RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 042478
(954 letters)
>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain,
uncharacterized subfamily 3. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 307
Score = 290 bits (744), Expect = 1e-90
Identities = 106/244 (43%), Positives = 130/244 (53%), Gaps = 38/244 (15%)
Query: 110 LKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVP 169
+LHTTRS +F+GL L +N GEG IIG++DTG+WPE SF+D G G P P
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLG-AANAGEGIIIGVLDTGIWPEHPSFADVGGG--PYP 57
Query: 170 PHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMIN--------------------AST 209
W G C GE FN +CN KLIGAR+F G AST
Sbjct: 58 HTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTAST 117
Query: 210 --------NTDEGLAAGLARGGAPLAHLAIYKACW-DIGCTDADVLKAFDKAIHDGVDVL 260
+ G A G A G AP A +A+YK CW D GC +D+L A D+AI DGVDV+
Sbjct: 118 AAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVI 177
Query: 261 SVSIG-NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVG 319
S SIG + D IAI HA+ GI V +SAGN GP A T+ N APW+ TV
Sbjct: 178 SYSIGGGSPDPYE-----DPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232
Query: 320 ATTI 323
A+T+
Sbjct: 233 ASTL 236
Score = 125 bits (317), Expect = 1e-31
Identities = 45/72 (62%), Positives = 55/72 (76%), Gaps = 4/72 (5%)
Query: 487 LKPDIVAPGVDILSAYPPIGSKDIQ----GYALLSGTSMSCPHVAGIAALIKSLHRDWSP 542
LKPDI APGVDIL+A+ P G+ +A +SGTSM+ PHVAG+AAL+KS H DWSP
Sbjct: 236 LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSP 295
Query: 543 AAIRSALVTTAS 554
AAI+SAL+TTA
Sbjct: 296 AAIKSALMTTAY 307
>gnl|CDD|234661 PRK00140, rplK, 50S ribosomal protein L11; Validated.
Length = 141
Score = 268 bits (687), Expect = 9e-85
Identities = 96/138 (69%), Positives = 112/138 (81%)
Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
AKKV+G IKL + AGKA PAPPVGPALG +GVNIM FCK +NART D+ G IPV ITVY
Sbjct: 2 AKKVVGYIKLQIPAGKANPAPPVGPALGQRGVNIMEFCKAFNARTQDQKGLPIPVVITVY 61
Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
+DRSFTFI KTPPASVLL KAAG+EKGS +P ++KVGKIT Q+R IA K+PDLN I
Sbjct: 62 EDRSFTFITKTPPASVLLKKAAGIEKGSGEPNKEKVGKITRAQVREIAETKMPDLNAADI 121
Query: 925 ESAMRIIAGTAANMGIDI 942
E+AMR+IAGTA +MGI +
Sbjct: 122 EAAMRMIAGTARSMGIVV 139
>gnl|CDD|233500 TIGR01632, L11_bact, 50S ribosomal protein L11. This model
represents bacterial, chloroplast, and most
mitochondrial forms of 50S ribosomal protein L11
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 140
Score = 232 bits (593), Expect = 2e-71
Identities = 93/140 (66%), Positives = 115/140 (82%), Gaps = 1/140 (0%)
Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVY 864
KK++G+IKL + AG+A PAPPVGPALG +GVNIM FCK +NARTAD + G +PV ITVY
Sbjct: 1 KKIVGIIKLQVPAGQANPAPPVGPALGQRGVNIMEFCKQFNARTADYEPGLPVPVVITVY 60
Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
+D+SFTFI+KTPP S LL KAAGVEKGSK+PK++KVGKIT +Q+R IA K+ DLN I
Sbjct: 61 EDKSFTFIVKTPPVSYLLKKAAGVEKGSKNPKKEKVGKITRKQVREIAEIKMSDLNTKDI 120
Query: 925 ESAMRIIAGTAANMGIDIDP 944
E+AM+IIAGTA +MGI+I
Sbjct: 121 EAAMKIIAGTAKSMGIEIVG 140
>gnl|CDD|177049 CHL00127, rpl11, ribosomal protein L11; Validated.
Length = 140
Score = 231 bits (591), Expect = 3e-71
Identities = 97/138 (70%), Positives = 113/138 (81%)
Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
AKK L +IKLAL AGKATPAPPVGPALG GVNI FCK+YNART DK G +IPVEI+VY
Sbjct: 2 AKKKLAIIKLALPAGKATPAPPVGPALGQHGVNINLFCKEYNARTKDKIGLIIPVEISVY 61
Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
+D+S+TFILKTPPASVLL KAAG++KGS +P ++KVG ITI+QL IA KLPDLN S+
Sbjct: 62 EDKSYTFILKTPPASVLLAKAAGIKKGSGEPNKKKVGSITIKQLEEIAQIKLPDLNTISL 121
Query: 925 ESAMRIIAGTAANMGIDI 942
A++II GTA NMGI I
Sbjct: 122 SKAIKIIEGTAKNMGISI 139
>gnl|CDD|223158 COG0080, RplK, Ribosomal protein L11 [Translation, ribosomal
structure and biogenesis].
Length = 141
Score = 229 bits (587), Expect = 2e-70
Identities = 85/140 (60%), Positives = 109/140 (77%)
Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
AKKV+ +IKL + AGKA P+PPVGPALG GVNIM FCK++NA T D+ G +PV ITVY
Sbjct: 1 AKKVVKIIKLQVPAGKANPSPPVGPALGQLGVNIMEFCKEFNAATKDEKGLPVPVVITVY 60
Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
+DRSFTFI+KTPPAS LL KAAG+EKGS P + KVGK+T+ Q+R IA K+PDLN +
Sbjct: 61 EDRSFTFIVKTPPASALLKKAAGIEKGSGKPNKNKVGKLTLAQVREIAKTKMPDLNAKDL 120
Query: 925 ESAMRIIAGTAANMGIDIDP 944
E+A++ I GTA +MG+ ++
Sbjct: 121 EAAVKEILGTARSMGVTVEG 140
>gnl|CDD|100101 cd00349, Ribosomal_L11, Ribosomal protein L11. Ribosomal protein
L11, together with proteins L10 and L7/L12, and 23S
rRNA, form the L7/L12 stalk on the surface of the large
subunit of the ribosome. The homologous eukaryotic
cytoplasmic protein is also called 60S ribosomal protein
L12, which is distinct from the L12 involved in the
formation of the L7/L12 stalk. The C-terminal domain
(CTD) of L11 is essential for binding 23S rRNA, while
the N-terminal domain (NTD) contains the binding site
for the antibiotics thiostrepton and micrococcin. L11
and 23S rRNA form an essential part of the
GTPase-associated region (GAR). Based on differences in
the relative positions of the L11 NTD and CTD during the
translational cycle, L11 is proposed to play a
significant role in the binding of initiation factors,
elongation factors, and release factors to the ribosome.
Several factors, including the class I release factors
RF1 and RF2, are known to interact directly with L11. In
eukaryotes, L11 has been implicated in regulating the
levels of ubiquinated p53 and MDM2 in the MDM2-p53
feedback loop, which is responsible for apoptosis in
response to DNA damage. In bacteria, the "stringent
response" to harsh conditions allows bacteria to
survive, and ribosomes that lack L11 are deficient in
stringent factor stimulation.
Length = 131
Score = 219 bits (561), Expect = 5e-67
Identities = 83/131 (63%), Positives = 105/131 (80%)
Query: 812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTF 871
IKL + AGKA+PAPP+GPALG GVNIM FCK++NART D G +PV+ITVY+DRSFTF
Sbjct: 1 IKLQVPAGKASPAPPLGPALGQLGVNIMKFCKEFNARTKDYKGLPVPVKITVYNDRSFTF 60
Query: 872 ILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRII 931
+KTPPAS LL KAAG+EKGSK P ++KVG IT++Q+ IA KLPDLN +++SA++ I
Sbjct: 61 EVKTPPASALLKKAAGIEKGSKKPNKEKVGNITLDQVYEIAKIKLPDLNAKTLKSAVKEI 120
Query: 932 AGTAANMGIDI 942
GTA +MGI +
Sbjct: 121 LGTARSMGITV 131
>gnl|CDD|197819 smart00649, RL11, Ribosomal protein L11/L12.
Length = 132
Score = 219 bits (560), Expect = 6e-67
Identities = 84/132 (63%), Positives = 105/132 (79%)
Query: 812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTF 871
IKL + AGKA PAPP+GPALG G+NIM FCK++NART DK G IPV+ITVY+D+SFTF
Sbjct: 1 IKLQIPAGKANPAPPLGPALGQLGINIMEFCKEFNARTKDKKGLPIPVKITVYNDKSFTF 60
Query: 872 ILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRII 931
ILKTPPAS LL KAAG+EKGSK P ++KVG IT++Q+ IA K PDLN +E+A++ I
Sbjct: 61 ILKTPPASALLKKAAGIEKGSKKPGKKKVGNITLDQVYEIAKIKRPDLNAKDLEAAVKEI 120
Query: 932 AGTAANMGIDID 943
GTA +MGI ++
Sbjct: 121 LGTARSMGITVE 132
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 135 bits (340), Expect = 4e-36
Identities = 64/138 (46%), Positives = 84/138 (60%), Gaps = 4/138 (2%)
Query: 803 AKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEIT 862
K+V+ + KL AG+A P GP+L G+N+ F K +N T D+ G +PV+IT
Sbjct: 1 MAKKEVVKVAKLQFNAGQAKP----GPSLAGVGINMPEFTKQFNDATRDRGGEPVPVQIT 56
Query: 863 VYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCT 922
VY D+SF F L T PAS + +AA ++ GS + K VG IT+ QL IA KLPDLN
Sbjct: 57 VYKDKSFDFKLFTAPASFKIKQAAKIKSGSANSKTTIVGTITLSQLEEIAKYKLPDLNTD 116
Query: 923 SIESAMRIIAGTAANMGI 940
+E AM IAGTA NMG+
Sbjct: 117 DVEEAMHTIAGTAKNMGV 134
>gnl|CDD|234908 PRK01143, rpl11p, 50S ribosomal protein L11P; Validated.
