_pred EEECCCCCccccChhhh-cc----CCCccEEECCCCCCCcCCHHHh---CCCCCCCEEECCCCcCC-ccCcc--ccccCC
Confidence 48999999997766322 22 6689999999999998888877 55899999999999998 45655 799999
Q ss_pred EEEccCCcCccc-CCcccCCCCCcCEEEccCCcccccCCccccCCCCC--cEEECcCccc--cccCChhhhh--------
Q 042476 81 VLNLDDNYFTGN-LPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSL--ISLDIGENDF--FGSIPTWVGE-------- 147 (433)
Q Consensus 81 ~L~L~~n~i~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~~~~-------- 147 (433)
+|++++|.+.+. .|..|+++++|++|++++|.+... .+..+++| ++|++++|.+ .+..|..+..
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 999999999863 468899999999999999998753 34444555 8888877766 3333222210
Q ss_pred ------------------------------------------------------------------------cCCCccEE
Q 042476 148 ------------------------------------------------------------------------RFPRLLIL 155 (433)
Q Consensus 148 ------------------------------------------------------------------------~l~~L~~L 155 (433)
..++|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 11267777
Q ss_pred EeeCccccccCCccc-----------------------------------------------------cCCCCcCEEEcc
Q 042476 156 NLRSNKFNGSLPVQL-----------------------------------------------------CHLTFLRILDVA 182 (433)
Q Consensus 156 ~L~~n~l~~~~~~~l-----------------------------------------------------~~l~~L~~L~l~ 182 (433)
++++|.+.+.+|..+ ..+++|++|+++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~ 361 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT 361 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECC
Confidence 777777776666544 566777778888
Q ss_pred CCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCc-c
Q 042476 183 HNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPM-Q 261 (433)
Q Consensus 183 ~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~ 261 (433)
+|.+++..|..+..+++|+.|+++.+.... ....+..+..+++|+.|++++|.+++.+|. .
T Consensus 362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKN------------------FFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp SSCCCTTTTTTCCSCSSCCEEECCSSCCCB------------------TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred CCccccchhhhhcccCCCCEEECCCCCcCC------------------cccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 877777677777777777777777654110 001122345577888888888888874443 4
Q ss_pred ccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC-CcccCccC
Q 042476 262 LTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS-STQLQSFG 340 (433)
Q Consensus 262 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~~l~ 340 (433)
+..+++|+.|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+. ...++.++
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCC
T ss_pred hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCC
Confidence 77788888888888888776666554 68888888888886 5666666888888888888888853333 45677788
Q ss_pred cccccCCcC
Q 042476 341 ASCFSGNDL 349 (433)
Q Consensus 341 ~~~~~~n~l 349 (433)
.+++++|++
T Consensus 501 ~L~l~~N~~ 509 (562)
T 3a79_B 501 YIWLHDNPW 509 (562)
T ss_dssp CEECCSCCB
T ss_pred EEEecCCCc
Confidence 888888865
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-34 Score=298.28 Aligned_cols=290 Identities=18% Similarity=0.186 Sum_probs=223.0
Q ss_pred CCCCCccEEEcCCCcCcC-----------------cCCcccC--CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccC
Q 042476 50 DNKSVIISLKLSKNYFSG-----------------DIPDCWM--NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRN 110 (433)
Q Consensus 50 ~~~~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 110 (433)
.++++|+.|+|++|.+++ .+|..+. ++++|++|+|++|.+.+.+|..|.++++|++|++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 568899999999999987 3888877 999999999999999889999999999999999999
Q ss_pred Cc-ccc-cCCccccCC-------CCCcEEECcCccccccCCh--hhhhcCCCccEEEeeCccccccCCccccCCCCcCEE
Q 042476 111 NR-LAG-IFPVSLKNC-------SSLISLDIGENDFFGSIPT--WVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179 (433)
Q Consensus 111 n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 179 (433)
|. +++ .+|..+..+ ++|++|++++|.+. .+|. .+. .+++|++|++++|.+. .+| .+..+++|+.|
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ-KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL 600 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT-TCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh-cCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence 98 887 677766554 49999999999986 8887 555 7999999999999998 777 88999999999
Q ss_pred EccCCcCcccCCCCcccccc-cccccccccccc-ccccccCCc---eeeecceee-eccceee---hhh--hccceeEEE
Q 042476 180 DVAHNNLSGTIPRCINNFTA-MATINSSNQKNA-IYYFVTRGN---IVFEDASVV-TKGLLVE---YNS--ILNLVRSID 248 (433)
Q Consensus 180 ~l~~n~~~~~~p~~~~~l~~-L~~L~l~~~~~~-~~~~~~~~~---~~~~~~~~~-~~~~~~~---~~~--~~~~L~~L~ 248 (433)
++++|.+. .+|..+..+++ |+.|+++.+... ++..+.... .....+... ..+..+. ... ..++|+.|+
T Consensus 601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred ECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 99999998 88888999988 999998887633 111111100 111111110 0111111 111 234799999
Q ss_pred cccCcccccCCcc-ccCCccCceEeCcCcccccCCCcccCC--------CCCCCEEeCcCCcCCCCCCcccc--CCCCCC
Q 042476 249 ISKNNFSGEIPMQ-LTNLEGLQTLNLSHNFFVGKIPENIGN--------MRSIESLDFSTNRLFGRIPQSMS--SLSFLN 317 (433)
Q Consensus 249 L~~n~~~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~l~~--------l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~ 317 (433)
+++|.++ .+|.. +..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+
T Consensus 680 Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~ 756 (876)
T 4ecn_A 680 LSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLS 756 (876)
T ss_dssp CCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCC
T ss_pred ccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcC
Confidence 9999998 45544 457899999999999998 66654433 238999999999998 7788776 899999
Q ss_pred eeeCcCCcCcccCCCCcccCccCcccccCC
Q 042476 318 HLNLSENDLSGQIPSSTQLQSFGASCFSGN 347 (433)
Q Consensus 318 ~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n 347 (433)
.|++++|++++.++....++.++.+++++|
T Consensus 757 ~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp EEECCSSCCSSCCCGGGGCTTCCEEECCCC
T ss_pred EEEeCCCCCCccchhhhcCCCCCEEECCCC
Confidence 999999999984444577888999988764
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-33 Score=284.26 Aligned_cols=158 Identities=22% Similarity=0.217 Sum_probs=135.5
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV 81 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (433)
+|.+++.++ .+|.- + .+++++|++++|.+++..+..+ .++++|++|++++|.+++..|.+|.++++|++
T Consensus 16 ~~c~~~~l~-~ip~~----~---~~~l~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDD----I---PSSTKNIDLSFNPLKILKSYSF---SNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp EECTTSCCS-SCCTT----S---CTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred eEccCCCcc-cCCCC----C---CCCcCEEECCCCCcCEeChhhc---cCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence 455666666 33421 1 4689999999999998888777 56999999999999999888999999999999
Q ss_pred EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccc-cCChhhhhcCCCccEEEeeCc
Q 042476 82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG-SIPTWVGERFPRLLILNLRSN 160 (433)
Q Consensus 82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n 160 (433)
|++++|.+.+..|.+|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..+. ++++|++|++++|
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYN 163 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSS
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCC
Confidence 9999999998889999999999999999999998887889999999999999999854 5677776 8999999999999
Q ss_pred cccccCCcccc
Q 042476 161 KFNGSLPVQLC 171 (433)
Q Consensus 161 ~l~~~~~~~l~ 171 (433)
.+.+..+..+.
T Consensus 164 ~l~~~~~~~~~ 174 (606)
T 3vq2_A 164 YIQTITVNDLQ 174 (606)
T ss_dssp CCCEECTTTTH
T ss_pred cceecChhhhh
Confidence 88765554443
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-32 Score=279.97 Aligned_cols=347 Identities=19% Similarity=0.145 Sum_probs=268.6
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+|++++|.+++..|....+ ++ .++|++|++++|.+++..+..+ ..+++|++|++++|.+.+..|..|.++++|+
T Consensus 226 ~L~L~~n~l~~~~~~~~~~-l~--~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (680)
T 1ziw_A 226 NLSLSNSQLSTTSNTTFLG-LK--WTNLTMLDLSYNNLNVVGNDSF---AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299 (680)
T ss_dssp EEECTTSCCCEECTTTTGG-GG--GSCCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSCCBSEECTTTTTTCTTCC
T ss_pred EEEccCCcccccChhHhhc-cC--cCCCCEEECCCCCcCccCcccc---cCcccccEeeCCCCccCccChhhhcCCCCcc
Confidence 3788889888877753321 11 2459999999999998887777 5589999999999999999999999999999
Q ss_pred EEEccCCcCcc-----cCCc----ccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCcccc-ccCChhhhhc--
Q 042476 81 VLNLDDNYFTG-----NLPI----SIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF-GSIPTWVGER-- 148 (433)
Q Consensus 81 ~L~L~~n~i~~-----~~p~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~-- 148 (433)
+|++++|...+ .+|. .|..+++|++|++++|.+.+..+..|..+++|++|++++|.+. ..++...+..
T Consensus 300 ~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~ 379 (680)
T 1ziw_A 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379 (680)
T ss_dssp EEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT
T ss_pred EEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc
Confidence 99999876543 2333 7889999999999999999988888999999999999998752 2334333322
Q ss_pred CCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCC-CCccccccccccccccccccccc--ccc----CCce
Q 042476 149 FPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIP-RCINNFTAMATINSSNQKNAIYY--FVT----RGNI 221 (433)
Q Consensus 149 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~--~~~----~~~~ 221 (433)
.++|+.|++++|++.+..+.++..+++|+.|++++|.+.+.+| ..+..+++|+.++++.+...... .+. ....
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 3689999999999998889999999999999999999987666 67889999999999887622110 000 0000
Q ss_pred eeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCC--------cccCCCCCCC
Q 042476 222 VFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP--------ENIGNMRSIE 293 (433)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~l~~l~~L~ 293 (433)
..........+..+..+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..+ ..+..+++|+
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 00000000113345566778899999999999998777888999999999999999875422 2378889999
Q ss_pred EEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-cccCccCcccccCCcCCCCC
Q 042476 294 SLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCGAP 353 (433)
Q Consensus 294 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~ 353 (433)
.|++++|+++...+..|..+++|+.|++++|++++..+.. ..++.++.+++++|.+.+.+
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 9999999998655567899999999999999999655543 46788899999998776543
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-33 Score=278.78 Aligned_cols=336 Identities=20% Similarity=0.180 Sum_probs=210.5
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+|||++|.+++..|.... . +++|++|++++|++++..+..+ .++++|++|++++|.+++..+..|.++++|+
T Consensus 30 ~L~Ls~n~l~~~~~~~~~-~----l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLR-A----CANLQVLILKSSRINTIEGDAF---YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp EEECCSSCCCEECSSTTS-S----CTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred EEECcCCccCccChhhhh-c----CCcccEEECCCCCcCccChhhc---cccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 478999999877664222 2 5578888888888877766666 4477888888888887766666677778888
Q ss_pred EEEccCCcCcc-cCCcccCCCCCcCEEEccCCc-ccccCCccccCCCCCcEEECcCccccccCChhh-------------
Q 042476 81 VLNLDDNYFTG-NLPISIGTLSSLRSLHLRNNR-LAGIFPVSLKNCSSLISLDIGENDFFGSIPTWV------------- 145 (433)
Q Consensus 81 ~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~------------- 145 (433)
+|++++|.+.+ ..|..+.++++|++|++++|. +....+..+..+++|++|++++|.+.+..|..+
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 88888877774 245667777777777777776 333333556667777777777666654444333
Q ss_pred ----------hhcCCCccEEEeeCccccccC--Ccc-ccC----------------------------------------
Q 042476 146 ----------GERFPRLLILNLRSNKFNGSL--PVQ-LCH---------------------------------------- 172 (433)
Q Consensus 146 ----------~~~l~~L~~L~L~~n~l~~~~--~~~-l~~---------------------------------------- 172 (433)
...+++|++|++++|.+.+.. +.. ...
T Consensus 182 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 234667777777777766421 000 000
Q ss_pred -----------------------------------------------CCCcCEEEccCCcCcccCCCCc-cccccccccc
Q 042476 173 -----------------------------------------------LTFLRILDVAHNNLSGTIPRCI-NNFTAMATIN 204 (433)
Q Consensus 173 -----------------------------------------------l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~ 204 (433)
.++|+.|++++|.+. .+|..+ ..+++|+.|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEE
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEE
Confidence 123444444444443 344433 4577888888
Q ss_pred cccccccccc-----ccc-CCceeeecceee-eccc--eeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcC
Q 042476 205 SSNQKNAIYY-----FVT-RGNIVFEDASVV-TKGL--LVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSH 275 (433)
Q Consensus 205 l~~~~~~~~~-----~~~-~~~~~~~~~~~~-~~~~--~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~ 275 (433)
++.+...... ... ........+... .... ....+..+++|++|++++|.++ .+|..+..+++|++|++++
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTT
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCC
Confidence 8877533210 000 000111011000 0110 0123556788888888888887 5677778888888888888
Q ss_pred cccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCCC
Q 042476 276 NFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPL 354 (433)
Q Consensus 276 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~ 354 (433)
|+++ .+|..+ .++|+.|++++|++++.+ ..+++|+.|++++|+++ .+|....++.++.+++++|.+.+.+.
T Consensus 420 N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 420 TGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp SCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCT
T ss_pred CCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCH
Confidence 8876 344333 256777777777776532 46778888888888887 56666677778888888887776554
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-33 Score=280.98 Aligned_cols=172 Identities=20% Similarity=0.170 Sum_probs=142.8
Q ss_pred EeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEE
Q 042476 3 NLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVL 82 (433)
Q Consensus 3 ~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (433)
|.++|.++ .+|.. + .++|++|++++|++++..+..+ .++++|++|++++|++++..|+.|.++++|++|
T Consensus 11 ~~~~~~l~-~ip~~----~---~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 11 DGRSRSFT-SIPSG----L---TAAMKSLDLSFNKITYIGHGDL---RACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSCCS-SCCSC----C---CTTCCEEECCSSCCCEECSSTT---SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ECCCCccc-ccccc----C---CCCccEEECcCCccCccChhhh---hcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 55666666 44531 1 3589999999999998888777 569999999999999998888999999999999
Q ss_pred EccCCcCcccCCcccCCCCCcCEEEccCCccccc-CCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc
Q 042476 83 NLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK 161 (433)
Q Consensus 83 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 161 (433)
++++|++.+..|..|+++++|++|++++|.+.+. .|..++++++|++|++++|...+.+|...+..+++|++|++++|.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 9999999977777799999999999999999863 567899999999999999985577776555589999999999999
Q ss_pred ccccCCccccCCCCcCEEEccCCc
Q 042476 162 FNGSLPVQLCHLTFLRILDVAHNN 185 (433)
Q Consensus 162 l~~~~~~~l~~l~~L~~L~l~~n~ 185 (433)
+.+..|..+..+++|++|+++.|.
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSB
T ss_pred ccccChhhhhccccCceEecccCc
Confidence 998788777665544444444443
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-32 Score=272.69 Aligned_cols=159 Identities=24% Similarity=0.221 Sum_probs=135.0
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
++++++|++++|.+++..+..+ .++++|++|++++|.+++..+..|.++++|++|++++|.++...|.+|.++++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTT---TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cccccEEEccCCccCccChhHh---hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 4589999999999998887777 5699999999999999988889999999999999999999987888999999999
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccc-cCChhhhhcCCCccEEEeeCccccccCCccccCCCCc----CEE
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG-SIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL----RIL 179 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L 179 (433)
+|++++|.+.+..+..++.+++|++|++++|.+.+ .+|..+. ++++|++|++++|.+.+..+..+..+++| +.|
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred cccccccccccCCCccccccccccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 99999999997766679999999999999999855 4677776 79999999999998876555555544444 455
Q ss_pred EccCCcCc
Q 042476 180 DVAHNNLS 187 (433)
Q Consensus 180 ~l~~n~~~ 187 (433)
++++|.+.
T Consensus 183 ~l~~n~l~ 190 (570)
T 2z63_A 183 DLSLNPMN 190 (570)
T ss_dssp ECTTCCCC
T ss_pred ccCCCCce
Confidence 55555443
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-31 Score=273.35 Aligned_cols=341 Identities=21% Similarity=0.186 Sum_probs=221.8
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+||||+|.|++..|+.. +. +++|++|+|++|++++..+.+| .++++|++|+|++|++++..+..|.++++|+
T Consensus 56 ~LdLs~N~i~~l~~~~f-~~----l~~L~~L~Ls~N~i~~i~~~~f---~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSF-FS----FPELQVLDLSRCEIQTIEDGAY---QSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp EEECTTSCCCEECTTTT-TT----CTTCCEEECTTCCCCEECTTTT---TTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred EEEeeCCCCCCCCHHHH-hC----CCCCCEEECCCCcCCCcChhHh---cCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 47888888886655322 22 5678888888888887777666 5588888888888888876667788888888
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCccccc-CCccccCCCCCcEEECcCccccccCChhhh-------------
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPTWVG------------- 146 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~------------- 146 (433)
+|++++|++++..+..|+++++|++|++++|.+.+. .|..+..+++|++|++++|.+.+..+..+.
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 888888888866666788888888888888887653 566777888888888888766332211110
Q ss_pred --------------------------------------h-----------------------------------------
Q 042476 147 --------------------------------------E----------------------------------------- 147 (433)
Q Consensus 147 --------------------------------------~----------------------------------------- 147 (433)
.
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 0
Q ss_pred --------------------------------------cCCCccEEEeeCccccccCC-------------------ccc
Q 042476 148 --------------------------------------RFPRLLILNLRSNKFNGSLP-------------------VQL 170 (433)
Q Consensus 148 --------------------------------------~l~~L~~L~L~~n~l~~~~~-------------------~~l 170 (433)
...+++.|++.+|.+....+ ...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 00122333333332221110 011
Q ss_pred cCCCCcCEEEccCCcCcc--cCCCCccccccccccccccccccccccc---------------------------cCCce
Q 042476 171 CHLTFLRILDVAHNNLSG--TIPRCINNFTAMATINSSNQKNAIYYFV---------------------------TRGNI 221 (433)
Q Consensus 171 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~~~---------------------------~~~~~ 221 (433)
..+++|+.++++.|.+.. ..+..+..+.+|+.+++..+........ .....
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 235677888888877642 2333333444555554444321110000 00000
Q ss_pred eeecce-eeeccceeehhhhccceeEEEcccCcc-cccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcC
Q 042476 222 VFEDAS-VVTKGLLVEYNSILNLVRSIDISKNNF-SGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFST 299 (433)
Q Consensus 222 ~~~~~~-~~~~~~~~~~~~~~~~L~~L~L~~n~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 299 (433)
...... ..........+..++.++.|++++|.+ .+..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 000000 001122233445567788889988875 445677888889999999999999888888888999999999999
Q ss_pred CcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC-ccc-CccCcccccCCcC
Q 042476 300 NRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS-TQL-QSFGASCFSGNDL 349 (433)
Q Consensus 300 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~-~~l~~~~~~~n~l 349 (433)
|++++..|..+..+++|+.|++++|++++.+|.. ..+ +.++.+++++|++
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 9998888888888999999999999999877764 233 4678888888865
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.7e-32 Score=260.93 Aligned_cols=309 Identities=17% Similarity=0.130 Sum_probs=173.8
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
++++++|+++++.++...+..+ ..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHH---HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCceEEEecCCchhhCChhHh---cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 3456666666666554333333 2255666666666666555555566666666666666666655555556666666
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN 184 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 184 (433)
+|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+++. .+..+++|+.|++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 6666666665444344455666666666666553 23332223556666666666655532 2334455555555555
Q ss_pred cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476 185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN 264 (433)
Q Consensus 185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 264 (433)
.+.+ +....+|+.|+++.+.................+....-. ....+..+++|++|++++|.+++..|..+..
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred cccc-----cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCc-ccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 4442 111223444443333211000000000000000000000 0123455777888888888888777777888
Q ss_pred CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccc
Q 042476 265 LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCF 344 (433)
Q Consensus 265 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~ 344 (433)
+++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++.. + ...++.++.+++
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l 346 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTL 346 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEEC
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEc
Confidence 8888888888888874 4555667788888888888876 4566667778888888888888754 3 345677777888
Q ss_pred cCCcCC
Q 042476 345 SGNDLC 350 (433)
Q Consensus 345 ~~n~l~ 350 (433)
++|++.
T Consensus 347 ~~N~~~ 352 (390)
T 3o6n_A 347 SHNDWD 352 (390)
T ss_dssp CSSCEE
T ss_pred CCCCcc
Confidence 887663
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.3e-31 Score=252.95 Aligned_cols=298 Identities=20% Similarity=0.265 Sum_probs=219.4
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV 81 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (433)
|++++|.++. +|.+.. +++|++|++++|.+++..+ + ..+++|++|++++|.++.. ..+.++++|++
T Consensus 49 L~l~~~~i~~-~~~~~~------~~~L~~L~l~~n~i~~~~~--~---~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 49 LVVAGEKVAS-IQGIEY------LTNLEYLNLNGNQITDISP--L---SNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp EECCSSCCCC-CTTGGG------CTTCCEEECCSSCCCCCGG--G---TTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred EEEeCCcccc-chhhhh------cCCccEEEccCCccccchh--h---hcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 6777777763 233211 5678888888888775433 4 4578888888888877753 35778888888
Q ss_pred EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc
Q 042476 82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK 161 (433)
Q Consensus 82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 161 (433)
|++++|.+.. .+. +..+++|++|++++|......+ .+..+++|++|++++|.+. .++. +..+++|++|++++|.
T Consensus 115 L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 115 LYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECTTSC
T ss_pred EECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEEccCCc
Confidence 8888888774 333 7778888888888886554433 4778888888888888773 3333 3367888888888888
Q ss_pred ccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhc
Q 042476 162 FNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSIL 241 (433)
Q Consensus 162 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (433)
+... +. +..+++|+.|++++|.+.+..+ +..+++|+.|+++.+... ... ....+
T Consensus 189 l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~---------------------~~~-~~~~l 242 (347)
T 4fmz_A 189 IEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT---------------------DLS-PLANL 242 (347)
T ss_dssp CCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC---------------------CCG-GGTTC
T ss_pred cccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC---------------------CCc-chhcC
Confidence 7743 22 7778888888888888764333 677788888887776411 011 14567
Q ss_pred cceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476 242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL 321 (433)
Q Consensus 242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 321 (433)
++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 8899999999998753 4678889999999999998854 45788899999999999998888888999999999999
Q ss_pred cCCcCcccCCCCcccCccCcccccCCcCC
Q 042476 322 SENDLSGQIPSSTQLQSFGASCFSGNDLC 350 (433)
Q Consensus 322 ~~n~l~~~~p~~~~~~~l~~~~~~~n~l~ 350 (433)
++|++++..| ...++.++.+++++|.+.
T Consensus 319 ~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 319 SQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred cCCccccccC-hhhhhccceeehhhhccc
Confidence 9999997666 677888999999988764
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=273.76 Aligned_cols=315 Identities=21% Similarity=0.209 Sum_probs=234.5
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+|||++|.+++..|+.. +. +++|++|++++|++++..|..+ .++++|++|++++|+++ .+|.. .+++|+
T Consensus 25 ~L~Ls~n~i~~~~~~~~-~~----l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~ 93 (520)
T 2z7x_B 25 ILNISQNYISELWTSDI-LS----LSKLRILIISHNRIQYLDISVF---KFNQELEYLDLSHNKLV-KISCH--PTVNLK 93 (520)
T ss_dssp EEECCSSCCCCCCHHHH-TT----CTTCCEEECCSSCCCEEEGGGG---TTCTTCCEEECCSSCCC-EEECC--CCCCCS
T ss_pred EEECCCCcccccChhhc-cc----cccccEEecCCCccCCcChHHh---hcccCCCEEecCCCcee-ecCcc--ccCCcc
Confidence 48999999987765321 22 5689999999999988878777 55889999999999888 45554 788899
Q ss_pred EEEccCCcCcc-cCCcccCCCCCcCEEEccCCcccccCCccccCCCCC--cEEECcCccc--cccCChhhhh--------
Q 042476 81 VLNLDDNYFTG-NLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSL--ISLDIGENDF--FGSIPTWVGE-------- 147 (433)
Q Consensus 81 ~L~L~~n~i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~~--~~~~~~~~~~-------- 147 (433)
+|++++|.+.+ ..|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 99999998886 467888888888888888887764 234444444 5555555444 2222221110
Q ss_pred --------------------------------------------------------------------------cCCCcc
Q 042476 148 --------------------------------------------------------------------------RFPRLL 153 (433)
Q Consensus 148 --------------------------------------------------------------------------~l~~L~ 153 (433)
..++|+
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 012455
Q ss_pred EEEeeCccccccCCccc-----------------------------------------------------cCCCCcCEEE
Q 042476 154 ILNLRSNKFNGSLPVQL-----------------------------------------------------CHLTFLRILD 180 (433)
Q Consensus 154 ~L~L~~n~l~~~~~~~l-----------------------------------------------------~~l~~L~~L~ 180 (433)
+|++++|.+.+.+|..+ ..+++|++|+
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 55555555544333332 6788999999
Q ss_pred ccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCc
Q 042476 181 VAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPM 260 (433)
Q Consensus 181 l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 260 (433)
+++|.+++..|..+..+++|+.|+++.+.... ....+..+..+++|++|++++|.+++.+|.
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKE------------------LSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB------------------HHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCc------------------cccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 99999998899999999999999999876210 001223456688999999999999975554
Q ss_pred -cccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC-CcccCc
Q 042476 261 -QLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS-STQLQS 338 (433)
Q Consensus 261 -~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~~~ 338 (433)
.+..+++|+.|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+. ...++.
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 488899999999999999888887664 79999999999998 7888777999999999999999954333 456788
Q ss_pred cCcccccCCcCC
Q 042476 339 FGASCFSGNDLC 350 (433)
Q Consensus 339 l~~~~~~~n~l~ 350 (433)
++.+++++|++.
T Consensus 470 L~~L~l~~N~~~ 481 (520)
T 2z7x_B 470 LQKIWLHTNPWD 481 (520)
T ss_dssp CCEEECCSSCBC
T ss_pred ccEEECcCCCCc
Confidence 999999999773
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.2e-32 Score=272.80 Aligned_cols=292 Identities=17% Similarity=0.145 Sum_probs=178.4
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+++++.|++++|.+++..+..+ ..+++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..|..|+++++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALL---DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHH---HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHH---ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 3445555555555544333333 2245555555555555554455555555555555555555544444555555555
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN 184 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 184 (433)
+|++++|.+.+..+..|..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+. .+..+++|+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh-cCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 555555555544444445555555555555555332222222 455555555555555432 1233444444444444
Q ss_pred cCcc------------------cCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeE
Q 042476 185 NLSG------------------TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRS 246 (433)
Q Consensus 185 ~~~~------------------~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 246 (433)
.+.+ .++..+ .++|+.|+++.+.. .. ...+..+++|+.
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l--------------------~~--~~~l~~l~~L~~ 258 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNL--------------------TD--TAWLLNYPGLVE 258 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCC--------------------CC--CGGGGGCTTCSE
T ss_pred ccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCC--------------------CC--ChhhccCCCCCE
Confidence 4432 111111 13444444444331 01 234566888999
Q ss_pred EEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcC
Q 042476 247 IDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDL 326 (433)
Q Consensus 247 L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 326 (433)
|++++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus 259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred EECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence 9999999998888899999999999999999985 5666778899999999999997 6777788889999999999999
Q ss_pred cccCCCCcccCccCcccccCCcCCC
Q 042476 327 SGQIPSSTQLQSFGASCFSGNDLCG 351 (433)
Q Consensus 327 ~~~~p~~~~~~~l~~~~~~~n~l~~ 351 (433)
++.. ...++.+..+++++|++.+
T Consensus 337 ~~~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 337 VTLK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCcC--hhhcCCCCEEEeeCCCCCC
Confidence 8653 3467788889999987643
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=1.7e-31 Score=256.25 Aligned_cols=293 Identities=18% Similarity=0.175 Sum_probs=237.6
Q ss_pred CCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEE
Q 042476 51 NKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISL 130 (433)
Q Consensus 51 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 130 (433)
.+++++.|+++++.++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+.+..|..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 47899999999999987666668899999999999999998777899999999999999999998888889999999999
Q ss_pred ECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccc
Q 042476 131 DIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN 210 (433)
Q Consensus 131 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~ 210 (433)
++++|.+ ..+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.++++.+..
