Query 042478
Match_columns 954
No_of_seqs 619 out of 3967
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:34:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0080 RplK Ribosomal protein 100.0 2.7E-52 5.9E-57 390.2 15.9 140 806-945 2-141 (141)
2 TIGR01632 L11_bact 50S ribosom 100.0 6.1E-50 1.3E-54 384.3 16.4 139 806-944 1-140 (140)
3 CHL00127 rpl11 ribosomal prote 100.0 1.5E-49 3.2E-54 381.7 16.1 140 804-943 1-140 (140)
4 PLN03072 60S ribosomal protein 100.0 1.9E-49 4.2E-54 389.1 16.4 153 785-954 1-156 (166)
5 PRK01143 rpl11p 50S ribosomal 100.0 2.5E-49 5.4E-54 389.1 16.8 145 810-954 3-148 (163)
6 PRK00140 rplK 50S ribosomal pr 100.0 2.7E-49 5.9E-54 381.4 16.2 141 804-944 1-141 (141)
7 cd04852 Peptidases_S8_3 Peptid 100.0 3.9E-47 8.5E-52 423.4 26.8 273 110-554 1-307 (307)
8 smart00649 RL11 Ribosomal prot 100.0 2.1E-47 4.5E-52 365.3 15.1 132 812-943 1-132 (132)
9 cd00349 Ribosomal_L11 Ribosoma 100.0 1.5E-46 3.3E-51 358.9 14.9 131 812-942 1-131 (131)
10 PRK14539 50S ribosomal protein 100.0 3.1E-46 6.7E-51 371.0 16.5 139 804-946 2-140 (196)
11 PTZ00321 ribosomal protein L11 100.0 1.1E-45 2.3E-50 383.1 17.8 140 806-945 47-194 (342)
12 KOG3257 Mitochondrial/chloropl 100.0 5E-46 1.1E-50 349.5 13.4 146 809-954 19-167 (168)
13 PTZ00262 subtilisin-like prote 100.0 1.3E-44 2.9E-49 419.8 23.7 288 129-597 303-620 (639)
14 cd05562 Peptidases_S53_like Pe 100.0 8.1E-44 1.8E-48 388.8 25.0 271 136-590 1-274 (275)
15 cd07479 Peptidases_S8_SKI-1_li 100.0 1.1E-43 2.3E-48 384.8 24.1 239 133-556 1-253 (255)
16 cd07478 Peptidases_S8_CspA-lik 100.0 1.7E-43 3.6E-48 411.0 23.0 392 137-581 1-455 (455)
17 cd07475 Peptidases_S8_C5a_Pept 100.0 8.8E-43 1.9E-47 395.1 27.2 298 132-590 2-346 (346)
18 cd07497 Peptidases_S8_14 Pepti 100.0 6.2E-43 1.3E-47 387.5 23.7 268 139-553 1-311 (311)
19 cd07476 Peptidases_S8_thiazoli 100.0 6.6E-42 1.4E-46 372.6 24.2 243 132-558 2-254 (267)
20 cd07489 Peptidases_S8_5 Peptid 100.0 8.6E-42 1.9E-46 381.4 25.1 290 129-593 2-301 (312)
21 PTZ00105 60S ribosomal protein 100.0 2.7E-42 6E-47 331.5 14.0 128 825-954 1-130 (140)
22 cd07474 Peptidases_S8_subtilis 100.0 1.3E-40 2.8E-45 368.9 26.9 285 139-588 1-295 (295)
23 cd05561 Peptidases_S8_4 Peptid 100.0 9.6E-41 2.1E-45 358.4 23.4 231 142-581 1-239 (239)
24 cd07483 Peptidases_S8_Subtilis 100.0 4.4E-40 9.6E-45 363.4 24.4 253 140-554 1-291 (291)
25 cd07493 Peptidases_S8_9 Peptid 100.0 9.9E-40 2.2E-44 355.6 23.8 238 141-554 1-261 (261)
26 cd07481 Peptidases_S8_Bacillop 100.0 3.8E-39 8.1E-44 351.6 25.1 242 139-554 1-264 (264)
27 cd04857 Peptidases_S8_Tripepti 100.0 9.3E-39 2E-43 360.8 25.8 209 206-555 186-411 (412)
28 cd07487 Peptidases_S8_1 Peptid 100.0 1.1E-38 2.3E-43 347.6 25.3 247 139-554 1-264 (264)
29 cd07494 Peptidases_S8_10 Pepti 100.0 2.5E-38 5.3E-43 349.8 25.5 253 129-557 10-286 (298)
30 cd07485 Peptidases_S8_Fervidol 100.0 2.5E-38 5.4E-43 346.9 24.3 251 131-552 1-273 (273)
31 cd04077 Peptidases_S8_PCSK9_Pr 100.0 7.5E-38 1.6E-42 339.7 23.1 229 132-554 17-254 (255)
32 KOG1153 Subtilisin-related pro 100.0 3.7E-38 8.1E-43 341.8 19.8 332 29-555 77-462 (501)
33 cd07484 Peptidases_S8_Thermita 100.0 1.5E-37 3.2E-42 338.3 23.5 235 129-556 18-259 (260)
34 cd04847 Peptidases_S8_Subtilis 100.0 9.6E-38 2.1E-42 345.4 20.8 250 143-554 2-291 (291)
35 cd04842 Peptidases_S8_Kp43_pro 100.0 2.5E-37 5.4E-42 342.3 23.7 265 135-554 2-293 (293)
36 cd07490 Peptidases_S8_6 Peptid 100.0 4.9E-37 1.1E-41 333.0 24.0 248 141-554 1-254 (254)
37 cd07496 Peptidases_S8_13 Pepti 100.0 9.7E-37 2.1E-41 336.4 24.5 253 141-552 1-285 (285)
38 cd07473 Peptidases_S8_Subtilis 100.0 3.7E-36 7.9E-41 327.1 25.1 244 140-554 2-259 (259)
39 KOG0886 40S ribosomal protein 100.0 1.5E-37 3.2E-42 285.7 11.3 150 793-954 6-157 (167)
40 cd07498 Peptidases_S8_15 Pepti 100.0 2.2E-36 4.9E-41 325.5 21.8 231 142-552 1-242 (242)
41 cd04843 Peptidases_S8_11 Pepti 100.0 2.4E-36 5.1E-41 330.4 22.2 239 129-554 4-277 (277)
42 cd07477 Peptidases_S8_Subtilis 100.0 9E-36 1.9E-40 317.9 22.9 221 141-552 1-229 (229)
43 cd07480 Peptidases_S8_12 Pepti 100.0 8.6E-36 1.9E-40 330.7 22.6 262 134-586 2-296 (297)
44 cd07491 Peptidases_S8_7 Peptid 100.0 4.7E-36 1E-40 322.9 19.0 218 139-536 2-229 (247)
45 PF00082 Peptidase_S8: Subtila 100.0 2.5E-36 5.4E-41 332.0 13.7 263 143-590 1-282 (282)
46 cd07492 Peptidases_S8_8 Peptid 100.0 7.5E-35 1.6E-39 309.6 22.6 220 141-554 1-222 (222)
47 cd07482 Peptidases_S8_Lantibio 100.0 1.8E-34 3.9E-39 319.5 22.0 151 141-305 1-159 (294)
48 cd04059 Peptidases_S8_Protein_ 100.0 2.2E-34 4.7E-39 319.5 21.4 248 128-554 27-297 (297)
49 cd04848 Peptidases_S8_Autotran 100.0 4.3E-34 9.3E-39 311.2 21.6 240 138-554 1-267 (267)
50 KOG4266 Subtilisin kexin isozy 100.0 6.4E-33 1.4E-37 307.2 16.9 353 32-590 49-465 (1033)
51 KOG1114 Tripeptidyl peptidase 100.0 3.2E-30 6.9E-35 297.6 27.8 230 207-590 312-557 (1304)
52 cd00306 Peptidases_S8_S53 Pept 100.0 1.9E-27 4.1E-32 253.3 23.5 229 142-552 1-241 (241)
53 cd07488 Peptidases_S8_2 Peptid 100.0 5.1E-28 1.1E-32 259.9 16.4 192 206-552 38-246 (247)
54 PF00298 Ribosomal_L11: Riboso 99.9 5E-24 1.1E-28 180.6 8.5 69 874-942 1-69 (69)
55 PF03946 Ribosomal_L11_N: Ribo 99.9 6.2E-23 1.3E-27 168.7 7.3 59 811-869 1-60 (60)
56 COG1404 AprE Subtilisin-like s 99.9 9.5E-21 2.1E-25 223.5 23.6 241 129-554 129-397 (508)
57 KOG3526 Subtilisin-like propro 99.7 6.9E-17 1.5E-21 171.9 11.2 92 511-610 376-474 (629)
58 cd04056 Peptidases_S53 Peptida 99.7 1.9E-16 4E-21 180.4 15.4 104 219-326 82-199 (361)
59 cd02120 PA_subtilisin_like PA_ 99.3 2.4E-11 5.2E-16 117.5 12.7 120 331-455 2-125 (126)
60 cd02133 PA_C5a_like PA_C5a_lik 99.2 6.5E-11 1.4E-15 117.1 11.1 112 352-480 26-141 (143)
61 PF05922 Inhibitor_I9: Peptida 98.9 3.2E-09 7E-14 94.4 8.1 78 34-113 1-82 (82)
62 cd04816 PA_SaNapH_like PA_SaNa 98.7 6.4E-08 1.4E-12 93.1 9.5 84 369-454 29-120 (122)
63 PF02225 PA: PA domain; Inter 98.7 3.4E-08 7.3E-13 91.4 6.0 77 368-446 18-101 (101)
64 cd02122 PA_GRAIL_like PA _GRAI 98.6 1.6E-07 3.5E-12 92.0 10.2 86 368-455 43-137 (138)
65 cd02129 PA_hSPPL_like PA_hSPPL 98.6 1.5E-07 3.2E-12 89.5 9.2 87 353-448 21-114 (120)
66 cd02130 PA_ScAPY_like PA_ScAPY 98.6 6.4E-07 1.4E-11 86.2 12.1 83 369-454 31-120 (122)
67 cd04818 PA_subtilisin_1 PA_sub 98.5 3.2E-07 6.9E-12 87.8 9.4 83 368-453 26-115 (118)
68 cd02127 PA_hPAP21_like PA_hPAP 98.5 3.5E-07 7.6E-12 87.2 9.4 85 369-456 21-116 (118)
69 cd00538 PA PA: Protease-associ 98.5 3.8E-07 8.3E-12 87.8 8.9 84 368-453 29-123 (126)
70 cd02126 PA_EDEM3_like PA_EDEM3 98.5 5.3E-07 1.2E-11 87.2 9.1 82 369-453 27-123 (126)
71 cd02124 PA_PoS1_like PA_PoS1_l 98.4 1.1E-06 2.4E-11 85.1 9.7 96 354-454 28-127 (129)
72 cd02132 PA_GO-like PA_GO-like: 98.4 1E-06 2.2E-11 86.7 8.9 80 369-453 48-136 (139)
73 cd04813 PA_1 PA_1: Protease-as 98.4 1.3E-06 2.8E-11 83.2 9.0 77 368-448 26-111 (117)
74 cd02125 PA_VSR PA_VSR: Proteas 98.4 1.4E-06 3.1E-11 84.2 9.1 84 369-454 22-125 (127)
75 cd04817 PA_VapT_like PA_VapT_l 98.3 1.7E-06 3.6E-11 84.6 8.8 72 376-449 49-134 (139)
76 cd02123 PA_C_RZF_like PA_C-RZF 98.3 2.7E-06 5.9E-11 85.1 9.2 81 369-451 50-142 (153)
77 COG4934 Predicted protease [Po 98.0 5E-05 1.1E-09 94.6 14.6 98 220-320 288-395 (1174)
78 cd04819 PA_2 PA_2: Protease-as 98.0 5.1E-05 1.1E-09 73.6 11.5 73 376-450 37-121 (127)
79 PF06280 DUF1034: Fn3-like dom 97.8 9E-05 2E-09 70.2 9.6 90 642-735 2-112 (112)
80 KOG3525 Subtilisin-like propro 97.6 0.00032 7E-09 81.5 11.3 75 514-590 250-324 (431)
81 cd04815 PA_M28_2 PA_M28_2: Pro 97.1 0.0014 3E-08 64.2 7.4 73 378-452 34-130 (134)
82 cd02128 PA_TfR PA_TfR: Proteas 96.9 0.0016 3.6E-08 66.5 6.4 68 379-448 51-155 (183)
83 cd04822 PA_M28_1_3 PA_M28_1_3: 96.3 0.014 3.1E-07 58.0 8.1 77 369-445 33-131 (151)
84 cd04814 PA_M28_1 PA_M28_1: Pro 96.2 0.013 2.8E-07 57.7 7.2 63 353-421 21-101 (142)
85 KOG2442 Uncharacterized conser 95.9 0.013 2.8E-07 66.8 6.0 72 379-452 91-171 (541)
86 cd04820 PA_M28_1_1 PA_M28_1_1: 95.8 0.016 3.4E-07 56.7 5.7 51 369-421 35-97 (137)
87 KOG4628 Predicted E3 ubiquitin 94.5 0.084 1.8E-06 59.0 7.1 76 370-447 63-148 (348)
88 cd02121 PA_GCPII_like PA_GCPII 94.4 0.046 9.9E-07 57.9 4.6 42 379-422 67-108 (220)
89 cd02131 PA_hNAALADL2_like PA_h 94.4 0.047 1E-06 53.8 4.3 41 380-422 37-77 (153)
90 PF10633 NPCBM_assoc: NPCBM-as 93.4 0.34 7.3E-06 42.6 7.4 58 650-707 5-63 (78)
91 PF14874 PapD-like: Flagellar- 92.0 1.8 3.8E-05 39.9 10.7 79 650-735 20-98 (102)
92 KOG3920 Uncharacterized conser 88.8 0.53 1.2E-05 46.1 4.2 77 368-447 73-162 (193)
93 PF11614 FixG_C: IG-like fold 85.0 7 0.00015 37.1 9.7 54 653-707 34-87 (118)
94 cd04821 PA_M28_1_2 PA_M28_1_2: 82.0 1.8 4E-05 43.5 4.5 45 376-420 42-103 (157)
95 PF06030 DUF916: Bacterial pro 79.1 15 0.00032 35.4 9.4 71 649-724 26-119 (121)
96 COG1470 Predicted membrane pro 65.5 31 0.00067 40.3 9.3 64 650-716 397-461 (513)
97 PF00345 PapD_N: Pili and flag 63.1 61 0.0013 30.8 9.7 51 653-705 17-74 (122)
98 COG0051 RpsJ Ribosomal protein 61.2 2.9 6.2E-05 38.8 0.2 40 914-953 8-47 (104)
99 PF07172 GRP: Glycine rich pro 58.1 10 0.00022 34.8 3.2 24 1-24 1-24 (95)
100 COG1470 Predicted membrane pro 53.2 58 0.0013 38.1 8.7 64 650-716 284-352 (513)
101 PF00635 Motile_Sperm: MSP (Ma 52.2 70 0.0015 29.4 8.0 54 650-706 18-71 (109)
102 TIGR02745 ccoG_rdxA_fixG cytoc 51.4 51 0.0011 38.9 8.3 54 652-706 348-401 (434)
103 PF07718 Coatamer_beta_C: Coat 47.0 64 0.0014 31.8 6.8 51 669-725 89-139 (140)
104 PF07610 DUF1573: Protein of u 42.9 67 0.0014 25.0 5.2 44 656-702 2-45 (45)
105 KOG2018 Predicted dinucleotide 38.1 43 0.00094 37.1 4.5 76 220-298 137-244 (430)
106 PF05753 TRAP_beta: Translocon 34.1 2.8E+02 0.0062 28.6 9.7 57 649-706 37-99 (181)
107 smart00635 BID_2 Bacterial Ig- 33.4 1.2E+02 0.0027 26.5 6.1 41 679-728 4-44 (81)
108 TIGR01046 S10_Arc_S20_Euk ribo 32.0 17 0.00037 33.7 0.3 40 914-953 5-44 (99)
109 PF07705 CARDB: CARDB; InterP 31.7 2.5E+02 0.0054 24.9 8.1 53 649-705 18-72 (101)
110 PRK12271 rps10p 30S ribosomal 28.6 21 0.00045 33.3 0.3 40 914-953 6-45 (102)
111 PF02845 CUE: CUE domain; Int 27.3 58 0.0013 24.8 2.5 24 530-553 5-28 (42)
112 PTZ00039 40S ribosomal protein 24.4 27 0.00059 33.3 0.2 41 913-953 20-60 (115)
113 PF03487 IL13: Interleukin-13; 24.0 32 0.00068 26.1 0.4 41 805-851 2-42 (43)
114 PF08260 Kinin: Insect kinin p 23.3 38 0.00083 16.8 0.5 6 473-478 3-8 (8)
No 1
>COG0080 RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-52 Score=390.17 Aligned_cols=140 Identities=60% Similarity=0.987 Sum_probs=137.6
Q ss_pred cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHH
Q 042478 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKA 885 (954)
Q Consensus 806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~ 885 (954)
||++++|+|+++||+|+|+|||||+|||+|||+|+|||+||++|++++|++|||+||||+||+|+|++++||+|+||+|+
T Consensus 2 ~k~~~~ikl~v~aGkA~p~PpvGPALG~~Gvni~~f~k~fN~~T~~~~G~~vPV~Itv~~drsftf~~ktPPas~LlkKa 81 (141)
T COG0080 2 KKVVKIIKLQVPAGKANPSPPVGPALGQLGVNIMEFCKEFNAATKDEKGLPVPVVITVYEDRSFTFIVKTPPASALLKKA 81 (141)
T ss_pred CccceEEEEEecccccCCCCCCCccccccCCCHHHHHHHHHHHhhccCCCeeeEEEEEEcCCcEEEEECCCCHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCC
Q 042478 886 AGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPP 945 (954)
Q Consensus 886 ~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~ 945 (954)
+|+++||++|+++++|+||++||+|||++|++||++.+|++++|+|+||||||||+||++
T Consensus 82 ~g~~~Gs~~p~k~~vG~lt~~qv~eIA~~K~~dl~a~~l~aA~k~I~GTa~SMGv~Veg~ 141 (141)
T COG0080 82 AGIEKGSGKPNKNKVGKLTLAQVREIAKTKMPDLNAKDLEAAVKEILGTARSMGVTVEGK 141 (141)
T ss_pred hCCCCCCCCCCcceeeeeeHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhceEEeecC
Confidence 999999999999999999999999999999999999999999999999999999999974
No 2
>TIGR01632 L11_bact 50S ribosomal protein L11. This model represents bacterial, chloroplast, and most mitochondrial forms of 50S ribosomal protein L11.
Probab=100.00 E-value=6.1e-50 Score=384.33 Aligned_cols=139 Identities=67% Similarity=1.049 Sum_probs=136.3
Q ss_pred cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcC-CCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHH
Q 042478 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLK 884 (954)
Q Consensus 806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~-~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k 884 (954)
|+++++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++ |+|++|||+|+||+||+|+|++++||+||||+|
T Consensus 1 k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gini~~f~k~fN~~T~~~~~G~~vpV~Itv~~drsf~~~v~~Pp~s~ll~k 80 (140)
T TIGR01632 1 KKIVGIIKLQVPAGQANPAPPVGPALGQRGVNIMEFCKQFNARTADYEPGLPVPVVITVYEDKSFTFIVKTPPVSYLLKK 80 (140)
T ss_pred CceEEEEEEEEeccccCCCCCCcccccccCCCHHHHHHHHHHHHhhhcCCCeEEEEEEEeCCCeEEEEEcCCCHHHHHHH
Confidence 3578999999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcC
Q 042478 885 AAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDP 944 (954)
Q Consensus 885 ~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~ 944 (954)
++|+++|+++|+++++|+||++||+|||++|++|+++.+|+++||+|+||||||||+|++
T Consensus 81 aag~~~gs~~p~~~~~G~it~~qv~eIA~~K~~d~~~~~l~~~vk~v~GTarSmGi~V~~ 140 (140)
T TIGR01632 81 AAGVEKGSKNPKKEKVGKITRKQVREIAEIKMSDLNTKDIEAAMKIIAGTAKSMGIEIVG 140 (140)
T ss_pred HhCCCCCCCCCCCeEEeEecHHHHHHHHHHHHHHhCcccHHHHHHHhheeHeeceEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999985
No 3
>CHL00127 rpl11 ribosomal protein L11; Validated
Probab=100.00 E-value=1.5e-49 Score=381.67 Aligned_cols=140 Identities=69% Similarity=1.064 Sum_probs=137.5
Q ss_pred cccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHH
Q 042478 804 KAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLL 883 (954)
Q Consensus 804 ~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~ 883 (954)
|+|++.++|+|+++||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+|+||+||+|+|++++||+||||+
T Consensus 1 m~k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gini~~f~k~fN~~T~~~~g~~vpV~Itv~~drsf~~~v~~Pp~s~ll~ 80 (140)
T CHL00127 1 MAKKKLAIIKLALPAGKATPAPPVGPALGQHGVNINLFCKEYNARTKDKIGLIIPVEISVYEDKSYTFILKTPPASVLLA 80 (140)
T ss_pred CccccccEEEEEEecCccCCCCCCcccccccCCCHHHHHHHHHHHhhhcCCCeEEEEEEEeCCceEEEEEcCCCHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEc
Q 042478 884 KAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 943 (954)
Q Consensus 884 k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~ 943 (954)
|++|+++|+++|+++++|+||++||+|||++|++|+++.+|+++||+|+||||||||+|.
T Consensus 81 ka~gi~~gs~~p~~~~~G~it~~~v~eIA~~K~~d~~~~~l~~~vk~v~GTa~SmGi~V~ 140 (140)
T CHL00127 81 KAAGIKKGSGEPNKKKVGSITIKQLEEIAQIKLPDLNTISLSKAIKIIEGTAKNMGISIK 140 (140)
T ss_pred HHhCCCcCCCCCCCeecceecHHHHHHHHHHHhhhhccccHHHHHHHhHeeheeceEEeC
Confidence 999999999999999999999999999999999999999999999999999999999983
No 4
>PLN03072 60S ribosomal protein L12; Provisional
Probab=100.00 E-value=1.9e-49 Score=389.07 Aligned_cols=153 Identities=20% Similarity=0.351 Sum_probs=146.1
Q ss_pred CCccceeeecCCCCCCccccccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcC-CCCceeeEEEEE
Q 042478 785 TPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITV 863 (954)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~-~~g~~i~v~i~v 863 (954)
||+ +|+|++ .++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++ |+|++|||+|||
T Consensus 1 m~~-----~~~~~~----------~~~i~l~v~aG~A~P~PplGPaLG~~GvNi~~f~k~fN~~T~~~~~G~~VpV~Itv 65 (166)
T PLN03072 1 MPP-----KLDPSQ----------VVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV 65 (166)
T ss_pred CCC-----CCCCCc----------cEEEEEEEEcCccCCCCCCccccccCCCCHHHHHHHHHHHhhhhcCCCeEEEEEEE
Confidence 566 888877 5689999999999999999999999999999999999999996 999999999999
Q ss_pred eCCCeEEEEEeCCCHHHHHHHHhCCCCCCCC--CCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceE
Q 042478 864 YDDRSFTFILKTPPASVLLLKAAGVEKGSKD--PKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGID 941 (954)
Q Consensus 864 ~~dr~~~~~~~~p~~s~li~k~~~~~~~~~~--~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~ 941 (954)
|+ |+|+|++ +||+|+||+|++|+++|+++ |+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+
T Consensus 66 ~~-rsf~~~v-~Pp~s~LLkKa~g~~kgs~~~~~~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~avk~VlGTarSmGi~ 143 (166)
T PLN03072 66 QN-RQAKVSV-VPSAAALVIKALKEPERDRKKVKNIKHNGNISLDDVIEIAKIMRPRSMAKELAGTVKEILGTCVSVGCT 143 (166)
T ss_pred EC-CeEEEEe-CCCHHHHHHHHhCCCCCCCccCCCCeeeeeecHHHHHHHHHHHHHHhCcccHHHHHHHhHheeeeCeEE
Confidence 95 9999999 99999999999999999998 67799999999999999999999999999999999999999999999
Q ss_pred EcCCCchhhhccC
Q 042478 942 IDPPVLETKKKEL 954 (954)
Q Consensus 942 v~~~~~~~~~~~~ 954 (954)
|+++.|+|++++|
T Consensus 144 V~gk~pkev~~~i 156 (166)
T PLN03072 144 VDGKDPKDLQQEI 156 (166)
T ss_pred EeCCCHHHHHHHH
Confidence 9999999998864
No 5
>PRK01143 rpl11p 50S ribosomal protein L11P; Validated
Probab=100.00 E-value=2.5e-49 Score=389.09 Aligned_cols=145 Identities=34% Similarity=0.628 Sum_probs=142.6
Q ss_pred EEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEE-eCCCeEEEEEeCCCHHHHHHHHhCC
Q 042478 810 GLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITV-YDDRSFTFILKTPPASVLLLKAAGV 888 (954)
Q Consensus 810 ~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v-~~dr~~~~~~~~p~~s~li~k~~~~ 888 (954)
++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||| |+||+|+|++++||+||||+|++|+
T Consensus 3 ~~ikl~v~aG~A~p~PplGPaLG~~Gini~~f~k~fN~~T~~~~g~~vpV~Itv~~~drsf~~~vk~Pp~s~ll~kaag~ 82 (163)
T PRK01143 3 KVVEVLVEGGKATPGPPLGPALGPLGLNVKQVVQEINEKTKDFKGMQVPVKVIVDTDTKKFEIEVGIPPTTALIKKELGI 82 (163)
T ss_pred eEEEEEEecCccCCCCCCcccccccCCCHHHHHHHHHHHhhhcCCCeEeEEEEEEeCCceEEEEECCCCHHHHHHHHhCC
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478 889 EKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL 954 (954)
Q Consensus 889 ~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~ 954 (954)
++|+++|+++++|+||++||+|||+.|++|+++++|+++||+|+||||||||+|+++.|+++.++|
T Consensus 83 ~kgs~~p~~~~vG~It~~qv~eIA~~K~~d~~~~~l~~~vk~VlGTarSmGi~V~g~~pkev~~~i 148 (163)
T PRK01143 83 EKGSGEPGHEVVGNLSFEQVVKIAIMKKDDLLSYDLKAAVKEVLGTCVSMGVTVEGKDPKEVQKEV 148 (163)
T ss_pred cCCCCCCCCceeeeecHHHHHHHHHHHhhhhccccHHHHHHHHHhhHhhceEEEecCCHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999998865
No 6
>PRK00140 rplK 50S ribosomal protein L11; Validated
Probab=100.00 E-value=2.7e-49 Score=381.43 Aligned_cols=141 Identities=68% Similarity=1.050 Sum_probs=138.6
Q ss_pred cccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHH
Q 042478 804 KAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLL 883 (954)
Q Consensus 804 ~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~ 883 (954)
|+|++.++|+|+++||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+|+||+||+|+|++++||+||||+
T Consensus 1 m~k~~~~~ikl~v~aG~A~p~PplgP~LG~~Gini~~f~k~fN~~T~~~~g~~vpV~i~v~~drsf~~~v~~Pp~s~ll~ 80 (141)
T PRK00140 1 MAKKVVGYIKLQIPAGKANPAPPVGPALGQRGVNIMEFCKAFNARTQDQKGLPIPVVITVYEDRSFTFITKTPPASVLLK 80 (141)
T ss_pred CCcccceEEEEEEecCccCCCCCCcccccccCCCHHHHHHHHHHHHhhcCCCeEEEEEEEecCCeEEEEEcCCCHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcC
Q 042478 884 KAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDP 944 (954)
Q Consensus 884 k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~ 944 (954)
|++|+++|+++|+++++|+||++||||||++|++|+++++|+++||+|+|||+||||+|++
T Consensus 81 k~~g~~~gs~~p~~~~vG~it~~~v~eIA~~K~~d~~~~~l~~~vk~VlGTa~SmGi~V~g 141 (141)
T PRK00140 81 KAAGIEKGSGEPNKEKVGKITRAQVREIAETKMPDLNAADIEAAMRMIAGTARSMGIVVEG 141 (141)
T ss_pred HHhCCCCCCCCCCCeEEeeEcHHHHHHHHHHHHHhhCCCcHHHHHHHhheeeeEeeEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999985
No 7
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.9e-47 Score=423.39 Aligned_cols=273 Identities=55% Similarity=0.880 Sum_probs=236.3
Q ss_pred eeccccccccccccccccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCc
Q 042478 110 LKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNR 189 (954)
Q Consensus 110 ~~l~t~~s~~~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~ 189 (954)
++|+++++|+|+|+.... ...+|..+.+|+||+|||||||||++||+|.+.... +++..|.+.|..+..+....||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW-GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGG--PYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCC-CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCC--CCCCCCCCcccCCCCcCccCcCC
Confidence 478999999999998531 112577899999999999999999999999988777 88899999999998888889999
Q ss_pred cccceeccccCCCC---------------CCCchhhhcccccccc--------------ceeccCCCcEEEEEEecCC-C
Q 042478 190 KLIGARWFIKGIMD---------------MINASTNTDEGLAAGL--------------ARGGAPLAHLAIYKACWDI-G 239 (954)
Q Consensus 190 kiiga~~~~~~~~~---------------~~G~GTa~v~G~a~G~--------------~~GvAP~A~L~~yKv~~~~-g 239 (954)
|++|+++|.+++.. .+|||| |++|+++|. +.||||+|+|+.+|+++.. .