Length = 163
Score = 133 bits (337), Expect = 4e-36
Identities = 51/140 (36%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
KKV +++ +E GKATP PP+GPALG G+N+ ++ N +T D G +PV++ V
Sbjct: 1 MKKV---VEVLVEGGKATPGPPLGPALGPLGLNVKQVVQEINEKTKDFKGMQVPVKVIVD 57
Query: 865 DD-RSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTS 923
D + F + PP + L+ K G+EKGS +P + VG ++ EQ+ IA K DL
Sbjct: 58 TDTKKFEIEVGIPPTTALIKKELGIEKGSGEPGHEVVGNLSFEQVVKIAIMKKDDLLSYD 117
Query: 924 IESAMRIIAGTAANMGIDID 943
+++A++ + GT +MG+ ++
Sbjct: 118 LKAAVKEVLGTCVSMGVTVE 137
>gnl|CDD|189492 pfam00298, Ribosomal_L11, Ribosomal protein L11, RNA binding
domain.
Length = 69
Score = 116 bits (294), Expect = 2e-31
Identities = 41/69 (59%), Positives = 55/69 (79%)
Query: 874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAG 933
KTPPAS LL KAAG+EKGS P ++KVGKIT++Q+ IA K+PDLN +E+A++II G
Sbjct: 1 KTPPASYLLKKAAGIEKGSGKPGKEKVGKITLKQVYEIAKIKMPDLNANDLEAAVKIIIG 60
Query: 934 TAANMGIDI 942
TA +MGI++
Sbjct: 61 TARSMGIEV 69
>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family
domain in Vpr-like proteins. The maturation of the
peptide antibiotic (lantibiotic) subtilin in Bacillus
subtilis ATCC 6633 includes posttranslational
modifications of the propeptide and proteolytic cleavage
of the leader peptide. Vpr was identified as one of the
proteases, along with WprA, that are capable of
processing subtilin. Asp, Ser, His triadPeptidases S8
or Subtilases are a serine endo- and exo-peptidase clan.
They have an Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of subtilases may be enhanced by
calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity. Some
members of this clan contain disulfide bonds. These
enzymes can be intra- and extracellular, some function
at extreme temperatures and pH values.
Length = 295
Score = 122 bits (308), Expect = 1e-30
Identities = 60/140 (42%), Positives = 75/140 (53%), Gaps = 16/140 (11%)
Query: 449 ARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSK 508
A S I +S TV + V SSRGP S + +KPDIVAPGVDI+S P G+
Sbjct: 172 APSAITVGAS--TVADVAEADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMSTAPGSGT- 227
Query: 509 DIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGS 568
GYA +SGTSM+ PHVAG AAL+K H DWSPA I++AL+ TA +G
Sbjct: 228 ---GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPL------YDSDG- 277
Query: 569 TRKEADPFDIGGGHVNPNKA 588
G G V+ +A
Sbjct: 278 --VVYPVSRQGAGRVDALRA 295
Score = 77.8 bits (192), Expect = 2e-15
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 28/203 (13%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G+G + +IDTG+ G V + + + + + R +
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGY----------DFVDDDYDPMDTRPYP 50
Query: 199 KGIMDMIN----------ASTNTDEGLAAGLARGGAPLAHLAIYKACWD-IGCTDADVLK 247
+ D A G+ G +G AP A L YK T ++
Sbjct: 51 SPLGDASAGDATGHGTHVAGIIAGNGVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVIIA 110
Query: 248 AFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQT 307
A ++A+ DG+DV+++S+G+ + D D+IAI + A+ G+ VV++AGN GP T
Sbjct: 111 AIEQAVDDGMDVINLSLGSS---VNGPDDPDAIAINN--AVKAGVVVVAAAGNSGPAPYT 165
Query: 308 IVN--TAPWIITVGATTIDRAFP 328
I + TAP ITVGA+T+
Sbjct: 166 IGSPATAPSAITVGASTVADVAE 188
>gnl|CDD|217808 pfam03946, Ribosomal_L11_N, Ribosomal protein L11, N-terminal
domain. The N-terminal domain of Ribosomal protein L11
adopts an alpha/beta fold and is followed by the RNA
binding C-terminal domain.
Length = 59
Score = 105 bits (265), Expect = 1e-27
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSF 869
IKL + AGKA PAPP+GPALG GVNIM FCK++NA T D G +PV+ITVY+DRSF
Sbjct: 2 IKLQVPAGKANPAPPLGPALGQLGVNIMEFCKEFNAATKDYKGLPVPVKITVYNDRSF 59
>gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like:
Protease-associated domain containing subtilisin-like
proteases. This group contains various PA
domain-containing subtilisin-like proteases including
melon cucumisin, Arabidopsis thaliana Ara12, a nodule
specific serine protease from Alnus glutinosa ag12,
members of the tomato P69 family, and tomato LeSBT2.
These proteins belong to the peptidase S8 family.
Cucumisin from the juice of melon fruits is a
thermostable serine peptidase, with a broad substrate
specificity for oligopeptides and proteins. A. thaliana
Ara12 is a thermostable, extracellular serine protease,
found chiefly in silique tissue and stem tissue. Ara12
is stimulated by Ca2+ ions. A. glutinosa ag12 is
expressed at high levels in the nodules, and at low
levels in the shoot tips; it is implicated in both
symbiotic and non-symbiotic processes in plant
development. The tomato P69 protease family is comprised
of various protein isoforms of approximately 69KDa.
These isoforms accumulate extracellularly. Some of the
P69 genes are tightly regulated in a tissue specific
fashion, and by environmental and developmental signals.
For example: infection with avirulent bacteria activates
transcription of the genes for the P69 B and C isoforms,
the P69 E transcript was detected only in roots, and the
P69F transcript only in hydathodes. The Tomato LeSBT2
subtilase transcript was not detected in flowers and
roots, but was present in cotyledons and leaves. The
significance of the PA domain to these proteins has not
been ascertained. It may be a protein-protein
interaction domain. At peptidase active sites, the PA
domain may participate in substrate binding and/or
promoting conformational changes, which influence the
stability and accessibility of the site to substrate.
Length = 126
Score = 100 bits (252), Expect = 4e-25
Identities = 46/129 (35%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 331 ITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCF 390
+TLGN + + GQS+ G L Y + A+ C GSL+ + GKI+LC
Sbjct: 2 VTLGNGKTIVGQSLYPGN--LKTYPLVYKSANS-GDVDASLCLPGSLDPSKVKGKIVLCD 58
Query: 391 SRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDS---CNLIPCIKVNYEVGTQILSYIR 447
R + +V AGG G+I A TDGLD +++P + V+YE GT ILSYI
Sbjct: 59 -RGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYIN 117
Query: 448 RARSPIAKL 456
+P A +
Sbjct: 118 STSNPTATI 126
>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family
domain in Subtilisin proteins. This group is composed
of many different subtilisins: Pro-TK-subtilisin,
subtilisin Carlsberg, serine protease Pb92 subtilisin,
and BPN subtilisins just to name a few.
Pro-TK-subtilisin is a serine protease from the
hyperthermophilic archaeon Thermococcus kodakaraensis
and consists of a signal peptide, a propeptide, and a
mature domain. TK-subtilisin is matured from
pro-TK-subtilisin upon autoprocessing and degradation of
the propeptide. Unlike other subtilisins though, the
folding of the unprocessed form of pro-TK-subtilisin is
induced by Ca2+ binding which is almost completed prior
to autoprocessing. Ca2+ is required for activity unlike
the bacterial subtilisins. The propeptide is not
required for folding of the mature domain unlike the
bacterial subtilases because of the stability produced
from Ca2+ binding. Subtilisin Carlsberg is extremely
similar in structure to subtilisin BPN'/Novo thought it
has a 30% difference in amino acid sequence. The
substrate binding regions are also similar and 2
possible Ca2+ binding sites have been identified
recently. Subtilisin Carlsberg possesses the highest
commercial importance as a proteolytic additive for
detergents. Serine protease Pb92, the serine protease
from the alkalophilic Bacillus strain PB92, also
contains two calcium ions and the overall folding of
the polypeptide chain closely resembles that of the
subtilisins. Members of the peptidases S8 and S35 clan
include endopeptidases, exopeptidases and also a
tripeptidyl-peptidase. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The S53
family contains a catalytic triad Glu/Asp/Ser. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values.
Length = 229
Score = 95.7 bits (239), Expect = 4e-22
Identities = 39/81 (48%), Positives = 47/81 (58%), Gaps = 14/81 (17%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFSS GP ++ APGVDILS YP YA LSGTSM+ PHVAG+AA
Sbjct: 163 ASFSSTGPE--------VELAAPGVDILSTYPN------NDYAYLSGTSMATPHVAGVAA 208
Query: 532 LIKSLHRDWSPAAIRSALVTT 552
L+ S + + A +R AL T
Sbjct: 209 LVWSKRPELTNAQVRQALNKT 229
Score = 49.1 bits (118), Expect = 3e-06
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 205 INASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDA-DVLKAFDKAIHDGVDVLSVS 263
I A N + G AP A L K D G D++ + AI +G+D++++S
Sbjct: 50 IAALDNGVGVV------GVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMS 103
Query: 264 IGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTA--PWIITVGAT 321
+G AI +A GI VV++AGN G + A P +I VGA
Sbjct: 104 LGGPSD-----SPALREAIKKAYA--AGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAV 156
Query: 322 TIDR 325
+
Sbjct: 157 DSNN 160
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family. Subtilases are a family
of serine proteases. They appear to have independently
and convergently evolved an Asp/Ser/His catalytic triad,
like that found in the trypsin serine proteases (see
pfam00089). Structure is an alpha/beta fold containing a
7-stranded parallel beta sheet, order 2314567.
