Query 042484
Match_columns 620
No_of_seqs 315 out of 2777
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.9E-48 4E-53 405.9 24.1 216 45-264 1-235 (307)
2 PTZ00262 subtilisin-like prote 100.0 5.4E-46 1.2E-50 403.8 21.2 275 67-497 304-618 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 1.1E-45 2.3E-50 374.0 21.5 220 70-460 1-253 (255)
4 cd05562 Peptidases_S53_like Pe 100.0 1.3E-45 2.8E-50 376.3 21.1 247 73-492 1-274 (275)
5 cd07497 Peptidases_S8_14 Pepti 100.0 1.6E-45 3.6E-50 381.1 21.1 254 76-457 1-311 (311)
6 cd07478 Peptidases_S8_CspA-lik 100.0 5.8E-45 1.3E-49 395.5 19.4 376 74-483 1-455 (455)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 7.6E-44 1.6E-48 377.7 23.9 289 68-492 1-346 (346)
8 cd07476 Peptidases_S8_thiazoli 100.0 1.1E-43 2.3E-48 361.2 22.7 228 69-462 2-254 (267)
9 cd07489 Peptidases_S8_5 Peptid 100.0 2.2E-43 4.8E-48 368.6 23.6 270 67-494 3-300 (312)
10 cd07474 Peptidases_S8_subtilis 100.0 6.4E-42 1.4E-46 355.0 23.8 265 76-490 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 6.4E-42 1.4E-46 353.3 21.6 183 141-458 79-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 2E-41 4.3E-46 339.8 21.3 220 79-483 1-239 (239)
13 cd04857 Peptidases_S8_Tripepti 100.0 8.2E-41 1.8E-45 352.7 24.8 197 144-460 182-412 (412)
14 cd07481 Peptidases_S8_Bacillop 100.0 9.1E-41 2E-45 340.6 21.4 226 76-458 1-264 (264)
15 cd07485 Peptidases_S8_Fervidol 100.0 1.3E-40 2.8E-45 341.2 22.5 177 68-266 1-195 (273)
16 cd07493 Peptidases_S8_9 Peptid 100.0 5.6E-40 1.2E-44 334.3 20.0 221 78-458 1-261 (261)
17 cd07494 Peptidases_S8_10 Pepti 100.0 1.5E-39 3.3E-44 335.7 20.5 146 65-266 9-175 (298)
18 cd07487 Peptidases_S8_1 Peptid 100.0 4.2E-39 9.2E-44 328.4 22.2 225 76-458 1-264 (264)
19 cd07484 Peptidases_S8_Thermita 100.0 9.2E-39 2E-43 325.3 23.3 161 66-266 18-186 (260)
20 cd04847 Peptidases_S8_Subtilis 100.0 3.6E-39 7.9E-44 333.5 16.9 228 80-458 2-291 (291)
21 cd07490 Peptidases_S8_6 Peptid 100.0 2E-38 4.4E-43 321.6 21.8 152 78-267 1-162 (254)
22 cd07473 Peptidases_S8_Subtilis 100.0 3.4E-38 7.3E-43 321.0 23.0 233 77-458 2-259 (259)
23 cd07496 Peptidases_S8_13 Pepti 100.0 3.9E-38 8.4E-43 324.9 22.9 176 78-267 1-201 (285)
24 cd04077 Peptidases_S8_PCSK9_Pr 100.0 2.3E-38 5E-43 321.4 20.5 215 69-459 17-255 (255)
25 cd07498 Peptidases_S8_15 Pepti 100.0 1.4E-37 3E-42 313.3 21.5 151 79-267 1-164 (242)
26 cd07480 Peptidases_S8_12 Pepti 100.0 2E-37 4.2E-42 321.4 21.5 134 72-247 3-172 (297)
27 cd04842 Peptidases_S8_Kp43_pro 100.0 1.1E-37 2.5E-42 322.8 19.3 248 72-458 2-293 (293)
28 cd04843 Peptidases_S8_11 Pepti 100.0 1.2E-37 2.5E-42 318.2 18.5 149 66-265 4-187 (277)
29 cd07482 Peptidases_S8_Lantibio 100.0 2.6E-37 5.7E-42 320.2 20.3 160 78-268 1-202 (294)
30 cd07477 Peptidases_S8_Subtilis 100.0 5.8E-37 1.3E-41 306.0 21.3 149 78-266 1-159 (229)
31 cd04059 Peptidases_S8_Protein_ 100.0 3.9E-37 8.4E-42 319.5 16.2 165 65-268 27-217 (297)
32 cd07492 Peptidases_S8_8 Peptid 100.0 3.8E-36 8.2E-41 298.8 20.2 143 78-266 1-153 (222)
33 cd04848 Peptidases_S8_Autotran 100.0 6.7E-36 1.4E-40 304.8 18.9 156 75-267 1-189 (267)
34 PF00082 Peptidase_S8: Subtila 100.0 1.7E-36 3.8E-41 312.0 14.3 246 80-492 1-282 (282)
35 cd07491 Peptidases_S8_7 Peptid 100.0 9.3E-36 2E-40 299.3 17.8 150 76-268 2-174 (247)
36 KOG1153 Subtilisin-related pro 100.0 3.6E-34 7.9E-39 291.1 13.3 271 14-458 145-461 (501)
37 KOG4266 Subtilisin kexin isozy 100.0 5.9E-34 1.3E-38 296.7 10.4 244 65-492 189-465 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 6.1E-30 1.3E-34 277.6 14.7 214 147-492 310-557 (1304)
39 cd00306 Peptidases_S8_S53 Pept 100.0 1.2E-28 2.7E-33 246.0 21.6 154 79-267 1-169 (241)
40 cd07488 Peptidases_S8_2 Peptid 100.0 4E-28 8.6E-33 243.3 11.9 104 142-265 32-160 (247)
41 COG1404 AprE Subtilisin-like s 99.9 8.9E-21 1.9E-25 209.7 20.9 163 66-265 129-314 (508)
42 KOG3526 Subtilisin-like propro 99.7 1.1E-18 2.3E-23 174.1 5.7 160 65-263 149-336 (629)
