Query 042478
Match_columns 954
No_of_seqs 619 out of 3967
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i6s_A Subtilisin-like proteas 100.0 2E-120 8E-125 1094.8 49.6 597 114-739 1-645 (649)
2 3vta_A Cucumisin; subtilisin-l 100.0 2E-109 8E-114 1001.4 47.1 586 114-738 1-619 (621)
3 1xf1_A C5A peptidase, SCP; hyd 100.0 3.2E-80 1.1E-84 776.1 42.3 527 129-737 6-604 (926)
4 3bbo_K Ribosomal protein L11; 100.0 5E-59 1.7E-63 467.8 15.0 198 748-954 24-222 (224)
5 3afg_A Subtilisin-like serine 100.0 1.9E-55 6.4E-60 521.8 32.9 352 30-591 33-418 (539)
6 2z2z_A TK-subtilisin precursor 100.0 2.9E-53 9.8E-58 487.0 22.5 339 32-591 2-392 (395)
7 1mms_A Protein (ribosomal prot 100.0 1.3E-52 4.5E-57 400.1 16.0 139 806-944 2-140 (140)
8 3t41_A Epidermin leader peptid 100.0 2E-51 6.7E-56 483.0 28.3 359 30-592 42-466 (471)
9 1y9z_A Alkaline serine proteas 100.0 8E-51 2.7E-55 473.2 27.5 370 129-611 13-436 (441)
10 2p4e_P Proprotein convertase s 100.0 3.9E-53 1.3E-57 504.7 7.9 339 33-556 76-422 (692)
11 3iz5_J 60S ribosomal protein L 100.0 9.8E-52 3.3E-56 403.8 11.6 153 785-954 1-156 (166)
12 3egv_B 50S ribosomal protein L 100.0 6.8E-52 2.3E-56 397.3 8.4 143 806-948 1-143 (146)
13 2ftc_G L11MT, MRP-L11, 39S rib 100.0 1.4E-50 4.9E-55 388.3 16.9 137 808-944 4-145 (145)
14 1vq8_I 50S ribosomal protein L 100.0 2.2E-51 7.5E-56 400.5 8.8 145 810-954 3-147 (162)
15 2zkr_i 60S ribosomal protein L 100.0 1.8E-51 6.2E-56 402.3 7.8 150 793-954 4-155 (165)
16 1r6v_A Subtilisin-like serine 100.0 4.8E-49 1.6E-53 472.5 28.6 365 28-602 27-450 (671)
17 3j21_H 50S ribosomal protein L 100.0 5.9E-51 2E-55 398.3 4.4 145 810-954 4-149 (164)
18 3r8s_I 50S ribosomal protein L 100.0 2E-52 7E-57 398.7 -14.4 140 805-944 1-141 (141)
19 4h6x_A Thiazoline oxidase/subt 100.0 4.6E-47 1.6E-51 429.6 14.4 290 129-590 20-337 (357)
20 1r0r_E Subtilisin carlsberg; h 100.0 4E-46 1.4E-50 406.9 19.9 252 129-590 13-274 (274)
21 1dbi_A AK.1 serine protease; h 100.0 1E-45 3.4E-50 404.9 22.7 250 129-590 20-279 (280)
22 1gci_A Subtilisin; hydrolase, 100.0 7E-46 2.4E-50 403.7 20.9 251 129-590 13-269 (269)
23 1to2_E Subtilisin BPN'; serine 100.0 7.9E-46 2.7E-50 405.9 20.3 255 129-592 13-277 (281)
24 2x8j_A Intracellular subtilisi 100.0 6E-46 2E-50 415.4 18.3 259 129-590 30-310 (327)
25 2ixt_A 36KDA protease; serine 100.0 6E-45 2.1E-49 404.9 24.6 274 129-585 15-309 (310)
26 1thm_A Thermitase; hydrolase(s 100.0 5.3E-45 1.8E-49 399.1 22.6 249 129-590 20-278 (279)
27 3zxy_A Subtilisin-like protein 100.0 1.9E-45 6.4E-50 403.6 16.9 257 136-590 3-274 (282)
28 2z30_A TK-subtilisin; thermoco 100.0 6.5E-45 2.2E-49 406.2 19.6 259 129-590 17-316 (320)
29 3lxu_X Tripeptidyl-peptidase 2 100.0 6.8E-44 2.3E-48 444.1 26.1 347 205-740 270-654 (1354)
30 4h6w_A N-terminal cyanobactin 100.0 4E-45 1.4E-49 405.6 13.0 268 129-590 10-287 (306)
31 2iy9_A SUBA; toxin, shiga, pla 100.0 1.2E-44 4.2E-49 408.7 16.9 268 129-591 32-329 (347)
32 3lpc_A APRB2; protease, subtil 100.0 7.1E-44 2.4E-48 401.4 18.0 280 128-591 20-337 (340)
33 1wmd_A Protease; alpha-beta hy 100.0 1.9E-43 6.5E-48 410.6 20.4 281 129-592 10-319 (434)
34 1sh7_A Extracellular subtilisi 100.0 1E-42 3.5E-47 381.6 23.3 232 129-556 18-256 (284)
35 2oxa_A Extracellular serine pr 100.0 3E-43 1E-47 424.4 17.3 291 128-596 58-430 (600)
36 2pwa_A Proteinase K; structure 100.0 1.1E-42 3.7E-47 380.4 18.8 227 132-556 24-259 (279)
37 4dzt_A Aqualysin-1, aqualysin- 100.0 2.2E-42 7.4E-47 378.0 21.2 236 128-557 19-259 (276)
38 2b6n_A Proteinase K; S binding 100.0 5.8E-42 2E-46 374.8 21.8 234 129-556 20-260 (278)
39 3f7m_A Alkaline serine proteas 100.0 1E-41 3.5E-46 373.3 18.4 229 131-557 24-261 (279)
40 1p8j_A Furin precursor; prohor 100.0 2.2E-41 7.6E-46 396.8 17.5 290 128-593 26-332 (471)
41 2qtw_B Proprotein convertase s 100.0 3E-41 1E-45 392.9 17.2 246 131-556 17-270 (546)
42 2id4_A Kexin; KEX2, kexin, fur 100.0 1.7E-40 5.7E-45 392.0 20.9 277 128-593 42-344 (503)
43 3hjr_A Extracellular serine pr 100.0 7.7E-39 2.6E-43 386.9 24.3 313 128-595 58-429 (600)
44 1wib_A 60S ribosomal protein L 100.0 9.9E-32 3.4E-36 236.2 4.0 88 783-887 5-92 (92)
45 3cjs_B 50S ribosomal protein L 99.9 2.1E-28 7.1E-33 206.5 8.0 71 806-876 2-72 (72)
46 1hc8_A Ribosomal protein L11; 99.9 2.7E-28 9.4E-33 208.5 6.7 76 869-944 1-76 (76)
47 1qa6_A Ribosomal protein L11; 99.9 6.7E-25 2.3E-29 182.9 5.5 67 874-940 1-67 (67)
48 1t1e_A Kumamolisin; proenzyme, 99.9 8E-24 2.7E-28 250.6 8.0 100 219-324 273-384 (552)
49 1ga6_A Serine-carboxyl protein 99.8 6.5E-21 2.2E-25 215.4 9.2 102 221-324 90-207 (372)
50 2w2n_P Proprotein convertase s 99.0 3.1E-10 1.1E-14 106.3 7.0 80 29-112 34-113 (114)
51 3edy_A Tripeptidyl-peptidase 1 98.9 3.3E-09 1.1E-13 124.8 12.4 100 221-323 262-374 (544)
52 3cnq_P Subtilisin BPN'; unclea 98.8 1E-08 3.6E-13 89.6 9.3 74 30-116 6-79 (80)
53 2qtw_A Proprotein convertase s 98.6 4.9E-08 1.7E-12 92.5 7.8 79 30-112 45-123 (124)
54 1v5i_B POIA1, IA-1=serine prot 98.5 4.9E-07 1.7E-11 78.2 8.9 70 33-112 3-75 (76)
55 3icu_A E3 ubiquitin-protein li 98.5 4.6E-07 1.6E-11 92.0 9.8 90 368-459 82-186 (194)
56 2z30_B TK-subtilisin; thermoco 97.0 0.0011 3.8E-08 55.1 6.3 63 33-112 2-64 (65)
57 2ek8_A Aminopeptidase; metallo 96.4 0.0077 2.6E-07 68.9 9.4 69 377-447 108-182 (421)
58 3iib_A Peptidase M28; YP_92679 94.9 0.051 1.7E-06 62.6 8.9 76 379-456 124-223 (444)
59 3kas_A Transferrin receptor pr 94.6 0.036 1.2E-06 66.5 6.7 66 380-447 128-230 (640)
60 3fed_A Glutamate carboxypeptid 94.5 0.038 1.3E-06 67.0 6.5 68 379-448 150-268 (707)
61 2ys4_A Hydrocephalus-inducing 92.0 0.43 1.5E-05 44.4 8.2 52 650-706 41-92 (122)
62 1y9z_A Alkaline serine proteas 87.4 0.4 1.4E-05 54.9 4.7 52 461-522 176-227 (441)
63 3lxu_X Tripeptidyl-peptidase 2 85.3 0.55 1.9E-05 60.0 4.7 25 136-160 32-56 (1354)
64 2e6j_A Hydin protein; PAPD, st 75.9 3 0.0001 37.6 5.0 56 650-706 26-82 (112)
65 3qbt_B Inositol polyphosphate 73.7 12 0.0004 35.5 8.8 55 651-706 44-102 (140)
66 2r39_A FIXG-related protein; s 66.9 19 0.00065 32.9 8.4 53 652-706 33-85 (118)
67 2qsv_A Uncharacterized protein 59.4 18 0.00063 36.8 7.5 65 652-724 21-85 (220)
68 3idu_A Uncharacterized protein 53.3 60 0.0021 30.1 9.2 52 649-704 32-84 (127)
69 2qsv_A Uncharacterized protein 41.4 72 0.0025 32.3 8.5 64 639-706 124-187 (220)
70 3zyz_A Beta-D-glucoside glucoh 39.8 69 0.0024 38.7 9.2 56 650-706 613-675 (713)
71 3qis_A Inositol polyphosphate 39.1 69 0.0024 35.3 8.5 56 650-706 46-105 (366)
72 2x41_A Beta-glucosidase; hydro 34.8 66 0.0022 38.9 8.0 70 634-706 596-678 (721)
73 3abz_A Beta-glucosidase I; gly 33.3 93 0.0032 38.3 9.0 71 634-705 716-798 (845)
74 1z9l_A Vesicle-associated memb 32.4 95 0.0032 28.5 7.0 53 650-705 27-79 (128)
75 2kq1_A BH0266 protein; solutio 32.1 12 0.00042 34.3 0.7 52 656-707 59-112 (119)
76 1w8o_A Bacterial sialidase; 3D 29.3 1.9E+02 0.0064 33.6 10.6 64 638-707 364-428 (601)
77 1msp_A MSP, major sperm protei 28.9 1.1E+02 0.0036 28.2 6.6 50 653-705 28-77 (126)
78 1wic_A Hypothetical protein ri 27.3 1.2E+02 0.0042 28.8 7.0 51 652-705 37-87 (152)
79 1row_A SSP-19, MSP-domain prot 27.1 1.7E+02 0.0058 26.2 7.5 49 654-705 19-67 (109)
80 1m1s_A WR4; structural genomic 26.3 1.5E+02 0.005 27.1 6.9 50 653-705 26-75 (116)
81 1wgl_A TOLL-interacting protei 24.7 46 0.0016 26.6 2.8 35 520-554 3-37 (59)
82 3isy_A Bsupi, intracellular pr 23.1 3.7E+02 0.013 24.5 9.0 54 649-703 17-87 (120)
83 2cri_A Vesicle-associated memb 22.0 1.2E+02 0.0043 28.5 5.8 51 652-705 33-83 (147)
No 1
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=100.00 E-value=2.3e-120 Score=1094.84 Aligned_cols=597 Identities=36% Similarity=0.596 Sum_probs=544.5
Q ss_pred ccccccccccccccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccc
Q 042478 114 TTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG 193 (954)
Q Consensus 114 t~~s~~~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiig 193 (954)
|+++|+|+||+. ...+|..+.+|+||+|||||||||++||+|.+.+++ |+|.+|+|.|+.+.+|+...||+|++|
T Consensus 1 Tt~s~~flgl~~---~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~--p~p~~wkg~c~~g~~f~~~~cN~kiig 75 (649)
T 3i6s_A 1 TTHTSDFLKLNP---SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMP--EIPKRWKGICKPGTQFNASMCNRKLIG 75 (649)
T ss_dssp CCSHHHHTTCCS---SSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCC--CCCTTCCCCBCCBTTBCTTSCCSSEEE
T ss_pred CCCChHHcCCCC---chhhHhccCCCCCCEEEEEccCCCCCChhhccCCCC--CCccccccccccCccccccccccceee
Confidence 689999999974 578999999999999999999999999999999999 999999999999999999999999999
Q ss_pred eeccccCCC--------------CCCCchhhhcccccccc--------------ceeccCCCcEEEEEEecCCCCChHHH
Q 042478 194 ARWFIKGIM--------------DMINASTNTDEGLAAGL--------------ARGGAPLAHLAIYKACWDIGCTDADV 245 (954)
Q Consensus 194 a~~~~~~~~--------------~~~G~GTa~v~G~a~G~--------------~~GvAP~A~L~~yKv~~~~g~~~~di 245 (954)
+++|.+++. +.+|||| |++|+++|. ++||||+|+|++||+|+..||..+++
T Consensus 76 ~~~f~~~~~~~~~~~~~~~~~~~D~~GHGT-hVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i 154 (649)
T 3i6s_A 76 ANYFNKGILANDPTVNITMNSARDTDGHGT-HCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDL 154 (649)
T ss_dssp EEECCHHHHHHCTTCCCTTCSSBCSSSHHH-HHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHH
T ss_pred eEeccCcccccccccccCCCCCCCCCCcHH-HHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHH
Confidence 999974321 2238999 999887754 58999999999999999888999999
Q ss_pred HHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCC
Q 042478 246 LKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDR 325 (954)
Q Consensus 246 l~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~ 325 (954)
++||+||+++|+||||||||+.. .+ +.. ++++.++++|+++||+||+||||+|+...++.+.+||+|+|||++.||
T Consensus 155 ~~Ai~~A~~~gvdVIn~SlG~~~-~~-~~~--~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr 230 (649)
T 3i6s_A 155 IAAMDQAVADGVDMISISYGYRF-IP-LYE--DAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDR 230 (649)
T ss_dssp HHHHHHHHHTTCSEEEECCCCCS-CC-GGG--CHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSC
T ss_pred HHHHHHHHHcCCCEEEeCCccCC-cc-cch--hHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeeccc
Confidence 99999999999999999999874 34 777 899999999999999999999999999999999999999999999999
Q ss_pred CccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccc--cceEEEEecCCCCchHHHHHH
Q 042478 326 AFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLA--AGKIILCFSRPDTQDIQSAAI 403 (954)
Q Consensus 326 ~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v--~Gkivl~~~~~g~~~~~~k~~ 403 (954)
.|+..+.++|++++.|.+++........||+++.. ....|.+..++..++ +||||+|+| |.|.+.+|..
T Consensus 231 ~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~-------~~~~C~~~~l~~~~vdl~GkIvlc~~--g~~~~~~k~~ 301 (649)
T 3i6s_A 231 TFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK-------TLSDCSSEELLSQVENPENTIVICDD--NGDFSDQMRI 301 (649)
T ss_dssp EEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT-------TTTTCCCHHHHTTSSSGGGCEEEECC--CSCHHHHHHH
T ss_pred ceeeEEEeCCCcEEeeeecccCcccCcceeeEecc-------cccccccccccccccccCCcEEEEeC--CCccHHHHHH
Confidence 99999999999999999998877666789999864 467899988888878 999999999 8999999999
Q ss_pred HHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCC
Q 042478 404 SVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMS 483 (954)
Q Consensus 404 ~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~ 483 (954)
+++++|+.|+|++|+......+.+.+|+++++.++|+.|++|++++.+++++|.+..+..+..+.+.++.||||||+...
T Consensus 302 ~~~~~Ga~g~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~ 381 (649)
T 3i6s_A 302 ITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSY 381 (649)
T ss_dssp HHHHTCSEEEEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTC
T ss_pred HHHhcCceEEEEecCccccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCC
Confidence 99999999999999884446778999999999999999999999999999999999999888899999999999999988
Q ss_pred CCCcCCeEEecCCceEecCCCCCCC--------CCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 042478 484 PAVLKPDIVAPGVDILSAYPPIGSK--------DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQ 555 (954)
Q Consensus 484 ~~~lKPDI~APG~~I~sa~~~~~~~--------~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~ 555 (954)
+++|||||+|||++|+++|+..... ....|..+||||||||||||++|||||+||+|||++||++||+||++
T Consensus 382 ~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~ 461 (649)
T 3i6s_A 382 LGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADP 461 (649)
T ss_dssp TTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBC
T ss_pred CCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhccccc
Confidence 8999999999999999999874321 12689999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhHHHhhhcCCCCcccceeccccccc--ccCCCcCc
Q 042478 556 TGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKIN--CLKNNHLA 633 (954)
Q Consensus 556 ~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy~~flc~~g~~~~~i~~~~~~~~~--c~~~~~~~ 633 (954)
+++.+.|+.++. ....+++++||+|+|||.+|++||||||++++||++|||++||+..+|+.|+++++. |+. ..
T Consensus 462 ~~~~g~~i~~~~-~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~---~~ 537 (649)
T 3i6s_A 462 LDNTRKPIKDSD-NNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN---PS 537 (649)
T ss_dssp BCTTSSBCEETT-TSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC---CC
T ss_pred ccCCCCcccccc-cCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC---ch
Confidence 999999998862 567889999999999999999999999999999999999999999999999998878 975 46
Q ss_pred cCCCCCeeeccc-CCCCce-----EEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCc
Q 042478 634 LDLNLPSITIPN-LHNNET-----VTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHK 707 (954)
Q Consensus 634 ~~lN~psi~~~~-~~~~~~-----~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~ 707 (954)
.|||||||++.+ + .++ ++|+|||||||+..++|+++|++|+|++|+|+|.+|+|.+.+|+++|+|||+....
T Consensus 538 ~~lNyPs~~~~~~~--~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~ 615 (649)
T 3i6s_A 538 ADLNYPSFIALYSI--EGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGD 615 (649)
T ss_dssp CCCCCSSEEEEECC--SSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC
T ss_pred hhcCCCcEEeeccc--CCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEeccc
Confidence 799999999987 5 444 89999999999999999999999999999999999999989999999999998753
Q ss_pred cCCCCCCCceEEEEEEEC--CcceEEcCcccccc
Q 042478 708 VHPVPDAEYRFGSLTWTD--DSVDSRFNGFLSIH 739 (954)
Q Consensus 708 ~~~~~~~~~~~G~l~w~~--~~~~vr~P~~v~~~ 739 (954)
..++|.||+|+|+| ++|.||+||+|.+.
T Consensus 616 ----~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 616 ----EGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp -------CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred ----CCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 45679999999999 89999999999775
No 2
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=100.00 E-value=2.3e-109 Score=1001.41 Aligned_cols=586 Identities=39% Similarity=0.675 Sum_probs=489.6
Q ss_pred ccccccccccccccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccc
Q 042478 114 TTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG 193 (954)
Q Consensus 114 t~~s~~~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiig 193 (954)
||++|+|+||+. .+|.++.+|+||+|||||||||++||+|+|++++ ++|.+|+|.|+.+.+|. ||+|++|
T Consensus 1 tt~s~~flGl~~-----~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~--~~~~~w~g~~~~~~~~~---~n~k~ig 70 (621)
T 3vta_A 1 TTRSWDFLGFPL-----TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFS--PPPPKWKGTCETSNNFR---CNRKIIG 70 (621)
T ss_dssp CCSHHHHTTCCT-----TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCC--CCCTTCCCCBCCSSSCC---CCSSEEE
T ss_pred CCCChhHcCCCc-----cccccCCCCCCCEEEEEecCCCCCChhhcCCCCC--CcccccccccccCCCcc---cCcceee
Confidence 689999999964 6899999999999999999999999999999999 99999999999988774 9999999
Q ss_pred eeccccCCCC----------CCCchhhhcccccccc--------------ceeccCCCcEEEEEEecCCCCChHHHHHHH
Q 042478 194 ARWFIKGIMD----------MINASTNTDEGLAAGL--------------ARGGAPLAHLAIYKACWDIGCTDADVLKAF 249 (954)
Q Consensus 194 a~~~~~~~~~----------~~G~GTa~v~G~a~G~--------------~~GvAP~A~L~~yKv~~~~g~~~~dil~Ai 249 (954)
+++|..++.. .+|||| |++|+++|. ++||||+|+|++||||++.||..+++++||
T Consensus 71 ~~~~~~~~~~~~~~~~~p~D~~GHGT-HvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~ 149 (621)
T 3vta_A 71 ARSYHIGRPISPGDVNGPRDTNGHGT-HTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAY 149 (621)
T ss_dssp EEECCCSSSCCTTCCSSSBCSSSHHH-HHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHH
T ss_pred eeecccCCccCCCCCCCCCCCCcCHH-HHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHH
Confidence 9999765432 128999 999988763 589999999999999999999999999999
Q ss_pred HHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccc
Q 042478 250 DKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPT 329 (954)
Q Consensus 250 d~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~ 329 (954)
|||+++|+||||||||+..+.. ++. +++++++++|+++||+||+||||+|+...++++.+||+++|+|++.||.|..
T Consensus 150 ~~a~~~g~dVin~SlG~~~~~~-~~~--~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~ 226 (621)
T 3vta_A 150 DDAIADGVDIISLSVGGANPRH-YFV--DAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226 (621)
T ss_dssp HHHHHHTCSEEEECCCCCCGGG-GGG--CTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEE
T ss_pred HHHHHhCCCEEEecCCCCCCCC-cCC--cHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeecccccee
Confidence 9999999999999999876333 555 8999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCeEEeeeeeeccCcCCceeeeeeccccc---cCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHH
Q 042478 330 AITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIA---FDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVT 406 (954)
Q Consensus 330 ~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~---~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~ 406 (954)
.+.++++..+.+.++... ....++++...... ........|.+..+++.+++|||++|++ + +..+..+..
T Consensus 227 ~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~--~---~~~~~~~~~ 299 (621)
T 3vta_A 227 QVQIGNGQSFQGVSINTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEA--S---FGPHEFFKS 299 (621)
T ss_dssp EEEETTSCEEEEBCCCCS--CCEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSS--C---CCHHHHHHH
T ss_pred eEEeccCceeeeeecccC--CCcccccccccccccccccccccccccccccccccccceEEEEec--C---CChhHHhhh
Confidence 999999999988887643 34466777554322 2233456799999999999999999987 3 235666778
Q ss_pred HcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCC
Q 042478 407 QAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAV 486 (954)
Q Consensus 407 ~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~ 486 (954)
.+|+.++|++++..+ ..+.+.+|..+++..++..++.|+..+..+.+.+....+.. ....+.++.||||||+...+++
T Consensus 300 ~~Ga~gvi~~~~~~~-~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~-~~~~~~va~FSSrGP~~~~~~i 377 (621)
T 3vta_A 300 LDGAAGVLMTSNTRD-YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL-NASAPVVVSFSSRGPNRATKDV 377 (621)
T ss_dssp HTTCSEEEEECSCCS-SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEE-CTTCCCBCTTSCCCSCTTCTTS
T ss_pred hcceeEEEEEecCCC-cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEec-cCCCCceeeecCCCCCCCCCCe
Confidence 899999999987654 34567899999999999999999999998888886665544 5678999999999999888999
Q ss_pred cCCeEEecCCceEecCCCCCCC----CCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcc
Q 042478 487 LKPDIVAPGVDILSAYPPIGSK----DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMN 562 (954)
Q Consensus 487 lKPDI~APG~~I~sa~~~~~~~----~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~p 562 (954)
+||||+|||++|+|+|+..... ....|..|||||||||||||++|||||+||+|+|++||++||+||++++..+
T Consensus 378 lKPDI~APG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~-- 455 (621)
T 3vta_A 378 IKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF-- 455 (621)
T ss_dssp CSCCEEEECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTT--
T ss_pred eccccccCCcceEeecCccccccCcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccC--
Confidence 9999999999999999864321 2467999999999999999999999999999999999999999999876544
Q ss_pred ccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhHHHhhhcCCCCcccceecccccccccCC-CcCccCCCCCee
Q 042478 563 IFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKN-NHLALDLNLPSI 641 (954)
Q Consensus 563 i~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy~~flc~~g~~~~~i~~~~~~~~~c~~~-~~~~~~lN~psi 641 (954)
.++.+|+||+|+|||.+|++||||||++.+||+.|||++||+..+++.+++....|+.. .....|||||||
T Consensus 456 --------~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~ 527 (621)
T 3vta_A 456 --------NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSF 527 (621)
T ss_dssp --------CTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSSE
T ss_pred --------CCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccccccE
Confidence 35668999999999999999999999999999999999999999999999998889653 345789999999
Q ss_pred ecccCC-CCceEEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCCCceEEE
Q 042478 642 TIPNLH-NNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGS 720 (954)
Q Consensus 642 ~~~~~~-~~~~~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~G~ 720 (954)
++.... ...+++|+|||||||+...+|++++++|+|++|+|+|.+|+|.+.+|+++|+|||+.. ..+.|+||+
T Consensus 528 ~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~------~~~~~~~g~ 601 (621)
T 3vta_A 528 GLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS------IKGFVVSAS 601 (621)
T ss_dssp EEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC------CCSSEEEEE
T ss_pred EEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec------CCCceEEEE
Confidence 985431 1578999999999999999999999999999999999999999899999999999864 456799999
Q ss_pred EEEECCcceEEcCccccc
Q 042478 721 LTWTDDSVDSRFNGFLSI 738 (954)
Q Consensus 721 l~w~~~~~~vr~P~~v~~ 738 (954)
|+|+|++|+||+||+|+.
T Consensus 602 l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 602 LVWSDGVHYVRSPITITS 619 (621)
T ss_dssp EEEECSSCCCEEEEEEEC
T ss_pred EEEEcCCEEEEeCEEEEE
Confidence 999999999999999864
No 3
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=100.00 E-value=3.2e-80 Score=776.13 Aligned_cols=527 Identities=22% Similarity=0.294 Sum_probs=418.7
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCC----------CCCCCCccccceeccc
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKF----------NSSNCNRKLIGARWFI 198 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f----------~~~~cn~kiiga~~~~ 198 (954)
+..+|..+.+|+||+|||||||||++||+|.+ +..|++.|.....| .+.+||+|++++++|.
T Consensus 6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~--------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~ 77 (926)
T 1xf1_A 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRL--------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYS 77 (926)
T ss_dssp CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSC--------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESC
T ss_pred cHHHHhccCCCCCcEEEEEecCCCCCCHhHcC--------CCCCcccccchhhhcccccccCcccccccCcccceeeccc
Confidence 56799999999999999999999999999973 34566666543222 3458999999999998
Q ss_pred cCCCCCC--Cchhhhccccccc----------cceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecc
Q 042478 199 KGIMDMI--NASTNTDEGLAAG----------LARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSI 264 (954)
Q Consensus 199 ~~~~~~~--G~GTa~v~G~a~G----------~~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSl 264 (954)
++....| |||| |++|+++| .+.||||+|+|++||+|+..+ |..+++++||+||+++|+|||||||
T Consensus 78 ~~~~~~D~~gHGT-hVAgiiAg~~~~~~~~~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~gvdVIn~Sl 156 (926)
T 1xf1_A 78 KDGKTAVDQEHGT-HVSGILSGNAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSF 156 (926)
T ss_dssp CCSCCCCSSTTTT-HHHHSSCCCCCCCCSCSCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCCCCCCCCCcHH-HHHHHHhCCCccCcccCCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhCCcEEEECC
Confidence 7654333 8999 99998876 358999999999999998776 5678899999999999999999999
Q ss_pred cCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCC-------------CCcccc--CCCceEEEcccccCCCccc
Q 042478 265 GNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPV-------------AQTIVN--TAPWIITVGATTIDRAFPT 329 (954)
Q Consensus 265 G~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~-------------~~t~~~--~ap~vitVgAs~~d~~~~~ 329 (954)
|+......... ++++.++++|+++||+||+||||+|+. ..++.+ .+||+|+|||++.++.+..