Length = 277
Score = 94.3 bits (235), Expect = 4e-21
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 6/93 (6%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+A FS+ G KPDIVAPG +ILS+ P D+ GY SGTSM+ P VAG
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNILSSGP---GGDLGGYDSHSGTSMAAPLVAGA 229
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMN 562
AAL+ S + +P +R+ LVTTA+ G+ G++
Sbjct: 230 AALLLSANPSLTPETLRALLVTTATDLGSMGLD 262
Score = 55.4 bits (134), Expect = 4e-08
Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 22/189 (11%)
Query: 143 IIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIM 202
+G++DTG+ S + + + + + N G + GI
Sbjct: 1 TVGVLDTGIDVNHPDLSGR-YIGLAYRNGYDFVDNDPDPTPDDDNNG--HGTH--VAGI- 54
Query: 203 DMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI--HDGVDVL 260
I A N G G AP A L K G TD+++ A + A + + V+
Sbjct: 55 --IAAGDNNGSG-----GVGVAPNAKLESVKVLPGSGGTDSELAGAIEWAAERPNDIRVI 107
Query: 261 SVSIGNEI-PLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAP---W-I 315
++S+G P S+ D +A+ A KG V +AGN G A + P I
Sbjct: 108 NMSLGPVDGPPSSWSSAIDELAVNG--ADNKGSLFVVAAGNGGDYADNNPVSDPASANNI 165
Query: 316 ITVGATTID 324
ITVGA T +
Sbjct: 166 ITVGAVTEN 174
>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain,
uncharacterized subfamily 1. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 264
Score = 91.1 bits (227), Expect = 3e-20
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPI---GSKDIQGYALLSGTSMSCPHV 526
++ FSSRGP +KPD+VAPG +I+S P G+ GY +SGTSM+ PHV
Sbjct: 179 GISYFSSRGPTGD--GRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHV 236
Query: 527 AGIAALIKSLHRDWSPAAIRSALVTTA 553
+G AL+ + +P ++ L TA
Sbjct: 237 SGAIALLLQANPILTPDEVKCILRDTA 263
Score = 63.0 bits (154), Expect = 1e-10
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 29/202 (14%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G+G + ++DTG+ F + + + + + N G +
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDGRIIR------FADFVNTVNGRTTPYDDN----GHGTHV 50
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAI---- 253
GI+ A + + G +G AP A+L K D G +++D++ D +
Sbjct: 51 AGII----AGSGRA---SNGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNE 103
Query: 254 HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN--T 311
+ V+++S+G D + GI VV +AGN GP TI +
Sbjct: 104 KYNIRVVNLSLGAP---PDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGN 160
Query: 312 APWIITVGATTIDRAFPTAITL 333
+P +ITVGA D P +
Sbjct: 161 SPKVITVGAV--DDNGPHDDGI 180
>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain,
uncharacterized subfamily 5. gap in seq This family is
a member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 312
Score = 90.7 bits (226), Expect = 1e-19
Identities = 50/120 (41%), Positives = 62/120 (51%), Gaps = 15/120 (12%)
Query: 472 ASFSSRGP-NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
+ FSS GP N + LKPD+ APG +ILS YP GYA+LSGTSM+ P+VAG A
Sbjct: 189 SYFSSWGPTNELY---LKPDVAAPGGNILSTYP----LAGGGYAVLSGTSMATPYVAGAA 241
Query: 531 ALIKSLHR-DWSPAAIRSALVTTASQT-GTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
AL+ SPA +R L +TA +DG + A G G VN KA
Sbjct: 242 ALLIQARHGKLSPAELRDLLASTAKPLPWSDG-----TSALPDLAPVAQQGAGLVNAYKA 296
Score = 45.3 bits (108), Expect = 9e-05
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 222 GGAPLAHLAIYKACWDIGCTDADVL-KAFDKAIHDGVDVLSVSIG-----NEIPLFSYID 275
G AP A L Y+ G T D + AF +A DG DV++ S+G +E P + +
Sbjct: 89 GVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSGWSEDPW-AVVA 147
Query: 276 QRDSIAIGSFHAIAKGITVVSSAGNDG 302
R I G+ V +AGNDG
Sbjct: 148 SR--IV-------DAGVVVTIAAGNDG 165
>gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9. This family
includes the proteinase B inhibitor from Saccharomyces
cerevisiae and the activation peptides from peptidases
of the subtilisin family. The subtilisin propeptides are
known to function as molecular chaperones, assisting in
the folding of the mature peptidase, but have also been
shown to act as 'temporary inhibitors'.
Length = 76
Score = 82.0 bits (203), Expect = 4e-19
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 34 VHIVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAE 93
+IV K A+ SH + ++ +EAA SILYSYKHGF+GFAA+LT+ +AE
Sbjct: 1 TYIVKF--KDGVSKAAVFSSHKSWHASSK--EEAAGASILYSYKHGFNGFAAKLTEEEAE 56
Query: 94 KIAELPGVVQVIPNGILKLH 113
K+ + P V V P+ +++LH
Sbjct: 57 KLRKHPDVEYVEPDQVVELH 76
>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain
in Subtilisin-like proteins. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 259
Score = 85.3 bits (212), Expect = 3e-18
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 13/87 (14%)
Query: 467 VSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHV 526
+ +ASFS+ G ++ D+ APGVDILS P GY +SGTSM+ PHV
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDILSTSPG------GGYGYMSGTSMATPHV 231
Query: 527 AGIAALIKSLHRDWSPAAIRSALVTTA 553
AG AAL+ SL+ + + A I+ A++++A
Sbjct: 232 AGAAALLLSLNPNLTAAQIKDAILSSA 258
Score = 45.6 bits (109), Expect = 5e-05
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 241 TDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGN 300
T +D +KA D A+ G +++ S G P + RD+IA AI GI V++AGN
Sbjct: 105 TTSDAIKAIDYAVDMGAKIINNSWGGGGPSQAL---RDAIA----RAIDAGILFVAAAGN 157
Query: 301 DG---------PVAQTIVNTAPWIITVGATTID 324
DG P + II+V AT +
Sbjct: 158 DGTNNDKTPTYPAS----YDLDNIISVAATDSN 186
>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain,
uncharacterized subfamily 6. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 254
Score = 83.8 bits (207), Expect = 1e-17
Identities = 42/95 (44%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Query: 468 SPRVASFSSRG---------PNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG 518
A FSS G P+S KPD+ APGVD+ SA G+ Y LSG
Sbjct: 161 DDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSA--RQGANGDGQYTRLSG 218
Query: 519 TSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTA 553
TSM+ PHVAG+AAL+ + H D SP I+ AL TA
Sbjct: 219 TSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253
Score = 46.8 bits (111), Expect = 2e-05
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 214 GLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIG----NEIP 269
G A G+ G AP A L K D G + + ++ + A+ DV+S+S+G +E P
Sbjct: 56 GGAKGVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDP 115
Query: 270 LFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGAT 321
L ++ + G V SAGN+G +A ++VGA
Sbjct: 116 LEEAVEALSN---------QTGALFVVSAGNEGHGTSGSPGSAYAALSVGAV 158
>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family
domain in ProteinaseK-like proteins. The peptidase S8
or Subtilase clan of proteases have a Asp/His/Ser
catalytic triad that is not homologous to trypsin. This
CD contains several members of this clan including:
PCSK9 (Proprotein convertase subtilisin/kexin type 9),
Proteinase_K, Proteinase_T, and other subtilisin-like
serine proteases. PCSK9 posttranslationally regulates
hepatic low-density lipoprotein receptors (LDLRs) by
binding to LDLRs on the cell surface, leading to their
degradation. The binding site of PCSK9 has been
localized to the epidermal growth factor-like repeat A
(EGF-A) domain of the LDLR. Characterized Proteinases K
are secreted endopeptidases with a high degree of
sequence conservation. Proteinases K are not
substrate-specific and function in a wide variety of
species in different pathways. It can hydrolyze keratin
and other proteins with subtilisin-like specificity. The
number of calcium-binding motifs found in these differ.
Proteinase T is a novel proteinase from the fungus
Tritirachium album Limber. The amino acid sequence of
proteinase T as deduced from the nucleotide sequence is
about 56% identical to that of proteinase K.
Length = 255
Score = 82.2 bits (204), Expect = 3e-17
Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
ASFS+ G V DI APGVDILSA+ IGS A LSGTSM+ PHVAG+
Sbjct: 182 ARASFSNYGS-----CV---DIFAPGVDILSAW--IGSDT--ATATLSGTSMAAPHVAGL 229
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
AA + SL D SPA +++ L+ A++
Sbjct: 230 AAYLLSLGPDLSPAEVKARLLNLATK 255
Score = 39.4 bits (93), Expect = 0.005
Identities = 49/244 (20%), Positives = 79/244 (32%), Gaps = 78/244 (31%)
Query: 124 HYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFN 183
+S+ G G + ++DTG+ F +
Sbjct: 9 RDLPLDGTYYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------- 46
Query: 184 SSNCNRKLIGARWFIKGIMDMINASTNTDE--------GLAAGLARGGAPLAHLAIYKA- 234
A W D + ++D G G G A A+L K
Sbjct: 47 ----------AIWGA----DFVGGDPDSDCNGHGTHVAGTVGGKTYGVAKKANLVAVKVL 92
Query: 235 -CWDIGCTDADVLKAFDKAIHDGVD-----VLSVSIG---NEIPLFSYIDQRDSIAIGSF 285
C G + ++ + +D V ++S+G + +D A+ +
Sbjct: 93 DCNGSGTL-SGIIAGLEWVANDATKRGKPAVANMSLGGGASTA-----LDA----AVAA- 141
Query: 286 HAIAKGITVVSSAGNDGPVAQTIVN-TAPWIITVGATTID--RAFPTAITLGNHQVLWGQ 342
A+ G+ VV +AGN A +AP ITVGAT D RA + N +G
Sbjct: 142 -AVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSDDARASFS-----N----YGS 191
Query: 343 SIDI 346
+DI
Sbjct: 192 CVDI 195
>gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family
domain in BacillopeptidaseF-like proteins. Bacillus
subtilis produces and secretes proteases and other types
of exoenzymes at the end of the exponential phase of
growth. The ones that make up this group is known as
bacillopeptidase F, encoded by bpr, a serine protease
with high esterolytic activity which is inhibited by
PMSF. Like other members of the peptidases S8 family
these have a Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of these enzymes may be enhanced
by calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity.
Length = 264
Score = 81.3 bits (201), Expect = 7e-17
Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+A FSSRGP++ KPDI APGV+I SA P GY SGTSM+ PHVAG+
Sbjct: 186 VLADFSSRGPSTYGRI--KPDISAPGVNIRSAVPG------GGYGSSSGTSMAAPHVAGV 237
Query: 530 AALIKS 535
AAL+ S
Sbjct: 238 AALLWS 243
Score = 33.5 bits (77), Expect = 0.38
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 289 AKGITVVSSAGNDGPVAQTIVNTAPWI----ITVGATTIDRA 326
A GI V +AGNDGP T+ N P VGAT +
Sbjct: 146 AAGIFPVFAAGNDGPRCSTL-NAPPANYPESFAVGATDRNDV 186
>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53
families. Members of the peptidases S8 (subtilisin and
kexin) and S53 (sedolisin) family include endopeptidases
and exopeptidases. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. Serine acts
as a nucleophile, aspartate as an electrophile, and
histidine as a base. The S53 family contains a catalytic
triad Glu/Asp/Ser with an additional acidic residue Asp
in the oxyanion hole, similar to that of subtilisin.
