BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042478
(954 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 330 bits (847), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 228/646 (35%), Positives = 323/646 (50%), Gaps = 74/646 (11%)
Query: 114 TTRSWEFMGLHYYQSSKNLSTESNMXXXXXXXXXXXXVWPESESFSDKGMGQAPVPPHWK 173
TTRSW+F+G ++ ESN+ +WPES SF D+G +P PP WK
Sbjct: 1 TTRSWDFLGFPLTVPRRS-QVESNIVVGVLDTG----IWPESPSFDDEGF--SPPPPKWK 53
Query: 174 GICQKGEKFNSSNCNRKLIGARWF----------IKGIMDMINASTNTDEXXXXXXXXXX 223
G C+ F CNRK+IGAR + + G D T+T
Sbjct: 54 GTCETSNNFR---CNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQA 110
Query: 224 XXX-------------XXXXIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPL 270
YK CW+ GC+D D+L A+D AI DGVD++S+S+G P
Sbjct: 111 NLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPR 170
Query: 271 FSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTA 330
++D +IAIGSFHA+ +GI +SAGN GP T + +PW+++V A+T+DR F T
Sbjct: 171 HYFVD---AIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQ 227
Query: 331 ITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI---AFDPDSANDCRQGSLNATLAAGKII 387
+ +GN Q Q + I + + L I FD ++ C S+N L GKI+
Sbjct: 228 VQIGNGQSF--QGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIV 285
Query: 388 LCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIR 447
+C + + + G G++ D DS L P ++ L YI
Sbjct: 286 VCEASFGPHEFFKSL-----DGAAGVLMTSNTRDYADSYPL-PSSVLDPNDLLATLRYIY 339
Query: 448 RARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYP---P 504
RSP A + T++ + +P V SFSSRGPN + V+KPDI PGV+IL+A+P P
Sbjct: 340 SIRSPGATIFKSTTIL-NASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAP 398
Query: 505 IGS-KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNI 563
+G + + ++SGTSMSCPH+ GIA +K+ + WSPAAI+SAL+TTAS MN
Sbjct: 399 VGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASP-----MN- 452
Query: 564 FEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSK 623
+A+ F G GHVNP KA+ PGLVYD DY++FLC G+N ++ R+T
Sbjct: 453 ---ARFNPQAE-FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDY 508
Query: 624 INCLKNN-HLALDLNLPSITI---PNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVN 679
C N DLN PS + P+ N+ R +T+V S Y A++ AP G+
Sbjct: 509 SACTSGNTGRVWDLNYPSFGLSVSPSQTFNQ--YFNRTLTSVAPQASTYRAMISAPQGLT 566
Query: 680 MTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
++V P V+SFN SF +T + K V SL W+D
Sbjct: 567 ISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVS------ASLVWSD 606
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 216/666 (32%), Positives = 338/666 (50%), Gaps = 91/666 (13%)
Query: 114 TTRSWEFMGLHYYQSSKNLSTESNMXXXXXXXXXXXXVWPESESFSDKGMGQAPVPPHWK 173
TT + +F+ L+ S L S + +WPES SF D GM + +P WK
Sbjct: 1 TTHTSDFLKLN---PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPE--IPKRWK 55
Query: 174 GICQKGEKFNSSNCNRKLIGARWFIKGIMD-------MINASTNTDEXXXXXXXXXX--- 223
GIC+ G +FN+S CNRKLIGA +F KGI+ +N++ +TD
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNF 115
Query: 224 -----------------XXXXXXXIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGN 266
+YK ++ G +D++ A D+A+ DGVD++S+S G
Sbjct: 116 AKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGY 175
Query: 267 E-IPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDR 325
IPL+ D+I+I SF A+ KG+ V +SAGN GP ++ N +PWI+ V + DR
Sbjct: 176 RFIPLY-----EDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDR 230
Query: 326 AFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLA--A 383
F +TLGN + G S+ + + + Y++ ++ DC L + +
Sbjct: 231 TFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLS-------DCSSEELLSQVENPE 283
Query: 384 GKIILCFSRPDTQDIQ--------SAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVN 435
I++C D D AAI +++ GV A F P + VN
Sbjct: 284 NTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGV-FRSATFPN---------PGVVVN 333
Query: 436 YEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPG 495
+ G Q+++Y++ + +P A ++ ET + +P VA+ S+RGP+ + KPDI+APG
Sbjct: 334 KKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPG 393
Query: 496 VDILSAYPP------IGSKDI--QGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRS 547
V IL+AYPP IG+ + Y L SGTSM+ PH AGIAA++K+ H +WSP+AIRS
Sbjct: 394 VLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRS 453
Query: 548 ALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLC 607
A++TTA I ++ K A P D+G GHV+PN+A++PGLVYD T +DY+ LC
Sbjct: 454 AMMTTADPLDNTRKPI-KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLC 512
Query: 608 FMGHNDASISRLTKSKI--NCLKNNHLALDLNLPS-ITIPNLHNNETV---TVTRKVTNV 661
+ + + +S NC ++ + DLN PS I + ++ N T+ R VTNV
Sbjct: 513 SLNFTEEQFKTIARSSASHNC---SNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNV 569
Query: 662 GQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPD--AEYRFG 719
G+ + Y+A ++AP ++V P+++ F + S+ +T + + D G
Sbjct: 570 GKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLT------IRYIGDEGQSRNVG 623
Query: 720 SLTWTD 725
S+TW +
Sbjct: 624 SITWVE 629
>pdb|3BBO|K Chain K, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 224
Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 121/138 (87%), Positives = 132/138 (95%)
Query: 817 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTP 876
EAGKATPAPPVGPALG+KGVNIMAFCKDYNARTADK G+VIPVEITV+DD+SFTFILKTP
Sbjct: 85 EAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFTFILKTP 144
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAA 936
PASVLLLKA+G EKGSKDP+ +KVGKITI+QLR IATEKLPDLNCT+IESAMRIIAGTAA
Sbjct: 145 PASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAA 204
Query: 937 NMGIDIDPPVLETKKKEL 954
NMGIDIDPP+L KKKE+
Sbjct: 205 NMGIDIDPPILVKKKKEV 222
>pdb|1JQM|A Chain A, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
pdb|1JQS|A Chain A, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
pdb|1JQT|A Chain A, Fitting Of L11 Protein In The Low Resolution Cryo-Em Map
Of E.Coli 70s Ribosome
Length = 139
Score = 182 bits (463), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 105/125 (84%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPP
Sbjct: 14 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
AS LL KAAG+EKGS +PK++ VGK+T +Q+ IA K+PDLN S+E+AM+II GTA +
Sbjct: 74 ASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKS 133
Query: 938 MGIDI 942
MGI++
Sbjct: 134 MGIEV 138
>pdb|1EG0|K Chain K, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 140
Score = 182 bits (463), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 105/125 (84%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPP
Sbjct: 15 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPP 74
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
AS LL KAAG+EKGS +PK++ VGK+T +Q+ IA K+PDLN S+E+AM+II GTA +
Sbjct: 75 ASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKS 134
Query: 938 MGIDI 942
MGI++
Sbjct: 135 MGIEV 139
>pdb|1MMS|A Chain A, Crystal Structure Of The Ribosomal Protein L11-Rna Complex
pdb|1MMS|B Chain B, Crystal Structure Of The Ribosomal Protein L11-Rna Complex
pdb|1MVR|L Chain L, Decoding Center & Peptidyl Transferase Center From The
X-Ray Structure Of The Thermus Thermophilus 70s
Ribosome, Aligned To The Low Resolution Cryo-Em Map Of
E.Coli 70s Ribosome
pdb|1OLN|A Chain A, Model For Thiostrepton Antibiotic Binding To L11 Substrate
From 50s Ribosomal Rna
Length = 140
Score = 182 bits (462), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 105/125 (84%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPP
Sbjct: 14 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
AS LL KAAG+EKGS +PK++ VGK+T +Q+ IA K+PDLN S+E+AM+II GTA +
Sbjct: 74 ASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKS 133
Query: 938 MGIDI 942
MGI++
Sbjct: 134 MGIEV 138
>pdb|1GIY|L Chain L, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1MJ1|L Chain L, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
pdb|1ML5|LL Chain l, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|L Chain L, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4.
