Query 042477
Match_columns 478
No_of_seqs 167 out of 1580
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 11:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 7.2E-29 2.5E-33 258.7 28.2 406 2-470 22-448 (491)
2 2xut_A Proton/peptide symporte 100.0 2.5E-29 8.5E-34 264.5 20.7 407 2-470 21-467 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 3.9E-24 1.3E-28 219.7 23.2 360 10-472 45-411 (451)
4 3o7q_A L-fucose-proton symport 99.9 8.9E-23 3.1E-27 208.9 30.5 335 13-472 45-409 (438)
5 2gfp_A EMRD, multidrug resista 99.9 3.1E-23 1.1E-27 208.3 12.8 338 5-469 12-351 (375)
6 4gc0_A D-xylose-proton symport 99.9 6.1E-21 2.1E-25 198.5 19.4 148 28-196 54-215 (491)
7 2cfq_A Lactose permease; trans 99.8 6.8E-20 2.3E-24 187.4 7.5 156 7-191 21-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 8.4E-13 2.9E-17 135.0 13.5 169 3-202 262-434 (451)
9 3o7q_A L-fucose-proton symport 99.2 6.3E-11 2.1E-15 120.6 13.8 157 4-196 269-427 (438)
10 2cfq_A Lactose permease; trans 99.2 2.8E-11 9.7E-16 123.2 10.7 161 9-202 236-400 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 1.2E-10 4E-15 120.7 11.9 174 7-205 297-475 (491)
12 4gc0_A D-xylose-proton symport 98.9 2.3E-08 7.9E-13 103.2 15.5 160 16-205 299-466 (491)
13 2gfp_A EMRD, multidrug resista 98.7 2.8E-09 9.6E-14 106.2 2.0 154 4-189 210-364 (375)
14 2xut_A Proton/peptide symporte 98.3 1.3E-06 4.6E-11 90.8 9.8 152 30-205 336-506 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=7.2e-29 Score=258.69 Aligned_cols=406 Identities=14% Similarity=0.201 Sum_probs=279.6
Q ss_pred chhhhhhhhhhhHHHHHHhhhh-----cCCChhhHhhHHHhhHHHHhhhhhhhhHHhhh-ccchhHHHHHHHHHHHHhhH
Q 042477 2 AGKERFAFKGVASNLVTYLTDV-----MKMSNSSAAKTVSSWNGLTSMLPLLLAPLADS-YWDRHSTILAFSFIYVLGLM 75 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~-~~Gr~~~i~~~~~~~~ig~~ 75 (478)
.+++++++|++...++.|++++ +|.++.+.+++.+.+.++..++++++|+++|| + |||+++..+.++..++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~~~~~~~~~~~~~~ 100 (491)
T 4aps_A 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPAVFWGGVLIMLGHI 100 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHH
Confidence 4678899999999999999988 99999999999999999999999999999999 7 999999999999999999
Q ss_pred HhhhcccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhh
Q 042477 76 ALTSTAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKW 155 (478)
Q Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 155 (478)
++..+ ++.+.++++|+++|+|.|...|...++++|++|+++.+ |+.++++
T Consensus 101 ~~~~~------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~------------------r~~~~~~ 150 (491)
T 4aps_A 101 VLALP------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR------------------RDAGFSI 150 (491)
T ss_dssp HHHSC------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH------------------HHHHHHH
T ss_pred HHHHh------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc------------------ceeeehH
Confidence 98887 77899999999999999999999999999999987633 7788999
Q ss_pred HHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHH--------
Q 042477 156 WYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIK-------- 227 (478)
Q Consensus 156 ~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 227 (478)
++...++|..+||.+++++.+..||++.|.+.++..+++.++.++..++..+++++..+.+....+..+...