T Consensus 123 ~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCcc-CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 9999999 578888766899999999999999987788899999999999999999843 366788888888887653
Q ss_pred cccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCC
Q 042476 211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR 290 (433)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 290 (433)
....... ......+........ ....+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..++
T Consensus 199 ~~~~~~~--~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 199 STLAIPI--AVEELDASHNSINVV--RGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp SEEECCS--SCSEEECCSSCCCEE--ECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred cccCCCC--cceEEECCCCeeeec--cccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 2111100 000000000000001 112346799999999999854 5678899999999999999988899999999
Q ss_pred CCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCCC
Q 042476 291 SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPL 354 (433)
Q Consensus 291 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~ 354 (433)
+|+.|++++|++++ +|..+..+++|+.|++++|++++..+....++.++.+++++|.+...+.
T Consensus 273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 335 (390)
T 3o6n_A 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 335 (390)
T ss_dssp SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCc
Confidence 99999999999975 5666678899999999999999655555678889999999998876654
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=4.9e-31 Score=258.98 Aligned_cols=322 Identities=21% Similarity=0.265 Sum_probs=202.1
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV 81 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (433)
|++++|.++. +|++.. +++|++|++++|.+++..+ + .++++|++|++++|.+.+..+ +.++++|++
T Consensus 51 L~l~~~~i~~-l~~~~~------l~~L~~L~Ls~n~l~~~~~--~---~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 51 LQADRLGIKS-IDGVEY------LNNLTQINFSNNQLTDITP--L---KNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp EECCSSCCCC-CTTGGG------CTTCCEEECCSSCCCCCGG--G---TTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred EecCCCCCcc-Ccchhh------hcCCCEEECCCCccCCchh--h---hccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 5666666653 333211 4567777777776665433 3 346666666666666664433 666666666
Q ss_pred EEccCCcCcccCCcccCCCCCcCEEEccCCcccccC-------------------CccccCCCCCcEEECcCccccccCC
Q 042476 82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIF-------------------PVSLKNCSSLISLDIGENDFFGSIP 142 (433)
Q Consensus 82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~-------------------~~~~~~l~~L~~L~L~~n~~~~~~~ 142 (433)
|++++|.+.+. +. +.++++|++|++++|.+.+.. ...+..+++|++|++++|.+. .++
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~ 193 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DIS 193 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCG
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CCh
Confidence 66666666643 22 566666666666666654321 012566777888888888773 333
Q ss_pred hhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccccc-CCce
Q 042476 143 TWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVT-RGNI 221 (433)
Q Consensus 143 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~ 221 (433)
.+ ..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ + ..+..+++|+.|+++.+.......+. ....
T Consensus 194 -~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L 267 (466)
T 1o6v_A 194 -VL-AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKL 267 (466)
T ss_dssp -GG-GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred -hh-ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchhhhcCCCC
Confidence 23 367888888888887775433 5667777777777777763 2 34666777777777765422111000 0000
Q ss_pred eeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCc
Q 042476 222 VFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNR 301 (433)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 301 (433)
....+....-.... ....+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|.
T Consensus 268 ~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 268 TELKLGANQISNIS-PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp SEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC
T ss_pred CEEECCCCccCccc-cccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCc
Confidence 00000000000111 14557778888888888875443 6778888888888888876655 6678888888888888
Q ss_pred CCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCCC
Q 042476 302 LFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPL 354 (433)
Q Consensus 302 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~ 354 (433)
+++. ..+..+++|+.|++++|++++..| ...++.++.+++++|.+.+.|.
T Consensus 343 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~ 392 (466)
T 1o6v_A 343 VSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPV 392 (466)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCB
T ss_pred cCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCch
Confidence 8754 457788888888888888887766 6677788888888888877654
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.3e-30 Score=242.71 Aligned_cols=287 Identities=18% Similarity=0.204 Sum_probs=228.7
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
+++.++++++.++. +|..+ .+.++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL-----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC-----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccc-cCccC-----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 78999999998874 55544 4788999999999998777789999999999999999997778899999999999
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccc--cCCccccCCCCcCEEEccCC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNG--SLPVQLCHLTFLRILDVAHN 184 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n 184 (433)
++++|.++. +|..+. ++|++|++++|.+. .++...+..+++|++|++++|.+.. ..+..+.++++|+.|++++|
T Consensus 106 ~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 106 YLSKNQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp ECCSSCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred ECCCCcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 999999884 454443 78999999999984 5666655589999999999998863 56778889999999999999
Q ss_pred cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476 185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN 264 (433)
Q Consensus 185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 264 (433)
.++ .+|..+. ++|+.|+++.+.. ....+..+..+++|+.|++++|.+++..+..+..
T Consensus 182 ~l~-~l~~~~~--~~L~~L~l~~n~l--------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 182 NIT-TIPQGLP--PSLTELHLDGNKI--------------------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp CCC-SCCSSCC--TTCSEEECTTSCC--------------------CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred ccc-cCCcccc--ccCCEEECCCCcC--------------------CccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 987 5665543 7888888877641 1112334556788999999999999888888999
Q ss_pred CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccC------CCCCCeeeCcCCcCccc-CCC--Ccc
Q 042476 265 LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSS------LSFLNHLNLSENDLSGQ-IPS--STQ 335 (433)
Q Consensus 265 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~-~p~--~~~ 335 (433)
+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+..|.. ...++.+++++|++... +++ ...
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 999999999999998 78888999999999999999998777666643 37789999999998742 221 133
Q ss_pred cCccCcccccCC
Q 042476 336 LQSFGASCFSGN 347 (433)
Q Consensus 336 ~~~l~~~~~~~n 347 (433)
+..++.+++++|
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 455667777766
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=1.1e-30 Score=245.19 Aligned_cols=287 Identities=19% Similarity=0.237 Sum_probs=233.5
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476 26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS 105 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 105 (433)
.+++.++++++.++ .+|..+ .++++.|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~-----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI-----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC-----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred ccCCEEECCCCCcc-ccCCCC-----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 36999999999987 456555 578999999999999888889999999999999999999888999999999999
Q ss_pred EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccc--ccCCccccCCCCcCEEEccC
Q 042476 106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN--GSLPVQLCHLTFLRILDVAH 183 (433)
Q Consensus 106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~ 183 (433)
|++++|.+. .+|..+. ++|++|++++|.+. .++...+..+++|++|++++|.+. +..+..+..+ +|+.|++++
T Consensus 107 L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 107 LYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp EECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred EECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 999999998 4555443 89999999999994 666666668999999999999986 3567778888 999999999
Q ss_pred CcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcccc
Q 042476 184 NNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLT 263 (433)
Q Consensus 184 n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 263 (433)
|.++ .+|..+. ++|+.|+++.+.. .......+..+++|+.|++++|.+++..+..+.
T Consensus 182 n~l~-~l~~~~~--~~L~~L~l~~n~i--------------------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 182 AKLT-GIPKDLP--ETLNELHLDHNKI--------------------QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp SBCS-SCCSSSC--SSCSCCBCCSSCC--------------------CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCCC-ccCcccc--CCCCEEECCCCcC--------------------CccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 9998 4666554 6888888887651 112223445678899999999999988888899
Q ss_pred CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccC------CCCCCeeeCcCCcCc--ccCCCC-c
Q 042476 264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSS------LSFLNHLNLSENDLS--GQIPSS-T 334 (433)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~p~~-~ 334 (433)
.+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+.. ...|+.+++++|++. +..|.. .
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 9999999999999998 78888999999999999999998777766654 367899999999987 333322 3
Q ss_pred ccCccCcccccCC
Q 042476 335 QLQSFGASCFSGN 347 (433)
Q Consensus 335 ~~~~l~~~~~~~n 347 (433)
.++.++.+++++|
T Consensus 318 ~l~~L~~l~l~~n 330 (332)
T 2ft3_A 318 CVTDRLAIQFGNY 330 (332)
T ss_dssp TBCCSTTEEC---
T ss_pred ccchhhhhhcccc
Confidence 4566777777776
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.2e-30 Score=241.73 Aligned_cols=268 Identities=16% Similarity=0.244 Sum_probs=207.9
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
.++++.++++++.++ .+|..+. +.+++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus 30 ~c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 30 QCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EEETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred cCCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 457888888888877 4555443 5788899999888876666888888999999999888877788888888999999
Q ss_pred CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcc--cCCCCcccccccccccccccc
Q 042476 132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSG--TIPRCINNFTAMATINSSNQK 209 (433)
Q Consensus 132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~~~ 209 (433)
+++|.+ ..+|..++ ++|++|++++|.+.+..+..+.++++|+.|++++|.+.. ..+..+..+++|+.|+++.+.
T Consensus 107 Ls~n~l-~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQL-KELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCC-SBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcC-CccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 998888 46666553 688899999888887666678888889999998888853 566778888888888887765
Q ss_pred ccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCC
Q 042476 210 NAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM 289 (433)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 289 (433)
... .+. ...++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 183 l~~---------------------l~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 183 ITT---------------------IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp CCS---------------------CCS--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ccc---------------------CCc--cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 210 000 012568889999998887778888888899999999998887777788888
Q ss_pred CCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCc-------ccCccCcccccCCcCC
Q 042476 290 RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSST-------QLQSFGASCFSGNDLC 350 (433)
Q Consensus 290 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-------~~~~l~~~~~~~n~l~ 350 (433)
++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+... ....+..+++++|++.
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 88999999999886 677778888889999999998886544331 2345666778888654
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=4.1e-31 Score=267.24 Aligned_cols=295 Identities=18% Similarity=0.170 Sum_probs=240.1
Q ss_pred CCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEE
Q 042476 51 NKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISL 130 (433)
Q Consensus 51 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 130 (433)
.+.+++.+++++|.+....+..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..|..|+.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 36889999999999997777778899999999999999998888899999999999999999999888889999999999
Q ss_pred ECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccc
Q 042476 131 DIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN 210 (433)
Q Consensus 131 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~ 210 (433)
++++|.+ ..+|..++..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+++|+.++++.+..
T Consensus 129 ~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EeeCCCC-CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 9999999 478887766899999999999999988888999999999999999999853 256677888888777642
Q ss_pred cccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCC
Q 042476 211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR 290 (433)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 290 (433)
...... .......+....-.... ....++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..++.++
T Consensus 205 ~~l~~~--~~L~~L~ls~n~l~~~~--~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 205 STLAIP--IAVEELDASHNSINVVR--GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp SEEECC--TTCSEEECCSSCCCEEE--CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ccccCC--chhheeeccCCcccccc--cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 211100 00000000000000011 1123579999999999986 36788999999999999999999999999999
Q ss_pred CCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCCCCCCCC
Q 042476 291 SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLCGAPLPD 356 (433)
Q Consensus 291 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~~~ 356 (433)
+|+.|++++|.+++ +|..+..+++|+.|++++|.+++.++....++.++.+++++|.+.+.+...
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~ 343 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST 343 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCT
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhh
Confidence 99999999999975 566677899999999999999965545577889999999999888776443
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3.1e-30 Score=263.09 Aligned_cols=332 Identities=20% Similarity=0.176 Sum_probs=243.6
Q ss_pred CCCCC-CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccC
Q 042476 20 PLPYQ-PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIG 98 (433)
Q Consensus 20 ~~p~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~ 98 (433)
.+|.. ++++++|||++|++++..+..| .++++|++|+|++|+|+++.+++|.++++|++|+|++|++++..+.+|.
T Consensus 45 ~vP~~lp~~~~~LdLs~N~i~~l~~~~f---~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNLPFSTKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SCCSSSCTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred ccCCCCCcCCCEEEeeCCCCCCCCHHHH---hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 56655 5689999999999998888788 5699999999999999988889999999999999999999977778899
Q ss_pred CCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccc-cCChhhhhcCCCccEEEeeCccccccCCccccCCC---
Q 042476 99 TLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG-SIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLT--- 174 (433)
Q Consensus 99 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--- 174 (433)
++++|++|++++|.+++..+..|+++++|++|++++|.+.. ..|..+. .+++|++|++++|.+.+..+..+..++
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhh
Confidence 99999999999999998888889999999999999999854 3455544 799999999999987654333222111
Q ss_pred --------------------------------------------------------------------------------
Q 042476 175 -------------------------------------------------------------------------------- 174 (433)
Q Consensus 175 -------------------------------------------------------------------------------- 174 (433)
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ------------------------------------------------CcCEEEccCCcCcccCCC--------------
Q 042476 175 ------------------------------------------------FLRILDVAHNNLSGTIPR-------------- 192 (433)
Q Consensus 175 ------------------------------------------------~L~~L~l~~n~~~~~~p~-------------- 192 (433)
.++.|++.+|.+....+.
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~ 360 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 360 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence 112222222221110000
Q ss_pred -----Cccccccccccccccccccccccc-----cCCceeeec------------------ce-------eeeccceeeh
Q 042476 193 -----CINNFTAMATINSSNQKNAIYYFV-----TRGNIVFED------------------AS-------VVTKGLLVEY 237 (433)
Q Consensus 193 -----~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~------------------~~-------~~~~~~~~~~ 237 (433)
....+++|+.++++.+........ ......... .. ..........
T Consensus 361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccc
Confidence 011233344444444322110000 000000000 00 0001111233
Q ss_pred hhhccceeEEEcccCcccccCCccccCCccCceEeCcCccc-ccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCC
Q 042476 238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFF-VGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFL 316 (433)
Q Consensus 238 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 316 (433)
+..+.+++.++++.|.+.+..+..+..++.|+.|++++|++ .+..|..+..+++|+.|+|++|++++..|..|.++++|
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L 520 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence 45677889999999999888888899999999999999985 44578889999999999999999999999999999999
Q ss_pred CeeeCcCCcCcccCCCC-cccCccCcccccCCcCCCCCCC
Q 042476 317 NHLNLSENDLSGQIPSS-TQLQSFGASCFSGNDLCGAPLP 355 (433)
Q Consensus 317 ~~L~L~~n~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~~~ 355 (433)
+.|+|++|++++..|.. ..++.++.+++++|.+.+.+..
T Consensus 521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 99999999999876653 5678899999999999877544
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.7e-30 Score=243.71 Aligned_cols=267 Identities=17% Similarity=0.227 Sum_probs=222.8
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
.++++.++++++.++ .+|..+ .+++++|++++|.+....|.+|.++++|++|++++|.+++..|..+..+++|++|+
T Consensus 32 ~c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EEETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 457999999999988 566655 36899999999999977788999999999999999999988899999999999999
Q ss_pred CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc--ccCCCCcccccccccccccccc
Q 042476 132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS--GTIPRCINNFTAMATINSSNQK 209 (433)
Q Consensus 132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~l~~~~ 209 (433)
+++|.+ ..+|..++ ++|++|++++|.+....+..+..+++|++|++++|.+. +..+..+..+ +|+.|+++.+.
T Consensus 109 L~~n~l-~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHL-VEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCC-CSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCCcC-CccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 999998 47777654 79999999999999766677999999999999999996 3667777777 88999888765
Q ss_pred ccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCC
Q 042476 210 NAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM 289 (433)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 289 (433)
... .+. ...++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 184 l~~---------------------l~~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 184 LTG---------------------IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp CSS---------------------CCS--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CCc---------------------cCc--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 211 000 112579999999999998888889999999999999999998888889999
Q ss_pred CCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCc-------ccCccCcccccCCcCC
Q 042476 290 RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSST-------QLQSFGASCFSGNDLC 350 (433)
Q Consensus 290 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-------~~~~l~~~~~~~n~l~ 350 (433)
++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+... ....+..+++++|++.
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 99999999999997 778889999999999999999997544331 1345677888888664
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2.7e-30 Score=253.75 Aligned_cols=305 Identities=22% Similarity=0.251 Sum_probs=220.4
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+++++.|+++++.+.. ++. + ..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~~-~---~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDG-V---EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTT-G---GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccccEEecCCCCCcc-Ccc-h---hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 5689999999999875 332 3 458999999999999986544 8999999999999999996544 99999999
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCCh-------------------hhhhcCCCccEEEeeCcccccc
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPT-------------------WVGERFPRLLILNLRSNKFNGS 165 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-------------------~~~~~l~~L~~L~L~~n~l~~~ 165 (433)
+|++++|.+.+..+ +..+++|++|++++|.+.+ ++. ..+..+++|++|++++|.+...
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC
Confidence 99999999986543 8899999999999998743 321 0123678999999999998743
Q ss_pred CCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccccc-CCceeeecceeeeccceeehhhhccce
Q 042476 166 LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVT-RGNIVFEDASVVTKGLLVEYNSILNLV 244 (433)
Q Consensus 166 ~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L 244 (433)
..+..+++|+.|++++|.+.+..| +..+++|+.|+++.+.......+. ........+........ ..+..+++|
T Consensus 193 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~l~~L 267 (466)
T 1o6v_A 193 --SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKL 267 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTC
T ss_pred --hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc-hhhhcCCCC
Confidence 458899999999999999986544 778999999999887532211110 00010001111000111 114556777
Q ss_pred eEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCC
Q 042476 245 RSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN 324 (433)
Q Consensus 245 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 324 (433)
+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|
T Consensus 268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC
Confidence 777777777765433 6677777888888777765433 6677788888888887776554 567778888888888
Q ss_pred cCcccCCCCcccCccCcccccCCcCCCCC
Q 042476 325 DLSGQIPSSTQLQSFGASCFSGNDLCGAP 353 (433)
Q Consensus 325 ~l~~~~p~~~~~~~l~~~~~~~n~l~~~~ 353 (433)
++++. +....++.++.+++++|.+.+.+
T Consensus 342 ~l~~~-~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 342 KVSDV-SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp CCCCC-GGGTTCTTCCEEECCSSCCCBCG
T ss_pred ccCCc-hhhccCCCCCEEeCCCCccCccc
Confidence 87764 55566777777888888776543
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.1e-29 Score=247.89 Aligned_cols=271 Identities=18% Similarity=0.157 Sum_probs=173.8
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+||+++|.+++. |++ +. +++|++|++++|++++. + + ..+++|++|++++|.+++. + +.++++|+
T Consensus 46 ~L~Ls~n~l~~~-~~l--~~----l~~L~~L~Ls~n~l~~~-~--~---~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 46 SLDCHNSSITDM-TGI--EK----LTGLTKLICTSNNITTL-D--L---SQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp EEECCSSCCCCC-TTG--GG----CTTCSEEECCSSCCSCC-C--C---TTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred EEEccCCCcccC-hhh--cc----cCCCCEEEccCCcCCeE-c--c---ccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 478999999864 543 22 56888999998888874 2 3 4588888888888888864 3 77888888
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 160 (433)
+|++++|++++ +| ++.+++|++|++++|.+++. + +..+++|++|++++|...+.++ + ..+++|++|++++|
T Consensus 110 ~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEEECCSS
T ss_pred EEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc--c-ccCCcCCEEECCCC
Confidence 88888888885 44 77888888888888888764 2 6677788888888875445552 2 25777777777777
Q ss_pred cccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhh
Q 042476 161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI 240 (433)
Q Consensus 161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
.+++ +| +..+++|+.|++++|.+++. .+..+++|+.|+++.+..... + ...
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i---------------------p--~~~ 231 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI---------------------D--VTP 231 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---------------------C--CTT
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc---------------------C--ccc
Confidence 7775 33 66677777777777777643 366667777777666542110 0 222
Q ss_pred ccceeEEEcccCcccccCCcc-----------------------------ccCCccCceEeCcCcccccCCCc-------
Q 042476 241 LNLVRSIDISKNNFSGEIPMQ-----------------------------LTNLEGLQTLNLSHNFFVGKIPE------- 284 (433)
Q Consensus 241 ~~~L~~L~L~~n~~~~~~~~~-----------------------------~~~l~~L~~L~Ls~n~l~~~~~~------- 284 (433)
+++|+.|++++|.+++..+.. +..+++|+.|++++|...+.+|.
T Consensus 232 l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITE 311 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred cCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceE
Confidence 334444444444444332222 23445555566655554433332
Q ss_pred -ccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc
Q 042476 285 -NIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG 328 (433)
Q Consensus 285 -~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 328 (433)
.+..+++|+.|++++|++++. + +..+++|+.|++++|++++
T Consensus 312 L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred echhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 134445666666666666552 2 5566666666666666664
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.9e-30 Score=241.21 Aligned_cols=277 Identities=20% Similarity=0.301 Sum_probs=228.9
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+|++++|.+++..+ + +. +++|++|++++|.+++. +.+ ..+++|++|++++|.+.+..+ +..+++|+
T Consensus 70 ~L~l~~n~i~~~~~-~--~~----l~~L~~L~L~~n~i~~~--~~~---~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~ 135 (347)
T 4fmz_A 70 YLNLNGNQITDISP-L--SN----LVKLTNLYIGTNKITDI--SAL---QNLTNLRELYLNEDNISDISP--LANLTKMY 135 (347)
T ss_dssp EEECCSSCCCCCGG-G--TT----CTTCCEEECCSSCCCCC--GGG---TTCTTCSEEECTTSCCCCCGG--GTTCTTCC
T ss_pred EEEccCCccccchh-h--hc----CCcCCEEEccCCcccCc--hHH---cCCCcCCEEECcCCcccCchh--hccCCcee
Confidence 48999999996533 2 22 67899999999999863 234 569999999999999986433 88999999
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 160 (433)
+|++++|..... +..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. ...+++|+.+++++|
T Consensus 136 ~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 136 SLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVN 209 (347)
T ss_dssp EEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSS
T ss_pred EEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccC
Confidence 999999976644 4458999999999999999885543 889999999999999984 4544 347999999999999
Q ss_pred cccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhh
Q 042476 161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI 240 (433)
Q Consensus 161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
.+....+ +..+++|++|++++|.+++ .+. +..+++|+.|+++.+.... ...+..
T Consensus 210 ~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~----------------------~~~~~~ 263 (347)
T 4fmz_A 210 QITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD----------------------INAVKD 263 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC----------------------CGGGTT
T ss_pred CCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC----------------------ChhHhc
Confidence 9985433 8899999999999999984 443 8899999999998875111 123456
Q ss_pred ccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN 320 (433)
Q Consensus 241 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 320 (433)
+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+..++.+++|+.|++++|++++..| +..+++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 78999999999999864 457889999999999999998888999999999999999999987666 78899999999
Q ss_pred CcCCcCc
Q 042476 321 LSENDLS 327 (433)
Q Consensus 321 L~~n~l~ 327 (433)
+++|+++
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 9999986
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.9e-30 Score=245.64 Aligned_cols=282 Identities=19% Similarity=0.196 Sum_probs=214.9
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
++.....+.++++++. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|.+|.++++|+
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGL-----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTC-----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCeEeeCCCCCccc-ccccc-----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 5556677888888774 45444 45788888888888876666788888888888888888877777888888888
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCCh-hhhhcCCCccEEEeeCcc-ccccCCccccCCCCcCEEEcc
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPT-WVGERFPRLLILNLRSNK-FNGSLPVQLCHLTFLRILDVA 182 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~ 182 (433)
+|++++|.+++..+..+..+++|++|++++|.+. .+|. ..+..+++|++|++++|. +....+..+.++++|++|+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 8888888888655555788888888888888874 5665 444478888888888884 665556778888888888888
Q ss_pred CCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccc
Q 042476 183 HNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQL 262 (433)
Q Consensus 183 ~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 262 (433)
+|.+.+..|..+..+++|+.|+++.+.. ..........+++|+.|++++|.+++..+..+
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l--------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQH--------------------ILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCS--------------------TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred CCCcCccCHHHHhccccCCeecCCCCcc--------------------ccchhhhhhhcccccEEECCCCcccccccccc
Confidence 8888877788888888888887776641 11111223457889999999999987654433
Q ss_pred c---CCccCceEeCcCccccc----CCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC
Q 042476 263 T---NLEGLQTLNLSHNFFVG----KIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333 (433)
Q Consensus 263 ~---~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 333 (433)
. ....++.++|+++.+.+ .+|..+..+++|+.|++++|+++...+..+..+++|+.|++++|+++|.+|..
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 2 35678888888888765 36777889999999999999998544444689999999999999999877643
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.4e-29 Score=234.76 Aligned_cols=253 Identities=21% Similarity=0.221 Sum_probs=201.3
Q ss_pred ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCccc--CCcccCCCCCcCE
Q 042476 28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGN--LPISIGTLSSLRS 105 (433)
Q Consensus 28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~p~~~~~l~~L~~ 105 (433)
-+.++.+++.++. +|..+ .+++++|++++|.++...+..|.++++|++|++++|.+... .+..+.++++|++
T Consensus 9 ~~~l~c~~~~l~~-ip~~~-----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGI-----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TTEEECCSSCCSS-CCSCC-----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCEEEcCCCCccc-CCCCC-----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 3567777777764 44444 46888899998888865556678888999999998888733 3566677889999
Q ss_pred EEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCc
Q 042476 106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNN 185 (433)
Q Consensus 106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 185 (433)
|++++|.+. .+|..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 999999887 4566688889999999999888433332344478899999999998887778888888999999999888
Q ss_pred Ccc-cCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476 186 LSG-TIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN 264 (433)
Q Consensus 186 ~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 264 (433)
+.+ ..|..+.. +++|++|++++|.+++..|..+..
T Consensus 162 l~~~~~~~~~~~--------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 162 FQENFLPDIFTE--------------------------------------------LRNLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp EGGGEECSCCTT--------------------------------------------CTTCCEEECTTSCCCEECTTTTTT
T ss_pred cccccchhHHhh--------------------------------------------CcCCCEEECCCCCcCCcCHHHhcC
Confidence 875 34554443 445788888999988877888889
Q ss_pred CccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCC-CCCeeeCcCCcCcccCC
Q 042476 265 LEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLS-FLNHLNLSENDLSGQIP 331 (433)
Q Consensus 265 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p 331 (433)
+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++..+
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 99999999999999877777888899999999999999988888888884 89999999999987654
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=3.4e-29 Score=244.94 Aligned_cols=253 Identities=23% Similarity=0.239 Sum_probs=214.9
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
..+.++.+++.++. +|..+ .+++++|+|++|++++..+..|.++++|++|+|++|.+.+..+..|.++++|++|
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 128 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGI-----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCC-----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcEEEECCCCcCc-cCCCC-----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence 35678888888764 55544 4689999999999998888899999999999999999998888889999999999
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc-ccccCCccccCCCCcCEEEccCCc
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK-FNGSLPVQLCHLTFLRILDVAHNN 185 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 185 (433)
++++|.++...+..|..+++|++|++++|.+ ..++...+..+++|++|++++|+ +....+..+.++++|+.|++++|.
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 9999999977777788999999999999998 46666666689999999999854 443444578889999999999998
Q ss_pred CcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCC
Q 042476 186 LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL 265 (433)
Q Consensus 186 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l 265 (433)
++ .+|. +. .+++|+.|++++|.+++..|..|.++
T Consensus 208 l~-~~~~-~~--------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 208 IK-DMPN-LT--------------------------------------------PLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp CS-SCCC-CT--------------------------------------------TCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred cc-cccc-cc--------------------------------------------ccccccEEECcCCcCcccCcccccCc
Confidence 87 3332 11 24568999999999998889999999
Q ss_pred ccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC
Q 042476 266 EGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS 332 (433)
Q Consensus 266 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 332 (433)
++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.+..
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999999999999988899999999999999999999988888899999999999999999886653
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.8e-29 Score=243.73 Aligned_cols=253 Identities=23% Similarity=0.234 Sum_probs=214.1
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
..+.++.+++.++. +|..+ .++++.|+|++|+++...+..|.++++|++|+|++|.+....+.+|.++++|++|
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~-----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGI-----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCC-----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CCCEEEeCCCCcCc-CCCCC-----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 35678888888763 55555 5788999999999998888889999999999999999987777889999999999
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc-ccccCCccccCCCCcCEEEccCCc
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK-FNGSLPVQLCHLTFLRILDVAHNN 185 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~ 185 (433)
++++|.++...+..|..+++|++|++++|.+ ..++...+..+++|++|++++|+ +....+..+.++++|+.|++++|.
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 9999999877777888999999999999988 46666666688999999999854 443444578889999999999998
Q ss_pred CcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCC
Q 042476 186 LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL 265 (433)
Q Consensus 186 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l 265 (433)
++ .+|. + ..+++|+.|++++|.+++..|..|.++
T Consensus 197 l~-~~~~-~--------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 197 LR-EIPN-L--------------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp CS-SCCC-C--------------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred Cc-cccc-c--------------------------------------------CCCcccCEEECCCCccCccChhhhccC
Confidence 87 4442 1 124568999999999998889999999
Q ss_pred ccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC
Q 042476 266 EGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS 332 (433)
Q Consensus 266 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 332 (433)
++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+..