pdb|2B66|K Chain K, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|K Chain K, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|K Chain K, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2JQ7|A Chain A, Model For Thiostrepton Binding To The Ribosomal L11-Rna
pdb|2K3F|A Chain A, Ribosomal Protein L11 From Thermotoga Maritima
Length = 141
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 105/125 (84%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPP
Sbjct: 15 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPP 74
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
AS LL KAAG+EKGS +PK++ VGK+T +Q+ IA K+PDLN S+E+AM+II GTA +
Sbjct: 75 ASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKS 134
Query: 938 MGIDI 942
MGI++
Sbjct: 135 MGIEV 139
>pdb|487D|L Chain L, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
pdb|1PN7|L Chain L, Coordinates Of S12, L11 Proteins And P-Trna, From The 70s
X- Ray Structure Aligned To The 70s Cryo-Em Map Of
E.Coli Ribosome
pdb|1PN8|L Chain L, Coordinates Of S12, L11 Proteins And E-Site Trna From 70s
Crystal Structure Separately Fitted Into The Cryo-Em Map
Of E.Coli 70s.Ef-G.Gdpnp Complex. The Atomic Coordinates
Originally From The E-Site Trna Were Fitted In The
Position Of The Hybrid PE-Site Trna
Length = 133
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 105/125 (84%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPP
Sbjct: 8 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPP 67
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
AS LL KAAG+EKGS +PK++ VGK+T +Q+ IA K+PDLN S+E+AM+II GTA +
Sbjct: 68 ASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKS 127
Query: 938 MGIDI 942
MGI++
Sbjct: 128 MGIEV 132
>pdb|1R2W|A Chain A, Coordinates Of L11 With 58nts Of 23s Rrna Fitted Into The
Cryo-Em Map Of The 70s Ribosome
pdb|1R2X|A Chain A, Coordinates Of L11 With 58nts Of 23s Rrna Fitted Into The
Cryo-Em Map Of Ef-Tu Ternary Complex (Gdp.Kirromycin)
Bound 70s Ribosome
Length = 141
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/126 (67%), Positives = 105/126 (83%), Gaps = 1/126 (0%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKT-P 876
AGKATPAPPVGPALG GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KT P
Sbjct: 14 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTEP 73
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAA 936
PAS LL KAAG+EKGS +PK++ VGK+T +Q+ IA K+PDLN S+E+AM+II GTA
Sbjct: 74 PASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAK 133
Query: 937 NMGIDI 942
+MGI++
Sbjct: 134 SMGIEV 139
>pdb|3FIN|L Chain L, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 138
Score = 160 bits (405), Expect = 4e-39, Method: Composition-based stats.
Identities = 76/125 (60%), Positives = 99/125 (79%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG G NIM F K +NA TA+ ++PVEIT+Y DRSFTF+ KTPP
Sbjct: 13 AGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPP 72
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
AS L+ KAAG+EKG+ P ++KVG+IT EQ+ IA +K+PDLN T +E+A R+IAG+A +
Sbjct: 73 ASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARS 132
Query: 938 MGIDI 942
MG+++
Sbjct: 133 MGVEV 137
>pdb|2J01|K Chain K, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|K Chain K, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|L Chain L, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|L Chain L, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|L Chain L, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|2NXN|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2H8W|A Chain A, Solution Structure Of Ribosomal Protein L11
pdb|2E34|A Chain A, L11 Structure With Rdc And Rg Refinement
pdb|2E35|A Chain A, The Minimized Average Structure Of L11 With Rg Refinement
pdb|2E36|A Chain A, L11 With Sans Refinement
pdb|3CJT|B Chain B, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|D Chain D, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|F Chain F, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|H Chain H, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|J Chain J, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|L Chain L, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|N Chain N, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|P Chain P, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3F1F|K Chain K, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|K Chain K, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WH2|K Chain K, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|K Chain K, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2KLM|A Chain A, Solution Structure Of L11 With Saxs And Rdc
pdb|2WRJ|K Chain K, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|K Chain K, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|3I8I|L Chain L, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|2X9S|K Chain K, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|K Chain K, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XTG|K Chain K, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|K Chain K, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
Length = 147
Score = 160 bits (404), Expect = 4e-39, Method: Composition-based stats.
Identities = 76/125 (60%), Positives = 99/125 (79%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG G NIM F K +NA TA+ ++PVEIT+Y DRSFTF+ KTPP
Sbjct: 14 AGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
AS L+ KAAG+EKG+ P ++KVG+IT EQ+ IA +K+PDLN T +E+A R+IAG+A +
Sbjct: 74 ASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARS 133
Query: 938 MGIDI 942
MG+++
Sbjct: 134 MGVEV 138
>pdb|3CJR|B Chain B, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin
Length = 147
Score = 157 bits (398), Expect = 2e-38, Method: Composition-based stats.
Identities = 75/125 (60%), Positives = 98/125 (78%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG G NIM F +NA TA+ ++PVEIT+Y DRSFTF+ KTPP
Sbjct: 14 AGKATPAPPVGPALGQHGANIMEFVAAFNAATANMGDAIVPVEITIYADRSFTFVTKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
AS L+ KAAG+EKG+ P ++KVG+IT EQ+ IA +K+PDLN T +E+A R+IAG+A +
Sbjct: 74 ASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARS 133
Query: 938 MGIDI 942
MG+++
Sbjct: 134 MGVEV 138
>pdb|3CJQ|B Chain B, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|E Chain E, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|H Chain H, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
Length = 146
Score = 157 bits (398), Expect = 2e-38, Method: Composition-based stats.
