BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042484
(620 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 335 bits (859), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 222/632 (35%), Positives = 327/632 (51%), Gaps = 88/632 (13%)
Query: 49 TTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWK 108
TT SW+FLG P ++ +++ +I++G LDTG+W ES SF DEGF P P KWK
Sbjct: 1 TTRSWDFLGF-------PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 109 GICQNDKDARFHCNRYFNQDYAVHKG-PLN-SSFYSARDKNGHGSHTLSRAGGNFVAGAS 166
G C+ + F CNR + H G P++ RD NGHG+HT S A G V+ A+
Sbjct: 54 GTCETSNN--FRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQAN 111
Query: 167 VFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----- 221
++G G GTA+GG P AR+A YK CW+ GC D DI+AA+D AI DGVD++S+S+
Sbjct: 112 LYGLGLGTARGGVPLARIAAYKVCWN--DGCSDTDILAAYDDAIADGVDIISLSVGGANP 169
Query: 222 -------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVV 274
+AIGSFHAV+ GI+ S GN G T + +P + V ASTMDR V
Sbjct: 170 RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQ 229
Query: 275 LGNNKRFKLIS-----------ERAKGLP------SDKLFTFIRTLDPKKVKGKILVCLN 317
+GN + F+ +S + +P S F ++++P +KGKI+VC
Sbjct: 230 IGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEA 289
Query: 318 VRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT-RHP 376
E + +L GAA +++ + D + LP+SV+ ND L + ++ R P
Sbjct: 290 SFGPHEFFK-SLDGAAGVLMTS----NTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSP 344
Query: 377 VGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK------------------------ 412
I + TT A AP + + SS+GP T +++K
Sbjct: 345 GATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIR 403
Query: 413 RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASF 472
R FN ISGTSMS P+I+GIA K +P WSPAA++SA+MTTA+ ++A F
Sbjct: 404 RNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASP--------MNARF 455
Query: 473 TEATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKN 532
F+YG+GHV P A+ PGLVY +DY+ FLC GYN + + + + N
Sbjct: 456 NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGN 515
Query: 533 AIILVNFNYPSITV---PKLSGSITVTRRVKNVG-SPGTYQARVKTPQGVSVTMAPKSLK 588
+ + NYPS + P + + R + +V TY+A + PQG+++++ P L
Sbjct: 516 TGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLS 575
Query: 589 FINVGEEKSFKVNIKAKNASVTKDYVFGELIW 620
F +G+ KSF + ++ S+ V L+W
Sbjct: 576 FNGLGDRKSFTLTVR---GSIKGFVVSASLVW 604
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 273 bits (698), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 202/632 (31%), Positives = 317/632 (50%), Gaps = 98/632 (15%)
Query: 49 TTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWK 108
TTH+ +FL L P + +W + G+D+I+ LD+G+W ES SF D+G IP +WK
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 109 GICQNDKDARFH---CNR------YFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGG 159
GIC+ +F+ CNR YFN+ + +N + SARD +GHG+H S G
Sbjct: 56 GICK--PGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAG 113
Query: 160 NFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSV 219
NF G S FG+ GTA+G +P+AR+A YK ++ G + D+IAA D A+ DGVDM+S+
Sbjct: 114 NFAKGVSHFGYAPGTARGVAPRARLAVYKFSFN--EGTFTSDLIAAMDQAVADGVDMISI 171
Query: 220 SL-----------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRD 268
S ++I SF A+ G++V S GN G +L N +P + V + DR
Sbjct: 172 SYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRT 231
Query: 269 LSNYVVLGNNKRFKLISE-RAKGLPSDKLFTFIRTLDP----------KKVKGKILVCLN 317
+ + LGN + + S A+ D + +TL + + I++C +
Sbjct: 232 FAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENTIVICDD 291
Query: 318 -------VRSVDEG-LQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNL- 368
+R + L+AA+ + D + F N P V+ +G +
Sbjct: 292 NGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPN---------PGVVVNKKEGKQVIN 342
Query: 369 FFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIH--------------------ITP 408
+ + P I T KPAP +AA S++GP P
Sbjct: 343 YVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPP 402
Query: 409 EILKRRIPFNSI--------SGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQ 460
+ I N + SGTSM+ P+ +GIA + K HP+WSP+A++SA+MTTA
Sbjct: 403 NVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPL 462
Query: 461 DNKKQQILDASFTE-ATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVI- 518
DN ++ I D+ + ATP GAGHV PN A+DPGLVY T DY+N LC+L + +