43 cd04056 Peptidases_S53 Peptida 99.6 5.2E-15 1.1E-19 157.4 11.2 91 173-268 81-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.0 9.3E-10 2E-14 101.4 6.7 97 303-404 41-141 (143)
45 cd02120 PA_subtilisin_like PA_ 98.8 8.7E-09 1.9E-13 92.8 7.1 104 273-379 2-125 (126)
46 KOG3525 Subtilisin-like propro 98.4 1E-06 2.2E-11 95.1 8.7 143 66-245 22-186 (431)
47 PF05922 Inhibitor_I9: Peptida 98.2 2.7E-06 5.9E-11 70.2 6.0 46 3-48 37-82 (82)
48 COG4934 Predicted protease [Po 98.1 1.5E-05 3.2E-10 92.8 11.5 84 174-262 287-395 (1174)
49 PF02225 PA: PA domain; Inter 98.1 3.1E-06 6.7E-11 72.8 4.1 69 302-370 26-101 (101)
50 cd04816 PA_SaNapH_like PA_SaNa 98.0 9.6E-06 2.1E-10 72.6 4.9 75 304-378 38-120 (122)
51 cd04818 PA_subtilisin_1 PA_sub 97.9 1.1E-05 2.3E-10 71.8 4.8 74 306-379 37-117 (118)
52 cd02127 PA_hPAP21_like PA_hPAP 97.9 2.1E-05 4.6E-10 69.7 5.3 75 306-380 31-116 (118)
53 cd00538 PA PA: Protease-associ 97.9 1.8E-05 3.9E-10 70.9 4.9 75 303-377 40-123 (126)
54 cd02122 PA_GRAIL_like PA _GRAI 97.8 2.2E-05 4.8E-10 71.5 4.7 75 305-379 56-137 (138)
55 cd02126 PA_EDEM3_like PA_EDEM3 97.8 2.6E-05 5.7E-10 70.1 4.9 73 305-377 36-123 (126)
56 cd02129 PA_hSPPL_like PA_hSPPL 97.8 3.8E-05 8.2E-10 67.8 5.6 68 305-372 40-114 (120)
57 cd02130 PA_ScAPY_like PA_ScAPY 97.8 2.8E-05 6E-10 69.6 4.8 74 306-379 41-121 (122)
58 cd04817 PA_VapT_like PA_VapT_l 97.7 3.3E-05 7.2E-10 70.1 4.7 70 303-372 50-133 (139)
59 cd02132 PA_GO-like PA_GO-like: 97.7 5.4E-05 1.2E-09 69.3 4.8 73 306-378 56-137 (139)
60 cd02125 PA_VSR PA_VSR: Proteas 97.5 9.8E-05 2.1E-09 66.3 4.5 73 307-379 40-126 (127)
61 cd04813 PA_1 PA_1: Protease-as 97.4 0.00018 4E-09 63.6 4.8 70 303-372 33-111 (117)
62 PF06280 DUF1034: Fn3-like dom 97.4 0.0011 2.4E-08 58.2 9.1 75 544-619 1-97 (112)
63 cd04819 PA_2 PA_2: Protease-as 97.3 0.0012 2.5E-08 59.5 8.2 71 303-373 38-120 (127)
64 cd02124 PA_PoS1_like PA_PoS1_l 97.3 0.00036 7.8E-09 62.9 4.7 72 306-378 52-127 (129)
65 cd02123 PA_C_RZF_like PA_C-RZF 97.2 0.00041 8.9E-09 64.5 4.7 70 306-375 64-142 (153)
66 cd04815 PA_M28_2 PA_M28_2: Pro 96.7 0.0028 6E-08 57.6 5.1 74 304-377 34-131 (134)
67 PF10633 NPCBM_assoc: NPCBM-as 96.0 0.025 5.3E-07 46.1 7.0 64 551-614 5-70 (78)
68 PF14874 PapD-like: Flagellar- 94.6 0.24 5.3E-06 42.3 8.9 65 538-606 10-75 (102)
69 cd02128 PA_TfR PA_TfR: Proteas 93.9 0.069 1.5E-06 50.8 4.3 37 305-341 51-89 (183)
70 KOG2442 Uncharacterized conser 93.2 0.18 3.8E-06 54.0 6.2 78 305-382 91-177 (541)
71 PF11614 FixG_C: IG-like fold 92.6 1 2.3E-05 39.7 9.6 54 552-606 32-86 (118)
72 cd02131 PA_hNAALADL2_like PA_h 92.1 0.2 4.3E-06 45.9 4.3 37 306-342 37-75 (153)
73 cd04814 PA_M28_1 PA_M28_1: Pro 92.0 0.25 5.4E-06 45.1 4.9 40 303-342 41-100 (142)
74 cd04820 PA_M28_1_1 PA_M28_1_1: 91.1 0.35 7.6E-06 43.9 4.8 39 304-342 44-96 (137)
75 cd02121 PA_GCPII_like PA_GCPII 89.0 0.49 1.1E-05 46.6 4.3 38 305-342 67-106 (220)
76 cd04822 PA_M28_1_3 PA_M28_1_3: 88.6 0.69 1.5E-05 42.7 4.7 39 304-342 42-100 (151)
77 PF06030 DUF916: Bacterial pro 87.2 8.4 0.00018 34.2 10.6 67 550-619 26-117 (121)
78 KOG3920 Uncharacterized conser 86.2 2 4.2E-05 39.3 5.9 78 305-382 83-173 (193)
79 PF07718 Coatamer_beta_C: Coat 85.6 9 0.0002 34.8 9.9 66 552-620 70-137 (140)
80 PF00635 Motile_Sperm: MSP (Ma 85.3 4.9 0.00011 34.4 8.1 53 551-606 18-71 (109)
81 COG1470 Predicted membrane pro 85.3 2.4 5.2E-05 45.6 7.0 64 551-614 397-462 (513)
82 KOG1114 Tripeptidyl peptidase 85.2 0.56 1.2E-05 54.1 2.5 24 73-96 77-100 (1304)
83 COG1470 Predicted membrane pro 80.8 8.5 0.00018 41.6 9.0 64 551-615 284-354 (513)
84 PF00345 PapD_N: Pili and flag 78.9 11 0.00023 33.2 8.0 52 551-604 14-73 (122)
85 TIGR02745 ccoG_rdxA_fixG cytoc 78.3 8.5 0.00018 42.1 8.4 54 552-606 347-401 (434)
86 KOG4628 Predicted E3 ubiquitin 75.2 4.5 9.8E-05 42.4 5.0 67 306-372 76-149 (348)
87 cd04821 PA_M28_1_2 PA_M28_1_2: 70.1 7 0.00015 36.4 4.5 39 303-341 43-102 (157)
88 PF07705 CARDB: CARDB; InterP 69.5 23 0.0005 29.4 7.4 52 550-605 18-72 (101)
89 PF00927 Transglut_C: Transglu 66.5 42 0.0009 28.7 8.5 55 550-606 14-78 (107)