Identities = 75/125 (60%), Positives = 98/125 (78%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG G NIM F +NA TA+ ++PVEIT+Y DRSFTF+ KTPP
Sbjct: 13 AGKATPAPPVGPALGQHGANIMEFVAAFNAATANMGDAIVPVEITIYADRSFTFVTKTPP 72
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
AS L+ KAAG+EKG+ P ++KVG+IT EQ+ IA +K+PDLN T +E+A R+IAG+A +
Sbjct: 73 ASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARS 132
Query: 938 MGIDI 942
MG+++
Sbjct: 133 MGVEV 137
>pdb|1NKW|G Chain G, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1NWX|G Chain G, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|G Chain G, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1SM1|G Chain G, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|1XBP|G Chain G, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2ZJP|F Chain F, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|F Chain F, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|F Chain F, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|F Chain F, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|F Chain F, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|F Chain F, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|F Chain F, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 144
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 94/126 (74%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG G NIM F K +NA+TADK +IPVEIT+Y DRSFTFI KTPP
Sbjct: 14 AGKATPAPPVGPALGQYGANIMEFTKAFNAQTADKGDAIIPVEITIYADRSFTFITKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
S L+ KAAG+ KGS P + KVGK+ +Q+ IA K+PDLN S+E+A +AGTA +
Sbjct: 74 MSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPDLNAGSVEAAANTVAGTARS 133
Query: 938 MGIDID 943
MG+ ++
Sbjct: 134 MGVTVE 139
>pdb|1PNU|G Chain G, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|G Chain G, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1VOR|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|J Chain J, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 143
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 94/126 (74%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
AGKATPAPPVGPALG G NIM F K +NA+TADK +IPVEIT+Y DRSFTFI KTPP
Sbjct: 14 AGKATPAPPVGPALGQYGANIMEFTKAFNAQTADKGDAIIPVEITIYADRSFTFITKTPP 73
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
S L+ KAAG+ KGS P + KVGK+ +Q+ IA K+PDLN S+E+A +AGTA +
Sbjct: 74 MSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPDLNAGSVEAAANTVAGTARS 133
Query: 938 MGIDID 943
MG+ ++
Sbjct: 134 MGVTVE 139
>pdb|3EGV|B Chain B, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
Length = 146
Score = 143 bits (360), Expect = 5e-34, Method: Composition-based stats.
Identities = 67/116 (57%), Positives = 90/116 (77%)
Query: 827 VGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAA 886
VGPALG G NIM F K +NA TA+ ++PVEIT+Y DRSFTF+ KTPPAS L+ KAA
Sbjct: 22 VGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAA 81
Query: 887 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 942
G+EKG+ P ++KVG+IT EQ+ IA +K+PDLN T +E+A R+IAG+A +MG+++
Sbjct: 82 GLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEV 137
>pdb|1P85|G Chain G, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P86|G Chain G, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AW4|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2AWB|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File Contains
The 50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes And Is
Described In Remark 400.
pdb|2I2T|I Chain I, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2I2V|I Chain I, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2J28|I Chain I, Model Of E. Coli Srp Bound To 70s Rncs
pdb|2QOV|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The First 70s Ribosome.
The Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|2QOX|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOZ|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
First 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QP1|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QAM|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Neomycin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QAO|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBA|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The First 70s Ribosome, With
Gentamicin Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBC|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBE|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBG|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|2QBI|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The First 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2QBK|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And Ribosome
Recycling Factor (Rrf). This File Contains The 50s
Subunit Of The Second 70s Ribosome, With Gentamicin And
Rrf Bound. The Entire Crystal Structure Contains Two 70s
Ribosomes And Is Described In Remark 400.
pdb|2Z4L|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2Z4N|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains Two
70s Ribosomes And Is Described In Remark 400.
pdb|2VHM|I Chain I, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 1 Of 4)
pdb|2VHN|I Chain I, Structure Of Pdf Binding Helix In Complex With The
Ribosome. (Part 2 Of 4)
pdb|2RDO|I Chain I, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|3DEG|H Chain H, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
pdb|3DF2|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The First 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3DF4|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This File
Contains The 50s Subunit Of The Second 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes.
pdb|3EP2|I Chain I, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|I Chain I, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|I Chain I, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIK|I Chain I, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|2WWQ|I Chain I, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|3OFQ|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OFR|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Erthromycin Bound.
pdb|3OFC|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The First 70s Ribosome With Chloramphenicol Bound.
pdb|3OFD|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OFZ|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Clindamycin.
pdb|3OG0|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAS|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAT|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Telithromycin Bound.
pdb|3J01|I Chain I, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3R8S|I Chain I, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3R8T|I Chain I, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3J0T|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|K Chain K, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J0D|G Chain G, Models For The T. Thermophilus Ribosome Recycling Factor
Bound To The E. Coli Post-Termination Complex
pdb|3J19|I Chain I, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(50s Subunit)
Length = 141
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNART-ADKAGYVIPVEITVYDDRSFTFILKTP 876
AG A P+PPVGPALG +GVNIM FCK +NA+T + + G IPV ITVY DRSFTF+ KTP
Sbjct: 14 AGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTP 73
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAA 936
PA+VLL KAAG++ GS P + KVGKI+ QL+ IA K D+ IE+ R I GTA
Sbjct: 74 PAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTAR 133
Query: 937 NMGIDID 943
+MG+ ++
Sbjct: 134 SMGLVVE 140
>pdb|2GYA|G Chain G, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|G Chain G, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
Length = 139
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNART-ADKAGYVIPVEITVYDDRSFTFILKTP 876
AG A P+PPVGPALG +GVNIM FCK +NA+T + + G IPV ITVY DRSFTF+ KTP
Sbjct: 13 AGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTP 72
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAA 936
PA+VLL KAAG++ GS P + KVGKI+ QL+ IA K D+ IE+ R I GTA
Sbjct: 73 PAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTAR 132
Query: 937 NMGIDID 943
+MG+ ++
Sbjct: 133 SMGLVVE 139
>pdb|1VS6|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|1VS8|I Chain I, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described In
Remark 400.
pdb|3E1B|5 Chain 5, Structure Of The 50s Subunit Of E. Coli Ribosome In
Pre-Accommodation State
pdb|3E1D|5 Chain 5, Structure Of The 50s Subunit Of E. Coli Ribosome In
Post-Accommodation State
pdb|3I1N|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1P|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1R|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1T|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I20|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I22|I Chain I, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KCR|I Chain I, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found
In Pdb Entry 3kc4
pdb|1VT2|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3ORB|I Chain I, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The First
70s Ribosome Bound To Cem-101.
pdb|3IZT|J Chain J, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|J Chain J, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3SGF|I Chain I, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
pdb|3UOS|I Chain I, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
pdb|4GAR|I Chain I, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAU|I Chain I, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 142
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 91/127 (71%), Gaps = 1/127 (0%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNART-ADKAGYVIPVEITVYDDRSFTFILKTP 876
AG A P+PPVGPALG +GVNIM FCK +NA+T + + G IPV ITVY DRSFTF+ KTP
Sbjct: 15 AGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTP 74
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAA 936
PA+VLL KAAG++ GS P + KVGKI+ QL+ IA K D+ IE+ R I GTA
Sbjct: 75 PAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTAR 134
Query: 937 NMGIDID 943
+MG+ ++
Sbjct: 135 SMGLVVE 141
>pdb|2BCW|A Chain A, Coordinates Of The N-Terminal Domain Of Ribosomal Protein
L11,C-Terminal Domain Of Ribosomal Protein L7L12 AND A
Portion Of The G' Domain Of Elongation Factor G, As
Fitted Into Cryo-Em Map Of An Escherichia Coli 70sEf-
GGdpFusidic Acid Complex
Length = 65
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 51/58 (87%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKT 875
AGKATPAPPVGPALG GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KT
Sbjct: 8 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKT 65
>pdb|3J21|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 164
Score = 93.6 bits (231), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 1/128 (0%)
Query: 817 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYD-DRSFTFILKT 875
E GKATP PP+GPA+G G+N+ N T D AG +PV+I V + F +
Sbjct: 11 EGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKDFAGMQVPVKIIVDPVTKQFEIEVGV 70
Query: 876 PPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTA 935
PP S L+ K G+EKGS +PK VG +T+EQ+ IA K + ++++A + + GTA
Sbjct: 71 PPTSQLIKKELGLEKGSGEPKHNIVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTA 130
Query: 936 ANMGIDID 943
+MG+ ++
Sbjct: 131 LSMGVTVE 138
>pdb|2FTC|G Chain G, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
pdb|3IY9|G Chain G, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
Length = 145
Score = 92.8 bits (229), Expect = 7e-19, Method: Composition-based stats.
Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTP 876
AG A P PP+GP LG +GV+I FCK++N RT D K G +P +I V DR+F + P
Sbjct: 14 AGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQP 73
Query: 877 PASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPD----LNCTSIESAMRIIA 932
S L AAG+EKG++ ++ G +T++ + IA K D L + S +R I
Sbjct: 74 TVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSII 133
Query: 933 GTAANMGIDI 942
G+A ++GI +
Sbjct: 134 GSARSLGIRV 143
>pdb|1HC8|A Chain A, Crystal Structure Of A Conserved Ribosomal Protein-Rna
Complex
pdb|1HC8|B Chain B, Crystal Structure Of A Conserved Ribosomal Protein-Rna
Complex
Length = 76
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 57/75 (76%)
Query: 869 FTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAM 928
FTFI KTPPA+VLL KAAG+E GS +P + KV I +++R IA K+PDLN SIE+AM
Sbjct: 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60
Query: 929 RIIAGTAANMGIDID 943
R+I GTA +MGI ++
Sbjct: 61 RMIEGTARSMGIVVE 75
>pdb|1Y39|A Chain A, Co-Evolution Of Protein And Rna Structures Within A Highly
Conserved Ribosomal Domain
pdb|1Y39|B Chain B, Co-Evolution Of Protein And Rna Structures Within A Highly
Conserved Ribosomal Domain
Length = 76
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/75 (60%), Positives = 57/75 (76%)
Query: 869 FTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAM 928
FTFI KTPPA+VLL KAAG+E GS +P + KV I +++R IA K+PDLN SIE+AM
Sbjct: 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60
Query: 929 RIIAGTAANMGIDID 943
R+I GTA NMGI ++
Sbjct: 61 RMIEGTARNMGIVVE 75
>pdb|1ACI|A Chain A, L11 Ribosomal Protein Rna Binding Domain, Nmr, 20
Structures
pdb|1FOW|A Chain A, Nmr Structure Of L11-C76, The C-Terminal Domain Of 50s
Ribosomal Protein L11, Minimized Average Structure
pdb|1FOX|A Chain A, Nmr Structure Of L11-C76, The C-Terminal Domain Of 50s
Ribosomal Protein L11, 33 Structures
pdb|1FOY|A Chain A, The Rna Binding Domain Of Ribosomal Protein L11: Three-
Dimensional Structure Of The Rna-Bound Form Of The
Protein, Nmr, Minimized Average Structure
pdb|2FOW|A Chain A, The Rna Binding Domain Of Ribosomal Protein L11: Three-
Dimensional Structure Of The Rna-Bound Form Of The
Protein, Nmr, 26 Structures
Length = 76
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 56/75 (74%)
Query: 869 FTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAM 928
TFI KTPPA+VLL KAAG+E GS +P + KV I +++R IA K+PDLN SIE+AM
Sbjct: 1 MTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60
Query: 929 RIIAGTAANMGIDID 943
R+I GTA +MGI ++
Sbjct: 61 RMIEGTARSMGIVVE 75
>pdb|2OTJ|I Chain I, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
Length = 161
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 73/126 (57%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
G+A P PP+GP LG V++ A ++ N +TA G +PV + DD SF + PP
Sbjct: 10 GGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPP 69
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
+ L+ AG E GS +P++ V ++++Q++ IA +K PDL + +A + + GT +
Sbjct: 70 TAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTS 129
Query: 938 MGIDID 943
+G+ I+
Sbjct: 130 LGVTIE 135
>pdb|1S72|I Chain I, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|I Chain I, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|I Chain I, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|I Chain I, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|I Chain I, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|I Chain I, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|I Chain I, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|I Chain I, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|I Chain I, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|I Chain I, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|I Chain I, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|I Chain I, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|I Chain I, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|I Chain I, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|I Chain I, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|I Chain I, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|I Chain I, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|I Chain I, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|I Chain I, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|I Chain I, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTL|I Chain I, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|I Chain I, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|I Chain I, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|I Chain I, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|I Chain I, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CMA|I Chain I, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|I Chain I, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|I Chain I, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|I Chain I, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|I Chain I, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
Length = 162
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 73/126 (57%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPP 877
G+A P PP+GP LG V++ A ++ N +TA G +PV + DD SF + PP
Sbjct: 11 GGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPP 70
Query: 878 ASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAAN 937
+ L+ AG E GS +P++ V ++++Q++ IA +K PDL + +A + + GT +
Sbjct: 71 TAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTS 130
Query: 938 MGIDID 943
+G+ I+
Sbjct: 131 LGVTIE 136
>pdb|3CJS|B Chain B, Minimal Recognition Complex Between Prma And Ribosomal
Protein L11
pdb|3CJS|C Chain C, Minimal Recognition Complex Between Prma And Ribosomal
Protein L11
Length = 72
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 46/59 (77%)
Query: 818 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTP 876
AGKATPAPPVGPALG G NIM F K +NA TA+ ++PVEIT+Y DRSFTF+ KTP
Sbjct: 14 AGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTP 72
>pdb|1QA6|A Chain A, Crystal Structure Of A Conserved Ribosomal Protein-Rna
Complex
pdb|1QA6|B Chain B, Crystal Structure Of A Conserved Ribosomal Protein-Rna
Complex
pdb|1C04|C Chain C, Identification Of Known Protein And Rna Structures In A 5
A Map Of The Large Ribosomal Subunit From Haloarcula
Marismortui
Length = 67
Score = 80.1 bits (196), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/67 (59%), Positives = 51/67 (76%)
Query: 874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAG 933
KTPPA+VLL KAAG+E GS +P + KV I +++R IA K+PDLN SIE+AMR+I G
Sbjct: 1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEG 60
Query: 934 TAANMGI 940
TA +MGI
Sbjct: 61 TARSMGI 67
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DIVAPGV++ S YP GS YA L+GTSM+ PHVAG+AAL+K + WS IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGVAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
TA TG N++ G EA
Sbjct: 245 KNTA--TGLGNTNLYGSGLVNAEA 266
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DIVAPGV++ S YP GS YA L+GTSM+ PHVAG AAL+K + WS IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
TA+ G+ N++ G EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DIVAPGV++ S YP GS YA L+GTSM+ PHVAG AAL+K + WS IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