The serine residue here is the nucleophilic equivalent
of the serine residue in the S8 family, while glutamic
acid has the same role here as the histidine base.
However, the aspartic acid residue that acts as an
electrophile is quite different. In S53, it follows
glutamic acid, while in S8 it precedes histidine. The
stability of these enzymes may be enhanced by calcium;
some members have been shown to bind up to 4 ions via
binding sites with different affinity. There is a great
diversity in the characteristics of their members: some
contain disulfide bonds, some are intracellular while
others are extracellular, some function at extreme
temperatures, and others at high or low pH values.
Length = 241
Score = 79.6 bits (196), Expect = 2e-16
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 12/81 (14%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
+ S+ G DI APG DILS+ G GYA LSGTSM+ P VAG+AA
Sbjct: 173 SPSSNGGA--------GVDIAAPGGDILSSPTTGGG----GYATLSGTSMAAPIVAGVAA 220
Query: 532 LIKSLHRDWSPAAIRSALVTT 552
L+ S + D +PA +++AL++T
Sbjct: 221 LLLSANPDLTPAQVKAALLST 241
Score = 66.5 bits (162), Expect = 5e-12
Identities = 54/206 (26%), Positives = 75/206 (36%), Gaps = 33/206 (16%)
Query: 142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARW----F 197
+ +IDTGV P+ G G + +
Sbjct: 1 VTVAVIDTGVDPDHPDLDG-----------LFGGGDGGNDDDDNENGPTDPDDGNGHGTH 49
Query: 198 IKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHD- 255
+ GI I AS N G G AP A L K G + +D+ A D A D
Sbjct: 50 VAGI---IAASANNGGG------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQ 100
Query: 256 GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN---TA 312
G DV+++S+G S AI A G+ VV++AGNDGP T + +
Sbjct: 101 GADVINLSLGGPGSPPSSALSE---AIDYALA-KLGVLVVAAAGNDGPDGGTNIGYPAAS 156
Query: 313 PWIITVGATTIDRAFPTAITLGNHQV 338
P +I VGA D + + G V
Sbjct: 157 PNVIAVGAVDRDGTPASPSSNGGAGV 182
>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in
Kp43 proteases. Kp43 proteases are members of the
peptidase S8 or Subtilase clan of proteases. They have
an Asp/His/Ser catalytic triad similar to that found in
trypsin-like proteases, but do not share their
three-dimensional structure (an example of convergent
evolution). Kp43 is topologically similar to kexin and
furin both of which are proprotein convertases, but
differ in amino acids sequence and the position of its
C-terminal barrel. Kp43 has 3 Ca2+ binding sites that
differ from the corresponding sites in the other known
subtilisin-like proteases. KP-43 protease is known to
be an oxidation-resistant protease when compared with
the other subtilisin-like proteases.
Length = 293
Score = 78.5 bits (194), Expect = 9e-16
Identities = 41/101 (40%), Positives = 51/101 (50%), Gaps = 21/101 (20%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYP---PIGSKDIQGYALLSGTSMSCP 524
S VASFSSRGP +KPD+VAPG ILSA IG Y SGTSM+ P
Sbjct: 198 SDTVASFSSRGP--TYDGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKSGTSMATP 255
Query: 525 HVAGIAALIKSLHRDW------------SPAAIRSALVTTA 553
VAG AAL+ R + S A +++ L+ +A
Sbjct: 256 LVAGAAALL----RQYFVDGYYPTKFNPSAALLKALLINSA 292
Score = 33.1 bits (76), Expect = 0.65
Identities = 51/215 (23%), Positives = 72/215 (33%), Gaps = 68/215 (31%)
Query: 138 MGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCN-RKLIGARW 196
G+G I+G+ DTG+ F D FN +N RK++
Sbjct: 5 TGKGQIVGVADTGLDTNHCFFYDP-------------------NFNKTNLFHRKIV---- 41
Query: 197 FIKGIMDMINASTNTDE---------GLAAG---------LARGGAPLAHLAIYKACWDI 238
+ S D+ G+ AG L +G AP A L DI
Sbjct: 42 ------RYDSLSDTKDDVDGHGTHVAGIIAGKGNDSSSISLYKGVAPKAKLYFQ----DI 91
Query: 239 GCTDA------DVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQR--DSIAIGSFHAIAK 290
G T D+ K F G + S S G+ + + R D A
Sbjct: 92 GDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYN-----NP 146
Query: 291 GITVVSSAGNDGPVAQTIVNTAPW---IITVGATT 322
I V SAGNDG + + ++TVGA+
Sbjct: 147 DILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASN 181
>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain
in Thermitase-like proteins. Thermitase is a
non-specific, trypsin-related serine protease with a
very high specific activity. It contains a subtilisin
like domain. The tertiary structure of thermitase is
similar to that of subtilisin BPN'. It contains a
Asp/His/Ser catalytic triad. Members of the peptidases
S8 (subtilisin and kexin) and S53 (sedolisin) clan
include endopeptidases and exopeptidases. The S8 family
has an Asp/His/Ser catalytic triad similar to that found
in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. Serine acts as a nucleophile, aspartate as an
electrophile, and histidine as a base. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of subtilisin. The serine residue here
is the nucleophilic equivalent of the serine residue in
the S8 family, while glutamic acid has the same role
here as the histidine base. However, the aspartic
acid residue that acts as an electrophile is quite
different. In S53 the it follows glutamic acid, while
in S8 it precedes histidine. The stability of these
enzymes may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. There is a great diversity in the
characteristics of their members: some contain disulfide
bonds, some are intracellular while others are
extracellular, some function at extreme temperatures,
and others at high or low pH values.
Length = 260
Score = 76.9 bits (190), Expect = 2e-15
Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 15/86 (17%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
ASFS+ G D+ APG ILS P YA +SGTSM+ PHVAG+AA
Sbjct: 190 ASFSNYGKWV--------DVSAPGGGILSTTP------DGDYAYMSGTSMATPHVAGVAA 235
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTG 557
L+ S S + +R AL TA G
Sbjct: 236 LLYSQGP-LSASEVRDALKKTADDIG 260
Score = 36.9 bits (86), Expect = 0.031
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 205 INASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVS 263
I A+TN G+A G AP A + K G + AD+ A G V+++S
Sbjct: 78 IAAATNNGTGVA-----GVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLS 132
Query: 264 IGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTI 323
+G L S +++I +A KG+ VV++AGN+G + + P I V AT
Sbjct: 133 LGG--GLGSTA-LQEAIN----YAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ 185
Query: 324 DR 325
D
Sbjct: 186 DD 187
>gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in
CspA-like proteins. GSP (germination-specific protease)
converts the spore peptidoglycan hydrolase (SleC)
precursor to an active enzyme during germination of
Clostridium perfringens S40 spores. Analysis of an
enzyme fraction of GSP showed that it was composed of a
gene cluster containing the processed forms of products
of cspA, cspB, and cspC which are positioned in a tandem
array just upstream of the 5' end of sleC. The amino
acid sequences deduced from the nucleotide sequences of
the csp genes showed significant similarity and showed a
high degree of homology with those of the catalytic
domain and the oxyanion binding region of
subtilisin-like serine proteases. Members of the
peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser. The stability of these enzymes may be
enhanced by calcium, some members have been shown to
bind up to 4 ions via binding sites with different
affinity. Some members of this clan contain disulfide
bonds. These enzymes can be intra- and extracellular,
some function at extreme temperatures and pH values.
Length = 455
Score = 77.7 bits (192), Expect = 7e-15
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
+A FS RGP +KPDI APGV+IL+A P GY SGTS++ VAG
Sbjct: 359 IAIFSGRGPTRDG--RIKPDIAAPGVNILTASP------GGGYTTRSGTSVAAAIVAGAC 410
Query: 531 ALI 533
AL+
Sbjct: 411 ALL 413
Score = 31.4 bits (72), Expect = 2.5
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 138 MGEGTIIGIIDTGV 151
G+G ++GIIDTG+
Sbjct: 2 TGKGVLVGIIDTGI 15
>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in
Streptococcal C5a peptidases. Streptococcal C5a
peptidase (SCP), is a highly specific protease and
adhesin/invasin. The subtilisin-like protease domain is
located at the N-terminus and contains a
protease-associated domain inserted into a loop. There
are three fibronectin type III (Fn) domains at the
C-terminus. SCP binds to integrins with the help of
Arg-Gly-Asp motifs which are thought to stabilize
conformational changes required for substrate binding.
Peptidases S8 or Subtilases are a serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 346
Score = 70.8 bits (174), Expect = 6e-13
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 449 ARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSK 508
A + ++S + + +++ FSS GP LKPDI APG +I S
Sbjct: 213 ADDVLT-VASANKKVPNPNGGQMSGFSSWGP--TPDLDLKPDITAPGGNIYSTVND---- 265
Query: 509 DIQGYALLSGTSMSCPHVAGIAALIKS 535
Y +SGTSM+ PHVAG +AL+K
Sbjct: 266 --NTYGYMSGTSMASPHVAGASALVKQ 290
Score = 48.0 bits (115), Expect = 1e-05
Identities = 59/247 (23%), Positives = 94/247 (38%), Gaps = 41/247 (16%)
Query: 139 GEGTIIGIIDTGVWPESESF-----SDKGMGQAPVPPHWKGICQKGEKFNSS-------N 186
GEG ++ +ID+GV P ++F S + K G+ +N
Sbjct: 10 GEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYA 69
Query: 187 CNRKLIGAR-------WFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYK---ACW 236
N I + GI + N DE +G AP A L K
Sbjct: 70 DNNDDILDEDDGSSHGMHVAGI-----VAGNGDEEDNGEGIKGVAPEAQLLAMKVFSNPE 124
Query: 237 DIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVS 296
D KA + A+ G DV+++S+G+ F +D + AI A G+ VV
Sbjct: 125 GGSTYDDAYAKAIEDAVKLGADVINMSLGS-TAGFVDLDDPEQQAIKR--AREAGVVVVV 181
Query: 297 SAGNDG----PVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHG 352
+AGNDG ++ + P TVG+ +T+ + + + G++S G
Sbjct: 182 AAGNDGNSGSGTSKPLATNNPDTGTVGSPA---TADDVLTVASANKKVP-NPNGGQMS-G 236
Query: 353 FT--GLT 357
F+ G T
Sbjct: 237 FSSWGPT 243
>gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain,
uncharacterized subfamily 12. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 297
Score = 68.6 bits (168), Expect = 2e-12
Identities = 36/97 (37%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
R +FS+ S + DI APGVDI+SA P GY +SGTSM+ PHVAG+
Sbjct: 198 RTGNFSAVANFSNG----EVDIAAPGVDIVSAAPG------GGYRSMSGTSMATPHVAGV 247
Query: 530 AALI-------KSLHRDWSPAAIRSALVTTASQTGTD 559
AAL A +A TT G D
Sbjct: 248 AALWAEALPKAGGRALAALLQARLTAARTTQFAPGLD 284
>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine
protease mycosin. Members of this family are
subtilisin-related serine proteases, found strictly in
the Actinobacteria and associated with type VII
secretion operons. The designation mycosin is used for
members from Mycobacterium [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair].
