Query 042480
Match_columns 233
No_of_seqs 156 out of 357
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:12:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 1.9E-09 6.4E-14 72.3 4.5 45 3-47 8-52 (53)
2 3l2o_B F-box only protein 4; s 98.8 3.1E-09 1.1E-13 96.0 5.7 78 2-79 3-93 (312)
3 2e31_A FBS1, F-box only protei 98.1 2.2E-06 7.5E-11 77.1 4.5 81 2-87 49-130 (297)
4 2ovr_B FBW7, F-BOX/WD repeat p 98.1 2E-06 6.7E-11 77.1 4.1 48 2-49 17-64 (445)
5 3v7d_B Cell division control p 97.8 7.9E-06 2.7E-10 73.1 3.0 46 3-48 14-60 (464)
6 1p22_A F-BOX/WD-repeat protein 97.8 6.8E-06 2.3E-10 73.7 1.9 49 3-51 10-62 (435)
7 2ast_B S-phase kinase-associat 97.1 0.00027 9.3E-09 61.2 3.7 45 3-47 8-52 (336)
8 2p1m_B Transport inhibitor res 95.7 0.0067 2.3E-07 56.3 3.8 36 2-37 4-40 (594)
9 3ogk_B Coronatine-insensitive 94.3 0.024 8.1E-07 52.6 3.2 33 5-37 14-47 (592)
10 4hfx_A Transcription elongatio 90.5 0.1 3.5E-06 39.4 1.8 65 6-80 12-76 (97)
11 1dyo_A Endo-1,4-beta-xylanase 82.1 6.7 0.00023 31.0 8.4 69 149-228 60-128 (160)
12 2w5f_A Endo-1,4-beta-xylanase 41.9 56 0.0019 30.8 7.1 66 151-228 77-142 (540)
13 3b83_A Ten-D3; beta sheet, com 26.3 1E+02 0.0035 21.1 4.8 37 149-189 57-93 (100)
14 3tes_A Tencon; fibronectin typ 25.0 94 0.0032 21.4 4.3 36 149-188 57-92 (98)
15 3qht_C Monobody YSMB-1; fibron 23.4 54 0.0019 22.5 2.7 35 149-183 60-94 (97)
16 2qbw_A PDZ-fibronectin fusion 22.5 1.2E+02 0.0039 23.7 4.9 33 151-184 161-193 (195)
17 2cum_A Tenascin-X; hexabrachio 20.4 1.8E+02 0.0063 20.0 5.2 35 149-187 61-95 (105)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.87 E-value=1.9e-09 Score=72.33 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=40.1
Q ss_pred ccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhcc
Q 042480 3 ITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF 47 (233)
Q Consensus 3 ~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~f 47 (233)
.+++||+|++.+|+++++|+|.+++++|||.|+.++.++.+|+++
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 468999999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.82 E-value=3.1e-09 Score=96.01 Aligned_cols=78 Identities=21% Similarity=0.419 Sum_probs=62.6
Q ss_pred cccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCcch---hhhcccCCCC----------CCCCC
Q 042480 2 DITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYK---LIISNSVSSS----------SLSTS 68 (233)
Q Consensus 2 ~~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~---~i~~~~~~~~----------~~~~~ 68 (233)
|++++||.+++.+|+||++|+|+||+|+||+.||.+|+++.+|+.||-.|++ +|-..+.+.. ....+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~ 82 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF 82 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence 6789999999999999999999999999999999999999999999987644 4444332211 00124
Q ss_pred CCHHHHHHhhc
Q 042480 69 LPKKDLYFHLC 79 (233)
Q Consensus 69 ~SkKely~~L~ 79 (233)
..++.+|.+=|
T Consensus 83 ~~~~~~y~~~~ 93 (312)
T 3l2o_B 83 FDYMAVYRMCC 93 (312)
T ss_dssp CCHHHHHHHHC
T ss_pred ccHHHHHHhcC
Confidence 56899999988
No 3
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.08 E-value=2.2e-06 Score=77.11 Aligned_cols=81 Identities=11% Similarity=0.162 Sum_probs=60.3
Q ss_pred cccccCcHHHHHHHHhcCChHHHH-HHhhccHHHHhhhcChhhhhccCCCcchhhhcccCCCCCCCCCCCHHHHHHhhcc
Q 042480 2 DITNALPVECISHIISLTTPRDAC-RLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLSTSLPKKDLYFHLCH 80 (233)