T Consensus 157 G~~~~~~~~~~--~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~~~~~~~~ 234 (926)
T 1xf1_A 157 GNAALAYANLP--DETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTE 234 (926)
T ss_dssp SSCCCTTCCCC--HHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEBCSEEEEE
T ss_pred CCCCCCccccc--cHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEecccccccccc
Confidence 98642110334 788999999999999999999999963 233444 4899999999999999888
Q ss_pred eeec-CCCeEEeeeeeeccC--cCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHH
Q 042478 330 AITL-GNHQVLWGQSIDIGK--VSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVT 406 (954)
Q Consensus 330 ~~~l-g~~~~~~g~s~~~~~--~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~ 406 (954)
.+.+ +++....+.++.... .....||+++... .|.+..+ .+++||||+|+| |.|.+.+|..+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~---------g~~~~~~--~~v~Gkivl~~r--g~~~~~~k~~~~~ 301 (926)
T 1xf1_A 235 TVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR---------GTKEDDF--KDVKGKIALIER--GDIDFKDKIAKAK 301 (926)
T ss_dssp EEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT---------SCSTTTT--TTCTTSEEEEEC--CSSCHHHHHHHHH
T ss_pred ceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC---------CCCccch--hhcCCeEEEEEC--CCCCHHHHHHHHH
Confidence 8877 565555555544322 2356889987632 4776666 689999999999 8999999999999
Q ss_pred HcCceEEEEEecCCCC----CCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCC
Q 042478 407 QAGGVGLIYAQFHTDG----LDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSM 482 (954)
Q Consensus 407 ~aGa~gvi~~n~~~~~----~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~ 482 (954)
++||.|+|++|+.... ......+|+.+++.++++.|.+ ....+.++............+.++.||||||+.
T Consensus 302 ~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~~~~~~~a~FSSrGp~~- 376 (926)
T 1xf1_A 302 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPTASGTKLSRFSSWGLTA- 376 (926)
T ss_dssp HTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEECSSCSBCCTTSCCCBCT-
T ss_pred hCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceecccCCcceeccccCCCCCC-
Confidence 9999999999987543 3456789999999999998874 333333333333334556688999999999996
Q ss_pred CCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHH----hhCCCCCHHH----HHHHHHhccc
Q 042478 483 SPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIK----SLHRDWSPAA----IRSALVTTAS 554 (954)
Q Consensus 483 ~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~----q~~P~~sp~~----Iks~L~~TA~ 554 (954)
++++||||+|||++|+++|++ +.|..+||||||||||||++|||+ +.||+|+|+| ||++||+||+
T Consensus 377 -~~~lKPDI~APG~~I~sa~~~------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~ 449 (926)
T 1xf1_A 377 -DGNIKPDIAAPGQDILSSVAN------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSAT 449 (926)
T ss_dssp -TSCBSCCEEEECCCEEESSSC------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSB
T ss_pred -CCccCceEECCCCCEEeeccC------CcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 899999999999999999987 689999999999999999999995 5699999997 9999999999
Q ss_pred cCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhHHHhhhcCCCCcccceecccccccccCCCcCcc
Q 042478 555 QTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLAL 634 (954)
Q Consensus 555 ~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy~~flc~~g~~~~~i~~~~~~~~~c~~~~~~~~ 634 (954)
+++..+ ....+++++||+|+||+.+|++|.+ |||..+++..
T Consensus 450 ~~~~~~--------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~-------------------- 490 (926)
T 1xf1_A 450 ALYDED--------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS-------------------- 490 (926)
T ss_dssp CCEEGG--------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS--------------------
T ss_pred CcccCC--------CCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc--------------------
Confidence 765332 1235678999999999999999854 6787764332
Q ss_pred CCCCCeeecccCCCCceEEEEEEEEecCCC--CceeEEEEEc--CCCceEEEEcCEEEEecC-------CeEEEEEEEEE
Q 042478 635 DLNLPSITIPNLHNNETVTVTRKVTNVGQI--NSAYEALVEA--PYGVNMTVEPEVISFNMT-------IKILSFRVTFF 703 (954)
Q Consensus 635 ~lN~psi~~~~~~~~~~~tv~rtvtNvg~~--~~tY~~~v~~--p~g~~v~v~P~~l~f~~~-------g~~~~~~Vt~~ 703 (954)
+|.+.++ ..+++++|||||+|+. ..+|++++.. |+|..++|+|..|.|..+ ||+++|+|||+
T Consensus 491 -----~i~l~~~--~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~ 563 (926)
T 1xf1_A 491 -----KVHLNNV--SDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPID 563 (926)
T ss_dssp -----CEEEEEE--CSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEE
T ss_pred -----eeecccc--CccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEE
Confidence 3444555 4578899999999985 4678888765 778999999998877644 99999999999
Q ss_pred eCC---ccC-CCCCCCceEEEEEEE--CCcce-EEcCcccc
Q 042478 704 SNH---KVH-PVPDAEYRFGSLTWT--DDSVD-SRFNGFLS 737 (954)
Q Consensus 704 ~~~---~~~-~~~~~~~~~G~l~w~--~~~~~-vr~P~~v~ 737 (954)
+.. ... ..+.+.|+||+|+|+ ++.|. ||+||++.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~ 604 (926)
T 1xf1_A 564 ASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGF 604 (926)
T ss_dssp CHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred cCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEE
Confidence 752 000 013456899999999 56665 99999984
No 4
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=5e-59 Score=467.77 Aligned_cols=198 Identities=77% Similarity=1.152 Sum_probs=141.0
Q ss_pred ceeeeccccccccccCCCcccccccCcccc-cCCCCCCCCccceeeecCCCCCCccccccceeEEEEEEEecCcCCCCCC
Q 042478 748 QQLSCSLFPSAVNLSSNSNVSLPFYDNKVK-PSPLLSSTPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPP 826 (954)
Q Consensus 748 ~~~s~~~~~~~~~ls~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~ 826 (954)
+++|+++ +.+||++.+++++|+..++. ++| ++.+|++++++|. ||+. ++|+++++|||+|+||+|+|+||
T Consensus 24 ~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~p--~~~~~~~~~~~M~-pk~~---~akkv~~~IkL~v~aGkA~PaPP 94 (224)
T 3bbo_K 24 SSLLTPS---SLSLSSNPRNSLQFLNSKLFLSPP--STSHRRLSIVAMA-PKPG---KAKKVIGVIKLALEAGKATPAPP 94 (224)
T ss_dssp ------------------------------------------------C-CSCC---CCCCCSSEEEECCBTTBCCCSTT
T ss_pred hhhhhhh---hhccccCCCcceeecccccccCCC--CCCCcccceeccC-CCCC---CccceEEEEEEEEecCcccCCCC
Confidence 4667766 78899999999999998743 444 7779999999985 5763 45789999999999999999999
Q ss_pred CCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhCCCCCCCCCCCceeEeecHH
Q 042478 827 VGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIE 906 (954)
Q Consensus 827 ~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~ 906 (954)
|||+|||+|||||+||||||++|++|+|++|||+||||+||+|+|++++||+|+||+||||+++|+++|+++++|+||++
T Consensus 95 lGPaLG~~GVNim~FcK~fN~~T~d~~Gl~IPV~ITV~~DRsf~f~vktPpaS~LLkKAagi~kGs~kp~~~~vG~IT~~ 174 (224)
T 3bbo_K 95 VGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITID 174 (224)
T ss_dssp TTTTTTTTSSCTTSSHHHHHHHGGGSCSSBCCEEEEECSSSCEEEEECCCCTTHHHHHHHTCSSCCSSTTTSCCEEECHH
T ss_pred ccccccccCCCHHHHHHHHHHHhcccCCCeEEEEEEEccCCeEEEEecCCCHHHHHHHHhCCCCCCCCCCCceeeeecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478 907 QLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL 954 (954)
Q Consensus 907 ~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~ 954 (954)
||+|||++|++|+++++|+++||+|+||||||||+||++.|++|+|++
T Consensus 175 qV~eIAk~K~~dl~a~~Le~avK~IlGTArSMGi~V~g~~p~~~~~~~ 222 (224)
T 3bbo_K 175 QLRGIATEKLPDLNCTTIESAMRIIAGTAANMGIDIDPPILVKKKKEV 222 (224)
T ss_dssp HHHHHHHHTCTTSCCSSHHHHHHHHHHHHTTTTEEEC-----------
T ss_pred HHHHHHHHHHhhhcCcCHHHHHHHHHHHHHhCeeEEeCCCCChhhccc
Confidence 999999999999999999999999999999999999999999999974
No 5
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=100.00 E-value=1.9e-55 Score=521.78 Aligned_cols=352 Identities=31% Similarity=0.407 Sum_probs=276.2
Q ss_pred CCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHH-----------HcC
Q 042478 30 ATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKI-----------AEL 98 (954)
Q Consensus 30 ~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L-----------~~~ 98 (954)
.+...|||.|++.. ..+...++++. .+.++.|+|+ .|+||+++++++++++| +++
T Consensus 33 ~~~~~~iV~~~~~~------~~~~~~~~~~~-------~g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~ 98 (539)
T 3afg_A 33 DQEVSTIIMFDNQA------DKEKAVEILDF-------LGAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQL 98 (539)
T ss_dssp TCEEEEEEEESSHH------HHHHHHHHHHH-------HTCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCC
T ss_pred cCceEEEEEECCCC------CHHHHHHHHHh-------cCCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccC
Confidence 34557999998742 11222233332 2357999997 79999999999999999 899
Q ss_pred CCeeEEEeCceeecccccccccccccc---ccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccc
Q 042478 99 PGVVQVIPNGILKLHTTRSWEFMGLHY---YQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGI 175 (954)
Q Consensus 99 p~V~~V~~~~~~~l~t~~s~~~~gl~~---~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~ 175 (954)
|+|++|++++.+++.... .+++. ..++..+|..+.+|+||+|||||||||++||+|.++
T Consensus 99 ~~V~~v~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~~-------------- 160 (539)
T 3afg_A 99 SGVQFIQEDYVVKVAVET----EGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQGK-------------- 160 (539)
T ss_dssp TTEEEEEECCEEECC---------------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTTT--------------
T ss_pred CCeeEEEecccccccCcc----ccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhCC--------------
Confidence 999999999998875321 11110 003567899999999999999999999999999643
Q ss_pred cccCCCCCCCCCCccccceeccccCC---CCCCCchhhhcccccccc-------ceeccCCCcEEEEEEecCCC-CChHH
Q 042478 176 CQKGEKFNSSNCNRKLIGARWFIKGI---MDMINASTNTDEGLAAGL-------ARGGAPLAHLAIYKACWDIG-CTDAD 244 (954)
Q Consensus 176 ~~~~~~f~~~~cn~kiiga~~~~~~~---~~~~G~GTa~v~G~a~G~-------~~GvAP~A~L~~yKv~~~~g-~~~~d 244 (954)
+++.++|..+. .+.+|||| |++|+++|. +.||||+|+|++||++++.| ++.++
T Consensus 161 ---------------i~~~~d~~~~~~~~~D~~gHGT-hVAgiiag~~~~~~g~~~GvAp~A~l~~~kv~~~~g~~~~~~ 224 (539)
T 3afg_A 161 ---------------VIGWVDFVNGKTTPYDDNGHGT-HVASIAAGTGAASNGKYKGMAPGAKLVGIKVLNGQGSGSISD 224 (539)
T ss_dssp ---------------EEEEEETTTCCSSCCBSSSHHH-HHHHHHHCCCGGGTTTTCCSCTTCEEEEEECSCTTSEEEHHH
T ss_pred ---------------EeeeEECCCCCCCCCCCCCCHH-HHHHHHhCcCccCCCCEEEECCCCEEEEEEeecCCCCcCHHH
Confidence 12222222221 11238999 999987653 68999999999999998876 78899
Q ss_pred HHHHHHHHhcC----CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCc--cccCCCceEEE
Q 042478 245 VLKAFDKAIHD----GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQT--IVNTAPWIITV 318 (954)
Q Consensus 245 il~Aid~Ai~d----gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t--~~~~ap~vitV 318 (954)
+++||+||+++ |++|||||||.... . ... +++..++++|.++|++||+||||+|+...+ .++..+++|+|
T Consensus 225 i~~ai~~a~~~~~~~g~~Vin~SlG~~~~-~-~~~--~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitV 300 (539)
T 3afg_A 225 IINGVDWAVQNKDKYGIKVINLSLGSSQS-S-DGT--DSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITV 300 (539)
T ss_dssp HHHHHHHHHHTHHHHTEEEEEECCCCCSC-C-CSC--SHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEE
T ss_pred HHHHHHHHHhhhhhcCCcEEEeCCCCCCC-C-ccc--hHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEE
Confidence 99999999986 99999999998752 2 334 789999999999999999999999986544 45678999999
Q ss_pred cccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchH
Q 042478 319 GATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDI 398 (954)
Q Consensus 319 gAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~ 398 (954)
||++.
T Consensus 301 gA~~~--------------------------------------------------------------------------- 305 (539)
T 3afg_A 301 GAVDK--------------------------------------------------------------------------- 305 (539)
T ss_dssp EEECT---------------------------------------------------------------------------
T ss_pred eeecC---------------------------------------------------------------------------
Confidence 98431
Q ss_pred HHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCC
Q 042478 399 QSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRG 478 (954)
Q Consensus 399 ~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~G 478 (954)
.+.+++|||||
T Consensus 306 ---------------------------------------------------------------------~~~~a~fSs~G 316 (539)
T 3afg_A 306 ---------------------------------------------------------------------YDVITDFSSRG 316 (539)
T ss_dssp ---------------------------------------------------------------------TSCBCSSSCCC
T ss_pred ---------------------------------------------------------------------CcccccccCCC
Confidence 13468999999
Q ss_pred CCCCCCCCcCCeEEecCCceEecCCCCCCC---CCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 042478 479 PNSMSPAVLKPDIVAPGVDILSAYPPIGSK---DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQ 555 (954)
Q Consensus 479 P~~~~~~~lKPDI~APG~~I~sa~~~~~~~---~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~ 555 (954)
|+. ++++||||+|||++|+++++..... ....|..++|||||||||||++|||+|+||+|+|++||++|++||++
T Consensus 317 p~~--~~~~kpdi~APG~~I~s~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~ 394 (539)
T 3afg_A 317 PTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADI 394 (539)
T ss_dssp CCT--TCBCCCSEEEECSSEEEECCTTCCCSEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBC
T ss_pred CCC--CCCCcccEecCcCCEEeeccCCCCCCCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcc
Confidence 997 7899999999999999999653211 12369999999999999999999999999999999999999999997
Q ss_pred CCCCCccccccCCCCCCCCCCCCCCCccCcccccCC
Q 042478 556 TGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNP 591 (954)
Q Consensus 556 ~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~p 591 (954)
++..+ .+++.||+|+||+.+|++.
T Consensus 395 ~~~~~------------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 395 VKPDE------------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp SSGGG------------CSBTTTBTCBCCHHHHHTG
T ss_pred CCCCC------------CCccCccCCccCHHHHhhh
Confidence 64221 2467899999999999984
No 6
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A
Probab=100.00 E-value=2.9e-53 Score=486.96 Aligned_cols=339 Identities=27% Similarity=0.361 Sum_probs=268.7
Q ss_pred CceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCceee
Q 042478 32 SNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILK 111 (954)
Q Consensus 32 ~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~~~ 111 (954)
+..|||.|++... ..++++ ..+.+++++|. .|++|+++++++++++|+++|+|++|++++.++
T Consensus 2 ~~~~iV~~~~~~~---------~~~~~~-------~~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~ 64 (395)
T 2z2z_A 2 TIRVIVSVDKAKF---------NPHEVL-------GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 64 (395)
T ss_dssp EEEEEEEECTTTC---------CHHHHH-------HTTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEE
T ss_pred cEEEEEEECCCcc---------HHHHHH-------HcCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeec
Confidence 4689999998521 112222 23467999998 599999999999999999999999999999998
Q ss_pred cccccccc-----------ccccccccCccccccCCCCCCc--eEEEEEeCCCCCCCCCcCCCCCCCCCCCCCccccccc
Q 042478 112 LHTTRSWE-----------FMGLHYYQSSKNLSTESNMGEG--TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQK 178 (954)
Q Consensus 112 l~t~~s~~-----------~~gl~~~~~~~~~w~~~~~G~G--VvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~ 178 (954)
++....+. .+++... +...+|..+ +|+| |+|||||||||++||+|.++... +
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~w~~~~i-~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~~~~---------~---- 129 (395)
T 2z2z_A 65 LLGKPSWLGGGSTQPAQTIPWGIERV-KAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAANIAW---------C---- 129 (395)
T ss_dssp ECCEECC------CCSCCCCHHHHHT-TCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGGEEE---------E----
T ss_pred ccCCCCcccccccCccccCCcchhhc-CHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhcccc---------C----
Confidence 75432211 1222211 356789988 9999 99999999999999999753211 0
Q ss_pred CCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHH
Q 042478 179 GEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKA 252 (954)
Q Consensus 179 ~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~A 252 (954)
.+|. ++++ +... .+..+.+|||| |++|+++|. +.||||+|+|+.+|++++.| ++.+++++||+||
T Consensus 130 -~~~~----~~~~-~~~~--~~~~d~~gHGT-~vAgiia~~~n~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a 200 (395)
T 2z2z_A 130 -VSTL----RGKV-STKL--RDCADQNGHGT-HVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQA 200 (395)
T ss_dssp -EECG----GGCC-BCCH--HHHBCSSSHHH-HHHHHHHCCCSSSSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHH
T ss_pred -cccc----CCcc-cCCC--CCCCCCCCCHH-HHHHHHHeecCCCceEEECCCCEEEEEEEecCCCCccHHHHHHHHHHH
Confidence 0110 0000 0000 00122338999 999987764 58999999999999998876 7889999999999
Q ss_pred hcC--------------------CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCC
Q 042478 253 IHD--------------------GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTA 312 (954)
Q Consensus 253 i~d--------------------gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~a 312 (954)
+++ +++|||||||+.. . . ..+..++.+|.++|++||+||||+|.....+++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~----~-~--~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~ 273 (395)
T 2z2z_A 201 ILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA----D-D--SYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAY 273 (395)
T ss_dssp HHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC----C-C--HHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTS
T ss_pred HhCccccccccccccccccccCCCCeEEEecCCCCC----C-C--HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCC
Confidence 988 9999999999874 1 2 56788889999999999999999998877888889
Q ss_pred CceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecC
Q 042478 313 PWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSR 392 (954)
Q Consensus 313 p~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~ 392 (954)
|++|+|||++.
T Consensus 274 ~~vi~Vga~~~--------------------------------------------------------------------- 284 (395)
T 2z2z_A 274 PEVIAVGAIDS--------------------------------------------------------------------- 284 (395)
T ss_dssp TTEEEEEEECT---------------------------------------------------------------------
T ss_pred CCEEEEEEecC---------------------------------------------------------------------
Confidence 99999998531
Q ss_pred CCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCccc
Q 042478 393 PDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVA 472 (954)
Q Consensus 393 ~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a 472 (954)
.+.++
T Consensus 285 ---------------------------------------------------------------------------~~~~a 289 (395)
T 2z2z_A 285 ---------------------------------------------------------------------------NDNIA 289 (395)
T ss_dssp ---------------------------------------------------------------------------TSCBC
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 13468
Q ss_pred ccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCC-------------C
Q 042478 473 SFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHR-------------D 539 (954)
Q Consensus 473 ~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P-------------~ 539 (954)
.||+||| +|+|||++|+++++. +.|..++|||||||||||++|||+|++| .
T Consensus 290 ~fS~~G~----------~v~APG~~i~s~~~~------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ 353 (395)
T 2z2z_A 290 SFSNRQP----------EVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDD 353 (395)
T ss_dssp TTSCSSC----------SEEEECSSEEEEETT------TEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTC
T ss_pred cccCCCC----------CEEeCCCCeeeecCC------CceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccC
Confidence 9999997 679999999999987 7899999999999999999999999999 9
Q ss_pred CCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCC
Q 042478 540 WSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNP 591 (954)
Q Consensus 540 ~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~p 591 (954)
|++.+||++|++||++++..+ .++.||+|+||+.+|++.
T Consensus 354 ls~~~v~~~L~~tA~~~~~~g-------------~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 354 ISKNTVRGILHITADDLGPTG-------------WDADYGYGVVRAALAVQA 392 (395)
T ss_dssp CSSSSHHHHHHHHSBCCSSSS-------------SBTTTBTCBCCHHHHHHH
T ss_pred CCHHHHHHHHHhhccccCCCC-------------CCCCccCceeCHHHHHHH
Confidence 999999999999999764322 356899999999999873
No 7
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=100.00 E-value=1.3e-52 Score=400.14 Aligned_cols=139 Identities=66% Similarity=1.037 Sum_probs=132.5
Q ss_pred cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHH
Q 042478 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKA 885 (954)
Q Consensus 806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~ 885 (954)
|++.++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||||+||+|+|++++||+|+||+||
T Consensus 2 k~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T~~~~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ka 81 (140)
T 1mms_A 2 KKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKA 81 (140)
T ss_dssp -----CEEEEEETTCCCCTTTTTHHHHTTTCCHHHHHHHHHHHTTTSCSSEEEEEEEECTTSCEEEEECCCCHHHHHHHH
T ss_pred CceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHhhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcC
Q 042478 886 AGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDP 944 (954)
Q Consensus 886 ~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~ 944 (954)
+|+++||++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+|++
T Consensus 82 ~g~~~gs~~p~k~~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g 140 (140)
T 1mms_A 82 AGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD 140 (140)
T ss_dssp HTCSSCCSSTTTSCCEEECHHHHHHHHHHHGGGCCCSSHHHHHHHHHHHHTTTTEEEC-
T ss_pred hCCCCCCCCCCCeEeeeEcHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHcCeeEeeC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 8
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=100.00 E-value=2e-51 Score=482.96 Aligned_cols=359 Identities=22% Similarity=0.265 Sum_probs=269.7
Q ss_pred CCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHc-CCCeeEEEeCc
Q 042478 30 ATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAE-LPGVVQVIPNG 108 (954)
Q Consensus 30 ~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~-~p~V~~V~~~~ 108 (954)
.+.+.|||.+++. ..-.++++ +.+.+++++|. .|++|+++++++++++|++ +|+|++|++++
T Consensus 42 ~~~~~yiv~~~~~---------~~~~~~~~-------~~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~ 104 (471)
T 3t41_A 42 SEELYYSVEYKNT---------ATFNKLVK-------KKSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATC 104 (471)
T ss_dssp -CCEEEEEEESCH---------HHHHHHHH-------HHTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECC
T ss_pred CCceEEEEEcCCH---------HHHHHHHH-------hCCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecc
Confidence 3456899977652 11222222 23457889996 6999999999999999999 99999999999
Q ss_pred eeeccccc-------------cccccccccccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccc
Q 042478 109 ILKLHTTR-------------SWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGI 175 (954)
Q Consensus 109 ~~~l~t~~-------------s~~~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~ 175 (954)
.++++.+. .|.+..+.. ...+|..+.+|+||+|||||||||++||+|.+.... .++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~---~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~~~------~~~~- 174 (471)
T 3t41_A 105 STCITSEKTIDRTSNESLFSRQWDMNKITN---NGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFST------DSKN- 174 (471)
T ss_dssp SSCBCCCCCCCC---CCSCCCCHHHHTTTT---TTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTBCT------TCEE-
T ss_pred eeccccccccccCCCCccccccccHhhccC---cHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCccc------CCcc-
Confidence 88875432 243333321 346899999999999999999999999999864322 0000
Q ss_pred cccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccc--ccceeccCCCcEEEEEEecCCCCChHHHHHHHHHHh
Q 042478 176 CQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAA--GLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI 253 (954)
Q Consensus 176 ~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~--G~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai 253 (954)
...+..|...... ..+. .....+.+|||| |++|+++ |...||||+|+|+.||++++.++..+++++||+||+
T Consensus 175 ~~~~~~~~~~~~~--~~~~---~~~~~d~~gHGT-~vAgiiaa~g~~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~ 248 (471)
T 3t41_A 175 LVPLNGFRGTEPE--ETGD---VHDVNDRKGHGT-MVSGQTSANGKLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAA 248 (471)
T ss_dssp CCCTTCGGGCCTT--CCCC---TTCCCCSSSHHH-HHHHHHHCBSSSBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHH
T ss_pred cccCCCccCCCcc--cCCC---CCCCcCCCCccc-hhhheeecCCceeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHH
Confidence 0000011100000 0000 001112238999 9999877 668999999999999999886789999999999999
Q ss_pred cCCccEEEecccCCCCCC-----Ccc----CcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCc-----------------
Q 042478 254 HDGVDVLSVSIGNEIPLF-----SYI----DQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQT----------------- 307 (954)
Q Consensus 254 ~dgvdVINlSlG~~~~~~-----~~~----~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t----------------- 307 (954)
++|++|||||||.....+ ... ...+.+..++..|.++|++||+||||+|.+...
T Consensus 249 ~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~ 328 (471)
T 3t41_A 249 NDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVK 328 (471)
T ss_dssp HTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEE
T ss_pred hCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCcee
Confidence 999999999999842100 010 112567888899999999999999999976432
Q ss_pred -cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceE
Q 042478 308 -IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKI 386 (954)
Q Consensus 308 -~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gki 386 (954)
.++..|++|+|||++.
T Consensus 329 ~~Pa~~~~vitVgA~~~--------------------------------------------------------------- 345 (471)
T 3t41_A 329 DVPASMDNVVTVGSTDQ--------------------------------------------------------------- 345 (471)
T ss_dssp EETTTSTTEEEEEEECT---------------------------------------------------------------
T ss_pred eccccCCCeEEEEeeCC---------------------------------------------------------------
Confidence 5567788999987532
Q ss_pred EEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeeccc
Q 042478 387 ILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDL 466 (954)
Q Consensus 387 vl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~ 466 (954)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCCCCCCCCCCCCcCCeEEecCCc----------------------eEecCCCCCCCCCCceEeecCCCchhH
Q 042478 467 VSPRVASFSSRGPNSMSPAVLKPDIVAPGVD----------------------ILSAYPPIGSKDIQGYALLSGTSMSCP 524 (954)
Q Consensus 467 ~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~----------------------I~sa~~~~~~~~~~~y~~~SGTSMAaP 524 (954)
.+.++.||+|||+. |||+|||++ |+++++. +.|..++|||||||
T Consensus 346 -~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~------~~~~~~sGTS~AaP 411 (471)
T 3t41_A 346 -KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN------GRYIYQAGTALATP 411 (471)
T ss_dssp -TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT------SSEEEECSHHHHHH
T ss_pred -CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCC------CCEEeecchHHHHH
Confidence 23478999999974 599999987 8999886 78999999999999
Q ss_pred HHHHHHHHHHhhCC-CCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCC
Q 042478 525 HVAGIAALIKSLHR-DWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPG 592 (954)
Q Consensus 525 ~VAG~aALl~q~~P-~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pg 592 (954)
||||++|||+|++| .|+|++||++|++||.+... .++..||+|+||+.+|++..
T Consensus 412 ~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~--------------~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 412 KVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN--------------KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp HHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC--------------CCHHHHTTCBBCHHHHTTTT
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC--------------CCcCccccChhCHHHHHHHH
Confidence 99999999999999 89999999999999996421 45568999999999999843
No 9
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=100.00 E-value=8e-51 Score=473.22 Aligned_cols=370 Identities=22% Similarity=0.292 Sum_probs=270.7
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS 208 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G 208 (954)
+..+|..+ |+||+|||||||||++||+|.+..+ .+.+..+. + .++ +..+.+|||
T Consensus 13 ~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~~~---------~~~~~~~~------------~-~~~--~~~d~~gHG 66 (441)
T 1y9z_A 13 ATVLSDSQ--AGNRTICIIDSGYDRSHNDLNANNV---------TGTNNSGT------------G-NWY--QPGNNNAHG 66 (441)
T ss_dssp CSSSCCTT--GGGCEEEEEESCCCTTSTTTTTSEE---------EECCCTTS------------C-CTT--CCCSSCCHH
T ss_pred hhhhhhcC--CCCcEEEEEcCCCCCCChhHhcCcc---------cCcccCCC------------C-CCC--CCCCCCCcH
Confidence 56789865 7799999999999999999975421 11111000 0 000 011123899
Q ss_pred hhhcccccccc-----ceeccCCC--cEEEEEEecCCC-CChHHHHHHHHHHhcC-CccEEEecccCCCCCCCccCcccH
Q 042478 209 TNTDEGLAAGL-----ARGGAPLA--HLAIYKACWDIG-CTDADVLKAFDKAIHD-GVDVLSVSIGNEIPLFSYIDQRDS 279 (954)
Q Consensus 209 Ta~v~G~a~G~-----~~GvAP~A--~L~~yKv~~~~g-~~~~dil~Aid~Ai~d-gvdVINlSlG~~~~~~~~~~~~d~ 279 (954)
| |++|++++. +.||||+| +|+.||+++..| ++.+++++||+||+++ |+||||||||... . . ..
T Consensus 67 T-~vAgiia~~~~~~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G~~~--~---~--~~ 138 (441)
T 1y9z_A 67 T-HVAGTIAAIANNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSG--S---T--TT 138 (441)
T ss_dssp H-HHHHHHHCCCSSSBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSC--C---B--HH
T ss_pred H-HHHHHHhcccCCCCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCCCCC--C---C--HH
Confidence 9 999987763 68999995 999999998877 8889999999999999 9999999999874 1 1 46
Q ss_pred HHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecC-------------------CCe---
Q 042478 280 IAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLG-------------------NHQ--- 337 (954)
Q Consensus 280 ~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg-------------------~~~--- 337 (954)
+..++.+|.++|++||+||||+|.....+++..||+|+|||++.+.........+ ++.