Length = 350
Score = 64.3 bits (157), Expect = 9e-11
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 26/117 (22%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAA 531
+SFS GP D+ APG +I+S P G A SGTS + P V+G AA
Sbjct: 191 SSFSLPGP--------WVDLAAPGENIVSLSPGGD-----GLATTSGTSFAAPFVSGTAA 237
Query: 532 LIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
L++S D + A +R + TA G + +G G V+P A
Sbjct: 238 LVRSRFPDLTAAQVRRRIEATADHPARGGRD-------------DYVGYGVVDPVAA 281
Score = 33.5 bits (77), Expect = 0.50
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 252 AIHDGVDVLSVSIGNEIPLFSYIDQRD-SIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN 310
A G DV+++S+ +P S D + A+ +A+ KG+ VV++AGN G Q
Sbjct: 112 AADLGADVINISLVACLPAGSGADDPELGAAVR--YALDKGVVVVAAAGNTGGDGQKTTV 169
Query: 311 TAP-W---IITVGATTIDR 325
P W ++ VG+ IDR
Sbjct: 170 VYPAWYPGVLAVGS--IDR 186
>gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family
domain in Fervidolysin. Fervidolysin found in
Fervidobacterium pennivorans is an extracellular
subtilisin-like keratinase. It is contains a signal
peptide, a propeptide, and a catalytic region. The
tertiary structure of fervidolysin is similar to that of
subtilisin. It contains a Asp/His/Ser catalytic triad
and is a member of the peptidase S8 (subtilisin and
kexin) family. The catalytic triad is similar to that
found in trypsin-like proteases, but it does not share
their three-dimensional structure and are not homologous
to trypsin. Serine acts as a nucleophile, aspartate as
an electrophile, and histidine as a base. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of subtilisin. The serine residue here
is the nucleophilic equivalent of the serine residue in
the S8 family, while glutamic acid has the same role
here as the histidine base. However, the aspartic acid
residue that acts as an electrophile is quite different.
In S53, it follows glutamic acid, while in S8 it
precedes histidine. The stability of these enzymes may
be enhanced by calcium; some members have been shown to
bind up to 4 ions via binding sites with different
affinity. There is a great diversity in the
characteristics of their members: some contain disulfide
bonds, some are intracellular while others are
extracellular, some function at extreme temperatures,
and others at high or low pH values.
Length = 273
Score = 62.9 bits (153), Expect = 1e-10
Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVD-ILSAYPPIGSKDIQGYALLSGTSMSCPHVAG 528
ASFS+ G DI APGV ILS P + Y LSGTSM+ PHV+G
Sbjct: 197 NKASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGGGNYEYLSGTSMAAPHVSG 248
Query: 529 IAALIKSLHRDW-SPAAIRSALVTT 552
+AAL+ S D +P IR L +
Sbjct: 249 VAALVLSKFPDVFTPEQIRKLLEES 273
>gnl|CDD|240358 PTZ00321, PTZ00321, ribosomal protein L11; Provisional.
Length = 342
Score = 62.3 bits (151), Expect = 4e-10
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD--KAGYVIPVEITV 863
K+VL + ++AGKA PPVG G+ M F K +N RT K + V I V
Sbjct: 47 KRVLHNWRFFIKAGKAATGPPVGQEFSKLGLKAMDFAKSFNDRTKPHFKDDVELIVRIQV 106
Query: 864 YDDRSFTFILKTPPASVLLLKAAGVEKGSKDP---KQQKVGKITIEQLRAIATEK---LP 917
Y D+S+ F ++ PP + +L+A ++ P + +T+E IA K
Sbjct: 107 YFDKSYLFTIEPPPTAWFILRALRKKRRETGPVPLRGHYCALMTLEMAYEIAKMKPRSWG 166
Query: 918 DLNCTSIESAMRIIAGTAANMGIDI 942
IE+ +R + G A MG+
Sbjct: 167 RPEYPLIETRVRRVVGQARRMGVCF 191
>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 508
Score = 62.6 bits (151), Expect = 6e-10
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 467 VSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ-GYALLSGTSMSCPH 525
+S VASFS+ G + DI APGV+ILS Y LSGTSM+ PH
Sbjct: 314 LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDGADYVTLSGTSMAAPH 367
Query: 526 VAGIAALIKSLH-RDWSPAAIRSALVTTASQTGTDG 560
V+G+AAL+ S + + +PA +R+ +VTTA T G
Sbjct: 368 VSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSG 403
Score = 37.2 bits (85), Expect = 0.044
Identities = 42/192 (21%), Positives = 67/192 (34%), Gaps = 27/192 (14%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G+G + +IDTGV + G G+ G +
Sbjct: 141 GKGVTVAVIDTGVDASHPDLAGSA--------VAGGDFVDGDPEPP---FLDDNGHGTHV 189
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAI--HDG 256
G I A + AG+A G L + +DV + + A
Sbjct: 190 AGT---IAAVIFDNGAGVAGVAPGAKLLLVKVLGSGGGSGEL--SDVAEGIEGAANLGGP 244
Query: 257 VDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPW-- 314
DV+++S+G + + D++A A A G+ +V++AGNDG A P
Sbjct: 245 ADVINLSLGGSLSDSASPALGDALAAA---ANAGGVVIVAAAGNDGSNASGGDLAYPASY 301
Query: 315 ----IITVGATT 322
+I VGA
Sbjct: 302 PAPNVIAVGALD 313
>gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain,
uncharacterized subfamily 13. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 285
Score = 60.0 bits (146), Expect = 1e-09
Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 17/90 (18%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG---------YALLSGTSMS 522
AS+S+ GP AV D+ APG D S G D Y L GTSM+
Sbjct: 204 ASYSNYGP-----AV---DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMA 255
Query: 523 CPHVAGIAALIKSLHRDWSPAAIRSALVTT 552
PHVAG+AAL+KS++ +PA I S L +T
Sbjct: 256 APHVAGVAALMKSVNPSLTPAQIESLLQST 285
Score = 33.4 bits (77), Expect = 0.46
Identities = 49/220 (22%), Positives = 77/220 (35%), Gaps = 56/220 (25%)
Query: 141 GTIIGIIDTGVWPESESFSDK----------------GMGQAPVPPHWKGICQKGEKFNS 184
G ++ ++DTGV + G G+ P +
Sbjct: 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPG 60
Query: 185 SNCNRKLIGARW---FIKGIMDMINASTNTDEGLAAGLARGGAPLA---HLAIYKACWDI 238
C + + W + G I A TN G+A G A A + + C
Sbjct: 61 GFCGSGVSPSSWHGTHVAGT---IAAVTNNGVGVA-----GVAWGARILPVRVLGKC--- 109
Query: 239 GCTDADVLKAFDKA---IHDGV-------DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAI 288
G T +D++ A GV V+++S+G + S Q AI
Sbjct: 110 GGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGAC-SATMQN---AIND--VR 163
Query: 289 AKGITVVSSAGNDGPVAQTIVNTAPW----IITVGATTID 324
A+G+ VV +AGN+G + AP +I VGAT +
Sbjct: 164 ARGVLVVVAAGNEG---SSASVDAPANCRGVIAVGATDLR 200
>gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family.
Members of the peptidase S53 (sedolisin) family include
endopeptidases and exopeptidases. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of Asn in subtilisin. The stability of
these enzymes may be enhanced by calcium, some members
have been shown to bind up to 4 ions via binding sites
with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values. Characterized sedolisins include Kumamolisin,
an extracellular calcium-dependent thermostable
endopeptidase from Bacillus. The enzyme is synthesized
with a 188 amino acid N-terminal preprotein region which
is cleaved after the extraction into the extracellular
space with low pH. One kumamolysin paralog,
kumamolisin-As, is believed to be a collagenase. TPP1 is
a serine protease that functions as a tripeptidyl
exopeptidase as well as an endopeptidase. Less is known
about PSCP from Pseudomonas which is thought to be an
aspartic proteinase.