T Consensus 231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 9999999999999988899999999999999999999988888899999999999999999886653
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=8.6e-30 Score=236.21 Aligned_cols=274 Identities=20% Similarity=0.243 Sum_probs=220.9
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCc--CCcccCCCCCC
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGD--IPDCWMNWPHL 79 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L 79 (433)
++.+++.++ .+|. .+ .+++++|++++|++++..+..+ .++++|++|++++|.++.. .+..+..+++|
T Consensus 12 l~c~~~~l~-~ip~----~~---~~~l~~L~L~~n~l~~i~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 12 IRCNSKGLT-SVPT----GI---PSSATRLELESNKLQSLPHGVF---DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp EECCSSCCS-SCCS----CC---CTTCCEEECCSSCCCCCCTTTT---TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred EEcCCCCcc-cCCC----CC---CCCCCEEECCCCccCccCHhHh---hccccCCEEECCCCccCcccCccccccccccc
Confidence 456666666 3342 11 4589999999999986554445 5599999999999998733 36667789999
Q ss_pred CEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCC-ccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEee
Q 042476 80 QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP-VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLR 158 (433)
Q Consensus 80 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 158 (433)
++|++++|.+. .+|..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. .+++|++|+++
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~ 158 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMA 158 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECT
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECC
Confidence 99999999998 577789999999999999999987655 5789999999999999999655555444 79999999999
Q ss_pred Cccccc-cCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeeh
Q 042476 159 SNKFNG-SLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEY 237 (433)
Q Consensus 159 ~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (433)
+|.+.+ ..|..+..+++|++|++++|.+++..|..+..+
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---------------------------------------- 198 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL---------------------------------------- 198 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC----------------------------------------
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC----------------------------------------
Confidence 999986 578899999999999999999986666655443
Q ss_pred hhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCC-CCCEEeCcCCcCCCCCC--ccccCCC
Q 042476 238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR-SIESLDFSTNRLFGRIP--QSMSSLS 314 (433)
Q Consensus 238 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~--~~l~~l~ 314 (433)
++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|+.|++++|.++...+ .....+.
T Consensus 199 ----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 199 ----SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp ----TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred ----CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence 4478899999999877777889999999999999999999999999885 99999999999976432 1123334
Q ss_pred CCCeeeCcCCcCcccCCC
Q 042476 315 FLNHLNLSENDLSGQIPS 332 (433)
Q Consensus 315 ~L~~L~L~~n~l~~~~p~ 332 (433)
..+.+.+..+.+.|..|.
T Consensus 275 ~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 275 DQRQLLVEVERMECATPS 292 (306)
T ss_dssp HTGGGBSCGGGCBEEESG
T ss_pred hhhhhhccccccccCCch
Confidence 455666677777776664
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.4e-29 Score=235.10 Aligned_cols=227 Identities=21% Similarity=0.286 Sum_probs=183.3
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
.++++.|++++|.++ .+|..+.++++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467788888888877 56777777888888888888887 77777888888888888888887 6677788888888888
Q ss_pred CcCccccccCChhhh--------hcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccc
Q 042476 132 IGENDFFGSIPTWVG--------ERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATI 203 (433)
Q Consensus 132 L~~n~~~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 203 (433)
+++|...+.+|..+. ..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~------- 227 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH------- 227 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-------
Confidence 888777677776653 24788888888888887 67778888888888888888887 34443333
Q ss_pred ccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCC
Q 042476 204 NSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIP 283 (433)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 283 (433)
+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|
T Consensus 228 -------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 228 -------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp -------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred -------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 4457888888888888888888899999999999998888899
Q ss_pred cccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCc
Q 042476 284 ENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327 (433)
Q Consensus 284 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 327 (433)
..++.+++|+.|++++|++.+.+|..+.++++|+.+++..+.+.
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88999999999999999998899999999999999988877655
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.3e-28 Score=238.99 Aligned_cols=235 Identities=23% Similarity=0.246 Sum_probs=207.5
Q ss_pred CCCCC-CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccC
Q 042476 20 PLPYQ-PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIG 98 (433)
Q Consensus 20 ~~p~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~ 98 (433)
.+|.. .+++++|++++|++++..+..| .++++|++|++++|.+++..+..|.++++|++|+|++|.++...+..|.
T Consensus 68 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 68 EVPQGIPSNTRYLNLMENNIQMIQADTF---RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp SCCSCCCTTCSEEECCSSCCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred ccCCCCCCCccEEECcCCcCceECHHHc---CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 34443 5689999999999999888887 5699999999999999998889999999999999999999977777899
Q ss_pred CCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCE
Q 042476 99 TLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRI 178 (433)
Q Consensus 99 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 178 (433)
++++|++|++++|.+....+..|..+++|++|++++|...+.++...+..+++|++|++++|.+.+ +| .+..+++|++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 222 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEE 222 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCE
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccE
Confidence 999999999999999988888899999999999999665578888777789999999999999985 44 5889999999
Q ss_pred EEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccC
Q 042476 179 LDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEI 258 (433)
Q Consensus 179 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 258 (433)
|++++|.+.+..|..+..+ ++|+.|++++|.+++..
T Consensus 223 L~Ls~N~l~~~~~~~~~~l--------------------------------------------~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGL--------------------------------------------SSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp EECTTSCCSEECGGGGTTC--------------------------------------------TTCCEEECTTSCCCEEC
T ss_pred EECcCCcCcccCcccccCc--------------------------------------------cCCCEEEeCCCcCceEC
Confidence 9999999986666655443 45788999999999888
Q ss_pred CccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC
Q 042476 259 PMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF 303 (433)
Q Consensus 259 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 303 (433)
+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 889999999999999999999777788899999999999999874
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=238.29 Aligned_cols=234 Identities=24% Similarity=0.245 Sum_probs=207.1
Q ss_pred CCCC-CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCC
Q 042476 21 LPYQ-PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT 99 (433)
Q Consensus 21 ~p~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~ 99 (433)
+|.. .++++.|++++|++++..+..+ .++++|++|+|++|.++...+..|.++++|++|+|++|.++...+..|.+
T Consensus 58 iP~~~~~~l~~L~L~~n~i~~~~~~~~---~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 58 VPDGISTNTRLLNLHENQIQIIKVNSF---KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp CCSCCCTTCSEEECCSCCCCEECTTTT---SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred CCCCCCCCCcEEEccCCcCCeeCHHHh---hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 4433 5689999999999998887777 56999999999999999888899999999999999999999766778999
Q ss_pred CCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEE
Q 042476 100 LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRIL 179 (433)
Q Consensus 100 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 179 (433)
+++|++|++++|.+....+..|..+++|++|++++|...+.++...+..+++|++|++++|.+. .+| .+..+++|++|
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDEL 212 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEE
Confidence 9999999999999998888889999999999999976657888877778999999999999998 455 58899999999
Q ss_pred EccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCC
Q 042476 180 DVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIP 259 (433)
Q Consensus 180 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 259 (433)
++++|.+++..|..+..+ ++|+.|++++|.+++..+
T Consensus 213 ~Ls~N~l~~~~~~~~~~l--------------------------------------------~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGL--------------------------------------------MHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp ECTTSCCCEECTTTTTTC--------------------------------------------TTCCEEECTTCCCCEECT
T ss_pred ECCCCccCccChhhhccC--------------------------------------------ccCCEEECCCCceeEECh
Confidence 999999987667666554 447888999999998888
Q ss_pred ccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC
Q 042476 260 MQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF 303 (433)
Q Consensus 260 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 303 (433)
..|.++++|+.|+|++|++++..+..+..+++|+.|++++|.+.
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 89999999999999999999877888899999999999999874
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.4e-28 Score=225.71 Aligned_cols=224 Identities=18% Similarity=0.176 Sum_probs=126.8
Q ss_pred cEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEc
Q 042476 29 GLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHL 108 (433)
Q Consensus 29 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 108 (433)
++++.+++.++. +|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus 14 ~~~~c~~~~l~~-ip~~~-----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI-----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSS-CCTTC-----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCccc-CCcCC-----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 456666666653 33333 456677777777766665566666777777777777766655666666777777777
Q ss_pred cCCc-ccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476 109 RNNR-LAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 109 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
++|. +....+..+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+....+..+..+++|++|++++|.++
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 7765 555556666666666666666666643 32222335666666666666665444444556666666666666554
Q ss_pred ccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCcc
Q 042476 188 GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEG 267 (433)
Q Consensus 188 ~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~ 267 (433)
+..+..+.. +++|+.|++++|.+++..|..+..+++
T Consensus 167 ~~~~~~~~~--------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 167 SVPERAFRG--------------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGR 202 (285)
T ss_dssp EECTTTTTT--------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred ccCHHHhcC--------------------------------------------ccccCEEECCCCcccccCHhHccCccc
Confidence 222222222 223444555555555444555555555
Q ss_pred CceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC
Q 042476 268 LQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF 303 (433)
Q Consensus 268 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 303 (433)
|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 555555555555443344555555555555555544
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.3e-28 Score=230.19 Aligned_cols=225 Identities=19% Similarity=0.238 Sum_probs=202.9
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476 26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS 105 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 105 (433)
++++.|++++|.++ .+|..+ ..+++|++|++++|.++ .+|..+.++++|++|++++|.+. .+|..+.++++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l---~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQA---FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCG---GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cceeEEEccCCCch-hcChhh---hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 68999999999998 566666 44899999999999999 88999999999999999999999 78999999999999
Q ss_pred EEccCCcccccCCccccC---------CCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCc
Q 042476 106 LHLRNNRLAGIFPVSLKN---------CSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFL 176 (433)
Q Consensus 106 L~L~~n~l~~~~~~~~~~---------l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 176 (433)
|++++|.+.+.+|..+.. +++|++|++++|.+. .+|..+. .+++|++|++++|.+. .+|..+..+++|
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~-~l~~~l~~l~~L 231 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC-CCCGGGGGCTTC
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC-cCchhhccCCCC
Confidence 999999888888877654 999999999999995 8888876 7999999999999999 467789999999
Q ss_pred CEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccc
Q 042476 177 RILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSG 256 (433)
Q Consensus 177 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 256 (433)
++|++++|.+.+.+|..+..++ +|+.|++++|.+.+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~--------------------------------------------~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRA--------------------------------------------PLKRLILKDCSNLL 267 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCC--------------------------------------------CCCEEECTTCTTCC
T ss_pred CEEECcCCcchhhhHHHhcCCC--------------------------------------------CCCEEECCCCCchh
Confidence 9999999999888887665544 47889999999988
Q ss_pred cCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC
Q 042476 257 EIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF 303 (433)
Q Consensus 257 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 303 (433)
.+|..+..+++|+.|+|++|++.+.+|..++.+++|+.+++..+.+.
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999987664
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=8e-28 Score=234.65 Aligned_cols=253 Identities=18% Similarity=0.179 Sum_probs=195.3
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+++|++|++++|.+++. | .+ ..+++|++|++++|++++. | +..+++|++|++++|.+++. + ++++++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l---~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GI---EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TG---GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred cCCCCEEEccCCCcccC-h-hh---cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 67899999999999975 4 44 5589999999999999974 4 88999999999999999964 4 88999999
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN 184 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 184 (433)
+|++++|.+++. + +..+++|++|++++|.+.+ ++ + ..+++|++|++++|...+.+ .+..+++|+.|++++|
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l-~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--V-SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--C-TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--c-ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 999999999964 4 8899999999999999954 44 3 37999999999999655554 5788999999999999
Q ss_pred cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476 185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN 264 (433)
Q Consensus 185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 264 (433)
.+++ +| +..+++|+.|+++.+.... . .+..+++|+.|++++|.+++ +| +..
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~--------------------~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~ 231 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITK--------------------L---DLNQNIQLTFLDCSSNKLTE-ID--VTP 231 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSC--------------------C---CCTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCe--------------------e---ccccCCCCCEEECcCCcccc-cC--ccc
Confidence 9985 55 7889999999988775211 0 14457889999999999997 55 788
Q ss_pred CccCceEeCcCcccccCCCcccCCCC-------CCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc
Q 042476 265 LEGLQTLNLSHNFFVGKIPENIGNMR-------SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG 328 (433)
Q Consensus 265 l~~L~~L~Ls~n~l~~~~~~~l~~l~-------~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 328 (433)
+++|+.|++++|++++..+..+..+. +|+.|++++|.+.+.+| +..+++|+.|++++|+..+
T Consensus 232 l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred cCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence 99999999999999876554443332 33444444444433333 2334444444444444433
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.6e-29 Score=236.79 Aligned_cols=276 Identities=18% Similarity=0.180 Sum_probs=216.8
Q ss_pred EeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEE
Q 042476 3 NLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVL 82 (433)
Q Consensus 3 ~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 82 (433)
|.++|.++ .+|.. + .++|++|++++|++++..+..+ .++++|++|++++|.+++..+..|.++++|++|
T Consensus 37 ~~~~~~l~-~iP~~----~---~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 37 KGSSGSLN-SIPSG----L---TEAVKSLDLSNNRITYISNSDL---QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECCSTTCS-SCCTT----C---CTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred eCCCCCcc-ccccc----c---cccCcEEECCCCcCcccCHHHh---ccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 55666666 33421 1 4589999999999998766666 569999999999999998888999999999999
Q ss_pred EccCCcCcccCCcccCCCCCcCEEEccCCcccccCC-ccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc
Q 042476 83 NLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP-VSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK 161 (433)
Q Consensus 83 ~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 161 (433)
++++|.+++..+..|.++++|++|++++|.+....+ ..+..+++|++|++++|...+.++...+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999996555569999999999999999996544 4789999999999999953355655555589999999999999
Q ss_pred ccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhc
Q 042476 162 FNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSIL 241 (433)
Q Consensus 162 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (433)
+.+..|..+..+++|++|++++|.+....+..+..+++|+.|+++.+........ ........
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-----------------~l~~~~~~ 248 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS-----------------ELSTGETN 248 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------CC
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc-----------------cccccccc
Confidence 9988899999999999999999998633333345688999999887752211000 00011224
Q ss_pred cceeEEEcccCcccc----cCCccccCCccCceEeCcCcccccCCCcc-cCCCCCCCEEeCcCCcCCCCCC
Q 042476 242 NLVRSIDISKNNFSG----EIPMQLTNLEGLQTLNLSHNFFVGKIPEN-IGNMRSIESLDFSTNRLFGRIP 307 (433)
Q Consensus 242 ~~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 307 (433)
..++.++++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|.+++..|
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 557778888887764 36777889999999999999998 55554 6899999999999999976544
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2.4e-27 Score=231.11 Aligned_cols=137 Identities=25% Similarity=0.363 Sum_probs=68.5
Q ss_pred CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476 53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI 132 (433)
Q Consensus 53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 132 (433)
++|++|++++|++++ +| .|.++++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 355555555555553 34 35555555555555555552 33322 355555555555553 33 3555555555555
Q ss_pred cCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccc
Q 042476 133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQ 208 (433)
Q Consensus 133 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~ 208 (433)
++|.+. .+|.. .++|++|++++|.+. .+| .+..+++|++|++++|.++ .+|.. +++|+.|+++.+
T Consensus 203 ~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N 267 (454)
T 1jl5_A 203 DNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDN 267 (454)
T ss_dssp CSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSS
T ss_pred CCCcCC-cCCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCC
Confidence 555552 23321 235555555555555 344 2555555666666655555 23332 244555555444
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.8e-28 Score=223.67 Aligned_cols=245 Identities=18% Similarity=0.144 Sum_probs=204.6
Q ss_pred cEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCc
Q 042476 56 ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN 135 (433)
Q Consensus 56 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 135 (433)
+.++.+++.++ .+|..+ .++|++|++++|.+....+..|.++++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888887 456544 468999999999999877788999999999999999999888999999999999999999
Q ss_pred cccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccccc
Q 042476 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYF 215 (433)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 215 (433)
.....++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 151 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------- 151 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence 8325664444558999999999999999877888999999999999999998544444443
Q ss_pred ccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEE
Q 042476 216 VTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESL 295 (433)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 295 (433)
+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|
T Consensus 152 -------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 152 -------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp -------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred -------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 4458889999999987777779999999999999999998889999999999999
Q ss_pred eCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC
Q 042476 296 DFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN 347 (433)
Q Consensus 296 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n 347 (433)
++++|.+++..+..+..+++|+.|++++|++.+..+..+.+..++......+
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~ 258 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 258 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEEC
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccC
Confidence 9999999987777899999999999999999987665433333333333333
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2e-26 Score=224.59 Aligned_cols=282 Identities=24% Similarity=0.281 Sum_probs=191.3
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+++|++|++++|.+++ +|.. .++|++|++++|++++ ++.. .++|++|++++|.+++ +| +|+++++|+
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~------~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL------PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLK 156 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC------CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred cCCCCEEEccCCcCCc-cccc------cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence 5688999999998887 4432 5789999999998875 3321 2689999999999985 77 689999999
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN 184 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 184 (433)
+|++++|.+++ +|.. ..+|++|++++|.+. .+| .+ ..+++|++|++++|.+.+ +|... ++|++|++++|
T Consensus 157 ~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~-~~-~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n 225 (454)
T 1jl5_A 157 IIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELP-EL-QNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNN 225 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCC-CC-TTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSS
T ss_pred EEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCc-cc-cCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCC
Confidence 99999999885 5543 358999999999985 466 34 379999999999999885 44332 58999999999
Q ss_pred cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccC
Q 042476 185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN 264 (433)
Q Consensus 185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 264 (433)
.+. .+|. +..+++|+.|+++.+......... .......+.. .........+++|+.|++++|.+++. |..
T Consensus 226 ~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~-~~L~~L~l~~---N~l~~l~~~~~~L~~L~ls~N~l~~l-~~~--- 295 (454)
T 1jl5_A 226 ILE-ELPE-LQNLPFLTTIYADNNLLKTLPDLP-PSLEALNVRD---NYLTDLPELPQSLTFLDVSENIFSGL-SEL--- 295 (454)
T ss_dssp CCS-SCCC-CTTCTTCCEEECCSSCCSSCCSCC-TTCCEEECCS---SCCSCCCCCCTTCCEEECCSSCCSEE-SCC---
T ss_pred cCC-cccc-cCCCCCCCEEECCCCcCCcccccc-cccCEEECCC---CcccccCcccCcCCEEECcCCccCcc-cCc---
Confidence 998 7774 889999999998887532100000 0000000000 00011111235667777777766642 111
Q ss_pred CccCceEeCcCcccccCCCcccCCC-CCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCccc
Q 042476 265 LEGLQTLNLSHNFFVGKIPENIGNM-RSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASC 343 (433)
Q Consensus 265 l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~ 343 (433)
.++|+.|++++|++++ ++ .+ ++|+.|++++|++++ +|.. +++|+.|++++|++++ +|. .++.++.++
T Consensus 296 ~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~--~l~~L~~L~ 363 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE--LPQNLKQLH 363 (454)
T ss_dssp CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEE
T ss_pred CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc--hhhhccEEE
Confidence 1456666666666653 22 22 478888888888765 4543 4678888888888874 555 467778888
Q ss_pred ccCCcCCCC
Q 042476 344 FSGNDLCGA 352 (433)
Q Consensus 344 ~~~n~l~~~ 352 (433)
+++|.+.+.
T Consensus 364 L~~N~l~~l 372 (454)
T 1jl5_A 364 VEYNPLREF 372 (454)
T ss_dssp CCSSCCSSC
T ss_pred CCCCCCCcC
Confidence 888877764
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=9.9e-29 Score=230.09 Aligned_cols=272 Identities=18% Similarity=0.207 Sum_probs=198.8
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
+++.++++.+.+.......+ ..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..+ +..+++|++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLR---QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHH---TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred ceeEeeccccchhhhHHHHh---ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 46677777777765444443 347789999999999988777888899999999999999886544 8889999999
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 186 (433)
++++|.+++.. ..++|++|++++|.+.+ ++.. .+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 86 DLNNNYVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp ECCSSEEEEEE-----ECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred ECcCCcccccc-----CCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 99999887532 34889999999998853 3322 367899999999998877777888889999999999888
Q ss_pred cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc
Q 042476 187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE 266 (433)
Q Consensus 187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~ 266 (433)
.+..+..+. ..+++|++|++++|.+++..+ ...++
T Consensus 157 ~~~~~~~~~-------------------------------------------~~l~~L~~L~L~~N~l~~~~~--~~~l~ 191 (317)
T 3o53_A 157 DTVNFAELA-------------------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFA 191 (317)
T ss_dssp CEEEGGGGG-------------------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCT
T ss_pred CcccHHHHh-------------------------------------------hccCcCCEEECCCCcCccccc--ccccc
Confidence 754433321 124557788888888875522 23478
Q ss_pred cCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc-cCCCC-cccCccCcccc
Q 042476 267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG-QIPSS-TQLQSFGASCF 344 (433)
Q Consensus 267 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~-~~~~~l~~~~~ 344 (433)
+|++|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++ .+|.. ..++.++.+++
T Consensus 192 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred cCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 88888888888874 4445778888888888888887 467778888888888888888883 22221 33455566666
Q ss_pred cCC-cCCCCCCCCCCC
Q 042476 345 SGN-DLCGAPLPDCTE 359 (433)
Q Consensus 345 ~~n-~l~~~~~~~c~~ 359 (433)
.++ .+.|.....|..
T Consensus 270 ~~~~~l~~~~~~~~~~ 285 (317)
T 3o53_A 270 QTVKKLTGQNEEECTV 285 (317)
T ss_dssp HHHHHHHSSSSCCCSS
T ss_pred CCchhccCCchhccCC
Confidence 654 555554445543
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.5e-29 Score=232.58 Aligned_cols=248 Identities=23% Similarity=0.246 Sum_probs=137.8
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCc-CcCCcccC-------CCCCCCEEEccCCcCcccCCccc
Q 042476 26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFS-GDIPDCWM-------NWPHLQVLNLDDNYFTGNLPISI 97 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~p~~~ 97 (433)
++|+.|++++|.+ .+|..++ ..|+.|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFT-----DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHH-----HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CCceeEeeccccc--ccHHHHH-----HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3455666666666 4444442 22556666666553 23443333 45566666666666665555544
Q ss_pred --CCCCCcCEEEccCCcccccCCccccCC-----CCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccccc--CCc
Q 042476 98 --GTLSSLRSLHLRNNRLAGIFPVSLKNC-----SSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGS--LPV 168 (433)
Q Consensus 98 --~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~ 168 (433)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+. .+++|++|++++|.+.+. .+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHH
Confidence 5566666666666666544 4444444 5556666665555322223332 455555555555554432 122
Q ss_pred cc--cCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeE
Q 042476 169 QL--CHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRS 246 (433)
Q Consensus 169 ~l--~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 246 (433)
.+ ..+++|++|++++|.+++ ++. .....+..+++|++
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~-~~~----------------------------------------~~~~~~~~l~~L~~ 232 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMET-PSG----------------------------------------VCSALAAARVQLQG 232 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCC-HHH----------------------------------------HHHHHHHTTCCCSE
T ss_pred HHHhccCCCCCEEECCCCcCcc-hHH----------------------------------------HHHHHHhcCCCCCE
Confidence 22 455555555555555541 000 00011122456777
Q ss_pred EEcccCcccccCC-ccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCc
Q 042476 247 IDISKNNFSGEIP-MQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEND 325 (433)
Q Consensus 247 L~L~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 325 (433)
|++++|.+++..| ..+..+++|+.|+|++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+
T Consensus 233 L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred EECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence 7777777776553 34555677777777777776 5666554 6777777777777654 44 6677777777777777
Q ss_pred Ccc
Q 042476 326 LSG 328 (433)
Q Consensus 326 l~~ 328 (433)
+++
T Consensus 308 l~~ 310 (312)
T 1wwl_A 308 FLD 310 (312)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.6e-28 Score=226.75 Aligned_cols=249 Identities=20% Similarity=0.235 Sum_probs=200.8
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCc-ccCCcccC-------CCCCcCEEEccCCcccccCCccc--
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFT-GNLPISIG-------TLSSLRSLHLRNNRLAGIFPVSL-- 121 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~-- 121 (433)
.++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 56788889999988 567665543 888999999984 45666555 78999999999999998888876
Q ss_pred cCCCCCcEEECcCccccccCChhhhhcC-----CCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccC--CCCc
Q 042476 122 KNCSSLISLDIGENDFFGSIPTWVGERF-----PRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTI--PRCI 194 (433)
Q Consensus 122 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--p~~~ 194 (433)
..+++|++|++++|.+.+. |..+. .+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. +..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8899999999999999655 66555 45 89999999999999877789999999999999999876432 1111
Q ss_pred cccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccc---cCCccccCCccCceE
Q 042476 195 NNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSG---EIPMQLTNLEGLQTL 271 (433)
Q Consensus 195 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L 271 (433)
.+..+++|++|++++|.+++ .....+..+++|+.|
T Consensus 196 ------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 196 ------------------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp ------------------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred ------------------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 01225668999999999973 222344678999999
Q ss_pred eCcCcccccCCC-cccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCCcCC
Q 042476 272 NLSHNFFVGKIP-ENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGNDLC 350 (433)
Q Consensus 272 ~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n~l~ 350 (433)
+|++|++++..| ..+..+++|+.|++++|+++ .+|..+. ++|+.|++++|++++. |....++.++.+++++|.+.
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 999999998775 55677899999999999998 7777665 8999999999999976 66778899999999999887
Q ss_pred CC
Q 042476 351 GA 352 (433)
Q Consensus 351 ~~ 352 (433)
+.
T Consensus 310 ~~ 311 (312)
T 1wwl_A 310 DS 311 (312)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=9e-28 Score=223.62 Aligned_cols=247 Identities=19% Similarity=0.228 Sum_probs=205.1
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ |..+++|++|++++|.+++. + ..++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~ 102 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADL---APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIE 102 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHH---TTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCC
T ss_pred CCCCCEEECcCCccCcCCHHHh---hCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcC
Confidence 5689999999999998877777 559999999999999986654 88999999999999999853 3 348999
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccc-cCCCCcCEEEccC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQL-CHLTFLRILDVAH 183 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~ 183 (433)
+|++++|.+.+..+. .+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+..+..+ ..+++|++|++++
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 999999999876544 46889999999999954 444334479999999999999997766666 4789999999999
Q ss_pred CcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcccc
Q 042476 184 NNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLT 263 (433)
Q Consensus 184 n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 263 (433)
|.+++. +... .+++|++|++++|.+++ +|..+.
T Consensus 179 N~l~~~-~~~~---------------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~ 211 (317)
T 3o53_A 179 NFIYDV-KGQV---------------------------------------------VFAKLKTLDLSSNKLAF-MGPEFQ 211 (317)
T ss_dssp SCCCEE-ECCC---------------------------------------------CCTTCCEEECCSSCCCE-ECGGGG
T ss_pred CcCccc-cccc---------------------------------------------ccccCCEEECCCCcCCc-chhhhc
Confidence 998743 2110 14568999999999985 455588
Q ss_pred CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC-CCCCccccCCCCCCeeeCc-CCcCcccCCCC
Q 042476 264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF-GRIPQSMSSLSFLNHLNLS-ENDLSGQIPSS 333 (433)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~-~n~l~~~~p~~ 333 (433)
.+++|+.|+|++|+++ .+|..+..+++|+.|++++|.++ +.+|..+..+++|+.++++ .+.+++..|..
T Consensus 212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 9999999999999998 57888999999999999999998 6788889999999999999 44566655543
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=5.1e-30 Score=251.56 Aligned_cols=342 Identities=17% Similarity=0.136 Sum_probs=163.5
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccC----CccccCCCCCCCccEEEcCCCcCcCcCCccc-CC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSI----IHLICNGDNKSVIISLKLSKNYFSGDIPDCW-MN 75 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~ 75 (433)
+|||++|++++....-.... +++|++|++++|.+++.. +..+ ..+++|++|++++|.+....+..+ ..