T Consensus 139 ~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s~~~~g~g~~~~ 218 (441)
T 1y9z_A 139 ERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLAD 218 (441)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEEECSTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeeccccCCCcccce
Confidence 7788889999999999999999988778888899999999998775433322222 221
Q ss_pred -EEeeeeeeccCc-C-Cceee--eeecccc--ccCCCCCCccCCC--CCCcccccceEEEEecCCCCc-----hHHHHHH
Q 042478 338 -VLWGQSIDIGKV-S-HGFTG--LTYSERI--AFDPDSANDCRQG--SLNATLAAGKIILCFSRPDTQ-----DIQSAAI 403 (954)
Q Consensus 338 -~~~g~s~~~~~~-~-~~~~~--l~~~~~~--~~~~~~~~~C~~~--~~~~~~v~Gkivl~~~~~g~~-----~~~~k~~ 403 (954)
.+.|.+++.... + ...++ +.+.... .........|... .++..+++|||++|+| |.| .+.+|..
T Consensus 219 ~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~r--g~~~~~~~~~~~~~~ 296 (441)
T 1y9z_A 219 ITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVER--VGNQGSSYPEINSTK 296 (441)
T ss_dssp EEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEEC--CSCSSSSCTHHHHHH
T ss_pred eecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEec--cccCcccccHHHHHH
Confidence 223333321110 0 00000 0111000 0001123457753 5678899999999999 544 7889999
Q ss_pred HHHHcCceEEEEEecCCCC---------CCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCccccc
Q 042478 404 SVTQAGGVGLIYAQFHTDG---------LDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASF 474 (954)
Q Consensus 404 ~~~~aGa~gvi~~n~~~~~---------~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~F 474 (954)
+++++|+.|+|++|+.... ....+.+|.+.++.++|+.|++|+.+..
T Consensus 297 ~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~------------------------ 352 (441)
T 1y9z_A 297 ACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQST------------------------ 352 (441)
T ss_dssp HHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSEE------------------------
T ss_pred HHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCCc------------------------
Confidence 9999999999999886432 2345679999999999999998763210
Q ss_pred CCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 475 SSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 475 SS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
.+ ++.. ++.|..+||||||||||||++|||+|+||+|+|++||++||+||+
T Consensus 353 ---------------t~--------~~~~------~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~ 403 (441)
T 1y9z_A 353 ---------------TV--------SNQG------NQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATAD 403 (441)
T ss_dssp ---------------EE--------EEEE------EESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSB
T ss_pred ---------------cc--------cccc------CCCceeecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhch
Confidence 11 1111 267999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhHHHhhhcCCC
Q 042478 555 QTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGH 611 (954)
Q Consensus 555 ~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy~~flc~~g~ 611 (954)
+++..+ .+.+||+|+||+.+|+ ||+.|||+.++
T Consensus 404 ~~~~~g-------------~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~ 436 (441)
T 1y9z_A 404 DLSVAG-------------RDNQTGYGMINAVAAK-----------AYLDESCTGPT 436 (441)
T ss_dssp CCSSSS-------------CBTTTBTCBCCHHHHH-----------HHHHHCTTCC-
T ss_pred hhccCC-------------CcccccccccCHHHHH-----------HHHHhhhcCCC
Confidence 775443 2457999999999995 59999999874
No 10
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Probab=100.00 E-value=3.9e-53 Score=504.66 Aligned_cols=339 Identities=20% Similarity=0.219 Sum_probs=57.7
Q ss_pred ceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCceeec
Q 042478 33 NVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKL 112 (954)
Q Consensus 33 ~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~~~l 112 (954)
+.|||+|++... ....+.|.+++...... .....++++.|++.|+||+++++++++++|+++|+|++|++++.+..
T Consensus 76 g~YIV~lk~~~~---~~~~~~~~~~l~a~~~~-~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~ 151 (692)
T 2p4e_P 76 GTYVVVLKEETH---LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 151 (692)
T ss_dssp EEEEEEECTTCC---HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CcEEEEECCCCC---HHHHHHHHHHHHHHHhh-cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecccccc
Confidence 489999998632 22234455555443311 11245799999999999999999999999999999999999998865
Q ss_pred cccccccccccccccCccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCcccc
Q 042478 113 HTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLI 192 (954)
Q Consensus 113 ~t~~s~~~~gl~~~~~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kii 192 (954)
. ...|.+..+.........|..+.+|+||+|||||||||++||+|.++... ..|...-+ .
T Consensus 152 ~-~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~~-----~~~~~~~d--~------------ 211 (692)
T 2p4e_P 152 Q-SIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMV-----TDFENVPE--E------------ 211 (692)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-CCCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceEe-----cccccccC--C------------
Confidence 3 33465444332101224688888999999999999999999999865321 01110000 0
Q ss_pred ceeccccCCCCCCCchhhhccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC------CccEEEeccc
Q 042478 193 GARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD------GVDVLSVSIG 265 (954)
Q Consensus 193 ga~~~~~~~~~~~G~GTa~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d------gvdVINlSlG 265 (954)
.+..|.....+.+|||| |++|+++|...||||+|+|++|||+++.| ++.+++++||+||+++ |++|||||||
T Consensus 212 dg~~~~~~~~D~~GHGT-HVAGiIAg~~~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlG 290 (692)
T 2p4e_P 212 DGTRFHRQASKCDSHGT-HLAGVVSGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLA 290 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccCCCCCCCCcHH-HhhhHhhcCCCccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCC
Confidence 00011111122338999 99999999889999999999999998776 7889999999999986 8999999999
Q ss_pred CCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCc-cccCCCceEEEcccccCCCccceeecCCCeEEeeeee
Q 042478 266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQT-IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSI 344 (954)
Q Consensus 266 ~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t-~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~ 344 (954)
+.. . ..+..++.+|.++||+||+||||+|.+... .++..|++|+|||++.+..
T Consensus 291 g~~--s------~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~------------------ 344 (692)
T 2p4e_P 291 GGY--S------RVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQ------------------ 344 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC--c------HHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCC------------------
Confidence 753 2 456778888999999999999999977543 3677899999998653210
Q ss_pred eccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCC
Q 042478 345 DIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLD 424 (954)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~ 424 (954)
T Consensus 345 -------------------------------------------------------------------------------- 344 (692)
T 2p4e_P 345 -------------------------------------------------------------------------------- 344 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCC
Q 042478 425 SCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP 504 (954)
Q Consensus 425 ~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~ 504 (954)
....-+.||+|||. |||+|||++|+++++.
T Consensus 345 ------------------------------------------~a~~ss~fSn~G~~--------vDI~APG~~I~St~~~ 374 (692)
T 2p4e_P 345 ------------------------------------------PVTLGTLGTNFGRC--------VDLFAPGEDIIGASSD 374 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------ccccccccCCCCCc--------eeEEecCCcEEeeccC
Confidence 00001238999984 5999999999999986
Q ss_pred CCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478 505 IGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT 556 (954)
Q Consensus 505 ~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~ 556 (954)
. ++.|..++|||||||||||++|||+|++|+|+|++||++|++||.+.
T Consensus 375 ~----~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~ 422 (692)
T 2p4e_P 375 C----STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 422 (692)
T ss_dssp ----------------------------------------------------
T ss_pred C----CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence 2 25799999999999999999999999999999999999999999864
No 11
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_J
Probab=100.00 E-value=9.8e-52 Score=403.85 Aligned_cols=153 Identities=20% Similarity=0.345 Sum_probs=123.1
Q ss_pred CCccceeeecCCCCCCccccccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhc-CCCCceeeEEEEE
Q 042478 785 TPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTA-DKAGYVIPVEITV 863 (954)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~-~~~g~~i~v~i~v 863 (954)
||| ||||++ +++|||+|+||+|+|+|||||+|||+|||+|+||||||++|+ +|+|++|||+|||
T Consensus 1 m~~-----k~dp~~----------~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~~G~~IpV~itV 65 (166)
T 3iz5_J 1 MPP-----KLDPTQ----------VVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV 65 (166)
T ss_dssp --------------------------CEEEEECTTCCCCHHHHSTTCCTTTSCSSSHHHHHHHHHCSSCSCSCEEEEEEE
T ss_pred CCC-----CCCCCc----------eEEEEEEEecCcccCCCCcchhhccCCCCHHHHHHHHHHHhcccCCCCeEeEEEEE
Confidence 677 999988 889999999999999999999999999999999999999999 9999999999999
Q ss_pred eCCCeEEEEEeCCCHHHHHHHHhCCCCCCCCCCC--ceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceE
Q 042478 864 YDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQ--QKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGID 941 (954)
Q Consensus 864 ~~dr~~~~~~~~p~~s~li~k~~~~~~~~~~~~~--~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~ 941 (954)
+||||+|++ +||+|+||+||||+++|+++|++ +++|+||++||+|||++|++|+++++|+++||+|+||||||||+
T Consensus 66 -~dRsf~f~v-~Ppas~Ll~Ka~g~~~gs~~~~k~i~~vG~it~~qi~eIA~~K~~dl~a~~l~~avk~IlGTArSmGi~ 143 (166)
T 3iz5_J 66 -QNRQAKVSV-VPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCT 143 (166)
T ss_dssp -ETTEEEEEC-TTTTHHHHHHHHTCCSCCSSTTTSCSSCCCCCHHHHHHHHHHHTTTSCCSCHHHHHHHHHHHSCC----
T ss_pred -cCCeEEEEE-cCcHHHHHHHhcCCCCCCCCCCCccceeeEEeHHHHHHHHHHHHhhhcccCHHHHHHHhHheeeeeeEE
Confidence 599999999 99999999999999999999998 56999999999999999999999999999999999999999999
Q ss_pred EcCCCchhhhccC
Q 042478 942 IDPPVLETKKKEL 954 (954)
Q Consensus 942 v~~~~~~~~~~~~ 954 (954)
|+++-|+++.++|
T Consensus 144 V~g~~p~~v~~~i 156 (166)
T 3iz5_J 144 VDGKDPKDLQQEI 156 (166)
T ss_dssp -------------
T ss_pred EecCCHHHHHHHH
Confidence 9999999988764
No 12
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ...
Probab=100.00 E-value=6.8e-52 Score=397.35 Aligned_cols=143 Identities=57% Similarity=0.897 Sum_probs=75.9
Q ss_pred cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHH
Q 042478 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKA 885 (954)
Q Consensus 806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~ 885 (954)
|++.++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||||+||||+|++++||+|+||+||
T Consensus 1 k~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~G~~ipV~itv~~drsf~~~~~~Ppas~Ll~Ka 80 (146)
T 3egv_B 1 KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKA 80 (146)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHTTTSTTCEEEEEEEEETTSCEEEEECCCCHHHHC---
T ss_pred CceEEEEEEEEecccccCCCCcchhhcccCCCHHHHHHHHHHHhcccCCCEeeEEEEEeCCCeEEEEEeCCCHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCch
Q 042478 886 AGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLE 948 (954)
Q Consensus 886 ~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~ 948 (954)
||+++|+++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+||+..+.
T Consensus 81 ~g~~~gs~~p~~~~vG~it~~qi~eIA~~K~~d~~a~~l~~a~k~I~GTA~SmGi~V~g~~~~ 143 (146)
T 3egv_B 81 AGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGSARSMGVEVVGAPEV 143 (146)
T ss_dssp ---------------------------------------------------------------
T ss_pred hCCCCCCCCCCCeeeeeecHHHHHHHHHHHhhhhcccCHHHHHHHhHhhhhcCeEEEECCCcC
Confidence 999999999999999999999999999999999999999999999999999999999997664
No 13
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=100.00 E-value=1.4e-50 Score=388.35 Aligned_cols=137 Identities=38% Similarity=0.671 Sum_probs=133.8
Q ss_pred eeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCC-CceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHh
Q 042478 808 VLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKA-GYVIPVEITVYDDRSFTFILKTPPASVLLLKAA 886 (954)
Q Consensus 808 ~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~-g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~ 886 (954)
++++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+ |++|||+||||+||+|+|++++||+|+||+|||
T Consensus 4 ~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T~~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaa 83 (145)
T 2ftc_G 4 VGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAA 83 (145)
T ss_pred eEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEeecHHHHHHHHHHhCCC--CCC--cCHHHHHHHHHHhhcccceEEcC
Q 042478 887 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPD--LNC--TSIESAMRIIAGTAANMGIDIDP 944 (954)
Q Consensus 887 ~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~--~~~--~~l~~~~k~i~gta~smG~~v~~ 944 (954)
|+++||++|+++++|+||++||+|||++|++| |++ ++|+++||+|+||||||||+|++
T Consensus 84 g~~~gs~~p~~~~vG~it~~qv~eIA~~K~~d~~l~a~~~~l~~a~k~I~GTArSmGi~V~~ 145 (145)
T 2ftc_G 84 GIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK 145 (145)
T ss_pred CCCCCCCCCCCcCcceEcHHHHHHHHHHhCcchhccCccCCHHHHHHHHHHHHhcCeEEEeC
Confidence 99999999999999999999999999999997 999 99999999999999999999984
No 14
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Probab=100.00 E-value=2.2e-51 Score=400.49 Aligned_cols=145 Identities=32% Similarity=0.589 Sum_probs=69.8
Q ss_pred EEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCCCHHHHHHHHhCCC
Q 042478 810 GLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVE 889 (954)
Q Consensus 810 ~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p~~s~li~k~~~~~ 889 (954)
++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||||+||||+|++++||+|+||+||||++
T Consensus 3 ~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaagi~ 82 (162)
T 1vq8_I 3 GTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGFE 82 (162)
T ss_dssp ----------------------------------------------------------------CCCCHHHHHHHTTSCC
T ss_pred eEEEEEeecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478 890 KGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL 954 (954)
Q Consensus 890 ~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~ 954 (954)
+|+++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+|+++.|+++.++|
T Consensus 83 kgs~~p~k~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~p~~vi~~I 147 (162)
T 1vq8_I 83 TGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIEGENPREFKERI 147 (162)
T ss_dssp SCCSSTTTSCCEEECHHHHHHHHHHTTTTCCCSSHHHHHHHHHHHTTTTTEEEC-----------
T ss_pred CCCCCCCCceeeeeeHHHHHHHHHHHHHhhcccCHHHHHHHHHhhhHhCeEEEeccCHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999987754
No 15
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=100.00 E-value=1.8e-51 Score=402.27 Aligned_cols=150 Identities=21% Similarity=0.347 Sum_probs=70.6
Q ss_pred ecCCCCCCccccccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEE
Q 042478 793 AMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFI 872 (954)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~ 872 (954)
||+|+. +++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||| +||+|+|+
T Consensus 4 k~~~~~----------~~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~~G~~ipV~Itv-~drsf~f~ 72 (165)
T 2zkr_i 4 KFDPNE----------IKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTI-QNRQAQIE 72 (165)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCCCCe----------eEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhcCCCeEEEEEEE-cCCeeeEE
Confidence 777765 8899999999999999999999999999999999999999999999999999999 79999999
Q ss_pred EeCCCHHHHHHHHhCCCCCCCC--CCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhh
Q 042478 873 LKTPPASVLLLKAAGVEKGSKD--PKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETK 950 (954)
Q Consensus 873 ~~~p~~s~li~k~~~~~~~~~~--~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~ 950 (954)
+ +||+|+||+||||+++|+++ |+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+|+++.|+++
T Consensus 73 v-tPpas~Ll~kaag~~~gs~k~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~P~ev 151 (165)
T 2zkr_i 73 V-VPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDI 151 (165)
T ss_dssp C-CCCHHHHHHHHHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHTEEEC-------
T ss_pred E-CCCHHHHHHHHhCCCCCCcccccCceEEeeEeHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHhCeeEEeCCCHHHH
Confidence 9 99999999999999999965 89999999999999999999999999999999999999999999999999999998
Q ss_pred hccC
Q 042478 951 KKEL 954 (954)
Q Consensus 951 ~~~~ 954 (954)
.++|
T Consensus 152 ~~~I 155 (165)
T 2zkr_i 152 IDDI 155 (165)
T ss_dssp ----
T ss_pred HHHH
Confidence 8764
No 16
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1
Probab=100.00 E-value=4.8e-49 Score=472.46 Aligned_cols=365 Identities=25% Similarity=0.256 Sum_probs=269.2
Q ss_pred ccCCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCH----HHHHHHH--cCCCe
Q 042478 28 VGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTK----TQAEKIA--ELPGV 101 (954)
Q Consensus 28 ~~~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~----~~~~~L~--~~p~V 101 (954)
.+..++.|||.|++.. ...++++. .+.++.+++. .+++++++++. +.+++|+ ++|+|
T Consensus 27 ~~~~~~~~IV~~k~~~---------~~~~~~~~-------~g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V 89 (671)
T 1r6v_A 27 GEYTEGKILVGYNDRS---------EVDKIVKA-------VNGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGI 89 (671)
T ss_dssp TSBCTTEEEEEESSHH---------HHHHHHHH-------HTCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSE
T ss_pred CccCCccEEEEECCCc---------CHHHHHHh-------cCCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCc
Confidence 3446789999999741 11222222 2346888886 79999999965 3356776 48999
Q ss_pred eEEEeCceeeccccc----c-----------------------ccccccccccCcccc-ccCCCCCCceEEEEEeCCCCC
Q 042478 102 VQVIPNGILKLHTTR----S-----------------------WEFMGLHYYQSSKNL-STESNMGEGTIIGIIDTGVWP 153 (954)
Q Consensus 102 ~~V~~~~~~~l~t~~----s-----------------------~~~~gl~~~~~~~~~-w~~~~~G~GVvVgVIDTGId~ 153 (954)
++|+|++.+++.... . ...|++... ++..+ |+. .+|+||+|||||||||+
T Consensus 90 ~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I-~~~~a~w~~-~tG~gV~VAVIDTGVd~ 167 (671)
T 1r6v_A 90 RYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAI-GVTQQLWEE-ASGTNIIVAVVDTGVDG 167 (671)
T ss_dssp EEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHT-TCCHHHHHH-CSCTTCEEEEEESCCBT
T ss_pred eEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhcc-CCchhhhhc-cCCCCCEEEEEeCCCCC
Confidence 999999876653100 0 011222211 34556 888 89999999999999999
Q ss_pred CCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhhcccccccc-----ceeccCCCc
Q 042478 154 ESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTDEGLAAGL-----ARGGAPLAH 228 (954)
Q Consensus 154 ~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~v~G~a~G~-----~~GvAP~A~ 228 (954)
+||+|.++... +.+.. .+..+. ...+..+.+|||| |++|+++|. +.||||+|+
T Consensus 168 ~HpdL~~~~~~---------g~~~~--------~~~~~p----~~~d~~d~~gHGT-hVAGiIAa~~ng~gv~GVAP~A~ 225 (671)
T 1r6v_A 168 THPDLEGQVIA---------GYRPA--------FDEELP----AGTDSSYGGSAGT-HVAGTIAAKKDGKGIVGVAPGAK 225 (671)
T ss_dssp TSGGGTTTBCC---------EEEGG--------GTEEEC----TTCBCCTTCSHHH-HHHHHHHCCCSSSSCCCSCTTSE
T ss_pred CCccccccEEe---------ccccc--------CCCcCC----CCCCCccCCCcch-hhhhhhhccCCCCceEEECCCCE
Confidence 99999864221 11100 000000 0001111237999 999987664 689999999
Q ss_pred EEEEEEecC------CC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCC
Q 042478 229 LAIYKACWD------IG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGND 301 (954)
Q Consensus 229 L~~yKv~~~------~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~ 301 (954)
|+.+|+++. .+ ...+.+++||+||+++|+||||||||+.. + . ..+..++.+|.++|++||+||||+
T Consensus 226 I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~----~-s--~~l~~Ai~~A~~~GvlvVaAAGN~ 298 (671)
T 1r6v_A 226 IMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----Y-S--YTMKEAFDYAMEHGVVMVVSAGNN 298 (671)
T ss_dssp EEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----C-C--HHHHHHHHHHHHTTCEEEEECCSC
T ss_pred EEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC----C-C--HHHHHHHHHHHhCCCEEEEeCCCC
Confidence 999999976 23 34567899999999999999999999864 2 2 578889999999999999999999
Q ss_pred CCCC-CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcc
Q 042478 302 GPVA-QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNAT 380 (954)
Q Consensus 302 G~~~-~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~ 380 (954)
|.+. ..+++..|++|+|||++.+..
T Consensus 299 g~~~~~~yPA~~~~VItVgA~d~~g~------------------------------------------------------ 324 (671)
T 1r6v_A 299 TSDSHHQYPAGYPGVIQVAALDYYGG------------------------------------------------------ 324 (671)
T ss_dssp SSSCCCCBTTTSTTCEEEEEEEEETT------------------------------------------------------
T ss_pred CCCCCccCcccCCCeEEEEEEcCCCC------------------------------------------------------
Confidence 9764 556778899999998642210
Q ss_pred cccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCc
Q 042478 381 LAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPE 460 (954)
Q Consensus 381 ~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~ 460 (954)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCC------------CCCCceEeecCCCchhHHHHH
Q 042478 461 TVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGS------------KDIQGYALLSGTSMSCPHVAG 528 (954)
Q Consensus 461 ~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~------------~~~~~y~~~SGTSMAaP~VAG 528 (954)
...+++|||+||.. ||+|||++|+++++.... ..++.|..++|||||||||||
T Consensus 325 -------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAG 389 (671)
T 1r6v_A 325 -------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTG 389 (671)
T ss_dssp -------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHH
T ss_pred -------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEEecCccHHHHHHHH
Confidence 01368899999976 999999999999875321 113579999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCCccccCCchhH
Q 042478 529 IAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDY 602 (954)
Q Consensus 529 ~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pglvyd~~~~dy 602 (954)
++|||+|++|+|+|++||++|++||++++..| .+..||+|+||+.+|++..|.++....||
T Consensus 390 vaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g-------------~d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 390 VVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-------------WDHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-------------CBTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC-------------CCCCcccceeCHHHHhhhhcCCCCCccce
Confidence 99999999999999999999999999764332 34689999999999999887766544444
No 17
>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.9e-51 Score=398.26 Aligned_cols=145 Identities=36% Similarity=0.600 Sum_probs=128.3
Q ss_pred EEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEE-eCCCeEEEEEeCCCHHHHHHHHhCC
Q 042478 810 GLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITV-YDDRSFTFILKTPPASVLLLKAAGV 888 (954)
Q Consensus 810 ~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v-~~dr~~~~~~~~p~~s~li~k~~~~ 888 (954)
++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||| |+||||+|++++||+|+||+||||+
T Consensus 4 ~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~G~~IpV~ItV~~~dRsf~f~vk~Ppas~Ll~Ka~g~ 83 (164)
T 3j21_H 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKDFAGMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELGL 83 (164)
T ss_dssp SSSCEEEESSCCCCHHHHHHHCCCSSSCTTHHHHHHHHHHCCSSCCEEEECBCCCTTTCCCCBCCSSSSSTTHHHHHHCC
T ss_pred eEEEEEEecCccCCCCCcchhhcccCCcHHHHHHHHHHHHhhcCCCeeEEEEEEecCCceEEEEEcCCCHHHHHHHHhCC
Confidence 368999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcCCCchhhhccC
Q 042478 889 EKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL 954 (954)
Q Consensus 889 ~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~~~~~~~~~~~ 954 (954)
++|+++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+|+++.|+++.++|
T Consensus 84 ~kgs~~p~k~~vG~it~~qi~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g~~p~~v~~~i 149 (164)
T 3j21_H 84 EKGSGEPKHNIVGNLTMEQVIKIAKMKKDQMLALTLKAAAKEVIGTALSMGVTVEGKDPREVQKEI 149 (164)
T ss_dssp CSCCSSTTTCCSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHCCC---------------
T ss_pred CCCCCCCCCceeeeeeHHHHHHHHHHHHhhhcccCHHHHHHHHHHHhhcceEEEeccCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999987764
No 18
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Probab=100.00 E-value=2e-52 Score=398.66 Aligned_cols=140 Identities=56% Similarity=0.880 Sum_probs=137.2
Q ss_pred ccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCC-CceeeEEEEEeCCCeEEEEEeCCCHHHHHH
Q 042478 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKA-GYVIPVEITVYDDRSFTFILKTPPASVLLL 883 (954)
Q Consensus 805 ~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~-g~~i~v~i~v~~dr~~~~~~~~p~~s~li~ 883 (954)
+||+.++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+ |++|||+||||+||||+|++++||+|+||+
T Consensus 1 akk~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~k~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ 80 (141)
T 3r8s_I 1 AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK 80 (141)
T ss_dssp CCCCSCCCCCCSCSSSSSCTTTTCTTSSSSSCCSSSTTTTGGGTHHHHCSCSCCCBCCCCSSSSSCCCCBCCCCSSTTTT
T ss_pred CceEEEEEEEEEecCccCCCCCcchhhccCCCCHHHHHHHHHHHHhcccCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHH
Confidence 4788999999999999999999999999999999999999999999976 999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcC
Q 042478 884 KAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDP 944 (954)
Q Consensus 884 k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~ 944 (954)
||+|+++||++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+||+
T Consensus 81 ka~g~~~gs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~g 141 (141)
T 3r8s_I 81 KAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED 141 (141)
T ss_dssp SSSSCSSCCSSTTTSCCSCCCSSTTSTTTSCCSSCCSCSCTTTTTTTSTTTSSSSCCCCCC
T ss_pred HHhCCCCCCCCCCCcEeeEecHHHHHHHHHHHHhhhcCcCHHHHHHHHHHhhhcceEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999986
No 19
>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A
Probab=100.00 E-value=4.6e-47 Score=429.56 Aligned_cols=290 Identities=22% Similarity=0.238 Sum_probs=191.1
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccc-----cc------eecc
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKL-----IG------ARWF 197 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~ki-----ig------a~~~ 197 (954)
...+|.++..|+||+|||||||||++||+|++.... +....|+..++...... ...+..+ .+ ...+
T Consensus 20 ~~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 96 (357)
T 4h6x_A 20 LADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVS--KVFPYWHEPAEPITPED-YAAFQSIRDQGLKGKEKEEALEAV 96 (357)
T ss_dssp HHHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEE--ECCCTTSCCCCCCCHHH-HHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcc--cccccccccccccCccc-ccccccccCccccccccccccccc
Confidence 457999999999999999999999999999876544 44556655443221100 0000000 00 0000
Q ss_pred ccCC-C--CCCCchhhhcccccccc----ceeccCCCcEEEEEEecCCC------CChHHHHHHHHHHhcCCccEEEecc
Q 042478 198 IKGI-M--DMINASTNTDEGLAAGL----ARGGAPLAHLAIYKACWDIG------CTDADVLKAFDKAIHDGVDVLSVSI 264 (954)
Q Consensus 198 ~~~~-~--~~~G~GTa~v~G~a~G~----~~GvAP~A~L~~yKv~~~~g------~~~~dil~Aid~Ai~dgvdVINlSl 264 (954)
..+. + +.+|||| ||+|+++|. +.||||+|+|+.+|++.... +...++++||+||++.|++||||||
T Consensus 97 ~~~~~~~~D~~gHGT-hVAGiiag~~~~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 175 (357)
T 4h6x_A 97 IPDTKDRIVLNDHAC-HVTSTIVGQEHSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAF 175 (357)
T ss_dssp CTTTHHHHHHHHHHH-HHHHHHHCCTTSSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSEEEEC-
T ss_pred cCCCCCCcCCCCcHH-HHHHHHhccCCCCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCEEeecc
Confidence 0000 0 0117999 999987664 68999999999999985431 4456789999999999999999999
Q ss_pred cCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeee
Q 042478 265 GNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSI 344 (954)
Q Consensus 265 G~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~ 344 (954)
|...... ... +.+..++.+|.++|++||+||||+|.....+++..|++|+|||++.
T Consensus 176 G~~~~~~-~~~--~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------- 231 (357)
T 4h6x_A 176 CRPTQTS-EGE--EILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV--------------------- 231 (357)
T ss_dssp -------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT---------------------
T ss_pred ccCCccc-cch--hHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc---------------------
Confidence 9875222 333 7788899999999999999999999887788888899999998532
Q ss_pred eccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCC
Q 042478 345 DIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLD 424 (954)
Q Consensus 345 ~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~ 424 (954)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCC
Q 042478 425 SCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP 504 (954)
Q Consensus 425 ~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~ 504 (954)
.+.++.|||||+.. .||||+|||++|+++++.
