RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 042478
(954 letters)
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 124 bits (313), Expect = 1e-34
Identities = 43/74 (58%), Positives = 56/74 (75%)
Query: 870 TFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMR 929
TFI KTPPA+VLL KAAG+E GS +P + KV I +++R IA K+PDLN SIE+AMR
Sbjct: 1 TFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMR 60
Query: 930 IIAGTAANMGIDID 943
+I GTA +MGI ++
Sbjct: 61 MIEGTARSMGIVVE 74
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1
{Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Length = 435
Score = 133 bits (335), Expect = 6e-34
Identities = 75/484 (15%), Positives = 143/484 (29%), Gaps = 87/484 (17%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
I IID+G + + G + N N +
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNANNVTGTNNSGT-------GNWYQPGNNN----AHGTHV 69
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIY--KACWDIGCTDADVLKAFDKAIHDG 256
G + A+ +EG+ G P + I+ K + G + L A +
Sbjct: 70 AGTI----AAIANNEGVV-----GVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNS 120
Query: 257 VDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWII 316
V++ + ++ + + ++++AGN G + + + ++
Sbjct: 121 GGANVVTMSLGGSGSTTTERNALNTHYNNGVL-----LIAAAGNAGDSSYSYPASYDSVM 175
Query: 317 TVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGS 376
+V A + + + G I + +T E D
Sbjct: 176 SVAAVDSNLDHAAFSQYTDQVEISGPGEAI------LSTVTVGEGRLADITIGGQS---- 225
Query: 377 LNATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNY 436
+ G + P A I+ + G + N N
Sbjct: 226 ---YFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTV----------NGTSFSCGNM 272
Query: 437 EVGTQILSYIRRARSPIAKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVL--KPDIVAP 494
++ + S +++S + + +S P +P ++ DI P
Sbjct: 273 ANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVP 332
Query: 495 GVDILSAYPP-----------IGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPA 543
V + A + ++ Q Y +GTSM+ PHV+G+A L+ S H + S +
Sbjct: 333 SVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSAS 392
Query: 544 AIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMNPGLVYDITVEDYI 603
+R+AL TA G G G +N A Y+
Sbjct: 393 QVRAALNATADDLSVAG-------------RDNQTGYGMINAVAAK-----------AYL 428
Query: 604 QFLC 607
C
Sbjct: 429 DESC 432
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 70
Score = 119 bits (300), Expect = 6e-33
Identities = 44/69 (63%), Positives = 53/69 (76%)
Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYD 865
KKV+ ++KL L AGKATPAPPVGPALG G NIM F K +NA TA+ ++PVEIT+Y
Sbjct: 2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYA 61
Query: 866 DRSFTFILK 874
DRSFTF+ K
Sbjct: 62 DRSFTFVTK 70
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 71
Score = 119 bits (299), Expect = 9e-33
Identities = 44/71 (61%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 806 KKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVY 864
KKV +KL + AG A P+PPVGPALG +GVNIM FCK +NA+T + G IPV ITVY
Sbjct: 1 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY 60
Query: 865 DDRSFTFILKT 875
DRSFTF+ KT
Sbjct: 61 ADRSFTFVTKT 71
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 63
Score = 113 bits (284), Expect = 8e-31
Identities = 47/62 (75%), Positives = 53/62 (85%)
Query: 812 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTF 871
IKL L AGKATPAPPVGPALG GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTF
Sbjct: 2 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTF 61
Query: 872 IL 873
I+
Sbjct: 62 II 63
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 70