Length = 275
Score = 58.5 bits (142), Expect = 3e-09
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 468 SPRVASFSSRGPNSM---SPAVL-KPDIVAP-GVDILSAYPPIGSKDIQGYALLSGTSMS 522
+ SS P + +P V KPD+ AP GV+ G GTS +
Sbjct: 166 PAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGDG------DGPPNFFGTSAA 219
Query: 523 CPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDG 560
PH AG+AAL+ S + +PA IR AL +TA G G
Sbjct: 220 APHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG 257
Score = 36.1 bits (84), Expect = 0.068
Identities = 48/202 (23%), Positives = 61/202 (30%), Gaps = 42/202 (20%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G G IG+I G ++ D+ G P + G
Sbjct: 4 GTGIKIGVISDGFDGLGDAADDQASGDLPGNVNVLG------------------------ 39
Query: 199 KGIMDMINASTNTDEGLA-AGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGV 257
D+ S DEG A + AP A LA + A G + D A G
Sbjct: 40 ----DLDGGSGGGDEGRAMLEIIHDIAPGAELAFHTA----GGGELDFAAAIRALAAAGA 91
Query: 258 DVLSVSIG-NEIPLF--SYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTI-VNTAP 313
D++ IG P F I Q + S G+ SSAGNDG AP
Sbjct: 92 DIIVDDIGYLNEPFFQDGPIAQAVDEVVAS-----PGVLYFSSAGNDGQSGSIFGHAAAP 146
Query: 314 WIITVGATTIDRAFPTAITLGN 335
I VGA
Sbjct: 147 GAIAVGAVDYGNTPAFGSDPAP 168
>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain,
uncharacterized subfamily 9. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 261
Score = 57.3 bits (139), Expect = 7e-09
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
ASFSS GP + LKPD++A G I +GTS SCP +AG+
Sbjct: 186 KASFSSIGPTA--DGRLKPDVMALGTGIYVINGD------GNITYANGTSFSCPLIAGLI 237
Query: 531 ALIKSLHRDWSPAAIRSALVTTAS 554
A + H +W+ I+ A++ +AS
Sbjct: 238 ACLWQAHPNWTNLQIKEAILKSAS 261
Score = 51.5 bits (124), Expect = 6e-07
Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 47/205 (22%)
Query: 141 GTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKG 200
G I +ID G E+F+ K + + N +++G F+
Sbjct: 1 GITIAVIDAGFPKVHEAFAFKHLFK----------------------NLRILGEYDFVDN 38
Query: 201 IMDMI----NASTNTDEGLAA---GLARGGAPLAHLAIYKACWDIGCTDADV-----LKA 248
+ + T +A G+ G AP A + + + ++ V + A
Sbjct: 39 SNNTNYTDDDHGTAVLSTMAGYTPGVMVGTAPNASYYLART--EDVASETPVEEDNWVAA 96
Query: 249 FDKAIHDGVDVLSVSIG-----NEIPLFSYIDQRDS---IAIGSFHAIAKGITVVSSAGN 300
+ A GVD++S S+G N ++Y D I+ + A +KG+ VV+SAGN
Sbjct: 97 AEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGN 156
Query: 301 DGPVAQTIVNT---APWIITVGATT 322
+G + A +++VGA
Sbjct: 157 EGSTQWKGIGAPADAENVLSVGAVD 181
>gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain,
uncharacterized subfamily 15. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 242
Score = 56.6 bits (137), Expect = 1e-08
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 472 ASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ---GYALLSGTSMSCPHVAG 528
AS+S+ G D+VAPGV I + GS GY SGTS + P AG
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAG 218
Query: 529 IAALIKSLHRDWSPAAIRSALVTT 552
+AALI S + + +PA + L +T
Sbjct: 219 VAALILSANPNLTPAEVEDILTST 242
Score = 36.9 bits (86), Expect = 0.032
Identities = 45/188 (23%), Positives = 64/188 (34%), Gaps = 34/188 (18%)
Query: 142 TIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGI 201
++ IIDTGV S G+ + P W + + G
Sbjct: 1 VVVAIIDTGVDLNHPDLS----GKPKLVPGWNFVSNNDPTSDIDGHGTACAG-------- 48
Query: 202 MDMINASTNTDEGLAAGLARGGAPLAHL-AIYKACWDIGCTDADVLKAFDKAIHDGVDVL 260
+ A N G+A G AP A L + A +D+ +A A +G DV+
Sbjct: 49 --VAAAVGNNGLGVA-----GVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVI 101
Query: 261 SVSIGNEIPLFSYIDQRDSIAIGSFHAIA------KGITVVSSAGNDGPVAQTIVNTAPW 314
S S G S +I A KG V+ +AGN G + P
Sbjct: 102 SNSWG---GSDSTESISSAI-----DNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPS 153
Query: 315 IITVGATT 322
+I V AT
Sbjct: 154 VIAVAATD 161
>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like,
Peptidase S8 family domain in Autotransporter serine
proteases. Autotransporter serine proteases belong to
Peptidase S8 or Subtilase family. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Autotransporters are a superfamily of outer
membrane/secreted proteins of gram-negative bacteria.
The presence of these subtilisin-like domains in these
autotransporters are may enable them to be
auto-catalytic and may also serve to allow them to act
as a maturation protease cleaving other outer membrane
proteins at the cell surface.
Length = 267
Score = 56.2 bits (136), Expect = 2e-08
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALV 550
+ APG +I S P G+ GY +SGTS + PHV+G AAL+ + +R L+
Sbjct: 208 LAAPGENIYSTDPDGGN----GYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLL 263
Query: 551 TTA 553
TTA
Sbjct: 264 TTA 266
Score = 46.5 bits (111), Expect = 3e-05
Identities = 43/217 (19%), Positives = 65/217 (29%), Gaps = 61/217 (28%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G G +G+ID+G+ F+ + + +
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAGR------------------------------VSEASYY 31
Query: 199 KGIMDMINASTNTDEG--------LAA----GLARGGAPLAHLAIYKACWDIGCT--DAD 244
+ D AS + +AA G G AP A L +A G T DAD
Sbjct: 32 VAVNDAGYASNGDGDSHGTHVAGVIAAARDGGGMHGVAPDATLYSARASASAGSTFSDAD 91
Query: 245 VLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGS--------FHAIAKGITVVS 296
+ A+D GV +++ S G + + A A G V
Sbjct: 92 IAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVF 151
Query: 297 SAGNDGPV-AQTIVNTAPW--------IITVGATTID 324
+AGNDG P+ I V A +
Sbjct: 152 AAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN 188
>gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in
SKI-1-like proteins. SKI-1 (type I membrane-bound
subtilisin-kexin-isoenzyme) proteins are secretory
Ca2+-dependent serine proteinases cleave at nonbasic
residues: Thr, Leu, and Lys. SKI-1s play a critical
role in the regulation of the synthesis and metabolism
of cholesterol and fatty acid metabolism. Members of
the peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser. The stability of these enzymes may be
enhanced by calcium, some members have been shown to
bind up to 4 ions via binding sites with different
affinity. Some members of this clan contain disulfide
bonds. These enzymes can be intra- and extracellular,
some function at extreme temperatures and pH values.
Length = 255
Score = 55.2 bits (133), Expect = 3e-08
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 467 VSPRVASFSSRGPNSMS-PA---VLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMS 522
+A FSSRG + P +KPDIV G + GSK G LSGTS++
Sbjct: 162 FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGV------YGSKLKGGCRALSGTSVA 215
Query: 523 CPHVAGIAA-LIKSLHRDWS---PAAIRSALVTTASQ 555
P VAG A L+ ++ PA+++ AL+ +A++
Sbjct: 216 SPVVAGAVALLLSTVPEKRDLINPASMKQALIESATR 252
Score = 46.3 bits (110), Expect = 3e-05
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 49/195 (25%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G G + + DTG+ + PH++ + ++ N + L G F+
Sbjct: 7 GAGVKVAVFDTGL-AKDH-------------PHFRNVKERTNWTNEKTLDDGL-GHGTFV 51
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADV------LKAFDKA 252
G++ AS+ G AP A + I++ T+ V L AF+ A
Sbjct: 52 AGVI----ASSREQ-------CLGFAPDAEIYIFRVF-----TNNQVSYTSWFLDAFNYA 95
Query: 253 IHDGVDVLSVSIGNEIPLF---SYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV 309
I +DVL++SIG P F ++D+ + A I +VS+ GNDGP+ T+
Sbjct: 96 ILTKIDVLNLSIGG--PDFMDKPFVDKVWELT-------ANNIIMVSAIGNDGPLYGTLN 146
Query: 310 NTAPWIITVGATTID 324
N A + +G ID
Sbjct: 147 NPADQMDVIGVGGID 161
>gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family
domain in Subtilisin_Novo-like proteins. Subtilisins
are a group of alkaline proteinases originating from
different strains of Bacillus subtilis. Novo is one of
the strains that produced enzymes belonging to this
group. The enzymes obtained from the Novo and BPN'
strains are identical. The Carlsburg and Novo
subtilisins are thought to have arisen from a common
ancestral protein. They have similar peptidase and
esterase activities, pH profiles, catalyze
transesterification reactions, and are both inhibited by
diispropyl fluorophosphate, though they differ in 85
positions in the amino acid sequence. Members of the
peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser with an additional acidic residue Asp in the
oxyanion hole, similar to that of subtilisin.. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values.
Length = 291
Score = 54.3 bits (131), Expect = 1e-07
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
VA+FS+ G ++ D+ APG I S P Y SGTSM+ P V+G+A
Sbjct: 221 VANFSNYGKKNV-------DVFAPGERIYSTTPD------NEYETDSGTSMAAPVVSGVA 267
Query: 531 ALIKS 535
ALI S
Sbjct: 268 ALIWS 272
Score = 30.0 bits (68), Expect = 6.0
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 242 DADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGND 301
D D+ A A+ +G V+++S G D+I +A +KG+ +V +AGND
Sbjct: 127 DKDIANAIRYAVDNGAKVINMSFGKSFSPNKEW-VDDAIK----YAESKGVLIVHAAGND 181
Query: 302 G 302
G
Sbjct: 182 G 182
>gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8
family domain in Tripeptidyl aminopeptidases_II.
Tripeptidyl aminopeptidases II are member of the
peptidase S8 or Subtilase family. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Tripeptidyl aminopeptidase II removes tripeptides from
the free N terminus of oligopeptides as well as having
endoproteolytic activity. Some tripeptidyl
aminopeptidases have been shown to cleave tripeptides
and small peptides, e.g. angiotensin II and glucagon,
while others are believed to be involved in MHC I
processing.
Length = 412
Score = 53.8 bits (130), Expect = 3e-07
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 475 SSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALI- 533
SSRGP + L I APG A + + +QG L++GTSMS P+ G AL+
Sbjct: 333 SSRGP--TADGALGVSISAPG----GAIASVPNWTLQGSQLMNGTSMSSPNACGGIALLL 386
Query: 534 ---KSLHRDWSPAAIRSALVTTA 553
K+ ++P ++R AL TA
Sbjct: 387 SGLKAEGIPYTPYSVRRALENTA 409
Score = 33.4 bits (77), Expect = 0.58
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Query: 291 GITVVSSAGNDGPVAQTIVN----TAPWIITVGA 320
G+ VSSAGN+GP A + V T +I VGA
Sbjct: 276 GVIFVSSAGNNGP-ALSTVGAPGGTTSSVIGVGA 308
>gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain,
uncharacterized subfamily 4. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 239
Score = 48.8 bits (117), Expect = 4e-06
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 490 DIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
D APGVD+ A P G GY +SGTS + P V AL+ P R+ L
Sbjct: 168 DFAAPGVDVWVA-APGG-----GYRYVSGTSFAAPFVTAALALLLQASPLA-PDDARARL 220
Query: 550 VTTASQTGTDG 560
TA G G
Sbjct: 221 AATAKDLGPPG 231
Score = 31.5 bits (72), Expect = 1.5
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 217 AGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIG---NEIPLFSY 273
GL G +A G + + +A D GV V+++S+ N +
Sbjct: 54 PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPNAL----- 108
Query: 274 IDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQ 306
+ ++A A A+G+ +V++AGNDGP A
Sbjct: 109 LAA--AVAA----AAARGMVLVAAAGNDGPAAP 135
>gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8
family domain in Lantiobiotic (lanthionine-containing
antibiotics) specific proteases. Lantiobiotic
(lanthionine-containing antibiotics) specific proteases
are very similar in structure to serine proteases.