T Consensus 232 -------------------------------------------~~~~~~fSn~G~~~-----~~~di~APG~~i~s~~~~ 263 (357)
T 4h6x_A 232 -------------------------------------------DGTPCHFSNWGGNN-----TKEGILAPGEEILGAQPC 263 (357)
T ss_dssp -------------------------------------------TSSBCTTCC---CT-----TTTEEEEECSSEEECCTT
T ss_pred -------------------------------------------CCcccccccCCCCC-----CccceeecCCCeEeccCC
Confidence 23468899999754 589999999999999987
Q ss_pred CCCCCCCceEeecCCCchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCC
Q 042478 505 IGSKDIQGYALLSGTSMSCPHVAGIAALIKS----LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG 580 (954)
Q Consensus 505 ~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~Ga 580 (954)
++.|..++|||||||||||++|||++ .+|.|+|+|||++|++||++++.. ....+..||+
T Consensus 264 -----~~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~-----------~~~~~~~~G~ 327 (357)
T 4h6x_A 264 -----TEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE-----------VVEEPERCLR 327 (357)
T ss_dssp -----CSCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------------------------CTT
T ss_pred -----CCcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC-----------CCCCccccee
Confidence 36678899999999999999999996 466899999999999999976422 2234567999
Q ss_pred CccCcccccC
Q 042478 581 GHVNPNKAMN 590 (954)
Q Consensus 581 G~vn~~~Al~ 590 (954)
|+||+.+|++
T Consensus 328 G~vn~~~A~~ 337 (357)
T 4h6x_A 328 GFVNIPGAMK 337 (357)
T ss_dssp CBCCHHHHHH
T ss_pred EEecHHHHHH
Confidence 9999999987
No 20
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Probab=100.00 E-value=4e-46 Score=406.87 Aligned_cols=252 Identities=31% Similarity=0.443 Sum_probs=208.9
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS 208 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G 208 (954)
+..+|..+++|+||+|||||||||++||+|+.. . +.+|... . ....+.+|||
T Consensus 13 ~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~--~--------------g~~~~~~---------~---~~~~d~~gHG 64 (274)
T 1r0r_E 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLNVV--G--------------GASFVAG---------E---AYNTDGNGHG 64 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE--E--------------EEECSTT---------C---CTTCCSSSHH
T ss_pred CHHHHhcCCCCCCCEEEEEcCCCCCCCHhHcCC--C--------------CccccCC---------C---CCCCCCCCCH
Confidence 568999999999999999999999999999411 0 0011000 0 0011223899
Q ss_pred hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478 209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI 282 (954)
Q Consensus 209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~ 282 (954)
| |++|++++. +.||||+|+|+.+|+++..+ +..+++++||+||+++|++|||||||... . . ..+..
T Consensus 65 T-~vAgiia~~~~~~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~----~-~--~~~~~ 136 (274)
T 1r0r_E 65 T-HVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS----G-S--TAMKQ 136 (274)
T ss_dssp H-HHHHHHHCCSSSSBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS----C-C--HHHHH
T ss_pred H-HHHHHHHccCCCCceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC----C-c--HHHHH
Confidence 9 999987664 68999999999999998776 77889999999999999999999999874 1 2 67888
Q ss_pred HHHHHHHCCCEEEEeCCCCCCCC----CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478 283 GSFHAIAKGITVVSSAGNDGPVA----QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY 358 (954)
Q Consensus 283 a~~~A~~~Gi~VV~AAGN~G~~~----~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~ 358 (954)
++.++.++|++||+||||+|... ...++..|++|+|||++.
T Consensus 137 ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~----------------------------------- 181 (274)
T 1r0r_E 137 AVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS----------------------------------- 181 (274)
T ss_dssp HHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT-----------------------------------
T ss_pred HHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC-----------------------------------
Confidence 99999999999999999999762 345567789999997431
Q ss_pred ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478 359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV 438 (954)
Q Consensus 359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~ 438 (954)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecC
Q 042478 439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG 518 (954)
Q Consensus 439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SG 518 (954)
.+.++.||++||.+ ||+|||++|+++++. +.|..++|
T Consensus 182 -----------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~------~~~~~~sG 218 (274)
T 1r0r_E 182 -----------------------------NSNRASFSSVGAEL--------EVMAPGAGVYSTYPT------NTYATLNG 218 (274)
T ss_dssp -----------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT------TEEEEECS
T ss_pred -----------------------------CCCcCccCCCCCCc--------eEEeCCCCeEeecCC------CCEEEecc
Confidence 13467899999854 999999999999986 78999999
Q ss_pred CCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 519 TSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 519 TSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
||||||||||++|||+|++|+|++++||++|++||++++ +++.||+|+||+.+|++
T Consensus 219 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----------------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 219 TSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS----------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC----------------CCCCcccCccCHHHHhC
Confidence 999999999999999999999999999999999999652 24679999999999985
No 21
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Probab=100.00 E-value=1e-45 Score=404.87 Aligned_cols=250 Identities=33% Similarity=0.390 Sum_probs=203.2
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCC---CCCC
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGI---MDMI 205 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~---~~~~ 205 (954)
+..+|+.+..|+||+|||||||||++||+|.++. +..++|.++. .+.+
T Consensus 20 ~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~~-----------------------------~~~~~~~~~~~~~~d~~ 70 (280)
T 1dbi_A 20 TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGKV-----------------------------IKGYDFVDNDYDPMDLN 70 (280)
T ss_dssp HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTTE-----------------------------EEEEETTTTBSCCCCSS
T ss_pred cHHHHhhcCCCCCCEEEEEeCCcCCCChhhccCc-----------------------------ccceeccCCCCCCCCCC
Confidence 6789999888889999999999999999997431 1112222111 1223
Q ss_pred Cchhhhcccccccc------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCccc
Q 042478 206 NASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRD 278 (954)
Q Consensus 206 G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d 278 (954)
|||| |++|++++. +.||||+|+|+.+|+++..+ ++.+++++||+||+++|++|||||||... .. .
T Consensus 71 gHGT-~vAgiia~~~~~~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~-----~~--~ 142 (280)
T 1dbi_A 71 NHGT-HVAGIAAAETNNATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC-----HT--T 142 (280)
T ss_dssp SHHH-HHHHHHHCCCSSSSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-----CC--H
T ss_pred CcHH-HHHHHHhCcCCCCCcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-----CC--H
Confidence 8999 999987664 58999999999999998776 78899999999999999999999999874 12 6
Q ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478 279 SIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY 358 (954)
Q Consensus 279 ~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~ 358 (954)
.+..++.+|.++|++||+||||+|......++..|++|+|||++.
T Consensus 143 ~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----------------------------------- 187 (280)
T 1dbi_A 143 TLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ----------------------------------- 187 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-----------------------------------
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-----------------------------------
Confidence 788899999999999999999999877677788899999998531
Q ss_pred ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478 359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV 438 (954)
Q Consensus 359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~ 438 (954)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecC
Q 042478 439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG 518 (954)
Q Consensus 439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SG 518 (954)
.+.++.||++||.+ ||+|||++|+++++. +.|..++|
T Consensus 188 -----------------------------~~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~------~~~~~~sG 224 (280)
T 1dbi_A 188 -----------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITG------NRYAYMSG 224 (280)
T ss_dssp -----------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETT------TEEEEECS
T ss_pred -----------------------------CCCcCCCCCCCCCc--------eEEEecCCeEeecCC------CCEEEccC
Confidence 13467899999865 999999999999986 78999999
Q ss_pred CCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 519 TSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 519 TSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
||||||||||++|||++ |++++.+||++|++||+++... ...||+|+||+.+|++
T Consensus 225 TS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~---------------~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 225 TSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT---------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB---------------TTTBSSEECCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC---------------CCcccCCEECHHHHhc
Confidence 99999999999999987 8999999999999999975421 2469999999999986
No 22
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*
Probab=100.00 E-value=7e-46 Score=403.68 Aligned_cols=251 Identities=32% Similarity=0.443 Sum_probs=210.8
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS 208 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G 208 (954)
+..+|..+++|+||+|||||||| .+||+|+... +.+|... .....+.+|||
T Consensus 13 ~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~~~~----------------~~~~~~~------------~~~~~d~~gHG 63 (269)
T 1gci_A 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDLNIRG----------------GASFVPG------------EPSTQDGNGHG 63 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCC-CCCTTCCEEE----------------EEECSTT------------CCSCSCSSSHH
T ss_pred cHHHHhcCCCCCCCEEEEECCCC-CCCHhhcccC----------------CcccCCC------------CCCCCCCCCCh
Confidence 56899999999999999999999 8999994210 0011000 00011223899
Q ss_pred hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478 209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI 282 (954)
Q Consensus 209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~ 282 (954)
| |++|++++. +.||||+|+|+.+|+++..+ +..+++++||+||+++|++|||||||... . . ..+..
T Consensus 64 T-~vAgiia~~~~~~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~----~-~--~~~~~ 135 (269)
T 1gci_A 64 T-HVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS----P-S--ATLEQ 135 (269)
T ss_dssp H-HHHHHHHCCCSSSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS----C-C--HHHHH
T ss_pred H-HHHHHHhcCcCCCCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC----C-C--HHHHH
Confidence 9 999987664 68999999999999998765 77889999999999999999999999874 1 2 57888
Q ss_pred HHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478 283 GSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI 362 (954)
Q Consensus 283 a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~ 362 (954)
++.++.++|++||+||||+|.....+++..|++|+|||++.
T Consensus 136 ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------------------- 176 (269)
T 1gci_A 136 AVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ--------------------------------------- 176 (269)
T ss_dssp HHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT---------------------------------------
T ss_pred HHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC---------------------------------------
Confidence 89999999999999999999887778888899999998531
Q ss_pred ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478 363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI 442 (954)
Q Consensus 363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l 442 (954)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478 443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS 522 (954)
Q Consensus 443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA 522 (954)
.+.++.||++||.+ ||+|||++|+++++. +.|..++|||||
T Consensus 177 -------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~------~~~~~~sGTS~A 217 (269)
T 1gci_A 177 -------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPG------STYASLNGTSMA 217 (269)
T ss_dssp -------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT------TEEEEECSHHHH
T ss_pred -------------------------CCCCCCCCCCCCCc--------ceEecCCCeEeecCC------CCEEEcCcHHHH
Confidence 13467899999975 999999999999986 789999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
||||||++|||+|++|+|++.+||++|++||++++ +++.||+|+||+.+|++
T Consensus 218 aP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g----------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG----------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS----------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC----------------CCCCcccCccCHHHHcC
Confidence 99999999999999999999999999999999652 24579999999999985
No 23
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Probab=100.00 E-value=7.9e-46 Score=405.93 Aligned_cols=255 Identities=33% Similarity=0.472 Sum_probs=210.7
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS 208 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G 208 (954)
+..+|..+++|+||+|||||||||++||+|+... +.+|.... .....+.+|||
T Consensus 13 ~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~~~----------------g~~~~~~~-----------~~~~~d~~gHG 65 (281)
T 1to2_E 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG----------------GASMVPSE-----------TNPFQDNNSHG 65 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEEE----------------EEECCTTC-----------CCTTCCSSSHH
T ss_pred hHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcCcC----------------CccccCCC-----------CCCCCCCCCcH
Confidence 5689999999999999999999999999995210 00010000 00011223899
Q ss_pred hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478 209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI 282 (954)
Q Consensus 209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~ 282 (954)
| |++|++++. +.||||+|+|+.+|+++..+ +..+++++||+||+++|++|||||||... . . ..+..
T Consensus 66 T-~vAgiia~~~~~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~----~-~--~~~~~ 137 (281)
T 1to2_E 66 T-HVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS----G-S--AALKA 137 (281)
T ss_dssp H-HHHHHHHCCSSSSSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC----C-C--HHHHH
T ss_pred H-HHHHHHhccCCCCcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCC----C-C--HHHHH
Confidence 9 999987664 68999999999999998766 77889999999999999999999999874 1 2 67888
Q ss_pred HHHHHHHCCCEEEEeCCCCCCCC----CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478 283 GSFHAIAKGITVVSSAGNDGPVA----QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY 358 (954)
Q Consensus 283 a~~~A~~~Gi~VV~AAGN~G~~~----~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~ 358 (954)
++.++.++|++||+||||+|... ...++..|++|+|||++.
T Consensus 138 ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~----------------------------------- 182 (281)
T 1to2_E 138 AVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS----------------------------------- 182 (281)
T ss_dssp HHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-----------------------------------
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC-----------------------------------
Confidence 99999999999999999999762 345567789999997431
Q ss_pred ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478 359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV 438 (954)
Q Consensus 359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~ 438 (954)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecC
Q 042478 439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG 518 (954)
Q Consensus 439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SG 518 (954)
.+.++.||++||.+ ||+|||++|+++++. +.|..++|
T Consensus 183 -----------------------------~~~~~~fS~~G~~~--------di~APG~~i~s~~~~------~~~~~~sG 219 (281)
T 1to2_E 183 -----------------------------SNQRASFSSVGPEL--------DVMAPGVSIQSTLPG------NKYGAYNG 219 (281)
T ss_dssp -----------------------------TSCBCTTCCCSTTC--------CEEEECSSEEEEETT------TEEEEECB
T ss_pred -----------------------------CCCcCCcCCCCCCc--------eEEecCCCeEeecCC------CCEEecCc
Confidence 13467899999965 999999999999986 78999999
Q ss_pred CCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccCCC
Q 042478 519 TSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPG 592 (954)
Q Consensus 519 TSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~pg 592 (954)
||||||||||++|||+|++|+|++++||++|++||++++ +++.||+|+||+.+|+++.
T Consensus 220 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----------------~~~~~G~G~v~~~~a~~~~ 277 (281)
T 1to2_E 220 TSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG----------------DSFYYGKGLINVQAAAQHH 277 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS----------------CHHHHTTCBCCHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC----------------CCCCcccceecHHHHhhhh
Confidence 999999999999999999999999999999999999652 3467999999999999853
No 24
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Probab=100.00 E-value=6e-46 Score=415.39 Aligned_cols=259 Identities=31% Similarity=0.414 Sum_probs=206.4
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS 208 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G 208 (954)
+..+|..+++|+||+|||||||||++||+|.++... +.+|.... +. ......+.+|||
T Consensus 30 ~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~~~~--------------~~~~~~~~------~~--~~~~~~d~~gHG 87 (327)
T 2x8j_A 30 APAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIG--------------GVNLTTDY------GG--DETNFSDNNGHG 87 (327)
T ss_dssp HHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGGEEE--------------EEECSSGG------GG--CTTCCCCSSSHH
T ss_pred hHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhcccC--------------CccccCCC------CC--CCCCCCCCCCch
Confidence 668999999999999999999999999999753211 00110000 00 000012223899
Q ss_pred hhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhc------CCccEEEecccCCCCCCCccCc
Q 042478 209 TNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIH------DGVDVLSVSIGNEIPLFSYIDQ 276 (954)
Q Consensus 209 Ta~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~------dgvdVINlSlG~~~~~~~~~~~ 276 (954)
| |++|+++|. +.||||+|+|+.+|+++..| ++.+++++||+||++ ++++|||||||... . .
T Consensus 88 T-~VAgiia~~~~~~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~S~G~~~----~-~- 160 (327)
T 2x8j_A 88 T-HVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPT----D-S- 160 (327)
T ss_dssp H-HHHHHHHCCCCSSBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSEEEECEEBSC----C-C-
T ss_pred H-HHHHHHhccCCCCCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceEEEECCCcCC----C-C-
Confidence 9 999987765 78999999999999998776 778899999999999 89999999999874 1 2
Q ss_pred ccHHHHHHHHHHHCCCEEEEeCCCCCCCC-----CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCC
Q 042478 277 RDSIAIGSFHAIAKGITVVSSAGNDGPVA-----QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSH 351 (954)
Q Consensus 277 ~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~-----~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~ 351 (954)
..+..++.+|.++|++||+||||+|... ...++..|++|+|||++.
T Consensus 161 -~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~---------------------------- 211 (327)
T 2x8j_A 161 -EELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF---------------------------- 211 (327)
T ss_dssp -HHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT----------------------------
T ss_pred -HHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC----------------------------
Confidence 5788889999999999999999999652 345667799999998531
Q ss_pred ceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccce
Q 042478 352 GFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPC 431 (954)
Q Consensus 352 ~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~ 431 (954)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCC
Q 042478 432 IKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ 511 (954)
Q Consensus 432 ~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 511 (954)
.+.++.||++||.+ ||+|||++|+++++. +
T Consensus 212 ------------------------------------~~~~~~fS~~G~~~--------di~APG~~i~s~~~~------~ 241 (327)
T 2x8j_A 212 ------------------------------------DLRLSDFTNTNEEI--------DIVAPGVGIKSTYLD------S 241 (327)
T ss_dssp ------------------------------------TCCBSCC---CCCC--------SEEEECSSEEEECST------T
T ss_pred ------------------------------------CCCCCCccCCCCCc--------eEecCcCceEeecCC------C
Confidence 13467899999854 999999999999986 7
Q ss_pred ceEeecCCCchhHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcc
Q 042478 512 GYALLSGTSMSCPHVAGIAALIKSL-----HRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPN 586 (954)
Q Consensus 512 ~y~~~SGTSMAaP~VAG~aALl~q~-----~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~ 586 (954)
.|..++|||||||||||++|||+|+ +|.+++.+||++|++||++++ .++..||+|+||+.
T Consensus 242 ~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g---------------~~~~~~G~G~vd~~ 306 (327)
T 2x8j_A 242 GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIG---------------FTAQAEGNGFLTLD 306 (327)
T ss_dssp CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCS---------------SCHHHHTTCEECTT
T ss_pred CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCC---------------CCCCceeeeEECHH
Confidence 8999999999999999999999999 999999999999999999652 13568999999999
Q ss_pred cccC
Q 042478 587 KAMN 590 (954)
Q Consensus 587 ~Al~ 590 (954)
+|++
T Consensus 307 ~A~~ 310 (327)
T 2x8j_A 307 LVER 310 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
No 25
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Probab=100.00 E-value=6e-45 Score=404.92 Aligned_cols=274 Identities=28% Similarity=0.325 Sum_probs=215.9
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS 208 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G 208 (954)
+..+|..+.+|+||+|||||||||++||+|.++... +.+|..... .......+.+|||
T Consensus 15 ~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~~~~--------------~~~~~~~~~--------~~~~~~~d~~gHG 72 (310)
T 2ixt_A 15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNNVEQ--------------CKDFTGATT--------PINNSCTDRNGHG 72 (310)
T ss_dssp TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTTEEE--------------EEESSSSSS--------CEETCCCCSSSHH
T ss_pred chhhhhccCCCCCcEEEEEecCCCCCCHHHhhcccc--------------cccccCCCC--------CCCCCCCCCCCCH
Confidence 568999999999999999999999999999753211 111110000 0001112223899
Q ss_pred hhhcccccccc-------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCc-----cEEEecccCCCCCCCccC
Q 042478 209 TNTDEGLAAGL-------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV-----DVLSVSIGNEIPLFSYID 275 (954)
Q Consensus 209 Ta~v~G~a~G~-------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgv-----dVINlSlG~~~~~~~~~~ 275 (954)
| |++|++++. +.||||+|+|+.+|++++.+ ++.+++++||+||+++++ +|||||||... . .
T Consensus 73 T-~vAgiia~~~~~n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S~G~~~----~-~ 146 (310)
T 2ixt_A 73 T-HVAGTALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSA----N-N 146 (310)
T ss_dssp H-HHHHHHHCBCCTTSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSS----C-C
T ss_pred H-HHHHHHhccCCCCCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEcCCCCC----C-C
Confidence 9 999987654 58999999999999998776 688899999999999988 99999999974 1 2
Q ss_pred cccHHHHHHHHHHHCCCEEEEeCCCCCCCC--CccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCce
Q 042478 276 QRDSIAIGSFHAIAKGITVVSSAGNDGPVA--QTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGF 353 (954)
Q Consensus 276 ~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~--~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~ 353 (954)
..+..++.+|.++|++||+||||+|... ...++..|++|+|||++...
T Consensus 147 --~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~---------------------------- 196 (310)
T 2ixt_A 147 --SLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ---------------------------- 196 (310)
T ss_dssp --HHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE----------------------------
T ss_pred --HHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc----------------------------
Confidence 6788889999999999999999999763 44567789999999854110
Q ss_pred eeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEE
Q 042478 354 TGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIK 433 (954)
Q Consensus 354 ~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~ 433 (954)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eehhhHHHHHHHHhhcCCCccccCCCceeecccCCC--cccccCCCCCCCCC----CCCcCCeEEecCCceEecCCCCCC
Q 042478 434 VNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSP--RVASFSSRGPNSMS----PAVLKPDIVAPGVDILSAYPPIGS 507 (954)
Q Consensus 434 i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~--~~a~FSS~GP~~~~----~~~lKPDI~APG~~I~sa~~~~~~ 507 (954)
..+ .++.||++||.... ..+.||||+|||++|+++++.
T Consensus 197 ---------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~~~~--- 240 (310)
T 2ixt_A 197 ---------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN--- 240 (310)
T ss_dssp ---------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEECTT---
T ss_pred ---------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECCCCCEeeecCC---
Confidence 001 46789999995321 123599999999999999986
Q ss_pred CCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCc
Q 042478 508 KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNP 585 (954)
Q Consensus 508 ~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~ 585 (954)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||++.+..+. +......++.||+|++|+
T Consensus 241 ---~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~------~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 241 ---GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG------YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp ---SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS------TTCCSSSBTTTBTCBCCC
T ss_pred ---CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC------cccccCCccccccceeec
Confidence 789999999999999999999999999999999999999999998764331 123456778999999986
No 26
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Probab=100.00 E-value=5.3e-45 Score=399.07 Aligned_cols=249 Identities=32% Similarity=0.410 Sum_probs=209.1
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCC---CCCC
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGI---MDMI 205 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~---~~~~ 205 (954)
+..+|+.+ +|+||+|||||||||++||+|.++.. ..++|.++. .+.+
T Consensus 20 ~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~~~-----------------------------~~~~~~~~~~~~~d~~ 69 (279)
T 1thm_A 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGKVV-----------------------------GGWDFVDNDSTPQNGN 69 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTTEE-----------------------------EEEETTTTBSCCCCSS
T ss_pred hHHHHhcC-CCCCCEEEEEccCCCCCCcchhcCcc-----------------------------ccccccCCCCCCCCCC
Confidence 66889887 79999999999999999999974311 112222111 1223
Q ss_pred Cchhhhcccccccc------ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCccc
Q 042478 206 NASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRD 278 (954)
Q Consensus 206 G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d 278 (954)
|||| |++|++++. +.||||+|+|+.+|+++..+ ++.+++++||+||+++|++|||||||... .. +
T Consensus 70 gHGT-~vAgiia~~~~n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~-----~~--~ 141 (279)
T 1thm_A 70 GHGT-HCAGIAAAVTNNSTGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV-----GN--S 141 (279)
T ss_dssp SHHH-HHHHHHHCCCSSSSSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS-----CC--H
T ss_pred CcHH-HHHHHHhCccCCCCccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC-----CC--H
Confidence 8999 999987764 57999999999999998766 77889999999999999999999999874 12 6
Q ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeee
Q 042478 279 SIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY 358 (954)
Q Consensus 279 ~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~ 358 (954)
.+..++.+|.++|+++|+||||+|.....+++..|++|+|||++.
T Consensus 142 ~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----------------------------------- 186 (279)
T 1thm_A 142 GLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ----------------------------------- 186 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-----------------------------------
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC-----------------------------------
Confidence 788899999999999999999999877778888899999998531
Q ss_pred ccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhh
Q 042478 359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEV 438 (954)
Q Consensus 359 ~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~ 438 (954)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecC
Q 042478 439 GTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG 518 (954)
Q Consensus 439 g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SG 518 (954)
.+.++.||++||.+ ||+|||++|+++++. +.|..++|
T Consensus 187 -----------------------------~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~------~~~~~~sG 223 (279)
T 1thm_A 187 -----------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT------STYASLSG 223 (279)
T ss_dssp -----------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETT------TEEEEECS
T ss_pred -----------------------------CCCcCCcCCCCCce--------EEEEcCCCeEEEeCC------CCEEEccc
Confidence 13467899999865 999999999999986 78999999
Q ss_pred CCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 519 TSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 519 TSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
||||||||||++||| ++|.+++++||++|++||++++..+ ..||+|+||+.+|++
T Consensus 224 TS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~---------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 224 TSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG---------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT---------------TTBSSEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC---------------ccccCCeeCHHHHhc
Confidence 999999999999999 5799999999999999999764221 468999999999985
No 27
>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A
Probab=100.00 E-value=1.9e-45 Score=403.55 Aligned_cols=257 Identities=25% Similarity=0.286 Sum_probs=204.8
Q ss_pred CCCC-CceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCC--C--CCCchhh
Q 042478 136 SNMG-EGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIM--D--MINASTN 210 (954)
Q Consensus 136 ~~~G-~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~--~--~~G~GTa 210 (954)
..+| +||+|||||||||++||+|.+..+. + .++ +..+.. + .+||||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~~~---------~-----~~~--------------~~~~~~~~d~~~~gHGT- 53 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGADLT---------V-----LPT--------------LAPTAARSDGFMSAHGT- 53 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCEEE---------E-----CCC--------------SSCCCCCTTCHHHHHHH-
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCeee---------c-----CcC--------------CCCCCCCCCCCCCCccc-
Confidence 3578 7999999999999999999754321 0 000 000000 0 117999
Q ss_pred hcccccccc----ceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHHHH
Q 042478 211 TDEGLAAGL----ARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGS 284 (954)
Q Consensus 211 ~v~G~a~G~----~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~a~ 284 (954)
|++|+++|. +.||||+|+|+.+|++.+.+ .+..++++||+||+++|++|||||||...... ..+ ..+..++
T Consensus 54 ~VAGiiag~~~~~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~-~~~--~~~~~ai 130 (282)
T 3zxy_A 54 HVASIIFGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFG-EAD--GWLENAV 130 (282)
T ss_dssp HHHHHHHCCTTSSSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSS-CCC--HHHHHHH
T ss_pred ceeehhhccCCceeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccc-ccc--HHHHHHH
Confidence 999987664 68999999999999986543 67788999999999999999999999764111 223 6678889
Q ss_pred HHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccccc
Q 042478 285 FHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAF 364 (954)
Q Consensus 285 ~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~ 364 (954)
..+.++|+++|+||||+|......+...|++|+|||++.
T Consensus 131 ~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~----------------------------------------- 169 (282)
T 3zxy_A 131 SLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD----------------------------------------- 169 (282)
T ss_dssp HHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT-----------------------------------------
T ss_pred HHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC-----------------------------------------
Confidence 999999999999999999887778888899999998531
Q ss_pred CCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHHHH
Q 042478 365 DPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILS 444 (954)
Q Consensus 365 ~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~ 444 (954)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCchhH
Q 042478 445 YIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCP 524 (954)
Q Consensus 445 ~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMAaP 524 (954)
.+.++.||+||+.. .||||+|||++|+++++. +.|..++|||||||
T Consensus 170 -----------------------~~~~~~~S~~~~~~-----~~~di~ApG~~i~s~~~~------~~~~~~sGTS~AaP 215 (282)
T 3zxy_A 170 -----------------------HGHPLDFSNWGSTY-----EQQGILAPGEDILGAKPG------GGTERLSGTAFATP 215 (282)
T ss_dssp -----------------------TSCBCSSSCCCHHH-----HHHEEEEECSSEEEECTT------SCEEEECSHHHHHH
T ss_pred -----------------------CCccccccCCCCCc-----cccceeccCcceeeecCC------CceeecCCCcccch
Confidence 13467899998753 688999999999999987 78999999999999
Q ss_pred HHHHHHHHHHhhC----CCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 525 HVAGIAALIKSLH----RDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 525 ~VAG~aALl~q~~----P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
||||++|||+|++ |.++|++||++|++||++++.. .+.....||+|+||+.+|++
T Consensus 216 ~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~-----------~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 216 IVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD-----------APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC------------------CGGGTTCBCCHHHHHH
T ss_pred HHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC-----------CCCccCceeeeEeCHHHHHH
Confidence 9999999999874 7899999999999999965421 23345679999999999986
No 28
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Probab=100.00 E-value=6.5e-45 Score=406.19 Aligned_cols=259 Identities=29% Similarity=0.391 Sum_probs=211.2
Q ss_pred ccccccCCCCCC--ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCC
Q 042478 129 SKNLSTESNMGE--GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMIN 206 (954)
Q Consensus 129 ~~~~w~~~~~G~--GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G 206 (954)
+..+|..+ +|+ ||+|||||||||++||+|.++... + .+|. ..+. +.. ..+..+.+|
T Consensus 17 ~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~~~~---------~-----~~~~----~~~~-~~~--~~~~~d~~g 74 (320)
T 2z30_A 17 APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAANIAW---------C-----VSTL----RGKV-STK--LRDCADQNG 74 (320)
T ss_dssp CGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGGEEE---------E-----EECG----GGCC-BCC--HHHHBCSSS
T ss_pred hHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhccccc---------C-----cccc----CCcc-CCC--CCCCCCCCC
Confidence 67899988 999 999999999999999999753211 0 0110 0000 000 000122338
Q ss_pred chhhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC--------------------CccEE
Q 042478 207 ASTNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD--------------------GVDVL 260 (954)
Q Consensus 207 ~GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d--------------------gvdVI 260 (954)
||| |++|+++|. +.||||+|+|+.+|+++..| +..+++++||+||+++ +++||
T Consensus 75 HGT-~vAgiia~~~n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vi 153 (320)
T 2z30_A 75 HGT-HVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVI 153 (320)
T ss_dssp HHH-HHHHHHHCCSSSBSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCTTSSSCCTTCTTSCCCSEE
T ss_pred CHH-HHHHHHHcccCCCceEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCcccccccccccccccccccCCceEE
Confidence 999 999987764 58999999999999998776 7788999999999987 99999
Q ss_pred EecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEe
Q 042478 261 SVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLW 340 (954)
Q Consensus 261 NlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~ 340 (954)
|||||... . . ..+..++.+|.++|++||+||||+|.....+++..|++|+|||++.
