Query 042480
Match_columns 233
No_of_seqs 156 out of 357
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:35:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 1.7E-51 3.7E-56 341.0 16.0 124 99-231 1-125 (154)
2 PF12937 F-box-like: F-box-lik 98.8 4.1E-09 8.9E-14 70.2 3.9 45 4-48 1-45 (47)
3 PF00646 F-box: F-box domain; 98.5 4.6E-08 1E-12 64.8 2.5 44 4-47 3-46 (48)
4 smart00256 FBOX A Receptor for 98.5 2.2E-07 4.7E-12 58.9 4.1 40 7-46 1-40 (41)
5 KOG2997 F-box protein FBX9 [Ge 94.8 0.016 3.4E-07 53.9 1.9 74 4-77 107-186 (366)
6 PF06881 Elongin_A: RNA polyme 93.6 0.074 1.6E-06 41.5 3.3 72 3-80 3-74 (109)
7 PLN03215 ascorbic acid mannose 89.8 0.32 7E-06 46.1 3.5 39 2-40 2-41 (373)
8 KOG3926 F-box proteins [Amino 87.9 0.39 8.4E-06 44.0 2.5 74 4-79 202-278 (332)
9 KOG0274 Cdc4 and related F-box 86.6 0.43 9.4E-06 47.2 2.3 50 4-53 108-157 (537)
10 KOG2120 SCF ubiquitin ligase, 83.4 1.1 2.4E-05 42.0 3.2 43 4-46 98-140 (419)
11 KOG4408 Putative Mg2+ and Co2+ 83.0 0.31 6.8E-06 45.7 -0.5 48 4-51 8-55 (386)
12 PF02018 CBM_4_9: Carbohydrate 73.3 34 0.00074 25.6 8.5 59 153-228 57-115 (131)
13 PF13013 F-box-like_2: F-box-l 66.9 6 0.00013 31.2 2.9 40 4-45 22-61 (109)
14 KOG0281 Beta-TrCP (transducin 56.1 10 0.00022 36.3 2.8 44 4-47 75-122 (499)
15 KOG4114 Cytochrome c oxidase a 35.0 21 0.00045 26.2 1.1 16 5-20 39-54 (73)
16 KOG0418 Ubiquitin-protein liga 28.5 82 0.0018 27.4 3.9 61 136-200 29-93 (200)
17 KOG3233 RNA polymerase III, su 26.6 12 0.00026 34.4 -1.6 44 96-147 137-184 (297)
18 KOG4341 F-box protein containi 21.2 79 0.0017 31.0 2.6 42 6-47 74-115 (483)
19 KOG1702 Nebulin repeat protein 20.5 85 0.0018 27.9 2.5 17 154-170 204-220 (264)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=1.7e-51 Score=341.04 Aligned_cols=124 Identities=42% Similarity=0.751 Sum_probs=116.5
Q ss_pred CCeeEEeeccceeeeeCCCCCceeEEecCCCCcccceEEeeeeEEEEEEEEeccccCCCcceEEEEEEEeCCCcCCCCcc
Q 042480 99 GKKCYMVGARGLCIEWGSTANFWKWTSLSKSRFPEVAELVYFWFFEVNARIETRILSNRTNYAAYLVFKFGKSTDGFGST 178 (233)
Q Consensus 99 G~kcymlsAR~L~I~Wg~~~~yW~W~~~~~srf~evAeL~~V~WleI~G~i~~~~LSp~t~Y~ay~v~kl~~~~~G~~~~ 178 (233)
|+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||||+|+||||||+++++|||+..