Score = 110 bits (276), Expect = 1e-29
Identities = 22/69 (31%), Positives = 42/69 (60%)
Query: 875 TPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGT 934
PP + L+ AG E GS +P++ V ++++Q++ IA +K PDL + +A + + GT
Sbjct: 2 VPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGT 61
Query: 935 AANMGIDID 943
++G+ I+
Sbjct: 62 CTSLGVTIE 70
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 92
Score = 109 bits (275), Expect = 2e-29
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 793 AMAPPKPGGKAKAKKVLGLIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADK 852
+ PPK + ++ L G+ + P +G G++ D T D
Sbjct: 5 SSGPPKF-----DPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDW 59
Query: 853 AGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAG 887
G I V++T+ +R I P AS L ++G
Sbjct: 60 KGLRITVKLTIQ-NRQAQ-IEVVPSASALSGPSSG 92
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 108 bits (271), Expect = 4e-29
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 876 PPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTA 935
PPA+VLL KAAG++ GS P + KVGKI+ QL+ IA K D+ IE+ R I GTA
Sbjct: 1 PPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTA 60
Query: 936 ANMGIDID 943
+MG+ ++
Sbjct: 61 RSMGLVVE 68
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 67
Score = 107 bits (268), Expect = 1e-28
Identities = 38/67 (56%), Positives = 54/67 (80%)
Query: 875 TPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGT 934
TPPAS L+ KAAG+EKG+ P ++KVG+IT EQ+ IA +K+PDLN T +E+A R+IAG+
Sbjct: 1 TPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNTTDLEAAARMIAGS 60
Query: 935 AANMGID 941
A +MG++
Sbjct: 61 ARSMGVE 67
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 107 bits (269), Expect = 1e-28
Identities = 42/69 (60%), Positives = 56/69 (81%)
Query: 874 KTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAG 933
KTPPAS LL KAAG+EKGS +PK++ VGK+T +Q+ IA K+PDLN S+E+AM+II G
Sbjct: 1 KTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEG 60
Query: 934 TAANMGIDI 942
TA +MGI++
Sbjct: 61 TAKSMGIEV 69
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 103 bits (259), Expect = 2e-27
Identities = 35/68 (51%), Positives = 47/68 (69%)
Query: 876 PPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTA 935
PP S L+ KAAG+ KGS P + KVGK+ EQ+ IA K+PDLN S+E+A +AGTA
Sbjct: 1 PPMSYLIRKAAGLSKGSATPNKAKVGKLNWEQVLEIAKTKMPDLNAGSLEAAANTVAGTA 60
Query: 936 ANMGIDID 943
+MG+ I+
Sbjct: 61 RSMGVTIE 68
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans
[TaxId: 93466]}
Length = 671
Score = 82.0 bits (201), Expect = 1e-16
Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 25/133 (18%)
Query: 482 MSPAVLKPDIVAPGVDILSAYPPIGSKDIQG------------YALLSGTSMSCPHVAGI 529
S + APGV ILS P S +G Y GTSM+ PHV G+
Sbjct: 331 FSSRSDGVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGV 390
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
A++ + P IR L TA +G + D G G V + A+
Sbjct: 391 VAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD-------------HDTGYGLVKLDAAL 437
Query: 590 NPGLVYDITVEDY 602
L VE++
Sbjct: 438 QGPLPTQGGVEEF 450
Score = 49.7 bits (117), Expect = 2e-06
Identities = 47/341 (13%), Positives = 82/341 (24%), Gaps = 72/341 (21%)
Query: 43 KYEDPVAITKSHHRFLSTVLGSKEAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVV 102
Y D + K + K + + +G + K L G+
Sbjct: 37 GYNDRSEVDKIVKA-----VNGKVVLELPQIKVVSIKLNGMTVKQAY-DKIKALALKGIR 90
Query: 103 QVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNM------------------------ 138
V P+ +L + Y L++ +