Lantibiotics are ribosomally synthesised antimicrobial
agents derived from ribosomally synthesised peptides
with antimicrobial activities against Gram-positive
bacteria. The proteases that cleave the N-terminal
leader peptides from lantiobiotics include: epiP, nsuP,
mutP, and nisP. EpiP, from Staphylococcus, is thought
to cleave matured epidermin. NsuP, a dehydratase from
Streptococcus and NisP, a membrane-anchored
subtilisin-like serine protease from Lactococcus cleave
nisin. MutP is highly similar to epiP and nisP and is
thought to process the prepeptide mutacin III of S.
mutans. Members of the peptidases S8 (subtilisin and
kexin) and S53 (sedolisin) clan include endopeptidases
and exopeptidases. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. Serine acts
as a nucleophile, aspartate as an electrophile, and
histidine as a base. The S53 family contains a catalytic
triad Glu/Asp/Ser with an additional acidic residue Asp
in the oxyanion hole, similar to that of subtilisin.
The serine residue here is the nucleophilic equivalent
of the serine residue in the S8 family, while glutamic
acid has the same role here as the histidine base.
However, the aspartic acid residue that acts as an
electrophile is quite different. In S53 the it follows
glutamic acid, while in S8 it precedes histidine. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. There is a great
diversity in the characteristics of their members: some
contain disulfide bonds, some are intracellular while
others are extracellular, some function at extreme
temperatures, and others at high or low pH values.
Length = 294
Score = 48.1 bits (115), Expect = 1e-05
Identities = 40/170 (23%), Positives = 62/170 (36%), Gaps = 28/170 (16%)
Query: 144 IGIIDTGVWP----ESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIK 199
+ +ID+G+ P S S + K + KG I
Sbjct: 4 VAVIDSGIDPDHPDLKNSISS----------YSKNLVPKGGYDGKEAGETGDINDIVDKL 53
Query: 200 GIMDMINASTNTDEGLAAGLARGGAPLAHLAIYK-ACWDIGCTDADVLKAFDKAIHDGVD 258
G + + + G AP + Y+ + ++KA A DGVD
Sbjct: 54 GHGTAVAGQIAANGNIK-----GVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVD 108
Query: 259 VLSVSIG-NEIPLFSYIDQRDSI-----AIGSFHAIAKGITVVSSAGNDG 302
V+++S+G I Y D AI +A +KG VV++AGNDG
Sbjct: 109 VINLSLGGYLIIGGEYEDDDVEYNAYKKAIN--YAKSKGSIVVAAAGNDG 156
Score = 37.7 bits (88), Expect = 0.021
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 25/82 (30%)
Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDI-----------------QGY 513
++SFS+ G + + D+ APG D G + GY
Sbjct: 203 LSSFSNYGNSRI-------DLAAPGGD-FLLLDQYGKEKWVNNGLMTKEQILTTAPEGGY 254
Query: 514 ALLSGTSMSCPHVAGIAALIKS 535
A + GTS++ P V+G ALI
Sbjct: 255 AYMYGTSLAAPKVSGALALIID 276
>gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional.
Length = 639
Score = 48.0 bits (114), Expect = 2e-05
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAI----R 546
+ APG +I S +P Y L+GTSM+ PHVA IA+LI S++ S + +
Sbjct: 534 LAAPGTNIYSTFP------KNSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILK 587
Query: 547 SALVTTAS 554
++V S
Sbjct: 588 ESIVQLPS 595
>gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain,
uncharacterized subfamily 14. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 311
Score = 47.1 bits (112), Expect = 2e-05
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 471 VASFSSRGPNSMSPA-VLKPDIVAPGVDILSAYPPIGSKDIQG----YALLSGTSMSCPH 525
V S+SSRGP S A KPD+ A G + + S + L GTSM+ P
Sbjct: 221 VVSWSSRGP---SIAGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPM 277
Query: 526 VAGIAALIKSLHRD------WSPAAIRSALVTTA 553
AG AAL+ S ++ + P +R+ L++TA
Sbjct: 278 TAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
Score = 35.9 bits (83), Expect = 0.072
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 257 VDVLSVSIGNE-IPLFSYIDQRDSIA-IGSFHAIAKGITVVSSAGNDGPVAQTIVNTAP- 313
VDV+S S G Y D + + G+ +VS+AGN GP TI TAP
Sbjct: 132 VDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTI--TAPG 189
Query: 314 ---WIITVGATTIDRAFPTAITLGNHQVLWGQSID 345
I+VGA T + + G G +
Sbjct: 190 AASLAISVGAAT-NFDYRPFYLFGYLPGGSGDVVS 223
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 45.9 bits (109), Expect = 8e-05
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH----RDWSPAAIR 546
I+APG +IL A P G + ++ LSGTS + P V G+AAL+ SL P A+R
Sbjct: 138 ILAPGENILGAQP--GGETVR----LSGTSFATPVVTGVAALLLSLQLQQGETPDPQAVR 191
Query: 547 SALVTTA 553
+AL+ +A
Sbjct: 192 TALLNSA 198
>gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family.
Members of the peptidases S53 (sedolisin) family include
endopeptidases and exopeptidases sedolisin, kumamolysin,
and (PSCP) Pepstatin-insensitive Carboxyl Proteinase.
The S53 family contains a catalytic triad Glu/Asp/Ser
with an additional acidic residue Asp in the oxyanion
hole, similar to that of Asn in subtilisin. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values. Characterized sedolisins
include Kumamolisin, an extracellular calcium-dependent
thermostable endopeptidase from Bacillus. The enzyme is
synthesized with a 188 amino acid N-terminal preprotein
region which is cleaved after the extraction into the
extracellular space with low pH. One kumamolysin
paralog, kumamolisin-As, is believed to be a
collagenase. TPP1 is a serine protease that functions as
a tripeptidyl exopeptidase as well as an endopeptidase.
Less is known about PSCP from Pseudomonas which is
thought to be an aspartic proteinase.
Length = 361
Score = 45.4 bits (108), Expect = 9e-05
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 24/117 (20%)
Query: 224 APLAHLAIYKACWDIGCTDADVLKAFDKAIHD---GVDVLSVSIG---NEIPLFSYIDQR 277
AP A++ +Y A G L AF A+ D V+S+S G +P +Y +
Sbjct: 87 APGANITLYFAP---GTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPP-AYAQRV 142
Query: 278 DSIAIGSFHAIAKGITVVSSAGNDG--------PVAQTIVN---TAPWIITVGATTI 323
++ A A+GITV++++G+ G V+ ++P++ VG TT+
Sbjct: 143 CNLF---AQAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTL 196
>gnl|CDD|216938 pfam02225, PA, PA domain. The PA (Protease associated) domain is
found as an insert domain in diverse proteases. The PA
domain is also found in a plant vacuolar sorting
receptor and members of the RZF family. It has been
suggested that this domain forms a lid-like structure
that covers the active site in active proteases, and is
involved in protein recognition in vacuolar sorting
receptors.
Length = 96
Score = 41.7 bits (98), Expect = 1e-04
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 362 IAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTD 421
+ D A C L + GKI+L + A + +AG G+I T
Sbjct: 12 YVGNGDDAGGCCPEDLADSDVKGKIVLVRRGGCS--FVEKAENAQRAGAAGVIIYNNDTG 69
Query: 422 GLD------SCNLIPCIKVNYEVGTQI 442
GL S IP + ++YE G +
Sbjct: 70 GLGGTVGDPSDVTIPVVFISYEDGEAL 96
>gnl|CDD|173813 cd07488, Peptidases_S8_2, Peptidase S8 family domain,
uncharacterized subfamily 2. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 247
Score = 43.2 bits (102), Expect = 3e-04
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 488 KPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHR------DWS 541
K IVAPG + P G D +SGTS S P V GI AL+ + + +
Sbjct: 184 KVLIVAPGSNY---NLPDGKDDF-----VSGTSFSAPLVTGIIALLLEFYDRQYKKGNNN 235
Query: 542 PAAIRSALVTTA 553
A+R+ + ++
Sbjct: 236 LIALRALVSSSV 247
>gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain,
uncharacterized subfamily 10. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 298
Score = 42.5 bits (100), Expect = 8e-04
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 492 VAPG--VDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSAL 549
V PG +D A P G+ G+ + SGTS + P VAG+ AL+ + SP RS L
Sbjct: 219 VPPGSQLDRSCAAFPDGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLL 278
Query: 550 VTTAS 554
TA
Sbjct: 279 NKTAR 283
Score = 32.8 bits (75), Expect = 0.68
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 242 DADVLKAFDKAIHDGVDVLSVSIGNEI------PLFSYIDQRDSIAIGSFHAIAKGITVV 295
+ + AF KAI D++S S G ++ S + ++A A+A+GI VV
Sbjct: 90 LVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVV 149
Query: 296 SSAGNDG 302
SAGN G
Sbjct: 150 FSAGNGG 156
>gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain,
uncharacterized subfamily 8. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 222
Score = 41.6 bits (98), Expect = 9e-04
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALV 550
A GVDI++ P Y +SG S + PHV G+ AL+ S D ++ L
Sbjct: 165 FSADGVDIIAPAPHGR------YLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQ 218
Query: 551 TTAS 554
A
Sbjct: 219 RLAV 222
>gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease,
Peptidase S8 family domain in Thiazoline
oxidase/subtilisin-like proteases. Thiazoline
oxidase/subtilisin-like protease is produced by the
symbiotic bacteria Prochloron spp. that inhabit didemnid
family ascidians. The cyclic peptides of the
patellamide class found in didemnid extracts are now
known to be synthesized by the Prochloron spp. The
prepatellamide is heterocyclized to form thiazole and
oxazoline rings and the peptide is cleaved to form the
two cyclic patellamides A and C. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Length = 267
Score = 41.5 bits (98), Expect = 0.001
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 491 IVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLH----RDWSPAAIR 546
I+APG +IL A SGTS + VAGIAAL+ SL P A+R
Sbjct: 189 ILAPGENILGAALG------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVR 242
Query: 547 SALVTTA 553
AL+ TA
Sbjct: 243 RALLETA 249
>gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family
domain in Subtilisin-like proteins. This family is a
member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 291
Score = 40.0 bits (94), Expect = 0.004
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 474 FSSRGPNSMSPAVLKPDIVAPG------------VDILSAYPPIGSKDIQGYALLSGTSM 521
+S GP S P +KPD+VA G LS + S G+ + GTS
Sbjct: 201 TTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSF 258
Query: 522 SCPHVAGIAALIKSLHRDWSPAAIRSALVTTAS 554
+ P A +AA + + + SP IR+ L+ +A
Sbjct: 259 AAPLAARLAAGLFAELPELSPETIRALLIHSAE 291
>gnl|CDD|222395 pfam13810, DUF4185, Domain of unknown function (DUF4185).