T Consensus 151 ~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 230 (491)
T 4aps_A 151 FVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG 230 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence 999999999999999999999899999999988877776666555544332211111111111111111110
Q ss_pred -------HHHHhcccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 042477 228 -------VAASKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFA 300 (478)
Q Consensus 228 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 300 (478)
....+.. +.+ +............ ... .....|++...+ ..++++..+..+++.....++
T Consensus 231 ~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 296 (491)
T 4aps_A 231 FIAIIVVMNLVGWN--------SLP--AYINLLTIVAIAI-PVF-YFAWMISSVKVT--STEHLRVVSYIPLFIAAVLFW 296 (491)
T ss_dssp HHHHHHHHHHHSSC--------CTT--HHHHHHHHHHHHH-HHH-HHHHHC--------------CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCc--------ccc--cchhhhhHHHHHH-HHH-HHHHHhhccccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 0111000 000 0000000000000 000 000001111111 133344444555666666777
Q ss_pred HHhccCcchhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHH
Q 042477 301 VIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLT 380 (478)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~ 380 (478)
..+.+....+..+....... -....+.....+.+..++..++.+++.+ |..+ ++....+++..|.++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~----r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDS----SWFPVSWFQSLNPLFIMLYTPFFAWLWT----AWKK----NQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCC----SSSCSGGGTTHHHHHHHHHHHHHHHHHH----HTTT----C---CHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHhcc----CccCHHHHhccchHHHHHHHHHHHHHHH----HHhc----cCCCchHHHHHHHHHH
Confidence 77777666554443221111 1145677777888888888888776544 4322 2345567788899999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHH
Q 042477 381 SIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLS 460 (478)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg 460 (478)
++++++........ ....+.+.+++++.+++.++++....+..++++.|.+|++.||+++|+.+...++|+.++
T Consensus 365 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~ 438 (491)
T 4aps_A 365 GLSFLLMAIPGALY------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438 (491)
T ss_dssp HHHHTTTHHHHHHC------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776543210 001234677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 042477 461 ALLISVIEFF 470 (478)
Q Consensus 461 ~~i~~~~~~~ 470 (478)
+.+.+.+.+.
T Consensus 439 ~~~~~~~~~~ 448 (491)
T 4aps_A 439 AQLVTLYNAK 448 (491)
T ss_dssp HHHGGGGGGS
T ss_pred HHHHHHHhcc
Confidence 9999888654
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=2.5e-29 Score=264.50 Aligned_cols=407 Identities=23% Similarity=0.388 Sum_probs=274.3
Q ss_pred chhhhhhhhhhhHHHHHHhhhhcC------CChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhH
Q 042477 2 AGKERFAFKGVASNLVTYLTDVMK------MSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLM 75 (478)
Q Consensus 2 ~~~~~~~~~~~~~~l~~yl~~~l~------~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~ 75 (478)
++++++++|++...++.|+++++| .++.+.+++.+.+.++..++.+++|+++||++|||+++.++.++..++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 467889999999999999999999 99999999999999999999999999999933999999999999999999
Q ss_pred HhhhcccccccCCCCCcc-chHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccch---h
Q 042477 76 ALTSTAFAWAESPANTTS-CSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKS---L 151 (478)
Q Consensus 76 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~---~ 151 (478)
++..+ . +.+.++++|+++|+|.|...|+..++++|++|+++ |+ .
T Consensus 101 ~~~~~------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~ 148 (524)
T 2xut_A 101 FLAIF------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--------------------KSLAQK 148 (524)
T ss_dssp HHHHT------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT--------------------TTHHHH
T ss_pred HHHHh------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc--------------------hHHHHH
Confidence 98888 5 78899999999999999999999999999999877 64 4
Q ss_pred hhhhHHHHHhhhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHH
Q 042477 152 FFKWWYFGVCSGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAAS 231 (478)
Q Consensus 152 ~~~~~~~~~~~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (478)
.+++++...++|..+||.+++++.+..||++.|.+.+++.+++.++.++..++.++++|++ ++..+..+.+....+
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 224 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP----KDPHGFLPVIRSALL 224 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC----ccchhHHHHHHHHHh
Confidence 5566999999999999999999988899999999988877776666555444333322222 111111111111111
Q ss_pred hcccCCCC--------------CCCCCCcccccc---------ccccccccCCCCCcccccCC-------CCCCchhhHH
Q 042477 232 KLKNGKAI--------------SPIDKSDAMELE---------LQEKPLCCNDQNKELDDELE-------NPKNVKHAVQ 281 (478)
Q Consensus 232 ~~~~~~~~--------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~ 281 (478)
++..+.+. ...++. .+.. +.+.+.. ....| +.....+ .+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~ 293 (524)
T 2xut_A 225 TKVEGKGNIGLVLALIGGVSAAYALVNI--PTLGIVAGLCCAMVLVMGFV--------GAGASLQLERARKSHPDAA-VD 293 (524)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHTGGGT--TTTCSSHHHHHHHHHHHHHH--------HTGGGTHHHHSCCSCCSSS-ST
T ss_pred hhhcccCccchhhhhhhhhhhhhhhccc--chhhhhhhhhhhhhhhhccc--------ccchhhHHhhhhccccHhH-HH
Confidence 11100000 000000 0000 0000000 00001 0000011 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhh
Q 042477 282 NVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCY 361 (478)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~ 361 (478)
++++.+....++.....++..+.+....+..+...++... + .+.+.+...+.+..++..++.+++..|..+|+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 368 (524)
T 2xut_A 294 GVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV- 368 (524)
T ss_dssp TTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC-
Confidence 3444444555555555666677776666655544433210 1 2456677777778888888888876665555432
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchh
Q 042477 362 QFKKGISVMQRMRIGMFLTSIAMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRM 441 (478)
Q Consensus 362 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 441 (478)
+.++.+++.+|+++.++++++....+... +.....+.+++++.+++.+++++...+..++++.+.+|++.