Sbjct: 91 YVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE 150
Query: 139 --GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNR--KLIGA 194
G I+ ++DTGV + + + + S I A
Sbjct: 151 ASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAA 210
Query: 195 RWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-------TDADVLK 247
+ KGI G AP A + D D V
Sbjct: 211 KKDGKGI-------------------VGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAA 251
Query: 248 AFDKAIHDGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSA-GNDGPVAQ 306
A G V++ S + ++ +A+ G+ +V SA N
Sbjct: 252 GIIWATDHGAKVMNHS-------WGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHH 304
Query: 307 TIVNTAPWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIG 347
P +I V A + + +G
Sbjct: 305 QYPAGYPGVIQVAALDYYGGTFRVAGFSS----RSDGVSVG 341
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Length = 269
Score = 76.1 bits (186), Expect = 9e-16
Identities = 46/136 (33%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 454 AKLSSPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGY 513
A+ ++ V + ASFS G DIVAPGV++ S YP Y
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGAG--------LDIVAPGVNVQSTYPG------STY 208
Query: 514 ALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEA 573
A L+GTSM+ PHVAG AAL+K + WS IR+ L TA+ G+
Sbjct: 209 ASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTN------------- 255
Query: 574 DPFDIGGGHVNPNKAM 589
G G VN A
Sbjct: 256 ---LYGSGLVNAEAAT 268
Score = 43.0 bits (100), Expect = 9e-05
Identities = 33/222 (14%), Positives = 70/222 (31%), Gaps = 33/222 (14%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G G + ++DTG+ P +
Sbjct: 23 GSGVKVAVLDTGISTH---------------PDLNIRGGASFVPGEPSTQDGNGHGTHVA 67
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV 257
I + N+ P A L K G + + + + + A ++G+
Sbjct: 68 GTIAALNNSIGVLGVA----------PSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGM 117
Query: 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIIT 317
V ++S+G+ P + A ++G+ VV+++GN G + + +
Sbjct: 118 HVANLSLGSPSPSATLEQAV-------NSATSRGVLVVAASGNSGAGSISYPARYANAMA 170
Query: 318 VGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYS 359
VGAT + + G + +++ G T + +
Sbjct: 171 VGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLN 212
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg
[TaxId: 1423]}
Length = 274
Score = 75.8 bits (185), Expect = 1e-15
Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 30/128 (23%)
Query: 461 TVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTS 520
V + ASFSS G + +++APG + S YP YA L+GTS
Sbjct: 175 AVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYPT------NTYATLNGTS 220
Query: 521 MSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGG 580
M+ PHVAG AALI S H + S + +R+ L +TA+ G+ F G
Sbjct: 221 MASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS----------------FYYGK 264
Query: 581 GHVNPNKA 588
G +N A
Sbjct: 265 GLINVEAA 272
Score = 47.2 bits (111), Expect = 4e-06
Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 36/203 (17%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G + ++DTG+ + G G F + +
Sbjct: 23 GANVKVAVLDTGIQASHPDLNVVG----------------GASFVAGEA--------YNT 58
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV 257
G + + G AP L K G + + ++ + A +G+
Sbjct: 59 DGNGHGTHVAGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM 118
Query: 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV----NTAP 313
DV++ ++ +A A+G+ VV++AGN G T
Sbjct: 119 DVIN-------MSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYD 171
Query: 314 WIITVGATTIDRAFPTAITLGNH 336