90 PF07610 DUF1573: Protein of u 65.5 17 0.00037 26.0 4.9 43 557-602 2-45 (45)
91 PF05506 DUF756: Domain of unk 60.9 62 0.0013 26.7 8.2 48 551-603 18-66 (89)
92 PRK15098 beta-D-glucoside gluc 58.4 18 0.00039 42.7 6.1 53 551-606 667-729 (765)
93 PF12690 BsuPI: Intracellular 53.2 76 0.0016 26.0 7.3 21 585-606 52-72 (82)
94 PF08260 Kinin: Insect kinin p 50.0 7.3 0.00016 17.3 0.4 6 397-402 3-8 (8)
95 TIGR01451 B_ant_repeat conserv 47.5 72 0.0016 23.7 5.8 38 550-589 11-50 (53)
96 smart00635 BID_2 Bacterial Ig- 46.3 40 0.00086 27.3 4.7 27 579-606 4-30 (81)
97 PF02845 CUE: CUE domain; Int 40.5 19 0.00041 25.3 1.6 23 435-457 6-28 (42)
98 PF08821 CGGC: CGGC domain; I 38.5 1.4E+02 0.003 25.9 6.9 45 173-221 28-73 (107)
99 PLN03080 Probable beta-xylosid 37.2 70 0.0015 38.0 6.5 51 552-604 685-744 (779)
100 PF01345 DUF11: Domain of unkn 32.7 97 0.0021 24.5 4.9 31 550-580 40-72 (76)
101 PF13598 DUF4139: Domain of un 31.7 1.8E+02 0.004 30.0 8.1 53 552-605 243-314 (317)
102 TIGR02695 azurin azurin. Azuri 31.6 2.4E+02 0.0051 25.2 7.3 34 536-571 10-49 (125)
103 smart00237 Calx_beta Domains i 29.2 3.2E+02 0.007 22.4 8.0 61 541-604 8-75 (90)
104 PRK13203 ureB urease subunit b 27.8 1.1E+02 0.0025 26.0 4.5 51 551-602 18-83 (102)
105 TIGR00192 urease_beta urease, 26.8 1.3E+02 0.0028 25.7 4.6 51 551-602 18-83 (101)
106 PF00553 CBM_2: Cellulose bind 26.2 4E+02 0.0086 22.5 9.2 56 551-606 13-86 (101)
107 PF04255 DUF433: Protein of un 26.0 40 0.00087 25.3 1.4 35 420-454 14-54 (56)
108 PF13940 Ldr_toxin: Toxin Ldr, 25.8 31 0.00068 23.0 0.6 13 425-437 14-26 (35)
109 PF11589 DUF3244: Domain of un 25.8 4.2E+02 0.0091 22.6 8.4 65 544-619 39-104 (106)
110 PF04744 Monooxygenase_B: Mono 25.6 3E+02 0.0065 29.3 8.0 52 550-605 262-336 (381)
111 PRK15308 putative fimbrial pro 24.5 2.6E+02 0.0055 27.9 7.1 52 552-604 32-100 (234)
112 cd00407 Urease_beta Urease bet 23.3 1.6E+02 0.0035 25.1 4.5 51 551-602 18-83 (101)
113 PF07233 DUF1425: Protein of u 23.0 4.5E+02 0.0097 22.0 8.7 55 547-602 20-80 (94)
114 TIGR00845 caca sodium/calcium 23.0 9.3E+02 0.02 29.2 12.3 63 539-604 404-474 (928)
115 PRK13202 ureB urease subunit b 22.8 1.7E+02 0.0037 25.1 4.6 49 553-602 21-84 (104)
116 PRK15019 CsdA-binding activato 22.8 47 0.001 30.6 1.4 31 420-451 79-109 (147)
117 TIGR03391 FeS_syn_CsdE cystein 22.2 49 0.0011 30.1 1.4 31 420-451 74-104 (138)
118 PRK09918 putative fimbrial cha 22.2 3.7E+02 0.008 26.6 7.8 52 551-604 38-94 (230)
119 PRK13201 ureB urease subunit b 22.0 1.7E+02 0.0036 26.3 4.6 51 551-602 18-83 (136)
120 smart00546 CUE Domain that may 21.9 72 0.0016 22.3 2.0 24 433-456 5-28 (43)
121 PF05753 TRAP_beta: Translocon 21.8 5.2E+02 0.011 24.6 8.4 55 550-605 37-98 (181)
122 PRK13205 ureB urease subunit b 21.8 1.7E+02 0.0036 26.9 4.6 51 551-602 18-83 (162)
123 COG5066 SCS2 VAMP-associated p 20.4 3.4E+02 0.0073 26.5 6.6 50 553-605 19-69 (242)
124 PF11611 DUF4352: Domain of un 20.3 4.8E+02 0.01 22.2 7.5 54 552-606 37-103 (123)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-48 Score=405.86 Aligned_cols=216 Identities=50% Similarity=0.790 Sum_probs=177.3
Q ss_pred eeeccCCCccccCcccCCCCCCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCC-CCcccCc
Q 042484 45 KKLHTTHSWEFLGLEQNGRIPPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKD-ARFHCNR 123 (620)
Q Consensus 45 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~-~~~~~n~ 123 (620)
++++++++++|++++..- ...+|..+.+|+||+|||||||||++||+|.+.+..+.+..|.+.|..+.. ....||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCC---CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 468899999999998542 112577799999999999999999999999998888899999999987766 4445666
Q ss_pred ------cccccc-cccCCCCCCCCCCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCC
Q 042484 124 ------YFNQDY-AVHKGPLNSSFYSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGG 196 (620)
Q Consensus 124 ------~~~~~~-~~~~~~~~~~~~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~ 196 (620)
+|..++ .......+.+..++.|..||||||||||||+...+..+.|...+.+.||||+|+|+++|+++.. +.