Sbjct: 463 DNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFK 522
Query: 519 SLFSTNCTYTCPKNAIILVNFNYPS-ITVPKLSGSITV-----TRRVKNVGS-PGTYQAR 571
++ ++ ++ C + + NYPS I + + G+ T+ R V NVG TY+A+
Sbjct: 523 TIARSSASHNCSNPS---ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAK 579
Query: 572 VKTPQGVSVTMAPKSLKFINVGEEKSFKVNIK 603
+K P+ +++++P+ L F N E++S+ + I+
Sbjct: 580 LKAPKNSTISVSPQILVFKNKNEKQSYTLTIR 611
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 25/135 (18%)
Query: 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIA 204
D NGHG+H S A G A G KG +P A++ G K +G G DII
Sbjct: 176 DDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVL-NGQGSGSISDIIN 227
Query: 205 AFDMAIHD----GVDMLSVSLVAIGSF-----------HAVQHGIVVVCSDGNEGLVDVT 249
D A+ + G+ ++++SL + S +A G+VVV + GN G T
Sbjct: 228 GVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYT 287
Query: 250 LQN--AAPRQIVVGA 262
+ + AA + I VGA
Sbjct: 288 VGSPAAASKVITVGA 302
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEAT 476
+ + GT+M+ P+++GIA L HP W+P V++A++ TA K +I D
Sbjct: 352 YTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIV--KPDEIAD------- 402
Query: 477 PFSYGAGHV 485
+YGAG V
Sbjct: 403 -IAYGAGRV 410
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 406 ITPEILKRRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
IT N+ISGTSM+ P+++G+A L +P+ SPA V + + T AT
Sbjct: 206 ITSSWYTSNSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRAT 258
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ ++SGTSM+ P+++G A L HP+W+ V+S++ TAT
Sbjct: 205 YGALSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTAT 246
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ ++SGT+M+ P+++G A L HP+W+ V+S++ TAT
Sbjct: 205 YGALSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTAT 246
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 419 SISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+++GTSM+ P+++G+A L +P +PA+V SAI+ ATT
Sbjct: 217 TLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATT 257
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDN 462
+ S++GTSM+ P+++G+A L K +P WS +++ + TAT N
Sbjct: 208 YASLNGTSMATPHVAGVAALVKQKNPSWSNVQIRNHLKNTATGLGN 253
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 32/154 (20%)
Query: 127 QDYAVHKGPLNSSFYSARDKNGHGSHTLSRA---GGNFVAGASVFGFGKGTAKGGSPKAR 183
+D+ P+N+S D+NGHG+H A GG+ AG ++G +P A
Sbjct: 52 KDFTGATTPINNS---CTDRNGHGTHVAGTALADGGSDQAG--IYGV--------APDAD 98
Query: 184 VAGYKACWDGMGGCYDCDIIAAF----DMAIHDGVDML---------SVSLVAIGSFHAV 230
+ YK D G Y DI AA D A G + + SL++ +A
Sbjct: 99 LWAYKVLLD-SGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVNYAY 157
Query: 231 QHGIVVVCSDGNEGLVDVTLQ--NAAPRQIVVGA 262
G+++V + GN G T+ A P I V A
Sbjct: 158 SKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA 191
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNK 463
+N+ISGTSM+ P++SG+A +P S ++S + A + D K
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIK 289
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 32/154 (20%)
Query: 127 QDYAVHKGPLNSSFYSARDKNGHGSHTLSRA---GGNFVAGASVFGFGKGTAKGGSPKAR 183
+D+ P+N+S D+NGHG+H A GG+ AG ++G +P A
Sbjct: 52 KDFTGATTPINNS---CTDRNGHGTHVAGTALADGGSDQAG--IYGV--------APDAD 98
Query: 184 VAGYKACWDGMGGCYDCDIIAAF----DMAIHDGVDML---------SVSLVAIGSFHAV 230
+ YK D G Y DI AA D A G + + SL++ +A
Sbjct: 99 LWAYKVLLD-SGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVNYAY 157
Query: 231 QHGIVVVCSDGNEGLVDVTLQ--NAAPRQIVVGA 262
G+++V + GN G T+ A P I V A
Sbjct: 158 SKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA 191
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNK 463
+N+ISGT M+ P++SG+A +P S ++S + A + D K
Sbjct: 243 YNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIK 289
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ S++GTSM+ P+++G A L K +P WS +++ + TAT+
Sbjct: 208 YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATS 250
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNK 463
+ + SGTSM+ P+++G A L HP+W+ V+S++ T T N
Sbjct: 205 YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS 251
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + SGTSM+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAKSGTSMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLENTTT 255