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~----~~~L~~L~L~~~~l~~~~~~~l~~~l---~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPL----LQQCQVVRLDDCGLTEARCKDISSAL---RVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHH----HTTCSEEEEESSCCCHHHHHHHHHHH---HTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ehhhhhcccCchhHHHHHhh----cCCccEEEccCCCCCHHHHHHHHHHH---HhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 36777777764321100011 445666666666665432 2222 335666666666666554322221 12
Q ss_pred CC----CCCEEEccCCcCcc----cCCcccCCCCCcCEEEccCCcccccCCccc-----cCCCCCcEEECcCccccccC-
Q 042476 76 WP----HLQVLNLDDNYFTG----NLPISIGTLSSLRSLHLRNNRLAGIFPVSL-----KNCSSLISLDIGENDFFGSI- 141 (433)
Q Consensus 76 l~----~L~~L~L~~n~i~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~- 141 (433)
++ +|++|++++|.+.. .++..+..+++|++|++++|.+....+..+ ...++|++|++++|.+.+..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 32 46666666666653 335566666666666666666553322221 12345666666666554322
Q ss_pred ---ChhhhhcCCCccEEEeeCccccccCCcccc-----CCCCcCEEEccCCcCccc----CCCCcccccccccccccccc
Q 042476 142 ---PTWVGERFPRLLILNLRSNKFNGSLPVQLC-----HLTFLRILDVAHNNLSGT----IPRCINNFTAMATINSSNQK 209 (433)
Q Consensus 142 ---~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~~~ 209 (433)
+..+. .+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|+.|+++.+.
T Consensus 160 ~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 160 EPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 22222 456666666666665533222221 244566666666665532 34444555666666655543
Q ss_pred cccccc------cc--CCceeeecceee-ec----cceeehhhhccceeEEEcccCcccccCCcccc-----CCccCceE
Q 042476 210 NAIYYF------VT--RGNIVFEDASVV-TK----GLLVEYNSILNLVRSIDISKNNFSGEIPMQLT-----NLEGLQTL 271 (433)
Q Consensus 210 ~~~~~~------~~--~~~~~~~~~~~~-~~----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L 271 (433)
...... .. ........+... .. ......+..+++|++|++++|.++...+..+. ..++|++|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 111000 00 000000000000 00 00122233455666666666665433222221 12466666
Q ss_pred eCcCcccccC----CCcccCCCCCCCEEeCcCCcCCCCCCccccC-----CCCCCeeeCcCCcCcc----cCCCC-cccC
Q 042476 272 NLSHNFFVGK----IPENIGNMRSIESLDFSTNRLFGRIPQSMSS-----LSFLNHLNLSENDLSG----QIPSS-TQLQ 337 (433)
Q Consensus 272 ~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~----~~p~~-~~~~ 337 (433)
++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|.+++ .+|.. ...+
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 6666666543 3344445566666666666665443332221 4566666666666653 23321 3345
Q ss_pred ccCcccccCCcCC
Q 042476 338 SFGASCFSGNDLC 350 (433)
Q Consensus 338 ~l~~~~~~~n~l~ 350 (433)
.++.+++++|.+.
T Consensus 399 ~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 399 SLRELDLSNNCLG 411 (461)
T ss_dssp CCCEEECCSSSCC
T ss_pred CccEEECCCCCCC
Confidence 5666666666554
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=3.2e-25 Score=222.72 Aligned_cols=259 Identities=25% Similarity=0.325 Sum_probs=206.9
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQ 80 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 80 (433)
+||+++|.++ .+|.. + .++|++|++++|.+++ +|. .+++|++|++++|+++. +|. .+++|+
T Consensus 44 ~L~ls~n~L~-~lp~~----l---~~~L~~L~L~~N~l~~-lp~------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~ 104 (622)
T 3g06_A 44 VLNVGESGLT-TLPDC----L---PAHITTLVIPDNNLTS-LPA------LPPELRTLEVSGNQLTS-LPV---LPPGLL 104 (622)
T ss_dssp EEECCSSCCS-CCCSC----C---CTTCSEEEECSCCCSC-CCC------CCTTCCEEEECSCCCSC-CCC---CCTTCC
T ss_pred EEEecCCCcC-ccChh----h---CCCCcEEEecCCCCCC-CCC------cCCCCCEEEcCCCcCCc-CCC---CCCCCC
Confidence 3789999998 65642 1 2589999999999984 443 27899999999999984 555 678999
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCc
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSN 160 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 160 (433)
+|++++|.+++ +|. .+++|++|++++|.++. +|.. +++|++|++++|.+. .+|. .+++|+.|++++|
T Consensus 105 ~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N 171 (622)
T 3g06_A 105 ELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNN 171 (622)
T ss_dssp EEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSS
T ss_pred EEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCC
Confidence 99999999984 554 57899999999999985 4543 589999999999984 4553 3578999999999
Q ss_pred cccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhh
Q 042476 161 KFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSI 240 (433)
Q Consensus 161 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (433)
.++. +| ..+++|+.|++++|.++ .+|.. +++|+.|+++++.... + ...
T Consensus 172 ~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~---------------------l---~~~ 219 (622)
T 3g06_A 172 QLTS-LP---MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS---------------------L---PAL 219 (622)
T ss_dssp CCSC-CC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS---------------------C---CCC
T ss_pred CCCC-Cc---ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCcccc---------------------c---CCC
Confidence 9984 55 45789999999999998 45543 3677777777664110 0 112
Q ss_pred ccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN 320 (433)
Q Consensus 241 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 320 (433)
+++|+.|++++|.+++ +| ..+++|+.|+|++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 4679999999999985 55 45689999999999998 5665 5689999999999998 7788899999999999
Q ss_pred CcCCcCcccCCC
Q 042476 321 LSENDLSGQIPS 332 (433)
Q Consensus 321 L~~n~l~~~~p~ 332 (433)
+++|++++.+|.
T Consensus 291 L~~N~l~~~~~~ 302 (622)
T 3g06_A 291 LEGNPLSERTLQ 302 (622)
T ss_dssp CCSCCCCHHHHH
T ss_pred ecCCCCCCcCHH
Confidence 999999986664
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5e-27 Score=231.00 Aligned_cols=218 Identities=20% Similarity=0.185 Sum_probs=162.0
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
+++|+.|+|++|.+++..|..|.++++|++|+|++|.+++..| |..+++|++|++++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 5578888888888887777788888888888888888876554 778888888888888877533 237888888
Q ss_pred CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476 132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA 211 (433)
Q Consensus 132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~ 211 (433)
+++|.+.+.. .. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+.
T Consensus 106 L~~N~l~~~~-~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---------------- 165 (487)
T 3oja_A 106 AANNNISRVS-CS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA---------------- 165 (487)
T ss_dssp CCSSCCCCEE-EC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG----------------
T ss_pred CcCCcCCCCC-cc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh----------------
Confidence 8888874332 22 367888888888888877777888888888888888888765554332
Q ss_pred ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCC
Q 042476 212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRS 291 (433)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 291 (433)
..+++|+.|++++|.+++..+ ...+++|+.|+|++|.+++. |..+..+++
T Consensus 166 ---------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~ 215 (487)
T 3oja_A 166 ---------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAG 215 (487)
T ss_dssp ---------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTT
T ss_pred ---------------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCC
Confidence 113457777777777775532 33578888888888888754 444777888
Q ss_pred CCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCc
Q 042476 292 IESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327 (433)
Q Consensus 292 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 327 (433)
|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 216 L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 216 VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 8888888888874 6666777888888888888887
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.8e-25 Score=203.91 Aligned_cols=211 Identities=24% Similarity=0.203 Sum_probs=124.1
Q ss_pred CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476 53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI 132 (433)
Q Consensus 53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 132 (433)
+++++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666665555555556666666666666665444455556666666666666655555555555555555555
Q ss_pred cCccccccCChhhhhcCCCccEEEeeCcccccc-CCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476 133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGS-LPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA 211 (433)
Q Consensus 133 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~ 211 (433)
++|.+. .++...+..+++|++|++++|.+... +|..+..+++|++|++++|
T Consensus 108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N--------------------------- 159 (276)
T 2z62_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--------------------------- 159 (276)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS---------------------------
T ss_pred CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC---------------------------
Confidence 555552 22221122445555555555544431 3444444444444444444
Q ss_pred ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCc----eEeCcCcccccCCCcccC
Q 042476 212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQ----TLNLSHNFFVGKIPENIG 287 (433)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~l~ 287 (433)
.+++..+..+..+++|+ +|++++|++++..+..+.
T Consensus 160 -----------------------------------------~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~ 198 (276)
T 2z62_A 160 -----------------------------------------KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (276)
T ss_dssp -----------------------------------------CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC
T ss_pred -----------------------------------------CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC
Confidence 44433333444444444 677888887755444443
Q ss_pred CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC
Q 042476 288 NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333 (433)
Q Consensus 288 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 333 (433)
..+|+.|++++|++++..+..+..+++|+.|++++|+++|.+|..
T Consensus 199 -~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 199 -EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp -SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred -CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 447888888888887666667788888888899988888877755
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.3e-27 Score=230.31 Aligned_cols=236 Identities=19% Similarity=0.207 Sum_probs=198.4
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL---APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG---TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred CCCccEEEeeCCcCCCCCHHHH---hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence 5689999999999999888777 569999999999999987665 8899999999999999985332 38999
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCcccc-CCCCcCEEEccC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLC-HLTFLRILDVAH 183 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~ 183 (433)
+|++++|.+.+..+. .+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++..|..+. .+++|+.|++++
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 999999999976554 468899999999999665555555 799999999999999987787776 799999999999
Q ss_pred CcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCcccc
Q 042476 184 NNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLT 263 (433)
Q Consensus 184 n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 263 (433)
|.+++. |.. . .++.|+.|++++|.+++. |..+.
T Consensus 179 N~l~~~-~~~-~--------------------------------------------~l~~L~~L~Ls~N~l~~~-~~~~~ 211 (487)
T 3oja_A 179 NFIYDV-KGQ-V--------------------------------------------VFAKLKTLDLSSNKLAFM-GPEFQ 211 (487)
T ss_dssp SCCCEE-ECC-C--------------------------------------------CCTTCCEEECCSSCCCEE-CGGGG
T ss_pred Cccccc-ccc-c--------------------------------------------cCCCCCEEECCCCCCCCC-CHhHc
Confidence 998743 211 0 145689999999999864 44588
Q ss_pred CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCC-CCCCccccCCCCCCeeeCc
Q 042476 264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLF-GRIPQSMSSLSFLNHLNLS 322 (433)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~ 322 (433)
.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 212 ~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 212 SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99999999999999984 7888899999999999999997 5677788888888887776
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=4.5e-29 Score=244.83 Aligned_cols=323 Identities=17% Similarity=0.131 Sum_probs=209.8
Q ss_pred CEEeecccCccc----CCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-C-CCCCccEEEcCCCcCcC----cCC
Q 042476 1 ELNLSNNQIYGV----IPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-D-NKSVIISLKLSKNYFSG----DIP 70 (433)
Q Consensus 1 ~L~ls~n~l~~~----~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~-~~~~L~~L~L~~n~l~~----~~~ 70 (433)
+|+|++|.+++. +++.. .. +++|++|++++|.+++..+..++.. . ..++|++|++++|.+.. .++
T Consensus 32 ~L~L~~~~l~~~~~~~l~~~l-~~----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 32 VVRLDDCGLTEARCKDISSAL-RV----NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp EEEEESSCCCHHHHHHHHHHH-HT----CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred EEEccCCCCCHHHHHHHHHHH-Hh----CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 478899988853 22211 11 4679999999998877555444322 1 12268899999988874 457
Q ss_pred cccCCCCCCCEEEccCCcCcccCCccc-----CCCCCcCEEEccCCccccc----CCccccCCCCCcEEECcCccccccC
Q 042476 71 DCWMNWPHLQVLNLDDNYFTGNLPISI-----GTLSSLRSLHLRNNRLAGI----FPVSLKNCSSLISLDIGENDFFGSI 141 (433)
Q Consensus 71 ~~~~~l~~L~~L~L~~n~i~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~ 141 (433)
..+..+++|++|++++|.+....+..+ ...++|++|++++|.++.. ++..+..+++|++|++++|.+.+..
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 778888899999999888875433332 2356788888888887753 3455666788888888888774433
Q ss_pred Chhhh----hcCCCccEEEeeCcccccc----CCccccCCCCcCEEEccCCcCcccC-----CCCccccccccccccccc
Q 042476 142 PTWVG----ERFPRLLILNLRSNKFNGS----LPVQLCHLTFLRILDVAHNNLSGTI-----PRCINNFTAMATINSSNQ 208 (433)
Q Consensus 142 ~~~~~----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-----p~~~~~l~~L~~L~l~~~ 208 (433)
+..+. ...++|++|++++|.++.. ++..+..+++|++|++++|.+.+.. +..+..+++|+.|+++.|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 33332 2355788888887777642 3555666777777777777765321 112234566777766665
Q ss_pred ccccc------cccc-CCceeeecceee-eccc----eeeh-hhhccceeEEEcccCccccc----CCccccCCccCceE
Q 042476 209 KNAIY------YFVT-RGNIVFEDASVV-TKGL----LVEY-NSILNLVRSIDISKNNFSGE----IPMQLTNLEGLQTL 271 (433)
Q Consensus 209 ~~~~~------~~~~-~~~~~~~~~~~~-~~~~----~~~~-~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L 271 (433)
..... ..+. .......++... .... .... ....++|++|++++|.+++. ++..+..+++|++|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 42211 0000 000000000000 0000 0000 11235899999999999865 45666778999999
Q ss_pred eCcCcccccCCCcccCC-----CCCCCEEeCcCCcCCC----CCCccccCCCCCCeeeCcCCcCcc
Q 042476 272 NLSHNFFVGKIPENIGN-----MRSIESLDFSTNRLFG----RIPQSMSSLSFLNHLNLSENDLSG 328 (433)
Q Consensus 272 ~Ls~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~ 328 (433)
++++|++++..+..+.. .++|+.|++++|.+++ .+|..+..+++|+.|++++|++++
T Consensus 347 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred EccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 99999998665554432 6799999999999986 678888889999999999999875
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8.2e-25 Score=199.54 Aligned_cols=164 Identities=24% Similarity=0.232 Sum_probs=137.1
Q ss_pred CCCCC-CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccC
Q 042476 20 PLPYQ-PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIG 98 (433)
Q Consensus 20 ~~p~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~ 98 (433)
.+|.. .+++++|++++|.+++..+..+ .++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.
T Consensus 21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSF---FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp SCCSSSCTTCCEEECTTCCCCEECTTTT---TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCCCCCccEEECCCCcccccCHhHh---ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 34543 4579999999999998777666 5599999999999999988888999999999999999999988888999
Q ss_pred CCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccc-cCChhhhhcCCCccEEEeeCccccccCCccccCCCCcC
Q 042476 99 TLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFG-SIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLR 177 (433)
Q Consensus 99 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 177 (433)
++++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+. .+++|++|++++|.+.+..+..+..+++|+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 99999999999999998777789999999999999999854 3577766 799999999999999866555555544444
Q ss_pred ----EEEccCCcCc
Q 042476 178 ----ILDVAHNNLS 187 (433)
Q Consensus 178 ----~L~l~~n~~~ 187 (433)
.|++++|.+.
T Consensus 177 ~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 177 LLNLSLDLSLNPMN 190 (276)
T ss_dssp TCCEEEECCSSCCC
T ss_pred ccceeeecCCCccc
Confidence 4555555544
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.8e-24 Score=196.53 Aligned_cols=207 Identities=21% Similarity=0.224 Sum_probs=127.4
Q ss_pred CccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECc
Q 042476 54 VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIG 133 (433)
Q Consensus 54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 133 (433)
..+.++++++.++ .+|..+. +++++|++++|.+....+.+|.++++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3456666666665 2444332 356666666666664444456666666666666666554444444555555555555
Q ss_pred CccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccc
Q 042476 134 ENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIY 213 (433)
Q Consensus 134 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 213 (433)
+|.+ ..++...+..+++|++|++++|.+....+..+..+++
T Consensus 94 ~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-------------------------------------- 134 (270)
T 2o6q_A 94 DNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-------------------------------------- 134 (270)
T ss_dssp SSCC-CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT--------------------------------------
T ss_pred CCcC-CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC--------------------------------------
Confidence 5555 2333333334444444444444444333333333333
Q ss_pred ccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCC
Q 042476 214 YFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE 293 (433)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 293 (433)
|++|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+
T Consensus 135 ------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 135 ------------------------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp ------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ------------------------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 45555555555544445567778888888888888866666788888888
Q ss_pred EEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCC
Q 042476 294 SLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPS 332 (433)
Q Consensus 294 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 332 (433)
.|++++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred EEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 888888888876666788888899999999988877654
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6e-24 Score=213.53 Aligned_cols=259 Identities=24% Similarity=0.294 Sum_probs=208.0
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
+++.|++++|.++ .+|..+ .++|+.|++++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l-----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L 106 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCL-----PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLEL 106 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCC-----CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred CCcEEEecCCCcC-ccChhh-----CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEE
Confidence 5899999999998 566655 479999999999998 4555 5789999999999998 5665 67999999
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 186 (433)
++++|.+++. |. .+++|+.|++++|.+. .+|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+
T Consensus 107 ~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l 173 (622)
T 3g06_A 107 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQL 173 (622)
T ss_dssp EECSCCCCCC-CC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred ECcCCcCCCC-CC---CCCCcCEEECCCCCCC-cCCCC----CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCC
Confidence 9999999854 44 5789999999999984 56653 5899999999999984 443 356899999999999
Q ss_pred cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc
Q 042476 187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE 266 (433)
Q Consensus 187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~ 266 (433)
+ .+| ..+++|+.|+++.|.... ....+++|+.|++++|.++ .+|. .++
T Consensus 174 ~-~l~---~~~~~L~~L~Ls~N~l~~------------------------l~~~~~~L~~L~L~~N~l~-~l~~---~~~ 221 (622)
T 3g06_A 174 T-SLP---MLPSGLQELSVSDNQLAS------------------------LPTLPSELYKLWAYNNRLT-SLPA---LPS 221 (622)
T ss_dssp S-CCC---CCCTTCCEEECCSSCCSC------------------------CCCCCTTCCEEECCSSCCS-SCCC---CCT
T ss_pred C-CCc---ccCCCCcEEECCCCCCCC------------------------CCCccchhhEEECcCCccc-ccCC---CCC
Confidence 8 466 456788889888775110 0112467999999999998 4453 348
Q ss_pred cCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccC
Q 042476 267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSG 346 (433)
Q Consensus 267 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~ 346 (433)
+|+.|+|++|++++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++..++....++.++.+++++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence 89999999999985 55 45689999999999997 4555 56899999999999995433446778899999999
Q ss_pred CcCCCC
Q 042476 347 NDLCGA 352 (433)
Q Consensus 347 n~l~~~ 352 (433)
|.+.+.
T Consensus 294 N~l~~~ 299 (622)
T 3g06_A 294 NPLSER 299 (622)
T ss_dssp CCCCHH
T ss_pred CCCCCc
Confidence 988753
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.4e-23 Score=190.72 Aligned_cols=154 Identities=23% Similarity=0.243 Sum_probs=133.2
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
+.++++++++.++. +|..+ .+++++|++++|+++...+..|.++++|++|++++|.++...+..|.++++|++|
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI-----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC-----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCCEEEccCCCCCc-cCCCC-----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 57899999999985 56555 4689999999999998888899999999999999999996666678999999999
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 186 (433)
++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 99999999888788899999999999999994 55555555899999999999999866666678888888888887776
Q ss_pred c
Q 042476 187 S 187 (433)
Q Consensus 187 ~ 187 (433)
+
T Consensus 170 ~ 170 (270)
T 2o6q_A 170 K 170 (270)
T ss_dssp S
T ss_pred c
Confidence 6
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=8.3e-24 Score=193.93 Aligned_cols=204 Identities=19% Similarity=0.245 Sum_probs=115.4
Q ss_pred CCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEE
Q 042476 51 NKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISL 130 (433)
Q Consensus 51 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 130 (433)
+++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 3556666666666665 2333332 4566666666666655555566666666666666665533221 344555555
Q ss_pred ECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccc
Q 042476 131 DIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKN 210 (433)
Q Consensus 131 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~ 210 (433)
++++|.+ . .+|..+..+++|+.|++++|++++..+..|..+
T Consensus 83 ~Ls~N~l-------------------------~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l------------- 123 (290)
T 1p9a_G 83 DLSHNQL-------------------------Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL------------- 123 (290)
T ss_dssp ECCSSCC-------------------------S-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC-------------
T ss_pred ECCCCcC-------------------------C-cCchhhccCCCCCEEECCCCcCcccCHHHHcCC-------------
Confidence 5555544 4 334444455555555555555543222323222
Q ss_pred cccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCC
Q 042476 211 AIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMR 290 (433)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 290 (433)
++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..+..++
T Consensus 124 -------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 124 -------------------------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp -------------------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred -------------------------------CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 2245555555555544455556667777777777777655555566677
Q ss_pred CCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccC
Q 042476 291 SIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQI 330 (433)
Q Consensus 291 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 330 (433)
+|+.|++++|+++ .+|..+....+|+.+++++|++.+..
T Consensus 173 ~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 7777777777775 55555666667777777777776543
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.3e-24 Score=197.59 Aligned_cols=203 Identities=22% Similarity=0.219 Sum_probs=128.5
Q ss_pred CCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccE
Q 042476 75 NWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLI 154 (433)
Q Consensus 75 ~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 154 (433)
.+++|+.|++++|.+.. . ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+. .++...+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCE
Confidence 44555555555555442 1 2344555555555555555432 24555555555555555553 333333335566666
Q ss_pred EEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccce
Q 042476 155 LNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLL 234 (433)
Q Consensus 155 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (433)
|++++|.+.+..+..+..+++|++|++++|.+++..+..+..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------------------------- 155 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-------------------------------------- 155 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------------------
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------------------------------------
Confidence 666666665444555666666666666666665333332322
Q ss_pred eehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCC
Q 042476 235 VEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLS 314 (433)
Q Consensus 235 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 314 (433)
+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+ .++
T Consensus 156 ------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~ 222 (272)
T 3rfs_A 156 ------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCP 222 (272)
T ss_dssp ------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTT
T ss_pred ------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCc
Confidence 3336666677777766666667788889999999999887777778888999999999998764 355
Q ss_pred CCCeeeCcCCcCcccCCCC
Q 042476 315 FLNHLNLSENDLSGQIPSS 333 (433)
Q Consensus 315 ~L~~L~L~~n~l~~~~p~~ 333 (433)
+|+.++++.|.++|.+|..
T Consensus 223 ~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHHHhCCCcccCc
Confidence 7888999999999988864
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.8e-23 Score=190.12 Aligned_cols=228 Identities=20% Similarity=0.211 Sum_probs=172.2
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
.+..+++..+.+.+.... ..+++|+.|++++|.+... ..+..+++|++|++++|.+.+ + ..+.++++|++|
T Consensus 20 ~l~~l~l~~~~~~~~~~~-----~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 90 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQ-----NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHTCSCTTSEECH-----HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEE
T ss_pred HHHHHHhcCccccccccc-----ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEE
Confidence 345556666666544332 2377888888888887632 347778888888888888874 3 477888888888
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 186 (433)
++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 88888888777777888888888888888884 55555444788888888888888866666778888899999998888
Q ss_pred cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc
Q 042476 187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE 266 (433)
Q Consensus 187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~ 266 (433)
++..+..+.. +++|+.|++++|.+++..+..+..++
T Consensus 170 ~~~~~~~~~~--------------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 170 QSLPEGVFDK--------------------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp CCCCTTTTTT--------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred CccCHHHhcC--------------------------------------------CccCCEEECCCCcCCccCHHHHhCCc
Confidence 7544443433 34477888888888877777788889
Q ss_pred cCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCC
Q 042476 267 GLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSF 315 (433)
Q Consensus 267 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 315 (433)
+|+.|++++|.+. +.+++|+.|+++.|.+++.+|..++.++.
T Consensus 206 ~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 206 SLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 9999999999876 34567888999999999888887766543
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=9e-25 Score=202.68 Aligned_cols=230 Identities=22% Similarity=0.233 Sum_probs=169.0
Q ss_pred CCCccEEEcCCCcCcCcC-Cc--ccCCCCCCCEEEccCCcCcccCCccc--CCCCCcCEEEccCCcccccCC----cccc
Q 042476 52 KSVIISLKLSKNYFSGDI-PD--CWMNWPHLQVLNLDDNYFTGNLPISI--GTLSSLRSLHLRNNRLAGIFP----VSLK 122 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~-~~--~~~~l~~L~~L~L~~n~i~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~ 122 (433)
...++.+.+.++.+.... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 345677888777665211 10 11234668999999999888888877 888899999999998886544 3345
Q ss_pred CCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccccc--C--CccccCCCCcCEEEccCCcCcccCCCCccccc
Q 042476 123 NCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGS--L--PVQLCHLTFLRILDVAHNNLSGTIPRCINNFT 198 (433)
Q Consensus 123 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 198 (433)
.+++|++|++++|.+. .++...+..+++|++|++++|++.+. + +..+..+++|++|++++|.++ .++...
T Consensus 143 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~---- 216 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVC---- 216 (310)
T ss_dssp BCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHH----
T ss_pred hccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHH----
Confidence 7889999999999884 44444444788999999999987642 2 233467889999999999886 222110
Q ss_pred cccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCC---ccCceEeCcC
Q 042476 199 AMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNL---EGLQTLNLSH 275 (433)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~Ls~ 275 (433)
....+.+++|++|++++|.+++..|..+..+ ++|++|+|++
T Consensus 217 ------------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 217 ------------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp ------------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred ------------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 0012335668889999999987777777666 6999999999
Q ss_pred cccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcc
Q 042476 276 NFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSG 328 (433)
Q Consensus 276 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 328 (433)
|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9998 6777664 8999999999999854 33 6788999999999999874
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=4.8e-23 Score=188.84 Aligned_cols=153 Identities=25% Similarity=0.245 Sum_probs=119.5
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
++++++++++++.++. +|..+ .++++.|++++|.+++..+..|.++++|++|++++|.++...+ . ..+++|+
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~-----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~ 80 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDL-----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLG 80 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCC-----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCC
T ss_pred cCCccEEECCCCCCCc-CCCCC-----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCC
Confidence 5689999999999985 55544 4789999999999998888999999999999999999995433 3 7899999
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN 184 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 184 (433)
+|++++|.+. .+|..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 9999999998 56777788888888888888874 455444446677777777777766555555566666666666666
Q ss_pred cCc
Q 042476 185 NLS 187 (433)
Q Consensus 185 ~~~ 187 (433)
+++
T Consensus 159 ~l~ 161 (290)
T 1p9a_G 159 NLT 161 (290)
T ss_dssp CCS
T ss_pred cCC
Confidence 555
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=8.2e-26 Score=216.37 Aligned_cols=242 Identities=15% Similarity=0.233 Sum_probs=166.4
Q ss_pred CCCCccEEEcCCCcCcCc----CCcccCCCCCCCEEEccCCc---CcccCCccc-------CCCCCcCEEEccCCcccc-
Q 042476 51 NKSVIISLKLSKNYFSGD----IPDCWMNWPHLQVLNLDDNY---FTGNLPISI-------GTLSSLRSLHLRNNRLAG- 115 (433)
Q Consensus 51 ~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~---i~~~~p~~~-------~~l~~L~~L~L~~n~l~~- 115 (433)
.+++|++|++++|.+... ++..+..+++|++|+|++|. +.+.+|..+ ..+++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 367777888887777654 33446677788888887753 333444433 677888888888888775
Q ss_pred ---cCCccccCCCCCcEEECcCccccccCChhhhh---cC---------CCccEEEeeCcccc-ccCC---ccccCCCCc
Q 042476 116 ---IFPVSLKNCSSLISLDIGENDFFGSIPTWVGE---RF---------PRLLILNLRSNKFN-GSLP---VQLCHLTFL 176 (433)
Q Consensus 116 ---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~l~~l~~L 176 (433)
.++..+..+++|++|++++|.+....+..+.. .+ ++|++|++++|.+. ..++ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 35666777888888888888774333322221 22 78888888888876 2333 356677788
Q ss_pred CEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccc-
Q 042476 177 RILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS- 255 (433)
Q Consensus 177 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~- 255 (433)
++|++++|.+...-.. ......+..+++|+.|+|++|.++
T Consensus 190 ~~L~L~~n~l~~~g~~---------------------------------------~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIE---------------------------------------HLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp CEEECCSSCCCHHHHH---------------------------------------HHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred CEEECcCCCCCHhHHH---------------------------------------HHHHHHhhcCCCccEEECcCCCCCc
Confidence 8888888877521000 000001223556888888888885
Q ss_pred ---ccCCccccCCccCceEeCcCcccccC----CCccc--CCCCCCCEEeCcCCcCCC----CCCccc-cCCCCCCeeeC
Q 042476 256 ---GEIPMQLTNLEGLQTLNLSHNFFVGK----IPENI--GNMRSIESLDFSTNRLFG----RIPQSM-SSLSFLNHLNL 321 (433)
Q Consensus 256 ---~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~L 321 (433)
+.+|..+..+++|+.|+|++|++++. ++..+ +.+++|+.|++++|.+++ .+|..+ .++++|+.|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 45677788889999999999998765 45555 348899999999999987 477766 66899999999
Q ss_pred cCCcCcccCC
Q 042476 322 SENDLSGQIP 331 (433)
Q Consensus 322 ~~n~l~~~~p 331 (433)
++|++++..+
T Consensus 311 ~~N~l~~~~~ 320 (386)
T 2ca6_A 311 NGNRFSEEDD 320 (386)
T ss_dssp TTSBSCTTSH
T ss_pred cCCcCCcchh
Confidence 9999987554
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=6.4e-25 Score=208.20 Aligned_cols=180 Identities=22% Similarity=0.223 Sum_probs=98.4
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCC-CCCC-CccEEEcCCCcCcCcCCcccCCC---
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNG-DNKS-VIISLKLSKNYFSGDIPDCWMNW--- 76 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~-~L~~L~L~~n~l~~~~~~~~~~l--- 76 (433)
++++.|.+++.+|++... +++|++|++++|.+++..+..++.. ..++ +|++|++++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~-----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSI-----PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EECCCCTTCCHHHHHHTS-----CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred cccccccchHHHHHHHhC-----CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 466777777666644221 3347777777777766555222111 3355 67777777777665555555443
Q ss_pred --CCCCEEEccCCcCcccCCcc----cCCC-CCcCEEEccCCcccccCCccc----cC-CCCCcEEECcCccccccC---
Q 042476 77 --PHLQVLNLDDNYFTGNLPIS----IGTL-SSLRSLHLRNNRLAGIFPVSL----KN-CSSLISLDIGENDFFGSI--- 141 (433)
Q Consensus 77 --~~L~~L~L~~n~i~~~~p~~----~~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~~~~~~--- 141 (433)
++|++|+|++|.++...+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+..