TA+ G+ N++ G EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DIVAPGV++ S YP GS YA L+GTSM+ PHVAG AAL+K + WS IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
TA+ G+ N++ G EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DIVAPGV++ S YP GS YA L+GTSM+ PHVAG AAL+K + WS IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
TA+ G+ N++ G EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DIVAPGV++ S YP GS YA L+GTSM+ PHVAG AAL+K + WS IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
TA+ G+ N++ G EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DIVAPGV++ S YP GS YA L+GT M+ PHVAG AAL+K + WS IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
TA+ G+ N++ G EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP---IGSKDIQGYALLSGTSMSCPHVA 527
+ FSSRGP + + LKP++VAPG I++A +G Y GT+M+ PHVA
Sbjct: 309 ITDFSSRGPTADNR--LKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVA 366
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEA 573
GIAAL+ H W+P +++AL+ TA D + G+ R A
Sbjct: 367 GIAALLLQAHPSWTPDKVKTALIETADIVKPDEIADIAYGAGRVNA 412
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 243 ADVLKAFDKAIHD----GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
+D++ D A+ + G+ V+++S+G+ D DS++ +A G+ VV +A
Sbjct: 223 SDIINGVDWAVQNKDKYGIKVINLSLGSS----QSSDGTDSLSQAVNNAWDAGLVVVVAA 278
Query: 299 GNDGPVAQTIVN--TAPWIITVGA 320
GN GP T+ + A +ITVGA
Sbjct: 279 GNSGPNKYTVGSPAAASKVITVGA 302
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DIVAPGV++ S YP GS YA L+GT M+ PHVAG AAL+K + WS IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
TA+ G+ N++ G EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DIVAPGV++ S YP GS YA L+GT M+ PHVAG AAL+K + WS IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
TA+ G+ N++ G EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 8/84 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DIVAPGV++ S YP GS YA L+GT M+ PHVAG AAL+K + WS IR+ L
Sbjct: 191 DIVAPGVNVQSTYP--GST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 550 VTTASQTGTDGMNIFEEGSTRKEA 573
TA+ G+ N++ G EA
Sbjct: 245 KNTATSLGS--TNLYGSGLVNAEA 266
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + A FSS GP + D++APGV I S P G K Y LSGTSM+ PHVA
Sbjct: 174 SNQRAPFSSVGP--------ELDVMAPGVSICSTLP--GGK----YGALSGTSMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L TA++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTATKLG 249
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 154/376 (40%), Gaps = 61/376 (16%)
Query: 243 ADVLKAFDKAIHDGVD----VLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
AD + + +AI D V+ V+++S GN +Y + D +A +KG+++V+SA
Sbjct: 140 ADYARNYAQAIRDAVNLGAKVINMSFGN--AALAYANLPDETKKAFDYAKSKGVSIVTSA 197
Query: 299 GNDG--------PVAQT----IVNT---APWIITVGATTIDRAFPTAITL--GNHQ---- 337
GND P+A +V T A +TV + + D+ T+ +HQ
Sbjct: 198 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEM 257
Query: 338 -VLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQ 396
VL + K Y+ R D D + GKI L R D
Sbjct: 258 PVLSTNRFEPNKAYD----YAYANR-GMKEDDFKDVK----------GKIALI-ERGDI- 300
Query: 397 DIQSAAISVTQAGGVGLIYAQFHTDG----LDSCNLIPCIKVNYEVGTQILSYIRRARSP 452
D + + +AG VG++ G L + + +P ++ + G L ++
Sbjct: 301 DFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG---LLLKDNSKKT 357
Query: 453 IAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG 512
I ++P+ V+ +++ FSS G + +KPDI APG DILS+
Sbjct: 358 ITFNATPK-VLPTASDTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVAN------NK 408
Query: 513 YALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKE 572
YA LSGTSMS P VAGI L++ + P S + A + + +
Sbjct: 409 YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAY 468
Query: 573 ADPFDIGGGHVNPNKA 588
P G G V+ KA
Sbjct: 469 FSPRQQGAGAVDAKKA 484
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIXSTLP--GNK----YGAYSGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + A FSS GP + D++APGV I S P G K Y LSGT+M+ PHVA
Sbjct: 174 SNQRAPFSSVGP--------ELDVMAPGVSICSTLP--GGK----YGALSGTAMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L TA++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTATKLG 249
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGTSM+ PHVA
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSICSTLP--GNK----YGAKSGTSMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTTTKLG 249
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGTSM+ PHVA
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSICSTLP--GNK----YGAKSGTSMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTTTKLG 249
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSICSTLP--GNK----YGAKSGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSICSTLP--GNK----YGAKSGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I+S P G+K Y SGT+M+ PHVA
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSIVSTLP--GNK----YGAKSGTAMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTTTKLG 249
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I+S P G+K Y SGT+M+ PHVA
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSIVSTLP--GNK----YGAKSGTAMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTTTKLG 249
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAKSGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIXSTLP--GNK----YGAYSGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T + G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTYLG 258
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y +GTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLQNTTTKLG 258
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y +GTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y +GTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y +GTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLQNTTTKLG 258
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y +GTSM+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGT M+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYSGTXMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGT M+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYSGTXMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGT M+ PHVA
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSICSTLP--GNK----YGAKSGTXMASPHVA 219
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 220 GAAALILSKHPNWTNTQVRSSLENTTTKLG 249
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGT M+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAKSGTXMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y SGT M+ PHVA
Sbjct: 171 SNQRASFSSVGP--------ELDVMAPGVSIWSTLP--GNK----YGAKSGTXMASPHVA 216
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 217 GAAALILSKHPNWTNTQVRSSLENTTTKLG 246
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y +GT M+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTXMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y +GT M+ PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTXMASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS GP + D++APGV I S P G+K Y +GTS + PHVA
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIQSTLP--GNK----YGAYNGTSXASPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H +W+ +RS+L T ++ G
Sbjct: 229 GAAALILSKHPNWTNTQVRSSLENTTTKLG 258
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFSS G + +++APG + S YP YA L+GTSM+ PHVAG AA
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 232