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ S++GTSM+ P+++G A L K +P WS +++ + TAT+
Sbjct: 208 YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATS 250
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ S++GTSM+ P+++G A L K +P WS +++ + TAT+
Sbjct: 208 YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATS 250
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ + SGTSM+ P+++G A L HP+W+ V+S++ T T
Sbjct: 214 YGAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ + SGTSM+ P+++G A L HP+W+ V+S++ T T
Sbjct: 214 YGAYSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ S++GTSM+ P+++G A L K +P WS +++ + TAT+
Sbjct: 208 YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATS 250
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ S++GTSM+ P+++G A L K +P WS +++ + TAT+
Sbjct: 208 YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATS 250
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ + SGTSM+ P+++G A L HP+W+ V+S++ T T
Sbjct: 205 YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ + SGTSM+ P+++G A L HP+W+ V+S++ T T
Sbjct: 214 YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ + SGTSM+ P+++G A L HP+W+ V+S++ T T
Sbjct: 214 YGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 255
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + +GTSM+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLQNTTT 255
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + +GTSM+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLQNTTT 255
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + +GTSM+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLENTTT 255
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + +GTSM+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLENTTT 255
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + +GTSM+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLENTTT 255
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + SGT M+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAYSGTXMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLENTTT 255
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + SGT M+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAYSGTXMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLENTTT 255
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ S++GT M+ P+++G A L K +P WS +++ + TAT+
Sbjct: 208 YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATS 250
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ + SGT+M+ P+++G A L HP+W+ V+S++ T T
Sbjct: 205 YGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ S++GT M+ P+++G A L K +P WS +++ + TAT+
Sbjct: 208 YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATS 250
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ + SGT+M+ P+++G A L HP+W+ V+S++ T T
Sbjct: 205 YGAKSGTAMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + SGT M+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAKSGTXMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLENTTT 255
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 137 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 196
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGS--------FHAVQH 232
A G + G G D D IIA A D +++S+SL A
Sbjct: 197 AIGIEQAILGPDGVADKDGDGIIAGDPDA--DAAEVISMSLGGPADDSYLYDMIIQAYNA 254
Query: 233 GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
GIV+V + GNEG + A P I VGA + +++++
Sbjct: 255 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 294
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ S++GT M+ P+++G A L K +P WS +++ + TAT+
Sbjct: 208 YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATS 250
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ + SGT M+ P+++G A L HP+W+ V+S++ T T
Sbjct: 205 YGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 246
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459
+ S++GT M+ P+++G A L K +P WS +++ + TAT+
Sbjct: 208 YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATS 250
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ + +GTSM+ P+++G A L HP W+ A V+ + +TAT
Sbjct: 214 YGAYNGTSMATPHVAGAAALILSKHPTWTNAQVRDRLESTAT 255
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 421 SGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTA 457
+GTSM+ P++SG+A L HP+ S + V++A+ TA
Sbjct: 366 NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ + SGT M+ P+++G A L HP+W+ V+S++ T T