T Consensus 78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~-~~ 156 (307)
T cd04852 78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD-GG 156 (307)
T ss_pred eEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC-CC
Confidence 222222 1100112334667889999999999999999877666666667789999999999999999985 56
Q ss_pred CCHHHHHHHHHHHHhCCCcEEeecH-----------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccc
Q 042484 197 CYDCDIIAAFDMAIHDGVDMLSVSL-----------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGAST 264 (620)
Q Consensus 197 ~~~~~i~~ai~~a~~~gvdVIn~Sl-----------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~ 264 (620)
+..+++++||++|++++++|||||| +..+...+.++|+++|+||||+|+...+.++..||+++||+++
T Consensus 157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~ 235 (307)
T cd04852 157 CFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235 (307)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc
Confidence 8999999999999999999999999 4556677889999999999999988888888899999999965
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=5.4e-46 Score=403.76 Aligned_cols=275 Identities=17% Similarity=0.110 Sum_probs=189.7
Q ss_pred ccccc--cCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccc--cccccCCCCCCCCCC
Q 042484 67 NSIWE--KARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQ--DYAVHKGPLNSSFYS 142 (620)
Q Consensus 67 ~~~~~--~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~--~~~~~~~~~~~~~~~ 142 (620)
.++|+ .+.+|+||+|||||||||++||+|.+.-.. -+....|+...+.+ -|.+..+ +| .+-....+
T Consensus 304 ~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~-n~~el~GrdgiDdD----~nG~vdd~~G~-----nfVd~~~~ 373 (639)
T PTZ00262 304 DETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDV-NVKELHGRKGIDDD----NNGNVDDEYGA-----NFVNNDGG 373 (639)
T ss_pred hHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccc-ccccccCccccccc----cCCcccccccc-----cccCCCCC
Confidence 45665 456899999999999999999999864110 01111111100000 0001111 11 11122345
Q ss_pred CCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-
Q 042484 143 ARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL- 221 (620)
Q Consensus 143 ~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl- 221 (620)
|.|..||||||||||||...+ ...+.||||+|+|+++|+++.. |.+..+++++||+||++.|++||||||
T Consensus 374 P~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~-G~G~~sdI~~AI~yA~~~GA~VINmSlG 444 (639)
T PTZ00262 374 PMDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSH-KLGRLGDMFKCFDYCISREAHMINGSFS 444 (639)
T ss_pred CCCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCC-CCccHHHHHHHHHHHHHCCCCEEEeccc
Confidence 789999999999999987532 3458899999999999999887 778999999999999999999999999
Q ss_pred -------HHHHHHHHHhcCcEEEEecCCCCCCCCc--------------cCC----CCCceEEecccccCCcccceEEeC
Q 042484 222 -------VAIGSFHAVQHGIVVVCSDGNEGLVDVT--------------LQN----AAPRQIVVGASTMDRDLSNYVVLG 276 (620)
Q Consensus 222 -------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t--------------~~~----~ap~vitVga~~~~~~~~~~~~~g 276 (620)
+..++.+|.++|++||+||||+|+.... .+. ..|.||+|||+..+..-. ..+
T Consensus 445 ~~~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~~~--~s~- 521 (639)
T PTZ00262 445 FDEYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKNNQ--YSL- 521 (639)
T ss_pred cCCccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCCCc--ccc-
Confidence 5667778899999999999999854211 111 136789998865332100 000
Q ss_pred CCeEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccE
Q 042484 277 NNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPA 356 (620)
Q Consensus 277 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~ 356 (620)
T Consensus 522 -------------------------------------------------------------------------------- 521 (639)
T PTZ00262 522 -------------------------------------------------------------------------------- 521 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchh
Q 042484 357 SVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSG 427 (620)
Q Consensus 357 ~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAa 427 (620)
+.||.+|. .++||+| +++.|..++||||||
T Consensus 522 ---------------------------------------s~~Snyg~--~~VDIaAPG~dI~St~p~g~Y~~~SGTSmAA 560 (639)
T PTZ00262 522 ---------------------------------------SPNSFYSA--KYCQLAAPGTNIYSTFPKNSYRKLNGTSMAA 560 (639)
T ss_pred ---------------------------------------cccccCCC--CcceEEeCCCCeeeccCCCceeecCCCchhH
Confidence 00000000 0011111 356899999999999
Q ss_pred hhhhhhhhhhcccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceec-ccccCccccCCCceee
Q 042484 428 PYISGIAGLPKILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYG-AGHVQPNLAMDPGLVY 497 (620)
Q Consensus 428 P~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G-aG~vn~~~A~~~~lv~ 497 (620)
|||||+||||++++|+|+++||+++|++||.++.. .+..+| .|+||+++|++..+-+
T Consensus 561 P~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~-------------~~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 561 PHVAAIASLILSINPSLSYEEVIRILKESIVQLPS-------------LKNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCC-------------CCCccccCcEEcHHHHHHHHHhc
Confidence 99999999999999999999999999999987532 112233 3899999999865543
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.1e-45 Score=374.03 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=178.0
Q ss_pred cccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCC
Q 042484 70 WEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGH 149 (620)
Q Consensus 70 ~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gH 149 (620)
|+++++|+||+|||||||||.+||+|.+.. . .. +| .......|+.||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~------------~-~~------------~~--------~~~~~~~d~~gH 47 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK------------E-RT------------NW--------TNEKTLDDGLGH 47 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc------------c-cc------------cc--------CCCCCCCCCCCc
Confidence 889999999999999999999999997410 0 00 01 001234577899
Q ss_pred hhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH--------
Q 042484 150 GSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL-------- 221 (620)
Q Consensus 150 GTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl-------- 221 (620)
||||||||+|+. ....||||+|+|+.+|++.+. +.+..+.++++|++|++.++|||||||
T Consensus 48 GT~VAGiIa~~~-----------~~~~GvAp~a~l~~~~v~~~~-~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~~~~~ 115 (255)
T cd07479 48 GTFVAGVIASSR-----------EQCLGFAPDAEIYIFRVFTNN-QVSYTSWFLDAFNYAILTKIDVLNLSIGGPDFMDK 115 (255)
T ss_pred HHHHHHHHHccC-----------CCceeECCCCEEEEEEeecCC-CCchHHHHHHHHHhhhhcCCCEEEeeccCCCCCCc
Confidence 999999999874 236899999999999999887 567788899999999999999999999
Q ss_pred -HHHHHHHHHhcCcEEEEecCCCCCCCCccCCC--CCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceee
Q 042484 222 -VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNA--APRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFT 298 (620)
Q Consensus 222 -~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~--ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 298 (620)
+..+...+.++|++||+||||+|+...+..+| .+++|+|||...+
T Consensus 116 ~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~-------------------------------- 163 (255)
T cd07479 116 PFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD-------------------------------- 163 (255)