+I VGA + + ++G
Sbjct: 172 SVIAVGAVDSNSNRASFSSVGAE 194
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens,
Novo/BPN' [TaxId: 1390]}
Length = 281
Score = 75.3 bits (184), Expect = 2e-15
Identities = 43/120 (35%), Positives = 56/120 (46%), Gaps = 30/120 (25%)
Query: 470 RVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGI 529
+ ASFSS GP + D++APGV I S P Y +GTSM+ PHVAG
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLPG------NKYGAYNGTSMASPHVAGA 230
Query: 530 AALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAM 589
AALI S H +W+ +RS+L T ++ G D F G G +N A
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKLG----------------DSFYYGKGLINVQAAA 274
Score = 50.7 bits (120), Expect = 3e-07
Identities = 38/203 (18%), Positives = 66/203 (32%), Gaps = 35/203 (17%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G + +ID+G+ G G S N F
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLKVAG----------------GASMVPSETN-------PFQ 59
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV 257
+ + + G AP A L K G + ++ + AI + +
Sbjct: 60 DNNSHGTHVAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNM 119
Query: 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIV----NTAP 313
DV+++S+G + D A+A G+ VV++AGN+G + P
Sbjct: 120 DVINMSLGGPSGSAALKAAVD-------KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYP 172
Query: 314 WIITVGATTIDRAFPTAITLGNH 336
+I VGA + ++G
Sbjct: 173 SVIAVGAVDSSNQRASFSSVGPE 195
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId:
1421]}
Length = 309
Score = 73.4 bits (178), Expect = 2e-14
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 488 KPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRS 547
+I APG + S + GY +SGTSM+ PHV+G+AA I + + S +RS
Sbjct: 224 DIEISAPGSSVYSTWYN------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRS 277
Query: 548 ALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVN 584
L A G G D + G G
Sbjct: 278 NLQERAKSVDIKG------GYGAAIGDDYASGFGFAR 308
Score = 36.4 bits (82), Expect = 0.015
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 15/59 (25%)
Query: 103 QVIPNGILKLHTTRSWEFMGLHYYQSSKNLSTESNMGEGTIIGIIDTGVWPESESFSDK 161
Q IP GI ++ + T + G G I ++DTGV +
Sbjct: 4 QQIPWGIKAIYNNDTL---------------TSTTGGSGINIAVLDTGVNTSHPDLVNN 47
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43,
N-terminal domain {Bacillus sp. KSM-KP43 [TaxId:
109322]}
Length = 318
Score = 64.5 bits (155), Expect = 1e-11
Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
Query: 479 PNSMSPAVLKPDIVAPGVDILSAYPP------IGSKDIQGYALLSGTSMSCPHVAGIAAL 532
+KPD++APG ILSA + YA + GTSM+ P VAG A
Sbjct: 208 RGPTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQ 267
Query: 533 IKSLHRD-----WSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNK 587
++ P+ +++AL+ A+ G N + G G V +K
Sbjct: 268 LREHFVKNRGITPKPSLLKAALIAGAADIGLGYPN-------------GNQGWGRVTLDK 314
Query: 588 AMN 590
++N
Sbjct: 315 SLN 317
Score = 32.9 bits (73), Expect = 0.17
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 139 GEGTIIGIIDTGVWPESESFSD 160
G+G I+ + DTG+ S
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSM 42
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 334
Score = 64.4 bits (155), Expect = 2e-11
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 517 SGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPF 576
+GTS S P AGI AL +++ + ++ +V T+ + + G RK + +
Sbjct: 257 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 316
Query: 577 DIGGGHVNPNKAMN 590
G G ++ +
Sbjct: 317 --GYGLLDAGAMVA 328
Score = 40.2 bits (92), Expect = 8e-04
