RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 042478
(954 letters)
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 592 bits (1527), Expect = 0.0
Identities = 219/655 (33%), Positives = 337/655 (51%), Gaps = 65/655 (9%)
Query: 114 TTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWK 173
TT + +F+ L S L S +G+ I+ ++D+G+WPES SF D GM +P WK
Sbjct: 1 TTHTSDFLKL---NPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMP--EIPKRWK 55
Query: 174 GICQKGEKFNSSNCNRKLIGARWFIKGIMDMIN-------------------AST----- 209
GIC+ G +FN+S CNRKLIGA +F KGI+ AS
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNF 115
Query: 210 ---NTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSI-G 265
+ G A G ARG AP A LA+YK ++ G +D++ A D+A+ DGVD++S+S
Sbjct: 116 AKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGY 175
Query: 266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDR 325
IPL+ D+I+I SF A+ KG+ V +SAGN GP ++ N +PWI+ V + DR
Sbjct: 176 RFIPLYE-----DAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDR 230
Query: 326 AFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGK 385
F +TLGN + G S+ + + + Y++ + S +
Sbjct: 231 TFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTL-----SDCSSEELLSQVENPENT 285
Query: 386 IILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNL-IPCIKVNYEVGTQILS 444
I++C D D +T+A I+ S P + VN + G Q+++
Sbjct: 286 IVICD---DNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVIN 342
Query: 445 YIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP 504
Y++ + +P A ++ ET + +P VA+ S+RGP+ + KPDI+APGV IL+AYPP
Sbjct: 343 YVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPP 402
Query: 505 IGS--------KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQT 556
Y L SGTSM+ PH AGIAA++K+ H +WSP+AIRSA++TTA
Sbjct: 403 NVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPL 462
Query: 557 GTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASI 616
I ++ K A P D+G GHV+PN+A++PGLVYD T +DY+ LC + +
Sbjct: 463 DNTRKPI-KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQF 521
Query: 617 SRLTKSKINCLKNNHLALDLNLPS-ITIPNLHNNETV---TVTRKVTNVGQINSAYEALV 672
+ +S + ++ + DLN PS I + ++ N T+ R VTNVG+ + Y+A +
Sbjct: 522 KTIARSSASH-NCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKL 580
Query: 673 EAPYGVNMTVEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTDDS 727
+AP ++V P+++ F + S+ +T GS+TW + +
Sbjct: 581 KAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGD----EGQSRNVGSITWVEQN 631
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET:
DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Length = 621
Score = 589 bits (1519), Expect = 0.0
Identities = 230/644 (35%), Positives = 321/644 (49%), Gaps = 70/644 (10%)
Query: 114 TTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWK 173
TTRSW+F+G + S + ++G++DTG+WPES SF D+G P PP WK
Sbjct: 1 TTRSWDFLGF-----PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFS--PPPPKWK 53
Query: 174 GICQKGEKFNSSNCNRKLIGARWFIKGIMDMIN---------------AST--------N 210
G C+ F CNRK+IGAR + G AST
Sbjct: 54 GTCETSNNFR---CNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQA 110
Query: 211 TDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPL 270
GL G ARGG PLA +A YK CW+ GC+D D+L A+D AI DGVD++S+S+G P
Sbjct: 111 NLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPR 170
Query: 271 FSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTA 330
+ D+IAIGSFHA+ +GI +SAGN GP T + +PW+++V A+T+DR F T
Sbjct: 171 HYF---VDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQ 227
Query: 331 ITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIA---FDPDSANDCRQGSLNATLAAGKII 387
+ +GN Q G SI+ + + L I FD ++ C S+N L GKI+
Sbjct: 228 VQIGNGQSFQGVSINTFD--NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIV 285
Query: 388 LCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYIR 447
+C + + G + +T +P ++ L YI
Sbjct: 286 VCEASFGPHEF------FKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIY 339
Query: 448 RARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGS 507
RSP A + T I + +P V SFSSRGPN + V+KPDI PGV+IL+A+P +
Sbjct: 340 SIRSPGATI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAP 398
Query: 508 ----KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNI 563
+ + ++SGTSMSCPH+ GIA +K+ + WSPAAI+SAL+TTAS
Sbjct: 399 VGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPM------- 451
Query: 564 FEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSK 623
+ F G GHVNP KA+ PGLVYD DY++FLC G+N ++ R+T
Sbjct: 452 ---NARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDY 508
Query: 624 INCLKNN-HLALDLNLPSITIPNLHN-NETVTVTRKVTNVGQINSAYEALVEAPYGVNMT 681
C N DLN PS + + R +T+V S Y A++ AP G+ ++
Sbjct: 509 SACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTIS 568
Query: 682 VEPEVISFNMTIKILSFRVTFFSNHKVHPVPDAEYRFGSLTWTD 725
V P V+SFN SF +T + SL W+D
Sbjct: 569 VNPNVLSFNGLGDRKSFTLTVRGS------IKGFVVSASLVWSD 606
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 436 bits (1121), Expect = e-138
Identities = 111/609 (18%), Positives = 197/609 (32%), Gaps = 55/609 (9%)
Query: 124 HYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFN 183
+ K L ++ G GT++ +ID G E++ K +K +K +
Sbjct: 1 NDPSQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKT--KARYQSKEDLEKAKKEH 58
Query: 184 SSN----CNRKLIGARWFIKGIMDMIN-------AST----NTDEGLAAGLARGGAPLAH 228
N K+ + K ++ + E G P A
Sbjct: 59 GITYGEWVNDKVAYYHDYSKDGKTAVDQEHGTHVSGILSGNAPSETKEPYRLEGAMPEAQ 118
Query: 229 LAIYKACWDIGCT--DADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFH 286
L + + G + +A AI+ G V+++S GN +Y + D +
Sbjct: 119 LLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGN--AALAYANLPDETKKAFDY 176
Query: 287 AIAKGITVVSSAGNDGPVAQTI---VNTAPWIITVGA-TTIDRAFPTAITLGNHQVLWGQ 342
A +KG+++V+SAGND + P VG D A + Q+
Sbjct: 177 AKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETV 236
Query: 343 SIDIGKVSHGFTGLTYSERIA---FDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQ 399
+ + + R + + + GKI L D +
Sbjct: 237 RVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALI--ERGDIDFK 294
Query: 400 SAAISVTQAGGVGLIYAQFHTDGLD----SCNLIPCIKVNYEVGTQILSYIRRARSPIAK 455
+AG VG++ G + + +P ++ + G +
Sbjct: 295 DKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNP----QKTIT 350
Query: 456 LSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYAL 515
++ V+ +++ FSS G + +KPDI APG DILS+ YA
Sbjct: 351 FNATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN------NKYAK 402
Query: 516 LSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADP 575
LSGTSMS P VAGI L++ + P S + A + + + P
Sbjct: 403 LSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSP 462
Query: 576 FDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALD 635
G G V+ KA + +T +D + + K +
Sbjct: 463 RQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEVTVNVHNKSDK----PQE 516
Query: 636 LNLPSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKI 695
L + + + + + KV S + + A +TV + F+ +
Sbjct: 517 LYYQATVQTDKVDGKHFALAPKVLYE---TSWQKITIPANSSKQVTVPIDASRFSKDLLA 573
Query: 696 LSFRVTFFS 704
F
Sbjct: 574 QMKNGYFLE 582
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 224
Score = 195 bits (495), Expect = 5e-57
Identities = 153/203 (75%), Positives = 176/203 (86%), Gaps = 5/203 (2%)
Query: 751 SCSLFPSAVNLSSNSNVSLPFYDNKVKPSPLLSSTPRFLTVIAMAPPKPGGKAKAKKVLG 810
S L PS+++LSSN SL F ++K+ SP S++ R L+++AMAP KAKKV+G
Sbjct: 24 SSLLTPSSLSLSSNPRNSLQFLNSKLFLSPP-STSHRRLSIVAMAPKP----GKAKKVIG 78
Query: 811 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFT 870
+IKLALEAGKATPAPPVGPALG+KGVNIMAFCKDYNARTADK G+VIPVEITV+DD+SFT
Sbjct: 79 VIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFT 138
Query: 871 FILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRI 930
FILKTPPASVLLLKA+G EKGSKDP+ +KVGKITI+QLR IATEKLPDLNCT+IESAMRI
Sbjct: 139 FILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRI 198
Query: 931 IAGTAANMGIDIDPPVLETKKKE 953
IAGTAANMGIDIDPP+L KKKE
Sbjct: 199 IAGTAANMGIDIDPPILVKKKKE 221
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I*
1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I*
1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I*
1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Length = 162
Score = 188 bits (478), Expect = 2e-55
Identities = 45/136 (33%), Positives = 79/136 (58%)
Query: 808 VLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDR 867
+ G I++ + G+A P PP+GP LG V++ A ++ N +TA G +PV + DD
Sbjct: 1 MAGTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFDGTEVPVTVKYDDDG 60
Query: 868 SFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESA 927
SF + PP + L+ AG E GS +P++ V ++++Q++ IA +K PDL + +A
Sbjct: 61 SFEIEVGVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNA 120
Query: 928 MRIIAGTAANMGIDID 943
+ + GT ++G+ I+
Sbjct: 121 AKEVVGTCTSLGVTIE 136
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase;
post-translational modification, multiple
methyltransferase; HET: SAH 4MM; 1.75A {Thermus
thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A
2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K
2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K
2xtg_K ...