T Consensus 154 n~S~G~~~----~-~--~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----------------- 209 (320)
T 2z30_A 154 SMSLGGPA----D-D--SYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS----------------- 209 (320)
T ss_dssp EECEEBSC----C-C--HHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-----------------
T ss_pred EecCCCCC----C-C--HHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCC-----------------
Confidence 99999874 1 2 5678888899999999999999999887778888999999998531
Q ss_pred eeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCC
Q 042478 341 GQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT 420 (954)
Q Consensus 341 g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~ 420 (954)
T Consensus 210 -------------------------------------------------------------------------------- 209 (320)
T 2z30_A 210 -------------------------------------------------------------------------------- 209 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEe
Q 042478 421 DGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILS 500 (954)
Q Consensus 421 ~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~s 500 (954)
.+.++.||++|| +|+|||++|++
T Consensus 210 -----------------------------------------------~~~~~~~S~~g~----------~v~APG~~i~s 232 (320)
T 2z30_A 210 -----------------------------------------------NDNIASFSNRQP----------EVSAPGVDILS 232 (320)
T ss_dssp -----------------------------------------------TSCBCTTSCSSC----------SEEEECSSEEE
T ss_pred -----------------------------------------------CCCcCcccCCCC----------CEEeCCCCeEE
Confidence 134678999997 78999999999
Q ss_pred cCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhC-------------CCCCHHHHHHHHHhccccCCCCCccccccC
Q 042478 501 AYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH-------------RDWSPAAIRSALVTTASQTGTDGMNIFEEG 567 (954)
Q Consensus 501 a~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~-------------P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~ 567 (954)
+++. +.|..++|||||||||||++|||+|++ |+|++.+||++|++||+++...
T Consensus 233 ~~~~------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~-------- 298 (320)
T 2z30_A 233 TYPD------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT-------- 298 (320)
T ss_dssp EETT------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSS--------
T ss_pred eccC------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCCC--------
Confidence 9986 789999999999999999999999998 9999999999999999976432
Q ss_pred CCCCCCCCCCCCCCccCcccccC
Q 042478 568 STRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 568 ~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
..+..||+|+||+.+|++
T Consensus 299 -----g~~~~~G~G~vd~~~A~~ 316 (320)
T 2z30_A 299 -----GWDADYGYGVVRAALAVQ 316 (320)
T ss_dssp -----SSBTTTBTCBCCHHHHHH
T ss_pred -----CCCCCcCCceeCHHHHHH
Confidence 235679999999999986
No 29
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=100.00 E-value=6.8e-44 Score=444.13 Aligned_cols=347 Identities=21% Similarity=0.241 Sum_probs=241.7
Q ss_pred CCchhhhcccccccc-----ceeccCCCcEEEEEEecCCC---CChHHHHHHHHHHhc-----CCccEEEecccCCCCCC
Q 042478 205 INASTNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG---CTDADVLKAFDKAIH-----DGVDVLSVSIGNEIPLF 271 (954)
Q Consensus 205 ~G~GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g---~~~~dil~Aid~Ai~-----dgvdVINlSlG~~~~~~ 271 (954)
+|||| |++|+++|. +.||||+|+|+.+|+++..+ ++..+++++|.+|++ .|+||||||||.... .
T Consensus 270 ~GHGT-hVAGIIAa~~N~~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~-~ 347 (1354)
T 3lxu_X 270 SPHGT-HVSSIASGNHSSRDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHAN-W 347 (1354)
T ss_dssp CHHHH-HHHHHHCCCCSSSSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCS-C
T ss_pred CCcHH-HHHHHHhcCCCCCCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCCC-C
Confidence 37999 999988876 89999999999999997653 356778888888877 799999999999751 1
Q ss_pred CccCcccHHHHHHHHHH-HCCCEEEEeCCCCCCCCCcc--cc--CCCceEEEcccccCCCccceeecCCCeEEeeeeeec
Q 042478 272 SYIDQRDSIAIGSFHAI-AKGITVVSSAGNDGPVAQTI--VN--TAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDI 346 (954)
Q Consensus 272 ~~~~~~d~~~~a~~~A~-~~Gi~VV~AAGN~G~~~~t~--~~--~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~ 346 (954)
... +.+..++.+|. ++|++||+||||+|++..++ ++ ..+++|+|||++.+.........
T Consensus 348 -~~~--~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~------------- 411 (1354)
T 3lxu_X 348 -SNS--GRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM------------- 411 (1354)
T ss_dssp -SSC--CHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-----------------
T ss_pred -Ccc--HHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc-------------
Confidence 122 67788888886 89999999999999875544 34 37999999997643211000000
Q ss_pred cCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCC
Q 042478 347 GKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSC 426 (954)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~ 426 (954)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCC
Q 042478 427 NLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIG 506 (954)
Q Consensus 427 ~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~ 506 (954)
.....+.++.||||||+. ++.+||||+|||++|+++....
T Consensus 412 -------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~- 451 (1354)
T 3lxu_X 412 -------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFT- 451 (1354)
T ss_dssp -------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC-----------
T ss_pred -------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCC-
Confidence 001225689999999997 7899999999999999986532
Q ss_pred CCCCCceEeecCCCchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCc
Q 042478 507 SKDIQGYALLSGTSMSCPHVAGIAALIKS----LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGH 582 (954)
Q Consensus 507 ~~~~~~y~~~SGTSMAaP~VAG~aALl~q----~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~ 582 (954)
.+.|..++|||||||||||++|||++ .+|+|+|++||++|++||++.+. .+++.||+|+
T Consensus 452 ---~~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~--------------~~~~~~G~Gl 514 (1354)
T 3lxu_X 452 ---MSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY--------------VDPFAQGHGL 514 (1354)
T ss_dssp --------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT--------------SCTTTSSSSB
T ss_pred ---CCceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC--------------CCcccccCCE
Confidence 26799999999999999999999986 89999999999999999996532 3456899999
Q ss_pred cCcccccCCCccccCCchhHHHhhhcCCCCcc-cceecccccccccCCCcCccCCCCCeeecccCCCCceEEEEEEEEec
Q 042478 583 VNPNKAMNPGLVYDITVEDYIQFLCFMGHNDA-SISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTVTRKVTNV 661 (954)
Q Consensus 583 vn~~~Al~pglvyd~~~~dy~~flc~~g~~~~-~i~~~~~~~~~c~~~~~~~~~lN~psi~~~~~~~~~~~tv~rtvtNv 661 (954)
||+.+|++..+.|+..+.+|+.|+|..++... .|. +.+.......+++.+|+.+
T Consensus 515 LDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIy-------------------------lR~~~~~~~~~~tv~V~p~ 569 (1354)
T 3lxu_X 515 LNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIH-------------------------LRQGVQRNSIDYNVYIEPI 569 (1354)
T ss_dssp CCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEE-------------------------ECSSCCCSCEEEEEEEEEE
T ss_pred eCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceE-------------------------EeccccCCceEEEEEEeee
Confidence 99999999999999999999999999874322 111 1000001222333333221
Q ss_pred C------CC--CceeE--EEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCCCceEEEEEEECC-----
Q 042478 662 G------QI--NSAYE--ALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDD----- 726 (954)
Q Consensus 662 g------~~--~~tY~--~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~G~l~w~~~----- 726 (954)
= +. ...|. +.+...+ .+...|..|.+ .++.++|.|+++++. ...+..++.|...|-
T Consensus 570 f~~~~~~~~~~~i~f~~~l~L~~t~--~wv~~p~~l~l--~~~~r~~~v~vDp~~-----L~~G~h~~~v~~~D~~~~~~ 640 (1354)
T 3lxu_X 570 FYNDKEADPKDKFNFNVRLNLIASQ--PWVQCGAFLDL--SYGTRSIAVRVDPTG-----LQPGVHSAVIRAYDTDCVQK 640 (1354)
T ss_dssp ESSCSCSSSTTCSCCCCEEEEEESS--TTEEECSCEEC--TTSCEEEEEEECGGG-----CCSEEEEEEEEEEESSCTTS
T ss_pred ecCcccCChhhccceEEEEEEecCC--Cceecccceee--cCCCceEEEEECCCC-----CCCcceeEEEEEEEcCCccc
Confidence 1 11 22222 2222222 23334888877 578889999999887 455788999987763
Q ss_pred cceEEcCccccccc
Q 042478 727 SVDSRFNGFLSIHF 740 (954)
Q Consensus 727 ~~~vr~P~~v~~~~ 740 (954)
....|+|+.|....
T Consensus 641 gp~f~ipvTv~~P~ 654 (1354)
T 3lxu_X 641 GSLFEIPVTVVQPH 654 (1354)
T ss_dssp CCSEEEEEEEEECB
T ss_pred CceEEeeEEEEeee
Confidence 57788888875544
No 30
>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}
Probab=100.00 E-value=4e-45 Score=405.64 Aligned_cols=268 Identities=24% Similarity=0.305 Sum_probs=213.3
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCch
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINAS 208 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~G 208 (954)
.+.+|+.+..++||+|||||||||++||+|.+..+. .. ..|. + .. .+...+.+|||
T Consensus 10 ~~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~~~--~~-----------~~~~----~-----~~--~~~~~d~~gHG 65 (306)
T 4h6w_A 10 LKKLWSETRGDPKICVAVLDGIVDQNHPCFIGADLT--RL-----------PSLV----S-----GE--ANANGSMSTHG 65 (306)
T ss_dssp HHHHHHHCSCCTTCEEEEESSCCCTTSGGGTTCEEE--EC-----------C---------------------CCCCHHH
T ss_pred HHHHHhhhCCCCCCEEEEEcCCCCCCChhHcCCccc--CC-----------Cccc----C-----CC--CCCCCCCCCch
Confidence 347899988789999999999999999999765322 00 0000 0 00 00011223799
Q ss_pred hhhcccccccc----ceeccCCCcEEEEEEecCCC--CChHHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHHHH
Q 042478 209 TNTDEGLAAGL----ARGGAPLAHLAIYKACWDIG--CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI 282 (954)
Q Consensus 209 Ta~v~G~a~G~----~~GvAP~A~L~~yKv~~~~g--~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~~~ 282 (954)
| ||+|+++|. +.||||+|+|+.+|++.+.+ +...++++||+||+++|++|||+|||.....+ ... ..+..
T Consensus 66 T-hVAGiiag~~~~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~~~-~~~--~~~~~ 141 (306)
T 4h6w_A 66 T-HVASIIFGQHDSPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAG-EAD--TWLEK 141 (306)
T ss_dssp H-HHHHHHHCCTTSSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSS-CCC--HHHHH
T ss_pred H-HHHHHHHccccCCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccccCC-Ccc--HHHHH
Confidence 9 999987664 68999999999999996543 67788999999999999999999999754222 333 66888
Q ss_pred HHHHHHHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478 283 GSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI 362 (954)
Q Consensus 283 a~~~A~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~ 362 (954)
++..+.++|++||+||||+|......++..+++|+|||++.+
T Consensus 142 ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------------------- 183 (306)
T 4h6w_A 142 AIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ-------------------------------------- 183 (306)
T ss_dssp HHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT--------------------------------------
T ss_pred HHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC--------------------------------------
Confidence 899999999999999999998877777888999999985321
Q ss_pred ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478 363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI 442 (954)
Q Consensus 363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l 442 (954)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478 443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS 522 (954)
Q Consensus 443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA 522 (954)
+.+++||++|+.. .||||+|||++|+++++. +.|..++|||||
T Consensus 184 --------------------------~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~~------~~~~~~sGTS~A 226 (306)
T 4h6w_A 184 --------------------------GKPVDFSNWGDAY-----QKQGILAPGKDILGAKPN------GGTIRLSGTSFA 226 (306)
T ss_dssp --------------------------SCBCSSSCBCHHH-----HHHEEEEECSSEEEECTT------SCEEEECSHHHH
T ss_pred --------------------------CCccccccccCCc-----CcceeecCCcCcccccCC------CceeccCCCcch
Confidence 3356789998653 588999999999999987 789999999999
Q ss_pred hHHHHHHHHHHHhh----CCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 523 CPHVAGIAALIKSL----HRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 523 aP~VAG~aALl~q~----~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
||||||++|||+++ +|.|+|++||++|++||++++..+ ......||+|+||+.+|++
T Consensus 227 aP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~-----------~~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 227 TPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD-----------TDDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT-----------CSCGGGGTTCBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC-----------CCCCCCcceeecCHHHHHH
Confidence 99999999999864 699999999999999999765332 2234579999999999987
No 31
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Probab=100.00 E-value=1.2e-44 Score=408.72 Aligned_cols=268 Identities=19% Similarity=0.140 Sum_probs=209.6
Q ss_pred ccccccCCCCCC--ceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceecccc-CCCCCC
Q 042478 129 SKNLSTESNMGE--GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIK-GIMDMI 205 (954)
Q Consensus 129 ~~~~w~~~~~G~--GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~-~~~~~~ 205 (954)
+..+|.. .+|+ ||+||||||||| +||+|.++... +. +|... +..|.. ...+.+
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~~~~---------~~-----~~~~~--------~~~~~~~~~~d~~ 87 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDSEFA---------KF-----SFTQD--------GSPFPVKKSEALY 87 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTCEEE---------EE-----ECBTT--------CCSSCCSSSHHHH
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcCccc---------CC-----cccCC--------CCCCCCCCCCCCC
Confidence 5678988 8999 999999999999 99999754211 10 11000 000000 001112
Q ss_pred Cchhhhcccccccc--ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcC------CccEEEecccCCCCCCCccCcc
Q 042478 206 NASTNTDEGLAAGL--ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHD------GVDVLSVSIGNEIPLFSYIDQR 277 (954)
Q Consensus 206 G~GTa~v~G~a~G~--~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~d------gvdVINlSlG~~~~~~~~~~~~ 277 (954)
|||| |++|++++. +.||||+|+|+.+|++++.+.. ++++||+||+++ |++|||||||.... . ...
T Consensus 88 gHGT-~vAgiia~~~g~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~~~~~~~~~Vin~S~G~~~~-~-~~~-- 160 (347)
T 2iy9_A 88 IHGT-AMASLIASRYGIYGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNVFLAPGEEKIINISGGQKGV-A-SAS-- 160 (347)
T ss_dssp HHHH-HHHHHHHCSSSSCCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCTTSCTTEEEEEEESSCBCCC---CCH--
T ss_pred CcHH-HHHHHHhcccCCcccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhhhcccCCceEEEeccccCCC-C-CcC--
Confidence 7999 999988775 7999999999999999765433 999999999999 99999999998641 1 233
Q ss_pred cHHHHHHHHHHHCCCEEEEeCCCCCCC-------CCccccCCC----------ceEEEccccc--CCCccceeecCCCeE
Q 042478 278 DSIAIGSFHAIAKGITVVSSAGNDGPV-------AQTIVNTAP----------WIITVGATTI--DRAFPTAITLGNHQV 338 (954)
Q Consensus 278 d~~~~a~~~A~~~Gi~VV~AAGN~G~~-------~~t~~~~ap----------~vitVgAs~~--d~~~~~~~~lg~~~~ 338 (954)
+.+..++..|.++|++||+||||+|.+ ...+++..| ++|+|||++. +...
T Consensus 161 ~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~g~~----------- 229 (347)
T 2iy9_A 161 VWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGET----------- 229 (347)
T ss_dssp HHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCTTSC-----------
T ss_pred HHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCCCce-----------
Confidence 678889999999999999999999975 345566777 9999998653 1100
Q ss_pred EeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEec
Q 042478 339 LWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQF 418 (954)
Q Consensus 339 ~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~ 418 (954)
T Consensus 230 -------------------------------------------------------------------------------- 229 (347)
T 2iy9_A 230 -------------------------------------------------------------------------------- 229 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCce
Q 042478 419 HTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDI 498 (954)
Q Consensus 419 ~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I 498 (954)
....+..+.||++||+ ||||+|||++|
T Consensus 230 ----------------------------------------------~~~~~~~~~fS~~G~~-------~~di~APG~~i 256 (347)
T 2iy9_A 230 ----------------------------------------------PVLHGGGITGSRFGNN-------WVDIAAPGQNI 256 (347)
T ss_dssp ----------------------------------------------CCBCCCSSSCBCBCTT-------TCSEEEECSSE
T ss_pred ----------------------------------------------ecccCCCCCCCCCCCC-------CCEEEeCCCCe
Confidence 0001345799999995 67999999999
Q ss_pred EecCCCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCC
Q 042478 499 LSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDI 578 (954)
Q Consensus 499 ~sa~~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~ 578 (954)
+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||++.+..+ ...|
T Consensus 257 ~s~~~~------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~--------------~~~~ 316 (347)
T 2iy9_A 257 TFLRPD------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV--------------DKVT 316 (347)
T ss_dssp EEECTT------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT--------------TTSG
T ss_pred EeecCC------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC--------------Cccc
Confidence 999986 78999999999999999999999999999999999999999999754221 2589
Q ss_pred CCCccCcccccCC
Q 042478 579 GGGHVNPNKAMNP 591 (954)
Q Consensus 579 GaG~vn~~~Al~p 591 (954)
|+|+||+.+|++.
T Consensus 317 G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 317 EGRVLNAEKAISM 329 (347)
T ss_dssp GGEECCHHHHHHH
T ss_pred cCCEecHHHHHHH
Confidence 9999999999983
No 32
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Probab=100.00 E-value=7.1e-44 Score=401.41 Aligned_cols=280 Identities=26% Similarity=0.334 Sum_probs=214.6
Q ss_pred CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccc-------cC---CCCC------CCCCCccc
Q 042478 128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQ-------KG---EKFN------SSNCNRKL 191 (954)
Q Consensus 128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~-------~~---~~f~------~~~cn~ki 191 (954)
++..+|+.+++|+||+||||||||| +||+|.++... .|+-... .+ +.++ ...|+.
T Consensus 20 ~~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-- 90 (340)
T 3lpc_A 20 KADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP------GYDFISNSQISLDGDGRDADPFDEGDWFDNWACGG-- 90 (340)
T ss_dssp CHHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC------CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSC--
T ss_pred CHHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc------CccccCCccccccCCCccCCccccccccccccccC--
Confidence 3678999999999999999999998 99999764322 1110000 00 0000 001110
Q ss_pred cceeccccCCCCCCCchhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc----------C
Q 042478 192 IGARWFIKGIMDMINASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH----------D 255 (954)
Q Consensus 192 iga~~~~~~~~~~~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~----------d 255 (954)
...-.....+..|||| |++|+++|. +.||||+|+|+.+|++...+++.+++++||+||++ .
T Consensus 91 --~~~~~~~~~d~~gHGT-~vAgiia~~~~~~~g~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~~~~~ 167 (340)
T 3lpc_A 91 --RPDPRKERSDSSWHGS-HVAGTIAAVTNNRIGVAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRN 167 (340)
T ss_dssp --TTCGGGSCBCCCCHHH-HHHHHHHCCCSSSSSCCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSCCCSS
T ss_pred --CCCcccCCCCCCCCHH-HHHHHHHccCCCCCcceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhcccccccccccC
Confidence 0000001122238999 999988774 48999999999999998878889999999999998 8
Q ss_pred CccEEEecccCCCCCCCccCcccHHHHHHHHHHHCCCEEEEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecC
Q 042478 256 GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLG 334 (954)
Q Consensus 256 gvdVINlSlG~~~~~~~~~~~~d~~~~a~~~A~~~Gi~VV~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg 334 (954)
+++|||||||... ... ..+..++.+|.++|++||+||||+|.... ..++..|++|+|||++.
T Consensus 168 ~~~Vin~S~G~~~----~~~--~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----------- 230 (340)
T 3lpc_A 168 PAKVINMSLGSDG----QCS--YNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS----------- 230 (340)
T ss_dssp CCSEEEECCCEES----CCC--HHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT-----------
T ss_pred CCeEEEeCcCCCC----Ccc--hhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC-----------
Confidence 9999999999864 223 56788889999999999999999997643 45677899999998531
Q ss_pred CCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEE
Q 042478 335 NHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLI 414 (954)
Q Consensus 335 ~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi 414 (954)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEec
Q 042478 415 YAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAP 494 (954)
Q Consensus 415 ~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~AP 494 (954)
.+.++.||++||. |||+||
T Consensus 231 -----------------------------------------------------~~~~~~~S~~g~~--------~di~Ap 249 (340)
T 3lpc_A 231 -----------------------------------------------------RGIRASFSNYGVD--------VDLAAP 249 (340)
T ss_dssp -----------------------------------------------------TSSBCTTCCBSTT--------CCEEEE
T ss_pred -----------------------------------------------------CCCcCCCCCCCCC--------ceEEec
Confidence 1346789999984 599999
Q ss_pred CCceEecCCCCCC-CCCCceEeecCCCchhHHHHHHHHHHHhh-C---CCCCHHHHHHHHHhccccCCCCCccccccCCC
Q 042478 495 GVDILSAYPPIGS-KDIQGYALLSGTSMSCPHVAGIAALIKSL-H---RDWSPAAIRSALVTTASQTGTDGMNIFEEGST 569 (954)
Q Consensus 495 G~~I~sa~~~~~~-~~~~~y~~~SGTSMAaP~VAG~aALl~q~-~---P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~ 569 (954)
|++|+++++.... ...+.|..++|||||||||||++|||+|+ + |.+++++||++|++||++..
T Consensus 250 G~~i~s~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~------------ 317 (340)
T 3lpc_A 250 GQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN------------ 317 (340)
T ss_dssp CSSEEEEEESCSSSCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCS------------
T ss_pred CCCeecccCCCCcCCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCC------------
Confidence 9999999876421 11346999999999999999999999998 5 99999999999999999652
Q ss_pred CCCCCCCCCCCCccCcccccCC
Q 042478 570 RKEADPFDIGGGHVNPNKAMNP 591 (954)
Q Consensus 570 ~~~~~~~~~GaG~vn~~~Al~p 591 (954)
......||+|+||+.+|++.
T Consensus 318 --~~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 318 --GRLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp --SCCSSCCCSSBCCHHHHHHH
T ss_pred --CCCCCCcccceecHHHHHHH
Confidence 12356899999999999874
No 33
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A
Probab=100.00 E-value=1.9e-43 Score=410.61 Aligned_cols=281 Identities=28% Similarity=0.324 Sum_probs=218.1
Q ss_pred cccccc-CCCCCCceEEEEEeCCCCC------CCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC-
Q 042478 129 SKNLST-ESNMGEGTIIGIIDTGVWP------ESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG- 200 (954)
Q Consensus 129 ~~~~w~-~~~~G~GVvVgVIDTGId~------~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~- 200 (954)
++.+|. .+++|+||+|||||||||+ .||+|.+.. +..++|.+.
T Consensus 10 ~~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~i-----------------------------~~~~~~~~~~ 60 (434)
T 1wmd_A 10 ADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKI-----------------------------TALYALGRTN 60 (434)
T ss_dssp HHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTCE-----------------------------EEEEETTTTT
T ss_pred chhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCCE-----------------------------eeeccccCCC
Confidence 457897 7999999999999999999 799986431 111222221
Q ss_pred -CCCCCCchhhhcccccccc---ceeccCCCcEEEEEEecCCCC---ChHHHHHHHHHHhcCCccEEEecccCCCCCCCc
Q 042478 201 -IMDMINASTNTDEGLAAGL---ARGGAPLAHLAIYKACWDIGC---TDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSY 273 (954)
Q Consensus 201 -~~~~~G~GTa~v~G~a~G~---~~GvAP~A~L~~yKv~~~~g~---~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~ 273 (954)
..+.+|||| |++|+++|. +.||||+|+|+.+|+++..|. ..+++.++|++|+++|++|||||||...... |
T Consensus 61 ~~~d~~gHGT-~VAgiiag~g~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~-~ 138 (434)
T 1wmd_A 61 NANDTNGHGT-HVAGSVLGNGSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGA-Y 138 (434)
T ss_dssp CCCCSSSHHH-HHHHHHHCCSSSSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTC-C
T ss_pred CCCCCCCcHH-HHHHHHHcCCCCceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcCCeEEEecCCCCcCCc-C
Confidence 112238999 999987664 489999999999999987663 4578999999999999999999999874111 2
Q ss_pred cCcccHHHHHHHHH-HHCCCEEEEeCCCCCCCCC--ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcC
Q 042478 274 IDQRDSIAIGSFHA-IAKGITVVSSAGNDGPVAQ--TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVS 350 (954)
Q Consensus 274 ~~~~d~~~~a~~~A-~~~Gi~VV~AAGN~G~~~~--t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~ 350 (954)
++...+++++ .++|+++|+||||+|.... ..++.++++|+|||++..+...
T Consensus 139 ----~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~---------------------- 192 (434)
T 1wmd_A 139 ----TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF---------------------- 192 (434)
T ss_dssp ----CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG----------------------
T ss_pred ----CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc----------------------
Confidence 4556667666 5899999999999998654 3456789999999976432100
Q ss_pred CceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccc
Q 042478 351 HGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIP 430 (954)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip 430 (954)
+.
T Consensus 193 -------------------------------------------~~----------------------------------- 194 (434)
T 1wmd_A 193 -------------------------------------------GS----------------------------------- 194 (434)
T ss_dssp -------------------------------------------CG-----------------------------------
T ss_pred -------------------------------------------Cc-----------------------------------
Confidence 00
Q ss_pred eEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCC--
Q 042478 431 CIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSK-- 508 (954)
Q Consensus 431 ~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~-- 508 (954)
.....+.++.||||||+. ++++||||+|||++|+++++.....
T Consensus 195 ---------------------------------~~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s~~~~~~~~~~ 239 (434)
T 1wmd_A 195 ---------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSS 239 (434)
T ss_dssp ---------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGG
T ss_pred ---------------------------------ccCCCCccccccCCCCCC--CCCCCceEEcCCCCeEecCCCCCCCcc
Confidence 001235689999999997 8999999999999999998643210
Q ss_pred ----CCCceEeecCCCchhHHHHHHHHHHHhhCCCC-----CHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCC
Q 042478 509 ----DIQGYALLSGTSMSCPHVAGIAALIKSLHRDW-----SPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIG 579 (954)
Q Consensus 509 ----~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~-----sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~G 579 (954)
..+.|..++|||||||||||++|||+|++|++ ++++||++|++||+++. ...+...||
T Consensus 240 ~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~-------------~~~~~~~~G 306 (434)
T 1wmd_A 240 FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG-------------LGYPNGNQG 306 (434)
T ss_dssp SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS-------------SCSSCTTTT
T ss_pred cccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccC-------------CCCCCccCC
Confidence 13689999999999999999999999998876 89999999999998642 123567899
Q ss_pred CCccCcccccCCC
Q 042478 580 GGHVNPNKAMNPG 592 (954)
Q Consensus 580 aG~vn~~~Al~pg 592 (954)
+|+||+.+|+...
T Consensus 307 ~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 307 WGRVTLDKSLNVA 319 (434)
T ss_dssp TCBCCHHHHHTCE
T ss_pred cCeEeHHHhcccc
Confidence 9999999999743
No 34
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Probab=100.00 E-value=1e-42 Score=381.56 Aligned_cols=232 Identities=30% Similarity=0.353 Sum_probs=196.7
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC---CCCCC
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG---IMDMI 205 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~---~~~~~ 205 (954)
...+|..+.+|+||+|||||||||++||+|.++.. .+++|.++ ..+.+
T Consensus 18 ~~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~~~-----------------------------~~~~~~~~~~~~~d~~ 68 (284)
T 1sh7_A 18 LDRNYNANFDGFGVTAYVIDTGVNNNHEEFGGRSV-----------------------------SGYDFVDNDADSSDCN 68 (284)
T ss_dssp CCSBCCCSCCCTTCEEEEEESCCCTTCTTTTTCEE-----------------------------EEEETTTTBSCCCCSS
T ss_pred chhhhhcCCCCCCCEEEEEcCCCCCCChhHcCCcc-----------------------------ccccccCCCCCCCCCC
Confidence 45789999999999999999999999999974311 11122211 11223
Q ss_pred CchhhhccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC--CccEEEecccCCCCCCCccCcccHHHH
Q 042478 206 NASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD--GVDVLSVSIGNEIPLFSYIDQRDSIAI 282 (954)
Q Consensus 206 G~GTa~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d--gvdVINlSlG~~~~~~~~~~~~d~~~~ 282 (954)
|||| |++|+++|...||||+|+|+.+|+++..+ ++.+++++||+||+++ +++|||||||... . ..+..