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~ 80 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP 80 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceEEEEEEeCCeee-eeEEEEccCCCCCCCCccccCCcEEEEeeeEEEeCCCCC
Q 042480 179 LLASGVYVEGINDE-ERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYFLDN 231 (233)
Q Consensus 179 pv~~~v~~~g~~~~-~~~~v~l~~~~~~~~~p~~r~DgW~EielGEF~~~~g~~ 231 (233)
||+++|+++++... +++.+++ |++|+|||||||+|||+|++++|
T Consensus 81 pv~~~v~~~~~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~ 125 (154)
T PF14299_consen 81 PVEFSVKVPDGEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDD 125 (154)
T ss_pred CEEEEEEeCCCccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCC
Confidence 99999999887653 4566776 48999999999999999998765
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.82 E-value=4.1e-09 Score=70.16 Aligned_cols=45 Identities=29% Similarity=0.551 Sum_probs=40.3
Q ss_pred cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccC
Q 042480 4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFL 48 (233)
Q Consensus 4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fL 48 (233)
+++||+|.+.+|+++++|.|.+++++|||.|+.++.++.+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 468999999999999999999999999999999999999999864
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.54 E-value=4.6e-08 Score=64.79 Aligned_cols=44 Identities=36% Similarity=0.600 Sum_probs=39.0
Q ss_pred cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhcc
Q 042480 4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF 47 (233)
Q Consensus 4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~f 47 (233)
+.+||++++.+|++++++.|.++++.||+.|+.+++++..|.++
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56899999999999999999999999999999999999999875
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.46 E-value=2.2e-07 Score=58.94 Aligned_cols=40 Identities=40% Similarity=0.563 Sum_probs=38.7
Q ss_pred CcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhc
Q 042480 7 LPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEK 46 (233)
Q Consensus 7 LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~ 46 (233)
||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.81 E-value=0.016 Score=53.88 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=54.1
Q ss_pred cccCcHHHHHHHHhcCCh-----HHHHHHhhccHHHHhhhcChhhhhccCCCcchhhhcccCCCCC-CCCCCCHHHHHHh
Q 042480 4 TNALPVECISHIISLTTP-----RDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSS-LSTSLPKKDLYFH 77 (233)
Q Consensus 4 ~~~LPe~cia~ils~tsP-----~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~i~~~~~~~~~-~~~~~SkKely~~ 77 (233)
+..||+|.+-.|+...=| ++.-++|+||+.|+-+|..|.+|+.++=.-|..-+-...+-.. -.-..|-+++|..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~ 186 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE 186 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence 478999999998876554 9999999999999999999999999988766643332221100 0113467788765
No 6
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=93.63 E-value=0.074 Score=41.53 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=57.7
Q ss_pred ccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCcchhhhcccCCCCCCCCCCCHHHHHHhhcc
Q 042480 3 ITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLSTSLPKKDLYFHLCH 80 (233)
Q Consensus 3 ~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~i~~~~~~~~~~~~~~SkKely~~L~~ 80 (233)
-++++|.++|.-||...+|....++-.-|+.+ +-++|.+|.+|+-.||+.-..... + ....|-+++|.++.+
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~-~---~~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK-P---KEPESWRELYEKLKK 74 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc-c---cccchHHHHHHHHHH
Confidence 46789999999999999999999999999765 456999999999999986222222 2 124689999999864
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=89.77 E-value=0.32 Score=46.11 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=35.4
Q ss_pred cccccCcHHHHHHHHhcC-ChHHHHHHhhccHHHHhhhcC
Q 042480 2 DITNALPVECISHIISLT-TPRDACRLAAVSHIFKSAADS 40 (233)
Q Consensus 2 ~~~~~LPe~cia~ils~t-sP~dacr~a~Vs~~fr~aa~s 40 (233)
.--.+||+|.+..|..++ +..|..|+++||+++|+|+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 344689999999999998 789999999999999999986
No 8
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=87.91 E-value=0.39 Score=43.98 Aligned_cols=74 Identities=23% Similarity=0.378 Sum_probs=54.0
Q ss_pred cccCcHHHHHHHHhcCC-hHHHHHHhhccHHHHhhhcChhhhhccCCCcchh--hhcccCCCCCCCCCCCHHHHHHhhc
Q 042480 4 TNALPVECISHIISLTT-PRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKL--IISNSVSSSSLSTSLPKKDLYFHLC 79 (233)
Q Consensus 4 ~~~LPe~cia~ils~ts-P~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~--i~~~~~~~~~~~~~~SkKely~~L~ 79 (233)