Length = 146
Score = 168 bits (427), Expect = 1e-48
Identities = 81/138 (58%), Positives = 107/138 (77%)
Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYD 865
KKV+ ++KL L AG ATPAPPVGPALG G NIM F K +NA TA+ ++PVEIT+Y
Sbjct: 1 KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYA 60
Query: 866 DRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIE 925
DRSFTF+ KTPPAS L+ KAAG+EKG+ P ++KVG+IT EQ+ IA +K+PDLN T +E
Sbjct: 61 DRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLE 120
Query: 926 SAMRIIAGTAANMGIDID 943
+A R+IAG+A +MG+++
Sbjct: 121 AAARMIAGSARSMGVEVV 138
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA,
ribosome, translocation, thiostrep; 2.57A {Thermotoga
maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A*
1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K
2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A
487d_L 1pn8_L 1pn7_L
Length = 140
Score = 161 bits (409), Expect = 2e-46
Identities = 93/139 (66%), Positives = 113/139 (81%)
Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVY 864
AKKV IKL L AGKATPAPPVGPALG GVNIM FCK +NA TADKAG ++PV ITVY
Sbjct: 1 AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVY 60
Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSI 924
+D+SFTFI+KTPPAS LL KAAG+EKGS +PK++ VGK+T +Q+ IA K+PDLN S+
Sbjct: 61 EDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSL 120
Query: 925 ESAMRIIAGTAANMGIDID 943
E+AM+II GTA +MGI++
Sbjct: 121 EAAMKIIEGTAKSMGIEVV 139
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I*
2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I*
2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Length = 141
Score = 161 bits (407), Expect = 4e-46
Identities = 78/140 (55%), Positives = 98/140 (70%), Gaps = 1/140 (0%)
Query: 805 AKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITV 863
AKKV +KL + AG A P+PPVGPALG +GVNIM FCK +NA+T + G IPV ITV
Sbjct: 1 AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITV 60
Query: 864 YDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTS 923
Y DRSFTF+ KTPPA+VLL KAAG++ GS P + KVGKI+ QL+ IA K D+
Sbjct: 61 YADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGAD 120
Query: 924 IESAMRIIAGTAANMGIDID 943
IE+ R I GTA +MG+ ++
Sbjct: 121 IEAMTRSIEGTARSMGLVVE 140
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K
1s1i_K
Length = 165
Score = 141 bits (357), Expect = 5e-39
Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 5/148 (3%)
Query: 796 PPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGY 855
PPK ++ L G+ + P +G G++ D T D G
Sbjct: 2 PPKFDPNEI-----KVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGL 56
Query: 856 VIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEK 915
I V++T+ + ++ ++ + A ++ K + G IT +++ IA +
Sbjct: 57 RITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQM 116
Query: 916 LPDLNCTSIESAMRIIAGTAANMGIDID 943
+ ++ I GTA ++G ++D
Sbjct: 117 RHRSLARELSGTIKEILGTAQSVGCNVD 144
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Length = 145
Score = 140 bits (354), Expect = 5e-39
Identities = 54/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVY 864
+V G+I+ + AG A P PP+GP LG +GV+I FCK++N RT D K G +P +I V
Sbjct: 2 PEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVK 61
Query: 865 DDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPD----LN 920
DR+F + P S L AAG+EKG++ ++ G +T++ + IA K D L
Sbjct: 62 PDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQ 121
Query: 921 CTSIESAMRIIAGTAANMGIDID 943
+ S +R I G+A ++GI +
Sbjct: 122 DVPLSSVVRSIIGSARSLGIRVV 144
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_J
Length = 166
Score = 130 bits (329), Expect = 3e-35
Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 8/150 (5%)
Query: 796 PPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTA-DKAG 854
PPK + + + + G+ A + P +G G++ +D TA D G
Sbjct: 2 PPKL-----DPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKG 56
Query: 855 YVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQ-QKVGKITIEQLRAIAT 913
+ V++TV +R + A++++ E+ K K + G I+++ + IA
Sbjct: 57 LRVTVKLTV-QNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIAR 115
Query: 914 EKLPDLNCTSIESAMRIIAGTAANMGIDID 943
+ ++ I GT ++G +D
Sbjct: 116 IMRNRSMAKEMAGTVKEILGTCVSVGCTVD 145
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure,
RNA-protein; HET: GTP; 2.8A {Bacillus
stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A
1fow_A 1fox_A 1foy_A 2fow_A
Length = 76
Score = 108 bits (272), Expect = 9e-29
Identities = 44/75 (58%), Positives = 57/75 (76%)
Query: 869 FTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAM 928
FTFI KTPPA+VLL KAAG+E GS +P + KV I +++R IA K+PDLN SIE+AM
Sbjct: 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAM 60
Query: 929 RIIAGTAANMGIDID 943
R+I GTA +MGI ++
Sbjct: 61 RMIEGTARSMGIVVE 75
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase;
S-adenosyl-L-methionine dependent methyltransferase;
1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B*
2bcw_A
Length = 72
Score = 108 bits (270), Expect = 2e-28
Identities = 46/71 (64%), Positives = 55/71 (77%)
Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYD 865
KKV+ ++KL L AGKATPAPPVGPALG G NIM F K +NA TA+ ++PVEIT+Y
Sbjct: 2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYA 61
Query: 866 DRSFTFILKTP 876
DRSFTF+ KTP
Sbjct: 62 DRSFTFVTKTP 72
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 118 bits (296), Expect = 9e-28
Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP---IGSKDIQGYALLSGTSMSCPHV 526
+ FSSRGP + LKP++VAPG I++A +G Y GT+M+ PHV
Sbjct: 308 VITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHV 365
Query: 527 AGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPN 586
AGIAAL+ H W+P +++AL+ TA D G G VN
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIETADIVKPDE------------IADIAYGAGRVNAY 413
Query: 587 KAMNPGLVYDITVEDY 602
KA +T Y
Sbjct: 414 KAAYYDNYAKLTFTGY 429
Score = 77.6 bits (191), Expect = 7e-15
Identities = 61/311 (19%), Positives = 101/311 (32%), Gaps = 70/311 (22%)
Query: 45 EDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIA-------- 96
E I + + + I Y+Y A ++ IA
Sbjct: 35 EVSTIIMFDNQADKEKAVEILDFLGAKIKYNYHI-IPALAVKIKVKDLLIIAGLMDTGYF 93
Query: 97 ---ELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWP 153
+L GV + + ++K+ ++ N+ G G IGIIDTG+
Sbjct: 94 GNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMAT-NMWNLGYDGSGITIGIIDTGIDA 152
Query: 154 ESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMD---------- 203
K +IG F+ G
Sbjct: 153 SHPDLQGK-----------------------------VIGWVDFVNGKTTPYDDNGHGTH 183
Query: 204 ---MINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAI----HD 255
+ + G G+A P A L K G + +D++ D A+
Sbjct: 184 VASIAAGTGAASNGKYKGMA----PGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKY 239
Query: 256 GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN--TAP 313
G+ V+++S+G+ D DS++ +A G+ VV +AGN GP T+ + A
Sbjct: 240 GIKVINLSLGSS----QSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAAS 295
Query: 314 WIITVGATTID 324
+ITVGA
Sbjct: 296 KVITVGAVDKY 306
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Bacillus licheniformis}
SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A
1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A
2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Length = 274
Score = 113 bits (284), Expect = 9e-28
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 30/119 (25%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
ASFSS G + +++APG + S YP + YA L+GTSM+ PHVAG
Sbjct: 184 NRASFSSVGA--------ELEVMAPGAGVYSTYP--TN----TYATLNGTSMASPHVAGA 229
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
AALI S H + S + +R+ L +TA+ G+ G G +N A
Sbjct: 230 AALILSKHPNLSASQVRNRLSSTATYLGSSF----------------YYGKGLINVEAA 272
Score = 56.0 bits (136), Expect = 1e-08
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVSIG 265
A+ + G+ G AP L K G + + ++ + A +G+DV+++S+G
Sbjct: 72 AALDNTTGVL-----GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLG 126
Query: 266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT----APWIITVGAT 321
+ + Q A+ +A A+G+ VV++AGN G T +I VGA
Sbjct: 127 GASGS-TAMKQ----AVD--NAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAV 179
Query: 322 TIDRA 326
+
Sbjct: 180 DSNSN 184
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A
{Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E*
1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E*
1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E*
1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Length = 281
Score = 112 bits (283), Expect = 1e-27
Identities = 42/119 (35%), Positives = 56/119 (47%), Gaps = 30/119 (25%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+ ASFSS GP + D++APGV I S P G+ Y +GTSM+ PHVAG
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLP--GN----KYGAYNGTSMASPHVAGA 230
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
AALI S H +W+ +RS+L T ++ G G G +N A
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKLGDSF----------------YYGKGLINVQAA 273
Score = 55.6 bits (135), Expect = 2e-08
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVSIG 265
A+ N G+ G AP A L K G + ++ + AI + +DV+++S+G
Sbjct: 73 AALNNSIGVL-----GVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLG 127
Query: 266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT----APWIITVGAT 321
+ A+ A+A G+ VV++AGN+G + P +I VGA
Sbjct: 128 GPSGSAALKA-----AVD--KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAV 180
Query: 322 TIDRA 326
Sbjct: 181 DSSNQ 185
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 112 bits (283), Expect = 2e-27
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 468 SPRVASFSSRGP----NSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSC 523
+ RVA +SSRG +I APG + S + GY +SGTSM+
Sbjct: 200 TYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN------GGYNTISGTSMAT 253
Query: 524 PHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDG 560
PHV+G+AA I + + S +RS L A G
Sbjct: 254 PHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290
Score = 52.3 bits (126), Expect = 3e-07
Identities = 44/215 (20%), Positives = 65/215 (30%), Gaps = 61/215 (28%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G G I ++DTGV + + + F
Sbjct: 25 GSGINIAVLDTGVNTSHPDLVNN-----------------------------VEQCKDFT 55
Query: 199 KGIMDMINASTNTDE--------GLAAGLA-------RGGAPLAHLAIYKACWDIG-CTD 242
++ TD G A G AP A L YK D G
Sbjct: 56 GA--TTPINNSCTDRNGHGTHVAGTALADGGSDQAGIYGVAPDADLWAYKVLLDSGSGYS 113
Query: 243 ADVLKAFD-----KAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSS 297
D+ A ++S+S+G+ S + S A+ A +KG+ +V++
Sbjct: 114 DDIAAAIRHAADQATATGTKTIISMSLGS-----SANNSLISSAVNY--AYSKGVLIVAA 166
Query: 298 AGNDGPVAQTIVN--TAPWIITVGATTIDRAFPTA 330
AGN G TI P I V A + T
Sbjct: 167 AGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTY 201
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus}
SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A
1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A
1q5p_A* 1st3_A 1c9n_A*
Length = 269
Score = 111 bits (279), Expect = 3e-27
Identities = 46/119 (38%), Positives = 55/119 (46%), Gaps = 30/119 (25%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
ASFS G DIVAPGV++ S YP GS YA L+GTSM+ PHVAG
Sbjct: 179 NRASFSQYGA--------GLDIVAPGVNVQSTYP--GS----TYASLNGTSMATPHVAGA 224
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
AAL+K + WS IR+ L TA+ G+ G G VN A
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTN----------------LYGSGLVNAEAA 267
Score = 55.2 bits (134), Expect = 3e-08
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVSIG 265
A+ N G+ G AP A L K G + + + + + A ++G+ V ++S+G
Sbjct: 71 AALNNSIGVL-----GVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLG 125
Query: 266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDR 325
+ P S ++ A+ A ++G+ VV+++GN G + + + VGAT +
Sbjct: 126 S--PSPSATLEQ---AVN--SATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNN 178
Query: 326 A 326
Sbjct: 179 N 179
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 118 bits (296), Expect = 4e-27
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 24/140 (17%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
V +++SR P + APG I S S L++GTSM+ PHVAG
Sbjct: 418 NVYTWTSRDPCIDG--GQGVTVCAPGGAIASVPQFTMS----KSQLMNGTSMAAPHVAGA 471
Query: 530 AALIKSL----HRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNP 585
AL+ S + ++SP +I+ A+ TA++ G DPF G G +N
Sbjct: 472 VALLISGLKQQNIEYSPYSIKRAISVTATKLG--------------YVDPFAQGHGLLNV 517
Query: 586 NKAMNPGLVYDITVEDYIQF 605
KA + + ++ ++F
Sbjct: 518 EKAFEHLTEHRQSKDNMLRF 537
Score = 68.3 bits (166), Expect = 1e-11
Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 20/128 (15%)
Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC---TDADVLKAFDKAI-----HDGVD 258
+ ++ + G AP A + T +++A K + +D
Sbjct: 281 SGNHSSRDVD-----GVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRID 335
Query: 259 VLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN----TAPW 314
V+++S G R + G+ V+SAGN GP T+ + P
Sbjct: 336 VINMSYG--EHANWSNSGRIGELMNEV-VNKYGVVWVASAGNHGPALCTVGTPPDISQPS 392
Query: 315 IITVGATT 322
+I VGA
Sbjct: 393 LIGVGAYV 400
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E
RNA-protein interaction, minor groove binding,
antibiotic binding; 2.80A {Geobacillus
stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Length = 67
Score = 100 bits (252), Expect = 4e-26
Identities = 40/67 (59%), Positives = 51/67 (76%)
Query: 874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAG 933
KTPPA+VLL KAAG+E GS +P + KV I +++R IA K+PDLN SIE+AMR+I G
Sbjct: 1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEG 60
Query: 934 TAANMGI 940
TA +MGI
Sbjct: 61 TARSMGI 67
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 106 bits (267), Expect = 5e-25
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 25/125 (20%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
FS+ G N+ K I+APG +IL A P ++ L+GTSM+ P + GI
Sbjct: 252 TPCHFSNWGGNN-----TKEGILAPGEEILGAQP--CTE---EPVRLTGTSMAAPVMTGI 301
Query: 530 AALIKSLH----RDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNP 585
+AL+ SL + A+R+AL+ TA + + +P G VN
Sbjct: 302 SALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVE-----------EPERCLRGFVNI 350
Query: 586 NKAMN 590
AM
Sbjct: 351 PGAMK 355
Score = 53.3 bits (128), Expect = 2e-07
Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 29/209 (13%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG----A 194
I IID F +G + V P+W + + +
Sbjct: 48 DPQITIVIIDGDPDYTLSCF--EGAEVSKVFPYWHEP-AEPITPEDYAAFQSIRDQGLKG 104
Query: 195 RWFIKGIMDMINASTNTDE---------GLAAGLARGG----APLAHLAIYKACWDIG-- 239
+ + + +I + + G AP + I
Sbjct: 105 KEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQEHSPVFGIAPNCRVINMPQDAVIRGN 164
Query: 240 ----CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVV 295
+ ++ +A D A+ G +++ + S ++ AI + +V
Sbjct: 165 YDDVMSPLNLARAIDLALELGANIIHCAFCRPTQ-TSEGEEILVQAIKK--CQDNNVLIV 221
Query: 296 SSAGNDGPVAQTIVNTAPWIITVGATTID 324
S GN+ + + P + VGA +D
Sbjct: 222 SPTGNNSNESWCLPAVLPGTLAVGAAKVD 250
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 109 bits (274), Expect = 8e-25
Identities = 40/146 (27%), Positives = 53/146 (36%), Gaps = 33/146 (22%)
Query: 468 SPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ------------GYAL 515
+ RVA FSSR + APGV ILS P S + Y
Sbjct: 325 TFRVAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDY 376
Query: 516 LSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADP 575
GTSM+ PHV G+ A++ + P IR L TA +G +
Sbjct: 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDHD----------- 425
Query: 576 FDIGGGHVNPNKAMNPGLVYDITVED 601
G G V + A+ L VE+
Sbjct: 426 --TGYGLVKLDAALQGPLPTQGGVEE 449
Score = 50.5 bits (120), Expect = 2e-06
Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 20/126 (15%)
Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-------TDADVLKAFDKAIHDGVDV 259
A+ +G+ G AP A + D D V A G V
Sbjct: 209 AAKKDGKGIV-----GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKV 263
Query: 260 LSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTA-PWIITV 318
++ S G +SY + A +A+ G+ +V SAGN+ + P +I V
Sbjct: 264 MNHSWGG--WGYSYTMKE---AFD--YAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQV 316
Query: 319 GATTID 324
A
Sbjct: 317 AALDYY 322
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 104 bits (261), Expect = 3e-24
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 27/138 (19%)
Query: 453 IAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG 512
+A L+ ++ + S G N DI APG +I P +
Sbjct: 218 VAALAQYRKGETPVLHGGGITGSRFGNNW-------VDIAAPGQNITFLRP--DA----K 264