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 66777777777766544443 3333 567777777776665444332 22 246666666666664322
Q ss_pred -ChhhhhcCC-CccEEEeeCccccccCCc----cccCC-CCcCEEEccCCcCc
Q 042476 142 -PTWVGERFP-RLLILNLRSNKFNGSLPV----QLCHL-TFLRILDVAHNNLS 187 (433)
Q Consensus 142 -~~~~~~~l~-~L~~L~L~~n~l~~~~~~----~l~~l-~~L~~L~l~~n~~~ 187 (433)
+..+. .++ +|++|++++|.++...+. .+..+ ++|++|++++|.+.
T Consensus 158 l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 158 LIQILA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 22222 233 666666666666543332 22333 36666666666654
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.4e-24 Score=203.75 Aligned_cols=251 Identities=18% Similarity=0.259 Sum_probs=165.1
Q ss_pred CccEEEccCCcccccCCccccCCCCC--CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCccc-CCcccCCCCCc
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNK--SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGN-LPISIGTLSSL 103 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~p~~~~~l~~L 103 (433)
.++.++++++.+.+. .+ ..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|
T Consensus 48 ~~~~l~l~~~~~~~~---~~---~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 48 LWQTLDLTGKNLHPD---VT---GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TSSEEECTTCBCCHH---HH---HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hheeeccccccCCHH---HH---HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 477888888776632 22 113 6778888888887766555 44678888888888877654 66677778888
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEECcCc-ccccc-CChhhhhcCCCccEEEeeCc-ccccc-CCccccCCC-CcCE
Q 042476 104 RSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN-DFFGS-IPTWVGERFPRLLILNLRSN-KFNGS-LPVQLCHLT-FLRI 178 (433)
Q Consensus 104 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~-~L~~ 178 (433)
++|++++|.+++..+..+..+++|++|++++| .+.+. ++..+ ..+++|++|++++| .+++. ++..+..++ +|++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 88888888777666777777888888888887 45432 33333 36788888888887 76643 455566777 7888
Q ss_pred EEccCCc--Cc-ccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCc-c
Q 042476 179 LDVAHNN--LS-GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNN-F 254 (433)
Q Consensus 179 L~l~~n~--~~-~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~-~ 254 (433)
|++++|. ++ +.++ .....+++|+.|++++|. +
T Consensus 200 L~l~~~~~~~~~~~l~--------------------------------------------~~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLS--------------------------------------------TLVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp EECCSCGGGSCHHHHH--------------------------------------------HHHHHCTTCSEEECTTCTTC
T ss_pred EEeCCCcccCCHHHHH--------------------------------------------HHHhhCCCCCEEeCCCCCcC
Confidence 8877773 32 1111 122335567778888877 5
Q ss_pred cccCCccccCCccCceEeCcCcc-cccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCC-CCCCeeeCcCCcCcccCCC
Q 042476 255 SGEIPMQLTNLEGLQTLNLSHNF-FVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSL-SFLNHLNLSENDLSGQIPS 332 (433)
Q Consensus 255 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~ 332 (433)
++..+..+..+++|++|++++|. +.......++.+++|+.|++++| ++.. .+..+ ..+..|++++|++++..|.
T Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 65666677777888888888874 33222235667788888888877 3322 22222 2366667777777776664
Q ss_pred C
Q 042476 333 S 333 (433)
Q Consensus 333 ~ 333 (433)
.
T Consensus 312 ~ 312 (336)
T 2ast_B 312 T 312 (336)
T ss_dssp S
T ss_pred c
Confidence 3
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.4e-22 Score=180.68 Aligned_cols=132 Identities=19% Similarity=0.155 Sum_probs=68.7
Q ss_pred CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCc-CcccCCcccCCCCCcCEEEccC-CcccccCCccccCCCCCcEE
Q 042476 53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNY-FTGNLPISIGTLSSLRSLHLRN-NRLAGIFPVSLKNCSSLISL 130 (433)
Q Consensus 53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 130 (433)
+++++|++++|++++..+..|.++++|++|++++|+ ++...+.+|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 355555565555555444455555556666665554 5544444555555555555555 55554444555555555555
Q ss_pred ECcCccccccCChhhhhcCCCcc---EEEeeCc-cccccCCccccCCCCcC-EEEccCCcCc
Q 042476 131 DIGENDFFGSIPTWVGERFPRLL---ILNLRSN-KFNGSLPVQLCHLTFLR-ILDVAHNNLS 187 (433)
Q Consensus 131 ~L~~n~~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~ 187 (433)
++++|.+. .+|. +..+++|+ +|++++| .+....+..+.++++|+ .|++++|.++
T Consensus 111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 55555552 2443 22344444 5555555 44433334445555555 5555554444
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.7e-22 Score=180.12 Aligned_cols=196 Identities=16% Similarity=0.202 Sum_probs=121.7
Q ss_pred CCCEEEccCCcCcccCCcccCCCCCcCEEEccCCc-ccccCCccccCCCCCcEEECcC-ccccccCChhhhhcCCCccEE
Q 042476 78 HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNR-LAGIFPVSLKNCSSLISLDIGE-NDFFGSIPTWVGERFPRLLIL 155 (433)
Q Consensus 78 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L 155 (433)
+|++|++++|++++..+.+|.++++|++|++++|. ++.+.+..|..+++|++|++++ |.+ ..++...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCHHHhCCCCCCCEE
Confidence 67888888888876666677778888888888886 7766666777777777777777 666 35554444467777777
Q ss_pred EeeCccccccCCccccCCCCcC---EEEccCC-cCcccCCCCccccccccccccccccccccccccCCceeeecceeeec
Q 042476 156 NLRSNKFNGSLPVQLCHLTFLR---ILDVAHN-NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTK 231 (433)
Q Consensus 156 ~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (433)
++++|.+.+ +|. +..+++|+ .|++++| .+++..+..+..
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~----------------------------------- 153 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG----------------------------------- 153 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT-----------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc-----------------------------------
Confidence 777777764 444 66666666 7777776 555333333333
Q ss_pred cceeehhhhcccee-EEEcccCcccccCCccccCCccCceEeCcCcc-cccCCCcccCCC-CCCCEEeCcCCcCCCCCCc
Q 042476 232 GLLVEYNSILNLVR-SIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF-FVGKIPENIGNM-RSIESLDFSTNRLFGRIPQ 308 (433)
Q Consensus 232 ~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~ 308 (433)
+++|+ .|++++|.++...+..+.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|++++. |.
T Consensus 154 ---------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~ 222 (239)
T 2xwt_C 154 ---------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PS 222 (239)
T ss_dssp ---------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CC
T ss_pred ---------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Ch
Confidence 23355 5666666665333333333 566666666663 654445556666 6666666666666533 22
Q ss_pred cccCCCCCCeeeCcCC
Q 042476 309 SMSSLSFLNHLNLSEN 324 (433)
Q Consensus 309 ~l~~l~~L~~L~L~~n 324 (433)
. .+++|+.|+++++
T Consensus 223 ~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 223 K--GLEHLKELIARNT 236 (239)
T ss_dssp T--TCTTCSEEECTTC
T ss_pred h--HhccCceeeccCc
Confidence 2 4455666666554
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2e-22 Score=180.96 Aligned_cols=117 Identities=17% Similarity=0.201 Sum_probs=77.3
Q ss_pred eeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcC
Q 042476 244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE 323 (433)
Q Consensus 244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 323 (433)
|++|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 55566666666655555567788888888888888866666788888899999999988877777888888899999999
Q ss_pred CcCcccCCCCcccCc------cCcccccCCcCCCCCCC-CCCCC
Q 042476 324 NDLSGQIPSSTQLQS------FGASCFSGNDLCGAPLP-DCTEK 360 (433)
Q Consensus 324 n~l~~~~p~~~~~~~------l~~~~~~~n~l~~~~~~-~c~~~ 360 (433)
|++++.......+.. ....+..++.+++.|.. .|...
T Consensus 189 N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 189 NQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp CCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred CceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 998876443321111 11233445566666554 66654
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=188.24 Aligned_cols=232 Identities=17% Similarity=0.212 Sum_probs=183.5
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCccc--CCCCCCCEEEccCCcCcccCC----cccCC
Q 042476 26 FEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCW--MNWPHLQVLNLDDNYFTGNLP----ISIGT 99 (433)
Q Consensus 26 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~p----~~~~~ 99 (433)
..++.|.+.++.++......+.....+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 357888888887764322111111225679999999999999999888 899999999999999997544 34567
Q ss_pred CCCcCEEEccCCcccccCCccccCCCCCcEEECcCcccccc--CC-hhhhhcCCCccEEEeeCccccccCCc----cccC
Q 042476 100 LSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGS--IP-TWVGERFPRLLILNLRSNKFNGSLPV----QLCH 172 (433)
Q Consensus 100 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~-~~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~ 172 (433)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++ ......+++|++|++++|.++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 99999999999999988889999999999999999987442 22 2222478999999999999973 222 3578
Q ss_pred CCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccC
Q 042476 173 LTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKN 252 (433)
Q Consensus 173 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n 252 (433)
+++|++|++++|.+.+..|..+..+.. +++|++|++++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~-----------------------------------------~~~L~~L~Ls~N 261 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMW-----------------------------------------SSALNSLNLSFA 261 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCC-----------------------------------------CTTCCCEECCSS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccC-----------------------------------------cCcCCEEECCCC
Confidence 899999999999999777776655432 345889999999
Q ss_pred cccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCC
Q 042476 253 NFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFG 304 (433)
Q Consensus 253 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 304 (433)
.++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 998 6676664 7999999999999854 43 6788999999999999864
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=4.5e-24 Score=200.33 Aligned_cols=252 Identities=15% Similarity=0.181 Sum_probs=186.4
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCc-CCcccCCCCCCC
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGD-IPDCWMNWPHLQ 80 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~ 80 (433)
+|+++|.+.+..- +.+. .++++.|++++|.+.+..+.. ..+++|++|++++|.+.+. ++..+..+++|+
T Consensus 52 l~l~~~~~~~~~~----~~~~--~~~l~~L~l~~n~l~~~~~~~----~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 52 LDLTGKNLHPDVT----GRLL--SQGVIAFRCPRSFMDQPLAEH----FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp EECTTCBCCHHHH----HHHH--HTTCSEEECTTCEECSCCCSC----CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred eccccccCCHHHH----Hhhh--hccceEEEcCCccccccchhh----ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 6777776663210 1100 157999999999999876653 3489999999999998865 788889999999
Q ss_pred EEEccCCcCcccCCcccCCCCCcCEEEccCC-ccccc-CCccccCCCCCcEEECcCc-ccccc-CChhhhhcCC-CccEE
Q 042476 81 VLNLDDNYFTGNLPISIGTLSSLRSLHLRNN-RLAGI-FPVSLKNCSSLISLDIGEN-DFFGS-IPTWVGERFP-RLLIL 155 (433)
Q Consensus 81 ~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~~l~-~L~~L 155 (433)
+|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..+. .++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEE
Confidence 9999999999888889999999999999999 67652 6666889999999999999 77543 444444 789 99999
Q ss_pred EeeCcc--cc-ccCCccccCCCCcCEEEccCCc-CcccCCCCccccccccccccccccccccccccCCceeeecceeeec
Q 042476 156 NLRSNK--FN-GSLPVQLCHLTFLRILDVAHNN-LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTK 231 (433)
Q Consensus 156 ~L~~n~--l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (433)
++++|. ++ ..++..+..+++|++|++++|. +++..+..+..+
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l---------------------------------- 246 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL---------------------------------- 246 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC----------------------------------
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC----------------------------------
Confidence 999994 54 3456677889999999999998 655555444443
Q ss_pred cceeehhhhccceeEEEcccCc-ccccCCccccCCccCceEeCcCcccccCCCcccCCC-CCCCEEeCcCCcCCCCCCcc
Q 042476 232 GLLVEYNSILNLVRSIDISKNN-FSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNM-RSIESLDFSTNRLFGRIPQS 309 (433)
Q Consensus 232 ~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~ 309 (433)
++|++|++++|. ++......+.++++|+.|++++| ++.. .+..+ .++..|++++|.+++..|..
T Consensus 247 ----------~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 247 ----------NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp ----------TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred ----------CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 446677777774 32222234667788888888887 4322 22223 24666778888888877776
Q ss_pred ccC
Q 042476 310 MSS 312 (433)
Q Consensus 310 l~~ 312 (433)
+..
T Consensus 313 ~~~ 315 (336)
T 2ast_B 313 IGN 315 (336)
T ss_dssp CSS
T ss_pred ccc
Confidence 553
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2e-24 Score=206.73 Aligned_cols=239 Identities=21% Similarity=0.226 Sum_probs=185.4
Q ss_pred CCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCc---CcCcCCccc-------CCCCCCCEEEccCCcCcc--
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNY---FSGDIPDCW-------MNWPHLQVLNLDDNYFTG-- 91 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~L~~n~i~~-- 91 (433)
+++|++|++++|.+++..+..++.. ..+++|++|++++|. +.+.+|..+ ..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 6789999999999998765554322 568999999999964 444555544 689999999999999996
Q ss_pred --cCCcccCCCCCcCEEEccCCcccccCCcc----ccCC---------CCCcEEECcCcccc-ccCCh--hhhhcCCCcc
Q 042476 92 --NLPISIGTLSSLRSLHLRNNRLAGIFPVS----LKNC---------SSLISLDIGENDFF-GSIPT--WVGERFPRLL 153 (433)
Q Consensus 92 --~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~L~~n~~~-~~~~~--~~~~~l~~L~ 153 (433)
.+|..+..+++|++|++++|.+....+.. +..+ ++|++|++++|.+. +.++. ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 46778889999999999999987443333 3344 89999999999985 33442 2233789999
Q ss_pred EEEeeCccccc-----cCCccccCCCCcCEEEccCCcCc----ccCCCCccccccccccccccccccccccccCCceeee
Q 042476 154 ILNLRSNKFNG-----SLPVQLCHLTFLRILDVAHNNLS----GTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFE 224 (433)
Q Consensus 154 ~L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~~~----~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 224 (433)
+|++++|.+.. ..+..+..+++|+.|++++|.++ ..+|..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l------------------------------ 240 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL------------------------------ 240 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG------------------------------
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH------------------------------
Confidence 99999999872 23447889999999999999985 2333322
Q ss_pred cceeeeccceeehhhhccceeEEEcccCccccc----CCccc--cCCccCceEeCcCccccc----CCCccc-CCCCCCC
Q 042476 225 DASVVTKGLLVEYNSILNLVRSIDISKNNFSGE----IPMQL--TNLEGLQTLNLSHNFFVG----KIPENI-GNMRSIE 293 (433)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~--~~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~ 293 (433)
..+++|+.|++++|.+++. ++..+ ..+++|+.|+|++|.+++ .+|..+ .++++|+
T Consensus 241 --------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 241 --------------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp --------------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred --------------ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 2355688899999998755 45555 348999999999999987 477776 5689999
Q ss_pred EEeCcCCcCCCCCC
Q 042476 294 SLDFSTNRLFGRIP 307 (433)
Q Consensus 294 ~L~Ls~n~l~~~~~ 307 (433)
.|++++|++++..+
T Consensus 307 ~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 307 FLELNGNRFSEEDD 320 (386)
T ss_dssp EEECTTSBSCTTSH
T ss_pred EEEccCCcCCcchh
Confidence 99999999987663
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.4e-21 Score=175.39 Aligned_cols=176 Identities=18% Similarity=0.200 Sum_probs=128.3
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV 81 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (433)
+|++++.++ .+|.. + .++++.|++++|.+++..+..+ .++++|++|++++|.+++..+..|.++++|++
T Consensus 19 l~~~~~~l~-~~p~~----~---~~~l~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 19 VDCQGKSLD-SVPSG----I---PADTEKLDLQSTGLATLSDATF---RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp EECTTCCCS-SCCSC----C---CTTCCEEECTTSCCCCCCTTTT---TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred EecCCCCcc-ccCCC----C---CCCCCEEEccCCCcCccCHhHh---cCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 566666666 33421 1 2467888888888877666666 45778888888888887777777778888888
Q ss_pred EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcc
Q 042476 82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNK 161 (433)
Q Consensus 82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 161 (433)
|++++|.++...+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCc
Confidence 888888887666667777888888888888887666666777888888888888774 5555444467888888888888
Q ss_pred ccccCCccccCCCCcCEEEccCCcCccc
Q 042476 162 FNGSLPVQLCHLTFLRILDVAHNNLSGT 189 (433)
Q Consensus 162 l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 189 (433)
+.+..+..+..+++|+.|++++|.+...
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8766666777788888888888877643
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=8.9e-24 Score=200.32 Aligned_cols=257 Identities=18% Similarity=0.185 Sum_probs=191.5
Q ss_pred EEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCC----cccCCCC-CCCEEEccCCcCcccCCcccCCC----
Q 042476 30 LLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIP----DCWMNWP-HLQVLNLDDNYFTGNLPISIGTL---- 100 (433)
Q Consensus 30 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~p~~~~~l---- 100 (433)
.+++++|++++.+|..+ ...++|++|++++|.+++..+ +.|.+++ +|++|+|++|.+....+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT---SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EEECCCCTTCCHHHHHH---TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred ccccccccchHHHHHHH---hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 46788999998887766 335669999999999987666 7778888 89999999999987767666654
Q ss_pred -CCcCEEEccCCcccccCCcc----ccCC-CCCcEEECcCccccccCChhhhh---c-CCCccEEEeeCcccccc----C
Q 042476 101 -SSLRSLHLRNNRLAGIFPVS----LKNC-SSLISLDIGENDFFGSIPTWVGE---R-FPRLLILNLRSNKFNGS----L 166 (433)
Q Consensus 101 -~~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~~~~~~~~~~~~---~-l~~L~~L~L~~n~l~~~----~ 166 (433)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..+..+.. . .++|++|++++|.+... +
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 89999999999998766554 4444 89999999999985444433332 2 36899999999998843 3
Q ss_pred CccccCCC-CcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhc-cce
Q 042476 167 PVQLCHLT-FLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSIL-NLV 244 (433)
Q Consensus 167 ~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L 244 (433)
+..+..++ +|++|++++|.+++..+..+.. .+... ++|
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~----------------------------------------~l~~~~~~L 198 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAK----------------------------------------FLASIPASV 198 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHH----------------------------------------HHHTSCTTC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHH----------------------------------------HHHhCCCCC
Confidence 34445555 8999999999887544332211 11123 479
Q ss_pred eEEEcccCccccc----CCccccC-CccCceEeCcCcccccCCC----cccCCCCCCCEEeCcCCcCCCC-------CCc
Q 042476 245 RSIDISKNNFSGE----IPMQLTN-LEGLQTLNLSHNFFVGKIP----ENIGNMRSIESLDFSTNRLFGR-------IPQ 308 (433)
Q Consensus 245 ~~L~L~~n~~~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~-------~~~ 308 (433)
++|++++|.++.. ++..+.. .++|++|+|++|++++..+ ..+..+++|+.|++++|.+.+. ++.
T Consensus 199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~ 278 (362)
T 3goz_A 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA 278 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence 9999999999863 3444444 4599999999999986544 3456789999999999985433 334
Q ss_pred cccCCCCCCeeeCcCCcCccc
Q 042476 309 SMSSLSFLNHLNLSENDLSGQ 329 (433)
Q Consensus 309 ~l~~l~~L~~L~L~~n~l~~~ 329 (433)
.+..+++|+.||+++|++...
T Consensus 279 ~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 279 AFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TSTTCCEEEEECTTSCBCCGG
T ss_pred HhccCCceEEEecCCCcCCCc
Confidence 567788899999999998765
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.3e-21 Score=181.09 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=47.0
Q ss_pred ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476 243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS 322 (433)
Q Consensus 243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 322 (433)
+|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|+++
T Consensus 152 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence 34555555555543222 5556666666666666653322 5566667777777776654432 5666667777777
Q ss_pred CCcCcc
Q 042476 323 ENDLSG 328 (433)
Q Consensus 323 ~n~l~~ 328 (433)
+|++++
T Consensus 226 ~N~i~~ 231 (308)
T 1h6u_A 226 NQTITN 231 (308)
T ss_dssp EEEEEC
T ss_pred CCeeec
Confidence 776664
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.7e-21 Score=180.19 Aligned_cols=192 Identities=21% Similarity=0.296 Sum_probs=139.2
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
+++|++|++++|.+.. ++ .+..+++|++|++++|.+... +. +..+++|++|++++|.+.+. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 6778888888887764 34 467788888888888888743 33 77888888888888887753 3577788888888
Q ss_pred CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476 132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA 211 (433)
Q Consensus 132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~ 211 (433)
+++|.+. .++. + ..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++ ++. +..
T Consensus 114 l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~--------------- 171 (308)
T 1h6u_A 114 LTSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LAN--------------- 171 (308)
T ss_dssp CTTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTT---------------
T ss_pred CCCCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcC---------------
Confidence 8888874 3443 3 367888888888888774422 7778888888888887763 221 222
Q ss_pred ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCC
Q 042476 212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRS 291 (433)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 291 (433)
+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++
T Consensus 172 -----------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 218 (308)
T 1h6u_A 172 -----------------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN 218 (308)
T ss_dssp -----------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred -----------------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence 4457778888888775433 6778888888888888875543 778888
Q ss_pred CCEEeCcCCcCCC
Q 042476 292 IESLDFSTNRLFG 304 (433)
Q Consensus 292 L~~L~Ls~n~l~~ 304 (433)
|+.|++++|++++
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 8888888888864
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=8.9e-21 Score=178.79 Aligned_cols=240 Identities=15% Similarity=0.155 Sum_probs=150.3
Q ss_pred cEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCC-cccCCCCCcCE-E
Q 042476 29 GLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLP-ISIGTLSSLRS-L 106 (433)
Q Consensus 29 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p-~~~~~l~~L~~-L 106 (433)
++++-++++++ .+|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+| .+|.++++++. +
T Consensus 12 ~~v~C~~~~Lt-~iP~~l-----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL-----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTCC-SCCTTC-----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCCC-ccCcCc-----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 45666677776 355444 3567777888877776556677778888888888877754443 46777777665 4
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeC-ccccccCCccccCCC-CcCEEEccCC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS-NKFNGSLPVQLCHLT-FLRILDVAHN 184 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n 184 (433)
.+.+|.+..+.|..|..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..+..+. .++.|++++|
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred cccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 55567777777777777788888888877773 44444333456677777755 445544444555553 5777888888
Q ss_pred cCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEccc-CcccccCCcccc
Q 042476 185 NLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISK-NNFSGEIPMQLT 263 (433)
Q Consensus 185 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~ 263 (433)
.++ .++..... ..+|+++++.+ |.++...+..|.
T Consensus 165 ~i~-~i~~~~f~--------------------------------------------~~~L~~l~l~~~n~l~~i~~~~f~ 199 (350)
T 4ay9_X 165 GIQ-EIHNSAFN--------------------------------------------GTQLDELNLSDNNNLEELPNDVFH 199 (350)
T ss_dssp CCC-EECTTSST--------------------------------------------TEEEEEEECTTCTTCCCCCTTTTT
T ss_pred ccc-CCChhhcc--------------------------------------------ccchhHHhhccCCcccCCCHHHhc
Confidence 776 33322211 12356666654 445544445667
Q ss_pred CCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCC
Q 042476 264 NLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSEN 324 (433)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 324 (433)
++++|+.|+|++|+++. +|.. .+.+|+.|.+.++.-...+|. +..+++|+.+++.++
T Consensus 200 ~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 200 GASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp TEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred cCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 77778888888887773 3331 235566666555544445553 667777777777654
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.3e-24 Score=219.93 Aligned_cols=325 Identities=10% Similarity=0.014 Sum_probs=165.9
Q ss_pred CCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCcCcC----cCCcccCCCCCCCEEEccCCcCcccCCcccCC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNYFSG----DIPDCWMNWPHLQVLNLDDNYFTGNLPISIGT 99 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~ 99 (433)
+++|++|++++|.+++.....+... ..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ +|..+.+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 5578888888887765532211111 346778888888777752 334445567788888888877763 5566666
Q ss_pred CCCcCEEEccCCccc---ccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCC-ccccCCCC
Q 042476 100 LSSLRSLHLRNNRLA---GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP-VQLCHLTF 175 (433)
Q Consensus 100 l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~ 175 (433)
+++|++|++++.... ...+..+..+++|+.|+++++.. ..+|..+. .+++|++|++++|.++.... ..+..+++
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 777777777643211 12223344555555555555422 23333322 45555555555555432211 22345555
Q ss_pred cCEEEccCCcCcccCCCCcccccccccccccc----------cccccc----cccc-CCceeeecc--eeeeccceeehh
Q 042476 176 LRILDVAHNNLSGTIPRCINNFTAMATINSSN----------QKNAIY----YFVT-RGNIVFEDA--SVVTKGLLVEYN 238 (433)
Q Consensus 176 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~----------~~~~~~----~~~~-~~~~~~~~~--~~~~~~~~~~~~ 238 (433)
|++|+++++...+.++.....+++|+.|+++. +..... .... ........+ ............
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 55555552211122222223444555555442 110000 0000 000000000 000011111122
Q ss_pred hhccceeEEEcc----cCccccc-----CCccccCCccCceEeCcCcc--cccCCCcccC-CCCCCCEEeCcCCcCCC-C
Q 042476 239 SILNLVRSIDIS----KNNFSGE-----IPMQLTNLEGLQTLNLSHNF--FVGKIPENIG-NMRSIESLDFSTNRLFG-R 305 (433)
Q Consensus 239 ~~~~~L~~L~L~----~n~~~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~l~-~l~~L~~L~Ls~n~l~~-~ 305 (433)
..+++|+.|+++ .|.+++. ++..+.++++|+.|+++.|. +++..+..++ .+++|+.|++++|.+++ .
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence 236677777775 4455532 22234557777777776433 4444333332 36778888888887765 3
Q ss_pred CCccccCCCCCCeeeCcCCcCccc-CCC-CcccCccCcccccCCcCCCC
Q 042476 306 IPQSMSSLSFLNHLNLSENDLSGQ-IPS-STQLQSFGASCFSGNDLCGA 352 (433)
Q Consensus 306 ~~~~l~~l~~L~~L~L~~n~l~~~-~p~-~~~~~~l~~~~~~~n~l~~~ 352 (433)
++..+..+++|++|++++|+++.. ++. ...++.++.+++++|.+++.