T Consensus 369 ----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 438 (524)
T 2xut_A 369 ----KLTALRKMGAGIAITGLSWIVVGTIQLMM------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438 (524)
T ss_dssp ------CCHHHHHTHHHHHHHHHHTTTTTTTTT------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 45667778888888888877665432100 00113466778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 042477 442 RTMGFALYTSVFGVGSFLSALLISVIEFF 470 (478)
Q Consensus 442 rg~~~g~~~~~~~~g~~lg~~i~~~~~~~ 470 (478)
||+++|++++..++|+.+++.+.+.+.+.
T Consensus 439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 439 KGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp CTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999988764
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.92 E-value=3.9e-24 Score=219.70 Aligned_cols=360 Identities=10% Similarity=0.001 Sum_probs=227.2
Q ss_pred hhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhh----cccccc
Q 042477 10 KGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTS----TAFAWA 85 (478)
Q Consensus 10 ~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~----~~~~~~ 85 (478)
+.....++ ++.+++ .++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++.+ +
T Consensus 45 ~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~----- 116 (451)
T 1pw4_A 45 KNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT----- 116 (451)
T ss_dssp TSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH-----
T ss_pred HHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhcc-----
Confidence 33344444 444667 9999999999999999999999999999996 9999999999999999999988 6
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
.+.+.++++|+++|+|.+...+...++++|.+|+++ |++++++.+...++|..
T Consensus 117 -------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--------------------r~~~~~~~~~~~~~g~~ 169 (451)
T 1pw4_A 117 -------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE--------------------RGGIVSVWNCAHNVGGG 169 (451)
T ss_dssp -------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH--------------------HHHHHHHHHHHHHHHHT
T ss_pred -------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh--------------------hhHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999877 99999999999999999
Q ss_pred HHhhhhhhhccccc-hhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCC
Q 042477 166 LGITLMSYIQDTFG-WVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDK 244 (478)
Q Consensus 166 ig~~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
+||.+++++.+..| |++.|++.+++.++..++.++..++.++.....++ + +.
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------------~~ 222 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI--E-------------------------EY 222 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC--T-------------------------TT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh--h-------------------------hh
Confidence 99999999888888 99999998877766655554444322111100000 0 00
Q ss_pred CccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhccccccCCCc
Q 042477 245 SDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIWTMLLMFAVIFQQPVTFFTKQGMAMKRNIGSR 324 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 324 (478)
. ++.+ .+.. +... +...+++....+ ....+.++..... .......+......+.. .+....|.
T Consensus 223 ~--~~~~-~~~~----~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~g~- 285 (451)
T 1pw4_A 223 K--NDYP-DDYN----EKAE--QELTAKQIFMQY-VLPNKLLWYIAIA---NVFVYLLRYGILDWSPT---YLKEVKHF- 285 (451)
T ss_dssp C--CC--------------------CCTHHHHHH-TSSCHHHHHHHHH---HHHHHHHHHHHHHHHHH---HBTTBSCC-
T ss_pred c--cccc-ccch----hhhh--cccccccchHHH-HHcCHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHhcCC-
Confidence 0 0000 0000 0000 000010000000 1111222221111 11111111111111111 12222121
Q ss_pred cccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCCC
Q 042477 325 FKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTS-IAMVIAAAVETKRLQRSKQAEA 403 (478)
Q Consensus 325 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 403 (478)
-....+.+.....+..++..++...+ .+|.. .++++.+.++.++.. +++++....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~------------- 341 (451)
T 1pw4_A 286 ALDKSSWAYFLYEYAGIPGTLLCGWM----SDKVF-------RGNRGATGVFFMTLVTIATIVYWMN------------- 341 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTS-------TTCHHHHHHHHHHHHHHHHHHTTSC-------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHh-------cCCchhHHHHHHHHHHHHHHHHHHh-------------
Confidence 01112333444444444444444433 23320 023344445544444 444433221
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhH-HHHHHHHHHHHhhhccc
Q 042477 404 KPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGV-GSFLSALLISVIEFFTS 472 (478)
Q Consensus 404 ~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~-g~~lg~~i~~~~~~~~~ 472 (478)
...+.+.+....++.+++.....+....+..+.+|++.||+++|+.+....+ |+.+++.+.+.+.+..+
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0125566667777888888888888899999999999999999999999999 99999999998876544
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=8.9e-23 Score=208.89 Aligned_cols=335 Identities=9% Similarity=0.030 Sum_probs=219.5
Q ss_pred hHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHh---hhcccccccCCC
Q 042477 13 ASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMAL---TSTAFAWAESPA 89 (478)
Q Consensus 13 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~---~~~~~~~~~~~~ 89 (478)
...+..++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.++. ..+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~--------- 114 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAAEI--------- 114 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 33445557789999999999999999999999999999999996 99999999999999999998 555
Q ss_pred CCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhh
Q 042477 90 NTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGIT 169 (478)
Q Consensus 90 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~ 169 (478)
++.+.++++|++.|+|.|...+...++++|.+|+++ |++.+++.+...++|..++|.