T Consensus 69 gHGT-~vAgiia~~~~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~~--~------~~~~~ 139 (284)
T 1sh7_A 69 GHGT-HVAGTIGGSQYGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQ--S------TALDS 139 (284)
T ss_dssp SHHH-HHHHHHHCTTTCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBSC--C------HHHHH
T ss_pred CcHH-HHHHHHhcccCCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCCC--C------HHHHH
Confidence 8999 99999988889999999999999998766 7788999999999974 7999999999873 2 67888
Q ss_pred HHHHHHHCCCEEEEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccc
Q 042478 283 GSFHAIAKGITVVSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSER 361 (954)
Q Consensus 283 a~~~A~~~Gi~VV~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~ 361 (954)
++.+|.++|++||+||||+|.+.. ..++..|++|+|||++.
T Consensus 140 ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------------------------------- 181 (284)
T 1sh7_A 140 AVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS-------------------------------------- 181 (284)
T ss_dssp HHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT--------------------------------------
T ss_pred HHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC--------------------------------------
Confidence 899999999999999999997642 45677899999998531
Q ss_pred cccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHH
Q 042478 362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQ 441 (954)
Q Consensus 362 ~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~ 441 (954)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCc
Q 042478 442 ILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSM 521 (954)
Q Consensus 442 l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSM 521 (954)
.+.++.||++||.+ ||+|||++|+++++. +.|..++||||
T Consensus 182 --------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~------~~~~~~sGTS~ 221 (284)
T 1sh7_A 182 --------------------------SDSRSSFSNWGSCV--------DLFAPGSQIKSAWYD------GGYKTISGTSM 221 (284)
T ss_dssp --------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTT------SSEEEECSHHH
T ss_pred --------------------------CCCcCcccCCCCcc--------EEEeccCCeEEecCC------CCEEEccChHH
Confidence 13467899999975 999999999999986 68999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478 522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT 556 (954)
Q Consensus 522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~ 556 (954)
|||||||++|||+|++|+|+|++||++|++||++.
T Consensus 222 AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 256 (284)
T 1sh7_A 222 ATPHVAGVAALYLQENNGLTPLQLTGLLNSRASEN 256 (284)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC
Confidence 99999999999999999999999999999999965
No 35
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} PDB: 3hjr_A
Probab=100.00 E-value=3e-43 Score=424.40 Aligned_cols=291 Identities=19% Similarity=0.145 Sum_probs=199.3
Q ss_pred CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCc
Q 042478 128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA 207 (954)
Q Consensus 128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~ 207 (954)
++..+|..+++|+||+|||||||||++||+|.++... ..| +|.. + .......++.+||
T Consensus 58 n~~~aw~~g~~G~gV~VaViDtGid~~Hpdl~~~~~~-----~~~--------~~~~---~------~~d~~p~d~~~gH 115 (600)
T 2oxa_A 58 NLWWAHRTGVLGHGVNVAVVDDGLAIAHPDLADNVRP-----GSK--------NVVT---G------SDDPTPTDPDTGH 115 (600)
T ss_dssp CCHHHHHTTCSCTTCEEEEESSCCCTTCTTTGGGBCS-----CCB--------CTTT---C------SSCCCCCSTTCCH
T ss_pred ChHHHHhcCCCCCCcEEEEecCCcCCCCcchhhcccc-----Cce--------eccC---C------CCCCCCCCCCCCC
Confidence 4678999999999999999999999999999754221 001 1100 0 0000001112389
Q ss_pred hhhhcccccccc-----ceeccCCCcEEEEEEecCCCCCh--HHHHHHHHHHhcCCccEEEecccCCCCCCCccCcccHH
Q 042478 208 STNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIGCTD--ADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSI 280 (954)
Q Consensus 208 GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g~~~--~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~~~d~~ 280 (954)
|| |++|+++|. +.||||+|+|+.||+++..+... ..++++...+..+++||||||||...... ... +.+
T Consensus 116 GT-~vAGiiaa~~n~~g~~GVAp~A~l~~vkv~~~~~~~~~~~~~~~~~~~a~~~~~~Vin~S~G~~~~~~-~~~--~~~ 191 (600)
T 2oxa_A 116 GT-SVSGIIAAVDNAIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNHSYRMSVVDP-RSA--NSL 191 (600)
T ss_dssp HH-HHHHHHHCCSSSSSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTTSHHHHTCSEEEECCCCCCSSC-CCS--CSH
T ss_pred cc-HHHHHhhcccCCCcceEEccCCceEEEeeecCcccchHHHHHHHHhhhhcccCCeEEEEeccCCCCCc-ccc--Cch
Confidence 99 999988776 89999999999999998766432 34455444577889999999999874211 111 222
Q ss_pred HHHHH----H---HHHCCCEEEEeCCCCCCCCC----------------------ccccCCCceEEEcccccCCCcccee
Q 042478 281 AIGSF----H---AIAKGITVVSSAGNDGPVAQ----------------------TIVNTAPWIITVGATTIDRAFPTAI 331 (954)
Q Consensus 281 ~~a~~----~---A~~~Gi~VV~AAGN~G~~~~----------------------t~~~~ap~vitVgAs~~d~~~~~~~ 331 (954)
..++. . +.++|++||+||||+|.... ...+.+||+|+|||+
T Consensus 192 ~~~~~~~~~~~~~a~~~GilvV~AAGN~g~~~~~~~~~~~Pa~~~~~~p~~~~n~~~~~~s~~vItVgA~---------- 261 (600)
T 2oxa_A 192 DQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSNFWNLVVSAL---------- 261 (600)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESCSSCCCSSBTTSSGGGGSSSEEEEEEE----------
T ss_pred hHHHHHHHHHHHHhccCCcEEEEecCCCCccCCCCcceecCccccccccccccccCCcccCceeEEEecc----------
Confidence 22222 2 34789999999999986321 011123334444432
Q ss_pred ecCCCeEEeeeeeeccCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCce
Q 042478 332 TLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGV 411 (954)
Q Consensus 332 ~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~ 411 (954)
T Consensus 262 -------------------------------------------------------------------------------- 261 (600)
T 2oxa_A 262 -------------------------------------------------------------------------------- 261 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEecCCCCCCCCcccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeE
Q 042478 412 GLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDI 491 (954)
Q Consensus 412 gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI 491 (954)
...+.++.||++||+. ||
T Consensus 262 ------------------------------------------------------~~~g~~a~fS~~G~~v--------dv 279 (600)
T 2oxa_A 262 ------------------------------------------------------NADGVRSSYSSVGSNI--------FL 279 (600)
T ss_dssp ------------------------------------------------------CTTSSBCTTCCBCTTE--------EE
T ss_pred ------------------------------------------------------cCCCCcCCcCCCCCCe--------EE
Confidence 2345688999999987 99
Q ss_pred EecCCceEecCCCCCC----------------------------CCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHH
Q 042478 492 VAPGVDILSAYPPIGS----------------------------KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPA 543 (954)
Q Consensus 492 ~APG~~I~sa~~~~~~----------------------------~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~ 543 (954)
+|||++|.+..+.... ...+.|..++|||||||||||++|||+|++|+|+|+
T Consensus 280 ~APG~~i~~~~p~i~ttd~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VAGvaALl~s~~P~lt~~ 359 (600)
T 2oxa_A 280 SATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVR 359 (600)
T ss_dssp EEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHH
T ss_pred EeccCCCCcCCCceEeccccccccccccccccccccccccccccCCcccccccccchHHhHHHHHHHHHHHHhCCCCCHH
Confidence 9999997554432000 011348999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCCCccccc---------------cC---CCCCCCCCCCCCCCccCcccccCCCcccc
Q 042478 544 AIRSALVTTASQTGTDGMNIFE---------------EG---STRKEADPFDIGGGHVNPNKAMNPGLVYD 596 (954)
Q Consensus 544 ~Iks~L~~TA~~~~~~g~pi~~---------------~~---~~~~~~~~~~~GaG~vn~~~Al~pglvyd 596 (954)
+||++|++||++++..+.++.. .+ -......++.||||+||+.+|++.+..|.
T Consensus 360 ~vk~~L~~tA~~~~~~~~~~~~~~~~~~G~~~~~~~~~~w~~n~~g~~~~~~~G~G~vda~~Av~~A~~~~ 430 (600)
T 2oxa_A 360 DLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAANHQ 430 (600)
T ss_dssp HHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHTTCC
T ss_pred HHHHHHHHhCccCCcccccccccccccccccccccccccccccCCCccccccCCCchhhHHHHHHHHHhcc
Confidence 9999999999988755432210 00 01122245789999999999998554443
No 36
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...
Probab=100.00 E-value=1.1e-42 Score=380.42 Aligned_cols=227 Identities=28% Similarity=0.333 Sum_probs=192.5
Q ss_pred cccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhhh
Q 042478 132 LSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNT 211 (954)
Q Consensus 132 ~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa~ 211 (954)
.|.. .+|+||+|||||||||++||+|.+... ..++|..+..+.+|||| |
T Consensus 24 ~~~~-~~G~gv~VaViDsGvd~~H~~l~~~~~-----------------------------~~~~~~~~~~d~~gHGT-~ 72 (279)
T 2pwa_A 24 YYDE-SAGQGSCVYVIDTGIEASHPEFEGRAQ-----------------------------MVKTYYYSSRDGNGHGT-H 72 (279)
T ss_dssp ECCT-TTTTTEEEEEEESCCCTTCGGGTTCEE-----------------------------EEEESSSCSSCSSSHHH-H
T ss_pred cccC-CCCCCCEEEEEeCCCCCCChhHhCccc-----------------------------cccCCCCCCCCCCCCHH-H
Confidence 4543 789999999999999999999974311 11222222223348999 9
Q ss_pred ccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCCc-------cEEEecccCCCCCCCccCcccHHHHH
Q 042478 212 DEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV-------DVLSVSIGNEIPLFSYIDQRDSIAIG 283 (954)
Q Consensus 212 v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dgv-------dVINlSlG~~~~~~~~~~~~d~~~~a 283 (954)
++|+++|...||||+|+|+.+|++++.+ ++.+++++||+||+++++ +|||||||... . +.+..+
T Consensus 73 vAgiia~~~~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~~--~------~~~~~a 144 (279)
T 2pwa_A 73 CAGTVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGY--S------SSVNSA 144 (279)
T ss_dssp HHHHHHCTTTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEEC--C------HHHHHH
T ss_pred HHHHHHhcccccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCCC--C------HHHHHH
Confidence 9999999899999999999999998876 788999999999999988 99999999763 2 678889
Q ss_pred HHHHHHCCCEEEEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478 284 SFHAIAKGITVVSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI 362 (954)
Q Consensus 284 ~~~A~~~Gi~VV~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~ 362 (954)
+.++.++|++||+||||+|.+.. ..++..|++|+|||++.
T Consensus 145 i~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------------------------------- 185 (279)
T 2pwa_A 145 AARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR--------------------------------------- 185 (279)
T ss_dssp HHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------------------------------
T ss_pred HHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC---------------------------------------
Confidence 99999999999999999997643 35677899999998531
Q ss_pred ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478 363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI 442 (954)
Q Consensus 363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l 442 (954)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478 443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS 522 (954)
Q Consensus 443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA 522 (954)
.+.++.||+|||.+ ||+|||++|+++++. +.|..++|||||
T Consensus 186 -------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~------~~~~~~sGTS~A 226 (279)
T 2pwa_A 186 -------------------------YDRRSSFSNYGSVL--------DIFGPGTDILSTWIG------GSTRSISGTSMA 226 (279)
T ss_dssp -------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEEETT------TEEEEECSHHHH
T ss_pred -------------------------CCCcCCcCCCCCcc--------eEEEecCCeEEeecC------CCEEEcCChHHH
Confidence 13467899999965 999999999999987 689999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478 523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT 556 (954)
Q Consensus 523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~ 556 (954)
||||||++|||+|+ |+++|.+||++|++||++.
T Consensus 227 aP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~ 259 (279)
T 2pwa_A 227 TPHVAGLAAYLMTL-GKTTAASACRYIADTANKG 259 (279)
T ss_dssp HHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEES
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccc
Confidence 99999999999999 9999999999999999964
No 37
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}
Probab=100.00 E-value=2.2e-42 Score=377.98 Aligned_cols=236 Identities=28% Similarity=0.318 Sum_probs=199.4
Q ss_pred CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceecccc-CCCCCCC
Q 042478 128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIK-GIMDMIN 206 (954)
Q Consensus 128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~-~~~~~~G 206 (954)
+...+|..+.+|+||+|||||||||++||+|.++... .++|.. ...+.+|
T Consensus 19 ~~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~~~~-----------------------------~~~~~~~~~~d~~g 69 (276)
T 4dzt_A 19 PLSNSYTYTATGRGVNVYVIDTGIRTTHREFGGRARV-----------------------------GYDALGGNGQDCNG 69 (276)
T ss_dssp SCCSCEECSCCCTTCEEEEEESCCCTTCGGGTTCEEE-----------------------------EEETTSSCSCCSSS
T ss_pred CcccceecCCCCCCcEEEEEccCCCCCChhHccCeec-----------------------------cccCCCCCCCCCCC
Confidence 3567899999999999999999999999999743211 111111 1222338
Q ss_pred chhhhccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC--CccEEEecccCCCCCCCccCcccHHHHH
Q 042478 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD--GVDVLSVSIGNEIPLFSYIDQRDSIAIG 283 (954)
Q Consensus 207 ~GTa~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d--gvdVINlSlG~~~~~~~~~~~~d~~~~a 283 (954)
||| |++|+++|...||||+|+|+.+|++++.+ +..+++++||+|++++ +++|||||||... . ..+..+
T Consensus 70 HGT-~vAgiiag~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~--~------~~~~~a 140 (276)
T 4dzt_A 70 HGT-HVAGTIGGVTYGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV--S------TALDNA 140 (276)
T ss_dssp HHH-HHHHHHHCTTTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--C------HHHHHH
T ss_pred CHH-HHHHHHHccccCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC--C------HHHHHH
Confidence 999 99999999889999999999999998776 7889999999999987 9999999999864 2 678889
Q ss_pred HHHHHHCCCEEEEeCCCCCCCCCcc-ccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478 284 SFHAIAKGITVVSSAGNDGPVAQTI-VNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI 362 (954)
Q Consensus 284 ~~~A~~~Gi~VV~AAGN~G~~~~t~-~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~ 362 (954)
+.++.++|+++|+||||+|...... ++..|++|+|||++.
T Consensus 141 ~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------------------------------- 181 (276)
T 4dzt_A 141 VKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS--------------------------------------- 181 (276)
T ss_dssp HHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------------------------------
T ss_pred HHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC---------------------------------------
Confidence 9999999999999999999765443 677889999998431
Q ss_pred ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478 363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI 442 (954)
Q Consensus 363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l 442 (954)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478 443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS 522 (954)
Q Consensus 443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA 522 (954)
.+.++.||++||.. ||+|||++|+++++.. ...|..++|||||
T Consensus 182 -------------------------~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~----~~~~~~~sGTS~A 224 (276)
T 4dzt_A 182 -------------------------SDARASFSNYGSCV--------DLFAPGASIPSAWYTS----DTATQTLNGTSMA 224 (276)
T ss_dssp -------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTS----SSCEEEECSHHHH
T ss_pred -------------------------CCCcCCcCCCCCCc--------eEEeCCCCeEccccCC----CCceEEeeEHHHH
Confidence 23467899999976 9999999999998762 2579999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 042478 523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTG 557 (954)
Q Consensus 523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~ 557 (954)
||||||++|||+|++|+++|++||++|++||++..
T Consensus 225 aP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 259 (276)
T 4dzt_A 225 TPHVAGVAALYLEQNPSATPASVASAILNGATTGR 259 (276)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCc
Confidence 99999999999999999999999999999999754
No 38
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}
Probab=100.00 E-value=5.8e-42 Score=374.81 Aligned_cols=234 Identities=30% Similarity=0.329 Sum_probs=196.2
Q ss_pred ccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccC---CCCCC
Q 042478 129 SKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG---IMDMI 205 (954)
Q Consensus 129 ~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~---~~~~~ 205 (954)
...+|..+.+|+||+|||||||||++||+|.++.. .+++|.++ ..+.+
T Consensus 20 ~~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~-----------------------------~~~d~~~~~~~~~d~~ 70 (278)
T 2b6n_A 20 LDNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGRAS-----------------------------SGYDFIDNDYDATDCN 70 (278)
T ss_dssp CCSEEECSCCCTTCEEEEEESCCCTTCGGGTTCEE-----------------------------EEEETTTTBSCCCCSS
T ss_pred cchhcccCCCCCCCEEEEEeCCCCCCChhHhcccc-----------------------------cCeecCCCCCCCCCCC
Confidence 45789999999999999999999999999974311 11112111 11223
Q ss_pred CchhhhccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhc--CCccEEEecccCCCCCCCccCcccHHHH
Q 042478 206 NASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIH--DGVDVLSVSIGNEIPLFSYIDQRDSIAI 282 (954)
Q Consensus 206 G~GTa~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~--dgvdVINlSlG~~~~~~~~~~~~d~~~~ 282 (954)
|||| |++|+++|...||||+|+|+.+|++++.+ +..+++++||+|+++ .|++|||||||... . ..+..
T Consensus 71 gHGT-~vAgiia~~~~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~--~------~~~~~ 141 (278)
T 2b6n_A 71 GHGT-HVAGTIGGSTYGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA--S------QATDD 141 (278)
T ss_dssp SHHH-HHHHHHHCTTTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--C------HHHHH
T ss_pred CcHH-HHHHHHHCCCcCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc--C------HHHHH
Confidence 8999 99999988889999999999999998766 788999999999997 59999999999864 2 66788
Q ss_pred HHHHHHHCCCEEEEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccc
Q 042478 283 GSFHAIAKGITVVSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSER 361 (954)
Q Consensus 283 a~~~A~~~Gi~VV~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~ 361 (954)
++.++.++|++||+||||+|.+.. ..++..|++|+|||++.
T Consensus 142 ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------------------------------- 183 (278)
T 2b6n_A 142 AVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS-------------------------------------- 183 (278)
T ss_dssp HHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------------------------------------
T ss_pred HHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC--------------------------------------
Confidence 889999999999999999997643 34677899999998531
Q ss_pred cccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHH
Q 042478 362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQ 441 (954)
Q Consensus 362 ~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~ 441 (954)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCc
Q 042478 442 ILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSM 521 (954)
Q Consensus 442 l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSM 521 (954)
.+.++.||++||.. ||+|||++|+++++.. .+.|..++||||
T Consensus 184 --------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~----~~~~~~~sGTS~ 225 (278)
T 2b6n_A 184 --------------------------NDSRSSFSNYGTCL--------DIYAPGSSITSSWYTS----NSATNTISGTSM 225 (278)
T ss_dssp --------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTS----TTCEEEECSHHH
T ss_pred --------------------------CCCcCCcCCCCCCC--------eEEeCCCCeECcccCC----CCCEEEeCcHHH
Confidence 13467899999865 9999999999998752 267999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478 522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT 556 (954)
Q Consensus 522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~ 556 (954)
|||||||++|||+|++|++++++||++|++||++.
T Consensus 226 AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 226 ASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 99999999999999999999999999999999864
No 39
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A
Probab=100.00 E-value=1e-41 Score=373.29 Aligned_cols=229 Identities=27% Similarity=0.309 Sum_probs=194.2
Q ss_pred ccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhh
Q 042478 131 NLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTN 210 (954)
Q Consensus 131 ~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa 210 (954)
..|... +|+||+|||||||||++||+|.+... ..+.|..+..+.+||||
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~~~-----------------------------~~~~~~~~~~d~~gHGT- 72 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGRAK-----------------------------QIKSYASTARDGHGHGT- 72 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTCEE-----------------------------EEEECSSSSSCSSSHHH-
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccccc-----------------------------cccCCCCCCCCCCCcHH-
Confidence 566666 99999999999999999999974321 11222222223348999
Q ss_pred hccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcCC-------ccEEEecccCCCCCCCccCcccHHHH
Q 042478 211 TDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDG-------VDVLSVSIGNEIPLFSYIDQRDSIAI 282 (954)
Q Consensus 211 ~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~dg-------vdVINlSlG~~~~~~~~~~~~d~~~~ 282 (954)
|++|+++|...||||+|+|+.+|+++..+ ++.+++++||+|+++++ ++|||||||... . +.+..
T Consensus 73 ~vAgii~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~~--~------~~~~~ 144 (279)
T 3f7m_A 73 HCAGTIGSKTWGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGY--S------AALNQ 144 (279)
T ss_dssp HHHHHHHCTTTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEEC--C------HHHHH
T ss_pred HHHHHHhcCccccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcCc--c------HHHHH
Confidence 99999999889999999999999998776 78899999999999986 899999999763 2 67888
Q ss_pred HHHHHHHCCCEEEEeCCCCCCCCCc-cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeeccc
Q 042478 283 GSFHAIAKGITVVSSAGNDGPVAQT-IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSER 361 (954)
Q Consensus 283 a~~~A~~~Gi~VV~AAGN~G~~~~t-~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~ 361 (954)
++.++.++|++||+||||+|.+... .++..|++|+|||++.
T Consensus 145 a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------------------------------- 186 (279)
T 3f7m_A 145 AAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS-------------------------------------- 186 (279)
T ss_dssp HHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------------------------------------
T ss_pred HHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC--------------------------------------
Confidence 9999999999999999999976443 3677899999998431
Q ss_pred cccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHH
Q 042478 362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQ 441 (954)
Q Consensus 362 ~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~ 441 (954)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCc
Q 042478 442 ILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSM 521 (954)
Q Consensus 442 l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSM 521 (954)
.+.++.||++||.. ||+|||++|+++++. +.|..++||||
T Consensus 187 --------------------------~~~~~~~S~~g~~~--------di~ApG~~i~s~~~~------~~~~~~sGTS~ 226 (279)
T 3f7m_A 187 --------------------------NDVRSTFSNYGRVV--------DIFAPGTSITSTWIG------GRTNTISGTSM 226 (279)
T ss_dssp --------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECGG------GCEEEECSHHH
T ss_pred --------------------------CCCCCCCCCCCCCC--------eEEECCCCeEeecCC------CCEEEeeEHHH
Confidence 23467899999965 999999999999986 78999999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCC
Q 042478 522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTG 557 (954)
Q Consensus 522 AaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~ 557 (954)
|||||||++|||+|++|+ +|++||++|++||++..
T Consensus 227 AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 227 ATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp HHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 999999999999999999 99999999999999653
No 40
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1
Probab=100.00 E-value=2.2e-41 Score=396.77 Aligned_cols=290 Identities=16% Similarity=0.121 Sum_probs=209.0
Q ss_pred CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceecccc-CCCCCCC
Q 042478 128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIK-GIMDMIN 206 (954)
Q Consensus 128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~-~~~~~~G 206 (954)
++..+|..+++|+||+|||||||||++||+|.++... ...| +|....-+ .... ...+.+|
T Consensus 26 ~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~~----~~~~--------d~~~~~~~-------p~~~~~~~d~~g 86 (471)
T 1p8j_A 26 NVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDP----GASF--------DVNDQDPD-------PQPRYTQMNDNR 86 (471)
T ss_dssp CCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCG----GGCE--------ETTTTBSC-------CCCCCCTTCTTC
T ss_pred ChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccCc----cCcc--------cccCCCCC-------CCCccCCCCCCC
Confidence 4778999999999999999999999999999754211 0001 11000000 0000 0112238
Q ss_pred chhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc-CCccEEEecccCCCCCCCccCcccH
Q 042478 207 ASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH-DGVDVLSVSIGNEIPLFSYIDQRDS 279 (954)
Q Consensus 207 ~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~-dgvdVINlSlG~~~~~~~~~~~~d~ 279 (954)
||| |++|++++. +.||||+|+|+.+|+++ +..+++++|+++|++ ++++|||||||..............
T Consensus 87 HGT-~vAGiiaa~~~n~~g~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~~~~~~~~~~ 162 (471)
T 1p8j_A 87 HGT-RCAGEVAAVANNGVCGVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARL 162 (471)
T ss_dssp HHH-HHHHHHHCCSSSSSSCCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCBCCCHH
T ss_pred cHH-HHHHHHHeeccCCCCCEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEEEeccCcCCCCCcccCcHHH
Confidence 999 999987663 58999999999999995 456789999999999 9999999999986411101111134
Q ss_pred HHHHHHHHHH-----CCCEEEEeCCCCCCCCCc----cccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcC
Q 042478 280 IAIGSFHAIA-----KGITVVSSAGNDGPVAQT----IVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVS 350 (954)
Q Consensus 280 ~~~a~~~A~~-----~Gi~VV~AAGN~G~~~~t----~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~ 350 (954)
+..++.++++ +|++||+||||+|..... ....+|++|+|||++.
T Consensus 163 ~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~--------------------------- 215 (471)
T 1p8j_A 163 AEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ--------------------------- 215 (471)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT---------------------------
T ss_pred HHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC---------------------------
Confidence 5556666654 699999999999975322 1234589999998542
Q ss_pred CceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccc
Q 042478 351 HGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIP 430 (954)
Q Consensus 351 ~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip 430 (954)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCC
Q 042478 431 CIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDI 510 (954)
Q Consensus 431 ~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 510 (954)
.+.++.||++||.. ....+|+..+||.+|+++.+. +
T Consensus 216 -------------------------------------~g~~a~~S~~g~~~--~~~~~~~~~~~g~~i~st~~~-----~ 251 (471)
T 1p8j_A 216 -------------------------------------FGNVPWYSEACSST--LATTYSSGNQNEKQIVTTDLR-----Q 251 (471)
T ss_dssp -------------------------------------TSCCCTTCCBCTTC--CEEEECCCSTTSCCEEEEETT-----T
T ss_pred -------------------------------------CCCcccccCCCCcc--eEEeCCCCCCCCCCEEEeeCC-----C
Confidence 13467899999986 333445555566799999875 2
Q ss_pred CceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCccccccCCCCCCCCCCCCCCCccCcccccC
Q 042478 511 QGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590 (954)
Q Consensus 511 ~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~~~~~~~~~~~~~GaG~vn~~~Al~ 590 (954)
+.|..++|||||||||||++|||+|++|+|++++||++|++||++.+.....+... .........||+|+||+.+|++
T Consensus 252 ~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n--~~g~~~~~~~G~G~vda~~Av~ 329 (471)
T 1p8j_A 252 KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN--GVGRKVSHSYGYGLLDAGAMVA 329 (471)
T ss_dssp EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC--TTSCEEBTTTBTCBCCHHHHHH
T ss_pred CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceec--CCCcccCCCCCCEEEcHhHHHH
Confidence 57999999999999999999999999999999999999999999876443222211 1112245689999999999998
Q ss_pred CCc
Q 042478 591 PGL 593 (954)
Q Consensus 591 pgl 593 (954)
...
T Consensus 330 ~a~ 332 (471)
T 1p8j_A 330 LAQ 332 (471)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 41
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Probab=100.00 E-value=3e-41 Score=392.92 Aligned_cols=246 Identities=22% Similarity=0.228 Sum_probs=187.3
Q ss_pred ccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCchhh
Q 042478 131 NLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTN 210 (954)
Q Consensus 131 ~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~GTa 210 (954)
..|..+.+|+||+|||||||||++||+|.++... ..|+...+ . .+..|.....+.+||||
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~~~-----~~~~~v~~--~------------dg~~f~~~~~D~~GHGT- 76 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMV-----TDFENVPE--E------------DGTRFHRQASKCDSHGT- 76 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTEEE-----EEEECCCC--C------------C-------CTTTTHHHH-
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHcccccc-----cCcccccC--C------------CCccccCCCCCCCChHH-
Confidence 3788899999999999999999999999754210 00100000 0 00011111222338999
Q ss_pred hccccccccceeccCCCcEEEEEEecCCC-CChHHHHHHHHHHhcC------CccEEEecccCCCCCCCccCcccHHHHH
Q 042478 211 TDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD------GVDVLSVSIGNEIPLFSYIDQRDSIAIG 283 (954)
Q Consensus 211 ~v~G~a~G~~~GvAP~A~L~~yKv~~~~g-~~~~dil~Aid~Ai~d------gvdVINlSlG~~~~~~~~~~~~d~~~~a 283 (954)
|++|+++|...||||+|+|+.+|++++.| ++.+++++||+|++++ +++|||||||+.. . ..+..+
T Consensus 77 hVAGIIag~~~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~~--s------~~l~~A 148 (546)
T 2qtw_B 77 HLAGVVSGRDAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY--S------RVLNAA 148 (546)
T ss_dssp HHHHHHHCTTTCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEEC--C------HHHHHH
T ss_pred HHHHHHhccCCCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCCC--c------HHHHHH
Confidence 99999999889999999999999998776 7788999999999974 9999999999753 2 678889
Q ss_pred HHHHHHCCCEEEEeCCCCCCCCC-ccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCceeeeeecccc
Q 042478 284 SFHAIAKGITVVSSAGNDGPVAQ-TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERI 362 (954)
Q Consensus 284 ~~~A~~~Gi~VV~AAGN~G~~~~-t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~~l~~~~~~ 362 (954)
+.+|.++|++||+||||+|.+.. ..++..|++|+|||++.+...