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
LI S H + S + +R+ L +TA+ G+
Sbjct: 233 LILSKHPNLSASQVRNRLSSTATYLGS 259
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFSS G + +++APG + S YP YA L+GTSM+ PHVAG AA
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 232
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
LI S H + S + +R+ L +TA+ G+
Sbjct: 233 LILSKHPNLSASQVRNRLSSTATYLGS 259
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFSS G + +++APG + S YP YA L+GTSM+ PHVAG AA
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
LI S H + S + +R+ L +TA+ G+
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYLGS 258
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFSS G + +++APG + S YP YA L+GTSM+ PHVAG AA
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
LI S H + S + +R+ L +TA+ G+
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYLGS 258
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFSS G + +++APG + S YP YA L+GTSM+ PHVAG AA
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
LI S H + S + +R+ L +TA+ G+
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYLGS 258
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFSS G + +++APG + S YP YA L+GTSM+ PHVAG AA
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTSMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
LI S H + S + +R+ L +TA+ G+
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYLGS 258
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFSS G + +++APG + S YP YA L+GT M+ PHVAG AA
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTYP------TNTYATLNGTXMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
LI S H + S + +R+ L +TA+ G+
Sbjct: 232 LILSKHPNLSASQVRNRLSSTATYLGS 258
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 19/92 (20%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
R+ASFS+ G D+VAPGVDI+S G++ YA +SGTSM+ PHVAG+
Sbjct: 190 RLASFSNYGT--------WVDVVAPGVDIVS--TITGNR----YAYMSGTSMASPHVAGL 235
Query: 530 AALIKSLHRDWSPAAIRSALVTTA---SQTGT 558
AAL+ S R+ IR A+ TA S TGT
Sbjct: 236 AALLASQGRN--NIEIRQAIEQTADKISGTGT 265
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFSS G + D++APGV I S P Y +GTSM+ PHVAG AA
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSIQSTLPG------GTYGAYNGTSMATPHVAGAAA 232
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGT 558
LI S H W+ A +R L +TA+ G+
Sbjct: 233 LILSKHPTWTNAQVRDRLESTATYLGS 259
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFSS G + +++APGV + S YP Y L+GTSM+ PHVAG AA
Sbjct: 186 ASFSSVGS--------ELEVMAPGVSVYSTYPS------NTYTSLNGTSMASPHVAGAAA 231
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTG 557
LI S + S + +R+ L +TA+ G
Sbjct: 232 LILSKYPTLSASQVRNRLSSTATNLG 257
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 11/72 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
D+ APG I S YP YA LSGTSM+ PHVAG+A L+ S R S + IR+A+
Sbjct: 201 DVAAPGSSIYSTYP------TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAI 252
Query: 550 VTTA---SQTGT 558
TA S TGT
Sbjct: 253 ENTADKISGTGT 264
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS G + D++APGV I S P Y +GT M+ PHVA
Sbjct: 183 SNQRASFSSAGS--------ELDVMAPGVSIQSTLPG------GTYGAYNGTCMATPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H W+ A +R L +TA+ G
Sbjct: 229 GAAALILSKHPTWTNAQVRDRLESTATYLG 258
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 14/90 (15%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVA 527
S + ASFSS G + D++APGV I S P Y +GT M+ PHVA
Sbjct: 183 SNQRASFSSVGS--------ELDVMAPGVSIQSTLPG------GTYGAYNGTXMATPHVA 228
Query: 528 GIAALIKSLHRDWSPAAIRSALVTTASQTG 557
G AALI S H W+ A +R L +TA+ G
Sbjct: 229 GAAALILSKHPTWTNAQVRDRLESTATYLG 258
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 471 VASFSSRGPN-SMSPAVLKPDIVAPGVDILSAYPPIGSKDI-QGYALLSGTSMSCPHVAG 528
V + +SRG S S + D+ APG DILS + + Y+ ++GTSM+ PHV+G
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSG 284
Query: 529 IAALI----KSLHRDWSPAAIRSALVTTAS 554
+AAL+ S++++ +PA ++ LV+T S
Sbjct: 285 VAALVISAANSVNKNLTPAELKDVLVSTTS 314
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 471 VASFSSRGPN-SMSPAVLKPDIVAPGVDILSAYPPIGSKDI-QGYALLSGTSMSCPHVAG 528
V + +SRG S S + D+ APG DILS + + Y+ ++GTSM+ PHV+G
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSG 284
Query: 529 IAALI----KSLHRDWSPAAIRSALVTTAS 554
+AAL+ S++++ +PA ++ LV+T S
Sbjct: 285 VAALVISAANSVNKNLTPAELKDVLVSTTS 314
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 471 VASFSSRGPN-SMSPAVLKPDIVAPGVDILSAYPPIGSKDI-QGYALLSGTSMSCPHVAG 528
V + +SRG S S + D+ APG DILS + + Y+ ++GTSM+ PHV+G
Sbjct: 225 VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSG 284
Query: 529 IAALI----KSLHRDWSPAAIRSALVTTAS 554
+AAL+ S++++ +PA ++ LV+T S
Sbjct: 285 VAALVISAANSVNKNLTPAELKDVLVSTTS 314
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 142/369 (38%), Gaps = 47/369 (12%)
Query: 243 ADVLKAFDKAIHD----GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
AD + + +AI D G V++ S GN +Y + D +A +KG+++V+SA
Sbjct: 131 ADYARNYAQAIRDAINLGAKVINXSFGN--AALAYANLPDETKKAFDYAKSKGVSIVTSA 188
Query: 299 GND----GPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT 354
GND G + + + + D A + Q+ +
Sbjct: 189 GNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEX 248
Query: 355 GLTYSERIAFDPDSAND---CRQGSLNATL--AAGKIILCFSRPDTQDIQSAAISVTQAG 409
+ + R F+P+ A D +G+ GKI L R D D + +AG
Sbjct: 249 PVLSTNR--FEPNKAYDYAYANRGTKEDDFKDVKGKIALI-ERGDI-DFKDKIAKAKKAG 304
Query: 410 GVG-LIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVS 468
VG LIY D D I V+ ++I R + K +P+ I +
Sbjct: 305 AVGVLIY-----DNQDKGFPIELPNVDQXPA----AFISRKDGLLLK-DNPQKTITFNAT 354
Query: 469 PRV---------ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGT 519
P+V + FSS G + +KPDI APG DILS+ YA LSGT
Sbjct: 355 PKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSVAN------NKYAKLSGT 406
Query: 520 SMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIG 579
S S P VAGI L++ + P S + A + + + P G
Sbjct: 407 SXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQG 466
Query: 580 GGHVNPNKA 588
G V+ KA
Sbjct: 467 AGAVDAKKA 475
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 42/72 (58%), Gaps = 11/72 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
D+ APG I S YP YA LSGTSM+ PHVAG+A L+ S R S + IR+A+
Sbjct: 201 DVAAPGSWIYSTYP------TSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAI 252
Query: 550 VTTA---SQTGT 558
TA S TGT
Sbjct: 253 ENTADKISGTGT 264
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
D L I Y G I+ S A SP + PE + +G + S +ASFS+R
Sbjct: 240 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 297
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH-- 537
+P++ APGVDILS YP Y L GT+M+ PHV+G+ ALI++ +
Sbjct: 298 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQ 343
Query: 538 -----------RDWSPAAIRSALVTTASQTGTDGMN 562
D S +R L TA G G +
Sbjct: 344 KYGKILPVGTFDDISKNTVRGILHITADDLGPTGWD 379
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
D L I Y G I+ S A SP + PE + +G + S +ASFS+R
Sbjct: 240 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 297
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH-- 537
+P++ APGVDILS YP Y L GT+M+ PHV+G+ ALI++ +
Sbjct: 298 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQ 343
Query: 538 -----------RDWSPAAIRSALVTTASQTGTDGMN 562
D S +R L TA G G +
Sbjct: 344 KYGKILPVGTFDDISKNTVRGILHITADDLGPTGWD 379