T Consensus 115 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~--------------------r~~~~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 115 ---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS--------------------GHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT--------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh--------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999887 999999999999999999999
Q ss_pred hhhhhc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHH
Q 042477 170 LMSYIQ-DTFG-------------------------WVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIV 223 (478)
Q Consensus 170 ~~~~i~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (478)
+++++. +..+ |++.|++.++..++..++.++.+. ++.+++.+++++.
T Consensus 172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~~~~----- 244 (438)
T 3o7q_A 172 FGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQSDNHSDAKQ----- 244 (438)
T ss_dssp HTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTTTCCCCSST-----
T ss_pred HHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccccccccccc-----
Confidence 999887 5544 999998776655555444333211 1111110000000
Q ss_pred HHHHHHHHhcccCCCCCCCCCCccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHH-HHHHHHHHHH
Q 042477 224 QAIKVAASKLKNGKAISPIDKSDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPI-WTMLLMFAVI 302 (478)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ 302 (478)
. + ....+ .+ +.+.+.++..... +.........
T Consensus 245 ---------------------~--~------------------~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T 3o7q_A 245 ---------------------G--S------------------FSASL-----SR-LARIRHWRWAVLAQFCYVGAQTAC 277 (438)
T ss_dssp ---------------------T--S------------------HHHHH-----HH-HTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------c--c------------------hhhhH-----HH-HHhChHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00000 00 0011111111111 1111111111
Q ss_pred hccCcchhhhhhccccccCCCccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHHHHH
Q 042477 303 FQQPVTFFTKQGMAMKRNIGSRFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFLTSI 382 (478)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~~~~ 382 (478)
... ...+ .+.+..|. -....+.+.....+..++..++...+ .+| .++++.+..+.++.++
T Consensus 278 ~~~----~~~~--~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l----~~r---------~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 278 WSY----LIRY--AVEEIPGM-TAGFAANYLTGTMVCFFIGRFTGTWL----ISR---------FAPHKVLAAYALIAMA 337 (438)
T ss_dssp HHH----HHHH--HHHHSTTC-CHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------SCHHHHHHHHHHHHHH
T ss_pred HHH----HHHH--hhhccCCc-chhHHHHHHHHHHHHHHHHHHHHHHH----HHH---------hcchHHHHHHHHHHHH
Confidence 111 1111 01111111 01122333333344444444444333 233 3344556677777766
Q ss_pred HHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHH
Q 042477 383 AMVIAAAVETKRLQRSKQAEAKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSAL 462 (478)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~ 462 (478)
++++.... .+. +.+..+++.+++.....|..+++..+..|++ ++.++++.. ...+|+.+++.
T Consensus 338 ~~~~~~~~---------------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~ 399 (438)
T 3o7q_A 338 LCLISAFA---------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTP 399 (438)
T ss_dssp HHHHHHHC---------------CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHH
T ss_pred HHHHHHHc---------------CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHH
Confidence 66554432 122 2344457788888888899999999999988 999999888 67899999999
Q ss_pred HHHHhhhccc
Q 042477 463 LISVIEFFTS 472 (478)
Q Consensus 463 i~~~~~~~~~ 472 (478)
+.+.+.+..+
T Consensus 400 ~~g~l~~~~g 409 (438)
T 3o7q_A 400 VMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999888766
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=3.1e-23 Score=208.35 Aligned_cols=338 Identities=11% Similarity=0.037 Sum_probs=219.9
Q ss_pred hhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccc
Q 042477 5 ERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAW 84 (478)
Q Consensus 5 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~ 84 (478)
..+......+.++. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++...+
T Consensus 12 ~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---- 85 (375)
T 2gfp_A 12 GQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVTT---- 85 (375)
T ss_dssp HHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHh----
Confidence 34444444555555 4578999999999999999999999999999999996 99999999999999999999888
Q ss_pred ccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhh
Q 042477 85 AESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGS 164 (478)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 164 (478)
++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++.+...++|.