T ss_pred HHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC--------------------------------
Confidence 33456667789999999999999866665444 5789999985422
Q ss_pred EEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEE
Q 042484 299 FIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVG 378 (620)
Q Consensus 299 ~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 378 (620)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCceeecCCCCCceeeccCCCCC---------CCCCceee---------cCCCcEEeccccchhhhhhhhhhhhccc
Q 042484 379 YIKRPTTEFGAKPAPYMAALSSKGPI---------HITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKIL 440 (620)
Q Consensus 379 ~i~~~~~~~~~~~~~~~a~FSS~GP~---------~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~ 440 (620)
+.++.||++||+ ++||||+| ..+.|..++|||||||||||++|||+|+
T Consensus 164 --------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~~~~~~sGTS~AaP~VaG~aAll~s~ 229 (255)
T cd07479 164 --------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKGGCRALSGTSVASPVVAGAVALLLST 229 (255)
T ss_pred --------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCCCeEEeccHHHHHHHHHHHHHHHHHh
Confidence 223456777653 35788877 3467999999999999999999999999
Q ss_pred CC----CCCHHHHHHHHHcccccC
Q 042484 441 HP----DWSPAAVQSAIMTTATTQ 460 (620)
Q Consensus 441 ~P----~~sp~~ik~~L~~TA~~~ 460 (620)
+| .++|++||++|++||+++
T Consensus 230 ~p~~~~~~~p~~vk~~L~~sA~~~ 253 (255)
T cd07479 230 VPEKRDLINPASMKQALIESATRL 253 (255)
T ss_pred CccccCCCCHHHHHHHHHhhcccC
Confidence 99 799999999999999876
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.3e-45 Score=376.31 Aligned_cols=247 Identities=21% Similarity=0.227 Sum_probs=183.3
Q ss_pred CCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhh
Q 042484 73 ARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSH 152 (620)
Q Consensus 73 ~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTH 152 (620)
+++|+||+|||||||||.+||+|.+..-..+ .+..... .......|..+||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l----~~~~~~~-----------------------~~~~~~~d~~gHGT~ 53 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDL----PGNVNVL-----------------------GDLDGGSGGGDEGRA 53 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCC----Ccceeec-----------------------cccCCCCCCCchHHH
Confidence 5789999999999999999986543111111 1111000 002234578899999
Q ss_pred hhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-----------
Q 042484 153 TLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----------- 221 (620)
Q Consensus 153 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl----------- 221 (620)
|||||+ ||||+|+|+.+|+. ...+++++||+||++.|++||||||
T Consensus 54 vAgii~------------------GvAP~a~l~~~~~~------~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 109 (275)
T cd05562 54 MLEIIH------------------DIAPGAELAFHTAG------GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDG 109 (275)
T ss_pred HHHHHh------------------ccCCCCEEEEEecC------CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCC
Confidence 999995 89999999998863 3478999999999999999999999
Q ss_pred -HHHHHHHHHhc-CcEEEEecCCCCCCCCc-cCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceee
Q 042484 222 -VAIGSFHAVQH-GIVVVCSDGNEGLVDVT-LQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFT 298 (620)
Q Consensus 222 -~~~~~~~a~~~-Gv~vV~AAGN~G~~~~t-~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 298 (620)
+..+..++.++ |++||+||||+|+.... .+...|++|+|||++.+.........+.
T Consensus 110 ~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~--------------------- 168 (275)
T cd05562 110 PIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP--------------------- 168 (275)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc---------------------
Confidence 34556667776 99999999999974322 2345799999999764432100000000
Q ss_pred EEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEE
Q 042484 299 FIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVG 378 (620)
Q Consensus 299 ~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~ 378 (620)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeCCceeecCCCCCceeeccCCCCC---CCCCceeec----------CCCcEEeccccchhhhhhhhhhhhcccCCCCC
Q 042484 379 YIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKR----------RIPFNSISGTSMSGPYISGIAGLPKILHPDWS 445 (620)
Q Consensus 379 ~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~----------~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~s 445 (620)
.......+.||+|||+ ..||||+|+ ++.|..++|||||||||||++|||+|++|+|+
T Consensus 169 ----------~~~~s~~~~~~~~~p~~~~~~~~di~Apgg~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt 238 (275)
T cd05562 169 ----------GGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGDGDGPPNFFGTSAAAPHAAGVAALVLSANPGLT 238 (275)
T ss_pred ----------CCCcccccCCcccCcCCCCCcCCeEEcCCcccccCCCcCCceeecccchHHHHHHHHHHHHHHHhCCCCC
Confidence 0001123457888886 579999883 35789999999999999999999999999999
Q ss_pred HHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 446 PAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 446 p~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
++|||++|++||+++.. +..+..||||+||+.+|++
T Consensus 239 ~~~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 239 PADIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 99999999999987642 2345689999999999986
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-45 Score=381.13 Aligned_cols=254 Identities=26% Similarity=0.313 Sum_probs=171.3
Q ss_pred CCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhH
Q 042484 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLS 155 (620)
Q Consensus 76 G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAG 155 (620)
|+||+|||||||||++||+|.+.... .|...+ .+...+..++ .........+.|+.||||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~--------d~~~~~~~g~----d~~~~~~~~~~D~~gHGThvAG 64 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKF--------DYKAYLLPGM----DKWGGFYVIMYDFFSHGTSCAS 64 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccccc--------CcCCCccCCc----CCCCCccCCCCCccccchhHHH
Confidence 89999999999999999999753110 000000 0000011111 0001112346789999999999
Q ss_pred hhcccCCCCCceecc-CCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHH-------HHH--HHhCCCcEEeecH-H--
Q 042484 156 RAGGNFVAGASVFGF-GKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAA-------FDM--AIHDGVDMLSVSL-V-- 222 (620)
Q Consensus 156 iaag~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~a-------i~~--a~~~gvdVIn~Sl-~-- 222 (620)
||||.........|+ ....+.||||+|+|+.+|++... +.+....+.++ ++| +.++++||||||| .
T Consensus 65 iiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~ 143 (311)
T cd07497 65 VAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFG-DVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISN 143 (311)
T ss_pred HHhccCcccccccccccccceeeeCCCCEEEEEEEEecC-CcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCC
Confidence 999986432221111 12468999999999999999755 33433333333 333 3368999999999 1
Q ss_pred -------------HHHHHH-HHhcCcEEEEecCCCCCCCCccCCC--CCceEEecccccCCcccceEEeCCCeEEEEeec
Q 042484 223 -------------AIGSFH-AVQHGIVVVCSDGNEGLVDVTLQNA--APRQIVVGASTMDRDLSNYVVLGNNKRFKLISE 286 (620)
Q Consensus 223 -------------~~~~~~-a~~~Gv~vV~AAGN~G~~~~t~~~~--ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~ 286 (620)
...... +.++|+++|+||||+|+...++..| ++++|+|||++.....+...