Sbjct: 202 YGAKSGTXMASPHVAGAAALILSKHPNWTNTQVRSSLENTTT 243
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ +++GTSM+ P+++G A L HP+ S + V++ + +TAT
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 255
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ +++GTSM+ P+++G A L HP+ S + V++ + +TAT
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 255
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ +++GTSM+ P+++G A L HP+ S + V++ + +TAT
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ +++GTSM+ P+++G A L HP+ S + V++ + +TAT
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ +++GTSM+ P+++G A L HP+ S + V++ + +TAT
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ +++GTSM+ P+++G A L HP+ S + V++ + +TAT
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + +GT M+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTXMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLENTTT 255
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + +GT M+ P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTXMASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLENTTT 255
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 137 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 196
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGS--------FHAVQH 232
A G + G G D D IIA D +++S+SL A
Sbjct: 197 AIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA 254
Query: 233 GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
GIV+V + GNEG + A P I VGA + +++++
Sbjct: 255 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 294
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 137 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 196
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGS--------FHAVQH 232
A G + G G D D IIA D +++S+SL A
Sbjct: 197 AIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA 254
Query: 233 GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
GIV+V + GNEG + A P I VGA + +++++
Sbjct: 255 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 294
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 134 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 193
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGS--------FHAVQH 232
A G + G G D D IIA D +++S+SL A
Sbjct: 194 AIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA 251
Query: 233 GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
GIV+V + GNEG + A P I VGA + +++++
Sbjct: 252 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 291
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 417 FNSISGTSMSGPYISGIAGLPK----ILHPDWSPAA----VQSAIMTTATTQDNKKQQIL 468
+ +SGTSMS P ++GI GL + +PD +P+ + +M++AT ++ ++
Sbjct: 409 YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK-- 466
Query: 469 DASFTEATPFSYGAGHVQPNLA 490
A F +P GAG V A
Sbjct: 467 -AYF---SPRQQGAGAVDAKKA 484
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNK 463
+ + +GT M+ P+++G A L HP W+ A V+ + +TAT N
Sbjct: 214 YGAYNGTXMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 396 AALSSKGPIH--ITPEI-LKRRIPFN---SISGTSMSGPYISGIAGLPKILHPDWSPAAV 449
A+ SS GP + P + ++ +P N + +GTS + P+++G A L HP+W+ V
Sbjct: 187 ASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSXASPHVAGAAALILSKHPNWTNTQV 246
Query: 450 QSAIMTTAT 458
+S++ T T
Sbjct: 247 RSSLENTTT 255
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNK 463
+ + +GT M+ P+++G A L HP W+ A V+ + +TAT N
Sbjct: 214 YGAYNGTCMATPHVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 57 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 116
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGS--------FHAVQH 232
A G + G G D D IIA D +++S+SL A
Sbjct: 117 AIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA 174
Query: 233 GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
GIV+V + GNEG + A P I VGA + +++++
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 214
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 57 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 116
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGS--------FHAVQH 232
A G + G G D D IIA D +++S+SL A
Sbjct: 117 AIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA 174
Query: 233 GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
GIV+V + GNEG + A P I VGA + +++++
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 214