Query: 513 YALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKE 572
SGTS + V+G+ A + S + + ++ L+ +A + + +
Sbjct: 265 TGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKVT-------- 316
Query: 573 ADPFDIGGGHVNPNKAMN 590
G +N KA++
Sbjct: 317 ------EGRVLNAEKAIS 328
Score = 46.6 bits (111), Expect = 3e-05
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 25/135 (18%)
Query: 222 GGAPLAHLAIYKACWDIG----CTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQR 277
G P A ++ + D + + + ++++S G + + +
Sbjct: 105 GVYPHALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTE 164
Query: 278 DSIAIGSFHAIAKGITVVSSAGNDG-----------------PVAQTIVNTAPWIITVGA 320
+V++ GNDG ++ +I V A
Sbjct: 165 LLSR----MGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAA 220
Query: 321 TTIDRAFPTAITLGN 335
R T + G
Sbjct: 221 LAQYRKGETPVLHGG 235
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
beta barrel domain hydrolase; HET: PMS; 1.40A
{Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Length = 441
Score = 105 bits (263), Expect = 5e-24
Identities = 74/480 (15%), Positives = 142/480 (29%), Gaps = 102/480 (21%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG----- 193
I IID+G + + G + N N
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNANNVT-------GTNNSGTGNWYQPGNNN----AHGTHV 69
Query: 194 ARWFIKGIMDMINASTNTDEGLAAGLARGGAPL--AHLAIYKACWDIGC-TDADVLKAFD 250
A G I A N +EG+ G P A++ I K + G + ++ A D
Sbjct: 70 A-----GT---IAAIAN-NEGVV-----GVMPNQNANIHIVKVFNEAGWGYSSSLVAAID 115
Query: 251 KAI-HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV 309
+ G +V+++S+G + ++ A+ + G+ ++++AGN G + +
Sbjct: 116 TCVNSGGANVVTMSLGG--SGSTTTERN---ALNT--HYNNGVLLIAAAGNAGDSSYSYP 168
Query: 310 NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIG-----------KVSHGFTGLTY 358
+ +++V A + + ++I +T
Sbjct: 169 ASYDSVMSVAAVDSNLDHAA---FSQ----YTDQVEISGPGEAILSTVTVGEGRLADITI 221
Query: 359 SERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQF 418
+ F R + A I + + + + +
Sbjct: 222 GGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVER 281
Query: 419 HTDGLDSCNLIPCIK-VNYEVGTQILSY-------IRRARSPIAKLSSPETVIGDLVSPR 470
+ S I K I+ Y ++ A + +
Sbjct: 282 VGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATG 341
Query: 471 VASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIA 530
+A + G ++ + G Y +GTSM+ PHV+G+A
Sbjct: 342 LALKAKLGQST--------TVSNQGNQ--------------DYEYYNGTSMATPHVSGVA 379
Query: 531 ALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590
L+ S H + S + +R+AL TA G + G G +N A
Sbjct: 380 TLVWSYHPECSASQVRAALNATADDLSVAGRDNQ-------------TGYGMINAVAAKA 426
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Length = 280
Score = 101 bits (255), Expect = 5e-24
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 31/121 (25%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
R+ASFS+ G D+VAPGVDI+S YA +SGTSM+ PHVAG+
Sbjct: 190 RLASFSNYGT--------WVDVVAPGVDIVSTITG------NRYAYMSGTSMASPHVAGL 235
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
AAL+ S + + IR A+ TA + G G +N A+
Sbjct: 236 AALLAS--QGRNNIEIRQAIEQTADKISGTG---------------TYFKYGRINSYNAV 278
Query: 590 N 590
Sbjct: 279 T 279
Score = 55.3 bits (134), Expect = 3e-08
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 205 INASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVDVLSVS 263
A TN G+A G AP + +A G T +D+ A A G +V+++S
Sbjct: 80 AAAETNNATGIA-----GMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLS 134
Query: 264 IGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTI 323
+G + + A+ +A KG VV++AGN+G + +I VGA
Sbjct: 135 LGC--DCHTTTLEN---AVN--YAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ 187
Query: 324 DRA 326
Sbjct: 188 YDR 190
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 102 bits (257), Expect = 8e-24
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
R++ F++ + DIVAPGV I S Y GYA LSGT+M+ PHVAG
Sbjct: 214 RLSDFTNTNE--------EIDIVAPGVGIKSTYLD------SGYAELSGTAMAAPHVAGA 259
Query: 530 AALIKSLHRD-----WSPAAIRSALVTTASQTGTDG 560
ALI +L D S I + LV A+ G
Sbjct: 260 LALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTA 295
Score = 50.8 bits (122), Expect = 1e-06
Identities = 43/213 (20%), Positives = 70/213 (32%), Gaps = 63/213 (29%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G G IIG+IDTG + +++ +IG
Sbjct: 40 GAGQIIGVIDTGCQVDHPDLAER-----------------------------IIGGVNLT 70
Query: 199 KGIMDMINASTNTDE--------GLAAGLARGG-----APLAHLAIYKACWDIGC-TDAD 244
+ + +D G A G AP A L I KA G
Sbjct: 71 TDYGG--DETNFSDNNGHGTHVAGTVAAAETGSGVVGVAPKADLFIIKALSGDGSGEMGW 128
Query: 245 VLKAFDKAI------HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
+ KA A+ + + ++++S+G P S A+ A++ ++VV +A
Sbjct: 129 IAKAIRYAVDWRGPKGEQMRIITMSLGG--PTDSEELHD---AVKY--AVSNNVSVVCAA 181
Query: 299 GNDGPVAQTIVNT-----APWIITVGATTIDRA 326
GN+G + +I VGA D
Sbjct: 182 GNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLR 214
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 101 bits (253), Expect = 1e-23
Identities = 41/121 (33%), Positives = 53/121 (43%), Gaps = 31/121 (25%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+SFS+ G D+ APG I S YP S YA LSGTSM+ PHVAG+
Sbjct: 189 NKSSFSTYGSW--------VDVAAPGSSIYSTYP--TS----TYASLSGTSMATPHVAGV 234
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
A L+ S + S + IR+A+ TA + G G VN KA+
Sbjct: 235 AGLLAS--QGRSASNIRAAIENTADKISGTG---------------TYWAKGRVNAYKAV 277
Query: 590 N 590
Sbjct: 278 Q 278
Score = 56.8 bits (138), Expect = 9e-09
Identities = 49/194 (25%), Positives = 67/194 (34%), Gaps = 39/194 (20%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG----- 193
G G I I+DTGV + K G N N G
Sbjct: 29 GSGAKIAIVDTGVQSNHPDLAGKV---------VGGWDFVDNDSTPQNGN----GHGTHC 75
Query: 194 ARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKA 252
A GI A TN G+A G AP A + + + G T V A
Sbjct: 76 A-----GI---AAAVTNNSTGIA-----GTAPKASILAVRVLDNSGSGTWTAVANGITYA 122
Query: 253 IHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTA 312
G V+S+S+G + + Q+ A+ +A KG VV++AGN G A
Sbjct: 123 ADQGAKVISLSLGG--TVGNSGLQQ---AVN--YAWNKGSVVVAAAGNAGNTAPNYPAYY 175
Query: 313 PWIITVGATTIDRA 326
I V +T +
Sbjct: 176 SNAIAVASTDQNDN 189
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 97.8 bits (244), Expect = 3e-22
Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 42/134 (31%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+ASFS+R P ++ APGVDILS YP Y L GT+M+ PHV+G+
Sbjct: 212 NIASFSNRQP----------EVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGV 255
Query: 530 AALIKSLHR-------------DWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPF 576
ALI++ + D S +R L TA G G +
Sbjct: 256 VALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDAD------------ 303
Query: 577 DIGGGHVNPNKAMN 590
G G V A+
Sbjct: 304 -YGYGVVRAALAVQ 316
Score = 45.1 bits (107), Expect = 7e-05
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 21/135 (15%)
Query: 207 ASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVSIG 265
A+ N D G+ G AP + + G + +D+ ++AI V G
Sbjct: 84 AALNNDIGVV-----GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKD-G 137
Query: 266 NEIPLFSYIDQRDSIAIGSF--------------HAIAKGITVVSSAGNDGPVAQTIVNT 311
+ I D + S A GI +V+++GN+G + +
Sbjct: 138 DGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAA 197
Query: 312 APWIITVGATTIDRA 326
P +I VGA +
Sbjct: 198 YPEVIAVGAIDSNDN 212
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel,
hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1
PDB: 1wme_A 1wmf_A
Length = 434
Score = 97.3 bits (242), Expect = 2e-21
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 16/133 (12%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP------IGSKDIQGYALLSGTSMSC 523
VA FSSRGP +KPD++APG ILSA + YA + GTSM+
Sbjct: 201 HVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 524 PHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHV 583
P VAG A ++ + +L+ A G + + G G V
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG--------LGYPNGNQGWGRV 310
Query: 584 NPNKAMNPGLVYD 596
+K++N V +
Sbjct: 311 TLDKSLNVAYVNE 323
Score = 71.5 bits (175), Expect = 4e-13
Identities = 43/205 (20%), Positives = 73/205 (35%), Gaps = 28/205 (13%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G+G I+ + DTG+ D G + + ++G +N G +
Sbjct: 21 GQGQIVAVADTGL--------DTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHV 72