T Consensus 144 ~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~------------- 210 (311)
T cd07497 144 FAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL------------- 210 (311)
T ss_pred CCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-------------
Confidence 111221 2489999999999999876666655 58999999975322100000
Q ss_pred cCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcce
Q 042484 287 RAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYY 366 (620)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 366 (620)
T Consensus 211 -------------------------------------------------------------------------------- 210 (311)
T cd07497 211 -------------------------------------------------------------------------------- 210 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeecC-------------------CCcEEecccc
Q 042484 367 NLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKRR-------------------IPFNSISGTS 424 (620)
Q Consensus 367 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~~-------------------~~y~~~sGTS 424 (620)
........+.++.||||||+ ++||||+|++ ..|..++|||
T Consensus 211 ------------------~~~~~~~~~~~~~fSs~Gp~~~g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTS 272 (311)
T cd07497 211 ------------------FGYLPGGSGDVVSWSSRGPSIAGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTS 272 (311)
T ss_pred ------------------hccccCCCCCccccccCCCCcccCCCCceeccCcceEeecccCCCCcccCCCcceeeecchh
Confidence 00000113557899999997 6899999821 2689999999
Q ss_pred chhhhhhhhhhhhcccCC------CCCHHHHHHHHHccc
Q 042484 425 MSGPYISGIAGLPKILHP------DWSPAAVQSAIMTTA 457 (620)
Q Consensus 425 MAaP~VAG~aALl~~~~P------~~sp~~ik~~L~~TA 457 (620)
||||||||++|||+|++| .++|++||++|++||
T Consensus 273 mAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 273 MATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999999999999999886 589999999999997
No 6
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=5.8e-45 Score=395.52 Aligned_cols=376 Identities=19% Similarity=0.229 Sum_probs=222.6
Q ss_pred CCCCCcEEEEeccccCCCCcCcCC-CCCCCCCCCcceeeecCCCCCcccCc-cccccc--cccCCCCCCCCCCCCCCCCC
Q 042484 74 RYGEDIIIGNLDTGVWRESKSFGD-EGFGPIPSKWKGICQNDKDARFHCNR-YFNQDY--AVHKGPLNSSFYSARDKNGH 149 (620)
Q Consensus 74 ~~G~GV~VgVIDTGId~~Hp~f~~-~g~~~~~~~~~g~~~~~~~~~~~~n~-~~~~~~--~~~~~~~~~~~~~~~D~~gH 149 (620)
.+|+||+|||||||||++||+|++ +|.+++...|++....+..+...... ++..+- .......+.+.....|+.||
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~GH 80 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCceEEeHHHHHHHHhcCCccccCcCCCCCCc
Confidence 379999999999999999999996 67889999999887755431111111 111100 00011122334456789999
Q ss_pred hhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCC----------CCHHHHHHHHHHHHhC-----CC
Q 042484 150 GSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGG----------CYDCDIIAAFDMAIHD-----GV 214 (620)
Q Consensus 150 GTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~----------~~~~~i~~ai~~a~~~-----gv 214 (620)
||||||||||+..+ ...+.||||+|+|+++|++... +. +...+++.||+|+++. .+
T Consensus 81 GThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~-~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p 151 (455)
T cd07478 81 GTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAK-KYLREFYEDVPFYQETDIMLAIKYLYDKALELNKP 151 (455)
T ss_pred hHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCC-CcccccccccccCcHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999642 2568999999999999999887 43 6788999999999874 36
Q ss_pred cEEeecH------------HHHHHHHHHhc-CcEEEEecCCCCCCCCccCCC-----CC--ceEEecccccCCcccceEE
Q 042484 215 DMLSVSL------------VAIGSFHAVQH-GIVVVCSDGNEGLVDVTLQNA-----AP--RQIVVGASTMDRDLSNYVV 274 (620)
Q Consensus 215 dVIn~Sl------------~~~~~~~a~~~-Gv~vV~AAGN~G~~~~t~~~~-----ap--~vitVga~~~~~~~~~~~~ 274 (620)
.|||||| ++.+...+..+ |++||+||||+|....+.... .. --+.|+. .+..+.-+++
T Consensus 152 ~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~--~~~~~~~eiW 229 (455)
T cd07478 152 LVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGE--GEKGFNLEIW 229 (455)
T ss_pred eEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECC--CCcceEEEEe
Confidence 7999999 45555555554 999999999999643333221 11 1123333 1122211222
Q ss_pred eCCCeEEEEeeccC-CC----CC----CCceeeEE--------EccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEE
Q 042484 275 LGNNKRFKLISERA-KG----LP----SDKLFTFI--------RTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVL 337 (620)
Q Consensus 275 ~g~~~~~~g~~~~~-~~----~~----~~~~~~~~--------~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~ 337 (620)
...-..+.-.-+.+ ++ .. ....+.+. ....+....|.-.+..+. .+ ...|---+.+
T Consensus 230 ~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~------~~-~~~GiW~i~~ 302 (455)
T cd07478 230 GDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRF------KN-IKPGIWKIRL 302 (455)
T ss_pred cCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEc------cC-CCccceEEEE
Confidence 21111110000000 00 00 00001111 122233333333333220 00 0011111222
Q ss_pred ecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEEeCCce---eec--CCCCCceeeccCCCCC---CCCCc
Q 042484 338 VNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTT---EFG--AKPAPYMAALSSKGPI---HITPE 409 (620)
Q Consensus 338 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~---~~~--~~~~~~~a~FSS~GP~---~~kPd 409 (620)
..... .......|+|.-.+...+. .++......++++..... .++ +.....++.||||||+ ++|||
T Consensus 303 ~~~~~---~~g~~~~Wlp~~~~~~~~t---~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~~~~~kpd 376 (455)
T cd07478 303 TGVSI---TDGRFDAWLPSRGLLSENT---RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTRDGRIKPD 376 (455)
T ss_pred EeccC---CCceEEEEecCcCcCCCCC---EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCCCCCcCce
Confidence 22111 1112234555444333222 233333333333322111 111 2234568999999998 68999
Q ss_pred eee---------cCCCcEEeccccchhhhhhhhhhhhcccC------CCCCHHHHHHHHHcccccCCCCcceeccCCCCC
Q 042484 410 ILK---------RRIPFNSISGTSMSGPYISGIAGLPKILH------PDWSPAAVQSAIMTTATTQDNKKQQILDASFTE 474 (620)
Q Consensus 410 i~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~------P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~ 474 (620)
|+| +.+.|..++|||||||||||++|||+|.+ |.|++++||++|++||+++.. ..
T Consensus 377 i~APG~~i~s~~~~~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~----------~~ 446 (455)
T cd07478 377 IAAPGVNILTASPGGGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPG----------DE 446 (455)
T ss_pred EEecCCCEEEeecCCcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCC----------CC
Confidence 999 66789999999999999999999999865 567999999999999998742 24
Q ss_pred CCCceeccc
Q 042484 475 ATPFSYGAG 483 (620)
Q Consensus 475 ~~~~~~GaG 483 (620)
+++.+||||
T Consensus 447 ~pn~~~GyG 455 (455)
T cd07478 447 YPNPEWGYG 455 (455)
T ss_pred CCCCCCCCC
Confidence 567899998
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=7.6e-44 Score=377.70 Aligned_cols=289 Identities=26% Similarity=0.387 Sum_probs=203.8
Q ss_pred cccccCC-CCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCC-CCcccCcccccc----c-cccCCCCCCCC
Q 042484 68 SIWEKAR-YGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKD-ARFHCNRYFNQD----Y-AVHKGPLNSSF 140 (620)
Q Consensus 68 ~~~~~~~-~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~-~~~~~n~~~~~~----~-~~~~~~~~~~~ 140 (620)
++|+++. +|+||+|||||||||++||+|.+....+. .|+..+..... ....+++|+.+. | .. ......