T Consensus 78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT-~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~ 156 (307)
T cd04852 78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGT-HTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG 156 (307)
T ss_pred eEEEEEEcccchhhccCcccccCCCCCccCCCCch-hhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC
Confidence 99999999876432 127999 999987663 5799999999999999874 5
Q ss_pred CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEc
Q 042478 240 CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVG 319 (954)
Q Consensus 240 ~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVg 319 (954)
+..+++++||++|+++|++|||||||.... . .+. +.+..++..+.++|++||+||||+|+...+.++..||+++||
T Consensus 157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~-~~~--~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 157 CFGSDILAAIDQAIADGVDVISYSIGGGSP-D-PYE--DPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-C-ccc--CHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 889999999999999999999999998752 2 344 788888999999999999999999988888889999999999
Q ss_pred ccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHH
Q 042478 320 ATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQ 399 (954)
Q Consensus 320 As~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~ 399 (954)
|++
T Consensus 233 a~~----------------------------------------------------------------------------- 235 (307)
T cd04852 233 AST----------------------------------------------------------------------------- 235 (307)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 621
Q ss_pred HHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCC
Q 042478 400 SAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGP 479 (954)
Q Consensus 400 ~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP 479 (954)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcCCeEEecCCceEecCCCC----CCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 480 NSMSPAVLKPDIVAPGVDILSAYPPI----GSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 480 ~~~~~~~lKPDI~APG~~I~sa~~~~----~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
+||||+|||++|+++++.. .......|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 236 -------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 4679999999999998741 1222478999999999999999999999999999999999999999985
No 8
>smart00649 RL11 Ribosomal protein L11/L12.
Probab=100.00 E-value=2.1e-47 Score=365.28 Aligned_cols=132 Identities=63% Similarity=1.023 Sum_probs=130.5
Q ss_pred EEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhCCCCC
Q 042478 812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKG 891 (954)
Q Consensus 812 i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~~~~~ 891 (954)
|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+|+||+||+|+|++++||+||||+|++|+++|
T Consensus 1 ikl~v~aG~A~p~PplgP~LG~~Gini~~f~k~fN~~T~~~~g~~vpV~I~v~~dksf~~~v~~P~~s~ll~k~~g~~kg 80 (132)
T smart00649 1 IKLQIPAGKANPAPPLGPALGQLGINIMEFCKEFNARTKDKKGLPIPVKITVYNDKSFTFIIKTPPASFLLKKAAGIEKG 80 (132)
T ss_pred CEEEEecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhcCCCeEeEEEEEeCCCeEEEEEcCCCHHHHHHHHhCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEc
Q 042478 892 SKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 943 (954)
Q Consensus 892 ~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~ 943 (954)
+++|+++++|+||++||||||++|++|+++++|+++||+|+||||||||+|+
T Consensus 81 s~~p~~~~~g~it~~~v~eIA~~K~~d~~~~~l~~~~k~V~GTa~SmGi~V~ 132 (132)
T smart00649 81 SKKPGKKKVGNITLDQVYEIAKIKRPDLNAKDLEAAVKEILGTARSMGITVE 132 (132)
T ss_pred CCCCCCeeeeEEcHHHHHHHHHHHHHHhcchhHHHHHHHHHhhHhcceEEeC
Confidence 9999999999999999999999999999999999999999999999999996
No 9
>cd00349 Ribosomal_L11 Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been im
Probab=100.00 E-value=1.5e-46 Score=358.90 Aligned_cols=131 Identities=63% Similarity=1.014 Sum_probs=129.5
Q ss_pred EEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhCCCCC
Q 042478 812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKG 891 (954)
Q Consensus 812 i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~~~~~ 891 (954)
|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+|+||+||+|+|++++||+||||+|++|+++|
T Consensus 1 ikl~v~aG~A~p~PplgP~LG~~Gin~~~f~k~fN~~T~~~~g~~vpV~itv~~dksf~~~v~~Pp~s~ll~ka~g~~kg 80 (131)
T cd00349 1 IKLQVPAGKASPAPPLGPALGQLGVNIMKFCKEFNARTKDYKGLPVPVKITVYNDRSFTFEVKTPPASALLKKAAGIEKG 80 (131)
T ss_pred CEEEEecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCCCeEEEEEcCCCHHHHHHHHhCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEE
Q 042478 892 SKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 942 (954)
Q Consensus 892 ~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v 942 (954)
+++|+++++|+||++||||||++|++|+++++|+++||+|+||||||||+|
T Consensus 81 s~~~~~~~~g~it~~~v~eIA~~K~~dl~~~~l~~~vk~v~GTa~SmGi~V 131 (131)
T cd00349 81 SKKPNKEKVGNITLDQVYEIAKIKLPDLNAKTLKSAVKEILGTARSMGITV 131 (131)
T ss_pred CCCCCCeeeeeecHHHHHHHHHHHHhhhcchhHHHHHHHHHhhHhhCeEEC
Confidence 999999999999999999999999999999999999999999999999986
No 10
>PRK14539 50S ribosomal protein L11/unknown domain fusion protein; Provisional
Probab=100.00 E-value=3.1e-46 Score=370.98 Aligned_cols=139 Identities=46% Similarity=0.706 Sum_probs=134.4
Q ss_pred cccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHH
Q 042478 804 KAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLL 883 (954)
Q Consensus 804 ~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~ 883 (954)
|+|+++++|+|+|+||+|+| ||+|||+|||+|+|||+||++|++|+|++|||+||||+||+|+|++++||+||||+
T Consensus 2 m~kki~~~Ikl~v~AGkA~P----GPaLG~~GVNi~~FcKefN~~Tk~~~G~~VPV~ItV~~DRsf~f~vktPptS~LLk 77 (196)
T PRK14539 2 AKKEVVKVAKLQFNAGQAKP----GPSLAGVGINMPEFTKQFNDATRDRGGEPVPVQITVYKDKSFDFKLFTAPASFKIK 77 (196)
T ss_pred ccchhheEEEEEEECCccCC----CCcccccCCCHHHHHHHHHHHhhhcCCceEEEEEEEecCCeEEEEEeCCCHHHHHH
Confidence 67788999999999999999 55688999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCC
Q 042478 884 KAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPV 946 (954)
Q Consensus 884 k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~ 946 (954)
|++|+++|+++|+++++|+||++||||||++|++|+++.+|+++||+|+||||||||+|++..
T Consensus 78 Kaagi~kGs~~p~k~~vG~Itl~qv~eIAk~K~~Dl~~~~Le~avK~VlGTArSMGI~Veg~d 140 (196)
T PRK14539 78 QAAKIKSGSANSKTTIVGTITLSQLEEIAKYKLPDLNTDDVEEAMHTIAGTAKNMGVLVEGYD 140 (196)
T ss_pred HHhCCCCCCCCCCCeEEEEecHHHHHHHHHHHhhhhCCCcHHHHHHHHHhhheeCeEEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999999854
No 11
>PTZ00321 ribosomal protein L11; Provisional
Probab=100.00 E-value=1.1e-45 Score=383.11 Aligned_cols=140 Identities=30% Similarity=0.462 Sum_probs=133.7
Q ss_pred cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcC-C-CCceeeEEEEEeCCCeEEEEEeCCCHHHHHH
Q 042478 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-K-AGYVIPVEITVYDDRSFTFILKTPPASVLLL 883 (954)
Q Consensus 806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~-~-~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~ 883 (954)
|+|++.|||+|+||+|+|+|||||+|||+|||||+|||+||++|++ + +|++|||+|+||+||+|+|+|++||+|||||
T Consensus 47 KkV~~~IKL~VpAGKAtPaPPVGPALGq~GVNImqFCKeFNerTK~~fk~GvpVPV~ITVy~DKSF~F~IktPPtS~LLK 126 (342)
T PTZ00321 47 KRVLHNWRFFIKAGKAATGPPVGQEFSKLGLKAMDFAKSFNDRTKPHFKDDVELIVRIQVYFDKSYLFTIEPPPTAWFIL 126 (342)
T ss_pred CeeeEEEEEEEECCCcCCCCCCcccccccCCCHHHHHHHHHHHHHhhccCCCeEeEEEEEeCCCeEEEEECCCCHHHHHH
Confidence 4579999999999999999999999999999999999999999998 4 6999999999999999999999999999999
Q ss_pred HHhCCCCCCCCC--CC-ceeEeecHHHHHHHHHHhCCCCCC---cCHHHHHHHHHHhhcccceEEcCC
Q 042478 884 KAAGVEKGSKDP--KQ-QKVGKITIEQLRAIATEKLPDLNC---TSIESAMRIIAGTAANMGIDIDPP 945 (954)
Q Consensus 884 k~~~~~~~~~~~--~~-~~~g~it~~~i~~Ia~~k~~~~~~---~~l~~~~k~i~gta~smG~~v~~~ 945 (954)
|++|+++|+++| ++ +++|+||++||||||++|++|+++ .+|+++||+|+|||+||||+|+++
T Consensus 127 KAAGI~KGS~~P~~~k~e~VG~ITlkQVyEIAkiK~~DLnal~~~~LesAvK~ViGTARSMGIkVeGK 194 (342)
T PTZ00321 127 RALRKKRRETGPVPLRGHYCALMTLEMAYEIAKMKPRSWGRPEYPLIETRVRRVVGQARRMGVCFIGV 194 (342)
T ss_pred HHhCCCCCCCCCCCCCCceEEeccHHHHHHHHHHhhhccccccccCHHHHHHHHHhhHhcCeEEEecc
Confidence 999999999999 33 899999999999999999999875 799999999999999999999984
No 12
>KOG3257 consensus Mitochondrial/chloroplast ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-46 Score=349.53 Aligned_cols=146 Identities=60% Similarity=0.947 Sum_probs=141.6
Q ss_pred eEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCC-CCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhC
Q 042478 809 LGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADK-AGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAG 887 (954)
Q Consensus 809 ~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~-~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~ 887 (954)
...+||.++||.|.|+||+||+|||+|||+++||||||++|++| .|+|+|++||+.+||+|+|++++||+||||+||+|
T Consensus 19 ~~~ikl~v~Ag~A~~~pp~gP~Lgqr~l~viafckefnarT~~~k~~vplp~kiTv~pDrsftf~iktPpts~lL~kAag 98 (168)
T KOG3257|consen 19 SASIKLIVKAGLAAPAPPLGPALGQRGLNVIAFCKEFNARTKKVKPGVPLPGKITVKPDRSFTFIIKTPPTSWLLKKAAG 98 (168)
T ss_pred eeEEEEeeccccccCCCCCCchhhhcchhHHHhchhhhhhhccccCCCccceeEeecCCCeEEEEecCCChHHHHHHHhC
Confidence 56899999999999999999999999999999999999999995 59999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeEeecHHHHHHHHHHhCCCCC--CcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478 888 VEKGSKDPKQQKVGKITIEQLRAIATEKLPDLN--CTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL 954 (954)
Q Consensus 888 ~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~--~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~ 954 (954)
++||+++|+++++|.||++||||||++|.+|.+ +.+|+++||+|+|||+||||+|+++++|+++|+|
T Consensus 99 v~KGs~~p~~~~vG~lTlkhvyeIAkiK~~D~~~q~~~lesi~rsiigtA~smGIkVvp~ile~q~k~L 167 (168)
T KOG3257|consen 99 VEKGSKDPGQEKVGMLTLKHVYEIAKIKLPDPNLQCTTLESICRSIIGTARSMGIKVVPPILEPQKKDL 167 (168)
T ss_pred cccCCCCCcceeeeeEEHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhCccccchhHhchhhhhh
Confidence 999999999999999999999999999999987 8999999999999999999999999999998864
No 13
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.3e-44 Score=419.82 Aligned_cols=288 Identities=23% Similarity=0.191 Sum_probs=206.5
Q ss_pred cccccc--CCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCC---C
Q 042478 129 SKNLST--ESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIM---D 203 (954)
Q Consensus 129 ~~~~w~--~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~---~ 203 (954)
++.+|+ .+..|+||+|||||||||++||+|.+.-+. .+....|....+.+.++. ... +.+++|.++.. +
T Consensus 303 ~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~---n~~el~GrdgiDdD~nG~--vdd-~~G~nfVd~~~~P~D 376 (639)
T PTZ00262 303 LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDV---NVKELHGRKGIDDDNNGN--VDD-EYGANFVNNDGGPMD 376 (639)
T ss_pred chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccc---ccccccCccccccccCCc--ccc-cccccccCCCCCCCC
Confidence 445665 456899999999999999999999865322 111111211000000000 011 23344554322 2
Q ss_pred CCCchhhhcccccccc------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCc
Q 042478 204 MINASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQ 276 (954)
Q Consensus 204 ~~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~ 276 (954)
.+|||| ||+|++++. +.||||+|+|+++|+++..| +..+++++||+||++.|++|||||||+.. + .
T Consensus 377 ~~GHGT-HVAGIIAA~gnN~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~----~-s- 449 (639)
T PTZ00262 377 DNYHGT-HVSGIISAIGNNNIGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDE----Y-S- 449 (639)
T ss_pred CCCcch-HHHHHHhccccCCCceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCC----c-c-
Confidence 238999 999987653 68999999999999998776 78899999999999999999999999864 2 2
Q ss_pred ccHHHHHHHHHHHCCCEEEEeCCCCCCCCCc--------------ccc----CCCceEEEcccccCCCccceeecCCCeE
Q 042478 277 RDSIAIGSFHAIAKGITVVSSAGNDGPVAQT--------------IVN----TAPWIITVGATTIDRAFPTAITLGNHQV 338 (954)
Q Consensus 277 ~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t--------------~~~----~ap~vitVgAs~~d~~~~~~~~lg~~~~ 338 (954)
..+..|+.+|.++||+||+||||+|+.... ++. ..|++|+|||++.+..
T Consensus 450 -~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~------------ 516 (639)
T PTZ00262 450 -GIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKN------------ 516 (639)
T ss_pred -HHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCC------------
Confidence 567889999999999999999999864321 111 2356677766432110
Q ss_pred EeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEec
Q 042478 339 LWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQF 418 (954)
Q Consensus 339 ~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~ 418 (954)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCce
Q 042478 419 HTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDI 498 (954)
Q Consensus 419 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I 498 (954)
.....+.||++|.. ++||+|||++|
T Consensus 517 ------------------------------------------------~~~s~s~~Snyg~~-------~VDIaAPG~dI 541 (639)
T PTZ00262 517 ------------------------------------------------NQYSLSPNSFYSAK-------YCQLAAPGTNI 541 (639)
T ss_pred ------------------------------------------------CcccccccccCCCC-------cceEEeCCCCe
Confidence 00113456666632 34999999999
Q ss_pred EecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCC
Q 042478 499 LSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDI 578 (954)
Q Consensus 499 ~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~ 578 (954)
+++++. +.|..++|||||||||||+||||++.+|+|++++|+++|++||.++... .+...
T Consensus 542 ~St~p~------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~--------------~n~~~ 601 (639)
T PTZ00262 542 YSTFPK------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL--------------KNKVK 601 (639)
T ss_pred eeccCC------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC--------------CCccc
Confidence 999987 7899999999999999999999999999999999999999999865211 11112
Q ss_pred CCCccCcccccCCCccccC
Q 042478 579 GGGHVNPNKAMNPGLVYDI 597 (954)
Q Consensus 579 GaG~vn~~~Al~pglvyd~ 597 (954)
++|+||+.+|++..+-+..
T Consensus 602 wgG~LDa~kAV~~Ai~~~~ 620 (639)
T PTZ00262 602 WGGYLDIHHAVNLAIASKH 620 (639)
T ss_pred cCcEEcHHHHHHHHHhccc
Confidence 2389999999986665533
No 14
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=8.1e-44 Score=388.79 Aligned_cols=271 Identities=27% Similarity=0.286 Sum_probs=201.0
Q ss_pred CCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccc
Q 042478 136 SNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGL 215 (954)
Q Consensus 136 ~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~ 215 (954)
+++|+||+|||||||||..||++.+-.-+ ..+..+.. ++. + ....+.+|||| |++|+
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~--~l~~~~~~------------~~~-------~-~~~~d~~gHGT-~vAgi 57 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG--DLPGNVNV------------LGD-------L-DGGSGGGDEGR-AMLEI 57 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC--CCCcceee------------ccc-------c-CCCCCCCchHH-HHHHH
Confidence 57899999999999999999865332111 11111110 000 0 11122237999 99998
Q ss_pred ccccceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHC-CCEE
Q 042478 216 AAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK-GITV 294 (954)
Q Consensus 216 a~G~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~-Gi~V 294 (954)
+ .||||+|+|+.+|+. ...+++++||+||++.|++|||||||...... +.+ ..+..++.++.++ |++|
T Consensus 58 i----~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~-~~~--~~~~~ai~~a~~~~Gvlv 126 (275)
T cd05562 58 I----HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPF-FQD--GPIAQAVDEVVASPGVLY 126 (275)
T ss_pred H----hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCc-ccC--CHHHHHHHHHHHcCCcEE
Confidence 5 599999999999875 35789999999999999999999999864221 233 5788899999987 9999
Q ss_pred EEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccC
Q 042478 295 VSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCR 373 (954)
Q Consensus 295 V~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~ 373 (954)
|+||||+|+... ..++..|++|+|||++.+....... |.
T Consensus 127 VaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s----------------------------------------~~ 166 (275)
T cd05562 127 FSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS----------------------------------------DP 166 (275)
T ss_pred EEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc----------------------------------------cc
Confidence 999999998543 3457789999999976432100000 00
Q ss_pred CCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCc
Q 042478 374 QGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPI 453 (954)
Q Consensus 374 ~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~ 453 (954)
+
T Consensus 167 --------------------~----------------------------------------------------------- 167 (275)
T cd05562 167 --------------------A----------------------------------------------------------- 167 (275)
T ss_pred --------------------c-----------------------------------------------------------
Confidence 0
Q ss_pred cccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCC-ceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHH
Q 042478 454 AKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGV-DILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAAL 532 (954)
Q Consensus 454 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aAL 532 (954)
........+.||++||+. ++.+||||+|||. ++.+.+.. +.|..++|||||||||||++||
T Consensus 168 ----------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~------~~~~~~sGTS~AaP~VaG~aAL 229 (275)
T cd05562 168 ----------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG------DGPPNFFGTSAAAPHAAGVAAL 229 (275)
T ss_pred ----------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC------CceeecccchHHHHHHHHHHHH
Confidence 000012245678899987 6789999999965 45666554 6899999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 533 IKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 533 l~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
|+|++|+|++++||++|++||+++.. ...+..||||+||+.+|++
T Consensus 230 l~~~~p~lt~~~v~~~L~~tA~~~~~-------------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 230 VLSANPGLTPADIRDALRSTALDMGE-------------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHhCCCCCHHHHHHHHHHhCcccCC-------------CCCCCCcCcCcccHHHHhh
Confidence 99999999999999999999996532 2245689999999999986
No 15
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.1e-43 Score=384.78 Aligned_cols=239 Identities=31% Similarity=0.412 Sum_probs=194.9
Q ss_pred ccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhc
Q 042478 133 STESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTD 212 (954)
Q Consensus 133 w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v 212 (954)
|..+++|+||+|||||||||.+||+|.+.... ..|. +. +...+..|||| |+
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~~~-----~~~~--------------~~---------~~~~d~~gHGT-~V 51 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVKER-----TNWT--------------NE---------KTLDDGLGHGT-FV 51 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccccc-----cccC--------------CC---------CCCCCCCCcHH-HH
Confidence 88999999999999999999999999742111 0110 00 01112237999 99
Q ss_pred ccccccc---ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHH
Q 042478 213 EGLAAGL---ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAI 288 (954)
Q Consensus 213 ~G~a~G~---~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~ 288 (954)
+|++++. ..||||+|+|+.+|++.+.+ +..++++++|+||+++++||||||||... +.+ .++..++.++.
T Consensus 52 AGiIa~~~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~----~~~--~~~~~~~~~~~ 125 (255)
T cd07479 52 AGVIASSREQCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD----FMD--KPFVDKVWELT 125 (255)
T ss_pred HHHHHccCCCceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC----CCC--cHHHHHHHHHH
Confidence 9987765 68999999999999998776 66778999999999999999999999864 444 67777888889
Q ss_pred HCCCEEEEeCCCCCCCCCc--cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCC
Q 042478 289 AKGITVVSSAGNDGPVAQT--IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDP 366 (954)
Q Consensus 289 ~~Gi~VV~AAGN~G~~~~t--~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~ 366 (954)
++|++||+||||+|+...+ .+...+++|+|||.+.
T Consensus 126 ~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------------------------------------- 162 (255)
T cd07479 126 ANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------------------------------------- 162 (255)
T ss_pred HCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------------------------------------
Confidence 9999999999999986544 3456688999997431
Q ss_pred CCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHH
Q 042478 367 DSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYI 446 (954)
Q Consensus 367 ~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~ 446 (954)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCccccCCCceeecccCCCcccccCCCCCCCC----CCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478 447 RRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSM----SPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS 522 (954)
Q Consensus 447 ~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA 522 (954)
.+.++.|||+|++.. ..+++||||.|||.+|+++... +.|..++|||||
T Consensus 163 ---------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~------~~~~~~sGTS~A 215 (255)
T cd07479 163 ---------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK------GGCRALSGTSVA 215 (255)
T ss_pred ---------------------CCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC------CCeEEeccHHHH
Confidence 234678999996531 2577899999999999998765 679999999999
Q ss_pred hHHHHHHHHHHHhhCC----CCCHHHHHHHHHhccccC
Q 042478 523 CPHVAGIAALIKSLHR----DWSPAAIRSALVTTASQT 556 (954)
Q Consensus 523 aP~VAG~aALl~q~~P----~~sp~~Iks~L~~TA~~~ 556 (954)
||||||++|||+|++| .++|++||++|++||+++
T Consensus 216 aP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 216 SPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred HHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccC
Confidence 9999999999999998 789999999999999965
No 16
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.7e-43 Score=411.01 Aligned_cols=392 Identities=23% Similarity=0.202 Sum_probs=231.2
Q ss_pred CCCCceEEEEEeCCCCCCCCCcCCC-CCCCCCCCCCcccccccCCCCCCCCCCccccceecccc--------C-------
Q 042478 137 NMGEGTIIGIIDTGVWPESESFSDK-GMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIK--------G------- 200 (954)
Q Consensus 137 ~~G~GVvVgVIDTGId~~Hp~f~d~-~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~--------~------- 200 (954)
.+|+||+|||||||||+.||+|++. +-. ++...|++....+... ....+..+|.+ .
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~t--Ri~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~ 72 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTT--RILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIV 72 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCc--hhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccC
Confidence 4799999999999999999999853 333 7788898876644321 11111211111 0
Q ss_pred -CCCCCCchhhhcccccccc------ceeccCCCcEEEEEEecCCC-----------CChHHHHHHHHHHhcC-----Cc
Q 042478 201 -IMDMINASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-----------CTDADVLKAFDKAIHD-----GV 257 (954)
Q Consensus 201 -~~~~~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-----------~~~~dil~Aid~Ai~d-----gv 257 (954)
..+.+|||| |++|+++|. +.||||+|+|+++|++...+ +..+++++||+|+++. .+
T Consensus 73 ~~~D~~GHGT-hvAGIiag~~~~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p 151 (455)
T cd07478 73 PSRDENGHGT-HVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKP 151 (455)
T ss_pred cCCCCCCchH-HHHHHHhcCCCCCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCC
Confidence 112238999 999998865 57999999999999998764 5688999999999874 46
Q ss_pred cEEEecccCCCCCCCccCcccHHHHHHHHHHHC-CCEEEEeCCCCCCCCCccccC-----CC--ceEEEcccccCCCccc
Q 042478 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK-GITVVSSAGNDGPVAQTIVNT-----AP--WIITVGATTIDRAFPT 329 (954)
Q Consensus 258 dVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~-Gi~VV~AAGN~G~~~~t~~~~-----ap--~vitVgAs~~d~~~~~ 329 (954)
+|||||||... + .+++.++++.++..+..+ |++||+||||+|......... .. --+.|+.. ++.+.-
T Consensus 152 ~VInlSlG~~~--g-~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~--~~~~~~ 226 (455)
T cd07478 152 LVINISLGTNF--G-SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEG--EKGFNL 226 (455)
T ss_pred eEEEEccCcCC--C-CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCC--CcceEE
Confidence 79999999875 2 333348899999888876 999999999999753333211 00 01222211 111100
Q ss_pred eeecCCCeEEeeeeeeccCcCCceeeeeecccccc-----CCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHH
Q 042478 330 AITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAF-----DPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAIS 404 (954)
Q Consensus 330 ~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~ 404 (954)
.+....- ...++....+.+...+.+....... .......|... ..+....|.-.+.-+ ..+
T Consensus 227 eiW~~~~---d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y-~~~~~~~g~~~i~i~----------~~~ 292 (455)
T cd07478 227 EIWGDFP---DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYY-YLPEPYTGDQLIFIR----------FKN 292 (455)
T ss_pred EEecCCC---CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEE-cCCCCCCCCeEEEEE----------ccC
Confidence 0000000 0001111111111111110000000 00000000000 001112222111111 111
Q ss_pred HHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCcc----ccCCCceeecccC-CCcccccCCCCC
Q 042478 405 VTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIA----KLSSPETVIGDLV-SPRVASFSSRGP 479 (954)
Q Consensus 405 ~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~----~i~~~~~~~~~~~-~~~~a~FSS~GP 479 (954)
...|.+-+.++...........++|.-.+..++..+ +.+....+. ......++..... .+.++.||||||
T Consensus 293 -~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f----~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~ 367 (455)
T cd07478 293 -IKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRF----LEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGP 367 (455)
T ss_pred -CCccceEEEEEeccCCCceEEEEecCcCcCCCCCEe----ecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCc
Confidence 123555555554433222222333433222222111 122222222 2222233433333 456999999999
Q ss_pred CCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhC------CCCCHHHHHHHHHhcc
Q 042478 480 NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH------RDWSPAAIRSALVTTA 553 (954)
Q Consensus 480 ~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~------P~~sp~~Iks~L~~TA 553 (954)
+. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+|.+ |.|++++||++|+.||
T Consensus 368 ~~--~~~~kpdi~APG~~i~s~~~~------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA 439 (455)
T cd07478 368 TR--DGRIKPDIAAPGVNILTASPG------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA 439 (455)
T ss_pred CC--CCCcCceEEecCCCEEEeecC------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhC
Confidence 98 799999999999999999986 789999999999999999999999865 6679999999999999
Q ss_pred ccCCCCCccccccCCCCCCCCCCCCCCC
Q 042478 554 SQTGTDGMNIFEEGSTRKEADPFDIGGG 581 (954)
Q Consensus 554 ~~~~~~g~pi~~~~~~~~~~~~~~~GaG 581 (954)
+++. ...+++.+||||
T Consensus 440 ~~~~------------~~~~pn~~~GyG 455 (455)
T cd07478 440 RRRP------------GDEYPNPEWGYG 455 (455)
T ss_pred ccCC------------CCCCCCCCCCCC
Confidence 9753 235678899998
No 17
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=8.8e-43 Score=395.05 Aligned_cols=298 Identities=29% Similarity=0.382 Sum_probs=226.7
Q ss_pred cccCCC-CCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCccccc----ccCCCCCCCCCCccccceeccccCCCCC--
Q 042478 132 LSTESN-MGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGIC----QKGEKFNSSNCNRKLIGARWFIKGIMDM-- 204 (954)
Q Consensus 132 ~w~~~~-~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~----~~~~~f~~~~cn~kiiga~~~~~~~~~~-- 204 (954)
+|+++. +|+||+|||||||||++||+|.+.... +..|+..+ .......+.+++.+++.+++|.++....
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDS----KAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILD 77 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCc----ccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCC
Confidence 688887 999999999999999999999865432 12221000 0111223456788999999888664332
Q ss_pred ----CCchhhhcccccccc---------ceeccCCCcEEEEEEecC--C-CCChHHHHHHHHHHhcCCccEEEecccCCC
Q 042478 205 ----INASTNTDEGLAAGL---------ARGGAPLAHLAIYKACWD--I-GCTDADVLKAFDKAIHDGVDVLSVSIGNEI 268 (954)
Q Consensus 205 ----~G~GTa~v~G~a~G~---------~~GvAP~A~L~~yKv~~~--~-g~~~~dil~Aid~Ai~dgvdVINlSlG~~~ 268 (954)
+|||| |++|+++|. +.||||+|+|+.+|+++. . .+...++++|+++|++.|++|||||||...