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTD---ADVLKAFDKAIHD 255
G + ++ +G AP A+L G +++ F +A
Sbjct: 73 AGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSA 121
Query: 256 GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN--TAP 313
G + + S G + D R+ +T++ +AGN+GP TI TA
Sbjct: 122 GARIHTNSWGAAVNGAYTTDSRNVDDY----VRKNDMTILFAAGNEGPNGGTISAPGTAK 177
Query: 314 WIITVGATTIDRAFPTAITLGNHQV 338
ITVGAT R + + V
Sbjct: 178 NAITVGATENLRPSFGSYADNINHV 202
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 97.3 bits (242), Expect = 3e-21
Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 38/138 (27%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQ----------------GY 513
++ FS+ G N DI APG K + Y
Sbjct: 348 NLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRY 400
Query: 514 ALLSGTSMSCPHVAGIAALIKS-LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKE 572
+GT+++ P V+G ALI H + P L + + +
Sbjct: 401 IYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSRY-------- 452
Query: 573 ADPFDIGGGHVNPNKAMN 590
G G ++ KA+N
Sbjct: 453 ------GHGELDVYKALN 464
Score = 60.3 bits (146), Expect = 2e-09
Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 27/136 (19%)
Query: 216 AAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYID 275
A G G AP +Y+ V KA +A +DG V+++S+G+ I L
Sbjct: 211 ANGKLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDH 270
Query: 276 QRDSIAIGSFH---------AIAKGITVVSSAGNDGPVAQTIVNTA-------------- 312
Q + A K VV++AGNDG
Sbjct: 271 QTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDV 330
Query: 313 ----PWIITVGATTID 324
++TVG+T
Sbjct: 331 PASMDNVVTVGSTDQK 346
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 96.0 bits (239), Expect = 3e-21
Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 42/134 (31%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+ASFS+R P ++ APGVDILS YP Y L GT+M+ PHV+G+
Sbjct: 287 NIASFSNRQP----------EVSAPGVDILSTYPD------DSYETLMGTAMATPHVSGV 330
Query: 530 AALIKSLHR-------------DWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPF 576
ALI++ + D S +R L TA G G +
Sbjct: 331 VALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDAD------------ 378
Query: 577 DIGGGHVNPNKAMN 590
G G V A+
Sbjct: 379 -YGYGVVRAALAVQ 391
Score = 63.2 bits (154), Expect = 1e-10
Identities = 47/296 (15%), Positives = 87/296 (29%), Gaps = 63/296 (21%)
Query: 66 EAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFM---- 121
I+Y +K + K+ ++PGV +V + L SW
Sbjct: 20 LGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQ 78
Query: 122 -------GLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKG 174
G+ ++ S + ++DTGV + +
Sbjct: 79 PAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANI---------AWC 129
Query: 175 ICQKGEKFNSSNCNRKLIGARWFIKGIMDM---------INASTNTDEGLAAGLARGGAP 225
+ K ++ + D A+ N D G+ G AP
Sbjct: 130 VSTLRGKVSTKLRD------------CADQNGHGTHVIGTIAALNNDIGVV-----GVAP 172
Query: 226 LAHLAIYKACWDIGC-TDADVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGS 284
+ + G + +D+ ++AI V G+ I D + S
Sbjct: 173 GVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKD-GDGIIAGDPDDDAAEVISMS 231
Query: 285 F--------------HAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRA 326
A GI +V+++GN+G + + P +I VGA +
Sbjct: 232 LGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDN 287
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 93.2 bits (232), Expect = 1e-20
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 27/126 (21%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPP-IGSKDIQGYALLSGTSMSCPHVAG 528
ASFS+ G + D+ APG DILS Y+ ++GTSM+ PHV+G
Sbjct: 233 IRASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSDAYSFMAGTSMATPHVSG 284
Query: 529 IAALIKSL----HRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVN 584
+AAL+ S +++ +PA ++ LV+T S G G V+
Sbjct: 285 VAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRAL--------------GSGIVD 330
Query: 585 PNKAMN 590
A+N
Sbjct: 331 AEAAVN 336
Score = 58.2 bits (141), Expect = 4e-09
Identities = 44/220 (20%), Positives = 74/220 (33%), Gaps = 49/220 (22%)
Query: 139 GEGTIIGIIDTGVWP---------------ESESFSDKGMGQAPVPPHWKGICQKGEKFN 183
G+ ++ ++DTG+ + S G G+ P
Sbjct: 31 GQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWFDNWACGG 90
Query: 184 SSNCNRKLIGARW---FIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC 240
+ ++ + W + G I A TN G+A G A A + +A G
Sbjct: 91 RPDPRKERSDSSWHGSHVAGT---IAAVTNNRIGVA-----GVAYGAKVVPVRALGRCGG 142
Query: 241 TDADVLKAFDKAI----------HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAK 290
D+D+ A + V+++S+G++ I A
Sbjct: 143 YDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSD----GQCSYNAQTMIDR--ATRL 196
Query: 291 GITVVSSAGNDGPVAQTIVNTAP----WIITVGATTIDRA 326
G VV +AGN+ Q NT P +++VGATT
Sbjct: 197 GALVVVAAGNEN---QNASNTWPTSCNNVLSVGATTSRGI 233
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 91.1 bits (227), Expect = 3e-20
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+SFS+ G + DI APG I S++ S +SGTSM+ PHVAG+
Sbjct: 186 SRSSFSNYGT-----CL---DIYAPGSSITSSW--YTSNS--ATNTISGTSMASPHVAGV 233
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
AAL + + SPA + + L T A+
Sbjct: 234 AALYLDENPNLSPAQVTNLLKTRATA 259
Score = 40.6 bits (96), Expect = 0.001
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 241 TDADVLKAFDKAI--HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
+++ V+ + G V ++S+G D A+ + A+A GIT V +A
Sbjct: 106 SNSGVIAGINWVKNNASGPAVANMSLG-----GGASQATDD-AVNA--AVAAGITFVVAA 157
Query: 299 GNDGPVAQTIV-NTAPWIITVGATTID 324
GND A A ITVG+TT +
Sbjct: 158 GNDNSNACNYSPARAADAITVGSTTSN 184
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 90.3 bits (225), Expect = 5e-20
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
ASFS+ G V D+ APG I SA+ S L+GTSM+ PHVAG+
Sbjct: 184 ARASFSNYGS-----CV---DLFAPGASIPSAW--YTSDT--ATQTLNGTSMATPHVAGV 231
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
AAL + +PA++ SA++ A+
Sbjct: 232 AALYLEQNPSATPASVASAILNGATT 257
Score = 41.4 bits (98), Expect = 8e-04
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 18/118 (15%)
Query: 214 GLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVD--VLSVSIGNEIPL 270
G G+ G A +L + G + + V+ D + V ++S+G
Sbjct: 76 GTIGGVTYGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLG----- 130
Query: 271 FSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT----APWIITVGATTID 324
D+ A+ + +IA G+ +AGND A N +TVGATT
Sbjct: 131 GGVSTALDN-AVKN--SIAAGVVYAVAAGNDNANA---CNYSPARVAEALTVGATTSS 182
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 90.3 bits (225), Expect = 5e-20
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+SFS+ G V D+ APG I SA+ GY +SGTSM+ PHVAG+
Sbjct: 184 SRSSFSNWGS-----CV---DLFAPGSQIKSAW--YDG----GYKTISGTSMATPHVAGV 229
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
AAL + +P + L + AS+
Sbjct: 230 AALYLQENNGLTPLQLTGLLNSRASE 255
Score = 39.9 bits (94), Expect = 0.002
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 241 TDADVLKAFDKAI--HDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
T + V+ D G V ++S+G DS A+ AI G++ + +A
Sbjct: 104 TTSGVISGVDWVAQNASGPSVANMSLG-----GGQSTALDS-AVQG--AIQSGVSFMLAA 155
Query: 299 GNDGPVAQTIV-NTAPWIITVGATTID 324
GN A P +TVG+TT
Sbjct: 156 GNSNADACNTSPARVPSGVTVGSTTSS 182
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 90.0 bits (223), Expect = 1e-18
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+ + + G N V D+ APG DI+ A + SGTS + HVAGI
Sbjct: 192 QPVTLGTLGTNF-GRCV---DLFAPGEDIIGAS--SDCST--CFVSQSGTSQAAAHVAGI 243
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
AA++ S + + A +R L+ +++
Sbjct: 244 AAMMLSAEPELTLAELRQRLIHFSAK 269
Score = 45.3 bits (107), Expect = 8e-05
Identities = 37/230 (16%), Positives = 68/230 (29%), Gaps = 57/230 (24%)
Query: 134 TESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIG 193
+ G + ++DT + + R ++
Sbjct: 20 QPPDGGSLVEVYLLDTSIQSDHREIE----------------------------GRVMVT 51
Query: 194 ARWFIKGIMDMINASTNTDE--------GLAAGLARGGAPLAHLAIYKACWDIG-CTDAD 244
+ + G+ +G G A A + + G T +
Sbjct: 52 DFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDAGVAKGASMRSLRVLNCQGKGTVSG 111
Query: 245 VLKAFDKAIHD------GVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA 298
L + G V+ + + Y ++ A G+ +V++A
Sbjct: 112 TLIGLEFIRKSQLVQPVGPLVVLLPLA-----GGYSRVLNA-ACQR--LARAGVVLVTAA 163
Query: 299 GNDGPVAQTIV-NTAPWIITVGATTIDRAFPTAITLG-NHQVLWGQSIDI 346