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
D L I Y G I+ S A SP + PE + +G + S +ASFS+R
Sbjct: 240 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 297
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH-- 537
+P++ APGVDILS YP Y L GT+M+ PHV+G+ ALI++ +
Sbjct: 298 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQ 343
Query: 538 -----------RDWSPAAIRSALVTTASQTGTDGMN 562
D S +R L TA G G +
Sbjct: 344 KYGKILPVGTFDDISKNTVRGILHITADDLGPTGWD 379
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
D L I Y G I+ S A SP + PE + +G + S +ASFS+R
Sbjct: 237 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 294
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH-- 537
+P++ APGVDILS YP Y L GT+M+ PHV+G+ ALI++ +
Sbjct: 295 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQ 340
Query: 538 -----------RDWSPAAIRSALVTTASQTGTDGMN 562
D S +R L TA G G +
Sbjct: 341 KYGKILPVGTFDDISKNTVRGILHITADDLGPTGWD 376
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 18/91 (19%)
Query: 449 ARSPIAKLSSPETV-IGDLVS-PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG 506
A SP + PE + +G + S +ASFS+R +P++ APGVDILS YP
Sbjct: 189 APSPSYPAAYPEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPD-- 236
Query: 507 SKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
Y L GT+M+ PHV+G+ ALI++ +
Sbjct: 237 ----DSYETLMGTAMATPHVSGVVALIQAAY 263
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
D L I Y G I+ S A SP + PE + +G + S +ASFS+R
Sbjct: 240 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 297
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
+P++ APGVDILS YP Y L GT+M+ PHV+G+ ALI++ +
Sbjct: 298 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 18/91 (19%)
Query: 449 ARSPIAKLSSPETV-IGDLVS-PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG 506
A SP + PE + +G + S +ASFS+R +P++ APGVDILS YP
Sbjct: 187 APSPSYPAAYPEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPD-- 234
Query: 507 SKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
Y L GT+M+ PHV+G+ ALI++ +
Sbjct: 235 ----DSYETLMGTAMATPHVSGVVALIQAAY 261
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
D L I Y G I+ S A SP + PE + +G + S +ASFS+R
Sbjct: 171 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 228
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
+P++ APGVDILS YP Y L GT+M+ PHV+G+ ALI++ +
Sbjct: 229 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
Query: 424 DSCNLIPCIKVNYEVGTQIL--SYIRRARSPIAKLSSPETV-IGDLVS-PRVASFSSRGP 479
D L I Y G I+ S A SP + PE + +G + S +ASFS+R
Sbjct: 171 DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNR-- 228
Query: 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
+P++ APGVDILS YP Y L GT+M+ PHV+G+ ALI++ +
Sbjct: 229 --------QPEVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 18/91 (19%)
Query: 449 ARSPIAKLSSPETV-IGDLVS-PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG 506
A SP + PE + +G + S +ASFS+R +P++ APGVDILS YP
Sbjct: 187 APSPSYPAAYPEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPD-- 234
Query: 507 SKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
Y L GT M+ PHV+G+ ALI++ +
Sbjct: 235 ----DSYETLMGTXMATPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 18/91 (19%)
Query: 449 ARSPIAKLSSPETV-IGDLVS-PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG 506
A SP + PE + +G + S +ASFS+R +P++ APGVDILS YP
Sbjct: 187 APSPSYPAAYPEVIAVGAIDSNDNIASFSNR----------QPEVSAPGVDILSTYPD-- 234
Query: 507 SKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
Y L GT M+ PHV+G+ ALI++ +
Sbjct: 235 ----DSYETLMGTCMATPHVSGVVALIQAAY 261
>pdb|3G4S|I Chain I, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|I Chain I, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|I Chain I, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
Length = 70
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 876 PPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTA 935
PP + L+ AG E GS +P++ V ++++Q++ IA +K PDL + +A + + GT
Sbjct: 3 PPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTC 62
Query: 936 ANMGIDID 943
++G+ I+
Sbjct: 63 TSLGVTIE 70
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSL-----HRDWSPAA 544
DIVAPGV I S Y GYA LSGT+M+ PHVAG ALI +L R S
Sbjct: 226 DIVAPGVGIKSTYLD------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETE 279
Query: 545 IRSALVTTASQTG 557
I + LV A+ G
Sbjct: 280 IYAQLVRRATPIG 292
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSL-----HRDWSPAA 544
DIVAPGV I S Y GYA LSGT+M+ PHVAG ALI +L R S
Sbjct: 226 DIVAPGVGIKSTYLD------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETE 279
Query: 545 IRSALVTTASQTG 557
I + LV A+ G
Sbjct: 280 IYAQLVRRATPIG 292
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSL-----HRDWSPAA 544
DIVAPGV I S Y GYA LSGT+M+ PHVAG ALI +L R S
Sbjct: 226 DIVAPGVGIKSTYLD------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETE 279
Query: 545 IRSALVTTASQTG 557
I + LV A+ G
Sbjct: 280 IYAQLVRRATPIG 292
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSL-----HRDWSPAA 544
DIVAPGV I S Y GYA LSGT+M+ PHVAG ALI +L R S
Sbjct: 208 DIVAPGVGIKSTYLD------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETE 261
Query: 545 IRSALVTTASQTG 557
I + LV A+ G
Sbjct: 262 IYAQLVRRATPIG 274
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG------SKDIQGYALLSGTSMSC 523
VA FSSRGP +KPD++APG ILSA + + YA + GTSM+
Sbjct: 201 HVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 524 PHVAGIAA-----LIKSLHRDWSPAAIRSALVTTASQTG 557
P VAG A +K+ P+ +++AL+ A+ G
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG 297
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 470 RVASFSSRGPNSMSP--AVLKPD--IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPH 525
RVA FSSRG + + K D I APG + S + GYA +SGTSM+ PH
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFD------GGYATISGTSMASPH 254
Query: 526 VAGIAALIKSLHRDWSPAAIRSALVTTAS 554
AG+AA I + S +R L T AS
Sbjct: 255 AAGLAAKIWAQSPAASNVDVRGELQTRAS 283
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 14/77 (18%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
R +SFS+ G +VL DI PG DILS + ++ I SGTSM+ PHVAG+
Sbjct: 188 RRSSFSNYG------SVL--DIFGPGTDILSTWIGGSTRSI------SGTSMATPHVAGL 233
Query: 530 AALIKSLHRDWSPAAIR 546
AA + +L + + +A R
Sbjct: 234 AAYLMTLGKTTAASACR 250
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 480 NSMSPAVLKP-------DIVAPGVDI-----------LSAYPPIGSKDIQGYALLSGTSM 521
NS P + P DI P V + L + ++ Q Y +GTSM
Sbjct: 311 NSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSM 370
Query: 522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTA 553
+ PHV+G+A L+ S H + S + +R+AL TA
Sbjct: 371 ATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG------SKDIQGYALLSGTSMSCP 524
VA FSSRGP +KPD++APG ILSA + + YA GTS + P
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXGGTSXATP 259
Query: 525 HVAGIAA-----LIKSLHRDWSPAAIRSALVTTASQTG 557
VAG A +K+ P+ +++AL+ A+ G
Sbjct: 260 IVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG 297
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAAL----IKSLHRDWSPAAIR 546
+ APG I S SK L +GTS + PHVAG AL +K + ++SP +I+
Sbjct: 437 VCAPGGAIASVPQFTXSKS----QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIK 492
Query: 547 SALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFL 606
A+ TA++ G DPF G G +N KA + + ++ ++F
Sbjct: 493 RAISVTATKLGY--------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFS 538