T Consensus 78 ~~~~~~HGT-~vagiiag~~~~~~~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~ 156 (346)
T cd07475 78 EDDGSSHGM-HVAGIVAGNGDEEDNGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTA 156 (346)
T ss_pred CCCCCCcHH-HHHHHHhcCCCccccCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 27999 999987653 489999999999999973 3 377888999999999999999999999975
Q ss_pred CCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCcc----------------ccCCCceEEEcccccCCCccceee
Q 042478 269 PLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTI----------------VNTAPWIITVGATTIDRAFPTAIT 332 (954)
Q Consensus 269 ~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~----------------~~~ap~vitVgAs~~d~~~~~~~~ 332 (954)
... ... ..+..++.++.++|++||+||||+|...... +...+++|+||+....
T Consensus 157 ~~~-~~~--~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~-------- 225 (346)
T cd07475 157 GFV-DLD--DPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK-------- 225 (346)
T ss_pred CCC-CCC--CHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc--------
Confidence 222 223 6788889999999999999999998653221 1223455555543200
Q ss_pred cCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceE
Q 042478 333 LGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVG 412 (954)
Q Consensus 333 lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~g 412 (954)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEE
Q 042478 413 LIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIV 492 (954)
Q Consensus 413 vi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~ 492 (954)
......+.++.||+|||+. +.++||||+
T Consensus 226 --------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~ 253 (346)
T cd07475 226 --------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDIT 253 (346)
T ss_pred --------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEE
Confidence 0012345678999999997 789999999
Q ss_pred ecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhccccCCCCCcccc
Q 042478 493 APGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSL----HRDWSPAA----IRSALVTTASQTGTDGMNIF 564 (954)
Q Consensus 493 APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~----~P~~sp~~----Iks~L~~TA~~~~~~g~pi~ 564 (954)
|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+....
T Consensus 254 apG~~i~s~~~~------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~----- 322 (346)
T cd07475 254 APGGNIYSTVND------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS----- 322 (346)
T ss_pred eCCCCeEEecCC------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-----
Confidence 999999999876 78999999999999999999999997 79999877 788999999842111
Q ss_pred ccCCCCCCCCCCCCCCCccCcccccC
Q 042478 565 EEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 565 ~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
......+.+..+|+|+||+.+|++
T Consensus 323 --~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 323 --EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred --CCCCccCCccccCcchhcHHHhhC
Confidence 113456778899999999999985
No 18
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.2e-43 Score=387.46 Aligned_cols=268 Identities=31% Similarity=0.311 Sum_probs=182.5
Q ss_pred CCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC----CCCCCCchhhhccc
Q 042478 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG----IMDMINASTNTDEG 214 (954)
Q Consensus 139 G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~----~~~~~G~GTa~v~G 214 (954)
|+||+|||||||||++||+|.++... .|.-.++ +...+..+.++..+ ..+.+|||| |++|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~------~~~~~~d---------~~~~~~~g~d~~~~~~~~~~D~~gHGT-hvAG 64 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF------SWKLKFD---------YKAYLLPGMDKWGGFYVIMYDFFSHGT-SCAS 64 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC------CcccccC---------cCCCccCCcCCCCCccCCCCCccccch-hHHH
Confidence 89999999999999999999654211 1111110 01112222222211 122348999 9999
Q ss_pred ccccc---------------ceeccCCCcEEEEEEecCCC-CChHHHHH-------HHHHH--hcCCccEEEecccCCCC
Q 042478 215 LAAGL---------------ARGGAPLAHLAIYKACWDIG-CTDADVLK-------AFDKA--IHDGVDVLSVSIGNEIP 269 (954)
Q Consensus 215 ~a~G~---------------~~GvAP~A~L~~yKv~~~~g-~~~~dil~-------Aid~A--i~dgvdVINlSlG~~~~ 269 (954)
+++|. +.||||+|+|+.+|+|+..+ +....+.+ +++|+ .++++||||||||....
T Consensus 65 iiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~ 144 (311)
T cd07497 65 VAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNF 144 (311)
T ss_pred HHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCC
Confidence 87764 47999999999999996543 33333333 34443 46899999999998641
Q ss_pred CCC-ccCcccHHHHHHHHH-HHCCCEEEEeCCCCCCCCCc--cccCCCceEEEcccccCCCccceeecCCCeEEeeeeee
Q 042478 270 LFS-YIDQRDSIAIGSFHA-IAKGITVVSSAGNDGPVAQT--IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSID 345 (954)
Q Consensus 270 ~~~-~~~~~d~~~~a~~~A-~~~Gi~VV~AAGN~G~~~~t--~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~ 345 (954)
... +..+.+..+..++.+ .++||++|+||||+|+...+ .+..++++|+|||++.....+..
T Consensus 145 ~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~--------------- 209 (311)
T cd07497 145 AYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY--------------- 209 (311)
T ss_pred CccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh---------------
Confidence 100 111113344444433 38999999999999987554 34578999999997532110000
Q ss_pred ccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCC
Q 042478 346 IGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDS 425 (954)
Q Consensus 346 ~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~ 425 (954)
.. +
T Consensus 210 ---------~~-------------------------------------~------------------------------- 212 (311)
T cd07497 210 ---------LF-------------------------------------G------------------------------- 212 (311)
T ss_pred ---------hh-------------------------------------c-------------------------------
Confidence 00 0
Q ss_pred CcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCC
Q 042478 426 CNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPI 505 (954)
Q Consensus 426 ~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 505 (954)
......+.++.||||||+. ++++||||+|||++|+++.+..
T Consensus 213 -------------------------------------~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~ 253 (311)
T cd07497 213 -------------------------------------YLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVL 253 (311)
T ss_pred -------------------------------------cccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccC
Confidence 0012345689999999998 7999999999999999987653
Q ss_pred CC----CCCCceEeecCCCchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 042478 506 GS----KDIQGYALLSGTSMSCPHVAGIAALIKSLHR------DWSPAAIRSALVTTA 553 (954)
Q Consensus 506 ~~----~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P------~~sp~~Iks~L~~TA 553 (954)
.. .....|..++|||||||||||++|||+|++| .++|++||.+|++||
T Consensus 254 ~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 254 DSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 21 1124799999999999999999999999876 689999999999997
No 19
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=6.6e-42 Score=372.65 Aligned_cols=243 Identities=26% Similarity=0.265 Sum_probs=198.2
Q ss_pred cccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhh
Q 042478 132 LSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNT 211 (954)
Q Consensus 132 ~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~ 211 (954)
+|..+.+|+||+|||||+|||++||+|.+..+. +....|. ......+..|||| |
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~--~~~~~~~-----------------------~~~~~~~~~gHGT-~ 55 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLT--PLFTYAA-----------------------AACQDGGASAHGT-H 55 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccc--cccCccc-----------------------cCCCCCCCCCcHH-H
Confidence 799999999999999999999999999865433 1111110 0011112237999 9
Q ss_pred cccccccc----ceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHH
Q 042478 212 DEGLAAGL----ARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSF 285 (954)
Q Consensus 212 v~G~a~G~----~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~ 285 (954)
++|+..|. +.||||+|+|+.+|++...+ ++..++++||+||+++|+||||||||...... ... ..+..++.
T Consensus 56 VAgii~g~~~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~-~~~--~~l~~a~~ 132 (267)
T cd07476 56 VASLIFGQPCSSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTG-EAD--PILANAVA 132 (267)
T ss_pred HHHHHhcCCCCCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCC-CCC--HHHHHHHH
Confidence 99987754 46999999999999997653 45788999999999999999999999764222 333 67888999
Q ss_pred HHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccC
Q 042478 286 HAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFD 365 (954)
Q Consensus 286 ~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~ 365 (954)
+|.++|++||+||||+|.....+++..|++|+|||++.+
T Consensus 133 ~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------------------- 171 (267)
T cd07476 133 MCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD----------------------------------------- 171 (267)
T ss_pred HHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-----------------------------------------
Confidence 999999999999999998877778888999999984311
Q ss_pred CCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHH
Q 042478 366 PDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSY 445 (954)
Q Consensus 366 ~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~ 445 (954)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHH
Q 042478 446 IRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPH 525 (954)
Q Consensus 446 ~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~ 525 (954)
+.++.||+||+.. .||||+|||.+|+++++. +.|..++||||||||
T Consensus 172 -----------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~------~~~~~~sGTS~AaP~ 217 (267)
T cd07476 172 -----------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG------GEVVRRSGTSFAAAI 217 (267)
T ss_pred -----------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC------CCeEEeccHHHHHHH
Confidence 2246789999864 378999999999999887 789999999999999
Q ss_pred HHHHHHHHHhhCCC----CCHHHHHHHHHhccccCCC
Q 042478 526 VAGIAALIKSLHRD----WSPAAIRSALVTTASQTGT 558 (954)
Q Consensus 526 VAG~aALl~q~~P~----~sp~~Iks~L~~TA~~~~~ 558 (954)
|||++|||+|++|. ++|++||++|++||++++.
T Consensus 218 vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 218 VAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred HHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 99999999999887 8999999999999998754
No 20
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.6e-42 Score=381.38 Aligned_cols=290 Identities=31% Similarity=0.403 Sum_probs=220.1
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS 208 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G 208 (954)
++.+|+.+++|+||+|||||+|||++||+|.+.......+...|+ ..++.+.. .+.... ..+..+.+|||
T Consensus 2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d---~~~~~~~~--~~~~~~-----~~~~~d~~gHG 71 (312)
T cd07489 2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYD---FVGDDYDG--TNPPVP-----DDDPMDCQGHG 71 (312)
T ss_pred hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccc---cCCccccc--ccCCCC-----CCCCCCCCCcH
Confidence 567999999999999999999999999999864222001111111 01111000 000000 00111123899
Q ss_pred hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478 209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI 282 (954)
Q Consensus 209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~ 282 (954)
| +++|++++. +.||||+|+|+.||++...+ ...+.++++|++|+++|++|||+|||... . +.. +.+..
T Consensus 72 T-~vAgiia~~~~~~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~--~-~~~--~~~~~ 145 (312)
T cd07489 72 T-HVAGIIAANPNAYGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS--G-WSE--DPWAV 145 (312)
T ss_pred H-HHHHHHhcCCCCCceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC--C-CCC--CHHHH
Confidence 9 999988775 57999999999999998655 67778999999999999999999999874 3 555 77888
Q ss_pred HHHHHHHCCCEEEEeCCCCCCCCC---ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeec
Q 042478 283 GSFHAIAKGITVVSSAGNDGPVAQ---TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYS 359 (954)
Q Consensus 283 a~~~A~~~Gi~VV~AAGN~G~~~~---t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~ 359 (954)
++.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 146 ~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------------------------- 188 (312)
T cd07489 146 VASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------------------------- 188 (312)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------------------------
Confidence 889999999999999999986532 3345667888888621
Q ss_pred cccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhH
Q 042478 360 ERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVG 439 (954)
Q Consensus 360 ~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g 439 (954)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCC
Q 042478 440 TQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGT 519 (954)
Q Consensus 440 ~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGT 519 (954)
+.||+|||+. +...||||+|||++++++++.. .+.|..++||
T Consensus 189 --------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~----~~~~~~~~GT 230 (312)
T cd07489 189 --------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA----GGGYAVLSGT 230 (312)
T ss_pred --------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC----CCceEeeccH
Confidence 4689999987 6889999999999999998762 1359999999
Q ss_pred CchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCc
Q 042478 520 SMSCPHVAGIAALIKSLH-RDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGL 593 (954)
Q Consensus 520 SMAaP~VAG~aALl~q~~-P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pgl 593 (954)
|||||+|||++|||+|++ |.+++.+|+++|++||..+...+..-. ....++...+|+|+||+.+|++..-
T Consensus 231 S~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~----~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 231 SMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSA----LPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCcc----ccCCCCHhhcCcceeeHHHHhcCCc
Confidence 999999999999999999 999999999999999997653321000 1123667899999999999999543
No 21
>PTZ00105 60S ribosomal protein L12; Provisional
Probab=100.00 E-value=2.7e-42 Score=331.47 Aligned_cols=128 Identities=23% Similarity=0.356 Sum_probs=123.6
Q ss_pred CCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhCCCCCCCCCCCc--eeEe
Q 042478 825 PPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQ--KVGK 902 (954)
Q Consensus 825 p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~~~~~~~~~~~~--~~g~ 902 (954)
++|||+|||+|||+|+|||+||++|++|+|++|||+|||| ||+|+|++ .||+|+||+|++|+++++++++++ ++|+
T Consensus 1 ~~lGPaLG~~GvNi~~fck~fN~~T~~~~G~~vpV~Itv~-drsf~~~v-~Pp~s~ll~k~ag~~~~~~~~~~~~~~vG~ 78 (140)
T PTZ00105 1 SSLAPKVGPLGLSPKKVGDDIAKATKDWKGLKVTVKLTVQ-NRQATVEV-VPTASSLLIKALKEPPRDRKKVKNIKHSGN 78 (140)
T ss_pred CCCccccccCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEE-CCEEEEEE-CCCHHHHHHHHhCCCCCCCCCCCcceeeeE
Confidence 5899999999999999999999999999999999999999 99999999 599999999999999899888876 9999
Q ss_pred ecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478 903 ITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL 954 (954)
Q Consensus 903 it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~ 954 (954)
||++||+|||++|++|+++++|+++||+|+||||||||+|+++.|++++++|
T Consensus 79 it~~qv~eIAk~K~~dl~~~~l~~a~k~V~GTarSmGi~V~gk~pkev~~~i 130 (140)
T PTZ00105 79 LTFDQVIKIARTMRPKSMAKTFKGTVKEVLGTCVSIGCTVDGESPRDIQEKI 130 (140)
T ss_pred eeHHHHHHHHHHHHhhhCCCcHHHHHHHHHhhheeeeEEEECCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998865
No 22
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-40 Score=368.95 Aligned_cols=285 Identities=37% Similarity=0.481 Sum_probs=206.2
Q ss_pred CCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccc
Q 042478 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAG 218 (954)
Q Consensus 139 G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G 218 (954)
|+||+|||||+|||++||+|.+..+....+...|+-........... -+... . -.....+.+|||| +++|+++|
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~---~~~~~~~~~~HGT-~vAgiiag 74 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTR-PYPSP-L---GDASAGDATGHGT-HVAGIIAG 74 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCCCCceeeeeECccCCCCccccc-ccccc-c---ccCCCCCCCCcHH-HHHHHHhc
Confidence 89999999999999999999754221001111111000000000000 00000 0 0000111237999 99998776
Q ss_pred c------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCC
Q 042478 219 L------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKG 291 (954)
Q Consensus 219 ~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~G 291 (954)
. +.|+||+|+|+.+|++...+ +...++++||+|+++++++|||||||... . ... +.+..++.++.++|
T Consensus 75 ~~~n~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~-~~~--~~~~~~~~~~~~~g 149 (295)
T cd07474 75 NGVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N-GPD--DPDAIAINNAVKAG 149 (295)
T ss_pred CCCccCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C-CCC--CHHHHHHHHHHhcC
Confidence 5 37999999999999997544 78899999999999999999999999874 2 223 77888999999999
Q ss_pred CEEEEeCCCCCCCCCcc--ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCC
Q 042478 292 ITVVSSAGNDGPVAQTI--VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSA 369 (954)
Q Consensus 292 i~VV~AAGN~G~~~~t~--~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~ 369 (954)
+++|+||||+|...... +...+++|+|||+....
T Consensus 150 il~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~-------------------------------------------- 185 (295)
T cd07474 150 VVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD-------------------------------------------- 185 (295)
T ss_pred CEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC--------------------------------------------
Confidence 99999999999765544 45678999999854110
Q ss_pred CccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhc
Q 042478 370 NDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRA 449 (954)
Q Consensus 370 ~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~ 449 (954)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCceeecccCCCcccccCCC-CCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHH
Q 042478 450 RSPIAKLSSPETVIGDLVSPRVASFSSR-GPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAG 528 (954)
Q Consensus 450 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~-GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG 528 (954)
.........|+++ |+.. ...+||||+|||++|++++... ...|..++|||||||+|||
T Consensus 186 ---------------~~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~----~~~~~~~~GTS~AaP~vaG 244 (295)
T cd07474 186 ---------------VAEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS----GTGYARMSGTSMAAPHVAG 244 (295)
T ss_pred ---------------cCCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC----CCceEEeccHHHHHHHHHH
Confidence 0011223344554 4444 7889999999999999998763 2579999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccc
Q 042478 529 IAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588 (954)
Q Consensus 529 ~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~A 588 (954)
++|||+|++|+|+|++||++|++||++.+..+. ...++..+|+|+||+.+|
T Consensus 245 ~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~---------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 245 AAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG---------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC---------CcCChhccCcceeccccC
Confidence 999999999999999999999999997654331 223567899999999886
No 23
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.6e-41 Score=358.35 Aligned_cols=231 Identities=29% Similarity=0.373 Sum_probs=187.6
Q ss_pred eEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccccc-
Q 042478 142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLA- 220 (954)
Q Consensus 142 VvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~~- 220 (954)
|+|||||||||++||+|.+.... .| .+. ..+..+.+|||| |++|++++..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~------~~--------~~~--------------~~~~~~~~~HGT-~vAgiia~~~~ 51 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA------RL--------FFA--------------GPGAPAPSAHGT-AVASLLAGAGA 51 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc------cc--------cCC--------------CCCCCCCCCCHH-HHHHHHhCCCC
Confidence 68999999999999999754322 00 000 001112237999 9999887764
Q ss_pred --eeccCCCcEEEEEEecCCC----CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEE
Q 042478 221 --RGGAPLAHLAIYKACWDIG----CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITV 294 (954)
Q Consensus 221 --~GvAP~A~L~~yKv~~~~g----~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~V 294 (954)
.|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||+.. . ..+..++.+|.++|++|
T Consensus 52 ~~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~--~------~~l~~ai~~a~~~gilv 123 (239)
T cd05561 52 QRPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP--N------ALLAAAVAAAAARGMVL 123 (239)
T ss_pred CCcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--C------HHHHHHHHHHHHCCCEE
Confidence 4999999999999998642 67788999999999999999999999753 2 56788889999999999
Q ss_pred EEeCCCCCCCC-CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccC
Q 042478 295 VSSAGNDGPVA-QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCR 373 (954)
Q Consensus 295 V~AAGN~G~~~-~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~ 373 (954)
|+||||+|+.. ..+++..|++|+|+|++.
T Consensus 124 v~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------------------------------------- 153 (239)
T cd05561 124 VAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------------------------------------- 153 (239)
T ss_pred EEecCCCCCCCCccCcccCCCceEEEeecC--------------------------------------------------
Confidence 99999999753 456677789999987431
Q ss_pred CCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCc
Q 042478 374 QGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPI 453 (954)
Q Consensus 374 ~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~ 453 (954)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHH
Q 042478 454 AKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALI 533 (954)
Q Consensus 454 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl 533 (954)
.+.++.||++|+.. ||.|||++|+++.+. +.|..++|||||||||||++|||
T Consensus 154 --------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~------~~~~~~sGTS~AaP~vaG~aAll 205 (239)
T cd05561 154 --------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPG------GGYRYVSGTSFAAPFVTAALALL 205 (239)
T ss_pred --------------CCCccccCCCCCcc--------eEEccccceecccCC------CCEEEeCCHHHHHHHHHHHHHHH
Confidence 13356799999976 999999999998876 78999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCC
Q 042478 534 KSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGG 581 (954)
Q Consensus 534 ~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG 581 (954)
+|++| +++++||++|++||++++.. ..+..||||
T Consensus 206 ~~~~p-~~~~~i~~~L~~ta~~~g~~-------------~~d~~~G~G 239 (239)
T cd05561 206 LQASP-LAPDDARARLAATAKDLGPP-------------GRDPVFGYG 239 (239)
T ss_pred HhcCC-CCHHHHHHHHHHHhhccCCC-------------CcCCCcCCC
Confidence 99999 99999999999999976433 335678987
No 24
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=4.4e-40 Score=363.44 Aligned_cols=253 Identities=26% Similarity=0.327 Sum_probs=185.2
Q ss_pred CceEEEEEeCCCCCCCCCcCCCCCC-CCCCCCCcccccccC---------CCCCCCCCCccccceeccccCC--------
Q 042478 140 EGTIIGIIDTGVWPESESFSDKGMG-QAPVPPHWKGICQKG---------EKFNSSNCNRKLIGARWFIKGI-------- 201 (954)
Q Consensus 140 ~GVvVgVIDTGId~~Hp~f~d~~~~-~~~~p~~~~g~~~~~---------~~f~~~~cn~kiiga~~~~~~~-------- 201 (954)
|+|+|||||||||++||+|++..|. ..++| .+|....+ .+|.+..+.+++++...+....
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~--~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~ 78 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIP--GNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDV 78 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccC--CCCccCCCCCccccccCeeccCCcccccccccCcccccccccccccc
Confidence 6899999999999999999876543 00111 12222222 2232222333333332222111
Q ss_pred C---CCCCchhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCC
Q 042478 202 M---DMINASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFS 272 (954)
Q Consensus 202 ~---~~~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~ 272 (954)
. +..|||| |++|++++. +.||||+|+|+.+|++........++++||+||++.|++|||||||... .
T Consensus 79 ~~~~~~~gHGT-~VAGiIaa~~~n~~g~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~~--~- 154 (291)
T cd07483 79 NGPISDADHGT-HVAGIIAAVRDNGIGIDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKSF--S- 154 (291)
T ss_pred CCCCCCCCcHH-HHHHHHhCcCCCCCceEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCCC--C-
Confidence 0 1227999 999987653 6799999999999998654467889999999999999999999999763 1
Q ss_pred ccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCcc-----------ccCCCceEEEcccccCCCccceeecCCCeEEee
Q 042478 273 YIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTI-----------VNTAPWIITVGATTIDRAFPTAITLGNHQVLWG 341 (954)
Q Consensus 273 ~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~-----------~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g 341 (954)
... ..+..++..|.++|+++|+||||+|.+.... +...+.+|+|||++...
T Consensus 155 ~~~--~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~---------------- 216 (291)
T cd07483 155 PNK--EWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY---------------- 216 (291)
T ss_pred Ccc--HHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC----------------
Confidence 222 4677788889999999999999999642211 11234566666532110
Q ss_pred eeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCC
Q 042478 342 QSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTD 421 (954)
Q Consensus 342 ~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~ 421 (954)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEec
Q 042478 422 GLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSA 501 (954)
Q Consensus 422 ~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa 501 (954)
....++.||++|+. +|||.|||++|+++
T Consensus 217 ---------------------------------------------~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~ 244 (291)
T cd07483 217 ---------------------------------------------ENNLVANFSNYGKK-------NVDVFAPGERIYST 244 (291)
T ss_pred ---------------------------------------------CcccccccCCCCCC-------ceEEEeCCCCeEec
Confidence 11236789999984 35999999999999
Q ss_pred CCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 502 YPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 502 ~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 245 ~~~------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 245 TPD------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred cCc------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 876 78999999999999999999999999999999999999999984
No 25
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.9e-40 Score=355.61 Aligned_cols=238 Identities=29% Similarity=0.361 Sum_probs=190.1
Q ss_pred ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCC----CCCchhhhccccc
Q 042478 141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMD----MINASTNTDEGLA 216 (954)
Q Consensus 141 GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~----~~G~GTa~v~G~a 216 (954)
||+|||||||||++||+|....+. ++.++.+.++|.++... .+|||| |++|+.
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~----------------------~~~~i~~~~~~~~~~~~~~~~~~~HGT-~vagii 57 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLF----------------------KNLRILGEYDFVDNSNNTNYTDDDHGT-AVLSTM 57 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccc----------------------cCCceeeeecCccCCCCCCCCCCCchh-hhheee
Confidence 799999999999999999532211 23455555656544322 237999 999987
Q ss_pred ccc----ceeccCCCcEEEEEEecCCC---CChHHHHHHHHHHhcCCccEEEecccCCCCCCCc------c---CcccHH
Q 042478 217 AGL----ARGGAPLAHLAIYKACWDIG---CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSY------I---DQRDSI 280 (954)
Q Consensus 217 ~G~----~~GvAP~A~L~~yKv~~~~g---~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~------~---~~~d~~ 280 (954)
+|. ..||||+|+|+.+|+..... ....+++.|++||.+.|++|||||||...... . . .....+
T Consensus 58 a~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~-~~~~~~~~~~~~~~~~l 136 (261)
T cd07493 58 AGYTPGVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDN-PTYSYTYADMDGKTSFI 136 (261)
T ss_pred eeCCCCCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC-cccccccccccccchHH
Confidence 664 68999999999999976432 34567899999999999999999999875111 1 0 001357
Q ss_pred HHHHHHHHHCCCEEEEeCCCCCCC---CCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeee
Q 042478 281 AIGSFHAIAKGITVVSSAGNDGPV---AQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLT 357 (954)
Q Consensus 281 ~~a~~~A~~~Gi~VV~AAGN~G~~---~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~ 357 (954)
..++..|.++|+++|+||||+|.. ....+...|++|+|||.+.
T Consensus 137 ~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------------------------------- 182 (261)
T cd07493 137 SRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------------------------------- 182 (261)
T ss_pred HHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------------------------------
Confidence 778889999999999999999977 3455677899999997431
Q ss_pred eccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehh
Q 042478 358 YSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE 437 (954)
Q Consensus 358 ~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~ 437 (954)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeec
Q 042478 438 VGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLS 517 (954)
Q Consensus 438 ~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~S 517 (954)
.+.++.||++||+. ++++||||+|||.+|++.... +.|..++
T Consensus 183 ------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~------~~~~~~s 224 (261)
T cd07493 183 ------------------------------NGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD------GNITYAN 224 (261)
T ss_pred ------------------------------CCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC------CcEEeeC
Confidence 12457899999987 789999999999999986654 6899999
Q ss_pred CCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 518 GTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 518 GTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 225 GTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 225 GTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999985
No 26
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=3.8e-39 Score=351.64 Aligned_cols=242 Identities=34% Similarity=0.357 Sum_probs=188.9
Q ss_pred CCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccc
Q 042478 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAG 218 (954)
Q Consensus 139 G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G 218 (954)
|+||+|||||||||++||+|.+. +. + .+.+......++.....+ .....+.+|||| |++|++.|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~-~~--~---~~~~~~~~~~~~~d~~~~---------~~~~~d~~~HGT-~vagii~g 64 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK-YR--G---WGGGSADHDYNWFDPVGN---------TPLPYDDNGHGT-HTMGTMVG 64 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc-cc--c---cCCCCcccccccccCCCC---------CCCCCCCCCchh-hhhhheee
Confidence 89999999999999999999864 21 0 000100000000000000 000111237999 99998765
Q ss_pred c-----ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc------------CCccEEEecccCCCCCCCccCcccHHH
Q 042478 219 L-----ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH------------DGVDVLSVSIGNEIPLFSYIDQRDSIA 281 (954)
Q Consensus 219 ~-----~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~------------dgvdVINlSlG~~~~~~~~~~~~d~~~ 281 (954)
. ..||||+|+|+.+|++...++...+++++++|+++ .|+||||||||... ... ..+.
T Consensus 65 ~~~~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~----~~~--~~~~ 138 (264)
T cd07481 65 NDGDGQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPS----GDN--EWLQ 138 (264)
T ss_pred cCCCCCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCC----CCc--hHHH
Confidence 3 47899999999999998877888999999999975 78999999999875 222 5566
Q ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCc---cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478 282 IGSFHAIAKGITVVSSAGNDGPVAQT---IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY 358 (954)
Q Consensus 282 ~a~~~A~~~Gi~VV~AAGN~G~~~~t---~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~ 358 (954)
.++..+.++|++||+||||+|.+... .++..|++|+|||.+.
T Consensus 139 ~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------------- 183 (264)
T cd07481 139 PAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR----------------------------------- 183 (264)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-----------------------------------
Confidence 77788889999999999999865433 4567789999997431
Q ss_pred ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478 359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV 438 (954)
Q Consensus 359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~ 438 (954)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecC
Q 042478 439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG 518 (954)
Q Consensus 439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SG 518 (954)
.+.++.||++||.. .+.+||||+|||.+|+++++. +.|..++|
T Consensus 184 -----------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~------~~~~~~~G 226 (264)
T cd07481 184 -----------------------------NDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG------GGYGSSSG 226 (264)
T ss_pred -----------------------------CCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC------CceEeeCc
Confidence 23467899999987 588999999999999999987 78999999
Q ss_pred CCchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 042478 519 TSMSCPHVAGIAALIKSLHRD--WSPAAIRSALVTTAS 554 (954)
Q Consensus 519 TSMAaP~VAG~aALl~q~~P~--~sp~~Iks~L~~TA~ 554 (954)
||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 227 TS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 227 TSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999 999999999999985
No 27
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=9.3e-39 Score=360.84 Aligned_cols=209 Identities=31% Similarity=0.355 Sum_probs=160.7
Q ss_pred Cchhhhcccccccc------ceeccCCCcEEEEEEecCCC---CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCc
Q 042478 206 NASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG---CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQ 276 (954)
Q Consensus 206 G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g---~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~ 276 (954)
|||| ||+|+++|. ..|+||+|+|+.+|+++... +...++++||++|++.|+||||||||... . +.+.