T Consensus 149 i~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~----------------------------------- 193 (546)
T 2qtw_B 149 CQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP----------------------------------- 193 (546)
T ss_dssp HHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-----------------------------------
T ss_pred HHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-----------------------------------
Confidence 99999999999999999997643 346778999999986532100
Q ss_pred ccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEeehhhHHHH
Q 042478 363 AFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQI 442 (954)
Q Consensus 363 ~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i~~~~g~~l 442 (954)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478 443 LSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS 522 (954)
Q Consensus 443 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA 522 (954)
...-..||++||. |||+|||++|+++++.. ++.|..++|||||
T Consensus 194 -------------------------a~~s~~fSn~G~~--------vDI~APG~~I~St~~~~----~~~y~~~SGTSmA 236 (546)
T 2qtw_B 194 -------------------------VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDC----STCFVSQSGTSQA 236 (546)
T ss_dssp -------------------------CEETTEECCBSTT--------CCEEEECSSEEEECTTS----TTCEEEECSHHHH
T ss_pred -------------------------ccccCCcCCCCCc--------ceEEecCccEEeeccCC----CCcEeeeCcCcHH
Confidence 0000138999985 49999999999999862 2579999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccC
Q 042478 523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT 556 (954)
Q Consensus 523 aP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~ 556 (954)
||||||++|||+|++|+|+|+|||++|++||.+.
T Consensus 237 AP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~ 270 (546)
T 2qtw_B 237 AAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 270 (546)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEES
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999864
No 42
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*
Probab=100.00 E-value=1.7e-40 Score=391.99 Aligned_cols=277 Identities=18% Similarity=0.137 Sum_probs=209.3
Q ss_pred CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCC------
Q 042478 128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGI------ 201 (954)
Q Consensus 128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~------ 201 (954)
++..+|..+++|+||+|||||||||++||+|.++... . +.++|..+.
T Consensus 42 ~~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~~---------~------------------~~~d~~~~~~~~~p~ 94 (503)
T 2id4_A 42 NVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA---------E------------------GSWDFNDNTNLPKPR 94 (503)
T ss_dssp CCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG---------G------------------GCEETTTTBSCCCCC
T ss_pred ChHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcccc---------c------------------CcccCCCCCCCCCCC
Confidence 4678999999999999999999999999999764221 0 011111111
Q ss_pred CCCCCchhhhcccccccc------ceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhcCCccEEEecccCCCCCCCccC
Q 042478 202 MDMINASTNTDEGLAAGL------ARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYID 275 (954)
Q Consensus 202 ~~~~G~GTa~v~G~a~G~------~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~dgvdVINlSlG~~~~~~~~~~ 275 (954)
.+.+|||| |++|++++. ..||||+|+|+.+|+++.. ++..++++||+||++++ ||||||||..........
T Consensus 95 ~d~~gHGT-~vAGiiaa~~~n~~~~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~~~~~~ 171 (503)
T 2id4_A 95 LSDDYHGT-RCAGEIAAKKGNNFCGVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSWGPADDGRHLQG 171 (503)
T ss_dssp STTTTHHH-HHHHHHHCCSSSSSSCCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECEESCCSSSCCBC
T ss_pred CCCCChHH-HHHHHHHhccCCCCCcEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeCCCcCCCCccccC
Confidence 12238999 999987664 4899999999999999643 67889999999999998 999999998642110111
Q ss_pred cccHHHHHHHHHH-----HCCCEEEEeCCCCCCCCCc--cc--cCCCceEEEcccccCCCccceeecCCCeEEeeeeeec
Q 042478 276 QRDSIAIGSFHAI-----AKGITVVSSAGNDGPVAQT--IV--NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDI 346 (954)
Q Consensus 276 ~~d~~~~a~~~A~-----~~Gi~VV~AAGN~G~~~~t--~~--~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~ 346 (954)
....+..++.+|. .+|++||+||||+|..... .+ ..++++|+|||++.
T Consensus 172 ~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~----------------------- 228 (503)
T 2id4_A 172 PSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH----------------------- 228 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT-----------------------
T ss_pred chHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC-----------------------
Confidence 1145667777776 4799999999999965322 22 24678999998532
Q ss_pred cCcCCceeeeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCC
Q 042478 347 GKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSC 426 (954)
Q Consensus 347 ~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~ 426 (954)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEeehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEe----cCCceEecC
Q 042478 427 NLIPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVA----PGVDILSAY 502 (954)
Q Consensus 427 ~~ip~~~i~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~A----PG~~I~sa~ 502 (954)
.+.++.||++||.. |++| ||.+|++++
T Consensus 229 -----------------------------------------~~~~a~~S~~g~~~--------~~~a~~~gpG~~I~st~ 259 (503)
T 2id4_A 229 -----------------------------------------KDLHPPYSEGCSAV--------MAVTYSSGSGEYIHSSD 259 (503)
T ss_dssp -----------------------------------------TSCCCTTCCCCTTE--------EEEEECSBTTBCEEEEC
T ss_pred -----------------------------------------CCCcCCcCCCCCcc--------eEeecCCCCCCceEeec
Confidence 13467899999987 8888 899999995
Q ss_pred CCCCCCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCC-CccccccCCCCCCCCCCCCCCC
Q 042478 503 PPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTD-GMNIFEEGSTRKEADPFDIGGG 581 (954)
Q Consensus 503 ~~~~~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~-g~pi~~~~~~~~~~~~~~~GaG 581 (954)
.. ++.|..++|||||||||||++|||+|++|+|++++||++|+.||++++.. ...+... .........||+|
T Consensus 260 ~~-----~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~--~~g~~~~~~~G~G 332 (503)
T 2id4_A 260 IN-----GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDS--AMGKKYSHRYGFG 332 (503)
T ss_dssp ST-----TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEEC--SSSSEEBTTTBTC
T ss_pred CC-----CCceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceec--CCCCccCcccCCc
Confidence 54 26899999999999999999999999999999999999999999987543 1111111 1112235689999
Q ss_pred ccCcccccCCCc
Q 042478 582 HVNPNKAMNPGL 593 (954)
Q Consensus 582 ~vn~~~Al~pgl 593 (954)
+||+.+|++...
T Consensus 333 ~vda~~Av~~a~ 344 (503)
T 2id4_A 333 KIDAHKLIEMSK 344 (503)
T ss_dssp BCCHHHHHHHHT
T ss_pred EecHHHHHHHHh
Confidence 999999998443
No 43
>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}
Probab=100.00 E-value=7.7e-39 Score=386.91 Aligned_cols=313 Identities=18% Similarity=0.087 Sum_probs=197.4
Q ss_pred CccccccCCCCCCceEEEEEeCCCCCCCCCcCCCCCCCCCCCCCcccccccCCCCCCCCCCccccceeccccCCCCCCCc
Q 042478 128 SSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINA 207 (954)
Q Consensus 128 ~~~~~w~~~~~G~GVvVgVIDTGId~~Hp~f~d~~~~~~~~p~~~~g~~~~~~~f~~~~cn~kiiga~~~~~~~~~~~G~ 207 (954)
++..+|..+++|+||+|||||||||++||+|.++... ..+ +|. + .........+.+||
T Consensus 58 nv~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~~~-----~~~--------~~~----~-----~~~dp~p~~~~~gH 115 (600)
T 3hjr_A 58 NLWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNVRP-----GSK--------NVV----T-----GSDDPTPTDPDTAH 115 (600)
T ss_dssp CCHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGBCS-----CCB--------CTT----T-----SSSCCCCCSTTCCH
T ss_pred CHHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcccc-----Ccc--------eee----c-----CCCCCCCCCCCCCh
Confidence 4678999999999999999999999999999754221 000 000 0 00000001122389
Q ss_pred hhhhcccccccc-----ceeccCCCcEEEEEEecCCC-CChHHHHHHH-HHHhcCCccEEEecccCCCCCCCccCcccH-
Q 042478 208 STNTDEGLAAGL-----ARGGAPLAHLAIYKACWDIG-CTDADVLKAF-DKAIHDGVDVLSVSIGNEIPLFSYIDQRDS- 279 (954)
Q Consensus 208 GTa~v~G~a~G~-----~~GvAP~A~L~~yKv~~~~g-~~~~dil~Ai-d~Ai~dgvdVINlSlG~~~~~~~~~~~~d~- 279 (954)
|| |++|++++. +.||||+|+|+.||++++.+ +..++++.|+ +++..++++|||+|||...... ... ...
T Consensus 116 GT-hVAGiIAa~~n~~g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~~-~~~-~~~~ 192 (600)
T 3hjr_A 116 GT-SVSGIIAAVDNAIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDP-RSA-NSLD 192 (600)
T ss_dssp HH-HHHHHHHCCSSSSSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSSC-CCS-CSHH
T ss_pred HH-HHHHHHhEeCCCCCcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccccCC-ccC-Ccch
Confidence 99 999987653 68999999999999998775 6677777776 6778899999999999764222 111 012
Q ss_pred ---HHHHHHHH--HHCCCEEEEeCCCCCCCCCccccCCCceEEEcccccCCCccceeecCCCeEEeeeeeeccCcCCcee
Q 042478 280 ---IAIGSFHA--IAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT 354 (954)
Q Consensus 280 ---~~~a~~~A--~~~Gi~VV~AAGN~G~~~~t~~~~ap~vitVgAs~~d~~~~~~~~lg~~~~~~g~s~~~~~~~~~~~ 354 (954)
+..++..+ ..+|+++|+||||.+....... . .+.+.. ++
T Consensus 193 ~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~-----~-~~~~~g------------~~------------------ 236 (600)
T 3hjr_A 193 QSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG-----Y-VLNRTG------------NG------------------ 236 (600)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT-----E-EEEEES------------SC------------------
T ss_pred hhhHHHHHHHhhhccCCcEEEEeccCccccccccc-----c-ccccCC------------CC------------------
Confidence 22222222 2579999999999873211000 0 000000 00
Q ss_pred eeeeccccccCCCCCCccCCCCCCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCCCCCCcccceEEe
Q 042478 355 GLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKV 434 (954)
Q Consensus 355 ~l~~~~~~~~~~~~~~~C~~~~~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~~~~~~~ip~~~i 434 (954)
.......|.... +...
T Consensus 237 ----------~~~~~~~~~~d~--~~~~---------------------------------------------------- 252 (600)
T 3hjr_A 237 ----------PKLPFENSNLDP--SNSN---------------------------------------------------- 252 (600)
T ss_dssp ----------CCCCSSBTTSSG--GGGS----------------------------------------------------
T ss_pred ----------CCCCcccccccC--cccc----------------------------------------------------
Confidence 000000111000 0000
Q ss_pred ehhhHHHHHHHHhhcCCCccccCCCceeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceE--------ecCCCCC
Q 042478 435 NYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDIL--------SAYPPIG 506 (954)
Q Consensus 435 ~~~~g~~l~~~~~s~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~--------sa~~~~~ 506 (954)
....++......+.++.||++|+.. +++|||.++. ...++..
T Consensus 253 ----------------------~~~IsVgA~~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~~pG~~ 302 (600)
T 3hjr_A 253 ----------------------FWNLVVSALNADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCD 302 (600)
T ss_dssp ----------------------SSEEEEEEECTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEEECCSSTT
T ss_pred ----------------------CcceEEeeecCCCCEeecccCCcce--------eeccCCCCCCCCCcceeeecCCCcc
Confidence 0001112234557789999999987 8999987632 2121110
Q ss_pred --------------------CCCCCceEeecCCCchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccCCCCCcccccc
Q 042478 507 --------------------SKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEE 566 (954)
Q Consensus 507 --------------------~~~~~~y~~~SGTSMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~~~~~~g~pi~~~ 566 (954)
......|..++|||||||||||++|||+|+||+|+|+|||++|++||++++..+.|+...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~ 382 (600)
T 3hjr_A 303 MGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVS 382 (600)
T ss_dssp SSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEE
T ss_pred ccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCccccc
Confidence 001356899999999999999999999999999999999999999999998777664311
Q ss_pred C---------------C---CCCCCCCCCCCCCccCcccccCCCccc
Q 042478 567 G---------------S---TRKEADPFDIGGGHVNPNKAMNPGLVY 595 (954)
Q Consensus 567 ~---------------~---~~~~~~~~~~GaG~vn~~~Al~pglvy 595 (954)
. - .....-...||+|+||+.+|++.+..+
T Consensus 383 ~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~~w 429 (600)
T 3hjr_A 383 YTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAANH 429 (600)
T ss_dssp EECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHTTC
T ss_pred ccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhhcC
Confidence 0 0 011112457999999999999754433
No 44
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=99.97 E-value=9.9e-32 Score=236.18 Aligned_cols=88 Identities=25% Similarity=0.393 Sum_probs=83.2
Q ss_pred CCCCccceeeecCCCCCCccccccceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEE
Q 042478 783 SSTPRFLTVIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEIT 862 (954)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~ 862 (954)
++||+ ||+|.. +++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||
T Consensus 5 ~~M~p-----k~~p~~----------~~~ikL~v~aG~A~p~pplgPaLG~~Glni~~f~k~fn~~T~~~kG~~ipV~it 69 (92)
T 1wib_A 5 SSGPP-----KFDPNE----------VKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLT 69 (92)
T ss_dssp CCCCC-----CCCSSS----------CEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHTTTTTTSEEEEEEE
T ss_pred ccCCC-----CCCCCe----------EEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 56777 777655 899999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEEeCCCHHHHHHHHhC
Q 042478 863 VYDDRSFTFILKTPPASVLLLKAAG 887 (954)
Q Consensus 863 v~~dr~~~~~~~~p~~s~li~k~~~ 887 (954)
|| ||+|+|++ +||+|+||+|++|
T Consensus 70 v~-drsf~~~v-~PpaS~Ll~k~~~ 92 (92)
T 1wib_A 70 IQ-NRQAQIEV-VPSASALSGPSSG 92 (92)
T ss_dssp EE-TTEEECCB-CSCCCCCCCCSCC
T ss_pred Ee-CCeeEEEE-cCCHHHHHHHhcC
Confidence 99 99999999 9999999999875
No 45
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=99.95 E-value=2.1e-28 Score=206.46 Aligned_cols=71 Identities=65% Similarity=1.057 Sum_probs=69.7
Q ss_pred cceeEEEEEEEecCcCCCCCCCCcccCCCCCChhHHHHHHHHHhcCCCCceeeEEEEEeCCCeEEEEEeCC
Q 042478 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTP 876 (954)
Q Consensus 806 ~~~~~~i~l~~~~g~a~~~p~~gp~lg~~gin~~~~~~~~n~~T~~~~g~~i~v~i~v~~dr~~~~~~~~p 876 (954)
|++.++|||+|+||+|+|+|||||+|||+|||+|+||||||++|++|+|++|||+||||+||+|+|++++|
T Consensus 2 k~~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~G~~ipV~Itv~~drsf~~~~ktP 72 (72)
T 3cjs_B 2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTP 72 (72)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHHGGGCSCEEEEEEEEETTSCEEEEECCC
T ss_pred cceEEEEEEEEecCccCCCCCccchhcccCCCHHHHHHHHHHHHhhcCCCeEeEEEEEeCCCeEEEEEcCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999998
No 46
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=99.95 E-value=2.7e-28 Score=208.53 Aligned_cols=76 Identities=58% Similarity=0.890 Sum_probs=73.4
Q ss_pred EEEEEeCCCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccceEEcC
Q 042478 869 FTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDP 944 (954)
Q Consensus 869 ~~~~~~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~~v~~ 944 (954)
|+|++++||+||||+||||+++||++|+++++|+||++||+|||++|++|+++++|+++||+|+||||||||+|++
T Consensus 1 f~f~~ktPpas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi~V~~ 76 (76)
T 1hc8_A 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVEN 76 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSGGGCCCSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred CEEEEcCCCHHHHHHHHhCCCCCCCCCCCcEeeeecHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCeeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999985
No 47
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=99.90 E-value=6.7e-25 Score=182.94 Aligned_cols=67 Identities=60% Similarity=0.904 Sum_probs=66.1
Q ss_pred eCCCHHHHHHHHhCCCCCCCCCCCceeEeecHHHHHHHHHHhCCCCCCcCHHHHHHHHHHhhcccce
Q 042478 874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGI 940 (954)
Q Consensus 874 ~~p~~s~li~k~~~~~~~~~~~~~~~~g~it~~~i~~Ia~~k~~~~~~~~l~~~~k~i~gta~smG~ 940 (954)
|+||+||||+||+|+++||++|+++++|+||++||||||++|++|+++++|+++||+|+||||||||
T Consensus 1 ktPpas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~a~k~I~GTArSmGi 67 (67)
T 1qa6_A 1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGI 67 (67)
T ss_dssp CCSCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGGGCCCSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999998
No 48
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A
Probab=99.89 E-value=8e-24 Score=250.63 Aligned_cols=100 Identities=28% Similarity=0.404 Sum_probs=78.6
Q ss_pred cceeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc---CCccEEEecccCCCCCCCccC-cccHHHHHHHHHHHCCCEE
Q 042478 219 LARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH---DGVDVLSVSIGNEIPLFSYID-QRDSIAIGSFHAIAKGITV 294 (954)
Q Consensus 219 ~~~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~---dgvdVINlSlG~~~~~~~~~~-~~d~~~~a~~~A~~~Gi~V 294 (954)
.+.||||+|+|+.|++. ...+++++||+||++ ++++|||+|||... .. +.. +...+..++..|..+||+|
T Consensus 273 ~~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e-~~-~~~~~~~~~~~~~~~a~~~Gi~v 346 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPE-DS-WAPASIAAMNRAFLDAAALGVTV 346 (552)
T ss_dssp HHHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEG-GG-SCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCc-cc-CCHHHHHHHHHHHHHHHhCCeEE
Confidence 35899999999999984 356789999999998 79999999999874 11 110 0135667777888999999
Q ss_pred EEeCCCCCCCC--------CccccCCCceEEEcccccC
Q 042478 295 VSSAGNDGPVA--------QTIVNTAPWIITVGATTID 324 (954)
Q Consensus 295 V~AAGN~G~~~--------~t~~~~ap~vitVgAs~~d 324 (954)
|+||||+|... ...++..|||++|||++..
T Consensus 347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~ 384 (552)
T 1t1e_A 347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV 384 (552)
T ss_dssp EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred EEecCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence 99999999653 2445778999999997643
No 49
>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*
Probab=99.82 E-value=6.5e-21 Score=215.40 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=80.8
Q ss_pred eeccCCCcEEEEEEecCCCCChHHHHHHHHHHhc-CCccEEEecccCCCCCC--CccCcccHHHHHHHHHHHCCCEEEEe
Q 042478 221 RGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH-DGVDVLSVSIGNEIPLF--SYIDQRDSIAIGSFHAIAKGITVVSS 297 (954)
Q Consensus 221 ~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai~-dgvdVINlSlG~~~~~~--~~~~~~d~~~~a~~~A~~~Gi~VV~A 297 (954)
..+||+|+++.|++.+..+++.++++++|+||++ ++++|||+|||...... ..+. ..+..++..|..+||+||+|
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~--~~~~~~~~~a~~~Gitvv~A 167 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTL--QAEDRIFATAAAQGQTFSVS 167 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHH--HHHHHHHHHHHHTTCEEEEE
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHH--HHHHHHHHHHHhCCcEEEEE
Confidence 4578999999999987656788999999999998 89999999999863100 0111 45677777888999999999
Q ss_pred CCCCCCCCC-------------ccccCCCceEEEcccccC
Q 042478 298 AGNDGPVAQ-------------TIVNTAPWIITVGATTID 324 (954)
Q Consensus 298 AGN~G~~~~-------------t~~~~ap~vitVgAs~~d 324 (954)
|||+|...+ ..++..|||++||+++..
T Consensus 168 sGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 168 SGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp CCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred ECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 999997532 345678999999998754
No 50
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=99.02 E-value=3.1e-10 Score=106.27 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=67.4
Q ss_pred cCCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCc
Q 042478 29 GATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNG 108 (954)
Q Consensus 29 ~~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~ 108 (954)
...++.|||+|++... ......|++|+.+++.+ +....+++|+|++.|+||+++|+++++++|+++|+|.+|+||+
T Consensus 34 ~~ip~~YIV~lk~~~~---~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~ 109 (114)
T 2w2n_P 34 WRLPGTYVVVLKEETH---LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS 109 (114)
T ss_dssp GEEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEE
T ss_pred cCCCCcEEEEECCCCC---HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCc
Confidence 3457899999998642 33456899999998765 3356789999999999999999999999999999999999999
Q ss_pred eeec
Q 042478 109 ILKL 112 (954)
Q Consensus 109 ~~~l 112 (954)
.++.
T Consensus 110 ~v~~ 113 (114)
T 2w2n_P 110 SVFA 113 (114)
T ss_dssp EEEE
T ss_pred eEec
Confidence 8864
No 51
>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*
Probab=98.92 E-value=3.3e-09 Score=124.84 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=63.2
Q ss_pred eeccCCCcEEEEEEecCCCCChHHHHHHHHHHh--cCCccEEEecccCCCCCCCcc-CcccHHHHHHHHHHHCCCEEEEe
Q 042478 221 RGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI--HDGVDVLSVSIGNEIPLFSYI-DQRDSIAIGSFHAIAKGITVVSS 297 (954)
Q Consensus 221 ~GvAP~A~L~~yKv~~~~g~~~~dil~Aid~Ai--~dgvdVINlSlG~~~~~~~~~-~~~d~~~~a~~~A~~~Gi~VV~A 297 (954)
.+++++..++.|-.... +...+.+++.+++.. .+-++|||+|||.... . +. .+...+..++..|..+||.|++|
T Consensus 262 ~a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~-~-~~~~y~~~~~~~~~~~~~~Gitv~~A 338 (544)
T 3edy_A 262 MSAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDED-S-LSSAYIQRVNTELMKAAARGLTLLFA 338 (544)
T ss_dssp HHHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGG-G-SCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCccc-c-cCHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 34555555555533211 112344555555433 3568999999999751 1 11 01134555666788999999999
Q ss_pred CCCCCCCC----------CccccCCCceEEEccccc
Q 042478 298 AGNDGPVA----------QTIVNTAPWIITVGATTI 323 (954)
Q Consensus 298 AGN~G~~~----------~t~~~~ap~vitVgAs~~ 323 (954)
+||+|... ...++..|||++||+++.
T Consensus 339 SGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 339 SGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred cCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 99999642 245578899999999874
No 52
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=98.83 E-value=1e-08 Score=89.65 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=57.3
Q ss_pred CCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCce
Q 042478 30 ATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGI 109 (954)
Q Consensus 30 ~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~ 109 (954)
..++.|||.|++.... . ..|.++++ ..+.++.|+|++ |+||+++|+++++++|+++|+|.+|+||+.
T Consensus 6 ~i~~~YIV~~k~~~~~--~---~~~~~~~~-------~~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~ 72 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKS--C---AKKEDVIS-------EKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKL 72 (80)
T ss_dssp --CCEEEEEECTTCCS--H---HHHHHHHH-------TTTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred cCCCCEEEEECCCCCh--H---HHHHHHHH-------HcCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence 4578999999986421 1 12333322 234689999998 999999999999999999999999999999
Q ss_pred eeccccc
Q 042478 110 LKLHTTR 116 (954)
Q Consensus 110 ~~l~t~~ 116 (954)
++++++.
T Consensus 73 v~~~tt~ 79 (80)
T 3cnq_P 73 YRALSAT 79 (80)
T ss_dssp EEECCC-
T ss_pred EEEeeec
Confidence 9998764
No 53
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=98.63 E-value=4.9e-08 Score=92.47 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=61.3
Q ss_pred CCCceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCce
Q 042478 30 ATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGI 109 (954)
Q Consensus 30 ~~~~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~ 109 (954)
..++.|||.|++... ......|.+++.+.... .....++.|+|++.|+||+++|++++++.|+++|+|.+|++|+.
T Consensus 45 ~Ip~~YIV~~K~~~~---~~~~~~~~~~l~~~~~~-r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~ 120 (124)
T 2qtw_A 45 RLPGTYVVVLKEETH---LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 120 (124)
T ss_dssp EEEEEEEEEECTTCC---HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CCCCCEEEEECCCCC---HHHHHHHHHHHHHHHhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCce
Confidence 347899999998632 22345566666654321 11356899999999999999999999999999999999999998
Q ss_pred eec
Q 042478 110 LKL 112 (954)
Q Consensus 110 ~~l 112 (954)
++.
T Consensus 121 v~a 123 (124)
T 2qtw_A 121 VFA 123 (124)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 54
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=98.47 E-value=4.9e-07 Score=78.17 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=57.5
Q ss_pred ceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEc-cceeEEEEEcCHHHHHHHHcC--CCeeEEEeCce
Q 042478 33 NVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYK-HGFSGFAARLTKTQAEKIAEL--PGVVQVIPNGI 109 (954)
Q Consensus 33 ~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~-~~~nGfs~~l~~~~~~~L~~~--p~V~~V~~~~~ 109 (954)
+.|||.|++.. +......|.+++... +.++.|.|+ ..|+||+++++++++++|+++ |.|.+||+|+.
T Consensus 3 ~sYIV~lk~~~---~~~~~~~~~~~~~~~-------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~ 72 (76)
T 1v5i_B 3 GKFIVIFKNDV---SEDKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHV 72 (76)
T ss_dssp EEEEEEECTTC---CHHHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCE
T ss_pred ceEEEEECCCC---CHHHHHHHHHHHHhh-------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcE
Confidence 68999999853 333456777777654 246899994 799999999999999999999 88999999998
Q ss_pred eec
Q 042478 110 LKL 112 (954)
Q Consensus 110 ~~l 112 (954)
+++
T Consensus 73 v~~ 75 (76)
T 1v5i_B 73 AHA 75 (76)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 55
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=98.45 E-value=4.6e-07 Score=91.97 Aligned_cols=90 Identities=16% Similarity=0.130 Sum_probs=72.1
Q ss_pred CCCccCCCCCCccc-------ccceEEEEecCCCC-chHHHHHHHHHHcCceEEEEEecCC-C-C---C--CCCcccceE
Q 042478 368 SANDCRQGSLNATL-------AAGKIILCFSRPDT-QDIQSAAISVTQAGGVGLIYAQFHT-D-G---L--DSCNLIPCI 432 (954)
Q Consensus 368 ~~~~C~~~~~~~~~-------v~Gkivl~~~~~g~-~~~~~k~~~~~~aGa~gvi~~n~~~-~-~---~--~~~~~ip~~ 432 (954)
....|.+....... .+|||+|++| |. |+|.+|..+++++||.++|+||+.. + . + +....||++
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~R--G~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv 159 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQR--GGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAI 159 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEES--CTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEEC--CCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEE
Confidence 46789886643222 4789999999 99 9999999999999999999999852 1 1 1 233579999
Q ss_pred EeehhhHHHHHHHHhhcCCCccccCCC
Q 042478 433 KVNYEVGTQILSYIRRARSPIAKLSSP 459 (954)
Q Consensus 433 ~i~~~~g~~l~~~~~s~~~~~~~i~~~ 459 (954)
+|+..+|+.|++++..+...+.+|...
T Consensus 160 ~Is~~~G~~L~~~L~~G~~Vtvti~vg 186 (194)
T 3icu_A 160 MIGNLKGTKILQSIQRGIQVTMVIEVG 186 (194)
T ss_dssp EECHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EECHHHHHHHHHHHHCCCeEEEEEECC
Confidence 999999999999999887776666543
No 56
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=97.00 E-value=0.0011 Score=55.07 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=50.2
Q ss_pred ceEEEEEcCCCCCCchhchhhHHHHHHHHhCccccccccEEEEEccceeEEEEEcCHHHHHHHHcCCCeeEEEeCceeec
Q 042478 33 NVHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKL 112 (954)
Q Consensus 33 ~~yIV~l~~~~~~~~~~~~~~h~~~l~s~~~~~~~~~~~i~~~y~~~~nGfs~~l~~~~~~~L~~~p~V~~V~~~~~~~l 112 (954)
-+|||.+++.. ... ......+.++.|+|. .+++++++|+++.++.|+++|+|.+|++|...+.