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 445556777888888888876543 121 13456777778888776654
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=5e-21 Score=180.50 Aligned_cols=241 Identities=14% Similarity=0.066 Sum_probs=163.4
Q ss_pred cEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCC-ccccCCCCCcE-EECc
Q 042476 56 ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFP-VSLKNCSSLIS-LDIG 133 (433)
Q Consensus 56 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~ 133 (433)
++++-++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+| .+|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56666777777 456554 2568888888888885555678888888888888888755443 45677777665 4455
Q ss_pred CccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccC-CcCcccCCCCccccccccccccccccccc
Q 042476 134 ENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAH-NNLSGTIPRCINNFTAMATINSSNQKNAI 212 (433)
Q Consensus 134 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 212 (433)
.|.+ ..+++..+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+
T Consensus 89 ~N~l-~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~--------------- 152 (350)
T 4ay9_X 89 ANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL--------------- 152 (350)
T ss_dssp ETTC-CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS---------------
T ss_pred CCcc-cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc---------------
Confidence 5666 455555555778888888888877755555555666677777754 34432222222211
Q ss_pred cccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcC-cccccCCCcccCCCCC
Q 042476 213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSH-NFFVGKIPENIGNMRS 291 (433)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~ 291 (433)
...++.|++++|.++...+..+ ...+|++|++++ |.++...++.|..+++
T Consensus 153 ----------------------------~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 153 ----------------------------SFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp ----------------------------BSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred ----------------------------chhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcc
Confidence 2347889999999985544444 557899999986 5666444467899999
Q ss_pred CCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCCcccCccCcccccCC
Q 042476 292 IESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSSTQLQSFGASCFSGN 347 (433)
Q Consensus 292 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~l~~~~~~~n 347 (433)
|+.|++++|+++...+..+ .+|+.|.+.++.-...+|....++.++.+++..+
T Consensus 204 L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 204 PVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred cchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 9999999999986555554 4566666655554457787778888888777654
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.5e-20 Score=163.80 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=36.9
Q ss_pred CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476 53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI 132 (433)
Q Consensus 53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 132 (433)
+++++|++++|.+++..+..|.++++|++|++++|++....+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34444444444444333334444444444444444444333333444444444444444444333333344444444444
Q ss_pred cCccc
Q 042476 133 GENDF 137 (433)
Q Consensus 133 ~~n~~ 137 (433)
++|.+
T Consensus 108 ~~N~l 112 (208)
T 2o6s_A 108 NTNQL 112 (208)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 44443
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=4.1e-20 Score=160.92 Aligned_cols=129 Identities=22% Similarity=0.232 Sum_probs=92.2
Q ss_pred cEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCc
Q 042476 56 ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN 135 (433)
Q Consensus 56 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 135 (433)
+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45666666665 344433 357888888888888666666778888888888888888666666777888888888888
Q ss_pred cccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcc
Q 042476 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSG 188 (433)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 188 (433)
.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 774 5555544467778888887777776555566777777777777777663
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=6.5e-23 Score=207.35 Aligned_cols=343 Identities=12% Similarity=0.051 Sum_probs=225.4
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCCc-ccccCCccccCCCCCCCccEEEcCCCcCcCc----CCcccCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNA-LSGSIIHLICNGDNKSVIISLKLSKNYFSGD----IPDCWMN 75 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~ 75 (433)
+|||++|.+++..+.+..... ..+|++|+++++. ++......+. .++++|++|++++|.+.+. ++..+.+
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~---~~~L~~L~L~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKAR---ADDLETLKLDKCSGFTTDGLLSIV--THCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHH---GGGCCEEEEESCEEEEHHHHHHHH--HHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred eEEeeccEecHHHHHHHHHhc---cccCcEEECcCCCCcCHHHHHHHH--hhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 367777777655432211111 1349999999986 3222111111 3489999999999998755 3334567
Q ss_pred CCCCCEEEccCCcCc----ccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCcccc---ccCChhhhhc
Q 042476 76 WPHLQVLNLDDNYFT----GNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFF---GSIPTWVGER 148 (433)
Q Consensus 76 l~~L~~L~L~~n~i~----~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~~ 148 (433)
+++|++|++++|.+. ..++..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... ...+..+. .
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~ 268 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV-F 268 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC-C
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh-c
Confidence 899999999999987 3345556788999999999999885 6688999999999999864321 12223333 6
Q ss_pred CCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCC-CCcccccccccccccccccc--ccccc-cCCceeee
Q 042476 149 FPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIP-RCINNFTAMATINSSNQKNA--IYYFV-TRGNIVFE 224 (433)
Q Consensus 149 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~~~~~--~~~~~-~~~~~~~~ 224 (433)
+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|+.|++..+... +.... ........
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 789999999886443 567778889999999999999764332 34578899999988733111 00000 00001111
Q ss_pred cce-------------eeeccceeehhhhccceeEEEcccCcccccCCccccC-CccCceEeCc----CcccccC-----
Q 042476 225 DAS-------------VVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN-LEGLQTLNLS----HNFFVGK----- 281 (433)
Q Consensus 225 ~~~-------------~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~----- 281 (433)
.+. .............+++|++|+++.+.+++..+..+.. +++|+.|+++ .|++++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 111 1111112223445788999999888887665555554 7889999996 5666643
Q ss_pred CCcccCCCCCCCEEeCcCCc--CCCCCCccc-cCCCCCCeeeCcCCcCccc-CCC-CcccCccCcccccCCcCCC
Q 042476 282 IPENIGNMRSIESLDFSTNR--LFGRIPQSM-SSLSFLNHLNLSENDLSGQ-IPS-STQLQSFGASCFSGNDLCG 351 (433)
Q Consensus 282 ~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~l-~~l~~L~~L~L~~n~l~~~-~p~-~~~~~~l~~~~~~~n~l~~ 351 (433)
++..+..+++|+.|++++|. +++..+..+ ..+++|+.|++++|++++. ++. ...++.++.+++++|.+++
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 33335668899999997654 555444433 3478899999999998752 221 1345778889999987653
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.2e-19 Score=180.26 Aligned_cols=186 Identities=28% Similarity=0.397 Sum_probs=91.6
Q ss_pred CccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECc
Q 042476 54 VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIG 133 (433)
Q Consensus 54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 133 (433)
+++.|++++|.+++ +|..+ .++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555543 33322 244555555555555 344 234455555555555553 333 332 55555555
Q ss_pred CccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccc
Q 042476 134 ENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIY 213 (433)
Q Consensus 134 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 213 (433)
+|.+.+ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +.
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------ 179 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------ 179 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence 555532 443 24555555555555553 333 34455555555555542 332 21
Q ss_pred ccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccC-------ceEeCcCcccccCCCccc
Q 042476 214 YFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGL-------QTLNLSHNFFVGKIPENI 286 (433)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~l 286 (433)
++|+.|++++|.++ .+|. +.. +| +.|+|++|+++ .+|..+
T Consensus 180 ----------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 180 ----------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp ----------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred ----------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 12445555555554 3333 322 44 66666666665 455555
Q ss_pred CCCCCCCEEeCcCCcCCCCCCccccC
Q 042476 287 GNMRSIESLDFSTNRLFGRIPQSMSS 312 (433)
Q Consensus 287 ~~l~~L~~L~Ls~n~l~~~~~~~l~~ 312 (433)
..+++|+.|++++|.+++.+|..+..
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 55666666666666666666555544
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.4e-19 Score=179.77 Aligned_cols=182 Identities=24% Similarity=0.368 Sum_probs=114.2
Q ss_pred CCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEe
Q 042476 78 HLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNL 157 (433)
Q Consensus 78 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 157 (433)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+.+ +|. +. . +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEEC
Confidence 67777777777764 55544 256777777777776 344 345677777777777643 655 32 2 7777777
Q ss_pred eCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeeh
Q 042476 158 RSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEY 237 (433)
Q Consensus 158 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (433)
++|.+++ +|. .+++|+.|++++|.+++ +|. .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~----------------------------------------- 158 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L----------------------------------------- 158 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------------------------------------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------------------------------------
Confidence 7777764 444 56677777777777663 332 0
Q ss_pred hhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCC-------CEEeCcCCcCCCCCCccc
Q 042476 238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSI-------ESLDFSTNRLFGRIPQSM 310 (433)
Q Consensus 238 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~~~~l 310 (433)
+++|+.|++++|.+++ +|. +. ++|+.|+|++|+++ .+|. +.. +| +.|++++|+++ .+|..+
T Consensus 159 ---l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 159 ---PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp ---CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred ---CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 2346667777777764 444 44 67777777777776 5555 433 55 77777777775 456656
Q ss_pred cCCCCCCeeeCcCCcCcccCCC
Q 042476 311 SSLSFLNHLNLSENDLSGQIPS 332 (433)
Q Consensus 311 ~~l~~L~~L~L~~n~l~~~~p~ 332 (433)
..+++|+.|++++|++++.+|.
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHH
Confidence 6677777777777777765543
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=171.60 Aligned_cols=157 Identities=25% Similarity=0.278 Sum_probs=75.4
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
.++.|++++|++++..+..+. .++++|+.|+|++|++++..+..|.++++|++|+|++|++....+..|.++++|++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~--~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTP--TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSS--SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccChhhhh--hcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 345555555555544433331 034555555555555554444455555555555555555554444445555555555
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhh---hcCCCccEEEeeCccccccCCccccCCCC--cCEEEc
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVG---ERFPRLLILNLRSNKFNGSLPVQLCHLTF--LRILDV 181 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l 181 (433)
+|++|.+....+..|..+++|++|+|++|.+ ..+|..++ ..+++|+.|+|++|.+....+..+..++. ++.|++
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence 5555555544445555555555555555555 23444433 23455555555555554332233444443 244555
Q ss_pred cCCcC
Q 042476 182 AHNNL 186 (433)
Q Consensus 182 ~~n~~ 186 (433)
++|.+
T Consensus 197 ~~N~~ 201 (361)
T 2xot_A 197 HNNPL 201 (361)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 55444
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=7.2e-19 Score=154.26 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=127.4
Q ss_pred ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCC-cccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIP-DCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
-+.+++++|.++. +|..+ ...+++|++++|.+++..+ ..|.++++|++|+|++|.+++..+.+|.++++|++|
T Consensus 13 ~~~l~~s~n~l~~-iP~~~-----~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPEHI-----PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TTEEECCSSCCSS-CCSCC-----CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEeEeCCCCccc-CccCC-----CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 4588899988875 55554 4567889999999887644 557888999999999999987777788999999999
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 186 (433)
++++|.+++..+..|..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999888887888899999999999988544454444 789999999999999877788899999999999999988
Q ss_pred ccc
Q 042476 187 SGT 189 (433)
Q Consensus 187 ~~~ 189 (433)
...
T Consensus 166 ~c~ 168 (220)
T 2v70_A 166 NCN 168 (220)
T ss_dssp ECS
T ss_pred cCC
Confidence 643
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=154.62 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=69.7
Q ss_pred eeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcC
Q 042476 244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE 323 (433)
Q Consensus 244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 323 (433)
|++|++++|.+++..+..|..+++|++|+|++|++++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 55666666666655566677788888888888888877778888888888888888888877788888888888888888
Q ss_pred CcCcccCCC
Q 042476 324 NDLSGQIPS 332 (433)
Q Consensus 324 n~l~~~~p~ 332 (433)
|++.+.++.
T Consensus 163 N~l~c~c~l 171 (220)
T 2v70_A 163 NPFNCNCYL 171 (220)
T ss_dssp CCEECSGGG
T ss_pred cCCcCCCch
Confidence 888876553
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.4e-18 Score=152.33 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=124.4
Q ss_pred ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476 28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH 107 (433)
Q Consensus 28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 107 (433)
-+.++.+++.++. +|..+ .++++.|++++|.+++..+..|..+++|++|+|++|.+.+..|.+|.++++|++|+
T Consensus 13 ~~~v~c~~~~l~~-iP~~l-----~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~ 86 (220)
T 2v9t_B 13 NNIVDCRGKGLTE-IPTNL-----PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86 (220)
T ss_dssp TTEEECTTSCCSS-CCSSC-----CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred CCEEEcCCCCcCc-CCCcc-----CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence 3578888888864 45444 46888899999988877777888889999999999998877788888899999999
Q ss_pred ccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476 108 LRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
+++|.++...+..|..+++|++|++++|.+.+ ++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999887766678888999999999998854 44444447889999999999988777777888889999999988875
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=1.2e-18 Score=152.91 Aligned_cols=156 Identities=18% Similarity=0.207 Sum_probs=105.5
Q ss_pred cEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccc
Q 042476 128 ISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSN 207 (433)
Q Consensus 128 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 207 (433)
+.++++++.+ ..+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.+++..|..|..+
T Consensus 14 ~~v~c~~~~l-~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l---------- 79 (220)
T 2v9t_B 14 NIVDCRGKGL-TEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL---------- 79 (220)
T ss_dssp TEEECTTSCC-SSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC----------
T ss_pred CEEEcCCCCc-CcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC----------
Confidence 3455555554 34444332 456666666666665555566666666666666666664445444433
Q ss_pred ccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccC
Q 042476 208 QKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIG 287 (433)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 287 (433)
++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..|.
T Consensus 80 ----------------------------------~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 80 ----------------------------------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp ----------------------------------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ----------------------------------cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence 2355666666666655555567788888888888888877778888
Q ss_pred CCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCC
Q 042476 288 NMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIP 331 (433)
Q Consensus 288 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 331 (433)
.+++|+.|++++|++++..+..+..+++|+.|++++|++.+...
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 88888888888888887777778888888888888888877543
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=3.1e-18 Score=151.20 Aligned_cols=156 Identities=18% Similarity=0.113 Sum_probs=136.7
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
+-+.++.+++.++. +|..+ .++|++|++++|.+++..|..|.++++|++|+|++|.+....+..|.++++|++|
T Consensus 20 s~~~v~c~~~~l~~-ip~~~-----~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPAGI-----PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp ETTEEECTTSCCSS-CCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCEeEccCCCcCc-cCCCC-----CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 46789999998864 55444 5899999999999999889999999999999999999986666778999999999
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 186 (433)
++++|.+++..+..|..+++|++|++++|.+. .+|..+. .+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 99999999887778899999999999999994 8888876 799999999999999976667899999999999999998
Q ss_pred cccC
Q 042476 187 SGTI 190 (433)
Q Consensus 187 ~~~~ 190 (433)
....
T Consensus 172 ~c~c 175 (229)
T 3e6j_A 172 DCEC 175 (229)
T ss_dssp CTTB
T ss_pred cCCc
Confidence 7443
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=2.7e-21 Score=195.53 Aligned_cols=339 Identities=16% Similarity=0.119 Sum_probs=193.6
Q ss_pred CEEeecccCcccCCCCCCCCCCCCCCCccEEEccCC-cccccCCccccCCCCCCCccEEEcCCCcCcCcCCcc----cCC
Q 042476 1 ELNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNN-ALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDC----WMN 75 (433)
Q Consensus 1 ~L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~~ 75 (433)
+|+|++|.+++..+.... ..+++|++|++++| .+++.....+. .++++|++|++++|.+++..+.. ...
T Consensus 109 ~L~L~~~~~~~~~~~~l~----~~~~~L~~L~L~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIA----KSFKNFKVLVLSSCEGFSTDGLAAIA--ATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp EEEEESCBCCHHHHHHHH----HHCTTCCEEEEESCEEEEHHHHHHHH--HHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred eEEeeCcEEcHHHHHHHH----HhCCCCcEEeCCCcCCCCHHHHHHHH--HhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 367777777665332111 11568999999988 55543222221 24788999999988876544333 336
Q ss_pred CCCCCEEEccCCc--Cccc-CCcccCCCCCcCEEEccCC-cccccCCccccCCCCCcEEECcCcc---------------
Q 042476 76 WPHLQVLNLDDNY--FTGN-LPISIGTLSSLRSLHLRNN-RLAGIFPVSLKNCSSLISLDIGEND--------------- 136 (433)
Q Consensus 76 l~~L~~L~L~~n~--i~~~-~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~--------------- 136 (433)
+++|++|++++|. +... ++..+.++++|++|++++| .+. .++..+..+++|++|+++.+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 7789999998886 2211 2222345688888888887 333 255555666666666644331
Q ss_pred -----------c----cccCChhhhhcCCCccEEEeeCccccccC-CccccCCCCcCEEEccCCcCc-ccCCCCcccccc
Q 042476 137 -----------F----FGSIPTWVGERFPRLLILNLRSNKFNGSL-PVQLCHLTFLRILDVAHNNLS-GTIPRCINNFTA 199 (433)
Q Consensus 137 -----------~----~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~ 199 (433)
+ .+.++..+. .+++|++|++++|.+.... ...+..+++|++|++++| +. ..++.....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccchhhHHHHHH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 0 012222222 5678888888888765332 223557788888888877 32 122222334677
Q ss_pred cccccccccc-------ccccc-----ccc-CCceeeecce--eeeccceeehhhhccceeEEEcc--c----Cccccc-
Q 042476 200 MATINSSNQK-------NAIYY-----FVT-RGNIVFEDAS--VVTKGLLVEYNSILNLVRSIDIS--K----NNFSGE- 257 (433)
Q Consensus 200 L~~L~l~~~~-------~~~~~-----~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~L~L~--~----n~~~~~- 257 (433)
|+.|++..+. ..+.. ... .......... .............+++|+.|+++ + +.++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 7777663210 00000 000 0000000000 00011111222347788888888 3 344421
Q ss_pred ----CCccccCCccCceEeCcCcccccCCCcccCC-CCCCCEEeCcCCcCCCCCCccc-cCCCCCCeeeCcCCcCcccCC
Q 042476 258 ----IPMQLTNLEGLQTLNLSHNFFVGKIPENIGN-MRSIESLDFSTNRLFGRIPQSM-SSLSFLNHLNLSENDLSGQIP 331 (433)
Q Consensus 258 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p 331 (433)
++..+..+++|+.|+|++ .+++..+..++. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++...
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 112255678888888877 665555555544 7889999999998866544433 668889999999998854322
Q ss_pred --CCcccCccCcccccCCcC
Q 042476 332 --SSTQLQSFGASCFSGNDL 349 (433)
Q Consensus 332 --~~~~~~~l~~~~~~~n~l 349 (433)
....++.++.+++++|.+
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhCCCCCEEeeeCCCC
Confidence 123467788888888865
No 106
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=9.9e-22 Score=198.76 Aligned_cols=301 Identities=15% Similarity=0.079 Sum_probs=161.4
Q ss_pred CCCccEEEccCCcccccCCccccCC-CCCCCccEEEcCCCc--CcC-cCCcccCCCCCCCEEEccCCcCcccCCcccCCC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNG-DNKSVIISLKLSKNY--FSG-DIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTL 100 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~L~~n~--l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l 100 (433)
+++|++|++++|.+++..+..+... ..+++|++|++++|. +.. .++..+.++++|++|++++|.....++..+..+
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 5578888888877776555444332 356777888877775 211 111222345777777777762222244445555
Q ss_pred CCcCEEEccCCc--------------------------cc----ccCCccccCCCCCcEEECcCccccccCChhhhhcCC
Q 042476 101 SSLRSLHLRNNR--------------------------LA----GIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP 150 (433)
Q Consensus 101 ~~L~~L~L~~n~--------------------------l~----~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 150 (433)
++|+.|+++.+. +. ..++..+..+++|++|++++|.+.+.....+...++
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 555555543321 00 112222335567777777777654333333334566
Q ss_pred CccEEEeeCcccccc-CCccccCCCCcCEEEccC---------CcCcccCCCCc-cccccccccccccccccccc--ccc
Q 042476 151 RLLILNLRSNKFNGS-LPVQLCHLTFLRILDVAH---------NNLSGTIPRCI-NNFTAMATINSSNQKNAIYY--FVT 217 (433)
Q Consensus 151 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~---------n~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~--~~~ 217 (433)
+|++|++++| +... ++.....+++|++|++.+ +.+++.....+ ..+++|+.|.+..+...... ...
T Consensus 315 ~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 315 KLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred CcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence 7777777666 2211 111222355666666622 22221111111 12444444432222110000 000
Q ss_pred --CCceeeecce--------eee----ccceeehhhhccceeEEEcccCcccccCCccccC-CccCceEeCcCcccccCC
Q 042476 218 --RGNIVFEDAS--------VVT----KGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTN-LEGLQTLNLSHNFFVGKI 282 (433)
Q Consensus 218 --~~~~~~~~~~--------~~~----~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~ 282 (433)
........+. ... ..........+++|+.|++++ .++...+..+.. +++|+.|+|++|.+++..
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 0000000000 000 011222355678999999987 565444444444 789999999999987665
Q ss_pred Cccc-CCCCCCCEEeCcCCcCCCCCCc-cccCCCCCCeeeCcCCcCc
Q 042476 283 PENI-GNMRSIESLDFSTNRLFGRIPQ-SMSSLSFLNHLNLSENDLS 327 (433)
Q Consensus 283 ~~~l-~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~ 327 (433)
+..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 5554 5689999999999999654333 4556899999999999884
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.6e-19 Score=179.63 Aligned_cols=192 Identities=24% Similarity=0.306 Sum_probs=133.2
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
.+..+.+..+.+.+..+. ..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..| +..+++|+.|
T Consensus 22 ~l~~l~l~~~~i~~~~~~-----~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ-----NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHTTCSCTTSEECH-----HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHhccCCCcccccch-----hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 455556666666654432 2367888888888887743 3 47778888888888888875443 7788888888
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcC
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 186 (433)
+|++|.+.+ ++ .+..+++|++|+|++|.+. .++ .+. .+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence 888888874 33 5777888888888888874 333 333 678888888888887753 5677778888888888777
Q ss_pred cccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCc
Q 042476 187 SGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLE 266 (433)
Q Consensus 187 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~ 266 (433)
.+..| +.. +++|+.|+|++|.+++. ..+..++
T Consensus 166 ~~~~~--l~~--------------------------------------------l~~L~~L~Ls~N~i~~l--~~l~~l~ 197 (605)
T 1m9s_A 166 SDIVP--LAG--------------------------------------------LTKLQNLYLSKNHISDL--RALAGLK 197 (605)
T ss_dssp CCCGG--GTT--------------------------------------------CTTCCEEECCSSCCCBC--GGGTTCT
T ss_pred CCchh--hcc--------------------------------------------CCCCCEEECcCCCCCCC--hHHccCC
Confidence 64332 222 34467777777777643 3567778
Q ss_pred cCceEeCcCcccccCC
Q 042476 267 GLQTLNLSHNFFVGKI 282 (433)
Q Consensus 267 ~L~~L~Ls~n~l~~~~ 282 (433)
+|+.|+|++|.+.+..
T Consensus 198 ~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 198 NLDVLELFSQECLNKP 213 (605)
T ss_dssp TCSEEECCSEEEECCC
T ss_pred CCCEEEccCCcCcCCc
Confidence 8888888888776543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.2e-18 Score=164.81 Aligned_cols=178 Identities=24% Similarity=0.213 Sum_probs=99.1
Q ss_pred CEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCcccc-CCCCCcEEECcCccccccCChhhhhcCCCccEEEee
Q 042476 80 QVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLK-NCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLR 158 (433)
Q Consensus 80 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 158 (433)
+.++++++.+. .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+. .++...+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 46667666666 4554442 3466666666666655555554 5666666666666553 3333323345555555555
Q ss_pred CccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehh
Q 042476 159 SNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYN 238 (433)
Q Consensus 159 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (433)
+|.+....+..+..+++|+.|++++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~------------------------------------------------------- 121 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYN------------------------------------------------------- 121 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCS-------------------------------------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCC-------------------------------------------------------
Confidence 5555544344444444554444444
Q ss_pred hhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCccc---CCCCCCCEEeCcCCcCCCCCCccccCCCC
Q 042476 239 SILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI---GNMRSIESLDFSTNRLFGRIPQSMSSLSF 315 (433)
Q Consensus 239 ~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 315 (433)
|.+++..+..|..+++|+.|+|++|++++..+..+ ..+++|+.|+|++|+++...+..+..++.
T Consensus 122 -------------N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 188 (361)
T 2xot_A 122 -------------NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188 (361)
T ss_dssp -------------SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred -------------CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence 44444445555666666666666666664333333 45667777777777776544455555555
Q ss_pred --CCeeeCcCCcCccc
Q 042476 316 --LNHLNLSENDLSGQ 329 (433)
Q Consensus 316 --L~~L~L~~n~l~~~ 329 (433)
++.|++++|++.+.
T Consensus 189 ~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 189 WVKNGLYLHNNPLECD 204 (361)
T ss_dssp HHHTTEECCSSCEECC
T ss_pred hhcceEEecCCCccCC
Confidence 36677777777654
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=6.9e-19 Score=176.53 Aligned_cols=148 Identities=28% Similarity=0.337 Sum_probs=117.2
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+++|+.|++++|.+... + .+ ..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ +| .+..+++|+
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l---~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GI---QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TG---GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred CCCCCEEECcCCCCCCC-h-HH---ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 56788899999888753 2 23 458899999999998886544 7888899999999998884 33 688888999
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN 184 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 184 (433)
.|+|++|.+.+. ..+..+++|+.|+|++|.+.+ + ..+. .+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 999999988853 457888999999999998853 3 3333 78899999999998886544 888889999999998
Q ss_pred cCcc
Q 042476 185 NLSG 188 (433)
Q Consensus 185 ~~~~ 188 (433)
.+.+
T Consensus 186 ~i~~ 189 (605)
T 1m9s_A 186 HISD 189 (605)
T ss_dssp CCCB
T ss_pred CCCC
Confidence 8873
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.3e-18 Score=150.29 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=121.8
Q ss_pred CcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccc
Q 042476 127 LISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSS 206 (433)
Q Consensus 127 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 206 (433)
.+.++.+++.+ ..+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..
T Consensus 21 ~~~v~c~~~~l-~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRH-ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------- 86 (229)
T ss_dssp TTEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred CCEeEccCCCc-CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence 45566666666 4666544 367777777777777666777777888888888888776333333333
Q ss_pred cccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCccc
Q 042476 207 NQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENI 286 (433)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 286 (433)
+++|+.|+|++|.+++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus 87 ----------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 131 (229)
T 3e6j_A 87 ----------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131 (229)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred ----------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence 344777888888888666777888999999999999998 788888
Q ss_pred CCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccCCCC
Q 042476 287 GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQIPSS 333 (433)
Q Consensus 287 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~ 333 (433)
..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.++..
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 99999999999999998777778899999999999999999876633
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.8e-18 Score=158.49 Aligned_cols=58 Identities=21% Similarity=0.445 Sum_probs=32.5
Q ss_pred ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCC
Q 042476 243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFG 304 (433)
Q Consensus 243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 304 (433)
+|+.|++++|.+++..+ +..+++|+.|++++|++++ ++ .+..+++|+.|++++|+++.
T Consensus 157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 34555555555543322 5556666666666666653 22 25666666666666666653
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.5e-18 Score=158.94 Aligned_cols=80 Identities=21% Similarity=0.357 Sum_probs=54.0
Q ss_pred ceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476 243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS 322 (433)
Q Consensus 243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 322 (433)
+|+.|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|.+++ ++ .+..+++|+.|+++
T Consensus 135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (291)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECc
Confidence 355555555555533 345667777888888887775444 6777788888888887764 33 36777778888888
Q ss_pred CCcCcc
Q 042476 323 ENDLSG 328 (433)
Q Consensus 323 ~n~l~~ 328 (433)
+|+++.
T Consensus 209 ~n~i~~ 214 (291)
T 1h6t_A 209 SQECLN 214 (291)
T ss_dssp EEEEEC
T ss_pred CCcccC
Confidence 777764
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=9e-18 Score=144.71 Aligned_cols=152 Identities=14% Similarity=0.141 Sum_probs=113.6
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+++|++|++++|.++. ++ .+ ..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l---~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GI---EYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TG---GGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred cCCccEEeccCCCccC-hH-HH---hcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 5678888888888873 33 23 447888888888886652 34677888888888888888876777888888888
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHN 184 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 184 (433)
+|++++|.+++..+..+..+++|++|++++|...+.++ .+. .+++|++|++++|.+.. ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 88888888887677778888888888888887325565 333 68888888888888874 33 6777888888888888
Q ss_pred cCc
Q 042476 185 NLS 187 (433)
Q Consensus 185 ~~~ 187 (433)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 765
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.6e-20 Score=187.22 Aligned_cols=90 Identities=29% Similarity=0.360 Sum_probs=72.1
Q ss_pred ccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCC-CccccCCCCCCee
Q 042476 241 LNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRI-PQSMSSLSFLNHL 319 (433)
Q Consensus 241 ~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L 319 (433)
+++|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 344777888888887 677788888888888888888875 56 7888888888888888888776 8888888888888
Q ss_pred eCcCCcCcccCCCC
Q 042476 320 NLSENDLSGQIPSS 333 (433)
Q Consensus 320 ~L~~n~l~~~~p~~ 333 (433)
++++|++++.+|..