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 57 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 116
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGS--------FHAVQH 232
A G + G G D D IIA D +++S+SL A
Sbjct: 117 AIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA 174
Query: 233 GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
GIV+V + GNEG + A P I VGA + +++++
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 214
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 59 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 118
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGS--------FHAVQH 232
A G + G G D D IIA D +++S+SL A
Sbjct: 119 AIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA 176
Query: 233 GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
GIV+V + GNEG + A P I VGA + +++++
Sbjct: 177 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 216
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ +++GT M+ P+++G A L HP+ S + V++ + +TAT
Sbjct: 213 YATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254
>pdb|3P4I|A Chain A, Crystal Structure Of Acetate Kinase From Mycobacterium
Avium
pdb|3P4I|B Chain B, Crystal Structure Of Acetate Kinase From Mycobacterium
Avium
pdb|4IZ9|A Chain A, Crystal Structure Of An Acetate Kinase From Mycobacterium
Avium Bound To An Unknown Acid-apcpp Conjugate And
Manganese
Length = 392
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 198 YDCDIIAAFDMAIHDGVDMLSVSLVAIGSFHAVQHG 233
+D + AFDM DGVD+ + LVA+G H V HG
Sbjct: 56 HDAALRRAFDMLAGDGVDLNTAGLVAVG--HRVVHG 89
>pdb|3R9P|A Chain A, Crystal Structure Of Acka From Mycobacterium
Paratuberculosis Atcc Baa-968 K-10
pdb|3R9P|B Chain B, Crystal Structure Of Acka From Mycobacterium
Paratuberculosis Atcc Baa-968 K-10
Length = 391
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 198 YDCDIIAAFDMAIHDGVDMLSVSLVAIGSFHAVQHG 233
+D + AFDM DGVD+ + LVA+G H V HG
Sbjct: 55 HDAALRRAFDMLAGDGVDLNTAGLVAVG--HRVVHG 88
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 68 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 127
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGS--------FHAVQH 232
A G + G G D D IIA D +++S+SL A
Sbjct: 128 AIGIEQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA 185
Query: 233 GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
GIV+V + GNEG + A P I VGA + +++++
Sbjct: 186 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 225
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458
+ S++GTSM+ P+++G A L +P S + V++ + +TAT
Sbjct: 213 YTSLNGTSMASPHVAGAAALILSKYPTLSASQVRNRLSSTAT 254
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 22/160 (13%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 68 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 127
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGS--------FHAVQH 232
A G G G D D IIA D +++S+SL A
Sbjct: 128 AIGIAQAILGPDGVADKDGDGIIAGD--PDDDAAEVISMSLGGPADDSYLYDMIIQAYNA 185
Query: 233 GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
GIV+V + GNEG + A P I VGA + +++++
Sbjct: 186 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 225
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 18/158 (11%)
Query: 133 KGPLNSSFYSARDKNGHGSHTLSRAGG--------NFVAGASVFGFGKGTAKGGSPKARV 184
+G +++ D+NGHG+H + G ++ A+G + +
Sbjct: 137 RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDI 196
Query: 185 A-GYKACWDGMGGCYDCD---IIAAFDMAIHDGVDMLSVSLVAIGSF------HAVQHGI 234
A G + G G D D IIA V +S+ A S+ A GI
Sbjct: 197 AIGIEQAILGPDGVADKDGDGIIAGDPDDAAAEVISMSLGGPADDSYLYDMIIQAYNAGI 256
Query: 235 VVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNY 272
V+V + GNEG + A P I VGA + +++++
Sbjct: 257 VIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 294
>pdb|2DQA|A Chain A, Crystal Structure Of Tapes Japonica Lysozyme
pdb|2DQA|B Chain B, Crystal Structure Of Tapes Japonica Lysozyme
Length = 124
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 104 PSK-WKGICQNDKDARFHCNRYFNQDYAVH-KGPLNSSFYSARDKNG-----HGSHTL 154
P K WK C ND + C + + + YA H + PLN + AR+ NG H S TL
Sbjct: 53 PGKDWKS-CSNDINCSSKCVQQYMKRYATHYRCPLNCEGF-AREHNGGPNGCHSSRTL 108
>pdb|3CHX|A Chain A, Crystal Structure Of Methylosinus Trichosporium Ob3b
Particulate Methane Monooxygenase (Pmmo)
pdb|3CHX|E Chain E, Crystal Structure Of Methylosinus Trichosporium Ob3b