T Consensus 186 gHGT-hVAGIIAg~~~~~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG~~~--~-~~~~ 261 (412)
T cd04857 186 AHGT-HVAGIAAAHFPEEPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYGEAT--H-WPNS 261 (412)
T ss_pred CCHH-HHHHHHhCCCCCCCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCCcCC--C-Cccc
Confidence 6999 999988765 58999999999999986542 23467999999999999999999999875 2 2210
Q ss_pred ccHHHHHHHH-HHHCCCEEEEeCCCCCCCCCcccc---CCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCc
Q 042478 277 RDSIAIGSFH-AIAKGITVVSSAGNDGPVAQTIVN---TAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHG 352 (954)
Q Consensus 277 ~d~~~~a~~~-A~~~Gi~VV~AAGN~G~~~~t~~~---~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~ 352 (954)
..+..++.+ +.++||++|+||||+|+...++.. ..+.+|+|||.........
T Consensus 262 -~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~----------------------- 317 (412)
T cd04857 262 -GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAA----------------------- 317 (412)
T ss_pred -hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccc-----------------------
Confidence 234444544 447999999999999988776543 4689999998542210000
Q ss_pred eeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceE
Q 042478 353 FTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCI 432 (954)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~ 432 (954)
.|-+
T Consensus 318 ~y~~---------------------------------------------------------------------------- 321 (412)
T cd04857 318 EYSL---------------------------------------------------------------------------- 321 (412)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred EeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCc
Q 042478 433 KVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG 512 (954)
Q Consensus 433 ~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 512 (954)
.....+.++.||||||+. ++.+||||+|||++|.+.- ... ...
T Consensus 322 -------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p-~~~---~~~ 364 (412)
T cd04857 322 -------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVP-NWT---LQG 364 (412)
T ss_pred -------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcc-cCC---CCC
Confidence 001235588999999998 8999999999999998752 111 257
Q ss_pred eEeecCCCchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccc
Q 042478 513 YALLSGTSMSCPHVAGIAALIKS----LHRDWSPAAIRSALVTTASQ 555 (954)
Q Consensus 513 y~~~SGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~ 555 (954)
|..|+|||||||||||++|||++ .+|+|+|.+||.+|++||++
T Consensus 365 ~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 365 SQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411 (412)
T ss_pred eEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999999975 57999999999999999985
No 28
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-38 Score=347.65 Aligned_cols=247 Identities=31% Similarity=0.422 Sum_probs=196.4
Q ss_pred CCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccc
Q 042478 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAG 218 (954)
Q Consensus 139 G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G 218 (954)
|+||+|+|||+|||++||+|.+.... .|...... .......+..|||| +++|+++|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~------~~~~~~~~-----------------~~~~~~~d~~~HGT-~vAgiiag 56 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR------FADFVNTV-----------------NGRTTPYDDNGHGT-HVAGIIAG 56 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc------cccccccc-----------------cCCCCCCCCCCchH-HHHHHHhc
Confidence 89999999999999999999865332 11110000 00001111227999 99998776
Q ss_pred c-------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC----CccEEEecccCCCCCCCccCcccHHHHHHHH
Q 042478 219 L-------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD----GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFH 286 (954)
Q Consensus 219 ~-------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d----gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~ 286 (954)
. ..|+||+|+|+.+|+++..+ +...++++||+|+++. +++|||+|||...... +.. +.+..++.+
T Consensus 57 ~~~~~~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~-~~~--~~~~~~~~~ 133 (264)
T cd07487 57 SGRASNGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPS-YGE--DPLCQAVER 133 (264)
T ss_pred CCcccCCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCC-CCC--CHHHHHHHH
Confidence 5 79999999999999998776 6778999999999998 9999999999875322 344 788999999
Q ss_pred HHHCCCEEEEeCCCCCCCCC--ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccccc
Q 042478 287 AIAKGITVVSSAGNDGPVAQ--TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAF 364 (954)
Q Consensus 287 A~~~Gi~VV~AAGN~G~~~~--t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~ 364 (954)
+.++|++||+||||+|.... ..+...+++|+|||.+.+..
T Consensus 134 ~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------------------------------------- 175 (264)
T cd07487 134 LWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP-------------------------------------- 175 (264)
T ss_pred HHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC--------------------------------------
Confidence 99999999999999998765 45567889999998543210
Q ss_pred CCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHH
Q 042478 365 DPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILS 444 (954)
Q Consensus 365 ~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~ 444 (954)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCC---CCCCCceEeecCCCc
Q 042478 445 YIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG---SKDIQGYALLSGTSM 521 (954)
Q Consensus 445 ~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~---~~~~~~y~~~SGTSM 521 (954)
....++.||++||+. ++++||||+|||++|+++++... ....+.|..++||||
T Consensus 176 ----------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~ 231 (264)
T cd07487 176 ----------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSM 231 (264)
T ss_pred ----------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEeccccch
Confidence 002367899999997 78999999999999999754321 111368999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
|||+|||++|||+|++|.+++.+||++|++||+
T Consensus 232 Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 232 ATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999985
No 29
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-38 Score=349.79 Aligned_cols=253 Identities=26% Similarity=0.344 Sum_probs=181.5
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS 208 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G 208 (954)
+..+|+.+.+|+||+|||||||||..|| |.+.++. +...... + ..+...+.+|||
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~---------~~~~~~~------------~---~~~~~~D~~gHG 64 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ---------VRVVLAP------------G---ATDPACDENGHG 64 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc---------ceeecCC------------C---CCCCCCCCCCcc
Confidence 5689999999999999999999999998 7644332 1000000 0 011122233899
Q ss_pred hhhccccccccceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCC--c----cCcccHHHH
Q 042478 209 TNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFS--Y----IDQRDSIAI 282 (954)
Q Consensus 209 Ta~v~G~a~G~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~--~----~~~~d~~~~ 282 (954)
| |++|+ +.||||+|+|+.||+++. ..+++++||+||+++|+||||||||....... | ......+..
T Consensus 65 T-~vag~----i~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ 136 (298)
T cd07494 65 T-GESAN----LFAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAA 136 (298)
T ss_pred h-heeec----eeEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHH
Confidence 9 88875 579999999999999854 56789999999999999999999998641110 1 000135778
Q ss_pred HHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478 283 GSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI 362 (954)
Q Consensus 283 a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~ 362 (954)
++..|.++|++||+||||++. .+++..|++|+|||++.+.. +...
T Consensus 137 ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~~----------------------- 181 (298)
T cd07494 137 TLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GARR----------------------- 181 (298)
T ss_pred HHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Cccc-----------------------
Confidence 888999999999999999984 46888999999999754421 0000
Q ss_pred ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478 363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI 442 (954)
Q Consensus 363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l 442 (954)
T Consensus 182 -------------------------------------------------------------------------------- 181 (298)
T cd07494 182 -------------------------------------------------------------------------------- 181 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeE----------------EecCCceEecCCCC-
Q 042478 443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDI----------------VAPGVDILSAYPPI- 505 (954)
Q Consensus 443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI----------------~APG~~I~sa~~~~- 505 (954)
.....+.|+| . ..+++.|||+ +|||..|.+++...
T Consensus 182 ------------------------~~~~~~~~~s---~-~~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~ 233 (298)
T cd07494 182 ------------------------ASSYASGFRS---K-IYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFP 233 (298)
T ss_pred ------------------------ccccccCccc---c-cCCCCccCccccccCcCCcccccccccCCCcceeccccCCC
Confidence 0000011111 1 1245556665 47999997655321
Q ss_pred -CCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 042478 506 -GSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTG 557 (954)
Q Consensus 506 -~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~ 557 (954)
....++.|..++|||||||||||++|||+|++|.|++++||.+|+.||+++.
T Consensus 234 ~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 234 DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVT 286 (298)
T ss_pred CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccC
Confidence 1111367999999999999999999999999999999999999999999653
No 30
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=2.5e-38 Score=346.86 Aligned_cols=251 Identities=29% Similarity=0.301 Sum_probs=193.1
Q ss_pred ccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhh
Q 042478 131 NLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTN 210 (954)
Q Consensus 131 ~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa 210 (954)
.+|..+.+|+||+|||||||||++||+|.+.... ..++ .+..+..+. ++. + .......+.+||||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-----~~~~-~~~~~~~~~---~~~---~--~~~~~~~~~~gHGT- 65 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-----DGYD-PAVNGYNFV---PNV---G--DIDNDVSVGGGHGT- 65 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-----CCcc-cccCCcccc---ccc---C--CcCCCCCCCCCCHH-
Confidence 3799999999999999999999999999876211 0000 000000000 000 0 00111122238999
Q ss_pred hcccccccc-----c-------eeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcc
Q 042478 211 TDEGLAAGL-----A-------RGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQR 277 (954)
Q Consensus 211 ~v~G~a~G~-----~-------~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~ 277 (954)
|++|++++. . .|+||+|+|+.+|++...+ +...++++||+||++.|++|||||||.... . .+.
T Consensus 66 ~VAgiia~~~~~~~~~g~i~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~-~-~~~-- 141 (273)
T cd07485 66 HVAGTIAAVNNNGGGVGGIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGG-G-IYS-- 141 (273)
T ss_pred HHHHHHHcccCCCcceeccccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCc-c-ccC--
Confidence 999987652 2 3499999999999998754 778889999999999999999999998742 2 333
Q ss_pred cHHHHHHHHHHHC-------CCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcC
Q 042478 278 DSIAIGSFHAIAK-------GITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVS 350 (954)
Q Consensus 278 d~~~~a~~~A~~~-------Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~ 350 (954)
..+..++..+.++ |+++|+||||+|......++..|++|+||+++.
T Consensus 142 ~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~--------------------------- 194 (273)
T cd07485 142 PLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT--------------------------- 194 (273)
T ss_pred HHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC---------------------------
Confidence 6677888888888 999999999999887666788899999997431
Q ss_pred CceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccc
Q 042478 351 HGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIP 430 (954)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip 430 (954)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCC-ceEecCCCCCCCC
Q 042478 431 CIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGV-DILSAYPPIGSKD 509 (954)
Q Consensus 431 ~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~ 509 (954)
.+.++.||++|+.. ||+|||. .|+++++......
T Consensus 195 -------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~~~ 229 (273)
T cd07485 195 -------------------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDG 229 (273)
T ss_pred -------------------------------------CCCcCccccCCCce--------EEEeCCCCccccccccccCCC
Confidence 13356899999987 9999999 9999887643222
Q ss_pred CCceEeecCCCchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 042478 510 IQGYALLSGTSMSCPHVAGIAALIKSLHRD-WSPAAIRSALVTT 552 (954)
Q Consensus 510 ~~~y~~~SGTSMAaP~VAG~aALl~q~~P~-~sp~~Iks~L~~T 552 (954)
.+.|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 230 ~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 230 GGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 467999999999999999999999999999 9999999999986
No 31
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=7.5e-38 Score=339.69 Aligned_cols=229 Identities=35% Similarity=0.433 Sum_probs=191.9
Q ss_pred cccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC--CCCCCCchh
Q 042478 132 LSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG--IMDMINAST 209 (954)
Q Consensus 132 ~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~--~~~~~G~GT 209 (954)
.|..+++|+||+|||||+||+++||+|.+.... +..| ..+ ..+..||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~--------------~~~~---------------~~~~~~~d~~~HGT 67 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAIW--------------GADF---------------VGGDPDSDCNGHGT 67 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCeee--------------eeec---------------CCCCCCCCCCccHH
Confidence 677889999999999999999999999754221 0001 111 122238999
Q ss_pred hhccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC-----CccEEEecccCCCCCCCccCcccHHHHH
Q 042478 210 NTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD-----GVDVLSVSIGNEIPLFSYIDQRDSIAIG 283 (954)
Q Consensus 210 a~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d-----gvdVINlSlG~~~~~~~~~~~~d~~~~a 283 (954)
+++|++++...||||+|+|+.+|+++..+ ...++++++++|++++ +++|||+|||... . ..+..+
T Consensus 68 -~vAgiia~~~~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~--~------~~~~~~ 138 (255)
T cd04077 68 -HVAGTVGGKTYGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA--S------TALDAA 138 (255)
T ss_pred -HHHHHHHccccCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--C------HHHHHH
Confidence 99999999889999999999999998775 6778999999999987 4899999999874 2 567788
Q ss_pred HHHHHHCCCEEEEeCCCCCCCC-CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478 284 SFHAIAKGITVVSSAGNDGPVA-QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI 362 (954)
Q Consensus 284 ~~~A~~~Gi~VV~AAGN~G~~~-~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~ 362 (954)
+.++.++|+++|+||||+|.+. ...++..|++|+|||.+.+
T Consensus 139 ~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~-------------------------------------- 180 (255)
T cd04077 139 VAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD-------------------------------------- 180 (255)
T ss_pred HHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC--------------------------------------
Confidence 8999999999999999999765 4556778999999975321
Q ss_pred ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478 363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI 442 (954)
Q Consensus 363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l 442 (954)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478 443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS 522 (954)
Q Consensus 443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA 522 (954)
+..+.||++||.. ||+|||.+|.++.... ++.|..++|||||
T Consensus 181 --------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~----~~~~~~~~GTS~A 222 (255)
T cd04077 181 --------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS----DTATATLSGTSMA 222 (255)
T ss_pred --------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC----CCcEEeeCcHHHH
Confidence 2257899999987 9999999999988741 2689999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
||+|||++|||+|++|++++++||++|++||+
T Consensus 223 ap~vaG~~All~~~~p~~~~~~v~~~L~~tA~ 254 (255)
T cd04077 223 APHVAGLAAYLLSLGPDLSPAEVKARLLNLAT 254 (255)
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHhhcc
Confidence 99999999999999999999999999999997
No 32
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-38 Score=341.84 Aligned_cols=332 Identities=27% Similarity=0.337 Sum_probs=253.6
Q ss_pred cCCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCcccc--ccc----------------cEEEEEc---cceeEEEEEc
Q 042478 29 GATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEA--AKH----------------SILYSYK---HGFSGFAARL 87 (954)
Q Consensus 29 ~~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~--~~~----------------~i~~~y~---~~~nGfs~~l 87 (954)
......|||.++.. .++...+.|.+|++........ ... .+.+.|. ..|+|+.-.+
T Consensus 77 ~~~~~~YiV~f~~~---~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~f 153 (501)
T KOG1153|consen 77 EALPSRYIVVFKPD---ASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYF 153 (501)
T ss_pred cccccceEEEeCCC---ccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccc
Confidence 44578999999953 3344567888888876642111 000 1333333 2788999999
Q ss_pred CHHHHHHHHcCCCeeEEEeCceeeccc--------ccccccccccccc-----CccccccCCCCCCceEEEEEeCCCCCC
Q 042478 88 TKTQAEKIAELPGVVQVIPNGILKLHT--------TRSWEFMGLHYYQ-----SSKNLSTESNMGEGTIIGIIDTGVWPE 154 (954)
Q Consensus 88 ~~~~~~~L~~~p~V~~V~~~~~~~l~t--------~~s~~~~gl~~~~-----~~~~~w~~~~~G~GVvVgVIDTGId~~ 154 (954)
+.+-+..++..|-++.++++..++... .-.|.+..+.... .......+-..|+||...|+||||+.+
T Consensus 154 t~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~ 233 (501)
T KOG1153|consen 154 TGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIE 233 (501)
T ss_pred ccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccc
Confidence 999999999999999999998776433 2345433332211 011111223479999999999999999
Q ss_pred CCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccccceeccCCCcEEEEEE
Q 042478 155 SESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKA 234 (954)
Q Consensus 155 Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~~~GvAP~A~L~~yKv 234 (954)
||+|.++. .| |.|-.. .+...+.+|||| |++|+.+|+..|||.+++|+++||
T Consensus 234 H~dFegRa--------~w-Ga~i~~------------------~~~~~D~nGHGT-H~AG~I~sKt~GvAK~s~lvaVKV 285 (501)
T KOG1153|consen 234 HPDFEGRA--------IW-GATIPP------------------KDGDEDCNGHGT-HVAGLIGSKTFGVAKNSNLVAVKV 285 (501)
T ss_pred ccccccce--------ec-ccccCC------------------CCcccccCCCcc-eeeeeeeccccccccccceEEEEE
Confidence 99998763 22 222110 011122238999 999999999999999999999999
Q ss_pred ecCCC-CChHHHHHHHHHHhcC---------CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCC
Q 042478 235 CWDIG-CTDADVLKAFDKAIHD---------GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPV 304 (954)
Q Consensus 235 ~~~~g-~~~~dil~Aid~Ai~d---------gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~ 304 (954)
++++| +..+++++++|++++. +..|.|||+|+.. . -.+..|+++|.+.||++++||||+-.+
T Consensus 286 l~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~--S------~aLn~AV~~A~~~Gi~fa~AAGNe~eD 357 (501)
T KOG1153|consen 286 LRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR--S------AALNMAVNAASERGIHFAVAAGNEHED 357 (501)
T ss_pred eccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc--c------HHHHHHHHHHhhcCeEEEEcCCCcchh
Confidence 99998 8999999999999986 5689999999985 2 568899999999999999999999877
Q ss_pred CC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCccccc
Q 042478 305 AQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAA 383 (954)
Q Consensus 305 ~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~ 383 (954)
.+ +.++.+..+|||||++..
T Consensus 358 AC~~SPass~~aITVGAst~~----------------------------------------------------------- 378 (501)
T KOG1153|consen 358 ACNSSPASSKKAITVGASTKN----------------------------------------------------------- 378 (501)
T ss_pred hhccCcccccccEEecccccc-----------------------------------------------------------
Confidence 55 455788899999997522
Q ss_pred ceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceee
Q 042478 384 GKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVI 463 (954)
Q Consensus 384 Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~ 463 (954)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCC----
Q 042478 464 GDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRD---- 539 (954)
Q Consensus 464 ~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~---- 539 (954)
+.+|.||+||+++ ||.|||++|+|+|.+. ...-.+.||||||+|||||++|..++.+|.
T Consensus 379 -----D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs----~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~ 441 (501)
T KOG1153|consen 379 -----DTIAFFSNWGKCV--------DIFAPGVNILSSWIGS----NNATAILSGTSMASPHVAGLAAYFLSLGPLPDSS 441 (501)
T ss_pred -----cchhhhcCcccee--------eeecCchhhhhhhhcC----ccchheeecccccCcchhhhHHHhhhcCCCChHH
Confidence 4578999999999 9999999999999873 246789999999999999999999999883
Q ss_pred -----CCHHHHHHHHHhcccc
Q 042478 540 -----WSPAAIRSALVTTASQ 555 (954)
Q Consensus 540 -----~sp~~Iks~L~~TA~~ 555 (954)
.||.++|..+..-..+
T Consensus 442 f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 442 FANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred hhhccCChHHhhhhhhccccc
Confidence 3888998888776654
No 33
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.5e-37 Score=338.29 Aligned_cols=235 Identities=32% Similarity=0.411 Sum_probs=193.9
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS 208 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G 208 (954)
...+|..+ +|+||+|||||+|||++||+|....+. ..| ++ ++.. .+..+..|||
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~~-----~~~--------~~----~~~~--------~~~~d~~~HG 71 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKFV-----LGY--------DF----VDND--------SDAMDDNGHG 71 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCCcc-----cce--------ec----cCCC--------CCCCCCCCcH
Confidence 56789988 999999999999999999998433221 001 00 1000 0011123799
Q ss_pred hhhcccccccc------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHH
Q 042478 209 TNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIA 281 (954)
Q Consensus 209 Ta~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~ 281 (954)
| +++|++.+. +.|+||+|+|+.+|+++..+ +...++++||+++++.|++|||+|||... .. ..+.
T Consensus 72 T-~vagii~~~~~~~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~-----~~--~~~~ 143 (260)
T cd07484 72 T-HVAGIIAAATNNGTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGL-----GS--TALQ 143 (260)
T ss_pred H-HHHHHHhCccCCCCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCC-----CC--HHHH
Confidence 9 999987653 68999999999999998765 78889999999999999999999999874 22 5677
Q ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccc
Q 042478 282 IGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSER 361 (954)
Q Consensus 282 ~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~ 361 (954)
.++..+.++|++||+||||+|.....+++..|++|+||+.+.+
T Consensus 144 ~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------------- 186 (260)
T cd07484 144 EAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------------------------------- 186 (260)
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-------------------------------------
Confidence 8888899999999999999998888888899999999974321
Q ss_pred cccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHH
Q 042478 362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQ 441 (954)
Q Consensus 362 ~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~ 441 (954)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCc
Q 042478 442 ILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSM 521 (954)
Q Consensus 442 l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSM 521 (954)
+..+.||++|+.. |++|||.+|++..+. +.|..++||||
T Consensus 187 ---------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------~~~~~~~GTS~ 225 (260)
T cd07484 187 ---------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD------GDYAYMSGTSM 225 (260)
T ss_pred ---------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC------CCEEEeeeHHH
Confidence 2356789999876 999999999999876 68999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478 522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT 556 (954)
Q Consensus 522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~ 556 (954)
|||+|||++||+++++| |++.+||++|++||+++
T Consensus 226 Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 226 ATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999999999999 99999999999999864
No 34
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.6e-38 Score=345.37 Aligned_cols=250 Identities=24% Similarity=0.241 Sum_probs=180.5
Q ss_pred EEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC-CCCCCCchhhhccccccc---
Q 042478 143 IIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG-IMDMINASTNTDEGLAAG--- 218 (954)
Q Consensus 143 vVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~-~~~~~G~GTa~v~G~a~G--- 218 (954)
+|||||||||..||+|.+.... +. .+ +. ..+ ..+.+|||| |++|++++
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~~-------~~-------~~----~~---------~~~~~~d~~gHGT-~vAgiia~~~~ 53 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALAE-------DD-------LD----SD---------EPGWTADDLGHGT-AVAGLALYGDL 53 (291)
T ss_pred EEEEecCCCCCCChhhhhhhcc-------cc-------cc----cc---------CCCCcCCCCCChH-HHHHHHHcCcc
Confidence 7999999999999999754221 00 00 00 000 112238999 99998764
Q ss_pred ---cceeccCCCcEEEEEEecCCC-----CChHHHHHHHHHHhcC---CccEEEecccCCCCCCCccCcccHHHHHHHH-
Q 042478 219 ---LARGGAPLAHLAIYKACWDIG-----CTDADVLKAFDKAIHD---GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFH- 286 (954)
Q Consensus 219 ---~~~GvAP~A~L~~yKv~~~~g-----~~~~dil~Aid~Ai~d---gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~- 286 (954)
...|+||+|+|+.+||+...| .+..++++||+||++. +++|||||||..... .......+..++++
T Consensus 54 ~~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~--~~~~~~~~~~~id~~ 131 (291)
T cd04847 54 TLPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPI--DDGRPSSWAAALDQL 131 (291)
T ss_pred cCCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCc--cCCCCCcHHHHHHHH
Confidence 257999999999999998763 4667899999999985 359999999997521 11101245666654
Q ss_pred HHHCCCEEEEeCCCCCCCCCc------------cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCcee
Q 042478 287 AIAKGITVVSSAGNDGPVAQT------------IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT 354 (954)
Q Consensus 287 A~~~Gi~VV~AAGN~G~~~~t------------~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~ 354 (954)
+.++|++||+||||+|..... .+...+++|+|||.+.+........
T Consensus 132 a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~---------------------- 189 (291)
T cd04847 132 AAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR---------------------- 189 (291)
T ss_pred hccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc----------------------
Confidence 568999999999999977543 2355789999999765432100000
Q ss_pred eeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEe
Q 042478 355 GLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKV 434 (954)
Q Consensus 355 ~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i 434 (954)
. +
T Consensus 190 -------------------~-------------------~---------------------------------------- 191 (291)
T cd04847 190 -------------------Y-------------------S---------------------------------------- 191 (291)
T ss_pred -------------------c-------------------c----------------------------------------
Confidence 0 0
Q ss_pred ehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCC---------
Q 042478 435 NYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPI--------- 505 (954)
Q Consensus 435 ~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~--------- 505 (954)
.......+.||+|||.. ++.+||||+|||++|.+..+..
T Consensus 192 ------------------------------~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~ 239 (291)
T cd04847 192 ------------------------------AVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLL 239 (291)
T ss_pred ------------------------------ccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceee
Confidence 00011123499999998 8999999999999998764321
Q ss_pred ---CCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 506 ---GSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 506 ---~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
.......|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 240 ~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 240 TTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 1112478999999999999999999999999999999999999999984
No 35
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.5e-37 Score=342.26 Aligned_cols=265 Identities=32% Similarity=0.351 Sum_probs=198.7
Q ss_pred CCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccc
Q 042478 135 ESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEG 214 (954)
Q Consensus 135 ~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G 214 (954)
.+++|+||+|||||||||++||+|.+.... +..+ .++++.....+....++.+|||| |++|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~--------------~~~~----~~~~~~~~~~~~~~~~d~~~HGT-~vAg 62 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN--------------KTNL----FHRKIVRYDSLSDTKDDVDGHGT-HVAG 62 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC--------------cCcc----CcccEEEeeccCCCCCCCCCCcc-hhhe
Confidence 578999999999999999999999754221 0011 23444444444443334448999 9999
Q ss_pred cccc---------cceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHH
Q 042478 215 LAAG---------LARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIG 283 (954)
Q Consensus 215 ~a~G---------~~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a 283 (954)
++++ .+.|+||+|+|+.+|+++..+ ....++..+++++.+.|++|||+|||...... + .....+
T Consensus 63 iia~~~~~~~~~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~--~---~~~~~~ 137 (293)
T cd04842 63 IIAGKGNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG--Y---TLLARA 137 (293)
T ss_pred eeccCCcCCCcccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc--c---chHHHH
Confidence 8876 469999999999999998765 56677899999999999999999999975211 1 334445
Q ss_pred HHHHH-H-CCCEEEEeCCCCCCCCC---ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478 284 SFHAI-A-KGITVVSSAGNDGPVAQ---TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY 358 (954)
Q Consensus 284 ~~~A~-~-~Gi~VV~AAGN~G~~~~---t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~ 358 (954)
+.++. + +|+++|+||||+|.... ..+...+++|+|||++.+.....
T Consensus 138 ~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~----------------------------- 188 (293)
T cd04842 138 YDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG----------------------------- 188 (293)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-----------------------------
Confidence 55444 3 79999999999997764 56678899999999764431000
Q ss_pred ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478 359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV 438 (954)
Q Consensus 359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~ 438 (954)
..|..
T Consensus 189 -----------~~~~~---------------------------------------------------------------- 193 (293)
T cd04842 189 -----------EGGLG---------------------------------------------------------------- 193 (293)
T ss_pred -----------ccccc----------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCC---CCCCCCceEe
Q 042478 439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPI---GSKDIQGYAL 515 (954)
Q Consensus 439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~---~~~~~~~y~~ 515 (954)
.......++.||++||+. ++++||||+|||++|+++++.. .......|..
T Consensus 194 -------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~ 246 (293)
T cd04842 194 -------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTS 246 (293)
T ss_pred -------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhheee
Confidence 012235688999999987 7899999999999999997542 0111367999
Q ss_pred ecCCCchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 042478 516 LSGTSMSCPHVAGIAALIKSLH-----R---DWSPAAIRSALVTTAS 554 (954)
Q Consensus 516 ~SGTSMAaP~VAG~aALl~q~~-----P---~~sp~~Iks~L~~TA~ 554 (954)
++|||||||||||++|||+|++ | .+++.++|++|++||+
T Consensus 247 ~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 247 KSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 9999999999999999999985 4 6677899999999985
No 36
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.9e-37 Score=332.98 Aligned_cols=248 Identities=31% Similarity=0.399 Sum_probs=183.2
Q ss_pred ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc-
Q 042478 141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL- 219 (954)
Q Consensus 141 GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~- 219 (954)
||+|||||||||++||+|.+.... |. .|... + .+......+.+|||| +++|++++.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~~-------~~-------~~~~~---~-----~~~~~~~~d~~~HGT-~vAgiia~~~ 57 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVAQ-------WA-------DFDEN---R-----RISATEVFDAGGHGT-HVSGTIGGGG 57 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccCC-------ce-------eccCC---C-----CCCCCCCCCCCCcHH-HHHHHHhcCC
Confidence 799999999999999999754211 11 11100 0 000011112237999 999987664
Q ss_pred ----ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHH-CCCEE
Q 042478 220 ----ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIA-KGITV 294 (954)
Q Consensus 220 ----~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~-~Gi~V 294 (954)
..|+||+|+|+.+|++...++..+++++||+||++.+++|||||||... ... +++..+++.+.+ +|++|
T Consensus 58 ~~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~----~~~--~~~~~~~~~~~~~~g~lv 131 (254)
T cd07490 58 AKGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTY----YSE--DPLEEAVEALSNQTGALF 131 (254)
T ss_pred CCCCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCC----CCC--cHHHHHHHHHHHcCCCEE
Confidence 6799999999999999877788899999999999999999999999875 223 667766666554 69999
Q ss_pred EEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCC
Q 042478 295 VSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQ 374 (954)
Q Consensus 295 V~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~ 374 (954)
|+||||+|......+...|++|+|||++.+........