|-|||++|+..||-+++ -+|.--+|.|-.++....+.+-+|.+.+-=.|.+ |-...... . .-..--|++|+.|-
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~-k-~~q~dWkqmyf~L~ 278 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILS-K-KGQKDWKQMYFQLR 278 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhc-c-ccchhHHHHHHHHH
Confidence 57999999999999876 7999999999999999999999999887655441 22111100 0 00123678888885
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.60 E-value=0.43 Score=47.21 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=44.6
Q ss_pred cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCcch
Q 042480 4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYK 53 (233)
Q Consensus 4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~ 53 (233)
+..||-+..-.|++++++++.+++++||+.|+..++.+.+|.+.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~ 157 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG 157 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence 46799999999999999999999999999999999999999876665443
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.36 E-value=1.1 Score=41.99 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=40.8
Q ss_pred cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhc
Q 042480 4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEK 46 (233)
Q Consensus 4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~ 46 (233)
++.||+|.+-.|.+.+--.|.-+++.||+.|...|...++|..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 4799999999999999999999999999999999999999943
No 11
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=83.00 E-value=0.31 Score=45.69 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=44.5
Q ss_pred cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCc
Q 042480 4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSD 51 (233)
Q Consensus 4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~d 51 (233)
++.+|.+.+..|++++.++++.+.|+||+.++..++-+..|++++-.+
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~ 55 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKY 55 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccc
Confidence 578899999999999999999999999999999999999999998444
No 12
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=73.34 E-value=34 Score=25.60 Aligned_cols=59 Identities=8% Similarity=-0.104 Sum_probs=38.7
Q ss_pred ccCCCcceEEEEEEEeCCCcCCCCccceEEEEEEeCCeeeeeEEEEccCCCCCCCCccccCCcEEEEeeeEEEeCC
Q 042480 153 ILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYF 228 (233)
Q Consensus 153 ~LSp~t~Y~ay~v~kl~~~~~G~~~~pv~~~v~~~g~~~~~~~~v~l~~~~~~~~~p~~r~DgW~EielGEF~~~~ 228 (233)
.|-||.+|.+.+-+|.... .++.+.+...++.. ......- .....++|-++++ +|....
T Consensus 57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~W~~~s~-~ft~~~ 115 (131)
T PF02018_consen 57 SLKPGKTYTVSFWVKADSG------GTVSVSLRDEDGSP-YNWYTGQ---------TVTITGEWTKYSG-TFTAPS 115 (131)
T ss_dssp EE-TTSEEEEEEEEEESSS------EEEEEEEEESSTTT-EEEEEEE---------EEEETSSEEEEEE-EEEEES
T ss_pred EecCCCEEEEEEEEEeCCC------CEEEEEEEEcCCCC-cEEEEEE---------EEECCCCcEEEEE-EEEECC
Confidence 4669999999999999884 57777777766521 1111100 1233589999995 888773
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=66.88 E-value=6 Score=31.25 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=35.0
Q ss_pred cccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhh
Q 042480 4 TNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWE 45 (233)
Q Consensus 4 ~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~ 45 (233)
+.|||+|.+..|..+-.+.+...+...++++|.+.+. .|.
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~--~~~ 61 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH--IWY 61 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH--HHH
Confidence 6789999999999999999999999999999887443 554
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=56.13 E-value=10 Score=36.27 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=38.0
Q ss_pred cccCc----HHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhcc
Q 042480 4 TNALP----VECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF 47 (233)
Q Consensus 4 ~~~LP----e~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~f 47 (233)
++.|| +.....|+|++...+.|..-.||+.++.+-+...+|.+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkL 122 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKL 122 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 35789 889999999999999999999999999988777777443
No 15
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=35.05 E-value=21 Score=26.17 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=13.9
Q ss_pred ccCcHHHHHHHHhcCC
Q 042480 5 NALPVECISHIISLTT 20 (233)
Q Consensus 5 ~~LPe~cia~ils~ts 20 (233)
.+|||+|++.+=.|+.