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 75 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKA--KYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYA---DNNDDI 75 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCccc--ccchhhhhhhhcccCCCCcccccCCCeeEcCC---CCCCcc
Confidence 3788887 99999999999999999999986533221 11100000000 111122222221 1 00 001112
Q ss_pred CCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeC--CCCCCCHHHHHHHHHHHHhCCCcEEe
Q 042484 141 YSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWD--GMGGCYDCDIIAAFDMAIHDGVDMLS 218 (620)
Q Consensus 141 ~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~~i~~ai~~a~~~gvdVIn 218 (620)
....|..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. . +.+....++++++++++.|++|||
T Consensus 76 ~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~-~~~~~~~~~~ai~~a~~~g~~Vin 149 (346)
T cd07475 76 LDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEG-GSTYDDAYAKAIEDAVKLGADVIN 149 (346)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCC-CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 2245788999999999999874311 1346899999999999999974 3 568889999999999999999999
Q ss_pred ecH------------HHHHHHHHHhcCcEEEEecCCCCCCCCccCC----------------CCCceEEecccccCCccc
Q 042484 219 VSL------------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQN----------------AAPRQIVVGASTMDRDLS 270 (620)
Q Consensus 219 ~Sl------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~----------------~ap~vitVga~~~~~~~~ 270 (620)
||| +..+..++.++|+++|+||||+|........ ..+.+|+|++...
T Consensus 150 ~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~----- 224 (346)
T cd07475 150 MSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK----- 224 (346)
T ss_pred ECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc-----
Confidence 999 4556677889999999999999853322111 1244455544220
Q ss_pred ceEEeCCCeEEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCC
Q 042484 271 NYVVLGNNKRFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTD 350 (620)
Q Consensus 271 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~ 350 (620)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccEEEeecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee---------cCCCcE
Q 042484 351 RHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK---------RRIPFN 418 (620)
Q Consensus 351 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a---------~~~~y~ 418 (620)
.........++.||+|||+ ++||||+| ..+.|.
T Consensus 225 -----------------------------------~~~~~~~~~~~~~S~~G~~~~~~~~pdi~apG~~i~s~~~~~~~~ 269 (346)
T cd07475 225 -----------------------------------KVPNPNGGQMSGFSSWGPTPDLDLKPDITAPGGNIYSTVNDNTYG 269 (346)
T ss_pred -----------------------------------ccCCCCCCccCCCcCCCCCcccCcCCeEEeCCCCeEEecCCCceE
Confidence 0011223557789999997 58999998 456788
Q ss_pred Eeccccchhhhhhhhhhhhccc----CCCCCHHH----HHHHHHcccccCCCCcceeccCCCCCCCCceecccccCcccc
Q 042484 419 SISGTSMSGPYISGIAGLPKIL----HPDWSPAA----VQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLA 490 (620)
Q Consensus 419 ~~sGTSMAaP~VAG~aALl~~~----~P~~sp~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A 490 (620)
.++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+.... ...+.++.+.++|+|+||+.+|
T Consensus 270 ~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~A 344 (346)
T cd07475 270 YMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKA 344 (346)
T ss_pred eeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHh
Confidence 9999999999999999999997 79999877 788899999853211 1224567888999999999999
Q ss_pred CC
Q 042484 491 MD 492 (620)
Q Consensus 491 ~~ 492 (620)
++
T Consensus 345 v~ 346 (346)
T cd07475 345 IA 346 (346)
T ss_pred hC
Confidence 85
No 8
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.1e-43 Score=361.19 Aligned_cols=228 Identities=25% Similarity=0.285 Sum_probs=183.6
Q ss_pred ccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCC
Q 042484 69 IWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNG 148 (620)
Q Consensus 69 ~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~g 148 (620)
+|..+++|+||+|||||+|||++||+|.+..+.+....| ....+..|..+
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~------------------------------~~~~~~~~~~g 51 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYA------------------------------AAACQDGGASA 51 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCcc------------------------------ccCCCCCCCCC
Confidence 799999999999999999999999999864221110000 01123456789
Q ss_pred ChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-------
Q 042484 149 HGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL------- 221 (620)
Q Consensus 149 HGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl------- 221 (620)
|||||||||+|+. ...+.||||+|+|+.+|++......++..++++||++|++.|+|||||||
T Consensus 52 HGT~VAgii~g~~----------~~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~ 121 (267)
T cd07476 52 HGTHVASLIFGQP----------CSSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTG 121 (267)
T ss_pred cHHHHHHHHhcCC----------CCCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCC
Confidence 9999999999875 22478999999999999998762234578999999999999999999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCce
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKL 296 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 296 (620)
+..+..++.++|+++|+||||+|......+...|++|+||+...+
T Consensus 122 ~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 171 (267)
T cd07476 122 EADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------------------------ 171 (267)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------------------------
Confidence 456677788999999999999997665566667999999985421
Q ss_pred eeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCc
Q 042484 297 FTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHP 376 (620)
Q Consensus 297 ~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 376 (620)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCC----
Q 042484 377 VGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPD---- 443 (620)
Q Consensus 377 ~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~---- 443 (620)
+.++.||++||...+|||+| +++.|..++|||||||||||++|||+|++|.
T Consensus 172 ----------------~~~~~~s~~g~~~~~~~l~ApG~~i~~~~~~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~ 235 (267)
T cd07476 172 ----------------GLPLKFSNWGADYRKKGILAPGENILGAALGGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAP 235 (267)
T ss_pred ----------------CCeeeecCCCCCCCCceEEecCCCceeecCCCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCC
Confidence 11345777777666777776 5678999999999999999999999999887
Q ss_pred CCHHHHHHHHHcccccCCC
Q 042484 444 WSPAAVQSAIMTTATTQDN 462 (620)
Q Consensus 444 ~sp~~ik~~L~~TA~~~~~ 462 (620)
++|++||++|++||+++..