T Consensus 86 --------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~ 137 (375)
T 2gfp_A 86 --------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ--------------------LRHANSLLNMGILVSP 137 (375)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--------------------CCSHHHHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH--------------------HHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999877 9999999999999999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccccccCCCccccCChhHHHHHHHHHHHHhcccCCCCCCCCC
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFCKKKSDHEALKNKPFMSIVQAIKVAASKLKNGKAISPIDK 244 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
.++|.+++++.+..+|+..|.+.++..++..+...+.. +++++++++ +
T Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~--------------------------- 185 (375)
T 2gfp_A 138 LLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWM---PETRPVDAP--R--------------------------- 185 (375)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSS---CCCSTTTCC--C---------------------------
T ss_pred HhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHC---cccCCCCcc--c---------------------------
Confidence 99999999999888999999887776555443222222 111111100 0
Q ss_pred CccccccccccccccCCCCCcccccCCCCCCchhhHHHHHHHHHHHHHH-HHHHHHHHHhccCcchhhhhhccccccCCC
Q 042477 245 SDAMELELQEKPLCCNDQNKELDDELENPKNVKHAVQNVKILLRLLPIW-TMLLMFAVIFQQPVTFFTKQGMAMKRNIGS 323 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ 323 (478)
+ + ....+ ++ ..+.++++...... .............+..+ .+..+.+
T Consensus 186 ~--~------------------~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~----- 233 (375)
T 2gfp_A 186 T--R------------------LLTSY-----KT-LFGNSGFNCYLLMLIGGLAGIAAFEACSGVLM-GAVLGLS----- 233 (375)
T ss_dssp C--C------------------TTTCS-----TH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSS-HHHHHHH-----
T ss_pred c--c------------------HHHHH-----HH-HhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCC-----
Confidence 0 0 00001 11 22223333222111 11111111111111111 1101111
Q ss_pred ccccCchhhcchhHHHHHHHHHHHHHHHHHHHhHhhhhccCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCC
Q 042477 324 RFKIPPATLQSAITVSIILLMPLYDTVLIPIIQIITCYQFKKGISVMQRMRIGMFL-TSIAMVIAAAVETKRLQRSKQAE 402 (478)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
....+.+.....+..++..++.++ +.+|. ++ ++..+..+ ...+.........
T Consensus 234 --~~~~g~~~~~~~~~~~~~~~~~~~----l~~r~---------~~--~~~~~~~~~~~~~~~~~~~~~~---------- 286 (375)
T 2gfp_A 234 --SMTVSILFILPIPAAFFGAWFAGR----PNKRF---------ST--LMWQSVICCLLAGLLMWIPDWF---------- 286 (375)
T ss_dssp --HHHHHHHHHTHHHHHHHHHHHHHT----TTTHH---------HH--HHHHHHHHHHHTSSSSSHHHHH----------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---------HH--HHHHHHHHHHHHHHHHHHHhhh----------
Confidence 111233333333333343333322 22221 11 33444433 2222221111100
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 042477 403 AKPITIFWLLPEYVLLGISDIFTVVAMQEFFYNEVPVRMRTMGFALYTSVFGVGSFLSALLISVIEF 469 (478)
Q Consensus 403 ~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~lg~~i~~~~~~ 469 (478)
...+.+..+...++.+++.+...+....+..|..| +.||+++|+.+....+|..+++.+.+.+.+
T Consensus 287 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 351 (375)
T 2gfp_A 287 -GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ 351 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred -ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01245556677888899999999999999999999 789999999999999999999988877654
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.86 E-value=6.1e-21 Score=198.50 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=116.2
Q ss_pred hhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCC------CccchHHHHHH
Q 042477 28 NSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPAN------TTSCSSFLFLP 101 (478)
Q Consensus 28 ~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~------~~~~~~~~~~~ 101 (478)
+.+.+++.+.+.++..+++++.|+++||+ |||+++.++.+++.++.++++++.......... .-.+...++++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 34568899999999999999999999996 999999999999999999887532100000000 01578899999
Q ss_pred HHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcc-----
Q 042477 102 LSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQD----- 176 (478)
Q Consensus 102 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~----- 176 (478)
|+++|+|.|+..+..+++++|..|+++ |++..++.+....+|.++++.++..+..