Particulate Methane Monooxygenase (Pmmo)
pdb|3CHX|I Chain I, Crystal Structure Of Methylosinus Trichosporium Ob3b
Particulate Methane Monooxygenase (Pmmo)
Length = 392
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 561 NVGSPGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNA 607
N G PG V+T Q + AP+S+ + VG++ +F +++KA+ A
Sbjct: 58 NAGEPGP--VLVRTAQFIGEQFAPRSVS-LEVGKDYAFSIDLKARRA 101
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 140 FYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYD 199
+YS+RD NGHG+H G+ +G K K ++ G K D G Y
Sbjct: 60 YYSSRDGNGHGTHCAG------TVGSRTYGVAK--------KTQLFGVKVLDDNGSGQYS 105
Query: 200 CDIIAAFDMAIHD 212
IIA D D
Sbjct: 106 T-IIAGMDFVASD 117
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 140 FYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYD 199
+YS+RD NGHG+H G+ +G K K ++ G K D G Y
Sbjct: 60 YYSSRDGNGHGTHCAG------TVGSRTYGVAK--------KTQLFGVKVLDDNGSGQYS 105
Query: 200 CDIIAAFDMAIHD 212
IIA D D
Sbjct: 106 T-IIAGMDFVASD 117
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
Lanata
pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
Lanata In Complex With Nadp
Length = 364
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 183 RVAGYKACWDGMGGCYDCDIIA 204
R G KA WDG C D D+IA
Sbjct: 211 RFTGCKAAWDGYSDCSDADLIA 232
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTA 457
+ S+SGTSM+ P+++G+AGL + S + +++AI TA
Sbjct: 218 YASLSGTSMATPHVAGVAGL--LASQGRSASNIRAAIENTA 256
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 417 FNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTA 457
+ S+SGTSM+ P+++G+AGL + S + +++AI TA
Sbjct: 218 YASLSGTSMATPHVAGVAGL--LASQGRSASNIRAAIENTA 256
>pdb|4E0P|A Chain A, Protelomerase Tela Covalently Complexed With Substrate Dna
pdb|4E0Y|A Chain A, Protelomerase Tela Covalently Complexed With Mutated
Substrate Dna
Length = 462
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 474 EATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKN 532
E P YG H+ +A ++T N Y F LG+N N + + TYT P++
Sbjct: 377 EELPKPYGLRHLYAEVAYHNFAPPHVTKNSY--FAAILGHNNNDLETSLSXMTYTLPED 433
>pdb|4E10|A Chain A, Protelomerase Tela Y201a Covalently Complexed With
Substrate Dna
Length = 462
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 474 EATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKN 532
E P YG H+ +A ++T N Y F LG+N N + + TYT P++
Sbjct: 377 EELPKPYGLRHLYAEVAYHNFAPPHVTKNSY--FAAILGHNNNDLETSLSXMTYTLPED 433
>pdb|4E0Z|A Chain A, Protelomerase Tela R205a Covalently Complexed With
Substrate Dna
Length = 462
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 474 EATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKN 532
E P YG H+ +A ++T N Y F LG+N N + + TYT P++
Sbjct: 377 EELPKPYGLRHLYAEVAYHNFAPPHVTKNSY--FAAILGHNNNDLETSLSXMTYTLPED 433
>pdb|4DWP|A Chain A, Semet Protelomerase Tela Covalently Complexed With
Substrate Dna
Length = 462
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 474 EATPFSYGAGHVQPNLAMDPGLVYYLTVNDYLNFLCALGYNKNVISLFSTNCTYTCPKN 532
E P YG H+ +A ++T N Y F LG+N N + + TYT P++
Sbjct: 377 EELPKPYGLRHLYAEVAYHNFAPPHVTKNSY--FAAILGHNNNDLETSLSXXTYTLPED 433
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 417 FNSISGTSMSGPYISGIAGL----PKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASF 472
++ ++GTSM+ P++SG+A L ++ + +PA ++ +++T + + + + L +
Sbjct: 269 YSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSGI 328
Query: 473 TEA 475
+A
Sbjct: 329 VDA 331
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 417 FNSISGTSMSGPYISGIAGL----PKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASF 472
++ ++GTSM+ P++SG+A L ++ + +PA ++ +++T + + + + L +
Sbjct: 269 YSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSGI 328
Query: 473 TEA 475
+A
Sbjct: 329 VDA 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,721,551
Number of Sequences: 62578
Number of extensions: 868552
Number of successful extensions: 1948
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1758
Number of HSP's gapped (non-prelim): 178
length of query: 620
length of database: 14,973,337
effective HSP length: 105
effective length of query: 515
effective length of database: 8,402,647
effective search space: 4327363205
effective search space used: 4327363205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)