Q Consensus 2 ~~~~~LPe~cia~ils~tsP~dac-r~a~Vs~~fr~aa~sD~vW~~fLP~dy~~i~~~~~~~~~~~~~~SkKely~~L~~ 80 (233)
..++.||+|.+..||+++.|++.+ |+++|||.||..++++.+|++.+.+. .+......+ .+..+-|.+|..--.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~~---~~~~~Wk~~y~~~~~ 123 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSAD---EERDHWQQFYFLSKR 123 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC--------CCSCHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--CcccccccC---CCCCChhhhheheec
Confidence 456899999999999999999999 99999999999999999999988765 121111101 023578999987433
Q ss_pred CCeEecC
Q 042480 81 YPVFINN 87 (233)
Q Consensus 81 ~~vlld~ 87 (233)
.-+||.+
T Consensus 124 gRNLL~N 130 (297)
T 2e31_A 124 RRNLLRN 130 (297)
T ss_dssp CCCCSSC
T ss_pred ccceeec
Confidence 3455544
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.07 E-value=2e-06 Score=77.12 Aligned_cols=48 Identities=23% Similarity=0.435 Sum_probs=45.1
Q ss_pred cccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCC
Q 042480 2 DITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLP 49 (233)
Q Consensus 2 ~~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP 49 (233)
..++.||++++.+|++|++|+|.|++++||+.|+.+++++.+|++++-
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 457899999999999999999999999999999999999999998764
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.81 E-value=7.9e-06 Score=73.06 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=43.0
Q ss_pred ccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcC-hhhhhccC
Q 042480 3 ITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADS-DLVWEKFL 48 (233)
Q Consensus 3 ~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~s-D~vW~~fL 48 (233)
.+..||+|++.+|++|++|+|.|++++||+.|+.++++ +.+|++++
T Consensus 14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35789999999999999999999999999999999988 99999876
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.77 E-value=6.8e-06 Score=73.67 Aligned_cols=49 Identities=18% Similarity=0.424 Sum_probs=45.2
Q ss_pred ccccCcHH----HHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCc
Q 042480 3 ITNALPVE----CISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSD 51 (233)
Q Consensus 3 ~~~~LPe~----cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~d 51 (233)
.+..||++ ++.+|++|++|+|.|++++||+.|+..++++.+|++++.+.
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 45789999 99999999999999999999999999999999999887654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.11 E-value=0.00027 Score=61.16 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=41.0
Q ss_pred ccccCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhcc
Q 042480 3 ITNALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKF 47 (233)
Q Consensus 3 ~~~~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~f 47 (233)
.+++||+|++.+|+++++++|.++++.||+.|+.++.+...|.+.
T Consensus 8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 468999999999999999999999999999999999877778653
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.65 E-value=0.0067 Score=56.27 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=29.5
Q ss_pred cccccCcHHHHHHHHhcCC-hHHHHHHhhccHHHHhh
Q 042480 2 DITNALPVECISHIISLTT-PRDACRLAAVSHIFKSA 37 (233)
Q Consensus 2 ~~~~~LPe~cia~ils~ts-P~dacr~a~Vs~~fr~a 37 (233)
..+++||+|++.+|++|++ ++|++++|.||+.|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4578999999999999999 99999999999999988