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~--------------------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 192 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHI--------------------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS 192 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGG--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHh--------------------hhhhHHhhhhhhhhhhhhhhhcchhhccccccc
Confidence 999999999999999999999999887 9999999999999999998887765532
Q ss_pred ---ccchhHHHHHHHHHHHHHHH
Q 042477 177 ---TFGWVIGFAIPTIAMLTSTA 196 (478)
Q Consensus 177 ---~~g~~~~f~~~~~~~~~~~~ 196 (478)
..+|+..+.+..+..++..+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
T 4gc0_A 193 WLNTDGWRYMFASECIPALLFLM 215 (491)
T ss_dssp TTTTTHHHHHHHTTHHHHHHHHH
T ss_pred cccchhhHHHhhhhhhhhhhhhh
Confidence 23577766655554444333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.79 E-value=6.8e-20 Score=187.41 Aligned_cols=156 Identities=11% Similarity=0.054 Sum_probs=107.1
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccccccc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAE 86 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~ 86 (478)
+++..+.++++.|+++++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++..+..++..........
T Consensus 21 ~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~~--- 96 (417)
T 2cfq_A 21 FIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIFG--- 96 (417)
T ss_dssp HHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTHH---
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 34555567899999999999999999999999999999999999999996 99999999888776543222111000
Q ss_pred CCCCCccch-HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhh
Q 042477 87 SPANTTSCS-SFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSL 165 (478)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 165 (478)
... ..++.++++.+++.|...+...+...+..++..+ +++..++......++|..
T Consensus 97 ------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------------~~~~~~g~~~~~~~~g~~ 152 (417)
T 2cfq_A 97 ------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR------------------RSNFEFGRARMFGCVGWA 152 (417)
T ss_dssp ------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH------------------HHTCCHHHHSSSTTTHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh------------------hcccchHHHHHHHHHHHH
Confidence 000 1123445554554444333334444443322110 156667777777899999
Q ss_pred HHhhhhhhhccccchhHHHHHHHHHH
Q 042477 166 LGITLMSYIQDTFGWVIGFAIPTIAM 191 (478)
Q Consensus 166 ig~~~~~~i~~~~g~~~~f~~~~~~~ 191 (478)
++|.+++++.+ .+|+..|++.++..
T Consensus 153 ~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 153 LGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp HHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 99999998876 68999998766543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=8.4e-13 Score=134.97 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=143.5
Q ss_pred hhhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhcc--chhHHHHHHHHHHH-HhhHHhhh
Q 042477 3 GKERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYW--DRHSTILAFSFIYV-LGLMALTS 79 (478)
Q Consensus 3 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~--Gr~~~i~~~~~~~~-ig~~l~~~ 79 (478)
++..+.++++..+++.|+++.+|.++.+.+++.+...++..++.++.|+++|| + |||+.+..+..+.. ++.+++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (451)
T 1pw4_A 262 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWM 340 (451)
T ss_dssp HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 34456777888899999998899999999999999999999999999999999 7 99999888877776 66666555
Q ss_pred cccccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHH
Q 042477 80 TAFAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFG 159 (478)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 159 (478)
... .+.+.+.+..++.|++.+...+...+++.|.+|+++ |++++++++..
T Consensus 341 ~~~----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--------------------~g~~~~~~~~~ 390 (451)
T 1pw4_A 341 NPA----------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA--------------------AGTAAGFTGLF 390 (451)
T ss_dssp CCT----------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH--------------------HHHHHHHHHHH
T ss_pred hcc----------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh--------------------hhhHHHHHHHH
Confidence 411 356677788888899999888888999999999877 99999999999
Q ss_pred Hhh-hhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 160 VCS-GSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 160 ~~~-G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
.++ |..++|.+.+++.+..||+..|.+.+++.+++.++.++..