T Consensus 539 ~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 539 NLQGNSLCQEEGIQ 552 (567)
T ss_dssp ECTTSGGGGSSSCT
T ss_pred EecCCcCCCCccHH
Confidence 88888888766644
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-18 Score=156.93 Aligned_cols=123 Identities=24% Similarity=0.343 Sum_probs=53.2
Q ss_pred CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476 53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI 132 (433)
Q Consensus 53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 132 (433)
.+++.++++.+.+++.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 33444444444444221 2334444444455444444 222 34444445555555444443222 444444444554
Q ss_pred cCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476 133 GENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 133 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
++|.+. .++... . ++|++|++++|.+++. ..+..+++|+.|++++|+++
T Consensus 93 ~~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 93 NRNRLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CSSCCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred CCCccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence 444442 222211 1 4444555554444421 23444555555555555444
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.4e-17 Score=141.99 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=45.6
Q ss_pred eeEEEcccCcccccCCccccCCccCceEeCcCcc-cccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCc
Q 042476 244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF-FVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLS 322 (433)
Q Consensus 244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 322 (433)
|++|++++|.+++..+..+..+++|++|++++|+ ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|+.|+++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence 4445555555554444555566666666666665 43 344 45666667777777666654 22 45666667777777
Q ss_pred CCcCc
Q 042476 323 ENDLS 327 (433)
Q Consensus 323 ~n~l~ 327 (433)
+|++.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 66654
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.6e-20 Score=187.31 Aligned_cols=197 Identities=18% Similarity=0.183 Sum_probs=149.9
Q ss_pred CCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCc-------------ccccCCccccCCCCCcEEE-CcCccccc
Q 042476 74 MNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNR-------------LAGIFPVSLKNCSSLISLD-IGENDFFG 139 (433)
Q Consensus 74 ~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~~~~ 139 (433)
...++|+.|+|++|.+. .+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+ .
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-D 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-H
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-c
Confidence 45778888888888887 678888888888888887664 3455667777888888888 565543 1
Q ss_pred cCChhhh-----h--cCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccc
Q 042476 140 SIPTWVG-----E--RFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAI 212 (433)
Q Consensus 140 ~~~~~~~-----~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 212 (433)
.++.... . ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------- 484 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA---------------- 484 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG----------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc----------------
Confidence 2221100 0 12368889999998885 565 888889999999999887 66765544
Q ss_pred cccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCC-CcccCCCCC
Q 042476 213 YYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKI-PENIGNMRS 291 (433)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~ 291 (433)
+++|+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..++.+++
T Consensus 485 ----------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~ 534 (567)
T 1dce_A 485 ----------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR 534 (567)
T ss_dssp ----------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred ----------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence 4457889999999986 56 7899999999999999999776 999999999
Q ss_pred CCEEeCcCCcCCCCCCcc---ccCCCCCCeeeC
Q 042476 292 IESLDFSTNRLFGRIPQS---MSSLSFLNHLNL 321 (433)
Q Consensus 292 L~~L~Ls~n~l~~~~~~~---l~~l~~L~~L~L 321 (433)
|+.|++++|++++.+|.. +..+++|+.|++
T Consensus 535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999998765532 344788888864
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=2.7e-18 Score=176.38 Aligned_cols=165 Identities=21% Similarity=0.194 Sum_probs=101.8
Q ss_pred CCCccEEEccCCcccccCCccccCCCCC--CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNK--SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSS 102 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~ 102 (433)
.++++.|++..|.+... +..+.....+ ..+..+++..|.+. ..++.|..++.|+.|+|++|.+. .+|..+.++++
T Consensus 172 ~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 45688899988888763 2222110011 11222333334443 45778888999999999999988 67777778999
Q ss_pred cCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEcc
Q 042476 103 LRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVA 182 (433)
Q Consensus 103 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 182 (433)
|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..+. .+++|++|+|++|.+. .+|..+..+++|+.|+|+
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 999999999998 77888999999999999999985 7888876 7999999999999987 678889999999999999
Q ss_pred CCcCcccCCCCccc
Q 042476 183 HNNLSGTIPRCINN 196 (433)
Q Consensus 183 ~n~~~~~~p~~~~~ 196 (433)
+|.+++.+|..+..
T Consensus 325 ~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 325 GNPLEKQFLKILTE 338 (727)
T ss_dssp TSCCCSHHHHHHHH
T ss_pred CCccCCCChHHHhh
Confidence 99998777665543
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.5e-17 Score=150.05 Aligned_cols=80 Identities=18% Similarity=0.314 Sum_probs=51.6
Q ss_pred eeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcC
Q 042476 244 VRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE 323 (433)
Q Consensus 244 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 323 (433)
|+.|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 55566666665532 2356667777777777777643 2 466677777777777777654 4566677777777777
Q ss_pred CcCccc
Q 042476 324 NDLSGQ 329 (433)
Q Consensus 324 n~l~~~ 329 (433)
|++++.
T Consensus 182 N~~~~~ 187 (263)
T 1xeu_A 182 QKCVNE 187 (263)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 777654
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=5.6e-17 Score=139.01 Aligned_cols=91 Identities=19% Similarity=0.284 Sum_probs=64.7
Q ss_pred cceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476 242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL 321 (433)
Q Consensus 242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 321 (433)
++|++|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 34566666666666666666777777777777777777666666777777777777777777777777777777777777
Q ss_pred cCCcCcccCCC
Q 042476 322 SENDLSGQIPS 332 (433)
Q Consensus 322 ~~n~l~~~~p~ 332 (433)
++|+++|.++.
T Consensus 134 ~~N~l~c~c~l 144 (192)
T 1w8a_A 134 ASNPFNCNCHL 144 (192)
T ss_dssp TTCCBCCSGGG
T ss_pred CCCCccCcCcc
Confidence 77777766553
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=4.5e-17 Score=152.02 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=70.6
Q ss_pred CCCccEEEccCCccc--ccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCC--------CCCCCEEEccCCcCcccCC
Q 042476 25 PFEFGLLDLSNNALS--GSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMN--------WPHLQVLNLDDNYFTGNLP 94 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~i~~~~p 94 (433)
+++|++|||++|++. ...... ++.++.+.+..+. +.+.+|.+ +++|+.++|.+ .++...+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~------~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT------YPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED 117 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS------SGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT
T ss_pred hccCeEEecCcceeEEecCcccc------ccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhH
Confidence 567999999999987 222222 3334445555553 33456666 88888888888 7776667
Q ss_pred cccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcC
Q 042476 95 ISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGE 134 (433)
Q Consensus 95 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 134 (433)
.+|.++++|+.|++++|.+..+.+.+|..+.++..+....
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 7888888888888888888777778888877777776665
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=5.3e-17 Score=139.18 Aligned_cols=111 Identities=25% Similarity=0.346 Sum_probs=65.1
Q ss_pred CccEEEccCCcccccCCc-cccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCE
Q 042476 27 EFGLLDLSNNALSGSIIH-LICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRS 105 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~ 105 (433)
++++|++++|.+++..+. .+ ..+++|++|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLF---GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSG---GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred CCCEEECCCCcCCccCCcccc---ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 566666666666554432 23 23556666666666666555666666666666666666666555555666666666
Q ss_pred EEccCCcccccCCccccCCCCCcEEECcCcccccc
Q 042476 106 LHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGS 140 (433)
Q Consensus 106 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 140 (433)
|++++|.+++..|..+..+++|++|++++|.+...
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 66666666655555566666666666666655433
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=7.5e-18 Score=173.15 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=88.1
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCE-----EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCC
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQV-----LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSS 126 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-----L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 126 (433)
.+.++.|+|.+|.+... +..+.....|+. +++..|.+. ..+..|..+++|+.|+|++|.+. .+|..+..+++
T Consensus 172 ~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 46688899988887753 333322222222 333344444 45778889999999999999988 66767778999
Q ss_pred CcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccc
Q 042476 127 LISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSS 206 (433)
Q Consensus 127 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 206 (433)
|++|+|++|.+. .+|..+. .+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|+++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 999999999985 8888776 7999999999999998 77889999999999999999987 778777776665554444
Q ss_pred cc
Q 042476 207 NQ 208 (433)
Q Consensus 207 ~~ 208 (433)
.|
T Consensus 325 ~N 326 (727)
T 4b8c_D 325 GN 326 (727)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.1e-16 Score=132.43 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=71.8
Q ss_pred CCCccEEEcCCCcCc-CcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEE
Q 042476 52 KSVIISLKLSKNYFS-GDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISL 130 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 130 (433)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 345555555555554 44455555555555555555555533 445555556666666655554455555555566666
Q ss_pred ECcCccccccCCh-hhhhcCCCccEEEeeCccccccCC---ccccCCCCcCEEEccCCcCc
Q 042476 131 DIGENDFFGSIPT-WVGERFPRLLILNLRSNKFNGSLP---VQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 131 ~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~~ 187 (433)
++++|.+. .++. ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666552 2221 222245666666666666553332 25556666666666666554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.7e-16 Score=131.75 Aligned_cols=137 Identities=25% Similarity=0.231 Sum_probs=117.8
Q ss_pred CCCccEEEccCCccc-ccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476 25 PFEFGLLDLSNNALS-GSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L 103 (433)
+++|++|++++|.++ +.+|..+ ..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.++++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~---~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLT---AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCC---GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cccCCEEECCCCCCChhhHHHHH---HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 568999999999998 6777766 4589999999999999866 788999999999999999997788888889999
Q ss_pred CEEEccCCcccccCC-ccccCCCCCcEEECcCccccccCCh---hhhhcCCCccEEEeeCccccccCCc
Q 042476 104 RSLHLRNNRLAGIFP-VSLKNCSSLISLDIGENDFFGSIPT---WVGERFPRLLILNLRSNKFNGSLPV 168 (433)
Q Consensus 104 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~ 168 (433)
++|++++|.+++..+ ..+..+++|++|++++|.+. .++. ..+..+++|++|++++|.+. ..|+
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 999999999986432 67899999999999999995 5555 44558999999999999887 4444
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.7e-16 Score=128.08 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=54.1
Q ss_pred CCccEEEcCCCcCc-CcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 53 SVIISLKLSKNYFS-GDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 53 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
++++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 33444444444444444444444432 3344444444444444444443444444444444444
Q ss_pred CcCcccccc-CChhhhhcCCCccEEEeeCccccccCC---ccccCCCCcCEEEc
Q 042476 132 IGENDFFGS-IPTWVGERFPRLLILNLRSNKFNGSLP---VQLCHLTFLRILDV 181 (433)
Q Consensus 132 L~~n~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l 181 (433)
+++|.+.+. .+..+. .+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 444444221 112222 34444444444444443222 23444444444444
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.1e-15 Score=129.17 Aligned_cols=127 Identities=25% Similarity=0.309 Sum_probs=96.1
Q ss_pred cEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEc
Q 042476 29 GLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHL 108 (433)
Q Consensus 29 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L 108 (433)
+++++++|.++. +|..+ .+++++|++++|.++ .+|..|.++++|++|+|++|.+++..+.+|.++++|++|++
T Consensus 13 ~~l~~~~~~l~~-ip~~~-----~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI-----PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSS-CCSCC-----CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCc-CCCCC-----CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 567778877763 44444 457788888888877 56677778888888888888888766677888888888888
Q ss_pred cCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCcccc
Q 042476 109 RNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFN 163 (433)
Q Consensus 109 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 163 (433)
++|.+++..+..|..+++|++|++++|.+ ..++...+..+++|+.|++++|.+.
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCee
Confidence 88888877777788888888888888887 4666665557788888888888765
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=5.7e-16 Score=127.00 Aligned_cols=129 Identities=22% Similarity=0.226 Sum_probs=111.1
Q ss_pred CCCccEEEccCCccc-ccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476 25 PFEFGLLDLSNNALS-GSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L 103 (433)
.++++.|++++|.++ +.+|..+ ..+++|++|++++|.+++. ..+.++++|++|++++|.+.+.+|..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLT---DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCC---TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHH---hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 468999999999998 6777766 5589999999999999876 778999999999999999997788888889999
Q ss_pred CEEEccCCccccc-CCccccCCCCCcEEECcCccccccCCh---hhhhcCCCccEEEeeC
Q 042476 104 RSLHLRNNRLAGI-FPVSLKNCSSLISLDIGENDFFGSIPT---WVGERFPRLLILNLRS 159 (433)
Q Consensus 104 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~L~~ 159 (433)
++|++++|.+++. .+..+..+++|++|++++|.+. .++. ..+..+++|+.|++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCCC
Confidence 9999999999864 3477899999999999999995 4554 4455899999998763
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=128.74 Aligned_cols=127 Identities=24% Similarity=0.296 Sum_probs=89.5
Q ss_pred cEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCc
Q 042476 56 ISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGEN 135 (433)
Q Consensus 56 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 135 (433)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777776 4454432 46777777777777 56677777777777777777777766677777777777777777
Q ss_pred cccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCc
Q 042476 136 DFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 774 444444446777777777777777555556777777777777777765
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=4.9e-15 Score=125.17 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEEC
Q 042476 53 SVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDI 132 (433)
Q Consensus 53 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 132 (433)
++|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34444444444444433344444444444444444444333333444444444444444444333333444444444444
Q ss_pred cCccc
Q 042476 133 GENDF 137 (433)
Q Consensus 133 ~~n~~ 137 (433)
++|.+
T Consensus 108 ~~N~l 112 (177)
T 2o6r_A 108 DTNQL 112 (177)
T ss_dssp CSSCC
T ss_pred cCCcc
Confidence 44444
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=5.8e-14 Score=133.93 Aligned_cols=244 Identities=7% Similarity=0.000 Sum_probs=113.4
Q ss_pred CccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECc
Q 042476 54 VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIG 133 (433)
Q Consensus 54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 133 (433)
+|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+....+.+|.++++|+.+++++|.+..+...+|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4566665544 444445555553 466666654 44434445566666666666666655544444444 4566666665
Q ss_pred CccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccccc
Q 042476 134 ENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIY 213 (433)
Q Consensus 134 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 213 (433)
.+ + ..++...+.++++|+.+++..+ +......+|.+ .+|+.+.+. +.+...-..+|..|++|+.+.+..+.....
T Consensus 212 ~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-L-KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-C-CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-h-heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 33 2 3455555555666666666543 33233344544 456666653 223323334444444444333322110000
Q ss_pred ccccCCceeeecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCC
Q 042476 214 YFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE 293 (433)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 293 (433)
.........+..+.+|+.+++.+ .++......|.+|.+|+.+.|..+ ++.....+|.++ +|+
T Consensus 287 ---------------~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 287 ---------------PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK 348 (401)
T ss_dssp ---------------TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred ---------------cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence 00000011122233444444442 233333445555555555555333 433344455555 555
Q ss_pred EEeCcCCcCCCCCCccccCCC-CCCeeeCcCC
Q 042476 294 SLDFSTNRLFGRIPQSMSSLS-FLNHLNLSEN 324 (433)
Q Consensus 294 ~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n 324 (433)
.+++++|.+....+..|..++ .++.+.+..+
T Consensus 349 ~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 349 EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 555555555444444444442 4445554444
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=5.6e-15 Score=124.79 Aligned_cols=130 Identities=20% Similarity=0.228 Sum_probs=109.8
Q ss_pred EEeecccCcccCCCCCCCCCCCCCCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCE
Q 042476 2 LNLSNNQIYGVIPYFDHRPLPYQPFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQV 81 (433)
Q Consensus 2 L~ls~n~l~~~~~~~~~~~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 81 (433)
+++++|.++. +|.. + .++|++|++++|++++..+..+ ..+++|++|++++|.+++..+..|.++++|++
T Consensus 12 l~~~~~~l~~-~p~~----~---~~~l~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 12 IRCNSKGLTS-VPTG----I---PSSATRLELESNKLQSLPHGVF---DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp EECCSSCCSS-CCTT----C---CTTCSEEECCSSCCCCCCTTTT---TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EEecCCCCcc-CCCC----C---CCCCcEEEeCCCcccEeCHHHh---cCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 6777887773 3421 1 3589999999999997766666 55899999999999999877788899999999
Q ss_pred EEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCC
Q 042476 82 LNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIP 142 (433)
Q Consensus 82 L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 142 (433)
|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999997777778999999999999999997777778889999999999999865443
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.1e-14 Score=135.68 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=79.0
Q ss_pred hccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCC-EEeCcCCcCCCCCCccccCCCCCCe
Q 042476 240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIE-SLDFSTNRLFGRIPQSMSSLSFLNH 318 (433)
Q Consensus 240 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~ 318 (433)
.+++|+.+++++|.++...+..|.++.+|++|+|.+| ++...+.+|.++++|+ .+++.+ .++...+..|.+|++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 4788999999999999778888999999999999998 7767778899999999 999998 777677789999999999
Q ss_pred eeCcCCcCcccCC
Q 042476 319 LNLSENDLSGQIP 331 (433)
Q Consensus 319 L~L~~n~l~~~~p 331 (433)
+++++|.++...+
T Consensus 302 l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 302 VLATGDKITTLGD 314 (329)
T ss_dssp EEECSSCCCEECT
T ss_pred EEeCCCccCccch
Confidence 9999999885443
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=2.4e-13 Score=129.74 Aligned_cols=242 Identities=10% Similarity=0.091 Sum_probs=165.6
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
+..++.+.+.. .++.+...+|.++ +|+.+.+.++ +......+|.+ .+|+.+.+.+ .+..+.+.+|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 57788888875 4565677888886 7999999876 66667778988 4799999987 67777888999999999999
Q ss_pred CcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccCCcCcccCCCCcccccccccccccccccc
Q 042476 132 IGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNA 211 (433)
Q Consensus 132 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~ 211 (433)
+..|.+ ..++...+. ..+|+.+.+..+ +......+|.++++|+.+++..+ +...-..+|.+ .+|+.+.+...-
T Consensus 187 l~~n~l-~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i-- 259 (401)
T 4fdw_A 187 LSKTKI-TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGV-- 259 (401)
T ss_dssp CTTSCC-SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTC--
T ss_pred cCCCcc-eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCc--
Confidence 999988 578888884 799999999854 66566789999999999999875 44344455555 455555442211
Q ss_pred ccccccCCceeeecceeeeccceeehhhhccceeEEEcccCccc-----ccCCccccCCccCceEeCcCcccccCCCccc
Q 042476 212 IYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNNFS-----GEIPMQLTNLEGLQTLNLSHNFFVGKIPENI 286 (433)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 286 (433)
.......+..+++|+.+++.++.+. ...+..|.+|++|+.++|. +.++.....+|
T Consensus 260 -------------------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF 319 (401)
T 4fdw_A 260 -------------------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLL 319 (401)
T ss_dssp -------------------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTT
T ss_pred -------------------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhh
Confidence 1111223444566666666665543 2344556666666666666 33554445566
Q ss_pred CCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCc
Q 042476 287 GNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLS 327 (433)
Q Consensus 287 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 327 (433)
.++++|+.+.+.++ ++......|.++ +|+.+++.+|.+.
T Consensus 320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 66666666666444 444445566666 6666666666443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=1.6e-14 Score=121.77 Aligned_cols=129 Identities=17% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEE
Q 042476 52 KSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLD 131 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 131 (433)
+++|+.|++++|.++. ++......++|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 4444555555554442 232222222555555555555432 3444555555555555555543333334555555555
Q ss_pred CcCccccccCCh--hhhhcCCCccEEEeeCccccccCCc----cccCCCCcCEEEccCCcC
Q 042476 132 IGENDFFGSIPT--WVGERFPRLLILNLRSNKFNGSLPV----QLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 132 L~~n~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~~ 186 (433)
+++|.+ +.+|. .+. .+++|+.|++++|.+. ..|. .+..+++|+.||++.|..
T Consensus 95 L~~N~i-~~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSL-VELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCC-CCGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcC-CcchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555 33333 222 4555555555555554 2233 245555555555555544
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.8e-14 Score=121.59 Aligned_cols=131 Identities=20% Similarity=0.142 Sum_probs=109.6
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+++|++|++++|++++. +. +. ...++|+.|++++|.+++. ..|..+++|++|++++|.+++..+..|..+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~~--~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-LG--ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-GG--GGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCchh-HH-hh--hcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 67899999999999854 43 31 2245999999999999965 6789999999999999999965555668999999
Q ss_pred EEEccCCcccccCCc--cccCCCCCcEEECcCccccccCChh---hhhcCCCccEEEeeCcccc
Q 042476 105 SLHLRNNRLAGIFPV--SLKNCSSLISLDIGENDFFGSIPTW---VGERFPRLLILNLRSNKFN 163 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~L~~n~l~ 163 (433)
+|++++|.+.. +|. .+..+++|++|++++|.+. .+|.. ++..+++|+.|++++|...
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999974 554 7889999999999999994 66765 3448999999999999865
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.3e-13 Score=115.43 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=83.5
Q ss_pred cceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476 242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL 321 (433)
Q Consensus 242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 321 (433)
+.|++|++++|.+++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34889999999999888999999999999999999999777778899999999999999999877778999999999999
Q ss_pred cCCcCcccCCCC
Q 042476 322 SENDLSGQIPSS 333 (433)
Q Consensus 322 ~~n~l~~~~p~~ 333 (433)
++|++++.++..
T Consensus 110 ~~N~~~c~c~~l 121 (170)
T 3g39_A 110 LNNPWDCACSDI 121 (170)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCCCCCchhH
Confidence 999999876644
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=2e-13 Score=114.24 Aligned_cols=106 Identities=24% Similarity=0.204 Sum_probs=77.2
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEE
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSL 106 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L 106 (433)
+.+.+++++|.++. +|..+ .+++++|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~-----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI-----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCCcCc-cCccC-----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 35677778777764 44443 4677778888887777777777777778888888877776556667777777888
Q ss_pred EccCCcccccCCccccCCCCCcEEECcCcccc
Q 042476 107 HLRNNRLAGIFPVSLKNCSSLISLDIGENDFF 138 (433)
Q Consensus 107 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 138 (433)
++++|.+++..+..|..+++|++|++++|++.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88777777666666777777777777777663
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=4.1e-13 Score=112.74 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=82.0
Q ss_pred cceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeC
Q 042476 242 NLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNL 321 (433)
Q Consensus 242 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 321 (433)
+.|+.|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 34889999999999888999999999999999999999766677889999999999999998777777999999999999
Q ss_pred cCCcCcccCCCC
Q 042476 322 SENDLSGQIPSS 333 (433)
Q Consensus 322 ~~n~l~~~~p~~ 333 (433)
++|++.+.++..
T Consensus 113 ~~N~~~c~~~~~ 124 (174)
T 2r9u_A 113 YNNPWDCECRDI 124 (174)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCcccccccH
Confidence 999999866543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=5.3e-16 Score=133.65 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=78.1
Q ss_pred CccEEEccCCcccccCCc------cccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCC
Q 042476 27 EFGLLDLSNNALSGSIIH------LICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTL 100 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l 100 (433)
.++.++++.+.++|..|. .+ ..+++|++|++++|.+++ +| .+.++++|++|++++|.+. .+|..+..+
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~---~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATL---STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHH---HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHH---hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 455555566666555443 33 235566666666666654 34 5555666666666666665 445555555
Q ss_pred CCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCCh-hhhhcCCCccEEEeeCccccccCCc----------c
Q 042476 101 SSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPT-WVGERFPRLLILNLRSNKFNGSLPV----------Q 169 (433)
Q Consensus 101 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~ 169 (433)
++|++|++++|.+++ +| .+..+++|++|++++|.+. .++. .....+++|++|++++|.+.+..|. .
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 566666666666654 22 3555566666666666552 2222 1222456666666666655543332 1
Q ss_pred ccCCCCcCEEE
Q 042476 170 LCHLTFLRILD 180 (433)
Q Consensus 170 l~~l~~L~~L~ 180 (433)
+..+++|+.||
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 44555555554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=6.9e-13 Score=111.39 Aligned_cols=104 Identities=24% Similarity=0.219 Sum_probs=74.1
Q ss_pred ccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476 28 FGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH 107 (433)
Q Consensus 28 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 107 (433)
-+.+++++|.++ .+|..+ .++|++|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~-----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI-----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC-----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCCC-ccCCCc-----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 357777777775 345444 36777777777777777777777777777777777777755555567777777777
Q ss_pred ccCCcccccCCccccCCCCCcEEECcCccc
Q 042476 108 LRNNRLAGIFPVSLKNCSSLISLDIGENDF 137 (433)
Q Consensus 108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 137 (433)
+++|.+.+..+..|..+++|++|++++|++
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCc
Confidence 777777765555577777777777777776
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=8.1e-16 Score=132.50 Aligned_cols=147 Identities=20% Similarity=0.212 Sum_probs=121.5
Q ss_pred CCCccEEEcCCCcCcCcCCc------ccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccCCcccccCCccccCCC
Q 042476 52 KSVIISLKLSKNYFSGDIPD------CWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCS 125 (433)
Q Consensus 52 ~~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 125 (433)
...++.++++.+.+.+..|. .|..+++|++|++++|.+.+ +| .+.++++|++|++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 45666677777777766665 88999999999999999995 67 8889999999999999998 5677788889
Q ss_pred CCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCC-ccccCCCCcCEEEccCCcCcccCCCC----------c
Q 042476 126 SLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLP-VQLCHLTFLRILDVAHNNLSGTIPRC----------I 194 (433)
Q Consensus 126 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~----------~ 194 (433)
+|++|++++|.+. .+| .+. .+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..|.. +
T Consensus 94 ~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 94 TLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred cCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 9999999999995 455 444 78999999999999985322 47889999999999999998665543 6
Q ss_pred cccccccccc
Q 042476 195 NNFTAMATIN 204 (433)
Q Consensus 195 ~~l~~L~~L~ 204 (433)
..+++|+.|+
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 7788888876
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=7.2e-12 Score=119.71 Aligned_cols=83 Identities=8% Similarity=0.016 Sum_probs=52.6
Q ss_pred hhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCC
Q 042476 238 NSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLN 317 (433)
Q Consensus 238 ~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 317 (433)
+..+.+|+.+.+..+ ++.....+|.++.+|+++++..+ ++.....+|.++.+|+.+++..+ ++..-...|.+|.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 344566777776544 43344556777777777777543 55445566777777777777665 5444555677777777
Q ss_pred eeeCcC
Q 042476 318 HLNLSE 323 (433)
Q Consensus 318 ~L~L~~ 323 (433)
.+++..
T Consensus 370 ~i~lp~ 375 (394)
T 4fs7_A 370 KVELPK 375 (394)
T ss_dssp EEEEEG
T ss_pred EEEECC
Confidence 777654
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.29 E-value=7.2e-11 Score=112.74 Aligned_cols=282 Identities=10% Similarity=0.001 Sum_probs=155.9
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCC-----------------
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDN----------------- 87 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n----------------- 87 (433)
+.+|+.+.+..+ ++.....+| .++.+|+.+++..+ ++.+...+|.++..|+.+.+..+
T Consensus 70 c~~L~~i~lp~~-i~~I~~~aF---~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 70 CRKVTEIKIPST-VREIGEFAF---ENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp CTTEEEEECCTT-CCEECTTTT---TTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred CCCceEEEeCCC-ccCcchhHh---hCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 667888887643 554445555 45777888877644 44344556666665555444321
Q ss_pred ----cCcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccc-
Q 042476 88 ----YFTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKF- 162 (433)
Q Consensus 88 ----~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l- 162 (433)
........+|.++++|+.+.+.++. ..+...+|.++.+|+.+++..+ + ..+....+..+..|+.+.+..+..
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~-~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-L-KIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-C-CEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred ccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-c-eEeCchhhccccccceeecCCCceE
Confidence 0111223456777778877776553 3355566777777777777655 2 344444444455555544433221
Q ss_pred --------------------cccCCccccCCCCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCcee
Q 042476 163 --------------------NGSLPVQLCHLTFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIV 222 (433)
Q Consensus 163 --------------------~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 222 (433)
......++..+..++.+.+..+... .....+..+..++.............+.......