T Consensus 132 V~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~------------------------------------------ 169 (254)
T cd07490 132 VVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS------------------------------------------ 169 (254)
T ss_pred EEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC------------------------------------------
Confidence 99999999887777788899999999754321000000
Q ss_pred CCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCcc
Q 042478 375 GSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIA 454 (954)
Q Consensus 375 ~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~ 454 (954)
T Consensus 170 -------------------------------------------------------------------------------- 169 (254)
T cd07490 170 -------------------------------------------------------------------------------- 169 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHH
Q 042478 455 KLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIK 534 (954)
Q Consensus 455 ~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~ 534 (954)
........++.+|.. .....|||+.|||.+|++++... ...+.|..++|||||||+|||++|||+
T Consensus 170 ------------~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~--~~~~~~~~~~GTS~AaP~vaG~aAl~~ 234 (254)
T cd07490 170 ------------FGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA--NGDGQYTRLSGTSMAAPHVAGVAALLA 234 (254)
T ss_pred ------------CcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC--CCCCCeeecccHHHHHHHHHHHHHHHH
Confidence 000011223334433 24568999999999999965321 123789999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhccc
Q 042478 535 SLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 535 q~~P~~sp~~Iks~L~~TA~ 554 (954)
|++|+|++.+||++|++||+
T Consensus 235 ~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 235 AAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999985
No 37
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.7e-37 Score=336.37 Aligned_cols=253 Identities=27% Similarity=0.316 Sum_probs=184.2
Q ss_pred ceEEEEEeCCCCCCCCCcCCCCCCCC-CC---CCCcccccccCC-CCCCCCCCccccceeccccC-CCCCCCchhhhccc
Q 042478 141 GTIIGIIDTGVWPESESFSDKGMGQA-PV---PPHWKGICQKGE-KFNSSNCNRKLIGARWFIKG-IMDMINASTNTDEG 214 (954)
Q Consensus 141 GVvVgVIDTGId~~Hp~f~d~~~~~~-~~---p~~~~g~~~~~~-~f~~~~cn~kiiga~~~~~~-~~~~~G~GTa~v~G 214 (954)
||+|||||||||++||+|.+.....+ -+ +...++.-.... .....+.+.+...-..+... ..+..|||| |++|
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT-~vAg 79 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGT-HVAG 79 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHH-HHHH
Confidence 79999999999999999986542200 00 000111000000 00000111111000000000 111227999 9999
Q ss_pred ccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHh----------cCCccEEEecccCCCCCCCccCccc
Q 042478 215 LAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI----------HDGVDVLSVSIGNEIPLFSYIDQRD 278 (954)
Q Consensus 215 ~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai----------~dgvdVINlSlG~~~~~~~~~~~~d 278 (954)
++++. +.||||+|+|+.+|+++..+.+.+++++|++||+ .++++|||||||... ... .
T Consensus 80 iiaa~~~~~~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~----~~~--~ 153 (285)
T cd07496 80 TIAAVTNNGVGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDG----ACS--A 153 (285)
T ss_pred HHhCcCCCCCCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCC----CCC--H
Confidence 87764 5699999999999999877778899999999998 467899999999875 213 5
Q ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCC-CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeee
Q 042478 279 SIAIGSFHAIAKGITVVSSAGNDGPVA-QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLT 357 (954)
Q Consensus 279 ~~~~a~~~A~~~Gi~VV~AAGN~G~~~-~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~ 357 (954)
.+..++..+.++|++||+||||+|.+. ...+...|++|+|||++.
T Consensus 154 ~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------------------------- 199 (285)
T cd07496 154 TMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL---------------------------------- 199 (285)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC----------------------------------
Confidence 788889999999999999999999775 556677889999997431
Q ss_pred eccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehh
Q 042478 358 YSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE 437 (954)
Q Consensus 358 ~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~ 437 (954)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCC---------C
Q 042478 438 VGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGS---------K 508 (954)
Q Consensus 438 ~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~---------~ 508 (954)
.+.++.||++|+.. ||.|||++|.+....... .
T Consensus 200 ------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~~~ 241 (285)
T cd07496 200 ------------------------------RGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSP 241 (285)
T ss_pred ------------------------------CCCcccccCCCCCC--------CEEeCCCCccccCCCCccccccccccCC
Confidence 13357899999987 999999999988764311 1
Q ss_pred CCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 042478 509 DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTT 552 (954)
Q Consensus 509 ~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~T 552 (954)
....|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 242 ~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 242 GGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 13578999999999999999999999999999999999999876
No 38
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.7e-36 Score=327.08 Aligned_cols=244 Identities=33% Similarity=0.416 Sum_probs=184.6
Q ss_pred CceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCC--CCCCCchhhhcccccc
Q 042478 140 EGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGI--MDMINASTNTDEGLAA 217 (954)
Q Consensus 140 ~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~--~~~~G~GTa~v~G~a~ 217 (954)
+||+|||||||||++||+|.+..+.. .....+.+....+..+ -.+..+..+..... .+..|||| +++|+++
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~HGT-~va~ii~ 74 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVN-PGEIPGNGIDDDGNGY-----VDDIYGWNFVNNDNDPMDDNGHGT-HVAGIIG 74 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccC-cccccccCcccCCCCc-----ccCCCcccccCCCCCCCCCCCcHH-HHHHHHH
Confidence 68999999999999999998754320 0000111111111111 11111111111111 12228999 9999877
Q ss_pred ccc------eeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHC
Q 042478 218 GLA------RGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK 290 (954)
Q Consensus 218 G~~------~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~ 290 (954)
|.. .|+||+|+|+.+|++...+ ++..++++||++|++.+++|||+|||... . . ..+..++.++.++
T Consensus 75 ~~~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~----~-~--~~~~~~~~~~~~~ 147 (259)
T cd07473 75 AVGNNGIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG----P-S--QALRDAIARAIDA 147 (259)
T ss_pred CcCCCCCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC----C-C--HHHHHHHHHHHhC
Confidence 653 8999999999999998776 88899999999999999999999999875 2 2 6778889999999
Q ss_pred CCEEEEeCCCCCCCC---Ccccc--CCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccC
Q 042478 291 GITVVSSAGNDGPVA---QTIVN--TAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFD 365 (954)
Q Consensus 291 Gi~VV~AAGN~G~~~---~t~~~--~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~ 365 (954)
|+++|+||||+|... ..++. ..|++|+||+.+.
T Consensus 148 g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~------------------------------------------ 185 (259)
T cd07473 148 GILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS------------------------------------------ 185 (259)
T ss_pred CCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC------------------------------------------
Confidence 999999999999762 23332 3578888887431
Q ss_pred CCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHH
Q 042478 366 PDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSY 445 (954)
Q Consensus 366 ~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~ 445 (954)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHH
Q 042478 446 IRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPH 525 (954)
Q Consensus 446 ~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~ 525 (954)
.+.++.||++||. +||+.|||.++++..+. +.|..++|||||||+
T Consensus 186 ----------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~------~~~~~~~GTS~AaP~ 230 (259)
T cd07473 186 ----------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPG------GGYGYMSGTSMATPH 230 (259)
T ss_pred ----------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCC------CcEEEeccHhHHHHH
Confidence 1234568999986 36999999999998765 789999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 526 VAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 526 VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
|||++||++|++|.+++++||++|++||+
T Consensus 231 vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 231 VAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999985
No 39
>KOG0886 consensus 40S ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-37 Score=285.73 Aligned_cols=150 Identities=21% Similarity=0.356 Sum_probs=145.8
Q ss_pred ecCCCCCCccccccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEE
Q 042478 793 AMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFI 872 (954)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~ 872 (954)
+|||++ +++|+|||.||++.+++.|+|++||+|++++++++|+.++|+||+|++|+|+++|+ ||+.+++
T Consensus 6 kfdP~e----------iK~vylrc~GgEVgatsaLApKIgPLGLSpKkvGedIaKaT~dwKgl~vtvkLtIq-nR~A~i~ 74 (167)
T KOG0886|consen 6 KFDPNE----------IKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGEDIAKATGDWKGLRVTVKLTIQ-NRQAQIE 74 (167)
T ss_pred CCCccc----------eEEEEEEeecCccccccccccccccccCCccccchHHHHhhcccccceEEEEEEec-CcccceE
Confidence 799999 99999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EeCCCHHHHHHHHhCCCCCCCCCCC--ceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhh
Q 042478 873 LKTPPASVLLLKAAGVEKGSKDPKQ--QKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETK 950 (954)
Q Consensus 873 ~~~p~~s~li~k~~~~~~~~~~~~~--~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~ 950 (954)
| .|++|.||+|+|+++++++|+.+ ++.|+|+|++|.+||+++++.+.+++|++++|+|+|||+|+||+||++.|.++
T Consensus 75 V-vpSasaLiIkaLKEPpRDRKk~knikh~Gni~~deiv~iar~mr~rS~a~~l~gt~keilgt~~svgc~vDgk~Phdi 153 (167)
T KOG0886|consen 75 V-VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVEIARIMRPRSLARELSGTVKEILGTAQSVGCTVDGKHPHDI 153 (167)
T ss_pred E-cccHHHHHHHHhcCCcchhhhhccccccCcccHHHHHHHHHHhhhHhhhhhhhhhHHHHhchhhhcccccCCCChHHH
Confidence 9 99999999999999999999888 56799999999999999999999999999999999999999999999999998
Q ss_pred hccC
Q 042478 951 KKEL 954 (954)
Q Consensus 951 ~~~~ 954 (954)
.++|
T Consensus 154 ~~~i 157 (167)
T KOG0886|consen 154 IDEI 157 (167)
T ss_pred Hhhh
Confidence 8764
No 40
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-36 Score=325.47 Aligned_cols=231 Identities=32% Similarity=0.403 Sum_probs=181.5
Q ss_pred eEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc--
Q 042478 142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL-- 219 (954)
Q Consensus 142 VvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~-- 219 (954)
|+|||||+|||++||+|.+... ....|..... + ....+.+|||| |++|+++|.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~----~~~~~~~~~~----------~----------~~~~~~~~HGT-~vAgiiag~~~ 55 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPK----LVPGWNFVSN----------N----------DPTSDIDGHGT-ACAGVAAAVGN 55 (242)
T ss_pred CEEEEecCCCCCCChhhccCcC----ccCCccccCC----------C----------CCCCCCCCCHH-HHHHHHHhccC
Confidence 6899999999999999986311 1111111000 0 00112237999 999987764
Q ss_pred ----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHH-CCCE
Q 042478 220 ----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIA-KGIT 293 (954)
Q Consensus 220 ----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~-~Gi~ 293 (954)
+.|+||+|+|+.+|+++..+ +...++.++++||++.+++|||||||...... ... ..+..++..+.. +|++
T Consensus 56 ~~~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~-~~~--~~~~~~~~~~~~~~gvl 132 (242)
T cd07498 56 NGLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTE-SIS--SAIDNAATYGRNGKGGV 132 (242)
T ss_pred CCceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc-hHH--HHHHHHHHHHhhcCCeE
Confidence 58999999999999998764 67889999999999999999999999875222 223 667777888888 9999
Q ss_pred EEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccC
Q 042478 294 VVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCR 373 (954)
Q Consensus 294 VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~ 373 (954)
+|+||||+|......++..|++|+|||.+.+
T Consensus 133 iv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------------------------------- 163 (242)
T cd07498 133 VLFAAGNSGRSVSSGYAANPSVIAVAATDSN------------------------------------------------- 163 (242)
T ss_pred EEEecCCCCCccCCCCcCCCCeEEEEEeCCC-------------------------------------------------
Confidence 9999999998876677889999999985421
Q ss_pred CCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCc
Q 042478 374 QGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPI 453 (954)
Q Consensus 374 ~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~ 453 (954)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCC---CCCCCceEeecCCCchhHHHHHHH
Q 042478 454 AKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG---SKDIQGYALLSGTSMSCPHVAGIA 530 (954)
Q Consensus 454 ~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~---~~~~~~y~~~SGTSMAaP~VAG~a 530 (954)
+.++.||+|||.. |++|||.+++....... ....+.|..++|||||||+|||++
T Consensus 164 ---------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~ 220 (242)
T cd07498 164 ---------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGVA 220 (242)
T ss_pred ---------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHHHHHHHH
Confidence 2357899999987 99999999998843310 011367999999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHhc
Q 042478 531 ALIKSLHRDWSPAAIRSALVTT 552 (954)
Q Consensus 531 ALl~q~~P~~sp~~Iks~L~~T 552 (954)
|||+|++|+|++++||++|+.|
T Consensus 221 All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 221 ALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999975
No 41
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-36 Score=330.40 Aligned_cols=239 Identities=22% Similarity=0.178 Sum_probs=173.4
Q ss_pred ccccccCCC-CCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCc
Q 042478 129 SKNLSTESN-MGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA 207 (954)
Q Consensus 129 ~~~~w~~~~-~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~ 207 (954)
+..+|+... .|+||+|+|||+|||.+||+|.++... . +. .+. ..+.+||
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--~----~~-------~~~-----------------~~d~~gH 53 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--L----IS-------GLT-----------------DQADSDH 53 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--c----cC-------CCC-----------------CCCCCCC
Confidence 567898754 599999999999999999999865332 0 00 000 1122379
Q ss_pred hhhhcccccccc-----ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc----CCccEEEecccCCCCCCCcc---C
Q 042478 208 STNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH----DGVDVLSVSIGNEIPLFSYI---D 275 (954)
Q Consensus 208 GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~----dgvdVINlSlG~~~~~~~~~---~ 275 (954)
|| |++|++++. +.||||+|+|+.+|++. .++++++|.||++ .++.+||||||...... .. +
T Consensus 54 GT-~VAGiIaa~~n~~G~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~-~~~p~~ 126 (277)
T cd04843 54 GT-AVLGIIVAKDNGIGVTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTGGPNNGY-PPLPVE 126 (277)
T ss_pred cc-hhheeeeeecCCCceeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCc-ccCcch
Confidence 99 999987763 58999999999999985 3456677777776 45778999999864111 11 1
Q ss_pred cccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccc-------------cCCCceEEEcccccCCCccceeecCCCeEEeee
Q 042478 276 QRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV-------------NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQ 342 (954)
Q Consensus 276 ~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~-------------~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~ 342 (954)
....+..++.+|.++|+++|+||||++.+..... ...|++|+|||++.+.
T Consensus 127 ~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~----------------- 189 (277)
T cd04843 127 YEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT----------------- 189 (277)
T ss_pred hhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC-----------------
Confidence 1134556788888999999999999986521111 1234677777643110
Q ss_pred eeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC
Q 042478 343 SIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG 422 (954)
Q Consensus 343 s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~ 422 (954)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecC
Q 042478 423 LDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAY 502 (954)
Q Consensus 423 ~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~ 502 (954)
...++.||++|+.. ||.|||++|++++
T Consensus 190 ---------------------------------------------~~~~~~fSn~G~~v--------di~APG~~i~s~~ 216 (277)
T cd04843 190 ---------------------------------------------GHTRLAFSNYGSRV--------DVYGWGENVTTTG 216 (277)
T ss_pred ---------------------------------------------CCccccccCCCCcc--------ceEcCCCCeEecC
Confidence 11268899999987 9999999999998
Q ss_pred CCCCC----CCCCceEeecCCCchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 042478 503 PPIGS----KDIQGYALLSGTSMSCPHVAGIAALIKS----L-HRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 503 ~~~~~----~~~~~y~~~SGTSMAaP~VAG~aALl~q----~-~P~~sp~~Iks~L~~TA~ 554 (954)
+.... ...+.|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 217 YGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 76321 1123457899999999999999999975 3 499999999999999974
No 42
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=9e-36 Score=317.85 Aligned_cols=221 Identities=37% Similarity=0.510 Sum_probs=180.6
Q ss_pred ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc-
Q 042478 141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL- 219 (954)
Q Consensus 141 GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~- 219 (954)
||+|||||+||+++||+|.+.... .| .|. .+.. ....+..|||| +++|++++.
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~~------~~--------~~~---~~~~--------~~~~~~~~HGT-~vA~ii~~~~ 54 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIVG------GA--------NFT---GDDN--------NDYQDGNGHGT-HVAGIIAALD 54 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccccC------cc--------ccc---CCCC--------CCCCCCCCCHH-HHHHHHhccc
Confidence 799999999999999999754222 11 110 0000 11122237999 999987763
Q ss_pred ----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEE
Q 042478 220 ----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITV 294 (954)
Q Consensus 220 ----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~V 294 (954)
..|+||+|+|+.+|+++..+ +...+++++++||++.|++|||+|||... .. ..+..++..+.++|+++
T Consensus 55 ~~~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~-----~~--~~~~~~~~~a~~~gili 127 (229)
T cd07477 55 NGVGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS-----DS--PALREAIKKAYAAGILV 127 (229)
T ss_pred CCCccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC-----CC--HHHHHHHHHHHHCCCEE
Confidence 68999999999999998776 66789999999999999999999999864 12 45677888899999999
Q ss_pred EEeCCCCCCCCCcc--ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCcc
Q 042478 295 VSSAGNDGPVAQTI--VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDC 372 (954)
Q Consensus 295 V~AAGN~G~~~~t~--~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C 372 (954)
|+||||+|...... ++..|++|+||+++.+
T Consensus 128 v~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------------------------ 159 (229)
T cd07477 128 VAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------------------------ 159 (229)
T ss_pred EEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------------------------------
Confidence 99999999776654 7788999999985422
Q ss_pred CCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCC
Q 042478 373 RQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSP 452 (954)
Q Consensus 373 ~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~ 452 (954)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHH
Q 042478 453 IAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAAL 532 (954)
Q Consensus 453 ~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aAL 532 (954)
+.++.||++|+.. |+.|||.+|+++++. +.|..++|||||||+|||++||
T Consensus 160 ----------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~------~~~~~~~GTS~Aap~vag~~Al 209 (229)
T cd07477 160 ----------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN------NDYAYLSGTSMATPHVAGVAAL 209 (229)
T ss_pred ----------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC------CCEEEEccHHHHHHHHHHHHHH
Confidence 2345789999976 999999999999886 6899999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhc
Q 042478 533 IKSLHRDWSPAAIRSALVTT 552 (954)
Q Consensus 533 l~q~~P~~sp~~Iks~L~~T 552 (954)
|+|++|+++|.+||++|++|
T Consensus 210 l~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 210 VWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999976
No 43
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.6e-36 Score=330.65 Aligned_cols=262 Identities=28% Similarity=0.344 Sum_probs=179.1
Q ss_pred cCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcc
Q 042478 134 TESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDE 213 (954)
Q Consensus 134 ~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~ 213 (954)
..+++|+||+|||||||||++||+|.+..+. ..+|... ....+.+|||| |++
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~--------------~~~~~~~-------------~~~~d~~gHGT-~VA 53 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDIT--------------TKSFVGG-------------EDVQDGHGHGT-HCA 53 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCccc--------------CcccCCC-------------CCCCCCCCcHH-HHH
Confidence 3578999999999999999999999765332 0111100 00112237999 999
Q ss_pred cccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCC----CCccCc---ccHH
Q 042478 214 GLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPL----FSYIDQ---RDSI 280 (954)
Q Consensus 214 G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~----~~~~~~---~d~~ 280 (954)
|+++|. ..||||+|+|+.+|++...+ +...++++||+||++.|++|||+|||...+. + |... ...+
T Consensus 54 giiag~~~~~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~-~~~~~~~~~~~ 132 (297)
T cd07480 54 GTIFGRDVPGPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQG-WPPGLAFSRAL 132 (297)
T ss_pred HHHhcccCCCcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCccccccc-CCCCchhHHHH
Confidence 987764 46999999999999997654 7777899999999999999999999985410 0 1110 0123
Q ss_pred HHHHHHH---------------HHCCCEEEEeCCCCCCCCCccc-----cCCCceEEEcccccCCCccceeecCCCeEEe
Q 042478 281 AIGSFHA---------------IAKGITVVSSAGNDGPVAQTIV-----NTAPWIITVGATTIDRAFPTAITLGNHQVLW 340 (954)
Q Consensus 281 ~~a~~~A---------------~~~Gi~VV~AAGN~G~~~~t~~-----~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~ 340 (954)
......+ .++|++||+||||+|....... ...+++++|++....
T Consensus 133 ~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~---------------- 196 (297)
T cd07480 133 EAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL---------------- 196 (297)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC----------------
Confidence 3233333 6799999999999986533221 112233333332110
Q ss_pred eeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCC
Q 042478 341 GQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT 420 (954)
Q Consensus 341 g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~ 420 (954)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEe
Q 042478 421 DGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILS 500 (954)
Q Consensus 421 ~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~s 500 (954)
+....|+++.+. ...+|||+|||++|++
T Consensus 197 ------------------------------------------------~~~~~~~~~~~~----~~~~~dv~ApG~~i~s 224 (297)
T cd07480 197 ------------------------------------------------GRTGNFSAVANF----SNGEVDIAAPGVDIVS 224 (297)
T ss_pred ------------------------------------------------CCCCCccccCCC----CCCceEEEeCCCCeEe
Confidence 111122222221 2347799999999999
Q ss_pred cCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCC
Q 042478 501 AYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG 580 (954)
Q Consensus 501 a~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~Ga 580 (954)
+++. +.|..++|||||||+|||++|||+|++|.+++.+++.+|+.......... ........++|+
T Consensus 225 ~~~~------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~~~~~g~ 290 (297)
T cd07480 225 AAPG------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ--------FAPGLDLPDRGV 290 (297)
T ss_pred ecCC------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC--------CCCCCChhhcCC
Confidence 9886 78999999999999999999999999999999888887774322110000 123455678999
Q ss_pred CccCcc
Q 042478 581 GHVNPN 586 (954)
Q Consensus 581 G~vn~~ 586 (954)
|++++.
T Consensus 291 G~~~~~ 296 (297)
T cd07480 291 GLGLAP 296 (297)
T ss_pred ceeecC
Confidence 999875
No 44
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.7e-36 Score=322.90 Aligned_cols=218 Identities=21% Similarity=0.206 Sum_probs=163.6
Q ss_pred CCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccc
Q 042478 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAG 218 (954)
Q Consensus 139 G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G 218 (954)
+++|+|||||||||++||+|.++... ...|... .+. . + + ....+.+.+|||| |++|+.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~----~~~~~~~--~~~-~-----~-~------~~~~~~d~~gHGT-~vAgiI-- 59 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIG----GKSFSPY--EGD-G-----N-K------VSPYYVSADGHGT-AMARMI-- 59 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccccc----CCCCCCC--CCC-c-----c-c------CCCCCCCCCCcHH-HHHHHH--
Confidence 78999999999999999999864222 0011100 000 0 0 0 0001122338999 999975
Q ss_pred cceeccCCCcEEEEEEecCCC-------CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCC
Q 042478 219 LARGGAPLAHLAIYKACWDIG-------CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKG 291 (954)
Q Consensus 219 ~~~GvAP~A~L~~yKv~~~~g-------~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~G 291 (954)
.|+||+|+|+.+|+++..+ ++..++++||+||+++|+||||||||...+.. .......+..++.+|.++|
T Consensus 60 --~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~-~~~~~~~l~~ai~~A~~~G 136 (247)
T cd07491 60 --CRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPED-NDNDINELENAIKEALDRG 136 (247)
T ss_pred --HHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccc-cccchHHHHHHHHHHHhCC
Confidence 5899999999999997653 45678999999999999999999999875210 0011267888999999999
Q ss_pred CEEEEeCCCCCCCCC-cc--ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCC
Q 042478 292 ITVVSSAGNDGPVAQ-TI--VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDS 368 (954)
Q Consensus 292 i~VV~AAGN~G~~~~-t~--~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~ 368 (954)
++||+||||+|.... ++ +...|++|+|||++.+
T Consensus 137 ilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~-------------------------------------------- 172 (247)
T cd07491 137 ILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED-------------------------------------------- 172 (247)
T ss_pred eEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC--------------------------------------------
Confidence 999999999997754 33 3567899999985422
Q ss_pred CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhh
Q 042478 369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRR 448 (954)
Q Consensus 369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s 448 (954)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHH
Q 042478 449 ARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAG 528 (954)
Q Consensus 449 ~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG 528 (954)
+.++.||++|+.. |++|||++|+++++.. ..+.|..++|||||||||||
T Consensus 173 --------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~---~~~~~~~~sGTS~Atp~vaG 221 (247)
T cd07491 173 --------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP---LSNSFVTHTGSSVATALAAG 221 (247)
T ss_pred --------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC---CCCCeeeeccHHHHHHHHHH
Confidence 2356789999987 9999999999997621 12689999999999999999
Q ss_pred HHHHHHhh
Q 042478 529 IAALIKSL 536 (954)
Q Consensus 529 ~aALl~q~ 536 (954)
++||+++.
T Consensus 222 vaAL~l~~ 229 (247)
T cd07491 222 LAALILYC 229 (247)
T ss_pred HHHHHHHH
Confidence 99999985
No 45
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2.5e-36 Score=331.98 Aligned_cols=263 Identities=37% Similarity=0.494 Sum_probs=197.9
Q ss_pred EEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC------CCCCCCchhhhccccc
Q 042478 143 IIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG------IMDMINASTNTDEGLA 216 (954)
Q Consensus 143 vVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~------~~~~~G~GTa~v~G~a 216 (954)
+|||||||||++||+|....+. ..++.+.+.|.++ ..+.+|||| +++|++
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~HGT-~va~ii 56 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFI-----------------------WSKVPGGYNFVDGNPNPSPSDDDNGHGT-HVAGII 56 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEE-----------------------EEEEEEEEETTTTBSTTTSSSTSSSHHH-HHHHHH
T ss_pred CEEEEcCCcCCCChhHccCCcc-----------------------cccccceeeccCCCCCcCccccCCCccc-hhhhhc
Confidence 6999999999999999722111 0111122222221 112227999 999987
Q ss_pred cccc-------eeccCCCcEEEEEEecCCCCChHHHHHHHHHHh-cCCccEEEecccCC--CCCCCccCcccHHHHHHHH
Q 042478 217 AGLA-------RGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI-HDGVDVLSVSIGNE--IPLFSYIDQRDSIAIGSFH 286 (954)
Q Consensus 217 ~G~~-------~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai-~dgvdVINlSlG~~--~~~~~~~~~~d~~~~a~~~ 286 (954)
.+.. .|+||+|+|+.+|++...++...+++++|++++ +++++|||+|||.. .... ... +.+..++..