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.26 E-value=0.024 Score=52.64 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=31.3
Q ss_pred ccCcHHHHHHHHhcC-ChHHHHHHhhccHHHHhh
Q 042480 5 NALPVECISHIISLT-TPRDACRLAAVSHIFKSA 37 (233)
Q Consensus 5 ~~LPe~cia~ils~t-sP~dacr~a~Vs~~fr~a 37 (233)
.+||++++.+|++|+ +++|+++++.||+.|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 379999999999999 899999999999999988
No 10
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=90.52 E-value=0.1 Score=39.41 Aligned_cols=65 Identities=17% Similarity=0.407 Sum_probs=40.1
Q ss_pred cCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcChhhhhccCCCcchhhhcccCCCCCCCCCCCHHHHHHhhcc
Q 042480 6 ALPVECISHIISLTTPRDACRLAAVSHIFKSAADSDLVWEKFLPSDYKLIISNSVSSSSLSTSLPKKDLYFHLCH 80 (233)
Q Consensus 6 ~LPe~cia~ils~tsP~dacr~a~Vs~~fr~aa~sD~vW~~fLP~dy~~i~~~~~~~~~~~~~~SkKely~~L~~ 80 (233)
..|-+.+.-||...||....++-.-|+.+ .-++|-+|.+++-+||..-- + ....|-+++|.+|.+
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p---~e~esWRelY~rl~~ 76 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----P---EEYESWREMYLRLQD 76 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----C---CSSSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----C---CCCCCHHHHHHHHHH
Confidence 46888999999999999999999999966 57899999999999998432 1 124699999999975
No 11
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=82.07 E-value=6.7 Score=30.97 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=41.1
Q ss_pred EeccccCCCcceEEEEEEEeCCCcCCCCccceEEEEEEeCCeeeeeEEEEccCCCCCCCCccccCCcEEEEeeeEEEeCC
Q 042480 149 IETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYF 228 (233)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~G~~~~pv~~~v~~~g~~~~~~~~v~l~~~~~~~~~p~~r~DgW~EielGEF~~~~ 228 (233)
+....|.||++|.+..-+|+.++. ....+.+++...+... ..+...+. .-....++|.+|+-|.|....
T Consensus 60 ~t~~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g-~~~y~~i~-------~~~~~~~~W~~L~G~~ft~~~ 128 (160)
T 1dyo_A 60 LNPRTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSG-TQRYDTID-------MKTVGPNQWVHLYNPQYRIPS 128 (160)
T ss_dssp ECTTTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTS-CEEEEEEE-------EEEECSSCCEEEEEEEEECCT
T ss_pred cchhhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCC-CEEEEEEe-------eEEEcCCccEEEECcEEEeCC
Confidence 333468999999999999998743 2234444444423221 11222221 002346899999988888754
No 12
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=41.91 E-value=56 Score=30.81 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=37.4
Q ss_pred ccccCCCcceEEEEEEEeCCCcCCCCccceEEEEEEeCCeeeeeEEEEccCCCCCCCCccccCCcEEEEeeeEEEeCC
Q 042480 151 TRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGINDEERQGLFLDPSRNTPQLFHDRRDGWMEIEMADKCNYF 228 (233)
Q Consensus 151 ~~~LSp~t~Y~ay~v~kl~~~~~G~~~~pv~~~v~~~g~~~~~~~~v~l~~~~~~~~~p~~r~DgW~EielGEF~~~~ 228 (233)
+..|.||++|....-+|. + |=...++.+++...++.........+. ......++|.+++ |.|....
T Consensus 77 ~~~l~~G~~Y~fSawVk~-~---g~~~~~v~l~l~~~d~~~~~~~~~~i~-------~~~~~~g~Wt~L~-g~ft~p~ 142 (540)
T 2w5f_A 77 GFYLDGGVEYKYSVFVKH-N---GTGTETFKLSVSYLDSETEEENKEVIA-------TKDVVAGEWTEIS-AKYKAPK 142 (540)
T ss_dssp TTTCCTTCEEEEEEEEEC-C---SSSEEEEEEEEEEEETTTCCEEEEEEE-------EEEEETTCCEEEE-EEEECCT
T ss_pred cceecCCCEEEEEEEEEe-C---CCCCceEEEEEEEecCCCCCceEEEee-------EEEEeCCeeEEEE-eEEEecC