GN A +AP +ITVGAT T TLG N +G+ +D+
Sbjct: 164 GNFRDDACLYSPASAPEVITVGATNAQDQPVTLGTLGTN----FGRCVDL 209
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 88.1 bits (218), Expect = 6e-18
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+ + + G N V D+ APG DI+ A + SGTS + HVAGI
Sbjct: 344 QPVTLGTLGTNF-GRCV---DLFAPGEDIIGAS--SDCST--CFVSQSGTSQAAAHVAGI 395
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
AA++ S + + A +R L+ +++
Sbjct: 396 AAMMLSAEPELTLAELRQRLIHFSAK 421
Score = 74.3 bits (182), Expect = 9e-14
Identities = 53/335 (15%), Positives = 101/335 (30%), Gaps = 76/335 (22%)
Query: 36 IVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKI 95
+V + K+ ++ R + K IL+ + GF +++ E
Sbjct: 79 VVVL--KEETHLSQSERTARRLQAQAARRGYLTK--ILHVFHGLLPGFLVKMSGDLLELA 134
Query: 96 AELPGVVQVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTE---SNMGEGTIIGIIDTGVW 152
+LP V + + + + W L + + E + G + ++DT +
Sbjct: 135 LKLPHVDYIEEDSSVFAQSI-PW---NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQ 190
Query: 153 PESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFIKGIMDMINASTNTD 212
+ R ++ + +
Sbjct: 191 SDHREIE----------------------------GRVMVTDFENVPEEDGTRFHRQASK 222
Query: 213 E--------GLAAGLARGGAPLAHLAIYKA--CWDIGCTDADVLKAFDKAIHD------G 256
G+ +G G A A + + C G T + L + G
Sbjct: 223 CDSHGTHLAGVVSGRDAGVAKGASMRSLRVLNCQGKG-TVSGTLIGLEFIRKSQLVQPVG 281
Query: 257 VDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT----A 312
V+ + + Y ++ A G+ +V++AGN A A
Sbjct: 282 PLVVLLPLA-----GGYSRVLNA-ACQR--LARAGVVLVTAAGNFRDDAC---LYSPASA 330
Query: 313 PWIITVGATTIDRAFPTAITLG-NHQVLWGQSIDI 346
P +ITVGAT T TLG N +G+ +D+
Sbjct: 331 PEVITVGATNAQDQPVTLGTLGTN----FGRCVDL 361
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 82.6 bits (205), Expect = 2e-17
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 15/86 (17%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
++FS+ G V DI APG I S + IG +SGTSM+ PH+AG+
Sbjct: 189 VRSTFSNYGR-----VV---DIFAPGTSITSTW--IGG----RTNTISGTSMATPHIAGL 234
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
AA + L S A+ + T +++
Sbjct: 235 AAYLFGLEGG-SAGAMCGRIQTLSTK 259
Score = 39.9 bits (94), Expect = 0.003
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 23/123 (18%)
Query: 214 GLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGVD-------VLSVSIG 265
G G A + K D G + ++++ D D V S+S+G
Sbjct: 76 GTIGSKTWGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLG 135
Query: 266 NEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT----APWIITVGAT 321
+ ++Q A + G+ V +AGND A NT P + TVGAT
Sbjct: 136 --GGYSAALNQ----AAAR--LQSSGVFVAVAAGNDNRDA---ANTSPASEPTVCTVGAT 184
Query: 322 TID 324
+
Sbjct: 185 DSN 187
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 81.5 bits (202), Expect = 4e-17
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
R +SFS+ G + DI PG DILS + IG +SGTSM+ PHVAG+
Sbjct: 188 RRSSFSNYGS-----VL---DIFGPGTDILSTW--IGG----STRSISGTSMATPHVAGL 233
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQ 555
AA + +L + A+ + TA++
Sbjct: 234 AAYLMTLG-KTTAASACRYIADTANK 258
Score = 39.5 bits (93), Expect = 0.003
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 287 AIAKGITVVSSAGNDGPVAQTIVNT----APWIITVGATTID 324
+ G+ V +AGN+ A N P + TVGA+
Sbjct: 148 LQSSGVMVAVAAGNNNADA---RNYSPASEPSVCTVGASDRY 186
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Length = 92
Score = 61.1 bits (148), Expect = 8e-12
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 796 PPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGY 855
PPK ++ L G+ + P +G G++ D T D G
Sbjct: 8 PPKFDPNEVK-----VVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGL 62
Query: 856 VIPVEITVYDDRSFTFILKTPPASVLLLKAAG 887
I V++T+ +R + P AS L ++G
Sbjct: 63 RITVKLTI-QNRQAQIEV-VPSASALSGPSSG 92
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 59.3 bits (143), Expect = 3e-09
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 11/122 (9%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG-YALLSGTSMSCPHVAG 528
V +S ++ + + + Q +GTS S P AG
Sbjct: 218 NVPWYSEACSST--------LATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAG 269
Query: 529 IAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
I AL +++ + ++ +V T+ + + G RK + + G G ++
Sbjct: 270 IIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY--GYGLLDAGAM 327
Query: 589 MN 590
+
Sbjct: 328 VA 329
Score = 38.5 bits (89), Expect = 0.011
Identities = 32/201 (15%), Positives = 57/201 (28%), Gaps = 40/201 (19%)
Query: 139 GEGTIIGIIDTGVWPESESFSDK--------GMGQAPVPPHWKGICQKGEKFNSSNCNRK 190
G G ++ I+D G+ + Q P P + N NR
Sbjct: 37 GHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPR---------YTQMNDNRH 87
Query: 191 LIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFD 250
G R + A N G A A + + TDA ++
Sbjct: 88 --GTRC-----AGEVAAVANNGVCGV-----GVAYNARIGGVRMLDGEV-TDAVEARSLG 134
Query: 251 KAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAI-----AKGITVVSSAGNDGPVA 305
+ + + S S G E + F + G V ++GN G
Sbjct: 135 LNP-NHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREH 193
Query: 306 QTI----VNTAPWIITVGATT 322
+ + + +++ + T
Sbjct: 194 DSCNCDGYTNSIYTLSISSAT 214
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 56.7 bits (136), Expect = 3e-08
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 10/122 (8%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+S M G I S+ GTS + P AG+
Sbjct: 231 LHPPYSEGCSAVM----AVTYSSGSGEYIHSSDINGRC-----SNSHGGTSAAAPLAAGV 281
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
L+ + + + ++ + +A + + + + K+ G G ++ +K +
Sbjct: 282 YTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSH-RYGFGKIDAHKLI 340
Query: 590 NP 591
Sbjct: 341 EM 342
Score = 48.2 bits (114), Expect = 9e-06
Identities = 51/286 (17%), Positives = 82/286 (28%), Gaps = 39/286 (13%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G G + I+D G+ E+E D + W + + G R
Sbjct: 53 GAGVVAAIVDDGLDYENEDLKDNFCAEGS----WDFNDNTNLPKPRLSDDYH--GTR--C 104
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVD 258
G I A + G A ++ + T D + + D D
Sbjct: 105 AGE---IAAKKGNNFCGV-----GVGYNAKISGIRIL-SGDITTEDEAASLIYGL-DVND 154
Query: 259 VLSVSIGNEIPLFSYIDQRDSIAIGSFHAI-----AKGITVVSSAGNDGPVAQTIV---- 309
+ S S G D + + +KG V ++GN G
Sbjct: 155 IYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGY 214
Query: 310 NTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSA 369
+ + IT+GA P ++ S G +S I
Sbjct: 215 TNSIYSITIGAIDHKDLHPPYSE-------GCSAVMAVTYSSGSGEYIHSSDI---NGRC 264
Query: 370 NDCRQG-SLNATLAAGKIILCFS-RPDTQDIQSAAISVTQAGGVGL 413
++ G S A LAAG L P+ +S+ A G+
Sbjct: 265 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEK 310
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 3e-08
Identities = 106/674 (15%), Positives = 187/674 (27%), Gaps = 222/674 (32%)
Query: 244 DVLKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKG---ITVVSSAGN 300
D+L F+ A D D V + S ++ D I I S A++ + S
Sbjct: 20 DILSVFEDAFVDNFDCKDVQ-DMPKSILSK-EEIDHI-IMSKDAVSGTLRLFWTLLSKQE 76
Query: 301 DGPVAQTIVNTA-----PWIIT-VGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFT 354
+ + Q V ++++ + + T + + L+
Sbjct: 77 E--MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-------------- 120
Query: 355 GLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDT-QDIQSAAISVTQAGGVGL 413
ND N A + SR ++ A + + A V +
Sbjct: 121 ---------------ND------NQVFAKYNV----SRLQPYLKLRQALLELRPAKNVLI 155
Query: 414 IYAQFHTDGLDSCNLIPCIKVNYEVGTQIL------SYIRRARSP-------IAKLSSPE 460
G+ G + SY + + + +SPE
Sbjct: 156 -----D--GVLGS------------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 461 TVIGDLVS--PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSG 518
TV+ L ++ + + S + IQ L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSN------------------IKLRIHSIQAE--LRR 236
Query: 519 TSMSCPHVAGIAALIKSLHRD-WSPAAIRS------ALVTTASQTGTDG----------M 561
S P+ L+ L + + A + L+TT + TD +
Sbjct: 237 LLKSKPYE--NCLLV--L-LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 562 NIFEEGSTRKEA----------DPFDIGGGHVNPNKAM--NPGLVYDITVEDYIQFLC-- 607
+ T E P D+ P + + NP I E L
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL------PREVLTTNP-RRLSIIAESIRDGLATW 344
Query: 608 --FMGHNDASISRLTKSKINCLKNN-------HLAL---DLNLPSITIPNLHNNETVTVT 655
+ N ++ + +S +N L+ L++ ++P+I + + + +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 656 RKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNMTIKI----LSFRVTFFSNHKVHPV 711