T Consensus 57 ~~~~~~~~~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~-~~~--~~~~~~~~~ 133 (282)
T PF00082_consen 57 AGNGGNNGPGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDP-SYS--DILEEAIDY 133 (282)
T ss_dssp HHTTSSSSSSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHS-HHH--HHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccc-ccc--ccccccccc
Confidence 7765 999999999999998777777888999999999 89999999999883 2111 122 445667778
Q ss_pred HHHCCCEEEEeCCCCCCCCCc---cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccc
Q 042478 287 AIAKGITVVSSAGNDGPVAQT---IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIA 363 (954)
Q Consensus 287 A~~~Gi~VV~AAGN~G~~~~t---~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~ 363 (954)
+.++|+++|+||||+|+.... .+...+++|+||+.+.+
T Consensus 134 ~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~--------------------------------------- 174 (282)
T PF00082_consen 134 AEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN--------------------------------------- 174 (282)
T ss_dssp HHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT---------------------------------------
T ss_pred ccccCcceeeccccccccccccccccccccccccccccccc---------------------------------------
Confidence 889999999999999876543 44556888999874311
Q ss_pred cCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHH
Q 042478 364 FDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQIL 443 (954)
Q Consensus 364 ~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~ 443 (954)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchh
Q 042478 444 SYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSC 523 (954)
Q Consensus 444 ~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAa 523 (954)
+.++.||++|+.. .++++||||+|||.+|+++++.... ..|..++||||||
T Consensus 175 -------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~~---~~~~~~~GTS~Aa 225 (282)
T PF00082_consen 175 -------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSDR---GSYTSFSGTSFAA 225 (282)
T ss_dssp -------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTES---EEEEEEESHHHHH
T ss_pred -------------------------ccccccccccccc-ccccccccccccccccccccccccc---ccccccCcCCchH
Confidence 2357889997653 2789999999999999998876210 3588899999999
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 524 PHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 524 P~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
|+|||++|||+|++|+|++.+||.+|++||...+.. ........||+|+||+.+|++
T Consensus 226 p~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~----------~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 226 PVVAGAAALLLSKYPNLTPAEIKALLINTADDLGST----------NGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSET----------TSSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcC----------CCCCCCCCccCChhCHHHHhC
Confidence 999999999999999999999999999999976511 123445678999999999874
No 46
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.5e-35 Score=309.61 Aligned_cols=220 Identities=22% Similarity=0.215 Sum_probs=170.7
Q ss_pred ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCC-CCCCCccccceeccccCCCCCCCchhhhcccccccc
Q 042478 141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFN-SSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL 219 (954)
Q Consensus 141 GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~-~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~ 219 (954)
||+|||||||||++||+|.+.... ++ .+. ...|+ -.....+.+|||| |++|+.+
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-------~~-------~~~~~~~~~--------~~~~~~d~~gHGT-~vAgiia-- 55 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-------GE-------VTIDLEIIV--------VSAEGGDKDGHGT-ACAGIIK-- 55 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-------cc-------ccccccccc--------CCCCCCCCCCcHH-HHHHHHH--
Confidence 799999999999999999765322 00 000 00000 0011112238999 9999864
Q ss_pred ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeC
Q 042478 220 ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298 (954)
Q Consensus 220 ~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AA 298 (954)
+.+|+++|+.+|+++..+ +..+++++||+||+++|++|||||||... . ... ..+..++.++.++|+++|+||
T Consensus 56 --~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~-~~~--~~~~~~~~~a~~~g~l~V~aa 128 (222)
T cd07492 56 --KYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--D-RDF--PLLKELLEYAYKAGGIIVAAA 128 (222)
T ss_pred --ccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--C-CcC--HHHHHHHHHHHHCCCEEEEEC
Confidence 567999999999998776 88889999999999999999999999875 1 222 567788889999999999999
Q ss_pred CCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCC
Q 042478 299 GNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLN 378 (954)
Q Consensus 299 GN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~ 378 (954)
||++.... .++..|.+|+|++...++
T Consensus 129 gN~~~~~~-~Pa~~~~vi~V~~~~~~~----------------------------------------------------- 154 (222)
T cd07492 129 PNNNDIGT-PPASFPNVIGVKSDTADD----------------------------------------------------- 154 (222)
T ss_pred CCCCCCCC-CCccCCceEEEEecCCCC-----------------------------------------------------
Confidence 99986543 366778899998743111
Q ss_pred cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCC
Q 042478 379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSS 458 (954)
Q Consensus 379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~ 458 (954)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCC
Q 042478 459 PETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHR 538 (954)
Q Consensus 459 ~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P 538 (954)
. .+.+++ ++|+.|||.+|+++++. +.|..++|||||||+|||++|||+|++|
T Consensus 155 -----------~---~~~~~~--------~~~~~apg~~i~~~~~~------~~~~~~~GTS~Aap~vaG~~All~~~~p 206 (222)
T cd07492 155 -----------P---KSFWYI--------YVEFSADGVDIIAPAPH------GRYLTVSGNSFAAPHVTGMVALLLSEKP 206 (222)
T ss_pred -----------C---cccccC--------CceEEeCCCCeEeecCC------CCEEEeccHHHHHHHHHHHHHHHHHhCC
Confidence 0 011233 34999999999999886 6899999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccc
Q 042478 539 DWSPAAIRSALVTTAS 554 (954)
Q Consensus 539 ~~sp~~Iks~L~~TA~ 554 (954)
+|+++|||++|++||+
T Consensus 207 ~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 207 DIDANDLKRLLQRLAV 222 (222)
T ss_pred CCCHHHHHHHHHHhcC
Confidence 9999999999999985
No 47
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.8e-34 Score=319.54 Aligned_cols=151 Identities=25% Similarity=0.337 Sum_probs=101.7
Q ss_pred ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCC-CCCCccccceeccccCCCCCCCchhhhccccccc-
Q 042478 141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNS-SNCNRKLIGARWFIKGIMDMINASTNTDEGLAAG- 218 (954)
Q Consensus 141 GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~-~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G- 218 (954)
.|+|||||||||++||+|.+.... .-..+ .....+.. ..|. .|. .++..+..|||| |++|++++
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~---~~~~~----~~~~~~~~~~~~~---~~~---~~~~~d~~gHGT-~vAgiia~~ 66 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS---YSKNL----VPKGGYDGKEAGE---TGD---INDIVDKLGHGT-AVAGQIAAN 66 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc---ccccc----ccCCCcCCccccc---cCC---CCcCCCCCCcHh-HHHHHHhcC
Confidence 389999999999999999854221 00000 00000000 0000 000 011112238999 99998765
Q ss_pred -cceeccCCCcEEEEEEecCCCC-ChHHHHHHHHHHhcCCccEEEecccCCCCCCC-c---cCcccHHHHHHHHHHHCCC
Q 042478 219 -LARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVSIGNEIPLFS-Y---IDQRDSIAIGSFHAIAKGI 292 (954)
Q Consensus 219 -~~~GvAP~A~L~~yKv~~~~g~-~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~-~---~~~~d~~~~a~~~A~~~Gi 292 (954)
...||||+|+|+.+|+++..+. ...++++||+||+++|++|||+|||....... . ....+.+..++..+.++|+
T Consensus 67 ~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~ 146 (294)
T cd07482 67 GNIKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGS 146 (294)
T ss_pred CCCceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCC
Confidence 3579999999999999987764 88899999999999999999999998642110 0 0001346667778889999
Q ss_pred EEEEeCCCCCCCC
Q 042478 293 TVVSSAGNDGPVA 305 (954)
Q Consensus 293 ~VV~AAGN~G~~~ 305 (954)
+||+||||+|...
T Consensus 147 lvv~AAGN~g~~~ 159 (294)
T cd07482 147 IVVAAAGNDGLDV 159 (294)
T ss_pred EEEEeCCCCCccc
Confidence 9999999999643
No 48
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=2.2e-34 Score=319.50 Aligned_cols=248 Identities=21% Similarity=0.150 Sum_probs=179.2
Q ss_pred CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCc
Q 042478 128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA 207 (954)
Q Consensus 128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~ 207 (954)
++..+|..+++|+||+|||||||||+.||+|.+.... ...|+-...... .+ ....+.+||
T Consensus 27 ~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~----~~~~~~~~~~~~---------------~~-~~~~~~~gH 86 (297)
T cd04059 27 NVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP----EASYDFNDNDPD---------------PT-PRYDDDNSH 86 (297)
T ss_pred ccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc----cccccccCCCCC---------------CC-Ccccccccc
Confidence 4778999999999999999999999999999765321 011111000000 00 000122389
Q ss_pred hhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCCccC-cccHH
Q 042478 208 STNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYID-QRDSI 280 (954)
Q Consensus 208 GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~-~~d~~ 280 (954)
|| |++|+++|. ..||||+|+|+.+|++... .....+..++.++.+ .++|||+|||...... +.+ .....
T Consensus 87 GT-~vAgiiag~~~~~~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~-~~~~~~~~~ 162 (297)
T cd04059 87 GT-RCAGEIAAVGNNGICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGK-TVDGPGPLA 162 (297)
T ss_pred Cc-ceeeEEEeecCCCcccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCCCCCC-ccCCCcHHH
Confidence 99 999988764 5899999999999999754 344555666666654 4599999999864211 111 11344
Q ss_pred HHHHHHHHH-----CCCEEEEeCCCCCCCCCc----cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCC
Q 042478 281 AIGSFHAIA-----KGITVVSSAGNDGPVAQT----IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSH 351 (954)
Q Consensus 281 ~~a~~~A~~-----~Gi~VV~AAGN~G~~~~t----~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~ 351 (954)
..++.++.. +|++||+||||+|..... .....|++|+|||++.
T Consensus 163 ~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~---------------------------- 214 (297)
T cd04059 163 QRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA---------------------------- 214 (297)
T ss_pred HHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC----------------------------
Confidence 556666664 699999999999973222 1245678999987532
Q ss_pred ceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccce
Q 042478 352 GFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPC 431 (954)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~ 431 (954)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCc-------eEecCCC
Q 042478 432 IKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVD-------ILSAYPP 504 (954)
Q Consensus 432 ~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~-------I~sa~~~ 504 (954)
.+.++.||++|+.. ++.|||.. |+++...
T Consensus 215 ------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~ 250 (297)
T cd04059 215 ------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLG 250 (297)
T ss_pred ------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCC
Confidence 13457899999987 89999987 7776654
Q ss_pred CCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 505 IGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 505 ~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
. ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 251 ~---~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 251 G---NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred C---CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 1 0156789999999999999999999999999999999999999985
No 49
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=4.3e-34 Score=311.25 Aligned_cols=240 Identities=28% Similarity=0.317 Sum_probs=181.0
Q ss_pred CCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccc
Q 042478 138 MGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAA 217 (954)
Q Consensus 138 ~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~ 217 (954)
+|+||+|||||+||+++||+|.+.... . +..... ++. ......+.+|||| +++|+++
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--~----~~~~~~---------~~~-------~~~~~~~~~~HGT-~vagiia 57 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--A----SYYVAV---------NDA-------GYASNGDGDSHGT-HVAGVIA 57 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccc--c----cccccc---------ccc-------cCCCCCCCCChHH-HHHHHHh
Confidence 699999999999999999999865432 0 000000 000 0011122237999 9999888
Q ss_pred cc-----ceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCcc---------CcccHHH
Q 042478 218 GL-----ARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYI---------DQRDSIA 281 (954)
Q Consensus 218 G~-----~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~---------~~~d~~~ 281 (954)
|. ..|+||+|+|+.+|+++..+ +....+.++++++++.+++|||+|||...... .. .....+.
T Consensus 58 g~~~~~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~-~~~~~~~~~~~~~~~~~~ 136 (267)
T cd04848 58 AARDGGGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAID-TVSTTYKGSAATQGNTLL 136 (267)
T ss_pred cCcCCCCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCccc-ccccchhhhccccchHHH
Confidence 76 67999999999999998764 66778899999999999999999999875211 10 1125677
Q ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCcc---------ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCc
Q 042478 282 IGSFHAIAKGITVVSSAGNDGPVAQTI---------VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHG 352 (954)
Q Consensus 282 ~a~~~A~~~Gi~VV~AAGN~G~~~~t~---------~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~ 352 (954)
..+..+.++|+++|+||||+|...... +...+++|+||+.+.+.
T Consensus 137 ~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~--------------------------- 189 (267)
T cd04848 137 AALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG--------------------------- 189 (267)
T ss_pred HHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC---------------------------
Confidence 778888999999999999998654332 23457888888754321
Q ss_pred eeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceE
Q 042478 353 FTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCI 432 (954)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~ 432 (954)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccc--cCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCC
Q 042478 433 KVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVAS--FSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDI 510 (954)
Q Consensus 433 ~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~--FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 510 (954)
.... ||++|+.. -.+++.|||.+|+++.+.. .
T Consensus 190 -------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~----~ 223 (267)
T cd04848 190 -------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG----G 223 (267)
T ss_pred -------------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCC----C
Confidence 1122 47887653 2347999999999998731 1
Q ss_pred CceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 511 QGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 511 ~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 224 ~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 224 NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 67899999999999999999999999999999999999999985
No 50
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-33 Score=307.24 Aligned_cols=353 Identities=26% Similarity=0.345 Sum_probs=263.7
Q ss_pred CceEEEEEcCCCCCCchhchhhHHHHHHHHhCcccc------ccccEEEEEccceeEEEEEcC-----HHHHHHHHcCCC
Q 042478 32 SNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEA------AKHSILYSYKHGFSGFAARLT-----KTQAEKIAELPG 100 (954)
Q Consensus 32 ~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~------~~~~i~~~y~~~~nGfs~~l~-----~~~~~~L~~~p~ 100 (954)
+..|||+|+.-. ....|+..+++.+....- .+...-..|-..|.-+-++=. .-+++.|+.+|.
T Consensus 49 e~EyIv~F~~y~------~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~ 122 (1033)
T KOG4266|consen 49 ESEYIVRFKQYK------PAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPD 122 (1033)
T ss_pred cceeEEEecccc------cchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCC
Confidence 456999999752 235678888887753221 112223345555554444433 235789999999
Q ss_pred eeEEEeCceeeccc------------cc---------------------ccccc-cccccc-----CccccccCCCCCCc
Q 042478 101 VVQVIPNGILKLHT------------TR---------------------SWEFM-GLHYYQ-----SSKNLSTESNMGEG 141 (954)
Q Consensus 101 V~~V~~~~~~~l~t------------~~---------------------s~~~~-gl~~~~-----~~~~~w~~~~~G~G 141 (954)
|+.|.|-+.+..-. ++ .|+-. -....+ +++.+|..|++|++
T Consensus 123 vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~ 202 (1033)
T KOG4266|consen 123 VKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAK 202 (1033)
T ss_pred ceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCc
Confidence 99999987764210 00 00000 000000 57889999999999
Q ss_pred eEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCC-Cchhhhcccccccc-
Q 042478 142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMI-NASTNTDEGLAAGL- 219 (954)
Q Consensus 142 VvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~-G~GTa~v~G~a~G~- 219 (954)
|+|||.|||+.-+||-|+.-- ....|.... ..++. |||| -|+|..+|.
T Consensus 203 VkvAiFDTGl~~~HPHFrnvK-----ERTNWTNE~------------------------tLdD~lgHGT-FVAGvia~~~ 252 (1033)
T KOG4266|consen 203 VKVAIFDTGLRADHPHFRNVK-----ERTNWTNED------------------------TLDDNLGHGT-FVAGVIAGRN 252 (1033)
T ss_pred eEEEEeecccccCCccccchh-----hhcCCcCcc------------------------ccccCcccce-eEeeeeccch
Confidence 999999999999999997321 112332111 11111 7999 999988875
Q ss_pred -ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEe
Q 042478 220 -ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSS 297 (954)
Q Consensus 220 -~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~A 297 (954)
..|.||+++|+++|||-+.- .+++..++||+|||...+||+|+|+|++. |-+ .|+-.-+.....+.|++|.|
T Consensus 253 ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD----fmD--~PFVeKVwEltAnNvIMvSA 326 (1033)
T KOG4266|consen 253 ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD----FMD--LPFVEKVWELTANNVIMVSA 326 (1033)
T ss_pred hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCcc----ccc--chHHHHHHhhccCcEEEEEe
Confidence 78999999999999997765 78899999999999999999999999986 888 89888888899999999999
Q ss_pred CCCCCCCCCccccCCC--ceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCC
Q 042478 298 AGNDGPVAQTIVNTAP--WIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQG 375 (954)
Q Consensus 298 AGN~G~~~~t~~~~ap--~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~ 375 (954)
+||+||-.+|..|++. .||.||.
T Consensus 327 iGNDGPLYGTLNNPaDQsDViGVGG------------------------------------------------------- 351 (1033)
T KOG4266|consen 327 IGNDGPLYGTLNNPADQSDVIGVGG------------------------------------------------------- 351 (1033)
T ss_pred cCCCCcceeecCCcccccceeeecc-------------------------------------------------------
Confidence 9999999988887652 3444442
Q ss_pred CCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccc
Q 042478 376 SLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAK 455 (954)
Q Consensus 376 ~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~ 455 (954)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceeecccCCCcccccCCCCCCCC----CCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHH
Q 042478 456 LSSPETVIGDLVSPRVASFSSRGPNSM----SPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531 (954)
Q Consensus 456 i~~~~~~~~~~~~~~~a~FSS~GP~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aA 531 (954)
.+-.+.+|.|||||=+.. .-+++||||++-|.+|...-.. .+...+||||.|+|.|||+++
T Consensus 352 ---------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~------~GCr~LSGTSVaSPVVAGav~ 416 (1033)
T KOG4266|consen 352 ---------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS------TGCRSLSGTSVASPVVAGAVC 416 (1033)
T ss_pred ---------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc------ccchhccCCcccchhhhceee
Confidence 223467899999997643 3578999999999999887665 678999999999999999999
Q ss_pred HHHh----hCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 532 LIKS----LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 532 Ll~q----~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
||-+ +.--++|+.+|.+|...|..+... .-|+||+|++|..++.+
T Consensus 417 LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~--------------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 417 LLVSVEAQKKDLLNPASMKQALIEGAAKLPGP--------------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eEeeeheehhhccCHHHHHHHHHhHHhhCCCC--------------chhhccCcchhHHHHHH
Confidence 9977 233468999999999999977432 24789999999988876
No 51
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-30 Score=297.57 Aligned_cols=230 Identities=31% Similarity=0.399 Sum_probs=174.9
Q ss_pred chhhhcccccccc------ceeccCCCcEEEEEEecCC-C--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcc
Q 042478 207 ASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDI-G--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQR 277 (954)
Q Consensus 207 ~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~-g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~ 277 (954)
||| ||+||++|. ..|+||+|+|+..++.+.. | -+...+.+|+..+++..+||||||+|-.. + |.+..
T Consensus 312 HGT-HVAgIa~anhpe~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a--~-~pn~G 387 (1304)
T KOG1114|consen 312 HGT-HVAGIAAANHPETPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA--H-LPNSG 387 (1304)
T ss_pred Ccc-eehhhhccCCCCCccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC--C-CCCcc
Confidence 999 999999986 5899999999999998654 3 45567899999999999999999999876 4 44433
Q ss_pred cHHHHHHHHHHHCCCEEEEeCCCCCCCCCcccc---CCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCcee
Q 042478 278 DSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN---TAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT 354 (954)
Q Consensus 278 d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~---~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~ 354 (954)
..++.+-..+-++||++|+||||+||...|++. ..-.+|.|||.-...- ....|
T Consensus 388 RviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~m-----------------------m~a~y 444 (1304)
T KOG1114|consen 388 RVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGM-----------------------MQAEY 444 (1304)
T ss_pred hHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHH-----------------------HHhhh
Confidence 445544444448999999999999998777764 2346777776211000 00000
Q ss_pred eeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEe
Q 042478 355 GLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKV 434 (954)
Q Consensus 355 ~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i 434 (954)
.+.
T Consensus 445 ~~~----------------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 445 SVR----------------------------------------------------------------------------- 447 (1304)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred ehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceE
Q 042478 435 NYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYA 514 (954)
Q Consensus 435 ~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~ 514 (954)
.........+|||||+. ||.+--.|.|||+.|.+. |.+. -..-.
T Consensus 448 ------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t---lq~~q 491 (1304)
T KOG1114|consen 448 ------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT---LQNSQ 491 (1304)
T ss_pred ------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhh---hhhhh
Confidence 01124478899999998 899999999999988764 2211 14567
Q ss_pred eecCCCchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 515 LLSGTSMSCPHVAGIAALIKS----LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 515 ~~SGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
.|+|||||+|+++|.+|||++ .+-.|||..||.+|++||++++. -.+|.+|.|++++.+|.+
T Consensus 492 LMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~--------------id~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 492 LMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD--------------IDSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred hhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc--------------cchhccCcceeehhHHHH
Confidence 899999999999999999865 56789999999999999997642 247899999999999876
No 52
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.96 E-value=1.9e-27 Score=253.29 Aligned_cols=229 Identities=35% Similarity=0.403 Sum_probs=171.8
Q ss_pred eEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhccccccccc-
Q 042478 142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGLA- 220 (954)
Q Consensus 142 VvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~~- 220 (954)
|+|||||+||+++|++|...... ....++ +.. +.... ....+..|||| +++|++.+..
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~---~~~~~~--------~~~--~~~~~-------~~~~~~~~HGt-~va~~i~~~~~ 59 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGG---GDGGND--------DDD--NENGP-------TDPDDGNGHGT-HVAGIIAASAN 59 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccC---cccccc--------ccc--CcCCC-------CCCCCCCCcHH-HHHHHHhcCCC
Confidence 68999999999999987211000 000000 000 00000 11112227999 8999888775
Q ss_pred ----eeccCCCcEEEEEEecCCC-CChHHHHHHHHHHh-cCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHC-CCE
Q 042478 221 ----RGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAI-HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK-GIT 293 (954)
Q Consensus 221 ----~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai-~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~-Gi~ 293 (954)
.|+||+++|+.+|+....+ .....+++|+++++ +.+++|||+|||... . ... ..+...+..+.++ |++
T Consensus 60 ~~~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~--~-~~~--~~~~~~~~~~~~~~~~i 134 (241)
T cd00306 60 NGGGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPG--S-PPS--SALSEAIDYALAKLGVL 134 (241)
T ss_pred CCCCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCC--C-CCC--HHHHHHHHHHHHhcCeE
Confidence 8999999999999997765 67788999999999 999999999999975 1 112 5677788888888 999
Q ss_pred EEEeCCCCCCCCC---ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCC
Q 042478 294 VVSSAGNDGPVAQ---TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSAN 370 (954)
Q Consensus 294 VV~AAGN~G~~~~---t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~ 370 (954)
+|+||||++.... ..++..|++|+||+.+.+..
T Consensus 135 ~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~-------------------------------------------- 170 (241)
T cd00306 135 VVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGT-------------------------------------------- 170 (241)
T ss_pred EEEecCCCCCCCCCCccCCccCCceEEEEecCcCCC--------------------------------------------
Confidence 9999999998766 46778899999998653211
Q ss_pred ccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcC
Q 042478 371 DCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRAR 450 (954)
Q Consensus 371 ~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~ 450 (954)
T Consensus 171 -------------------------------------------------------------------------------- 170 (241)
T cd00306 171 -------------------------------------------------------------------------------- 170 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCceeecccCCCcc-cccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHH
Q 042478 451 SPIAKLSSPETVIGDLVSPRV-ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529 (954)
Q Consensus 451 ~~~~~i~~~~~~~~~~~~~~~-a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~ 529 (954)
. ..++++|+ |||+.|||.++...... ....|..++|||||||+|||+
T Consensus 171 --------------------~~~~~~~~~~--------~~~~~apg~~~~~~~~~----~~~~~~~~~GTS~Aap~vaG~ 218 (241)
T cd00306 171 --------------------PASPSSNGGA--------GVDIAAPGGDILSSPTT----GGGGYATLSGTSMAAPIVAGV 218 (241)
T ss_pred --------------------ccCCcCCCCC--------CceEEeCcCCccCcccC----CCCCeEeeccHHHHHHHHHHH
Confidence 1 13444444 56999999999885111 136899999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhc
Q 042478 530 AALIKSLHRDWSPAAIRSALVTT 552 (954)
Q Consensus 530 aALl~q~~P~~sp~~Iks~L~~T 552 (954)
+||++|++|++++.++|++|++|
T Consensus 219 ~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 219 AALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999875
No 53
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=5.1e-28 Score=259.87 Aligned_cols=192 Identities=23% Similarity=0.203 Sum_probs=139.2
Q ss_pred CchhhhccccccccceeccCCCcEEEEEEecCCCCChHHHHHHHHHH--hcCCccEEEecccCCCCCCCc---cCcccHH
Q 042478 206 NASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKA--IHDGVDVLSVSIGNEIPLFSY---IDQRDSI 280 (954)
Q Consensus 206 G~GTa~v~G~a~G~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~A--i~dgvdVINlSlG~~~~~~~~---~~~~d~~ 280 (954)
|||| ||+|+++|. .|++|+|+|+..++.. .....+.++++|+ .+.+++|||||||+..... . ....+.+
T Consensus 38 ~HGT-hVAgiiag~-~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G~~~~~~-~~~~~~~~~~l 111 (247)
T cd07488 38 DHAT-LVASIMGGR-DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYGEGLKRD-PRAVLYGYALL 111 (247)
T ss_pred CHHH-HHHHHHHhc-cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCccCCCCC-ccccccccchH
Confidence 8999 999998886 5788999998766532 2334467788888 6789999999999875221 0 0111456
Q ss_pred HHHHHHHHHC-CCEEEEeCCCCCCCCC-----ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCcee
Q 042478 281 AIGSFHAIAK-GITVVSSAGNDGPVAQ-----TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT 354 (954)
Q Consensus 281 ~~a~~~A~~~-Gi~VV~AAGN~G~~~~-----t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~ 354 (954)
..+++.+.++ |+++|+||||+|.+.. ..+..++++|+|||++....
T Consensus 112 ~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------------------------- 163 (247)
T cd07488 112 SLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------------------------- 163 (247)
T ss_pred HHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------------------------
Confidence 7778877766 9999999999997532 23456788999998643211
Q ss_pred eeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEe
Q 042478 355 GLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKV 434 (954)
Q Consensus 355 ~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i 434 (954)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceE
Q 042478 435 NYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYA 514 (954)
Q Consensus 435 ~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~ 514 (954)
....+.||++|-....++..||||+|||++|++ +. +.|.
T Consensus 164 ---------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s--~~------~~~~ 202 (247)
T cd07488 164 ---------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSNYNL--PD------GKDD 202 (247)
T ss_pred ---------------------------------cceecccccccCCCCCCCCceeEEEEeeeeEEC--CC------Ccee
Confidence 001234555432222267789999999999999 33 6789
Q ss_pred eecCCCchhHHHHHHHHHHHhhCCCCC------HHHHHHHHHhc
Q 042478 515 LLSGTSMSCPHVAGIAALIKSLHRDWS------PAAIRSALVTT 552 (954)
Q Consensus 515 ~~SGTSMAaP~VAG~aALl~q~~P~~s------p~~Iks~L~~T 552 (954)
.++|||||||||||++|||++++|++. --+++.+|+.+
T Consensus 203 ~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 203 FVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 999999999999999999999987665 45567777665
No 54
>PF00298 Ribosomal_L11: Ribosomal protein L11, RNA binding domain; InterPro: IPR020783 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacteria, plant chloroplast, red algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been shown [] to be in an extended and loosely folded conformation and is likely to be buried within the ribosomal structure.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 1VQN_I 2OTJ_I 3G6E_I 3CME_I 1YIJ_I 1YI2_I 3G4S_I 3CMA_I 3I55_I 1VQ7_I ....
Probab=99.90 E-value=5e-24 Score=180.62 Aligned_cols=69 Identities=54% Similarity=0.782 Sum_probs=68.0
Q ss_pred eCCCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEE
Q 042478 874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 942 (954)
Q Consensus 874 ~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v 942 (954)
|+||+||||+|++|+++|+++|+++++|+||++||||||++|++|+++.+|+++||+|+||||||||+|
T Consensus 1 K~Pp~s~llkkaagi~kGs~~p~~~~vG~it~~~i~eIAk~K~~d~~~~~l~~~~k~v~Gta~SmGi~V 69 (69)
T PF00298_consen 1 KTPPTSWLLKKAAGIKKGSSKPGKEKVGTITLKQIYEIAKIKQKDLNAKSLESAVKSVIGTARSMGIKV 69 (69)
T ss_dssp SSSTHHHHHHHHHTTSSSSSSTTTSSSEEEEHHHHHHHHHHHTTTSSSSSHHHHHHHHHHHHHTTTEEE
T ss_pred CCCChHHHHHHHhCCCCCCCCCCCceeeeecHHHHHHHHHHhhcccccCCHHHHHHHHHHHHhcCceEC
Confidence 689999999999999999999999999999999999999999999999999999999999999999997
No 55
>PF03946 Ribosomal_L11_N: Ribosomal protein L11, N-terminal domain; InterPro: IPR020784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacteria, plant chloroplast, red algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been shown [] to be in an extended and loosely folded conformation and is likely to be buried within the ribosomal structure.; PDB: 2ZJQ_F 2ZJP_F 3CF5_F 2WRJ_K 2WH4_K 2WRL_K 3FIN_L 2X9U_K 3I8I_L 2XUX_K ....