T Consensus 222 i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT 300 (394)
T ss_dssp ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecccccccccccc
Confidence 1112234455556666666544332 2333444444444432221110000000000000
Q ss_pred eecceeeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcC
Q 042476 223 FEDASVVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRL 302 (433)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 302 (433)
...+.......-...+..+.+|+.+++..+ ++..-..+|.+|.+|+++++..+ ++.....+|.++++|+.+++..+-
T Consensus 301 ~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~- 377 (394)
T 4fs7_A 301 EVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL- 377 (394)
T ss_dssp EEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-
T ss_pred ccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-
Confidence 000000011111234566888999999754 55566778999999999999876 665667889999999999998652
Q ss_pred CCCCCccccCCCCCCee
Q 042476 303 FGRIPQSMSSLSFLNHL 319 (433)
Q Consensus 303 ~~~~~~~l~~l~~L~~L 319 (433)
..+...|.++++|+.+
T Consensus 378 -~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 378 -EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp -GGGGGGBCTTCEEEEE
T ss_pred -EEhhheecCCCCCcEE
Confidence 2344578888888764
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=9.1e-14 Score=131.31 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=30.7
Q ss_pred cCCccCceEeCcCcccccC----CCcccCCCCCCCEEeCcCCcCCCC----CCccccCCCCCCeeeCcCCcCc
Q 042476 263 TNLEGLQTLNLSHNFFVGK----IPENIGNMRSIESLDFSTNRLFGR----IPQSMSSLSFLNHLNLSENDLS 327 (433)
Q Consensus 263 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 327 (433)
..+++|++|+|++|.+++. ++..+...++|+.|+|++|.++.. ++..+..+++|+.|+|++|+++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3344555555555554422 123334445555555555555432 2223334455555555555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=3.3e-13 Score=127.44 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=113.1
Q ss_pred CCCccEEEccCCcccccCCccccCC--CCCCCccEEEcCCCcCcCcCCccc-CCCCCCCEEEccCCcCcccCCccc----
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNG--DNKSVIISLKLSKNYFSGDIPDCW-MNWPHLQVLNLDDNYFTGNLPISI---- 97 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~p~~~---- 97 (433)
+++|++|++++|.+++.....+... ...++|++|+|++|.+.......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578899999998876544443221 224689999999998864322222 235678899999998875444343
Q ss_pred -CCCCCcCEEEccCCccccc----CCccccCCCCCcEEECcCcccccc----CChhhhhcCCCccEEEeeCcccccc---
Q 042476 98 -GTLSSLRSLHLRNNRLAGI----FPVSLKNCSSLISLDIGENDFFGS----IPTWVGERFPRLLILNLRSNKFNGS--- 165 (433)
Q Consensus 98 -~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~--- 165 (433)
...++|++|++++|.++.. ++..+..+++|++|+|++|.+.+. +...+. ..++|++|+|++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCHHHHH
Confidence 3567899999999988642 344457788899999999987432 122232 567899999999988742
Q ss_pred -CCccccCCCCcCEEEccCCcCccc
Q 042476 166 -LPVQLCHLTFLRILDVAHNNLSGT 189 (433)
Q Consensus 166 -~~~~l~~l~~L~~L~l~~n~~~~~ 189 (433)
+...+...++|++|++++|.+++.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHH
Confidence 334455678899999999988643
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=3.2e-11 Score=113.11 Aligned_cols=89 Identities=20% Similarity=0.170 Sum_probs=75.9
Q ss_pred cceeEEEccc-CcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeee
Q 042476 242 NLVRSIDISK-NNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLN 320 (433)
Q Consensus 242 ~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 320 (433)
.+|+.|+|++ |.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 3478888986 888877778899999999999999999988888899999999999999999877666776665 99999
Q ss_pred CcCCcCcccCC
Q 042476 321 LSENDLSGQIP 331 (433)
Q Consensus 321 L~~n~l~~~~p 331 (433)
|.+|++.+.+.
T Consensus 110 l~~N~~~c~c~ 120 (347)
T 2ifg_A 110 LSGNPLHCSCA 120 (347)
T ss_dssp CCSSCCCCCGG
T ss_pred eeCCCccCCCc
Confidence 99999987543
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=1.9e-09 Score=102.77 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=34.6
Q ss_pred hccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCee
Q 042476 240 ILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHL 319 (433)
Q Consensus 240 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 319 (433)
.+..|+.+.+..+... .....|.++.+|+.+.+. +.++.....+|.++.+|+.+++..+ ++..-...|.+|.+|+.+
T Consensus 263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 3444555555433221 223344445555555553 2233233344444555555555432 322233344455555555
Q ss_pred eCc
Q 042476 320 NLS 322 (433)
Q Consensus 320 ~L~ 322 (433)
.+.
T Consensus 340 ~ip 342 (394)
T 4gt6_A 340 AIP 342 (394)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=7.5e-11 Score=110.60 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=65.5
Q ss_pred EEEccCC-cccccCCccccCCCCCCCccEEEcCC-CcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEE
Q 042476 30 LLDLSNN-ALSGSIIHLICNGDNKSVIISLKLSK-NYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLH 107 (433)
Q Consensus 30 ~L~l~~n-~l~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~ 107 (433)
.++.+++ ++++ +|. + ..+++|+.|+|++ |.+++..+..|.++++|++|+|++|++++..|.+|.++++|++|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l---~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-L---PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTT-TTT-S---CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCc-cCC-C---CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 4566666 6654 444 4 3366677777764 666666666666777777777777777766666666777777777
Q ss_pred ccCCcccccCCccccCCCCCcEEECcCccc
Q 042476 108 LRNNRLAGIFPVSLKNCSSLISLDIGENDF 137 (433)
Q Consensus 108 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 137 (433)
|++|.+++..+..+..++ |+.|++.+|.+
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 777777655555555444 67777766665
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.11 E-value=4.7e-09 Score=100.08 Aligned_cols=267 Identities=8% Similarity=0.081 Sum_probs=172.8
Q ss_pred CccEEEccCCcccccCCccccCCCCCCCccEEEcCCCc---CcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCc
Q 042476 27 EFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNY---FSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSL 103 (433)
Q Consensus 27 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L 103 (433)
.|+.+.+..+ ++.....+| .++.+|+.+.+..+. ++.+-..+|.++.+|+.+.+..+ ++.....+|.++.+|
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF---~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAF---YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL 139 (394)
T ss_dssp CCCEEEECTT-CCEECTTTT---TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred cCEEEEECCC-eeEEhHHHh---hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence 4788887654 555555666 558888888887653 55556677888888888777554 443556678888888
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeCccccccCCccccCCCCcCEEEccC
Q 042476 104 RSLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRSNKFNGSLPVQLCHLTFLRILDVAH 183 (433)
Q Consensus 104 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 183 (433)
+.+.+..+ +..+....|..+..|+.+.+..+- ..+....+ ...+|+.+.+..+-.. ....++..+.++.......
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~--~~I~~~aF-~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSV--TAIEERAF-TGTALTQIHIPAKVTR-IGTNAFSECFALSTITSDS 214 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCTTC--CEECTTTT-TTCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECC
T ss_pred ccccccce-eeeecccceeccccccccccccee--eEeccccc-cccceeEEEECCcccc-cccchhhhccccceecccc
Confidence 88888754 344566677788888888887652 34555555 3456777776544322 2334455555555444322
Q ss_pred Cc------------------------------------CcccCCCCccccccccccccccccccccccccCCceeeecce
Q 042476 184 NN------------------------------------LSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDAS 227 (433)
Q Consensus 184 n~------------------------------------~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 227 (433)
+. +...-..+|..+..|+.+.+.....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~----------------- 277 (394)
T 4gt6_A 215 ESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV----------------- 277 (394)
T ss_dssp SSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-----------------
T ss_pred cccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-----------------
Confidence 11 1111223455666666665443210
Q ss_pred eeeccceeehhhhccceeEEEcccCcccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCC
Q 042476 228 VVTKGLLVEYNSILNLVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIP 307 (433)
Q Consensus 228 ~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 307 (433)
..-...+..+..|+.+.+.. .++......|.++.+|++++|..+ ++.....+|.++.+|+.+.+..+ ++..-.
T Consensus 278 ----~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 278 ----SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp ----EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ----eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 11122344577888888863 455456678899999999999764 65556678999999999999765 655556
Q ss_pred ccccCCCCCCeeeCcCCcCc
Q 042476 308 QSMSSLSFLNHLNLSENDLS 327 (433)
Q Consensus 308 ~~l~~l~~L~~L~L~~n~l~ 327 (433)
..|.+|.+|+.+++.++...
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHH
T ss_pred hHhhCCCCCCEEEECCceee
Confidence 78999999999999887543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=4.3e-10 Score=105.33 Aligned_cols=83 Identities=11% Similarity=0.236 Sum_probs=50.4
Q ss_pred ccceeEEEcccCcccccCCccc---cCCccCceEeCcCcccccCC----CcccCCCCCCCEEeCcCCcCCCCCCccccC-
Q 042476 241 LNLVRSIDISKNNFSGEIPMQL---TNLEGLQTLNLSHNFFVGKI----PENIGNMRSIESLDFSTNRLFGRIPQSMSS- 312 (433)
Q Consensus 241 ~~~L~~L~L~~n~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~- 312 (433)
+++|+.|++.+|.++...+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4567777777776653222111 24678888888888876542 333345678888888888776543333332
Q ss_pred CCCCCeeeCcCCc
Q 042476 313 LSFLNHLNLSEND 325 (433)
Q Consensus 313 l~~L~~L~L~~n~ 325 (433)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3457777766
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=5.9e-10 Score=104.38 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=46.7
Q ss_pred CCccCceEeCcCcccccCCCccc---CCCCCCCEEeCcCCcCCCC----CCccccCCCCCCeeeCcCCcCcc
Q 042476 264 NLEGLQTLNLSHNFFVGKIPENI---GNMRSIESLDFSTNRLFGR----IPQSMSSLSFLNHLNLSENDLSG 328 (433)
Q Consensus 264 ~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~ 328 (433)
.+++|+.|+|++|.+.+..+..+ ..+++|+.|+|+.|.+++. ++..+..+++|+.|++++|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 46889999998888764433222 3578899999998888653 33334567889999999887763
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.87 E-value=3.3e-07 Score=86.71 Aligned_cols=123 Identities=9% Similarity=0.017 Sum_probs=62.7
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
..+|+.+.+.. .++.....+| .++.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +......+|.+ .+|+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF---~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANF---NSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTT---TTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred ccCCEEEEeCC-CccChHHHHh---hCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 44566666643 2443444445 44677777777543 554555666665 4666665433 33334445554 3677
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCChhhhhcCCCccEEEeeC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFPRLLILNLRS 159 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 159 (433)
.+.+..+ +..+-..+|.++ +++...+..+- ..+....+..+.+++.+.+..
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~v--~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIPKSV--TTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEEECTTC--CEECSCTTTTCTTCCEEEECT
T ss_pred cccCCCc-cccccccccccc-eeeeeecccee--eccccchhccccccccccccc
Confidence 7777654 232333344443 44444444321 133333333556666655544
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.71 E-value=1.6e-06 Score=82.02 Aligned_cols=264 Identities=6% Similarity=-0.034 Sum_probs=162.0
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCCccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcC
Q 042476 25 PFEFGLLDLSNNALSGSIIHLICNGDNKSVIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLR 104 (433)
Q Consensus 25 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~ 104 (433)
+.+|+.+++..+ ++.....+| .++ +|+.+.+..+ ++.+...+|.+. +|+.+.+..+- ......+|.+. +|+
T Consensus 68 C~~L~~I~lp~~-v~~Ig~~aF---~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~-~~i~~~~F~~~-~l~ 138 (379)
T 4h09_A 68 CYNMTKVTVAST-VTSIGDGAF---ADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGAT-TEIGNYIFYNS-SVK 138 (379)
T ss_dssp CTTCCEEEECTT-CCEECTTTT---TTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTC-CEECTTTTTTC-CCC
T ss_pred CCCCCEEEeCCc-ceEechhhh---cCC-CCceEECCce-eeEeccceeccC-CcccccCCCcc-ccccccccccc-eee
Confidence 789999999754 655555555 333 6788777644 554556677664 79999997653 32445566554 677
Q ss_pred EEEccCCcccccCCccccCCCCCcEEECcCccccccCCh-----------hhhhcCCCccEEEeeCccccccCCccccCC
Q 042476 105 SLHLRNNRLAGIFPVSLKNCSSLISLDIGENDFFGSIPT-----------WVGERFPRLLILNLRSNKFNGSLPVQLCHL 173 (433)
Q Consensus 105 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 173 (433)
.+.+..+ ++.+....|..+..++...+..+........ ..+.....+..+.+....- ......+...
T Consensus 139 ~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~ 216 (379)
T 4h09_A 139 RIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYG 216 (379)
T ss_dssp EEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTC
T ss_pred eeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeecccccc
Confidence 7776654 4445666778888888877765432111000 0011233444444433221 1334456667
Q ss_pred CCcCEEEccCCcCcccCCCCccccccccccccccccccccccccCCceeeecceeeeccceeehhhhccceeEEEcccCc
Q 042476 174 TFLRILDVAHNNLSGTIPRCINNFTAMATINSSNQKNAIYYFVTRGNIVFEDASVVTKGLLVEYNSILNLVRSIDISKNN 253 (433)
Q Consensus 174 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 253 (433)
.+|+.+.+..+ +......++..+..|+.+.+..+-. ..-...+..+..|+.+.+..+
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~---------------------~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVT---------------------SIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCC---------------------EECTTTTTTCTTCCEEEECCC-
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCCcc---------------------EeCccccceeehhcccccccc-
Confidence 77777777544 2223444566666666655433210 001122344566777777544
Q ss_pred ccccCCccccCCccCceEeCcCcccccCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcC
Q 042476 254 FSGEIPMQLTNLEGLQTLNLSHNFFVGKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSE 323 (433)
Q Consensus 254 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 323 (433)
+.......|.++.+|+++.+.++.++.....+|.++.+|+.+++.++ ++..-...|.+|.+|+.+.+..
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 44345567888999999999888887666778889999999999765 5545556788999999887753
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=8.2e-09 Score=87.22 Aligned_cols=114 Identities=15% Similarity=0.177 Sum_probs=68.2
Q ss_pred CCCCCccEEEcCCC-cCcCc----CCcccCCCCCCCEEEccCCcCccc----CCcccCCCCCcCEEEccCCccccc----
Q 042476 50 DNKSVIISLKLSKN-YFSGD----IPDCWMNWPHLQVLNLDDNYFTGN----LPISIGTLSSLRSLHLRNNRLAGI---- 116 (433)
Q Consensus 50 ~~~~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~---- 116 (433)
...+.|++|+|++| .+... +...+...+.|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 33566777777776 65521 334445566777777777776532 233444556777777777776632
Q ss_pred CCccccCCCCCcEEEC--cCccccccCChhhh---hcCCCccEEEeeCcccc
Q 042476 117 FPVSLKNCSSLISLDI--GENDFFGSIPTWVG---ERFPRLLILNLRSNKFN 163 (433)
Q Consensus 117 ~~~~~~~l~~L~~L~L--~~n~~~~~~~~~~~---~~l~~L~~L~L~~n~l~ 163 (433)
+...+...+.|++|++ ++|.+...-...+. ...++|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566677777777 66766432211111 24567788888777764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=9.4e-08 Score=80.66 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=79.3
Q ss_pred CCcccCCCCCCCEEEccCC-cCccc----CCcccCCCCCcCEEEccCCccccc----CCccccCCCCCcEEECcCccccc
Q 042476 69 IPDCWMNWPHLQVLNLDDN-YFTGN----LPISIGTLSSLRSLHLRNNRLAGI----FPVSLKNCSSLISLDIGENDFFG 139 (433)
Q Consensus 69 ~~~~~~~l~~L~~L~L~~n-~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~ 139 (433)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3345566788888888888 77632 345566677888888888887642 33445566788888888888743
Q ss_pred c----CChhhhhcCCCccEEEe--eCcccccc----CCccccCCCCcCEEEccCCcCc
Q 042476 140 S----IPTWVGERFPRLLILNL--RSNKFNGS----LPVQLCHLTFLRILDVAHNNLS 187 (433)
Q Consensus 140 ~----~~~~~~~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~ 187 (433)
. +...+. ..++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3 222222 4567888888 77877633 3345556678888888888775
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=9.9e-07 Score=78.31 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=43.3
Q ss_pred CCCCCcCEEEccCCcccc--cCCccccCCCCCcEEECcCccccccCChhhhhcCC--CccEEEeeCccccccCCc-----
Q 042476 98 GTLSSLRSLHLRNNRLAG--IFPVSLKNCSSLISLDIGENDFFGSIPTWVGERFP--RLLILNLRSNKFNGSLPV----- 168 (433)
Q Consensus 98 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~----- 168 (433)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+.+. ..+. .+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~-~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD-KIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG-GGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh-hcccCCcceEEccCCcCccccCcchhHH
Confidence 345666666666666664 2334455666666666666666322 1111 222 666666666666544431
Q ss_pred --cccCCCCcCEEE
Q 042476 169 --QLCHLTFLRILD 180 (433)
Q Consensus 169 --~l~~l~~L~~L~ 180 (433)
.+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 245566666664
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=7.1e-07 Score=79.27 Aligned_cols=81 Identities=28% Similarity=0.400 Sum_probs=60.4
Q ss_pred CCCCCCCEEEccCCcCcc--cCCcccCCCCCcCEEEccCCcccccCCccccCCC--CCcEEECcCccccccCCh------
Q 042476 74 MNWPHLQVLNLDDNYFTG--NLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCS--SLISLDIGENDFFGSIPT------ 143 (433)
Q Consensus 74 ~~l~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~------ 143 (433)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 467888999999998886 3456667888999999999988865 2344444 889999999988765552
Q ss_pred hhhhcCCCccEEE
Q 042476 144 WVGERFPRLLILN 156 (433)
Q Consensus 144 ~~~~~l~~L~~L~ 156 (433)
.+...+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3345788998886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=4.9e-07 Score=74.56 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=67.3
Q ss_pred ceeEEEcccCcccccCCccccCCccCceEeCcCcc-cccCCCcccCCC----CCCCEEeCcCCc-CCCCCCccccCCCCC
Q 042476 243 LVRSIDISKNNFSGEIPMQLTNLEGLQTLNLSHNF-FVGKIPENIGNM----RSIESLDFSTNR-LFGRIPQSMSSLSFL 316 (433)
Q Consensus 243 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~L 316 (433)
.|+.||+++|.++..--..+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. +|..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 59999999999886656667899999999999995 776655556654 479999999985 776544556789999
Q ss_pred CeeeCcCCc
Q 042476 317 NHLNLSEND 325 (433)
Q Consensus 317 ~~L~L~~n~ 325 (433)
+.|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=5.5e-06 Score=68.23 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=6.5
Q ss_pred cCCCCcCEEEccCC
Q 042476 171 CHLTFLRILDVAHN 184 (433)
Q Consensus 171 ~~l~~L~~L~l~~n 184 (433)
.++++|++|++++|
T Consensus 136 ~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 136 HHFRNLKYLFLSDL 149 (176)
T ss_dssp GGCTTCCEEEEESC
T ss_pred hcCCCCCEEECCCC
Confidence 34444444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.54 E-value=1.6e-05 Score=66.80 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=54.0
Q ss_pred CCCccEEEcCCC-cCcC----cCCcccCCCCCCCEEEccCCcCccc----CCcccCCCCCcCEEEccCCccccc----CC
Q 042476 52 KSVIISLKLSKN-YFSG----DIPDCWMNWPHLQVLNLDDNYFTGN----LPISIGTLSSLRSLHLRNNRLAGI----FP 118 (433)
Q Consensus 52 ~~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~ 118 (433)
-+.|++|+|+++ .|.. .+.+++..-..|+.|+|++|.+... +.+++..-+.|++|+|++|.|... +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 455666666653 4432 1233344445666666666666532 223334445666666666666532 22
Q ss_pred ccccCCCCCcEEECcCc---ccccc----CChhhhhcCCCccEEEeeCccc
Q 042476 119 VSLKNCSSLISLDIGEN---DFFGS----IPTWVGERFPRLLILNLRSNKF 162 (433)
Q Consensus 119 ~~~~~l~~L~~L~L~~n---~~~~~----~~~~~~~~l~~L~~L~L~~n~l 162 (433)
.++..-+.|++|+|+++ .+... +...+ ..-+.|+.|+++.+..
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL-~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHH-HhCCCcCeEeccCCCc
Confidence 33444555666666543 22111 11111 2345666666665543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.26 E-value=0.00066 Score=53.07 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=41.9
Q ss_pred eEeCcCcccc-cCCCcccCCCCCCCEEeCcCCcCCCCCCccccCCCCCCeeeCcCCcCcccC
Q 042476 270 TLNLSHNFFV-GKIPENIGNMRSIESLDFSTNRLFGRIPQSMSSLSFLNHLNLSENDLSGQI 330 (433)
Q Consensus 270 ~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 330 (433)
.++-+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 5666777664 34554432 46888888888887766677788888888888888887643
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.99 E-value=0.00032 Score=58.86 Aligned_cols=115 Identities=9% Similarity=0.100 Sum_probs=75.5
Q ss_pred ccCCCCCCCEEEccCC-cCccc----CCcccCCCCCcCEEEccCCccccc----CCccccCCCCCcEEECcCccccccCC
Q 042476 72 CWMNWPHLQVLNLDDN-YFTGN----LPISIGTLSSLRSLHLRNNRLAGI----FPVSLKNCSSLISLDIGENDFFGSIP 142 (433)
Q Consensus 72 ~~~~l~~L~~L~L~~n-~i~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~ 142 (433)
.+.+-+.|++|+|++| .+... +.+++..-+.|+.|+|++|.+... +...+..-+.|++|+|++|.+...--
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445678999999885 76532 445677778899999999988743 33445567889999999998854333
Q ss_pred hhhhh---cCCCccEEEeeCcc---ccc----cCCccccCCCCcCEEEccCCcC
Q 042476 143 TWVGE---RFPRLLILNLRSNK---FNG----SLPVQLCHLTFLRILDVAHNNL 186 (433)
Q Consensus 143 ~~~~~---~l~~L~~L~L~~n~---l~~----~~~~~l~~l~~L~~L~l~~n~~ 186 (433)
..+.+ .-+.|++|+|+++. +.. .+...+..-+.|+.|+++.|.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33332 23468888887653 231 1334555667788888876654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0023 Score=49.94 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=17.1
Q ss_pred CccEEEcCCCcCcCcCCcccCCCCCCCEEEccCCcC
Q 042476 54 VIISLKLSKNYFSGDIPDCWMNWPHLQVLNLDDNYF 89 (433)
Q Consensus 54 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 89 (433)
++++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 444455555554444444444444444444444444
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=90.85 E-value=0.088 Score=31.66 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=14.3
Q ss_pred hhhhhhhhhhhhHhhhhheecccccch
Q 042476 387 ASMALGFVVGFWCFIGPLLVNRRWRYK 413 (433)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (433)
.+++.|++++++++++.++++||++.+
T Consensus 15 ~gVVgGv~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred eehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence 333444555555555556666666544
No 166
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=90.57 E-value=0.059 Score=32.27 Aligned_cols=29 Identities=14% Similarity=0.011 Sum_probs=17.1
Q ss_pred hhhhhhhhhhhhhhHhhhhheecccccch
Q 042476 385 LYASMALGFVVGFWCFIGPLLVNRRWRYK 413 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (433)
.+.+.++|+++++++.++.++|.||++++
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 45666666555555555556666666554
No 167
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=90.47 E-value=0.094 Score=31.45 Aligned_cols=28 Identities=18% Similarity=0.014 Sum_probs=15.1
Q ss_pred hhhhhhhhhhhhHhhhhheecccccchh
Q 042476 387 ASMALGFVVGFWCFIGPLLVNRRWRYKY 414 (433)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (433)
.+++.|++++++++.+.++++||++++-
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred EeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3334445555555555566667665543
No 168
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=88.27 E-value=0.24 Score=28.72 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=12.5
Q ss_pred hhhhhhhhhhhhhhHhhhhhe
Q 042476 385 LYASMALGFVVGFWCFIGPLL 405 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~ 405 (433)
.+.++++|+++++.++++..+
T Consensus 12 aIAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHHHH
Confidence 567777777666555444433
No 169
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=82.60 E-value=0.4 Score=27.04 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhhhHhhhhheecccc
Q 042476 386 YASMALGFVVGFWCFIGPLLVNRRW 410 (433)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (433)
+.+.++|+++++++..++.+|+||+
T Consensus 10 IaagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 10 IIATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred eHHHHHHHHHHHHHHHHhheEEeec
Confidence 3444555444444445555566654
No 170
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=81.62 E-value=0.34 Score=26.71 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=17.6
Q ss_pred hhhhhhhhhhhhHhhhhheeccccc
Q 042476 387 ASMALGFVVGFWCFIGPLLVNRRWR 411 (433)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (433)
+.+++|.++++.++.+.++|||-+|
T Consensus 10 lt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEcccc
Confidence 3456677777777777888887765
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.85 E-value=12 Score=26.92 Aligned_cols=45 Identities=11% Similarity=0.035 Sum_probs=24.4
Q ss_pred CcCcCCcccCCCCCCCEEEccCCcCcccCCcccCCCCCcCEEEccC
Q 042476 65 FSGDIPDCWMNWPHLQVLNLDDNYFTGNLPISIGTLSSLRSLHLRN 110 (433)
Q Consensus 65 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L~~ 110 (433)
++.+-..+|.++.+|+.+.|-.+ ++.....+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444555666666666666443 3334445566666666666554
No 172
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=68.96 E-value=2.4 Score=24.89 Aligned_cols=6 Identities=33% Similarity=0.982 Sum_probs=2.4
Q ss_pred heeccc
Q 042476 404 LLVNRR 409 (433)
Q Consensus 404 ~~~~~~ 409 (433)
++++||
T Consensus 34 ~~~~rR 39 (41)
T 2k9y_A 34 FFIHRR 39 (41)
T ss_dssp HSSSSS
T ss_pred eeEeee
Confidence 344443
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.09 E-value=10 Score=27.35 Aligned_cols=45 Identities=13% Similarity=0.230 Sum_probs=26.8
Q ss_pred CcccCCcccCCCCCcCEEEccCCcccccCCccccCCCCCcEEECcC
Q 042476 89 FTGNLPISIGTLSSLRSLHLRNNRLAGIFPVSLKNCSSLISLDIGE 134 (433)
Q Consensus 89 i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 134 (433)
++.+...+|.++.+|+.+.+..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34344456666677777766654 3445555666666666666654
No 174
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=50.04 E-value=6.7 Score=21.80 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhhhhHhhhhheecc
Q 042476 385 LYASMALGFVVGFWCFIGPLLVNR 408 (433)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~ 408 (433)
.+.+++++-+++.+++...++++.
T Consensus 8 aIaGIVvgdi~~t~~i~~~vy~~~ 31 (33)
T 2l34_A 8 VLAGIVVGDLVLTVLIALAVYFLG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEeEeHHHHHHHHHHHHHHhhee
Confidence 456666666555554444444433
No 175
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=34.62 E-value=10 Score=24.64 Aligned_cols=15 Identities=47% Similarity=0.738 Sum_probs=6.4
Q ss_pred hhhhhhhhhhHhhhh
Q 042476 389 MALGFVVGFWCFIGP 403 (433)
Q Consensus 389 ~~~~~~~~~~~~~~~ 403 (433)
+++|.++++++.++.
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 344444444444433
No 176
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=40.73 E-value=8.3 Score=22.09 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.3
Q ss_pred cccchh
Q 042476 409 RWRYKY 414 (433)
Q Consensus 409 ~~~~~~ 414 (433)
+.+.||
T Consensus 33 ~qKPrY 38 (39)
T 2l6w_A 33 QKKPRY 38 (39)
Confidence 333333
No 177
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=34.76 E-value=12 Score=21.99 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=9.1
Q ss_pred hhhh-hhhhhhhhhHhhhhhee
Q 042476 386 YASM-ALGFVVGFWCFIGPLLV 406 (433)
Q Consensus 386 ~~~~-~~~~~~~~~~~~~~~~~ 406 (433)
++++ ++|++++.++++.+++.
T Consensus 19 ~iGL~v~gVai~~vIVvsl~ml 40 (43)
T 2llm_A 19 IIGLMVGGVVIATVIVITLVML 40 (43)
Confidence 3444 34444444444444443
Done!