T Consensus 391 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 391 GYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999988887777766655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.23 E-value=6.3e-11 Score=120.58 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=128.2
Q ss_pred hhhhhhhhhhHHHHHH-hhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhccc
Q 042477 4 KERFAFKGVASNLVTY-LTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAF 82 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~y-l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~ 82 (478)
+....++++..+++.| +++.+|.++.+.+...+...++..++.+++|+++||+ |||+++..+.++..++.++....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-- 345 (438)
T 3o7q_A 269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAFA-- 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHc--
Confidence 3445667777899999 8888899999999999999999999999999999996 99999999999998888877766
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
.+... .+..++.|++.+...|...++..|.+|++ ++...++.. ...+
T Consensus 346 ----------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~-~~~~ 392 (438)
T 3o7q_A 346 ----------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD---------------------TKYGSSFIV-MTII 392 (438)
T ss_dssp ----------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG---------------------HHHHHHHHH-HTTH
T ss_pred ----------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc---------------------ccchhhHHH-HHHH
Confidence 33433 34447788999999999999999988843 556666655 5679
Q ss_pred hhhHHhhhhhhhccccc-hhHHHHHHHHHHHHHHH
Q 042477 163 GSLLGITLMSYIQDTFG-WVIGFAIPTIAMLTSTA 196 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g-~~~~f~~~~~~~~~~~~ 196 (478)
|..++|.+.|++.+..| ++..|.+.+++.++..+
T Consensus 393 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 393 GGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 99999999999999888 99999877665544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.22 E-value=2.8e-11 Score=123.25 Aligned_cols=161 Identities=7% Similarity=0.077 Sum_probs=124.0
Q ss_pred hhhhhHHHHHHhhhhcCCC---hhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccc
Q 042477 9 FKGVASNLVTYLTDVMKMS---NSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWA 85 (478)
Q Consensus 9 ~~~~~~~l~~yl~~~l~~~---~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~ 85 (478)
|+.....++.|+++.++.. ....+...+...+...++.+++|+++||+ |||+++..+.++.+++.+++...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~~----- 309 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA----- 309 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3344456778887666532 34456667777777888899999999996 99999999988888877766655
Q ss_pred cCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhh-HHHHHhhhh
Q 042477 86 ESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKW-WYFGVCSGS 164 (478)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~ 164 (478)
.+.+.+++..++.+++.+...+....+..|.+|++. |++.+++ ++...++|+
T Consensus 310 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~~lg~ 362 (417)
T 2cfq_A 310 -------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF--------------------SATIYLVCFCFFKQLAM 362 (417)
T ss_dssp -------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH--------------------HHHHHHHHHTTTHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH--------------------HHHHHHHHHHHHHhHHH
Confidence 455666666677777777767777889999999876 8999888 577888999
Q ss_pred hHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 042477 165 LLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFAS 202 (478)
Q Consensus 165 ~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 202 (478)
.++|.++|++.+..|++..|.+.+++.+++.++.++..
T Consensus 363 ~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 363 IFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999998888999999888877777666554433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.16 E-value=1.2e-10 Score=120.71 Aligned_cols=174 Identities=13% Similarity=0.064 Sum_probs=132.6
Q ss_pred hhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHH-----HHHHHHHHhhHHhhhcc
Q 042477 7 FAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTIL-----AFSFIYVLGLMALTSTA 81 (478)
Q Consensus 7 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~-----~~~~~~~ig~~l~~~~~ 81 (478)
..+......++.|.++.++.+..+.++..+...+...++.++.|++.||+ |||+... .+.++..++.+++....
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPG 375 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788899888888878888888888999999999999999996 9986654 77777777777766542
Q ss_pred cccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHh
Q 042477 82 FAWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVC 161 (478)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 161 (478)
.. ..++.+.+.+.+.++.++.|+|.+...|...+++.|.+|++. |++++++++...+
T Consensus 376 ~~---~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~ 432 (491)
T 4aps_A 376 AL---YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF--------------------NSQMMSMWFLSSS 432 (491)
T ss_dssp HH---CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC--------------------SSSSTHHHHHHHH
T ss_pred Hh---cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH--------------------HHHHHHHHHHHHH
Confidence 10 000011456777788888999999999999999999999888 9999999999999
Q ss_pred hhhhHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 042477 162 SGSLLGITLMSYIQDTFGWVIGFAIPTIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 162 ~G~~ig~~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 205 (478)
+|..+++.+.+++.+ .++...|.+.+.+.+++.++.++..++.
T Consensus 433 ~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 433 VGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876 4777788777776666666655555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.88 E-value=2.3e-08 Score=103.22 Aligned_cols=160 Identities=8% Similarity=0.037 Sum_probs=114.4
Q ss_pred HHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHHHHHhhHHhhhcccccccCCCCCccch
Q 042477 16 LVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCS 95 (478)
Q Consensus 16 l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~ 95 (478)
...++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.+.+....... ...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 369 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ--------APG 369 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTT--------CCH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcc--------cch
Confidence 34455567888888887777777888899999999999996 999999999988888877766542211 112
Q ss_pred HHHHHHHH--HHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhh
Q 042477 96 SFLFLPLS--LISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSY 173 (478)
Q Consensus 96 ~~~~~~~~--l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~ 173 (478)
...++... ..+++. +..|....+.+|.+|.+. |++++++.+...++|+++++.+.+.