Confidence 557899999999999995 3 212345555555422211011111121 0123479999999 7887643
No 13
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=26.29 E-value=1e+02 Score=21.13 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=25.1
Q ss_pred EeccccCCCcceEEEEEEEeCCCcCCCCccceEEEEEEeCC
Q 042480 149 IETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEGI 189 (233)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~G~~~~pv~~~v~~~g~ 189 (233)
+...-|.|+|.|.+.+.-.-.. |.. .|...+..+.-+
T Consensus 57 ~~i~~L~p~t~Y~~~V~A~n~~---g~s-~p~~~~~~~~~~ 93 (100)
T 3b83_A 57 LTLTNLEPNTTYEIRIVARNGQ---QYS-PPVSTTFTTGSL 93 (100)
T ss_dssp EEECSCCTTCEEEEEEEEEETT---EEC-CCEEEEEECCCC
T ss_pred EEECCCCCCCEEEEEEEEEeCC---CCC-CCEEEEEEEEee
Confidence 3345699999999877654433 665 788777776543
No 14
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=25.04 E-value=94 Score=21.44 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=25.1
Q ss_pred EeccccCCCcceEEEEEEEeCCCcCCCCccceEEEEEEeC
Q 042480 149 IETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVEG 188 (233)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~G~~~~pv~~~v~~~g 188 (233)
+.-.-|.|+|.|.+.+.-.-.. |- +.|+...+...|
T Consensus 57 ~~l~gL~P~t~Y~~~V~A~~~~---g~-S~p~~~~~~~~~ 92 (98)
T 3tes_A 57 YDLTGLKPGTEYTVSIYGVKGG---HR-SNPLSAEFTTGG 92 (98)
T ss_dssp EEECSCCTTCEEEEEEEEEETT---EE-BCCEEEEEECSS
T ss_pred EEECCCCCCCEEEEEEEEEeCC---cc-cCCEEEEEEcCc
Confidence 3445699999999877655443 43 478888888744
No 15
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=23.41 E-value=54 Score=22.46 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=20.1
Q ss_pred EeccccCCCcceEEEEEEEeCCCcCCCCccceEEE
Q 042480 149 IETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASG 183 (233)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~G~~~~pv~~~ 183 (233)
+.-.-|.|+|.|.+.+.-.-..+.--....|+.+.
T Consensus 60 ~~l~~L~p~t~Y~v~V~A~~~~G~gp~ss~p~~~~ 94 (97)
T 3qht_C 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94 (97)
T ss_dssp EEECSCCTTCEEEEEEEEEEEETTEEEECSCEEEE
T ss_pred EEeCCCCCCCEEEEEEEEEeCCccCCCCCCCEEEe
Confidence 34456999999988766544432211223555443
No 16
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=22.50 E-value=1.2e+02 Score=23.66 Aligned_cols=33 Identities=6% Similarity=-0.077 Sum_probs=21.2
Q ss_pred ccccCCCcceEEEEEEEeCCCcCCCCccceEEEE
Q 042480 151 TRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGV 184 (233)
Q Consensus 151 ~~~LSp~t~Y~ay~v~kl~~~~~G~~~~pv~~~v 184 (233)
-.-|.|+|.|.+.+.-.-.. .+|=.+.|+.++.
T Consensus 161 l~gL~p~t~Y~~~V~A~~~~-G~g~~S~~v~~~~ 193 (195)
T 2qbw_A 161 ISGLKPGVDYTITVYAYSDY-YGSHHYSPISINY 193 (195)
T ss_dssp ECSCCTTCEEEEEEEEESST-TSSCBCCCEEEEE
T ss_pred eCCCCCCCEEEEEEEEEeCC-ccCCCCCCEEEEe
Confidence 34589999999866655444 3343356776654
No 17
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=20.41 E-value=1.8e+02 Score=20.01 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=22.6
Q ss_pred EeccccCCCcceEEEEEEEeCCCcCCCCccceEEEEEEe
Q 042480 149 IETRILSNRTNYAAYLVFKFGKSTDGFGSTLLASGVYVE 187 (233)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~G~~~~pv~~~v~~~ 187 (233)
+.-.-|.|+|.|.+.+.-.-.. |-. .|+...+...
T Consensus 61 ~~l~~L~p~t~Y~~~V~A~~~~---g~s-~~~~~~~~T~ 95 (105)
T 2cum_A 61 HQLLGLFPSTSYNARLQAMWGQ---SLL-PPVSTSFTTG 95 (105)
T ss_dssp EEECSCCTTCEEEEEEEEEBTT---BCC-CCEEEEEECC
T ss_pred EEECCCCCCCEEEEEEEEEeCC---ccc-CCEEEEEEeC
Confidence 3444699999999987665432 433 5666666553
Done!