Length = 313
Score = 33.0 bits (76), Expect = 0.70
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 280 IAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTA-ITLGNHQV 338
+ + +A GI + G+D A+ ++ I +T I PT I +G Q
Sbjct: 54 LLRSTDTDLADGIRFDGAVGDDPGRARELLYGHDKIPGGESTVI----PTDGIAIGGTQY 109
Query: 339 L-------WGQSIDIGKVSHGFTGLTYS 359
L WG + G+ + ++G+ S
Sbjct: 110 LHYMSVRGWG---NPGEWTTNYSGIAKS 134
>gnl|CDD|151698 pfam11256, DUF3055, Protein of unknown function (DUF3055). This
family of proteins with unknown function appear to be
restricted to Firmicutes.
Length = 81
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 595 YDITVEDYIQFLCFMGHN 612
YD T E ++F+ FMG N
Sbjct: 2 YDDTEETKVRFVGFMGEN 19
>gnl|CDD|219689 pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of
this family are glucose/sorbosone dehydrogenases that
possess a beta-propeller fold.
Length = 324
Score = 30.6 bits (70), Expect = 3.5
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 18/71 (25%)
Query: 332 TLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFS 391
L + +V++ Q I KVS G + RIAF PD G+L T
Sbjct: 92 ALEDVEVIFRQ---IPKVS---GGGHFGSRIAFGPD-------GTLYITTGDR-----GD 133
Query: 392 RPDTQDIQSAA 402
R + QD+ S
Sbjct: 134 RDNAQDLSSHL 144
>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in
concert with the fructose-specific phosphotransferase
system (PTS) which imports fructose as
fructose-1-phosphate. The action of
1-phosphofructokinase results in
beta-D-fructose-1,6-bisphosphate and is an entry point
into glycolysis (GenProp0688).
Length = 304
Score = 30.6 bits (70), Expect = 3.9
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 241 TDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAG 299
T ++++A + + G + + +S+G + L + G+ A VVS+ G
Sbjct: 197 TLEEIIEAARELLDLGAENVLISLGADGALL--VT-----KEGALFAQPPKGEVVSTVG 248
>gnl|CDD|173792 cd04843, Peptidases_S8_11, Peptidase S8 family domain,
uncharacterized subfamily 11. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 277
Score = 30.4 bits (69), Expect = 4.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 517 SGTSMSCPHVAGIAALIKS-----LHRDWSPAAIRSALVTTAS 554
SGTS + P VAG AA I+ +P +R L T +
Sbjct: 235 SGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family.
This family consists largely of 1-phosphofructokinases,
but also includes tagatose-6-kinases and
6-phosphofructokinases.
Length = 303
Score = 30.2 bits (69), Expect = 5.2
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 241 TDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAG 299
T+ ++++A + + G + + VS+G + L + G+ A + VV++ G
Sbjct: 197 TEEEIIEAARELLDRGAENVLVSLGADGALL--VT-----KEGALKATPPKVEVVNTVG 248
>gnl|CDD|147993 pfam06126, Herpes_LAMP2, Herpesvirus Latent membrane protein 2.
Family of Kaposi's sarcoma-associated herpesvirus (HHV8)
latent membrane protein.
Length = 510
Score = 30.0 bits (67), Expect = 6.2
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 498 ILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPA 543
IL A P K A + +SC H+ G + +LH+ W+
Sbjct: 193 ILKATPAFCCKSHSCLATAAAGCISCIHI-GFTGIFITLHKHWAGP 237
>gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like,
Peptidase S8 family domain in Protein convertases.
Protein convertases, whose members include furins and
kexins, are members of the peptidase S8 or Subtilase
clan of proteases. They have an Asp/His/Ser catalytic
triad that is not homologous to trypsin. Kexins are
involved in the activation of peptide hormones, growth
factors, and viral proteins. Furin cleaves cell surface
vasoactive peptides and proteins involved in
cardiovascular tissue remodeling in the TGN, at cell
surface, or in endosomes but rarely in the ER. Furin
also plays a key role in blood pressure regulation
though the activation of transforming growth factor
(TGF)-beta. High specificity is seen for cleavage after
dibasic (Lys-Arg or Arg-Arg) or multiple basic residues
in protein convertases. There is also strong sequence
conservation.
Length = 297
Score = 29.8 bits (68), Expect = 6.2
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG----YALLSGTSMSCPH 525
AS+S G + + AP + I + D+ G + +GTS + P
Sbjct: 217 VRASYSEVGSSVL--------ASAPSGGSGNPEASIVTTDLGGNCNCTSSHNGTSAAAPL 268
Query: 526 VAGIAALI 533
AG+ AL+
Sbjct: 269 AAGVIALM 276
>gnl|CDD|129562 TIGR00470, sepS, O-phosphoserine--tRNA ligase. This family of
archaeal proteins resembles known phenylalanyl-tRNA
synthetase alpha chains. Recently, it was shown to act
in a proposed pathway of tRNA(Cys) indirect
aminoacylation, resulting in Cys biosynthesis from
O-phosphoserine, in certain archaea. It charges
tRNA(Cys) with O-phosphoserine. The pscS gene product
converts the phosphoserine to Cys [Amino acid
biosynthesis, Serine family, Protein synthesis, tRNA
aminoacylation].
Length = 533
Score = 30.2 bits (68), Expect = 6.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 907 QLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDIDPPVLETKKKEL 954
++R L D+N E A+R I G N ID+ P+ T K E+
Sbjct: 487 KVRVPIVRSLSDINLKIDELALRYIMGK--NKVIDVRGPLFLTAKVEI 532
>gnl|CDD|173853 cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of
an ABC-type nickel/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This
family represents the periplasmic substrate-binding
domain of nickel/dipeptide/oligopeptide transport
systems, which function in the import of nickel and
peptides, and other closely related proteins. The
oligopeptide-binding protein OppA is a periplasmic
component of an ATP-binding cassette (ABC) transport
system OppABCDEF consisting of five subunits: two
homologous integral membrane proteins OppB and OppF that
form the translocation pore; two homologous
nucleotide-binding domains OppD and OppF that drive the
transport process through binding and hydrolysis of ATP;
and the substrate-binding protein or receptor OppA that
determines the substrate specificity of the transport
system. The dipeptide (DppA) and oligopeptide (OppA)
binding proteins differ in several ways. The DppA binds
dipeptides and some tripeptides and is involved in
chemotaxis toward dipeptides, whereas the OppA binds
peptides of a wide range of lengths (2-35 amino acid
residues) and plays a role in recycling of cell wall
peptides, which precludes any involvement in chemotaxis.
Similar to the ABC-type dipeptide and oligopeptide
import systems, nickel transporter is comprised of five
subunits NikABCDE: the two pore-forming integral inner
membrane proteins NikB and NikC; the two inner
membrane-associated proteins with ATPase activity NikD
and NikE; and the periplasmic nickel binding NikA, which
is the initial nickel receptor that controls the
chemotactic response away from nickel. Most of other
periplasmic binding proteins are comprised of only two
globular subdomains corresponding to domains I and III
of the dipeptide/oligopeptide binding proteins. The
structural topology of these domains is most similar to
that of the type 2 periplasmic binding proteins (PBP2),
which are responsible for the uptake of a variety of
substrates such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the ligand
binding domains of ionotropic glutamate receptors,
LysR-type transcriptional regulators, and unorthodox
sensor proteins involved in signal transduction.
Length = 466
Score = 30.0 bits (68), Expect = 7.6
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 843 KDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLL---------KAAGVEKGSK 893
+ +A KA + VE+ DD + T LK P A L L A EK K
Sbjct: 91 PKNASPSAGKADEIEGVEVV--DDYTVTITLKEPDAPFLALLAYPAASPVPKAAAEKDGK 148
Query: 894 DPKQQKVG 901
+ VG
Sbjct: 149 AFGTKPVG 156
>gnl|CDD|234755 PRK00419, PRK00419, DNA primase small subunit; Reviewed.
Length = 376
Score = 29.6 bits (67), Expect = 8.4
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 698 FRVTFFSNH----KVHPVPDAEYR-FGSLTWTDDSVDS--RFNGFLSI 738
+ + F ++ ++ PD E R FG + + + D+ R F +
Sbjct: 8 YLKSRFRDYYRRAELPLPPDLEKREFGFIPFGEGPSDTMVRHLSFSDL 55
>gnl|CDD|182544 PRK10555, PRK10555, aminoglycoside/multidrug efflux system;
Provisional.
Length = 1037
Score = 29.8 bits (67), Expect = 9.6
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 26/131 (19%)
Query: 293 TVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHG 352
V +A G AQT+ NT +I T +D N + QS G+ S
Sbjct: 42 NVRITANYPGASAQTLENTVTQVIEQNMTGLD----------NLMYMSSQSSGTGQAS-- 89
Query: 353 FTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVG 412
+T S + DPD A Q L + + R Q +Q+ ++V + G
Sbjct: 90 ---VTLSFKAGTDPDEAVQQVQNQLQSAM----------RKLPQAVQNQGVTVRKTGDTN 136
Query: 413 LIYAQF-HTDG 422
++ F TDG
Sbjct: 137 ILTIAFVSTDG 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0820 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 47,982,677
Number of extensions: 4734959
Number of successful extensions: 4224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4137
Number of HSP's successfully gapped: 110
Length of query: 954
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 848
Effective length of database: 6,236,078
Effective search space: 5288194144
Effective search space used: 5288194144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.3 bits)