Probab=99.88 E-value=6.2e-23 Score=168.65 Aligned_cols=59 Identities=63% Similarity=1.091 Sum_probs=56.7
Q ss_pred EEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCC-CceeeEEEEEeCCCeE
Q 042478 811 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKA-GYVIPVEITVYDDRSF 869 (954)
Q Consensus 811 ~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~-g~~i~v~i~v~~dr~~ 869 (954)
+|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+ |++|||+|+||+||+|
T Consensus 1 ~i~l~v~aG~A~p~pplgp~LG~~Gin~~~f~k~fN~~T~~~k~G~~v~V~i~v~~d~sf 60 (60)
T PF03946_consen 1 VIKLRVPAGKATPAPPLGPALGPLGINIKKFCKDFNKATKDYKPGIPVPVKITVYNDKSF 60 (60)
T ss_dssp EEEEEEETTSSSSTTTSTHHHHTTTS-HHHHHHHHHHHTTTCTTSSEEEEEEEEETTSEE
T ss_pred CEEEEEecCcccCCCCcCcccccCCCCHHHHHHHHHHHHhcccCCCEEEEEEEEeCCCCC
Confidence 5899999999999999999999999999999999999999988 9999999999999998
No 56
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.5e-21 Score=223.45 Aligned_cols=241 Identities=34% Similarity=0.464 Sum_probs=180.0
Q ss_pred ccccccC--CCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCC
Q 042478 129 SKNLSTE--SNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMIN 206 (954)
Q Consensus 129 ~~~~w~~--~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G 206 (954)
....|.. +.+|+||.|+|||+||+..||+|.+.... . .+|... ++.. .+.+.+|
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~--~------------~~~~~~-~~~~---------~~~d~~~ 184 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA--G------------GDFVDG-DPEP---------PFLDDNG 184 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccccc--c------------cccccC-CCCC---------CCCCCCC
Confidence 4467777 89999999999999999999999865332 0 001000 0000 0112227
Q ss_pred chhhhccccccc-------cceeccCCCcEEEEEEecCC-C-CChHHHHHHHHHHhcCC--ccEEEecccCCCCCCCccC
Q 042478 207 ASTNTDEGLAAG-------LARGGAPLAHLAIYKACWDI-G-CTDADVLKAFDKAIHDG--VDVLSVSIGNEIPLFSYID 275 (954)
Q Consensus 207 ~GTa~v~G~a~G-------~~~GvAP~A~L~~yKv~~~~-g-~~~~dil~Aid~Ai~dg--vdVINlSlG~~~~~~~~~~ 275 (954)
||| |++|..++ ...|+||+++++.+|++... | ...++++.+++++++.+ +++||||+|... .. ...
T Consensus 185 hGt-~vag~ia~~~~~~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~-~~-~~~ 261 (508)
T COG1404 185 HGT-HVAGTIAAVIFDNGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSL-SD-SAS 261 (508)
T ss_pred Ccc-eeeeeeeeecccCCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCc-cc-ccc
Confidence 999 99997766 37899999999999999865 5 66778899999999999 999999999851 11 222
Q ss_pred cccHHHHHHHHHHHCC-CEEEEeCCCCCCCCCc----cccCC--CceEEEcccccCCCccceeecCCCeEEeeeeeeccC
Q 042478 276 QRDSIAIGSFHAIAKG-ITVVSSAGNDGPVAQT----IVNTA--PWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGK 348 (954)
Q Consensus 276 ~~d~~~~a~~~A~~~G-i~VV~AAGN~G~~~~t----~~~~a--p~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~ 348 (954)
..+..++..++..| +++|+|+||+|.+... .+... +.+++|+|.+
T Consensus 262 --~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~-------------------------- 313 (508)
T COG1404 262 --PALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD-------------------------- 313 (508)
T ss_pred --HHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC--------------------------
Confidence 56777888888777 9999999999966421 11111 2444444421
Q ss_pred cCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcc
Q 042478 349 VSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNL 428 (954)
Q Consensus 349 ~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ 428 (954)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEe-----cCC
Q 042478 429 IPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILS-----AYP 503 (954)
Q Consensus 429 ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~s-----a~~ 503 (954)
..+.++.||++|+.. ..|++|||.+|.+ .++
T Consensus 314 --------------------------------------~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~ 349 (508)
T COG1404 314 --------------------------------------LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLP 349 (508)
T ss_pred --------------------------------------CCCccccccccCCCC------CcceeCCCccccccccceeee
Confidence 124567899999851 1299999999998 555
Q ss_pred CCCCCCCCc--eEeecCCCchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhccc
Q 042478 504 PIGSKDIQG--YALLSGTSMSCPHVAGIAALIKSLHR-DWSPAAIRSALVTTAS 554 (954)
Q Consensus 504 ~~~~~~~~~--y~~~SGTSMAaP~VAG~aALl~q~~P-~~sp~~Iks~L~~TA~ 554 (954)
+ .. |..++||||++|||+|++||+++.+| .+++.+++..+.+++.
T Consensus 350 ~------~~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
T COG1404 350 G------DGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAG 397 (508)
T ss_pred C------CccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccc
Confidence 4 34 99999999999999999999999999 8999999999888877
No 57
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.9e-17 Score=171.88 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=65.4
Q ss_pred CceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCC-------CCCCCCCCCCCCCcc
Q 042478 511 QGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGS-------TRKEADPFDIGGGHV 583 (954)
Q Consensus 511 ~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~-------~~~~~~~~~~GaG~v 583 (954)
.....-||||.|+|-.||+.||-++++|.++..+++.+-.-|.++.. +.|... .....-+..||+|.+
T Consensus 376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrns-----lfd~~~rf~w~mngvglefnhlfgfgvl 450 (629)
T KOG3526|consen 376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNS-----LFDGRCRFEWQMNGVGLEFNHLFGFGVL 450 (629)
T ss_pred ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccch-----hhcccceEEEeccccceeeecccccccc
Confidence 34567899999999999999999999999999999988777766532 111100 112234557999999
Q ss_pred CcccccCCCccccCCchhHHHhhhcCC
Q 042478 584 NPNKAMNPGLVYDITVEDYIQFLCFMG 610 (954)
Q Consensus 584 n~~~Al~pglvyd~~~~dy~~flc~~g 610 (954)
|+.+.+....-+...+..| -|..|
T Consensus 451 dagamv~lak~wktvppry---hc~ag 474 (629)
T KOG3526|consen 451 DAGAMVMLAKAWKTVPPRY---HCTAG 474 (629)
T ss_pred cHHHHHHHHHHhccCCCce---eeccc
Confidence 9988776555555555443 46555
No 58
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.69 E-value=1.9e-16 Score=180.36 Aligned_cols=104 Identities=27% Similarity=0.312 Sum_probs=81.3
Q ss_pred cceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcC---CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEE
Q 042478 219 LARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHD---GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVV 295 (954)
Q Consensus 219 ~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~d---gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV 295 (954)
.+.||||+|+|..|+++++. ..+++.++.+++++ +++|||+|||...... ...+.+.+..++.+|..+||+||
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~-~~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSL-PPAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCcccccc-CHHHHHHHHHHHHHHHhCCeEEE
Confidence 36899999999999998542 46678888888887 9999999999975111 00111467778888999999999
Q ss_pred EeCCCCCCCCC-----------ccccCCCceEEEcccccCCC
Q 042478 296 SSAGNDGPVAQ-----------TIVNTAPWIITVGATTIDRA 326 (954)
Q Consensus 296 ~AAGN~G~~~~-----------t~~~~ap~vitVgAs~~d~~ 326 (954)
+||||+|.... ..++..|||++||+++....
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 99999997653 24578899999999876653
No 59
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.30 E-value=2.4e-11 Score=117.46 Aligned_cols=120 Identities=36% Similarity=0.555 Sum_probs=97.8
Q ss_pred eecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCc-hHHHHHHHHHHcC
Q 042478 331 ITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQ-DIQSAAISVTQAG 409 (954)
Q Consensus 331 ~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~-~~~~k~~~~~~aG 409 (954)
++|||++++.|++++.... ..+++++.... ........|.+..++..+++||||+|++ +.| .+.+|..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~v~GkIVlc~~--~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSAN-SGDVDASLCLPGSLDPSKVKGKIVLCDR--GGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCc-CCCCccccCCCCCCChhhccccEEEEeC--CCCccHHHHHHHHHHcC
Confidence 6789999999999996554 45677653221 2344558899988888999999999999 778 9999999999999
Q ss_pred ceEEEEEecCCCC---CCCCcccceEEeehhhHHHHHHHHhhcCCCccc
Q 042478 410 GVGLIYAQFHTDG---LDSCNLIPCIKVNYEVGTQILSYIRRARSPIAK 455 (954)
Q Consensus 410 a~gvi~~n~~~~~---~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~ 455 (954)
|.|+|++++..+. ......+|+++|+.++|+.|++|++++..++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999987654 223468999999999999999999988766554
No 60
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.21 E-value=6.5e-11 Score=117.14 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=89.2
Q ss_pred ceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCC----CCCc
Q 042478 352 GFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGL----DSCN 427 (954)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~----~~~~ 427 (954)
...++++. ..|...++...+++||||||+| |.|.+.+|..+++++||.|+|++|+..... ....
T Consensus 26 ~~~~lv~~----------g~g~~~d~~~~dv~GkIvL~~r--g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~ 93 (143)
T cd02133 26 KTYELVDA----------GLGTPEDFEGKDVKGKIALIQR--GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAV 93 (143)
T ss_pred cEEEEEEc----------cCCchhccCCCCccceEEEEEC--CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCC
Confidence 35677764 3455556667789999999999 889999999999999999999999876541 1235
Q ss_pred ccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCC
Q 042478 428 LIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPN 480 (954)
Q Consensus 428 ~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~ 480 (954)
.+|+++|+.++|+.|++|+++ .+++.+..+.. ..+.+.++.||||||.
T Consensus 94 ~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 94 FIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred eEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 689999999999999999987 55555555444 4577889999999996
No 61
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.92 E-value=3.2e-09 Score=94.37 Aligned_cols=78 Identities=31% Similarity=0.564 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCCCchhchhhHHHHHHHHhCcc----ccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCce
Q 042478 34 VHIVYMGEKKYEDPVAITKSHHRFLSTVLGSK----EAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGI 109 (954)
Q Consensus 34 ~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~----~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~ 109 (954)
+|||.|++... .......|.+++.+++.+. .....++++.|+..||||+++|+++++++|+++|+|++|+||+.
T Consensus 1 ~YIV~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~ 78 (82)
T PF05922_consen 1 RYIVVFKDDAS--AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV 78 (82)
T ss_dssp EEEEEE-TTST--HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred CEEEEECCCCC--cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence 59999999732 2223577888887665432 23577899999999999999999999999999999999999999
Q ss_pred eecc
Q 042478 110 LKLH 113 (954)
Q Consensus 110 ~~l~ 113 (954)
+++|
T Consensus 79 v~l~ 82 (82)
T PF05922_consen 79 VSLH 82 (82)
T ss_dssp EEE-
T ss_pred EecC
Confidence 9875
No 62
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.70 E-value=6.4e-08 Score=93.13 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=71.8
Q ss_pred CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-----C-C--CCcccceEEeehhhHH
Q 042478 369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-----L-D--SCNLIPCIKVNYEVGT 440 (954)
Q Consensus 369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-----~-~--~~~~ip~~~i~~~~g~ 440 (954)
.+.|.+..++..+++|||+||+| |.|.|.+|..+++++||.|+|++|+.... . . ....+|.++|+.++|+
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~r--g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~ 106 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDR--GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGA 106 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHH
Confidence 47899888888899999999999 89999999999999999999999987632 1 1 3456999999999999
Q ss_pred HHHHHHhhcCCCcc
Q 042478 441 QILSYIRRARSPIA 454 (954)
Q Consensus 441 ~l~~~~~s~~~~~~ 454 (954)
.|++++..+.+.++
T Consensus 107 ~l~~~l~~g~~v~~ 120 (122)
T cd04816 107 ALRRRLGAGETLEL 120 (122)
T ss_pred HHHHHHcCCCEEEE
Confidence 99999987765443
No 63
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.66 E-value=3.4e-08 Score=91.41 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=63.9
Q ss_pred CCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-------CCCCcccceEEeehhhHH
Q 042478 368 SANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-------LDSCNLIPCIKVNYEVGT 440 (954)
Q Consensus 368 ~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-------~~~~~~ip~~~i~~~~g~ 440 (954)
....|.+..+...+++||||||+| |.|+|.+|..+++++||.|+|++|..... ......||+++|+.++|+
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~r--g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~ 95 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVER--GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGE 95 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEES--TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHH
T ss_pred CcccccccccCCccccceEEEEec--CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHh
Confidence 345677778888999999999999 99999999999999999999999922111 345688999999999999
Q ss_pred HHHHHH
Q 042478 441 QILSYI 446 (954)
Q Consensus 441 ~l~~~~ 446 (954)
.|++|+
T Consensus 96 ~L~~~i 101 (101)
T PF02225_consen 96 ALLAYI 101 (101)
T ss_dssp HHHHHH
T ss_pred hhhccC
Confidence 999986
No 64
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.63 E-value=1.6e-07 Score=91.96 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=72.1
Q ss_pred CCCccCCCCC--CcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCC-CC------CCCCcccceEEeehhh
Q 042478 368 SANDCRQGSL--NATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT-DG------LDSCNLIPCIKVNYEV 438 (954)
Q Consensus 368 ~~~~C~~~~~--~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~-~~------~~~~~~ip~~~i~~~~ 438 (954)
..+.|.+... ++.++.|+|+|++| |.|+|.+|..+++++||.++|+||+.. .. ......+|+++|+..+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~R--G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~ 120 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQR--GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPK 120 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHH
Confidence 4578998776 56789999999999 999999999999999999999999886 21 1223468999999999
Q ss_pred HHHHHHHHhhcCCCccc
Q 042478 439 GTQILSYIRRARSPIAK 455 (954)
Q Consensus 439 g~~l~~~~~s~~~~~~~ 455 (954)
|+.|++++..+.+.+.+
T Consensus 121 G~~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 121 GMEILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHHHcCCcEEEe
Confidence 99999999887765543
No 65
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.62 E-value=1.5e-07 Score=89.45 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=72.7
Q ss_pred eeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-----C--CC
Q 042478 353 FTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-----L--DS 425 (954)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-----~--~~ 425 (954)
.+|++.. +....|.+..+.+.+++|||+|++| |.|+|.+|..+++++||.++|+||+.... . ..
T Consensus 21 ~~~~~~~-------~~~~gC~~~~~~~~~l~gkIaLV~R--G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~ 91 (120)
T cd02129 21 LLPLRNL-------TSSVLCSASDVPPGGLKGKAVVVMR--GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYE 91 (120)
T ss_pred ceeeecC-------CCcCCCCccccCccccCCeEEEEEC--CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCc
Confidence 4566643 3447799988888899999999999 99999999999999999999999997642 1 13
Q ss_pred CcccceEEeehhhHHHHHHHHhh
Q 042478 426 CNLIPCIKVNYEVGTQILSYIRR 448 (954)
Q Consensus 426 ~~~ip~~~i~~~~g~~l~~~~~s 448 (954)
...||+++|+.++|+.|.+.+..
T Consensus 92 ~v~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 92 KIDIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred CCcccEEEEeHHHHHHHHHHhcc
Confidence 46789999999999999988764
No 66
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.56 E-value=6.4e-07 Score=86.21 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=68.4
Q ss_pred CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCC-CC------CCCCcccceEEeehhhHHH
Q 042478 369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT-DG------LDSCNLIPCIKVNYEVGTQ 441 (954)
Q Consensus 369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~-~~------~~~~~~ip~~~i~~~~g~~ 441 (954)
...|.+..+ +.+++|||+|++| |.|.|.+|..+++++||.|+|+||+.. .. ..+...+|+++|+.++|+.
T Consensus 31 ~~gC~~~~~-~~~~~gkIvlv~r--g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~ 107 (122)
T cd02130 31 NLGCDAADY-PASVAGNIALIER--GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKA 107 (122)
T ss_pred CCCCCcccC-CcCCCCEEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHH
Confidence 347877555 3579999999999 999999999999999999999999873 22 1234579999999999999
Q ss_pred HHHHHhhcCCCcc
Q 042478 442 ILSYIRRARSPIA 454 (954)
Q Consensus 442 l~~~~~s~~~~~~ 454 (954)
|+..+..+.+.++
T Consensus 108 L~~~l~~g~~v~~ 120 (122)
T cd02130 108 LVAALANGGEVSA 120 (122)
T ss_pred HHHHHhcCCcEEE
Confidence 9999988766544
No 67
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.54 E-value=3.2e-07 Score=87.78 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=69.3
Q ss_pred CCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC--C-----CCCcccceEEeehhhHH
Q 042478 368 SANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG--L-----DSCNLIPCIKVNYEVGT 440 (954)
Q Consensus 368 ~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~--~-----~~~~~ip~~~i~~~~g~ 440 (954)
..+.|.+..+. .+++|||+||+| |.|+|.+|..+++++||.|+|++|+.... . .....+|+++|+.++|+
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~r--g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~ 102 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDR--GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD 102 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEEC--CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence 45689888774 459999999998 88999999999999999999999987642 1 12357999999999999
Q ss_pred HHHHHHhhcCCCc
Q 042478 441 QILSYIRRARSPI 453 (954)
Q Consensus 441 ~l~~~~~s~~~~~ 453 (954)
.|++|++.+...+
T Consensus 103 ~l~~~l~~g~~v~ 115 (118)
T cd04818 103 ALKAALAAGGTVT 115 (118)
T ss_pred HHHHHHhcCCcEE
Confidence 9999998766544
No 68
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.54 E-value=3.5e-07 Score=87.21 Aligned_cols=85 Identities=21% Similarity=0.246 Sum_probs=69.9
Q ss_pred CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC----C---C----CCcccceEEeehh
Q 042478 369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG----L---D----SCNLIPCIKVNYE 437 (954)
Q Consensus 369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~----~---~----~~~~ip~~~i~~~ 437 (954)
.+.|.+.. +..+++|||+|++| |.|+|.+|..+++++||.++|+||+.... . . ....||+++|+..
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~R--G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIER--GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred cccCCCCC-CccccCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHH
Confidence 46798643 35689999999999 99999999999999999999999976541 1 1 2357899999999
Q ss_pred hHHHHHHHHhhcCCCcccc
Q 042478 438 VGTQILSYIRRARSPIAKL 456 (954)
Q Consensus 438 ~g~~l~~~~~s~~~~~~~i 456 (954)
+|+.|++.+..+..+++.|
T Consensus 98 dG~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 98 NGYMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHHHcCCceEEee
Confidence 9999999998887765543
No 69
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.50 E-value=3.8e-07 Score=87.79 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=70.4
Q ss_pred CCCccCCCC--CCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-----C----CCCcccceEEeeh
Q 042478 368 SANDCRQGS--LNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-----L----DSCNLIPCIKVNY 436 (954)
Q Consensus 368 ~~~~C~~~~--~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-----~----~~~~~ip~~~i~~ 436 (954)
....|.++. +...+++||||||+| |.|.+.+|..+++++||.|+|++++.... . .....+|+++|+.
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~--g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~ 106 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRR--GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISY 106 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEEC--CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCH
Confidence 346788877 778899999999998 88999999999999999999999987532 1 1346799999999
Q ss_pred hhHHHHHHHHhhcCCCc
Q 042478 437 EVGTQILSYIRRARSPI 453 (954)
Q Consensus 437 ~~g~~l~~~~~s~~~~~ 453 (954)
++|+.|+.|+.++.+.+
T Consensus 107 ~~g~~l~~~~~~~~~v~ 123 (126)
T cd00538 107 ADGEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHHHhcCCceE
Confidence 99999999998765443
No 70
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.48 E-value=5.3e-07 Score=87.19 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=67.3
Q ss_pred CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC------------CC---CCcccceEE
Q 042478 369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG------------LD---SCNLIPCIK 433 (954)
Q Consensus 369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~------------~~---~~~~ip~~~ 433 (954)
.+.|.+... +.+++|||+|++| |.|+|.+|..+++++||.++|++|+..+. .. +...||+++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~R--G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~ 103 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMER--GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVF 103 (126)
T ss_pred hhcccCCCC-ccccCceEEEEEC--CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEE
Confidence 467987543 5579999999999 99999999999999999999999876431 11 245789999
Q ss_pred eehhhHHHHHHHHhhcCCCc
Q 042478 434 VNYEVGTQILSYIRRARSPI 453 (954)
Q Consensus 434 i~~~~g~~l~~~~~s~~~~~ 453 (954)
|+..+|+.|++++..+...+
T Consensus 104 I~~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 104 LFSKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred EEHHHHHHHHHHHHhCCceE
Confidence 99999999999998765543
No 71
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.42 E-value=1.1e-06 Score=85.13 Aligned_cols=96 Identities=11% Similarity=0.027 Sum_probs=71.9
Q ss_pred eeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC----CCCCccc
Q 042478 354 TGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG----LDSCNLI 429 (954)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~----~~~~~~i 429 (954)
+|++.... ......+.|.+...+..+++|||+|++| |.|.|.+|..+++++||.++|+||+.... ..+...+
T Consensus 28 ~p~~~~~~--~~~~~~~gC~~~~~~~~~~~g~IaLv~r--g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~ 103 (129)
T cd02124 28 LPLWALSL--DTSVADDACQPLPDDTPDLSGYIVLVRR--GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSI 103 (129)
T ss_pred ceEEEeec--ccCCCcccCcCCCcccccccCeEEEEEC--CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcce
Confidence 56554321 1223457899876666689999999999 88999999999999999999999987543 2233345
Q ss_pred ceEEeehhhHHHHHHHHhhcCCCcc
Q 042478 430 PCIKVNYEVGTQILSYIRRARSPIA 454 (954)
Q Consensus 430 p~~~i~~~~g~~l~~~~~s~~~~~~ 454 (954)
|.+.+ .++|+.|++.+..+...++
T Consensus 104 ~~~~~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 104 IAAVT-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred eeEEe-HHHHHHHHHHHhcCCeEEE
Confidence 66666 9999999999987755443
No 72
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.40 E-value=1e-06 Score=86.72 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=66.9
Q ss_pred CCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC--C---C----CCcccceEEeehhhH
Q 042478 369 ANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG--L---D----SCNLIPCIKVNYEVG 439 (954)
Q Consensus 369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~--~---~----~~~~ip~~~i~~~~g 439 (954)
.+.|.+.. .+++|||+|++| |.|+|.+|..+++++||.++|+||+.... . . ....||+++|+..+|
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~R--G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G 122 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVER--GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAG 122 (139)
T ss_pred ccccCCCC---cccCCeEEEEEC--CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHH
Confidence 46798764 379999999999 99999999999999999999999876533 1 1 135799999999999
Q ss_pred HHHHHHHhhcCCCc
Q 042478 440 TQILSYIRRARSPI 453 (954)
Q Consensus 440 ~~l~~~~~s~~~~~ 453 (954)
+.|++++..+...+
T Consensus 123 ~~L~~~l~~g~~Vt 136 (139)
T cd02132 123 DALNKSLDQGKKVE 136 (139)
T ss_pred HHHHHHHHcCCcEE
Confidence 99999998776543
No 73
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.38 E-value=1.3e-06 Score=83.17 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC---------CCCCcccceEEeehhh
Q 042478 368 SANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG---------LDSCNLIPCIKVNYEV 438 (954)
Q Consensus 368 ~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~---------~~~~~~ip~~~i~~~~ 438 (954)
..+.|.+. +..+++|||+|++| |.|+|.+|..+++++||.++|+||+.... ......+|+++++.++
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~R--G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~ 101 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLR--GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTS 101 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEEC--CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHH
Confidence 34789766 56789999999999 99999999999999999999999876532 1223578999999999
Q ss_pred HHHHHHHHhh
Q 042478 439 GTQILSYIRR 448 (954)
Q Consensus 439 g~~l~~~~~s 448 (954)
+++|..++..
T Consensus 102 g~~L~~l~~~ 111 (117)
T cd04813 102 YHLLSSLLPK 111 (117)
T ss_pred HHHHHHhccc
Confidence 9999987654
No 74
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.37 E-value=1.4e-06 Score=84.19 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=67.2
Q ss_pred CCccCCCCCC--cc----cccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-C-------------CCCcc
Q 042478 369 ANDCRQGSLN--AT----LAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-L-------------DSCNL 428 (954)
Q Consensus 369 ~~~C~~~~~~--~~----~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-~-------------~~~~~ 428 (954)
.+.|.+.... +. ...++|+|++| |.|+|.+|..+++++||.++|+||+..+. . .+...
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R--G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR--GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC--CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCce
Confidence 4678875542 22 37889999999 99999999999999999999999986542 1 11236
Q ss_pred cceEEeehhhHHHHHHHHhhcCCCcc
Q 042478 429 IPCIKVNYEVGTQILSYIRRARSPIA 454 (954)
Q Consensus 429 ip~~~i~~~~g~~l~~~~~s~~~~~~ 454 (954)
||+++|+.++|+.|++.+..+...+.
T Consensus 100 IP~v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 100 IPSALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EeEEEECHHHHHHHHHHHhcCCeEEE
Confidence 89999999999999999988765543
No 75
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.34 E-value=1.7e-06 Score=84.58 Aligned_cols=72 Identities=21% Similarity=0.179 Sum_probs=60.5
Q ss_pred CCCcccccceEEEEecCCCCch-----HHHHHHHHHHcCceEEEEEecC--CCC----CCC---CcccceEEeehhhHHH
Q 042478 376 SLNATLAAGKIILCFSRPDTQD-----IQSAAISVTQAGGVGLIYAQFH--TDG----LDS---CNLIPCIKVNYEVGTQ 441 (954)
Q Consensus 376 ~~~~~~v~Gkivl~~~~~g~~~-----~~~k~~~~~~aGa~gvi~~n~~--~~~----~~~---~~~ip~~~i~~~~g~~ 441 (954)
++...+++|||+|++| |.|. |.+|..+++++||.|+|+||+. .+. ..+ ...||+++|++++|+.
T Consensus 49 d~~~~d~~GkIaLI~R--G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~ 126 (139)
T cd04817 49 SYICGGMAGKICLIER--GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQA 126 (139)
T ss_pred cccCCCcCccEEEEEC--CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHH
Confidence 3445689999999999 8999 9999999999999999999997 432 122 4589999999999999
Q ss_pred HHHHHhhc
Q 042478 442 ILSYIRRA 449 (954)
Q Consensus 442 l~~~~~s~ 449 (954)
|+..+..+
T Consensus 127 L~~~l~~~ 134 (139)
T cd04817 127 LLAALGQS 134 (139)
T ss_pred HHHHhcCC
Confidence 99887543
No 76
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.29 E-value=2.7e-06 Score=85.08 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=68.0
Q ss_pred CCccCCCCCCc---ccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC----CC-----CCcccceEEeeh
Q 042478 369 ANDCRQGSLNA---TLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG----LD-----SCNLIPCIKVNY 436 (954)
Q Consensus 369 ~~~C~~~~~~~---~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~----~~-----~~~~ip~~~i~~ 436 (954)
.+.|.+....+ .++.|+|+|++| |.|+|.+|..+++++||.++|++|+..+. .. ....||+++|+.
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R--G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~ 127 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR--GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGK 127 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC--CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeH
Confidence 46898766533 789999999999 99999999999999999999999987543 11 145799999999
Q ss_pred hhHHHHHHHHhhcCC
Q 042478 437 EVGTQILSYIRRARS 451 (954)
Q Consensus 437 ~~g~~l~~~~~s~~~ 451 (954)
++|+.|+.++.....
T Consensus 128 ~dg~~L~~~l~~~~~ 142 (153)
T cd02123 128 STGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHHhcCCc
Confidence 999999999876543
No 77
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=5e-05 Score=94.60 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=57.0
Q ss_pred ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCc-cEEEecccCCCCCCC-ccCcccHHHHHHHHHHHCCCEEEEe
Q 042478 220 ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGV-DVLSVSIGNEIPLFS-YIDQRDSIAIGSFHAIAKGITVVSS 297 (954)
Q Consensus 220 ~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgv-dVINlSlG~~~~~~~-~~~~~d~~~~a~~~A~~~Gi~VV~A 297 (954)
..-+||+|+|..|-+- . ........|++.-...=+ -+|-+||+....... +...-+.+..-...|..+||.+++|
T Consensus 288 s~A~AP~A~I~lvvap--~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AA 364 (1174)
T COG4934 288 SHAMAPKANIDLVVAP--N-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAA 364 (1174)
T ss_pred hhccCccCceEEEEcC--C-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEe
Confidence 4679999999998662 1 222222233332222211 233356665321110 1111134555556778999999999
Q ss_pred CCCCCCCCCc--------cccCCCceEEEcc
Q 042478 298 AGNDGPVAQT--------IVNTAPWIITVGA 320 (954)
Q Consensus 298 AGN~G~~~~t--------~~~~ap~vitVgA 320 (954)
+|.+|....+ .++.+||+++||-
T Consensus 365 SGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 365 SGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred cccccccCCCcccceeecccCCCccEEeecC
Confidence 9999866542 3467899999996
No 78
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.01 E-value=5.1e-05 Score=73.56 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=60.5
Q ss_pred CCCcccccceEEEEecCCCCc--hHHHHHHHHHHcCceEEEEEecCCCCC----------CCCcccceEEeehhhHHHHH
Q 042478 376 SLNATLAAGKIILCFSRPDTQ--DIQSAAISVTQAGGVGLIYAQFHTDGL----------DSCNLIPCIKVNYEVGTQIL 443 (954)
Q Consensus 376 ~~~~~~v~Gkivl~~~~~g~~--~~~~k~~~~~~aGa~gvi~~n~~~~~~----------~~~~~ip~~~i~~~~g~~l~ 443 (954)
++...+++||||++++ |.| .+.+|..++.++||.|+|++|+..... .....+|++.|+.++|+.|.