T Consensus 2 ~~~IV~f~~~~-~~~---------------~~i~~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a 64 (65)
T 2z30_B 2 IRVIVSVDKAK-FNP---------------HEVLGIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL 64 (65)
T ss_dssp EEEEEEECGGG-CCG---------------GGGGGGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred eeEEEEEcCcc-hhH---------------HHHHHCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence 37999998641 100 012445778999997 8999999999999999999999999999988753
No 57
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=96.36 E-value=0.0077 Score=68.95 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=58.4
Q ss_pred CCcccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC----C--CCCcccceEEeehhhHHHHHHHHh
Q 042478 377 LNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG----L--DSCNLIPCIKVNYEVGTQILSYIR 447 (954)
Q Consensus 377 ~~~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~----~--~~~~~ip~~~i~~~~g~~l~~~~~ 447 (954)
+...+++|||||+.+ |.|.|..|..+++++||.|+|++++.... . .....+|...++.++++.|+..+.
T Consensus 108 ~~~~dv~GkIvlv~~--g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 108 VAGKDLNGKIALIQR--GNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTSCCTTSEEEEEC--CSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCcCceEEEEeC--CCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 444589999999999 89999999999999999999999986432 1 134678999999999999999884
No 58
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=94.93 E-value=0.051 Score=62.56 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=56.4
Q ss_pred cccccceEEEEecCCCCch---------HHHH----HHHHHHcCceEEEEEecCCCC--------C---CCCcccceEEe
Q 042478 379 ATLAAGKIILCFSRPDTQD---------IQSA----AISVTQAGGVGLIYAQFHTDG--------L---DSCNLIPCIKV 434 (954)
Q Consensus 379 ~~~v~Gkivl~~~~~g~~~---------~~~k----~~~~~~aGa~gvi~~n~~~~~--------~---~~~~~ip~~~i 434 (954)
+.+++|||||+.+ +.|. +..| ..++.++||.|+|++++.... . .....||++.|
T Consensus 124 ~~dvkGKIVlv~~--~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~I 201 (444)
T 3iib_A 124 AGSLNDKIAFIDA--KTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAI 201 (444)
T ss_dssp TTTTTTCEEEECC--CCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEE
T ss_pred ccccCccEEEEeC--CCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEe
Confidence 5689999999988 6663 4454 357999999999999864321 1 12356899999
Q ss_pred ehhhHHHHHHHHhhcCCCcccc
Q 042478 435 NYEVGTQILSYIRRARSPIAKL 456 (954)
Q Consensus 435 ~~~~g~~l~~~~~s~~~~~~~i 456 (954)
+.++++.|...+..+...++++
T Consensus 202 s~~da~~L~~~l~~g~~~~v~l 223 (444)
T 3iib_A 202 SNPDADLINAMLKRDKEVVISL 223 (444)
T ss_dssp CHHHHHHHHHHHTTTCCCEEEE
T ss_pred cHHHHHHHHHHHhCCCCeEEEE
Confidence 9999999999887654443333
No 59
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=94.60 E-value=0.036 Score=66.49 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=54.8
Q ss_pred ccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCCCC-C---------------C-------------------
Q 042478 380 TLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDG-L---------------D------------------- 424 (954)
Q Consensus 380 ~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~~~-~---------------~------------------- 424 (954)
.+++|||||+.+ |.|.+..|..+++++||.|+|+|++..+. . .
T Consensus 128 vdv~GkIvlv~~--g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~ 205 (640)
T 3kas_A 128 TPVNGSIVIVRA--GKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSR 205 (640)
T ss_dssp SCCTTSEEEEES--CSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCS
T ss_pred cccCCcEEEEec--CCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccc
Confidence 479999999999 89999999999999999999999975321 0 0
Q ss_pred --CCcccceEEeehhhHHHHHHHHh
Q 042478 425 --SCNLIPCIKVNYEVGTQILSYIR 447 (954)
Q Consensus 425 --~~~~ip~~~i~~~~g~~l~~~~~ 447 (954)
....||+..|+.++++.|+..+.
T Consensus 206 ~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 206 SSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred ccCCCCCCEEecCHHHHHHHHHHcc
Confidence 01358999999999999987664
No 60
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=94.46 E-value=0.038 Score=67.00 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=55.9
Q ss_pred cccccceEEEEecCCCCchHHHHHHHHHHcCceEEEEEecCC-----C-------------C-----C------CC----
Q 042478 379 ATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHT-----D-------------G-----L------DS---- 425 (954)
Q Consensus 379 ~~~v~Gkivl~~~~~g~~~~~~k~~~~~~aGa~gvi~~n~~~-----~-------------~-----~------~~---- 425 (954)
..+++|||||+++ |.|.+.+|..+++++||.|+|+|++.. + . . .+
T Consensus 150 ~~~v~GkIvlv~~--G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TP 227 (707)
T 3fed_A 150 GINCTGKIVIARY--GKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTP 227 (707)
T ss_dssp CCCCTTCEEEEEC--CSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCT
T ss_pred CCCCCCeEEEEEC--CCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCC
Confidence 4579999999999 889999999999999999999998621 0 0 0 00
Q ss_pred ------------------CcccceEEeehhhHHHHHHHHhh
Q 042478 426 ------------------CNLIPCIKVNYEVGTQILSYIRR 448 (954)
Q Consensus 426 ------------------~~~ip~~~i~~~~g~~l~~~~~s 448 (954)
...||+..|+..+++.|+..+..
T Consensus 228 G~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 228 GYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp TSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 14689999999999999988764
No 61
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.04 E-value=0.43 Score=44.37 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=42.8
Q ss_pred ceEEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCC
Q 042478 650 ETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNH 706 (954)
Q Consensus 650 ~~~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 706 (954)
.+.+.+.+++|+|+.+..|+..... .++++|..-.+ ++||+..++|+|.+..
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~~ 92 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQS 92 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCSS
T ss_pred CeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcCC
Confidence 4566678899999988888877543 47889999888 5899999999999865
No 62
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=87.37 E-value=0.4 Score=54.93 Aligned_cols=52 Identities=23% Similarity=0.188 Sum_probs=36.4
Q ss_pred eeecccCCCcccccCCCCCCCCCCCCcCCeEEecCCceEecCCCCCCCCCCceEeecCCCch
Q 042478 461 TVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS 522 (954)
Q Consensus 461 ~~~~~~~~~~~a~FSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~y~~~SGTSMA 522 (954)
++......+.++.||++||.. ||+|||++|+++++..... .....+.|+||-
T Consensus 176 ~VgA~~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g~g~--~~~~~~~G~s~~ 227 (441)
T 1y9z_A 176 SVAAVDSNLDHAAFSQYTDQV--------EISGPGEAILSTVTVGEGR--LADITIGGQSYF 227 (441)
T ss_dssp EEEEECTTCCBCTTSCCCTTE--------EEEEECSSEEEECSTTCEE--EEEEEETTEECG
T ss_pred EEEEECCCCCCCccccCCCce--------EEEeccCCeeccccCCCcc--cceeeccccccc
Confidence 344456678899999999866 9999999999999752110 112356676653
No 63
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=85.32 E-value=0.55 Score=60.02 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=23.0
Q ss_pred CCCCCceEEEEEeCCCCCCCCCcCC
Q 042478 136 SNMGEGTIIGIIDTGVWPESESFSD 160 (954)
Q Consensus 136 ~~~G~GVvVgVIDTGId~~Hp~f~d 160 (954)
.+.|+||+|||+||||||.+|.|.-
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~ 56 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLET 56 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSC
T ss_pred CCCCCccEEEEEeCCCCCCCCccee
Confidence 5789999999999999999999963
No 64
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.87 E-value=3 Score=37.59 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=42.3
Q ss_pred ceEEEEEEEEecCCCCceeEEEEEc-CCCceEEEEcCEEEEecCCeEEEEEEEEEeCC
Q 042478 650 ETVTVTRKVTNVGQINSAYEALVEA-PYGVNMTVEPEVISFNMTIKILSFRVTFFSNH 706 (954)
Q Consensus 650 ~~~tv~rtvtNvg~~~~tY~~~v~~-p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 706 (954)
...+.+.+++|.|+.+..|+..... +.+...+++|..-.+ .+|++++++|+|.+..
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~ 82 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII 82 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC
T ss_pred CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC
Confidence 3456678899999999999984211 112347789998888 6799999999999864
No 65
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=73.65 E-value=12 Score=35.55 Aligned_cols=55 Identities=9% Similarity=0.106 Sum_probs=41.6
Q ss_pred eEEEEEEEEecCCCCceeEEEEEcC----CCceEEEEcCEEEEecCCeEEEEEEEEEeCC
Q 042478 651 TVTVTRKVTNVGQINSAYEALVEAP----YGVNMTVEPEVISFNMTIKILSFRVTFFSNH 706 (954)
Q Consensus 651 ~~tv~rtvtNvg~~~~tY~~~v~~p----~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 706 (954)
..+-+.|++|.|..+.+|++..... ..--++++|..-++ .+|++.+++|++....
T Consensus 44 ~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~ 102 (140)
T 3qbt_B 44 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSK 102 (140)
T ss_dssp CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCH
T ss_pred eeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEcc
Confidence 3455678999999999999984311 11237788998888 6899999999998643
No 66
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=66.86 E-value=19 Score=32.86 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=42.7
Q ss_pred EEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCC
Q 042478 652 VTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNH 706 (954)
Q Consensus 652 ~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 706 (954)
-..+..+.|..+.+.+|+++++..+|+.+. .|..+.+ ++||..++.|.+..+.
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 346678999999999999999987776553 3556777 6899999999999875
No 67
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=59.40 E-value=18 Score=36.80 Aligned_cols=65 Identities=9% Similarity=0.010 Sum_probs=44.6
Q ss_pred EEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCccCCCCCCCceEEEEEEE
Q 042478 652 VTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWT 724 (954)
Q Consensus 652 ~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~~~~~~~~~~~~G~l~w~ 724 (954)
.+.+.+++|.|+.+.+++.. ..|+-++....|..| ++|++.+++|++..... ..-+...++|+..
T Consensus 21 ~~~~~~i~N~g~~pl~i~~~-~~p~~~~~~~~~~~I---~PG~~g~I~vt~~~~~~----~~~G~~~~~i~v~ 85 (220)
T 2qsv_A 21 GVVRLVVNNTDESDLQVAVV-SLPSFVSLDDRAFRL---QAREPRELNLSLAVPRN----MPPGMKDEPLVLE 85 (220)
T ss_dssp CEEEEEEEECSSSCEEEEEE-ECCTTEECSCCEEEE---CSSSCEEEEEEECCCTT----CCSEEEEEEEEEE
T ss_pred ceEEEEEEeCCCCceEEEec-cCCCceEeeeCccee---CCCCceEEEEEEcchhc----ccCCceeeEEEEE
Confidence 44567899999988888764 346665655555555 68999999999987653 2234445666654
No 68
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=53.34 E-value=60 Score=30.13 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=35.4
Q ss_pred CceEEEEEEEEecCCCC-ceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEe
Q 042478 649 NETVTVTRKVTNVGQIN-SAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFS 704 (954)
Q Consensus 649 ~~~~tv~rtvtNvg~~~-~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~ 704 (954)
....+++.||+|.|..+ ..|++.+-. .|..+.-. ...+ ++|+++++++++..
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyv-ng~~v~t~--~v~L-a~G~s~tv~f~~~~ 84 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYI-NGTLYKNW--TVSL-GPKEEKVLTFNWTP 84 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEE-TTEEEEEE--EEEE-CTTCEEEEEEEECC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEE-CCEEEeeE--Eecc-CCCCeEEEEEEEEc
Confidence 45788999999999754 677777654 34444332 2345 67998887777763
No 69
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=41.42 E-value=72 Score=32.29 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=39.0
Q ss_pred CeeecccCCCCceEEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCC
Q 042478 639 PSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNH 706 (954)
Q Consensus 639 psi~~~~~~~~~~~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 706 (954)
..+-++.+. ....+.+.+++|.|+.+-..+ .++..-|... +++..-.. ++||+.+++|++....
T Consensus 124 ~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~-~v~~scgct~-~~~~~~~i-~PGe~~~i~v~~~~~~ 187 (220)
T 2qsv_A 124 TYLDMGQLD-GETTKAAIEIRNVGAGPLRLH-SVTTRNPALT-AVPDRTEI-KPGGSTLLRIAVDPQV 187 (220)
T ss_dssp CEEEEEECT-TSCEEEEEEEEECSSSCEEEE-EEEECSTTEE-EEESCSEE-CTTCEEEEEEEECHHH
T ss_pred eEEeeeccC-CCeEEEEEEEEECCCCCEEEE-EEEeCCCCEe-eecCCccC-CCCCEEEEEEEEecCC
Confidence 444444442 345666789999998876664 2333334322 22332233 6899999999998754
No 70
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=39.80 E-value=69 Score=38.66 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=36.0
Q ss_pred ceEEEEEEEEecCCCCceeEEEE--EcCCCc-----eEEEEcCEEEEecCCeEEEEEEEEEeCC
Q 042478 650 ETVTVTRKVTNVGQINSAYEALV--EAPYGV-----NMTVEPEVISFNMTIKILSFRVTFFSNH 706 (954)
Q Consensus 650 ~~~tv~rtvtNvg~~~~tY~~~v--~~p~g~-----~v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 706 (954)
...+|+.+|||+|+.+..-.+.+ ..|.+- +.-.-=..+.+ ++||+++++++++...
T Consensus 613 ~~~~vsv~VtNtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~kv~L-~pGes~~V~~~l~~~~ 675 (713)
T 3zyz_A 613 NVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNL-TPGQSGTATFNIRRRD 675 (713)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEEEECCTTSSSCCSCEEEEEEEEEE-CTTCEEEEEEEEEGGG
T ss_pred CeEEEEEEEEeCCCCccceeeeeeeecCCCCCCchhHHhhhccccee-CCCCeEEEEEEEcHHH
Confidence 35789999999998776666654 444331 11111112334 6899999999998653
No 71
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=39.08 E-value=69 Score=35.29 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=42.4
Q ss_pred ceEEEEEEEEecCCCCceeEEEEEcCCCce----EEEEcCEEEEecCCeEEEEEEEEEeCC
Q 042478 650 ETVTVTRKVTNVGQINSAYEALVEAPYGVN----MTVEPEVISFNMTIKILSFRVTFFSNH 706 (954)
Q Consensus 650 ~~~tv~rtvtNvg~~~~tY~~~v~~p~g~~----v~v~P~~l~f~~~g~~~~~~Vt~~~~~ 706 (954)
...+-+.||+|.|..+.+|++.-....... ++++|..-.+ .+|++.+++|++....
T Consensus 46 ~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l-~Pge~~~i~l~~~v~~ 105 (366)
T 3qis_A 46 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSK 105 (366)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCT
T ss_pred CeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEE-CCCCEEEEEEEEEECH
Confidence 345556789999999999999643222222 7889998888 6899999999998765
No 72
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=34.82 E-value=66 Score=38.93 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=45.1
Q ss_pred cCCCCCeeecccCC---CCceEEEEEEEEecCCCCceeEEEE--EcCCCceEEEEcC-------EE-EEecCCeEEEEEE
Q 042478 634 LDLNLPSITIPNLH---NNETVTVTRKVTNVGQINSAYEALV--EAPYGVNMTVEPE-------VI-SFNMTIKILSFRV 700 (954)
Q Consensus 634 ~~lN~psi~~~~~~---~~~~~tv~rtvtNvg~~~~tY~~~v--~~p~g~~v~v~P~-------~l-~f~~~g~~~~~~V 700 (954)
+-|.|.+|...++. ..+..+|+.+|||+|+.+..-.+.+ ..|.+ .+. .|. .+ .+ ++||++++++
T Consensus 596 ~GLSYTtF~ys~~~~~~~~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~-~~~-~P~k~L~gF~kv~~L-~pGes~~V~~ 672 (721)
T 2x41_A 596 YGLSYTTFEYSDLNVSFDGETLRVQYRIENTGGRAGKEVSQVYIKAPKG-KID-KPFQELKAFHKTRLL-NPGESEEVVL 672 (721)
T ss_dssp CCBCSSCEEEEEEEEEECSSEEEEEEEEEECSSSCBCCEEEEEEECCCS-SSC-CCSCEEEEEEECCCB-CTTCEEEEEE
T ss_pred CCCCcceeEeeceEeecCCCeEEEEEEEEECCCCCCcEEeeEEEccCCC-CCC-CchHHhhcccccccC-CCCCeEEEEE
Confidence 45777777766652 1356889999999998776666654 44433 111 122 12 22 6899999999
Q ss_pred EEEeCC
Q 042478 701 TFFSNH 706 (954)
Q Consensus 701 t~~~~~ 706 (954)
+++...
T Consensus 673 ~l~~~~ 678 (721)
T 2x41_A 673 EIPVRD 678 (721)
T ss_dssp EEEGGG
T ss_pred EECHHH
Confidence 998754
No 73
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=33.33 E-value=93 Score=38.32 Aligned_cols=71 Identities=11% Similarity=0.182 Sum_probs=44.6
Q ss_pred cCCCCCeeecc--cCC-CCceEEEEEEEEecC-CCCceeEEEE--EcCCC-c----eEEEEcCEEEEecCCeEEEEEEEE
Q 042478 634 LDLNLPSITIP--NLH-NNETVTVTRKVTNVG-QINSAYEALV--EAPYG-V----NMTVEPEVISFNMTIKILSFRVTF 702 (954)
Q Consensus 634 ~~lN~psi~~~--~~~-~~~~~tv~rtvtNvg-~~~~tY~~~v--~~p~g-~----~v~v~P~~l~f~~~g~~~~~~Vt~ 702 (954)
+-|.|.+|... ++. ..+..+|+.+|||+| +.+..-.+.+ ..|.+ + +--.-=..+.+ ++||++++++++
T Consensus 716 ~GLSYTtF~ys~~~l~v~~~~~~v~v~V~NtG~~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L-~pGes~~V~~~l 794 (845)
T 3abz_A 716 YGLSYTTFELDISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHL-EPGEKKTVNIDL 794 (845)
T ss_dssp CCBCSSCEEEEEEEEEECSSEEEEEEEEEECCSSCCEEEEEEEEEEESSCSSCCCSCEEEEEEEEEE-CTTCEEEEEEEE
T ss_pred CCCcceeEEEecccccccCCeEEEEEEEEECCcCCCcceeeeeeEeCCCCCcchhhheeccceeEEE-CCCCEEEEEEEe
Confidence 45778888877 551 125688999999999 7766655553 33432 1 11111112334 689999999999
Q ss_pred E-eC
Q 042478 703 F-SN 705 (954)
Q Consensus 703 ~-~~ 705 (954)
+ ..
T Consensus 795 ~~~~ 798 (845)
T 3abz_A 795 ELKD 798 (845)
T ss_dssp EHHH
T ss_pred CChH
Confidence 8 54
No 74
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=32.44 E-value=95 Score=28.52 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=43.0
Q ss_pred ceEEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeC
Q 042478 650 ETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSN 705 (954)
Q Consensus 650 ~~~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~ 705 (954)
..++-..+++|.++....|++.-.+|. ...|.|..=.+ .+|++..+.|++.+.
T Consensus 27 ~~~~~~l~L~N~s~~~vaFKVKTT~p~--~y~VrP~~G~i-~P~~s~~v~V~~~~~ 79 (128)
T 1z9l_A 27 DVVTTNLKLQNPSDRKVCFKVKTTAPR--RYCVRPNSGVI-DPGSIVTVSVMLQPF 79 (128)
T ss_dssp SCEEEEEEEECCSSSCEEEEEEESCGG--GEEEESCEEEE-CTTCEEEEEEEECCC
T ss_pred ceEEEEEEEECCCCCeEEEEEECCCCC--ceEEeCCCcEE-CCCCeEEEEEEECcC
Confidence 345566889999999999999988886 57788987655 689999999998764
No 75
>2kq1_A BH0266 protein; solution NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus halodurans}
Probab=32.08 E-value=12 Score=34.26 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=33.1
Q ss_pred EEEEecCCCCceeEEEEE-cCCCceEEEEcCEEEEe-cCCeEEEEEEEEEeCCc
Q 042478 656 RKVTNVGQINSAYEALVE-APYGVNMTVEPEVISFN-MTIKILSFRVTFFSNHK 707 (954)
Q Consensus 656 rtvtNvg~~~~tY~~~v~-~p~g~~v~v~P~~l~f~-~~g~~~~~~Vt~~~~~~ 707 (954)
.-++|.+....+..+.++ .|.|+++++.|.++++. ..-.+++|.|+++..+.
T Consensus 59 vDLs~l~~G~~~vpv~v~~lp~~v~v~v~P~~V~V~i~~~~~k~~pV~v~~~g~ 112 (119)
T 2kq1_A 59 VDLTEAGEGSHTVDVEHRGFPGDLAVTVEPRMARVQLEERQTVSVPVTVEMINL 112 (119)
T ss_dssp EECTTCCBEEEEEECEEESSCTTSEEEESCCEEEEEEESCCCCCCCCCCCCCCC
T ss_pred EECccCCCCeEEEEEEEecCCCCeEEEEcCCEEEEEEEEEEEEEEEEEEEECCC
Confidence 334455432223333445 68899999999988776 44566788887776553
No 76
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=29.26 E-value=1.9e+02 Score=33.62 Aligned_cols=64 Identities=20% Similarity=0.143 Sum_probs=44.8
Q ss_pred CCeeecccCCCCceEEEEEEEEecCCCCcee-EEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeCCc
Q 042478 638 LPSITIPNLHNNETVTVTRKVTNVGQINSAY-EALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHK 707 (954)
Q Consensus 638 ~psi~~~~~~~~~~~tv~rtvtNvg~~~~tY-~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~~~ 707 (954)
.|.+++..- ++.+++.+|||-+..+... ++++..|.|..++. ....| ++|++.++.|+++.+..
T Consensus 364 ~~~~~~~~g---~~~~~~~~vtn~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~g~~~t~~~~vt~~~~ 428 (601)
T 1w8o_A 364 IPDVALEPG---QQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQG--SVEPL-MPGRQAKGQVTITVPAG 428 (601)
T ss_dssp CCCEEECTT---CEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEE--EECCB-CTTCEEEEEEEEECCTT
T ss_pred CccceecCC---ceeEEEEEEECCCceeccCceEEEecCCCcEEec--ccccc-CCCCceEEEEEEecCCC
Confidence 466666543 6888999999976543322 45567899988876 23344 57999999888888753
No 77
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=28.90 E-value=1.1e+02 Score=28.24 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=41.1
Q ss_pred EEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeC
Q 042478 653 TVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSN 705 (954)
Q Consensus 653 tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~ 705 (954)
+-..+++|.++....|++.-.+|. ...|.|..=.+ .+|++..+.|++.+-
T Consensus 28 ~~~l~l~N~s~~~vaFKVKTT~p~--~y~VrP~~Gii-~P~~s~~v~V~~q~~ 77 (126)
T 1msp_A 28 TYHIKITNAGGRRIGWAIKTTNMR--RLSVDPPCGVL-DPKEKVLMAVSCDTF 77 (126)
T ss_dssp CEEEEEEECSSSCEEEEEEESCTT--TEEEESCEEEE-CTTCEEEEEEEECCC
T ss_pred EEEEEEECCCCCeEEEEEEcCCCC--cEEEECCCeEE-CCCCEEEEEEEecCC
Confidence 345789999999999999988887 46788987766 689999999988774
No 78
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=27.26 E-value=1.2e+02 Score=28.82 Aligned_cols=51 Identities=20% Similarity=0.109 Sum_probs=41.9
Q ss_pred EEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeC
Q 042478 652 VTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSN 705 (954)
Q Consensus 652 ~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~ 705 (954)
++-..+++|..+....|++.-.+|. ...|.|..=.+ .+|++.++.|++.+.
T Consensus 37 ~~~~l~L~N~s~~~VaFKVKTT~p~--~y~VrP~~GiI-~P~~s~~V~V~lq~~ 87 (152)
T 1wic_A 37 KKTLIVLTNVTKNIVAFKVRTTAPE--KYRVKPSNSSC-DPGASIDIIVSPHGG 87 (152)
T ss_dssp CCEEEEEEBCSSSCEEEEEEESCTT--TEEEESSEEEE-CTTCEEEEEEEECSS
T ss_pred EEEEEEEEcCCCCeEEEEEECCCCC--ceeecCCCcEE-CCCCeEEEEEEecCc
Confidence 3445789999999999999988886 57788988766 689999999998764
No 79
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=27.13 E-value=1.7e+02 Score=26.21 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=39.7
Q ss_pred EEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeC
Q 042478 654 VTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSN 705 (954)
Q Consensus 654 v~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~ 705 (954)
.+.+++|..+....|++.-.+|. ...|.|..=.+ .+|++.++.|+..+.
T Consensus 19 ~~l~L~N~t~~~vaFKVKtT~p~--~y~VrP~~G~I-~P~~~~~i~I~~q~~ 67 (109)
T 1row_A 19 STHKLVNGGAEKIVFKIKSSNNN--EYRIAPVFGFV-DPSGSKDVVITRTAG 67 (109)
T ss_dssp EEEEEEECSSSCEEEEEEESCSS--SEEEECSEEEE-CTTEEEEEEEEECSC
T ss_pred EEEEEEcCCCCeEEEEEEeCCCC--ceEEcCCceEE-CCCCeEEEEEEeCCC
Confidence 45789999999999999888876 47778987655 789999988888763
No 80
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=26.33 E-value=1.5e+02 Score=27.06 Aligned_cols=50 Identities=10% Similarity=0.035 Sum_probs=39.9
Q ss_pred EEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeC
Q 042478 653 TVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSN 705 (954)
Q Consensus 653 tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~ 705 (954)
+.+.+++|..+....|++.-..|. ...|.|..=.+ .+|++.++.|+..+.
T Consensus 26 ~~~l~L~N~t~~~vAFKVKtT~p~--~YrVrP~~G~I-~Pg~~~~I~I~~q~~ 75 (116)
T 1m1s_A 26 NSTHNITSESDSRLAFKVKSSNNE--HYRVRPVYGFV-DAKGKSKLDINRLPG 75 (116)
T ss_dssp EEEEEEEECSSSEEEEEEEESCTT--TEEEECSEEEE-CTTCEEEEEEEECSC
T ss_pred EEEEEEECCCCCeEEEEEEecCCC--ceEEcCCceEE-CCCCeEEEEEEeCCC
Confidence 455789999999999998877776 47778886544 789999998888764
No 81
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.70 E-value=46 Score=26.58 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=26.6
Q ss_pred CchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 042478 520 SMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554 (954)
Q Consensus 520 SMAaP~VAG~aALl~q~~P~~sp~~Iks~L~~TA~ 554 (954)
|-..|..--....|++.+|+++...|+..|...-.
T Consensus 3 ~~~~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~g 37 (59)
T 1wgl_A 3 SGSSGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRG 37 (59)
T ss_dssp SCSSSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTT
T ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCC
Confidence 33344445567889999999999999999976544
No 82
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=23.10 E-value=3.7e+02 Score=24.52 Aligned_cols=54 Identities=9% Similarity=0.053 Sum_probs=34.0
Q ss_pred CceEEEEEEEEecCCCCc--------eeEEEEEcCCCceEEE---------EcCEEEEecCCeEEEEEEEEE
Q 042478 649 NETVTVTRKVTNVGQINS--------AYEALVEAPYGVNMTV---------EPEVISFNMTIKILSFRVTFF 703 (954)
Q Consensus 649 ~~~~tv~rtvtNvg~~~~--------tY~~~v~~p~g~~v~v---------~P~~l~f~~~g~~~~~~Vt~~ 703 (954)
.+...++.+|+|.++.+. .|.+.+....|-.|.- -....++ ++||+++|+.++.
T Consensus 17 g~~v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl-~pGE~~~f~~~w~ 87 (120)
T 3isy_A 17 PEQIKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTL-ESGETYDFSDVWK 87 (120)
T ss_dssp SSCEEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEE-CTTCEEEEEEEES
T ss_pred CCeEEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEE-CCCCEEEEEEEeC
Confidence 356778899999987433 3444454555544431 1113345 6899999999888
No 83
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.97 E-value=1.2e+02 Score=28.52 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=41.4
Q ss_pred EEEEEEEEecCCCCceeEEEEEcCCCceEEEEcCEEEEecCCeEEEEEEEEEeC
Q 042478 652 VTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKILSFRVTFFSN 705 (954)
Q Consensus 652 ~tv~rtvtNvg~~~~tY~~~v~~p~g~~v~v~P~~l~f~~~g~~~~~~Vt~~~~ 705 (954)
++-..+++|..+....|++.-.+|. ...|.|..=.+ .+|++..+.|++.+.
T Consensus 33 ~~~~l~L~N~s~~~VaFKVKTT~p~--~y~VrP~~GiI-~P~~s~~v~V~l~~~ 83 (147)
T 2cri_A 33 VTTNLKLQNPSDRKVCFKVKTTAPR--RYCVRPNSGII-DPGSIVTVSVMLQPF 83 (147)
T ss_dssp CCEEEEEECCSSSCEEEEEEESCTT--SEEEESSEEEC-CTTCEEEEEEEECCC
T ss_pred EEEEEEEECCCCCcEEEEEECCCCc--cEEEcCCCcEE-CCCCeEEEEEEECCC
Confidence 3445789999999999999988887 46778987655 789999999998764
Done!