V N +LVE TI I L +V + + +H
Sbjct: 405 MVVVN----KLHKYSLVEKQ------------PKESTISIPSIYLELKVKLENEYALHRS 448
Query: 712 PDAEYR----FGSLTWTDDSVDSRFNGFLSIHFNESSKSNQQLSCSLFP----------- 756
Y F S +D F + H +LF
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL---KNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 757 ------SAVNLSS---NSNVSLPFY-----DNKVKPSPLLSSTPRFLTVIAMAPPKPGGK 802
+A N S N+ L FY DN K L+++ FL PK
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-------PKIEEN 558
Query: 803 AKAKKVLGLIKLAL 816
K L+++AL
Sbjct: 559 LICSKYTDLLRIAL 572
Score = 46.8 bits (110), Expect = 3e-05
Identities = 94/686 (13%), Positives = 185/686 (26%), Gaps = 228/686 (33%)
Query: 4 RKTQLLRILVVILLQHHLQISLTLVGATSNVHIVYMGEKKYEDPVAITKSHHRFLSTVLG 63
+ LR+ +L + E+ + +F+ VL
Sbjct: 60 AVSGTLRLFWTLLSK---------------------QEEMVQ----------KFVEEVL- 87
Query: 64 SKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRSWEFMGL 123
+ L S + +T+ E+ L QV K + +R ++ L
Sbjct: 88 ---RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA----KYNVSRLQPYLKL 140
Query: 124 HYYQSSKNLSTESNMGEGTIIGIIDTG-VWPESESFSDKGMGQA-PVPPHWKGICQKGEK 181
Q+ L N+ I G++ +G W + + W
Sbjct: 141 R--QALLELRPAKNV---LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--------- 186
Query: 182 FNSSNCNRKLIGARWFIKGIMDMINA-STNTDEGLAAGLARGGAP-------------LA 227
N NCN + +++M+ D + L
Sbjct: 187 LNLKNCNSP--------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 228 HLAIYKAC-------WDIGCTDADVLKAFD-----------KAIHDGVDVLS---VSIGN 266
Y+ C + A AF+ K + D + + +S+ +
Sbjct: 239 KSKPYENCLLVLLNVQN-----AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 267 EIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIIT-VGATTIDR 325
+ + ++ + K + D P ++ T P ++ + + D
Sbjct: 294 HSMTLT---PDEVKSL-----LLK---YLDCRPQDLPRE--VLTTNPRRLSIIAESIRDG 340
Query: 326 AFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGK 385
T N W + ++ K++ + + +P + R+
Sbjct: 341 ----LATWDN----W-KHVNCDKLTTII-ESSLN---VLEPA---EYRK----------- 373
Query: 386 IILCFSR----PDTQDIQSAAISV----TQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE 437
F R P + I + +S+ V ++ + H L K E
Sbjct: 374 ---MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-------VEKQPKE 423
Query: 438 VGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVD 497
I S + + + I D + S D++ P +D
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-------------DLIPPYLD 470
Query: 498 --ILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI-----AALIKSLHRD--WSPAAIRSA 548
S + I G+ H+ I L + + D + IR
Sbjct: 471 QYFYS-H--I------GH-----------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 549 LVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYIQFLCF 608
+TA +N ++ ++ N Y+ V + FL
Sbjct: 511 --STAWNASGSILNTLQQ---------LKFYKPYICDNDP-----KYERLVNAILDFLPK 554
Query: 609 MGHNDASISRLTKSKINCLKNNHLAL 634
+ N L SK L +AL
Sbjct: 555 IEEN------LICSKYTDLL--RIAL 572
Score = 39.5 bits (91), Expect = 0.006
Identities = 53/381 (13%), Positives = 105/381 (27%), Gaps = 136/381 (35%)
Query: 602 YIQFLCFMGHNDASISRLTKSKINCLKNNH------LALDLNLPSI-------TIPNLHN 648
F + + + + + L+ N+ + + PS+ L+N
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 649 NETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEPEVISFNM--------TIKIL-SFR 699
+ V V+ + +AL+E + V+ + + + S++
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLE------LRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 700 VTFFSNHKVHPVPDAEYRFGSLTWTDDSVDSRFNGFLSIHFNESSKSN------QQLSCS 753
V + K+ W ++ + Q+L
Sbjct: 176 VQCKMDFKIF-------------W--------------LNLKNCNSPETVLEMLQKLLYQ 208
Query: 754 LFPSAVNLSSNS-NVSLPFYDNKVKPSPLLSSTPRFLTVIAMAPPKPGGKAKAKKVLGLI 812
+ P+ + S +S N+ L + + + LL S P + L L+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------------------ENCL-LV 249
Query: 813 KLALEAGKATPAPPVGPALGAKGVN----IMAF---CK----DYNARTADKAGYVIPVEI 861
L V AF CK + D I
Sbjct: 250 ---LL-----------------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 862 TVYDDRSFTFILKTPPASV-LLLKAAGVEKGSKDPKQ---------------QKVGKITI 905
++ D S T TP LLLK P++ + G T
Sbjct: 290 SL-DHHSMTL---TPDEVKSLLLKYLDCRP-QDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 906 EQLRAIATEKLPDLNCTSIES 926
+ + + +KL + +S+
Sbjct: 345 DNWKHVNCDKLTTIIESSLNV 365
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 3e-07
Identities = 110/691 (15%), Positives = 194/691 (28%), Gaps = 255/691 (36%)
Query: 243 ADVLKA-FDKAIHDGVDVLSVSIGNE----IPLFS----YI-DQRDSIAIGSFHAIAKGI 292
A L+ F+K + + + + +E L Y+ + +G F +
Sbjct: 30 ASQLQEQFNKILPEPTEGFAAD--DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN-- 85
Query: 293 TVVSS------AGND---------GPVAQTIVNTAPWI------ITVGATTIDR----AF 327
++ GND T+V T I + D+ A
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 328 PTAITLGNHQVLW---GQSIDIGKVSHGFTGL-----TYSERIAFDPDSANDCRQGSLNA 379
A+ GN Q++ GQ G F L TY + + + +
Sbjct: 146 FRAVGEGNAQLVAIFGGQ----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 380 TLAAGKI------ILCF-----SRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNL 428
TL A K+ IL + + PD + S IS
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC----------------------- 238
Query: 429 IPCIKVNYEVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLK 488
P I V Q+ Y+ A+ ++G +P L+
Sbjct: 239 -PLIGV-----IQLAHYVVTAK-----------LLG-----------------FTPGELR 264
Query: 489 PDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSA 548
L G + H G+ A
Sbjct: 265 S-------------------------YLKGATG---HSQGLVT----------------A 280
Query: 549 LVTTASQTGTDGMNIFEEGSTRKEADPFDIG--GGHVNPNKAMNPGLVYDITVEDYIQFL 606
+ + + F + F IG PN ++ P ++ D ++E+
Sbjct: 281 VAIAETDSWES----FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED-SLENNEGVP 335
Query: 607 CFMGHNDASISRLTKSKINCL---KNNHLALDLNLPSITIPNLHNNETVTVTRKVTNVGQ 663
M SIS LT+ ++ N+HL + I++ N N V+ G
Sbjct: 336 SPM----LSISNLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGAKNLVVS--------GP 382
Query: 664 INSAYEAL------VEAPYGVNMTVEP---EVISFNMTIKILSF-RVT--FFSNH--KVH 709
S Y L +AP G++ + P + F+ F V F S+
Sbjct: 383 PQSLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSN-----RFLPVASPFHSHLLVPAS 436
Query: 710 PVPDAEYRFGSLTWTDDSVDSRFNGFLSIH-FNESSKSN-QQLSCSLFPSAVNLSSNSNV 767
+ + + ++++ + I ++ S+ + LS S+ V+ +
Sbjct: 437 DLINKDLVKNNVSFNAKD--------IQIPVYDTFDGSDLRVLSGSISERIVDC----II 484
Query: 768 SLPFY-DNKVKPSPLLSSTPRFLT-VIAMAPPKPGGKAKAKKVLGLIKLALEAGKATPAP 825
LP + + T ++ PGG GL L
Sbjct: 485 RLPVKWETTTQFKA---------THILDFG---PGG------ASGLGVL----------- 515
Query: 826 PVGPALGAKGVN-IMAFCKDYNARTADKAGY 855
GV I+A + D G+
Sbjct: 516 -THRNKDGTGVRVIVA--GTLDINPDDDYGF 543
Score = 50.0 bits (119), Expect = 4e-06
Identities = 86/506 (16%), Positives = 143/506 (28%), Gaps = 172/506 (33%)
Query: 432 IKVNYEVGTQILSYIRRARSP-IAKLSSP-ETVIGD--------LVSPR----VASFSSR 477
++ V T + + L P E D LV + V+S
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG-KFLGYVSSLVEP 74
Query: 478 GPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYA--LLSGTSMSCPHVAGIAALIKS 535
VL + + + Y + DI A LL + + LIK+
Sbjct: 75 SKVGQFDQVLNLCLT----EFENCY--LEGNDIHALAAKLLQENDTT---LVKTKELIKN 125
Query: 536 -------LHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG-GHVNPNK 587
R + + SAL + + IF GG G N +
Sbjct: 126 YITARIMAKRPFDKKS-NSALFRAVGEGNAQLVAIF--------------GGQG--NTDD 168
Query: 588 AMNPGL--VYDI---TVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLN----- 637
L +Y V D I+F ++S L ++ ++ K L++
Sbjct: 169 YF-EELRDLYQTYHVLVGDLIKFS------AETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 638 ----------------LPSITIPNLHNNETVTVTRKVT--NVGQINSAYEALVEAPYGVN 679
P I + L + VT K+ G++ S + G+
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAH---YVVTAKLLGFTPGELRSYLKGATGHSQGL- 277
Query: 680 MTVEPEVIS--------FNMTIKILSFRVTFFS---NHKVHPVPDAEYRFGSLTWTDDSV 728
V I+ F K + V FF ++ +P + +DS+
Sbjct: 278 --VTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNTSLP-----PSILEDSL 328
Query: 729 DSRFNGF------LSI-------------HFNESSKSNQQLSCSLF--PSAVNLSSNS-- 765
+ N LSI N + +Q+ SL + +S
Sbjct: 329 E---NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 766 ----NVSL--------------PFYDNKVKPSPLLSSTPRFLTVIA------MAPPKPGG 801
N++L PF + K+K S RFL V + + P
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS------NRFLPVASPFHSHLLVP----- 434
Query: 802 KAKAKKVLGLIKLALEAGKATPAPPV 827