T Consensus 370 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~--------------------R~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI--------------------RGKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp HHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT--------------------HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 223332 344677789999999988 9999999999999999999888776
Q ss_pred hcc------ccchhHHHHHHHHHHHHHHHHHHhhcccc
Q 042477 174 IQD------TFGWVIGFAIPTIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 174 i~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 205 (478)
+.+ ..++...|++.+.+.+++.++.++..|+.
T Consensus 429 l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 429 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 643 24556677777777777766666666543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.71 E-value=2.8e-09 Score=106.20 Aligned_cols=154 Identities=10% Similarity=-0.029 Sum_probs=118.7
Q ss_pred hhhhhhhhhhHHHHHHhhhhcCCChhhHhhHHHhhHHHHhhhhhhhhHHhhhccchhHHHHHHHHH-HHHhhHHhhhccc
Q 042477 4 KERFAFKGVASNLVTYLTDVMKMSNSSAAKTVSSWNGLTSMLPLLLAPLADSYWDRHSTILAFSFI-YVLGLMALTSTAF 82 (478)
Q Consensus 4 ~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~i~~~~~G~laD~~~Gr~~~i~~~~~~-~~ig~~l~~~~~~ 82 (478)
+...++++...+++.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+..+ ...+..+......
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 210 GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 33456666777788888888999999999999999999999999999999996 872 3333333 3333332222210
Q ss_pred ccccCCCCCccchHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhh
Q 042477 83 AWAESPANTTSCSSFLFLPLSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCS 162 (478)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 162 (478)
. ..+.+.+++..++.|++.+...|...++..|.+| ++ |+++++..+...++
T Consensus 287 ~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~--------------------~g~~~g~~~~~~~~ 337 (375)
T 2gfp_A 287 G--------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL--------------------AGTAGALVGGLQNI 337 (375)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH--------------------HHHHHHHHHHHHHH
T ss_pred c--------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc--------------------cchHHHHHHHHHHH
Confidence 0 0355667778888999999999999999999988 55 99999999999999
Q ss_pred hhhHHhhhhhhhccccchhHHHHHHHH
Q 042477 163 GSLLGITLMSYIQDTFGWVIGFAIPTI 189 (478)
Q Consensus 163 G~~ig~~~~~~i~~~~g~~~~f~~~~~ 189 (478)
|..++|.+.+.+.+..+|...+.+...
T Consensus 338 g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 338 GSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 999999999999887788887776443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.32 E-value=1.3e-06 Score=90.83 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=98.9
Q ss_pred hHhhHHHhhHHHHhhhhhhhhHHh----hhccch----hHHHHHHHHHHHHhhHHhhhcccccccCCCCCccchHHHHHH
Q 042477 30 SAAKTVSSWNGLTSMLPLLLAPLA----DSYWDR----HSTILAFSFIYVLGLMALTSTAFAWAESPANTTSCSSFLFLP 101 (478)
Q Consensus 30 ~~~~~~~~~~~~~~i~~~~~G~la----D~~~Gr----~~~i~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (478)
..+.+.....+...+..++.+++. ||. || ++.+.++.++..++.+++...... .+.+...+.+.++++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 411 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLM---MDGGSALSIFWQILP 411 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTT---TTTTCCCCSHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCcCHHHHHHH
Confidence 345555555556666666666654 443 43 356777888888887776654210 000001356677788
Q ss_pred HHHHHHhccccccchhhhhhccCCCCCCCCcccccccccccccccccchhhhhhHHHHHhhhhhHHhhhhhhhcccc--c
Q 042477 102 LSLISLGLAGYNPSLQAFGADQMDNNNDDEEILPCTLDNQNKKSNNNKSLFFKWWYFGVCSGSLLGITLMSYIQDTF--G 179 (478)
Q Consensus 102 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~~~~~i~~~~--g 179 (478)
.++.|+|.+...|...++..|.+|++. |++.+++++...++|..+||.+.+++.+.. +
T Consensus 412 ~~l~g~~~~~~~~~~~~~~~~~~p~~~--------------------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~ 471 (524)
T 2xut_A 412 YALLTFGEVLVSATGLEFAYSQAPKAM--------------------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTE 471 (524)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHCCTTC--------------------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHH--------------------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 889999999999999999999999887 999999999999999999999999887632 2
Q ss_pred h---------hHHHHHHHHHHHHHHHHHHhhcccc
Q 042477 180 W---------VIGFAIPTIAMLTSTAFFSFASRFC 205 (478)
Q Consensus 180 ~---------~~~f~~~~~~~~~~~~~~~~~~~~~ 205 (478)
| +..|.+.+.+.+++.++.++..++.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 472 QIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3336666665556555555544433
Done!