Query: 607 CFMGHN 612
+G+N
Sbjct: 539 VRVGNN 544
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
D+ APG I SA+ GY +SGTSM+ PHVAG+AAL + +P + L
Sbjct: 196 DLFAPGSQIKSAWYD------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLL 249
Query: 550 VTTASQ 555
+ AS+
Sbjct: 250 NSRASE 255
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 14/77 (18%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
R +SFS+ G +VL DI PG ILS + ++ I SGTSM+ PHVAG+
Sbjct: 188 RRSSFSNYG------SVL--DIFGPGTSILSTWIGGSTRSI------SGTSMATPHVAGL 233
Query: 530 AALIKSLHRDWSPAAIR 546
AA + +L + + +A R
Sbjct: 234 AAYLMTLGKTTAASACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 14/77 (18%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
R +SFS+ G +VL DI PG ILS + ++ I SGTSM+ PHVAG+
Sbjct: 188 RRSSFSNYG------SVL--DIFGPGTSILSTWIGGSTRSI------SGTSMATPHVAGL 233
Query: 530 AALIKSLHRDWSPAAIR 546
AA + +L + + +A R
Sbjct: 234 AAYLMTLGKTTAASACR 250
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG------------YALLS 517
RVA FSSR S V + APGV ILS P S +G Y
Sbjct: 327 RVAGFSSR-----SDGV---SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQ 378
Query: 518 GTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTA 553
GTSM+ PHV G+ A++ + P IR L TA
Sbjct: 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA 414
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 470 RVASFSSRGP-NSMSPAVLKP---DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPH 525
RVA +SSRG ++ V++ +I APG + S + GY +SGTSM+ PH
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN------GGYNTISGTSMATPH 255
Query: 526 VAGIAALIKSLHRDWSPAAIRSAL 549
V+G+AA I + + S +RS L
Sbjct: 256 VSGLAAKIWAENPSLSNTQLRSNL 279
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
DI APG I S++ S +SGTSM+ PHVAG+AAL + + SPA + + L
Sbjct: 198 DIYAPGSSITSSWYTSNSA----TNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLL 253
Query: 550 VTTAS 554
T A+
Sbjct: 254 KTRAT 258
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 485 AVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH----RDW 540
A K I+APG DIL A P G LSGTS + P V+G+AAL+ SL
Sbjct: 195 AYQKQGILAPGKDILGAKPN------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKP 248
Query: 541 SPAAIRSALVTTAS 554
P +++AL+ +A+
Sbjct: 249 DPQKVKNALLASAT 262
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 491 IVAPGVDILSAYP-----PIGSKDIQGYALLSGTSMSCPHVAGIAALI----KSLHRDWS 541
+ APG +ILS P+ S Y + +GTSM+ PHV+G+AAL+ S+ + +
Sbjct: 247 LAAPGTNILSTIDVGQAGPVRSS----YGMKAGTSMAAPHVSGVAALVISAANSIGKTLT 302
Query: 542 PAAIRSALVTTASQ 555
P+ + LV T S+
Sbjct: 303 PSELSDILVRTTSR 316
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 491 IVAPGVDILSAYP-----PIGSKDIQGYALLSGTSMSCPHVAGIAALI----KSLHRDWS 541
+ APG +ILS P+ S Y + +GTSM+ PHV+G+AAL+ S+ + +
Sbjct: 247 LAAPGTNILSTIDVGQAGPVRSS----YGMKAGTSMAAPHVSGVAALVISAANSIGKTLT 302
Query: 542 PAAIRSALVTTASQ 555
P+ + LV T S+
Sbjct: 303 PSELSDILVRTTSR 316
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 454 AKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGY 513
A+++ TV S ASFS+ G D+ APG I SA+ + D
Sbjct: 168 ARVAEALTVGATTSSDARASFSNYGS--------CVDLFAPGASIPSAWY---TSDTA-T 215
Query: 514 ALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554
L+GTSM+ PHVAG+AAL + +PA++ SA++ A+
Sbjct: 216 QTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGAT 256
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 470 RVASFSSRGP-NSMSPAVLKP---DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPH 525
RVA +SSRG ++ V++ +I APG + S + GY +SGT M+ PH
Sbjct: 202 RVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN------GGYNTISGTXMATPH 255
Query: 526 VAGIAALIKSLHRDWSPAAIRSAL 549
V+G+AA I + + S +RS L
Sbjct: 256 VSGLAAKIWAENPSLSNTQLRSNL 279
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 14/84 (16%)
Query: 474 FSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALI 533
FS+ G N+ K I+APG +IL A P + L+GTSM+ P + GI+AL+
Sbjct: 256 FSNWGGNNT-----KEGILAPGEEILGAQP-----CTEEPVRLTGTSMAAPVMTGISALL 305
Query: 534 KSLH----RDWSPAAIRSALVTTA 553
SL + A+R+AL+ TA
Sbjct: 306 MSLQVQQGKPVDAEAVRTALLKTA 329
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 14/84 (16%)
Query: 474 FSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALI 533
FS+ G N+ K I+APG +IL A P + L+GTSM+ P + GI+AL+
Sbjct: 256 FSNWGGNNT-----KEGILAPGEEILGAQP-----CTEEPVRLTGTSMAAPVMTGISALL 305
Query: 534 KSLH----RDWSPAAIRSALVTTA 553
SL + A+R+AL+ TA
Sbjct: 306 MSLQVQQGKPVDAEAVRTALLKTA 329
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 14/84 (16%)
Query: 474 FSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALI 533
FS+ G N+ K I+APG +IL A P + L+GTSM+ P + GI+AL+
Sbjct: 238 FSNWGGNNT-----KEGILAPGEEILGAQP-----CTEEPVRLTGTSMAAPVMTGISALL 287
Query: 534 KSLH----RDWSPAAIRSALVTTA 553
SL + A+R+AL+ TA
Sbjct: 288 MSLQVQQGKPVDAEAVRTALLKTA 311
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 37.4 bits (85), Expect = 0.037, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKS--LHRDWS--PAAIR 546
I+APG DIL A P G++ LSGTS + P V+G+AAL+ S + R + P +R
Sbjct: 207 ILAPGEDILGAKPGGGTER------LSGTSFATPIVSGVAALLLSEQVRRGETPDPQKVR 260
Query: 547 SALVTTA 553
L+ +A
Sbjct: 261 QLLLQSA 267
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 37.4 bits (85), Expect = 0.043, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKS--LHRDWS--PAAIR 546
I+APG DIL A P G++ LSGTS + P V+G+AAL+ S + R + P +R
Sbjct: 198 ILAPGEDILGAKPGGGTER------LSGTSFATPIVSGVAALLLSEQVRRGETPDPQKVR 251
Query: 547 SALVTTA 553
L+ +A
Sbjct: 252 QLLLQSA 258
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 36.2 bits (82), Expect = 0.083, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKS--LHRDWS--PAAIR 546
I+APG DIL A P G++ LSGT+ + P V+G+AAL+ S + R + P +R
Sbjct: 188 ILAPGEDILGAKPGGGTER------LSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVR 241
Query: 547 SALVTTA 553
L+ +A
Sbjct: 242 QLLLQSA 248
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
DI APG I S + IG + +SGTSM+ PH+AG+AA + L
Sbjct: 201 DIFAPGTSITSTW--IGGRT----NTISGTSMATPHIAGLAAYLFGLE 242
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH 537
DI APG +ILS + IG +SGTSM+ PH+ G+ A + L
Sbjct: 203 DIFAPGSNILSTW--IGGTT----NTISGTSMATPHIVGLGAYLAGLE 244
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 637 NLPSITIPNLHNNETVTVTRKVTNVGQINSAY-----EALVEAPYGVNMTVE--PEVISF 689
++P I + N+ETV KVT VG I A E A GV +T E P +I+
Sbjct: 640 DVPGSNITGICNDETVFAKDKVTCVGHIIGAVVADTPEHTQRAAQGVKITYEELPAIITI 699
Query: 690 NMTIKILSF 698
IK SF
Sbjct: 700 EDAIKNNSF 708
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 637 NLPSITIPNLHNNETVTVTRKVTNVGQINSAY-----EALVEAPYGVNMTVE--PEVISF 689
++P I + N+ETV KVT VG I A E A GV +T E P +I+
Sbjct: 640 DVPGSNITGICNDETVFAKDKVTCVGHIIGAVVADTPEHTQRAAQGVKITYEELPAIITI 699
Query: 690 NMTIKILSF 698
IK SF
Sbjct: 700 EDAIKNNSF 708
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,715,597
Number of Sequences: 62578
Number of extensions: 1003324
Number of successful extensions: 2480
Number of sequences better than 100.0: 142
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2172
Number of HSP's gapped (non-prelim): 236
length of query: 954
length of database: 14,973,337
effective HSP length: 108
effective length of query: 846
effective length of database: 8,214,913
effective search space: 6949816398
effective search space used: 6949816398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)