Identities = 17/163 (10%), Positives = 38/163 (23%), Gaps = 10/163 (6%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G G ++ I+D G+ + A + + + ++ A
Sbjct: 36 GHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVA 95
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVD 258
+ + G R A+ + + + G +
Sbjct: 96 AVANNGVCGVGVAYNARIGG-VRMLDGEVTDAVEARSLGLNPNHIHIY-----SASWGPE 149
Query: 259 VLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGND 301
++ L R G V ++GN
Sbjct: 150 DDGKTVDGPARLAEEAFFRGVSQ----GRGGLGSIFVWASGNG 188
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 59.4 bits (142), Expect = 7e-10
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 517 SGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPF 576
GTS + P AG+ L+ + + + ++ + +A + + + + K+
Sbjct: 261 GGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 320
Query: 577 DIGGGHVNPNKAMN 590
G G ++ +K +
Sbjct: 321 -YGFGKIDAHKLIE 333
Score = 41.3 bits (95), Expect = 4e-04
Identities = 25/168 (14%), Positives = 44/168 (26%), Gaps = 23/168 (13%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G G + I+D G+ E+E D + + K +
Sbjct: 45 GAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDY------------- 91
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVD 258
A + G A ++ + T D + + D D
Sbjct: 92 ---HGTRCAGEIAAKKGNNFCGVGVGYNAKISGIRILSG-DITTEDEAASLIYGL-DVND 146
Query: 259 VLSVSIGNEIPLFSYIDQRDS-----IAIGSFHAIAKGITVVSSAGND 301
+ S S G D + + +KG V ++GN
Sbjct: 147 IYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNG 194
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp.,
AK.1 [TaxId: 1409]}
Length = 280
Score = 57.3 bits (137), Expect = 3e-09
Identities = 37/185 (20%), Positives = 57/185 (30%), Gaps = 29/185 (15%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G I +IDTGV K +
Sbjct: 30 SSGQEIAVIDTGVDYTHPDLDGK---------------------VIKGYDFVDNDYDPMD 68
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV 257
A E A G AP + +A G T +D+ A A G
Sbjct: 69 LNNHGTHVAGIAAAETNNATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGA 128
Query: 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIIT 317
+V+++S+G + + + +A KG VV++AGN+G + +I
Sbjct: 129 EVINLSLGCDCHTTTLENAV-------NYAWNKGSVVVAAAGNNGSSTTFEPASYENVIA 181
Query: 318 VGATT 322
VGA
Sbjct: 182 VGAVD 186
Score = 51.5 bits (122), Expect = 2e-07
Identities = 50/215 (23%), Positives = 74/215 (34%), Gaps = 33/215 (15%)
Query: 378 NATLAAGKIILCFSRPDTQDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYE 437
N + A + + DI A I +G + + + N
Sbjct: 96 NTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNYAWNKG 155
Query: 438 VGTQILSYIRRARSPIAKLSSPET--VIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPG 495
+ + + S V R+ASFS+ G D+VAPG
Sbjct: 156 SVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTW--------VDVVAPG 207
Query: 496 VDILSAYPPIGSKDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQ 555
VDI+S YA +SGTSM+ PHVAG+AAL+ S + + IR A+ TA +
Sbjct: 208 VDIVSTITG------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADK 259
Query: 556 TGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKAMN 590
G G +N A+
Sbjct: 260 ISGTGT---------------YFKYGRINSYNAVT 279
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium
album), strain limber [TaxId: 37998]}
Length = 279
Score = 53.6 bits (127), Expect = 4e-08
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 511 QGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQ 555
+SGTSM+ PHVAG+AA + +L + + +A R + TA++
Sbjct: 215 GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANK 258
Score = 33.5 bits (75), Expect = 0.100
Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 31/226 (13%)
Query: 135 ESNMGEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGA 194
+ + G+G+ + +IDTG+ F + + G + +R A
Sbjct: 26 DESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGNGHGTHCAGTVGSRTYGVA 85
Query: 195 RWFIKGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIH 254
+ + +++ + + I V +
Sbjct: 86 KKTQLFGVKVLDDNGSGQ----------------------YSTIIAGMDFVASDKNNRNC 123
Query: 255 DGVDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVN-TAP 313
V S+S+G + G+ V +AGN+ A+ + P
Sbjct: 124 PKGVVASLSLGGGYSSSVNSAA--------ARLQSSGVMVAVAAGNNNADARNYSPASEP 175
Query: 314 WIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYS 359
+ TVGA+ + G+ ++G DI G + + S
Sbjct: 176 SVCTVGASDRYDRRSSFSNYGSVLDIFGPGTDILSTWIGGSTRSIS 221
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
[TaxId: 2026]}
Length = 279
Score = 50.9 bits (120), Expect = 3e-07
Identities = 36/187 (19%), Positives = 54/187 (28%), Gaps = 29/187 (15%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G G I I+DTGV + K + +
Sbjct: 29 GSGAKIAIVDTGVQSNHPDLAGK---------------------VVGGWDFVDNDSTPQN 67
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIG-CTDADVLKAFDKAIHDGV 257
A + G AP A + + + G T V A G
Sbjct: 68 GNGHGTHCAGIAAAVTNNSTGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGA 127
Query: 258 DVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIIT 317
V+S+S+G + + +A KG VV++AGN G A I
Sbjct: 128 KVISLSLGGTVGNSGLQQAVN-------YAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIA 180
Query: 318 VGATTID 324
V +T +
Sbjct: 181 VASTDQN 187
Score = 46.6 bits (109), Expect = 7e-06
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 23/121 (19%)
Query: 469 PRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLSGTSMSCPHVAG 528
++ + +S S D+ APG I S YP YA LSGTSM+ PHVAG
Sbjct: 180 AVASTDQNDNKSSFSTYGSWVDVAAPGSSIYSTYPT------STYASLSGTSMATPHVAG 233
Query: 529 IAALIKSLHRDWSPAAIRSALVTTASQTGTDGMNIFEEGSTRKEADPFDIGGGHVNPNKA 588
+A L+ S + S + IR+A+ TA + G VN KA
Sbjct: 234 VAGLLAS--QGRSASNIRAAIENTA---------------DKISGTGTYWAKGRVNAYKA 276
Query: 589 M 589
+
Sbjct: 277 V 277
>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas
sp., sedolisin [TaxId: 306]}
Length = 369
Score = 45.8 bits (107), Expect = 2e-05
Identities = 30/237 (12%), Positives = 60/237 (25%), Gaps = 20/237 (8%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
T +GII G ++ + + N G+
Sbjct: 24 AANTTVGIITIGGVSQTLQDLQQFTSANGLAS--------------VNTQTIQTGSSNGD 69
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGC-TDADVLKAFDKAIHD-G 256
+ D + G A A + D + + +AF++A+ D
Sbjct: 70 YSDDQQGQGEWDLD----SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNV 125
Query: 257 VDVLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWII 316
V++VS+G + + A A+G T S+G++G
Sbjct: 126 AKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGST 185
Query: 317 TVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCR 373
+ A+ + V + S + +
Sbjct: 186 YSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWATGGGYSVYESK 242
Score = 43.1 bits (100), Expect = 1e-04
Identities = 36/321 (11%), Positives = 84/321 (26%), Gaps = 21/321 (6%)
Query: 279 SIAI---GSFHAIAKGITVVSSAGNDGPVAQTIVNTAPWIITVGATTIDRAFPTAITLGN 335
++ I G + + +SA V + T + +
Sbjct: 28 TVGIITIGGVSQTLQDLQQFTSANGLASVNTQTIQTGSSNGDYSDDQQGQGEWDLDSQSI 87
Query: 336 HQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSANDCRQGSLNATLAAGKIILCFSRPDT 395
G + + + + +D +N +L +
Sbjct: 88 VGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANAD-GTL 146
Query: 396 QDIQSAAISVTQAGGVGLIYAQFHTDGLDSCNLIPCIKVNYEVGTQILSYI-----RRAR 450