A L+K + PV
Sbjct: 435 -ASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 48.1 bits (114), Expect = 2e-05
Identities = 53/304 (17%), Positives = 98/304 (32%), Gaps = 105/304 (34%)
Query: 121 MGLHYYQSS---KNL------STESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPH 171
MG+ Y++S +++ + G +I+ I+ P + + H
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGF-SILDIVINN--PVNLTI------------H 1675
Query: 172 WKGICQKG----EKFNSSNCNRKLIGARWFIKGIMDMINASTNT-----DEG-------- 214
+ G +KG E +++ + G K I IN + + ++G
Sbjct: 1676 FGG--EKGKRIRENYSAMIFETIVDGKLKTEK-IFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 215 ----LAAGLA-------RGGAP----LA-H-LAIYKACWDIGCTDADVLKAFDKAIHDGV 257
A +G P A H L Y A + ADV+ +I V
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL----ASLADVM-----SIESLV 1783
Query: 258 DVLSV---SIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGND------------- 301
+V+ ++ +P RD + ++ IA V+++ +
Sbjct: 1784 EVVFYRGMTMQVAVP-------RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 302 -GPVAQTIVN--TAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTY 358
G + + IVN RA T + N L Q IDI ++ +
Sbjct: 1837 TGWLVE-IVNYNVENQQYVAAGDL--RALDTVTNVLNFIKL--QKIDIIELQKSLS---- 1887
Query: 359 SERI 362
E +
Sbjct: 1888 LEEV 1891
Score = 41.6 bits (97), Expect = 0.002
Identities = 54/273 (19%), Positives = 89/273 (32%), Gaps = 106/273 (38%)
Query: 723 WTDDSVDSRFN---GF------------LSIHFN----------------ESSKSNQQLS 751
W + D+ F GF L+IHF E+ + +
Sbjct: 1646 W--NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 752 CSLFPSAVNLSSNSNVSLPFYDNKVKPSPLLSST----PRFLTVIAMAPP---KPGGKAK 804
+F S+ S F LLS+T P LT++ A K G
Sbjct: 1704 EKIFKEINEHST----SYTFRS----EKGLLSATQFTQPA-LTLMEKAAFEDLKSKGLIP 1754
Query: 805 AKKV-----LG----LIKLA----LEA--------GKA-TPAPPVGPALGAKGVNIMA-- 840
A LG L LA +E+ G A P LG ++A
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE-LGRSNYGMIAIN 1813
Query: 841 -------FCKD----YNARTADKAGYVIPVEITV-YDDRSFTFILKTPPASVLLLKAAG- 887
F ++ R + G++ VEI V Y+ + ++ AAG
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWL--VEI-VNYNVENQQYV------------AAGD 1858
Query: 888 ---VEKGSKDPKQQKVGKITIEQLR-AIATEKL 916
++ + K+ KI I +L+ +++ E++
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 38.1 bits (88), Expect = 0.015
Identities = 45/301 (14%), Positives = 88/301 (29%), Gaps = 107/301 (35%)
Query: 554 SQT-GTDGMNIFEEGSTRKE----ADPF----------DIGGGHV--NPNK--AMNPG-- 592
SQ G GM++++ ++ AD DI V NP G
Sbjct: 1626 SQEQGM-GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI----VINNPVNLTIHFGGEK 1680
Query: 593 ----------LVYDITVEDYIQFLCFMGHNDASISRLTKSKINCLKNNHLALDLNLPSIT 642
++++ V+ ++ + + T L+ T
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF--------RSEKGLLSATQFT 1732
Query: 643 IPNLHNNETVTVTR------KVTNVGQINSA--------YEALV-EAPYGVNMTVEPEVI 687
P L + + K + ++ Y AL A +V+
Sbjct: 1733 QPAL-----TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA----------DVM 1777
Query: 688 SFNMTIKILSFRVTFF-----------SNH--------KVHPVPDAEYRFGSLTWTDDSV 728
S ++++ +R SN+ +V E +L + + V
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE----ALQYVVERV 1833
Query: 729 DSRFNGFLSI-HFNESSKSNQQLSCSLFPSAVNLSSN--SNVSLPFYDNKVKPSPLLSST 785
R + I ++N NQQ + A++ +N + + L K+ L S
Sbjct: 1834 GKRTGWLVEIVNYNV---ENQQYVAAGDLRALDTVTNVLNFIKL----QKIDIIELQKSL 1886
Query: 786 P 786
Sbjct: 1887 S 1887
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 49.6 bits (117), Expect = 4e-06
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 36/147 (24%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQG----------------- 512
+S+SS G N + A G + + P + + D+ G
Sbjct: 266 VRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLH 317
Query: 513 -----------YALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGM 561
+++GTS + P +G AL+ S + D S +R L +A++
Sbjct: 318 GNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQ 377
Query: 562 NIFEEGSTRKEADPFDIGGGHVNPNKA 588
+ ++ G N A
Sbjct: 378 PVMVSYTSSTGKVRDVKGLEGWERNAA 404
Score = 33.8 bits (76), Expect = 0.32
Identities = 33/225 (14%), Positives = 59/225 (26%), Gaps = 68/225 (30%)
Query: 139 GEGTIIGIIDTGV-----------WPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNC 187
G G + ++D G+ P S++ P P + + ++
Sbjct: 69 GHGVNVAVVDDGLAIAHPDLADNVRPGSKNVVTG--SDDPTPTDP-------DTGHGTSV 119
Query: 188 NRKLIGARWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYK--ACWDIGCTDADV 245
GI+ A+ + G +G AP A L + +
Sbjct: 120 -----------SGII----AAVDNAIG-----TKGIAPRAQLQGFNLLDDNSQQLQKDWL 159
Query: 246 LKAFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAI---------------------GS 284
D V + S + + D +
Sbjct: 160 YALGDSNASRDNRVFNHSYRMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNG 219
Query: 285 FHAIAKGITVVSSAGNDGPVAQTIVN-----TAPWIITVGATTID 324
F+ IA G V++ GN + N + W + V A D
Sbjct: 220 FNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSNFWNLVVSALNAD 264
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Length = 114
Score = 40.8 bits (95), Expect = 2e-04
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 36 IVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKI 95
+V + K+ ++ R + K IL+ + GF +++ E
Sbjct: 41 VVVL--KEETHLSQSERTARRLQAQAARRGYLTK--ILHVFHGLLPGFLVKMSGDLLELA 96
Query: 96 AELPGVVQVIPNGILKLH 113
+LP V + + +
Sbjct: 97 LKLPHVDYIEEDSSVFAQ 114
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P
3p5c_P
Length = 124
Score = 38.6 bits (89), Expect = 0.001
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 36 IVYMGEKKYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKI 95
+V + K E ++ ++ R L + IL+ + GF +++ E
Sbjct: 51 VVVL---KEETHLSQSERTARRLQAQAA-RRGYLTKILHVFHGLLPGFLVKMSGDLLELA 106
Query: 96 AELPGVVQVIPNGI 109
+LP V + +
Sbjct: 107 LKLPHVDYIEEDSS 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.18
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 8/34 (23%)
Query: 802 KAKAKKVLGLIKLALEAGKATPAPPVGPALGAKG 835
K KK+ +KL A PAL K
Sbjct: 19 KQALKKLQASLKLY--------ADDSAPALAIKA 44
Score = 29.9 bits (66), Expect = 2.2
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 13/40 (32%)
Query: 342 QSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATL 381
Q++ K L S ++ + DSA ++ AT+
Sbjct: 20 QALK--K-------LQASLKL-YADDSAPAL---AIKATM 46
Score = 29.1 bits (64), Expect = 4.2
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 12/39 (30%)
Query: 565 EEGSTRK-EAD--PFDIGGGHVNPNKAMNPGLVYDITVE 600
E+ + +K +A + + A P L T+E
Sbjct: 18 EKQALKKLQASLKLYA-------DDSA--PALAIKATME 47
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex,
hydrolase, metal- binding, protease, secreted, serine
protease, sporulation; 1.71A {Bacillus
amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Length = 80
Score = 29.9 bits (67), Expect = 0.68
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 66 EAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLHTTRS 117
+ +K+ +A L + E++ + P V V + + + + S
Sbjct: 30 SEKGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSATS 80
>2l0d_A Cell surface protein; structural genomics, northeast structural
genomics consortiu PSI-2, protein structure initiative;
NMR {Methanosarcina acetivorans}
Length = 114
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 635 DLNLPSITIPNLHNNETVTVTRKVTNVGQINS 666
DL S+T + N T+T + N G +S
Sbjct: 4 DLVPVSLTPVTVVPNTVNTMTATIENQGNKDS 35
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor,
glucose dehydrogenas structural genomics, NPPSFA; 1.90A
{Thermus thermophilus}
Length = 352
Score = 28.9 bits (65), Expect = 8.2
Identities = 16/82 (19%), Positives = 21/82 (25%), Gaps = 18/82 (21%)
Query: 319 GATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLN 378
+ R +V+ H RIAF PD G L
Sbjct: 103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLH------SGGRIAFGPD-------GMLY 149
Query: 379 ATLAAGKIILCFSRPDTQDIQS 400
T + R QD+ S
Sbjct: 150 VTTGEV-----YERELAQDLAS 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,530,752
Number of extensions: 906936
Number of successful extensions: 2313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2156
Number of HSP's successfully gapped: 103
Length of query: 954
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 851
Effective length of database: 3,825,930
Effective search space: 3255866430
Effective search space used: 3255866430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)