T Consensus 39 ~~vPeeC~al~~af~d 54 (73)
T KOG4114|consen 39 KDVPEECIALMKAFLD 54 (73)
T ss_pred ccCcHHHHHHHHHHHH
Confidence 4699999999988875
No 16
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.54 E-value=82 Score=27.44 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=40.2
Q ss_pred EEeeeeEEEEEEEEeccccCCCcceEE-EEEEEeC-CCcCCCCccceEEEEEE--eCCeeeeeEEEEcc
Q 042480 136 ELVYFWFFEVNARIETRILSNRTNYAA-YLVFKFG-KSTDGFGSTLLASGVYV--EGINDEERQGLFLD 200 (233)
Q Consensus 136 eL~~V~WleI~G~i~~~~LSp~t~Y~a-y~v~kl~-~~~~G~~~~pv~~~v~~--~g~~~~~~~~v~l~ 200 (233)
|+.+-.+-+|+|.|.-- |+|-|+- +|++.++ +..|=|.-+-|.|.-++ |+-.. ++..+|||
T Consensus 29 e~vn~~~~~ikG~I~GP---~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs-~tGaICLD 93 (200)
T KOG0418|consen 29 EMVNENLKEIKGHIAGP---EDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSS-QTGAICLD 93 (200)
T ss_pred EEccCChhhceeEecCC---CCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCc-ccccchhh
Confidence 44455677899999875 6888863 5665553 44688885556666555 44333 66778996
No 17
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=26.61 E-value=12 Score=34.36 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=30.2
Q ss_pred ecCCCeeEEeec--cceeeeeCCCCCceeEEecC--CCCcccceEEeeeeEEEEEE
Q 042480 96 KETGKKCYMVGA--RGLCIEWGSTANFWKWTSLS--KSRFPEVAELVYFWFFEVNA 147 (233)
Q Consensus 96 k~tG~kcymlsA--R~L~I~Wg~~~~yW~W~~~~--~srf~evAeL~~V~WleI~G 147 (233)
+.+++|||||.- -..+||.|. |.+-. |+.|.| -|+++||.=+.-
T Consensus 137 ~n~~~KvYmLy~leP~~elTGG~------WytDqdlDvEfIe--~L~~~c~~fl~~ 184 (297)
T KOG3233|consen 137 KNSRKKVYMLYDLEPDSELTGGT------WYTDQDLDVEFIE--VLKQICVRFLES 184 (297)
T ss_pred cCCCceEEEEecccccccccCCc------ccccccccHHHHH--HHHHHHHHHHHh
Confidence 568899999987 456788775 66544 455554 488888844333
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=21.15 E-value=79 Score=31.02 Aligned_cols=42 Identities=21% Similarity=0.488 Sum_probs=39.4
Q ss_pred cCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhcc
Q 042480 6 ALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF 47 (233)
Q Consensus 6 ~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~f 47 (233)
.||.+..-.|.|++.-.-.||.|.+++.|-.-|-+-.-|.+.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~i 115 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHI 115 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceee
Confidence 689999999999999999999999999999999999999765
No 19
>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]
Probab=20.45 E-value=85 Score=27.94 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=11.9
Q ss_pred cCCCcceEEEEEEEeCC
Q 042480 154 LSNRTNYAAYLVFKFGK 170 (233)
Q Consensus 154 LSp~t~Y~ay~v~kl~~ 170 (233)
-++|.+|.|++-|.-.|
T Consensus 204 ~~~gktyra~ydysaqd 220 (264)
T KOG1702|consen 204 SCTGKTYRAFYDYSAQD 220 (264)
T ss_pred CCCCccchhhccCcccC
Confidence 45788898877665444
Done!