Q + G + + + P +
Sbjct: 147 QAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 206
Query: 451 SPIAKLSSPETVIGDLVSPRVASFSSRGPNS---MSPAVLKPDIVAPG------VDILSA 501
+ A S ETV + + +++ G S P+ PG + +A
Sbjct: 207 TTSAGAYSNETVWNEGLDSNGKLWATGGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAA 266
Query: 502 YPPIGS-KDIQGYALLSGTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTDG 560
+ + GTS++ P G+ A ++S + + +A +A +
Sbjct: 267 QGTGALIYNYGQLQQIGGTSLASPIFVGLWARLQSANS--NSLGFPAASFYSAISSTPSL 324
Query: 561 MNIFEEGSTRKEADPFDIGGG 581
++ + G+ ++ G G
Sbjct: 325 VHDVKSGNNGYGGYGYNAGTG 345
>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus
novosp. MN-32, kumamolisin [TaxId: 198803]}
Length = 357
Score = 43.9 bits (102), Expect = 6e-05
Identities = 13/102 (12%), Positives = 21/102 (20%), Gaps = 7/102 (6%)
Query: 458 SPETVIGDLVSPRVASFSSRGPNSMSPAVLKPDIVAPGVDILSAYPPIGSKDIQGYALLS 517
S + S+ PD+ ++
Sbjct: 222 SRIFPLPSWQERANVPPSANPGAGSG--RGVPDVAGNADPATGYEVV----IDGETTVIG 275
Query: 518 GTSMSCPHVAGIAALIKSLHRDWSPAAIRSALVTTASQTGTD 559
GTS P A + A I + L + D
Sbjct: 276 GTSAVAPLFAALVARINQ-KLGKPVGYLNPTLYQLPPEVFHD 316
Score = 40.9 bits (94), Expect = 5e-04
Identities = 41/253 (16%), Positives = 71/253 (28%), Gaps = 28/253 (11%)
Query: 139 GEGTIIGIIDTGVWPESESFSDKGMGQAPVPPHWKGICQKGEKFNSSNCNRKLIGARWFI 198
G+G I II G + S + P + G
Sbjct: 23 GQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGA------------------ 64
Query: 199 KGIMDMINASTNTDEGLAAGLARGGAPLAHLAIYKACWDIGCTDADVLKAFDKAIHDGVD 258
+ + L +A AP A +A+Y A + A
Sbjct: 65 TNQPTGDPNGPDGEVELDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVH-DPTHKPS 123
Query: 259 VLSVSIGNEIPLFSYIDQRDSIAIGSFHAIAKGITVVSSAGNDGPVAQTIVNT------- 311
++S+S G ++ A A G+TV+++AG+ G
Sbjct: 124 IVSISWGGPED-SWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPA 182
Query: 312 -APWIITVGATTIDRAFPTAITLGNHQVLWGQSIDIGKVSHGFTGLTYSERIAFDPDSAN 370
+P+++ G T + + G VS F ++ ER P +
Sbjct: 183 ASPYVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSANP 242
Query: 371 DCRQGSLNATLAA 383
G +A
Sbjct: 243 GAGSGRGVPDVAG 255
>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis
[TaxId: 1423]}
Length = 71
Score = 28.3 bits (63), Expect = 0.71
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 66 EAAKHSILYSYKHGFSGFAARLTKTQAEKIAELPGVVQVIPNGILKLH 113
+ +K+ + AA L + +++ + P V V + I +
Sbjct: 25 SQKGGKVEKQFKY-VNAAAATLDEKAVKELKKDPSVAYVEEDHIAHEY 71
>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli
[TaxId: 562]}
Length = 87
Score = 27.8 bits (62), Expect = 1.8
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 600 EDYIQFLC-----FMGHNDASISRLTKSKINCLKNNHLALDLNLPSITIPNLHNNETVTV 654
+ ++F MG + ++ + H D P++ + N +V++
Sbjct: 6 NELLEFPTPFTYKVMGQALPEL----VDQVVEVVQRHAPGDYT-PTVKPSSKGNYHSVSI 60
Query: 655 TRKVTNVGQINSAYEALVEAPYGVNMT 681
T T++ Q+ + YE L + V M
Sbjct: 61 TINATHIEQVETLYEELGKID-IVRMV 86
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 131
Score = 28.5 bits (63), Expect = 1.9
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 639 PSITIPNLHNNETVTVTRKVTNVGQINSAYEALVEAPYGVNMTVEP 684
P + + E VT +TN+ + +GV+M + P
Sbjct: 46 PQYGMTDFKVKEGDEVTVYITNLDMVEDVTHGFCMVNHGVSMEISP 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,449,242
Number of extensions: 160592
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 45
Length of query: 954
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 860
Effective length of database: 1,116,976
Effective search space: 960599360
Effective search space used: 960599360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)