T Consensus 37 d~~~~~v~GkIvlv~~--g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~ 114 (127)
T cd04819 37 DFDGLDLEGKIAVVKR--DDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLA 114 (127)
T ss_pred HcCCCCCCCeEEEEEc--CCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHH
Confidence 3445679999999999 778 889999999999999999998765431 12357999999999999999
Q ss_pred HHHhhcC
Q 042478 444 SYIRRAR 450 (954)
Q Consensus 444 ~~~~s~~ 450 (954)
..++.+.
T Consensus 115 ~~l~~g~ 121 (127)
T cd04819 115 RVAERND 121 (127)
T ss_pred HHHhcCC
Confidence 9887643
No 79
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=97.84 E-value=9e-05 Score=70.17 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=59.4
Q ss_pred ecccCCCCceEEEEEEEEecCCCCceeEEEEEc--------CCCc-----------eEEEEcCEEEEecCCeEEEEEEEE
Q 042478 642 TIPNLHNNETVTVTRKVTNVGQINSAYEALVEA--------PYGV-----------NMTVEPEVISFNMTIKILSFRVTF 702 (954)
Q Consensus 642 ~~~~~~~~~~~tv~rtvtNvg~~~~tY~~~v~~--------p~g~-----------~v~v~P~~l~f~~~g~~~~~~Vt~ 702 (954)
++.+. ....+++.|++|.|+.+.+|+++... ..|. .+...|.++++ ++|++++++|++
T Consensus 2 ~L~d~--~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti 78 (112)
T PF06280_consen 2 SLKDT--GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTI 78 (112)
T ss_dssp EEEEE---SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEE
T ss_pred Ccccc--CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEE
Confidence 34444 34578889999999999999998651 1121 56677788888 689999999999
Q ss_pred EeCCccCCCCCCCceEEEEEEECC-cc-eEEcCcc
Q 042478 703 FSNHKVHPVPDAEYRFGSLTWTDD-SV-DSRFNGF 735 (954)
Q Consensus 703 ~~~~~~~~~~~~~~~~G~l~w~~~-~~-~vr~P~~ 735 (954)
+.+..+.+ ..+.+++|+|.+++. .+ .+++|++
T Consensus 79 ~~p~~~~~-~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 79 TPPSGLDA-SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp E--GGGHH-TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EehhcCCc-ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 99653211 346789999999986 44 7999985
No 80
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00032 Score=81.46 Aligned_cols=75 Identities=20% Similarity=0.055 Sum_probs=55.4
Q ss_pred EeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 514 ALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 514 ~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
.--.|||.++|..||+.+|.++++|.++..++..++..++..........+.+ .....-...+|.|++|...-+.
T Consensus 250 e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n--~~g~~~~h~~g~~~~~~~~~~~ 324 (431)
T KOG3525|consen 250 EGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSN--GAGGLVSHLYGFGLLDAKALVS 324 (431)
T ss_pred ccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEe--cCCceeeeeecccccCcchhhh
Confidence 44569999999999999999999999999999999988887654333233322 1222233468999999876554
No 81
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.09 E-value=0.0014 Score=64.21 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=59.0
Q ss_pred CcccccceEEEEecCCCCc------hHHHH-------HHHHHHcCceEEEEEecCCC-------C---C-CCCcccceEE
Q 042478 378 NATLAAGKIILCFSRPDTQ------DIQSA-------AISVTQAGGVGLIYAQFHTD-------G---L-DSCNLIPCIK 433 (954)
Q Consensus 378 ~~~~v~Gkivl~~~~~g~~------~~~~k-------~~~~~~aGa~gvi~~n~~~~-------~---~-~~~~~ip~~~ 433 (954)
+..+++||||++.+ +.| .+..| ...++++||.|+|++|.... . . .....+|++.
T Consensus 34 ~~~~v~GKIvlv~~--~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 34 PAGAVKGKIVFFNQ--PMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred chhhcCCeEEEecC--CccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence 45689999999999 889 88887 68999999999999985421 1 1 2235699999
Q ss_pred eehhhHHHHHHHHhhcCCC
Q 042478 434 VNYEVGTQILSYIRRARSP 452 (954)
Q Consensus 434 i~~~~g~~l~~~~~s~~~~ 452 (954)
|+.++++.|...++.+..+
T Consensus 112 is~ed~~~L~r~l~~g~~v 130 (134)
T cd04815 112 ISVEDADMLERLAARGKPI 130 (134)
T ss_pred echhcHHHHHHHHhCCCCe
Confidence 9999999999988876543
No 82
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.93 E-value=0.0016 Score=66.48 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=55.9
Q ss_pred cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC--C-------------------------C-------
Q 042478 379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG--L-------------------------D------- 424 (954)
Q Consensus 379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~--~-------------------------~------- 424 (954)
..+++|||+|+++ |.|.+.+|..+++++||+|+|+|++..+. . .
T Consensus 51 gv~v~GkIvLvr~--G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~ 128 (183)
T cd02128 51 GVSVNGSVVLVRA--GKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPS 128 (183)
T ss_pred CCCCCCeEEEEEC--CCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcc
Confidence 4579999999999 88999999999999999999999884210 0 0
Q ss_pred ---CCcccceEEeehhhHHHHHHHHhh
Q 042478 425 ---SCNLIPCIKVNYEVGTQILSYIRR 448 (954)
Q Consensus 425 ---~~~~ip~~~i~~~~g~~l~~~~~s 448 (954)
....||+.-|+..++..|++.+.-
T Consensus 129 ~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 129 QSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 013589999999999999998754
No 83
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.30 E-value=0.014 Score=58.00 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCccCCCCCCcccccceEEEEecCC----------------CCchHHHHHHHHHHcCceEEEEEecCCCCCCCCccc---
Q 042478 369 ANDCRQGSLNATLAAGKIILCFSRP----------------DTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLI--- 429 (954)
Q Consensus 369 ~~~C~~~~~~~~~v~Gkivl~~~~~----------------g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~i--- 429 (954)
...|....+...+++|||||+.+.. ..|.+..|..++.++||.|||+|++.....+.....
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~~~~~~~~~ 112 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSGDADRLPRF 112 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCccccccccc
Confidence 4567777777889999999997731 126788999999999999999999876542222112
Q ss_pred ---ceEEeehhhHHHHHHH
Q 042478 430 ---PCIKVNYEVGTQILSY 445 (954)
Q Consensus 430 ---p~~~i~~~~g~~l~~~ 445 (954)
..++++....+.+...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 113 GGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred CccceEEechHHHHHHhhh
Confidence 2566666666666553
No 84
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.24 E-value=0.013 Score=57.73 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=48.8
Q ss_pred eeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCc------------------hHHHHHHHHHHcCceEEE
Q 042478 353 FTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQ------------------DIQSAAISVTQAGGVGLI 414 (954)
Q Consensus 353 ~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~------------------~~~~k~~~~~~aGa~gvi 414 (954)
..++++..-. .....|...++...|++||||++.+ |.| .+..|..++.++||.|+|
T Consensus 21 ~aelVfvGyG----i~a~~~~~dDYag~DVkGKIVlv~~--g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvI 94 (142)
T cd04814 21 DAPLVFVGYG----IKAPELSWDDYAGLDVKGKVVVVLR--NDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVL 94 (142)
T ss_pred ceeeEEecCC----cCCCCCChhhcCCCCCCCcEEEEEc--CCCCcccccccccccccccccCHHHHHHHHHHCCCcEEE
Confidence 4566654311 1235688888888899999999988 555 577899999999999999
Q ss_pred EEecCCC
Q 042478 415 YAQFHTD 421 (954)
Q Consensus 415 ~~n~~~~ 421 (954)
++++...
T Consensus 95 ii~~~~~ 101 (142)
T cd04814 95 IVHELAP 101 (142)
T ss_pred EEeCCCc
Confidence 9998653
No 85
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.87 E-value=0.013 Score=66.78 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=60.3
Q ss_pred cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC---------CCCCcccceEEeehhhHHHHHHHHhhc
Q 042478 379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG---------LDSCNLIPCIKVNYEVGTQILSYIRRA 449 (954)
Q Consensus 379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~---------~~~~~~ip~~~i~~~~g~~l~~~~~s~ 449 (954)
...++||+++..| |.|.|.+|...++++||.++++.|+..+. ...+..||+++++.++++.+.....++
T Consensus 91 ~~kl~~~~~~v~R--GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 91 QSKLSGKVALVFR--GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CccccceeEEEec--ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 4578999999999 99999999999999999999999995433 234578999999999999998765554
Q ss_pred CCC
Q 042478 450 RSP 452 (954)
Q Consensus 450 ~~~ 452 (954)
.+.
T Consensus 169 ~~V 171 (541)
T KOG2442|consen 169 DNV 171 (541)
T ss_pred CeE
Confidence 443
No 86
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.81 E-value=0.016 Score=56.75 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=43.0
Q ss_pred CCccCCCCCCcccccceEEEEecCCCCc------------hHHHHHHHHHHcCceEEEEEecCCC
Q 042478 369 ANDCRQGSLNATLAAGKIILCFSRPDTQ------------DIQSAAISVTQAGGVGLIYAQFHTD 421 (954)
Q Consensus 369 ~~~C~~~~~~~~~v~Gkivl~~~~~g~~------------~~~~k~~~~~~aGa~gvi~~n~~~~ 421 (954)
...|...++...+++|||||+.+ |.| .+..|..++.++||.|+|++++...
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~--g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLS--GGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEc--CCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 35677777778899999999998 554 3778999999999999999998654
No 87
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.084 Score=59.05 Aligned_cols=76 Identities=17% Similarity=0.076 Sum_probs=61.5
Q ss_pred CccCCCCC---CcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-------CCCCcccceEEeehhhH
Q 042478 370 NDCRQGSL---NATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-------LDSCNLIPCIKVNYEVG 439 (954)
Q Consensus 370 ~~C~~~~~---~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-------~~~~~~ip~~~i~~~~g 439 (954)
++|.+..- ........++|+.| |.|+|.+|..+++++|..++|+||+.... ......++.++++...|
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~R--g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~g 140 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRR--GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSG 140 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEc--cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehH
Confidence 56665322 23556778999999 88999999999999999999999987654 34557789999999999
Q ss_pred HHHHHHHh
Q 042478 440 TQILSYIR 447 (954)
Q Consensus 440 ~~l~~~~~ 447 (954)
+.|..|..
T Consensus 141 e~l~~~~~ 148 (348)
T KOG4628|consen 141 ELLSSYAG 148 (348)
T ss_pred HHHHHhhc
Confidence 99998853
No 88
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=94.43 E-value=0.046 Score=57.89 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=37.5
Q ss_pred cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC
Q 042478 379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG 422 (954)
Q Consensus 379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~ 422 (954)
..+++|||||+++ |.+.+..|..+++++||.|+|+|++..+.
T Consensus 67 gvdv~GKIvLvr~--G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~ 108 (220)
T cd02121 67 GIDVKGKIVIARY--GGIFRGLKVKNAQLAGAVGVIIYSDPADD 108 (220)
T ss_pred CCCCCCeEEEEEC--CCccHHHHHHHHHHcCCEEEEEEeCchhc
Confidence 5689999999998 88888899999999999999999986543
No 89
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=94.42 E-value=0.047 Score=53.82 Aligned_cols=41 Identities=15% Similarity=-0.015 Sum_probs=37.1
Q ss_pred ccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC
Q 042478 380 TLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG 422 (954)
Q Consensus 380 ~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~ 422 (954)
-+++|||+|++. |...+..|..++++.||.|+|+|.+..+.
T Consensus 37 V~v~GkIvi~Ry--G~~~RG~Kv~~A~~~GA~GviIYsDP~d~ 77 (153)
T cd02131 37 MNVTNQIALLKL--GQAPLLYKLSLLEEAGFGGVLLYVDPCDL 77 (153)
T ss_pred CCccceEEEEec--cCcchHHHHHHHHHCCCeEEEEecChhhc
Confidence 579999999999 88889999999999999999999986553
No 90
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=93.35 E-value=0.34 Score=42.59 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=38.0
Q ss_pred ceEEEEEEEEecCCCC-ceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCc
Q 042478 650 ETVTVTRKVTNVGQIN-SAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHK 707 (954)
Q Consensus 650 ~~~tv~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~ 707 (954)
...+++.+|+|.|+.. ...++++..|+|-.+...|..+.--++|++++++++++++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 5678899999999754 568888899999998888887764478999999999998753
No 91
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=92.03 E-value=1.8 Score=39.91 Aligned_cols=79 Identities=20% Similarity=0.146 Sum_probs=56.2
Q ss_pred ceEEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCCCceEEEEEEECCcce
Q 042478 650 ETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSVD 729 (954)
Q Consensus 650 ~~~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~G~l~w~~~~~~ 729 (954)
...+.+.+++|.|..+..|++.......-.++++|..-.+ ++|++.+++|+|.+.. .. +...+.|...-....
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-----~~-g~~~~~l~i~~e~~~ 92 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-----PL-GDYEGSLVITTEGGS 92 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-----CC-ceEEEEEEEEECCeE
Confidence 4456667899999999999987644234567778776555 6899999999999644 22 334677777666666
Q ss_pred EEcCcc
Q 042478 730 SRFNGF 735 (954)
Q Consensus 730 vr~P~~ 735 (954)
+..|+-
T Consensus 93 ~~i~v~ 98 (102)
T PF14874_consen 93 FEIPVK 98 (102)
T ss_pred EEEEEE
Confidence 666653
No 92
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=88.76 E-value=0.53 Score=46.12 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=57.0
Q ss_pred CCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC---------CC----CCcccceEEe
Q 042478 368 SANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG---------LD----SCNLIPCIKV 434 (954)
Q Consensus 368 ~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~---------~~----~~~~ip~~~i 434 (954)
....|.... +.-...|.++|.+| |.|+|..|..+++++||.++|+.++.... .+ +...+|+.++
T Consensus 73 Pp~aC~elr-N~~f~~d~vaL~eR--GeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fl 149 (193)
T KOG3920|consen 73 PPHACEELR-NEIFAPDSVALMER--GECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFL 149 (193)
T ss_pred ChhHHHHHh-hcccCCCcEEEEec--CCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEE
Confidence 456676532 23456789999999 99999999999999999999999765432 22 3467899998
Q ss_pred ehhhHHHHHHHHh
Q 042478 435 NYEVGTQILSYIR 447 (954)
Q Consensus 435 ~~~~g~~l~~~~~ 447 (954)
-..+|--+..-++
T Consensus 150 lg~~Gy~ir~sL~ 162 (193)
T KOG3920|consen 150 LGVTGYYIRVSLK 162 (193)
T ss_pred eccceEEEehhHH
Confidence 8887765554443
No 93
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=84.98 E-value=7 Score=37.13 Aligned_cols=54 Identities=19% Similarity=0.096 Sum_probs=38.5
Q ss_pred EEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCc
Q 042478 653 TVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHK 707 (954)
Q Consensus 653 tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~ 707 (954)
..+.+++|....+.+|+++++.++|+.+......+++ ++|++.++.|.+..+..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 3678899999999999999999889999655578888 68999999999998764
No 94
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=82.04 E-value=1.8 Score=43.48 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=34.0
Q ss_pred CCCcccccceEEEEecCCC-C----------------chHHHHHHHHHHcCceEEEEEecCC
Q 042478 376 SLNATLAAGKIILCFSRPD-T----------------QDIQSAAISVTQAGGVGLIYAQFHT 420 (954)
Q Consensus 376 ~~~~~~v~Gkivl~~~~~g-~----------------~~~~~k~~~~~~aGa~gvi~~n~~~ 420 (954)
++...|++||||++.++.. . .....|...+.+.||.|+|++++..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 5567799999999986321 0 1234599999999999999998753
No 95
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=79.05 E-value=15 Score=35.36 Aligned_cols=71 Identities=13% Similarity=0.164 Sum_probs=50.8
Q ss_pred CceEEEEEEEEecCCCCceeEEEEE----cCCCc-------------------eEEEEcCEEEEecCCeEEEEEEEEEeC
Q 042478 649 NETVTVTRKVTNVGQINSAYEALVE----APYGV-------------------NMTVEPEVISFNMTIKILSFRVTFFSN 705 (954)
Q Consensus 649 ~~~~tv~rtvtNvg~~~~tY~~~v~----~p~g~-------------------~v~v~P~~l~f~~~g~~~~~~Vt~~~~ 705 (954)
....++..+|+|.++.+.+|.+++. ...|+ .+.-.|..+++ +++|+++++++++.+
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEE-CCCCEEEEEEEEEcC
Confidence 4678899999999999999999873 11221 01112444666 689999999999988
Q ss_pred CccCCCCCCCceEEEEEEE
Q 042478 706 HKVHPVPDAEYRFGSLTWT 724 (954)
Q Consensus 706 ~~~~~~~~~~~~~G~l~w~ 724 (954)
.. .-.+.+.|-|.+.
T Consensus 105 ~~----~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KK----AFDGIILGGIYFS 119 (121)
T ss_pred CC----CcCCEEEeeEEEE
Confidence 75 5567778888765
No 96
>COG1470 Predicted membrane protein [Function unknown]
Probab=65.52 E-value=31 Score=40.25 Aligned_cols=64 Identities=17% Similarity=0.218 Sum_probs=52.0
Q ss_pred ceEEEEEEEEecCCCC-ceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCCCc
Q 042478 650 ETVTVTRKVTNVGQIN-SAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEY 716 (954)
Q Consensus 650 ~~~tv~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~~~ 716 (954)
...++.-.+.|.|+.+ ..-++++..|.|-.+.|.|.++---++||..++.+|++++.. ..+++|
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~---a~aGdY 461 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPED---AGAGDY 461 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCC---CCCCcE
Confidence 4567788899999865 456788999999999999997755589999999999999864 245556
No 97
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=63.07 E-value=61 Score=30.76 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=38.9
Q ss_pred EEEEEEEecCCCCceeEEEEEc---CCC----ceEEEEcCEEEEecCCeEEEEEEEEEeC
Q 042478 653 TVTRKVTNVGQINSAYEALVEA---PYG----VNMTVEPEVISFNMTIKILSFRVTFFSN 705 (954)
Q Consensus 653 tv~rtvtNvg~~~~tY~~~v~~---p~g----~~v~v~P~~l~f~~~g~~~~~~Vt~~~~ 705 (954)
+...+|+|.|+.+..+.+.+.. ..+ -.+.++|..+.+ ++|+++.++| +...
T Consensus 17 ~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~ 74 (122)
T PF00345_consen 17 SASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGS 74 (122)
T ss_dssp EEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECS
T ss_pred EEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecC
Confidence 4568899999877777777764 111 258899999999 6899999999 6643
No 98
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=61.22 E-value=2.9 Score=38.81 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=33.8
Q ss_pred HhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhcc
Q 042478 914 EKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKE 953 (954)
Q Consensus 914 ~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~ 953 (954)
+++.....+.|+..|++|.-||+.+|+.|-|++|-|.+++
T Consensus 8 I~L~s~d~~~LD~~~~~Ive~akrtg~~v~GPiPLPTk~~ 47 (104)
T COG0051 8 IRLKSFDHRLLDQVCREIVETAKRTGADVKGPIPLPTKRE 47 (104)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHhCCeeeCCccCCCceE
Confidence 4444556688999999999999999999999999887654
No 99
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=58.14 E-value=10 Score=34.82 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=13.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhh
Q 042478 1 MEARKTQLLRILVVILLQHHLQIS 24 (954)
Q Consensus 1 m~~~~~~~l~~~~~~~~~~~~~~~ 24 (954)
|.-++++||.++|+++|++++.++
T Consensus 1 MaSK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhh
Confidence 775555555555555555544444
No 100
>COG1470 Predicted membrane protein [Function unknown]
Probab=53.20 E-value=58 Score=38.11 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=49.7
Q ss_pred ceEEEEEEEEecCCCCceeEEEEE-cCCCceEEEEcCEEEEe----cCCeEEEEEEEEEeCCccCCCCCCCc
Q 042478 650 ETVTVTRKVTNVGQINSAYEALVE-APYGVNMTVEPEVISFN----MTIKILSFRVTFFSNHKVHPVPDAEY 716 (954)
Q Consensus 650 ~~~tv~rtvtNvg~~~~tY~~~v~-~p~g~~v~v~P~~l~f~----~~g~~~~~~Vt~~~~~~~~~~~~~~~ 716 (954)
.+..++.++.|.|..+.+|.+++. .|+|-...+.-..+.++ .+||++.|+|.+.++... ..+.|
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na---~pG~Y 352 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNA---TPGTY 352 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCC---CCCce
Confidence 456788899999999999999998 89988777665444333 689999999999987541 45555
No 101
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=52.23 E-value=70 Score=29.37 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=39.7
Q ss_pred ceEEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCC
Q 042478 650 ETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNH 706 (954)
Q Consensus 650 ~~~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 706 (954)
...+...+|+|.++....|++.-..|.. ..|.|..-.+ .+|++.++.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEecc
Confidence 3455667999999999999998777764 6678998766 6899999999998743
No 102
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=51.36 E-value=51 Score=38.87 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=45.6
Q ss_pred EEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCC
Q 042478 652 VTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNH 706 (954)
Q Consensus 652 ~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 706 (954)
-..+.++.|....+.+|+++++..+|..+...+..+++ ++||+.++.|.+..+.
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 34667899999999999999999999888876457777 6899999999998864
No 103
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=47.03 E-value=64 Score=31.80 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=40.4
Q ss_pred EEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCCCceEEEEEEEC
Q 042478 669 EALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725 (954)
Q Consensus 669 ~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~G~l~w~~ 725 (954)
+++...-..+++.-.|..+++ .+++.++++.++++.. ...++.||.|+|..
T Consensus 89 ~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-----tetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 89 TVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS-----TETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-----ccCCEEEEEEEEec
Confidence 444445566888888988888 6799999999999876 56789999999863
No 104
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=42.89 E-value=67 Score=25.01 Aligned_cols=44 Identities=20% Similarity=0.151 Sum_probs=24.6
Q ss_pred EEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEE
Q 042478 656 RKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTF 702 (954)
Q Consensus 656 rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~ 702 (954)
.+++|.|+.+...+ .++..=|- .+++...-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgC-t~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGC-TTAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCC-EEeeCCcceE-CCCCEEEEEEEC
Confidence 57899997654433 22222232 2222332233 689999988874
No 105
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=38.08 E-value=43 Score=37.12 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=49.0
Q ss_pred ceeccCCCcEEEEEEecCCC-------CChH----------HHHHHHHHHhcCCccEEEecccCCCCCCC----------
Q 042478 220 ARGGAPLAHLAIYKACWDIG-------CTDA----------DVLKAFDKAIHDGVDVLSVSIGNEIPLFS---------- 272 (954)
Q Consensus 220 ~~GvAP~A~L~~yKv~~~~g-------~~~~----------dil~Aid~Ai~dgvdVINlSlG~~~~~~~---------- 272 (954)
++-+||-++|-+-..+|... +..+ .=+.-+++|++.|.+||+ |.|....+++
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 46788888887766666431 1111 114457889999999997 6776542221
Q ss_pred ccCcccHHHHHHHHHH-----HCCCEEEEeC
Q 042478 273 YIDQRDSIAIGSFHAI-----AKGITVVSSA 298 (954)
Q Consensus 273 ~~~~~d~~~~a~~~A~-----~~Gi~VV~AA 298 (954)
... ||+++++.+-. ..||.||+|+
T Consensus 216 t~~--DPlsR~vRrrLrk~GI~~GIpVVFS~ 244 (430)
T KOG2018|consen 216 TEE--DPLSRSVRRRLRKRGIEGGIPVVFSL 244 (430)
T ss_pred ccc--CcHHHHHHHHHHHhccccCCceEEec
Confidence 233 89999887544 3578899984
No 106
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.14 E-value=2.8e+02 Score=28.62 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=36.5
Q ss_pred CceEEEEEEEEecCCCCceeEEEEEc----CCCceEEEEcCEEEEe--cCCeEEEEEEEEEeCC
Q 042478 649 NETVTVTRKVTNVGQINSAYEALVEA----PYGVNMTVEPEVISFN--MTIKILSFRVTFFSNH 706 (954)
Q Consensus 649 ~~~~tv~rtvtNvg~~~~tY~~~v~~----p~g~~v~v~P~~l~f~--~~g~~~~~~Vt~~~~~ 706 (954)
....+|+.+|.|+|+. .-|.+++.. ++.+++.---.+.+|. ++|+..+..+++++..
T Consensus 37 g~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK 99 (181)
T ss_pred CcEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee
Confidence 4578899999999975 578888764 2344432111112222 6788888888888653
No 107
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=33.35 E-value=1.2e+02 Score=26.51 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=30.5
Q ss_pred eEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCCCceEEEEEEECCcc
Q 042478 679 NMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDSV 728 (954)
Q Consensus 679 ~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~G~l~w~~~~~ 728 (954)
.+++.|..+.+ ..|+++.|+++++.... . . ...++|+....
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~-----~-~--~~~v~w~Ssn~ 44 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA-----K-V--TGKVTWTSSNP 44 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC-----C-c--cceEEEEECCC
Confidence 57889999988 47999999999765432 1 1 56788987643
No 108
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=31.98 E-value=17 Score=33.69 Aligned_cols=40 Identities=28% Similarity=0.313 Sum_probs=33.2
Q ss_pred HhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhcc
Q 042478 914 EKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKE 953 (954)
Q Consensus 914 ~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~ 953 (954)
+++.......|+.+|++|+-+|+.-|+++-|+.+-|.++.
T Consensus 5 I~L~S~d~~~Ld~~~~~I~~~ak~~g~~~~GPipLPtk~~ 44 (99)
T TIGR01046 5 IKLTSTNVRSLEKVCAQIKRIAEKTGVRMSGPVPLPTKRL 44 (99)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHcCCEEECCccCCcceE
Confidence 3444456678999999999999999999999998887653
No 109
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=31.66 E-value=2.5e+02 Score=24.87 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=31.1
Q ss_pred CceEEEEEEEEecCCCC-ceeEEEEEcCCCceEEEEcCEE-EEecCCeEEEEEEEEEeC
Q 042478 649 NETVTVTRKVTNVGQIN-SAYEALVEAPYGVNMTVEPEVI-SFNMTIKILSFRVTFFSN 705 (954)
Q Consensus 649 ~~~~tv~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l-~f~~~g~~~~~~Vt~~~~ 705 (954)
....+++.+|+|.|... ..+.+.+... |..+ .-..+ .+ ++|++.++++++...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 35788899999999764 5566665433 2222 11112 33 679988888888775
No 110
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=28.55 E-value=21 Score=33.29 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=33.3
Q ss_pred HhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhcc
Q 042478 914 EKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKE 953 (954)
Q Consensus 914 ~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~ 953 (954)
+++.......|+.+|+.|+-+|+.-|+.+-|+.+-|.+++
T Consensus 6 I~L~S~d~~~Ld~~~~~I~~~~k~~g~~~~GPipLPtk~~ 45 (102)
T PRK12271 6 IRLSSTNPEDLDEVCDQIKEIAEKTGVDMSGPIPLPTKRL 45 (102)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHHcCCeEECCCcCCceeE
Confidence 4444456678999999999999999999999998887653
No 111
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=27.35 E-value=58 Score=24.84 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=19.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 042478 530 AALIKSLHRDWSPAAIRSALVTTA 553 (954)
Q Consensus 530 aALl~q~~P~~sp~~Iks~L~~TA 553 (954)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 346789999999999999996653
No 112
>PTZ00039 40S ribosomal protein S20; Provisional
Probab=24.43 E-value=27 Score=33.26 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=34.2
Q ss_pred HHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhcc
Q 042478 913 TEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKE 953 (954)
Q Consensus 913 ~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~ 953 (954)
++++...+.+.|+.+|+.|+-+|+..|+.|.|+++-|.+++
T Consensus 20 rI~L~S~d~~~Ld~~~~~Ii~~ak~~g~~v~GPipLPtK~~ 60 (115)
T PTZ00039 20 RITLTSKNLKSIEKVCADIITGAKEKNLKVTGPVRMPVKTL 60 (115)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHcCCEeECCccCCceeE
Confidence 44555567788999999999999999999999998776653
No 113
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=24.01 E-value=32 Score=26.06 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=12.4
Q ss_pred ccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcC
Q 042478 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD 851 (954)
Q Consensus 805 ~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~ 851 (954)
+--+..+|-|.|-+|-|+|+|---+. ..++..+|.-+-|++
T Consensus 2 Alwlt~vialtClggLasPgPvp~~~------alkELIeELvNITqn 42 (43)
T PF03487_consen 2 ALWLTVVIALTCLGGLASPGPVPSST------ALKELIEELVNITQN 42 (43)
T ss_dssp ---------------------S-HHH------HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhcccCCCCCCCchH------HHHHHHHHHHhhccC
Confidence 34456688999999999998742222 567888888777765
No 114
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=23.30 E-value=38 Score=16.76 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=4.4
Q ss_pred ccCCCC
Q 042478 473 SFSSRG 478 (954)
Q Consensus 473 ~FSS~G 478 (954)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577876
Done!