T Consensus 236 ~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 236 PDPLAVRRALLETATPCDP 254 (267)
T ss_pred CCHHHHHHHHHHhCccCCC
Confidence 9999999999999998854
No 9
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-43 Score=368.63 Aligned_cols=270 Identities=26% Similarity=0.322 Sum_probs=201.6
Q ss_pred ccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCC
Q 042484 67 NSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDK 146 (620)
Q Consensus 67 ~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~ 146 (620)
+.+|+.+++|+||+|||||+|||++||+|.+. +.+.... ..+.+ +..+.+. ......+..++.|.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~-~~~~~~~-----~~~~d-------~~~~~~~--~~~~~~~~~~~~d~ 67 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGC-FGPGCKV-----AGGYD-------FVGDDYD--GTNPPVPDDDPMDC 67 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcC-CCCCcee-----ccccc-------cCCcccc--cccCCCCCCCCCCC
Confidence 48999999999999999999999999999853 1111000 00000 1111110 00111223456778
Q ss_pred CCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-----
Q 042484 147 NGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----- 221 (620)
Q Consensus 147 ~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl----- 221 (620)
.+|||||||||+|...+ ..+.||||+|+|+.+|++... +....+.+++++++|++++++||||||
T Consensus 68 ~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~-~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~~ 137 (312)
T cd07489 68 QGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCS-GSTTEDTIIAAFLRAYEDGADVITASLGGPSG 137 (312)
T ss_pred CCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCC-CCCCHHHHHHHHHHHHhcCCCEEEeCCCcCCC
Confidence 99999999999988632 458899999999999999876 668888999999999999999999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCC---ccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCC
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDV---TLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPS 293 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~---t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 293 (620)
+.....++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 138 ~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------------------------- 188 (312)
T cd07489 138 WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------------------------- 188 (312)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------------------------
Confidence 456667788899999999999985422 1223357888888732
Q ss_pred CceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccC
Q 042484 294 DKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT 373 (620)
Q Consensus 294 ~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 373 (620)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeec-----------CCCcEEeccccchhhhhhhhhhhhcc
Q 042484 374 RHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKR-----------RIPFNSISGTSMSGPYISGIAGLPKI 439 (620)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~-----------~~~y~~~sGTSMAaP~VAG~aALl~~ 439 (620)
+.||+|||+ ..||||+|+ .+.|..++|||||||+|||++|||+|
T Consensus 189 ----------------------~~~s~~g~~~~~~~kpdv~ApG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~ 246 (312)
T cd07489 189 ----------------------SYFSSWGPTNELYLKPDVAAPGGNILSTYPLAGGGYAVLSGTSMATPYVAGAAALLIQ 246 (312)
T ss_pred ----------------------CCccCCCCCCCCCcCccEEcCCCCEEEeeeCCCCceEeeccHHHHHHHHHHHHHHHHH
Confidence 235666665 356777661 23488999999999999999999999
Q ss_pred cC-CCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCCCc
Q 042484 440 LH-PDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMDPG 494 (620)
Q Consensus 440 ~~-P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~~~ 494 (620)
++ |.+++.+||++|++||..+......-. ...+++...+|+|+||+.+|++..
T Consensus 247 ~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~--~~~~~~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 247 ARHGKLSPAELRDLLASTAKPLPWSDGTSA--LPDLAPVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred hcCCCCCHHHHHHHHHHhCccccccCCCcc--ccCCCCHhhcCcceeeHHHHhcCC
Confidence 99 999999999999999998754321100 011466789999999999999954
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.4e-42 Score=355.03 Aligned_cols=265 Identities=38% Similarity=0.544 Sum_probs=193.3
Q ss_pred CCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccc-ccc--CCCCCCCCCCCCCCCCChhh
Q 042484 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDY-AVH--KGPLNSSFYSARDKNGHGSH 152 (620)
Q Consensus 76 G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~-~~~--~~~~~~~~~~~~D~~gHGTH 152 (620)
|+||+|||||+|||++||+|.+..+ +.. .+.. +.+ +....+ ... ............|..+||||
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-~~~-~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~ 67 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-PND-KVKG----GYD-------FVDDDYDPMDTRPYPSPLGDASAGDATGHGTH 67 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-CCC-ceee----eeE-------CccCCCCcccccccccccccCCCCCCCCcHHH
Confidence 8999999999999999999984321 000 0010 000 000000 000 00000012234568899999
Q ss_pred hhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----------H
Q 042484 153 TLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----------V 222 (620)
Q Consensus 153 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl----------~ 222 (620)
|||+|+|...+ ...+.|+||+|+|+.+|++... +.+....++++|+++++++++|||||| +
T Consensus 68 vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~-~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~~~~~~ 138 (295)
T cd07474 68 VAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPG-GSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPD 138 (295)
T ss_pred HHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCC-CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHH
Confidence 99999988643 3468899999999999999865 568899999999999999999999999 5
Q ss_pred HHHHHHHHhcCcEEEEecCCCCCCCCccCC--CCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEE
Q 042484 223 AIGSFHAVQHGIVVVCSDGNEGLVDVTLQN--AAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFI 300 (620)
Q Consensus 223 ~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~--~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 300 (620)
..+...+.++|+++|+||||+|........ ..+++|+||++.....
T Consensus 139 ~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------------- 186 (295)
T cd07474 139 AIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------------- 186 (295)
T ss_pred HHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------------
Confidence 667778889999999999999976655533 4689999999541110
Q ss_pred EccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEE
Q 042484 301 RTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYI 380 (620)
Q Consensus 301 ~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i 380 (620)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceeecCCCCCceeeccCCC-CC---CCCCceee---------cC--CCcEEeccccchhhhhhhhhhhhcccCCCCC
Q 042484 381 KRPTTEFGAKPAPYMAALSSKG-PI---HITPEILK---------RR--IPFNSISGTSMSGPYISGIAGLPKILHPDWS 445 (620)
Q Consensus 381 ~~~~~~~~~~~~~~~a~FSS~G-P~---~~kPdi~a---------~~--~~y~~~sGTSMAaP~VAG~aALl~~~~P~~s 445 (620)
........|+++| |+ .+||||+| .. ..|..++|||||||+|||++|||+|++|+|+
T Consensus 187 ---------~~~~~~~~~~s~~~~~~~~~~kpdv~apG~~i~~~~~~~~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~ 257 (295)
T cd07474 187 ---------AEADTVGPSSSRGPPTSDSAIKPDIVAPGVDIMSTAPGSGTGYARMSGTSMAAPHVAGAAALLKQAHPDWS 257 (295)
T ss_pred ---------CCCCceeccCCCCCCCCCCCcCCCEECCcCceEeeccCCCCceEEeccHHHHHHHHHHHHHHHHhhCCCCC
Confidence 0001122344444 43 57999988 12 6789999999999999999999999999999
Q ss_pred HHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCcccc
Q 042484 446 PAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLA 490 (620)
Q Consensus 446 p~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A 490 (620)
+++||++|++||++....+. ...++..+|+|+||+.+|
T Consensus 258 ~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 258 PAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 99999999999998764332 123567899999999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=6.4e-42 Score=353.31 Aligned_cols=183 Identities=23% Similarity=0.305 Sum_probs=143.1
Q ss_pred CCCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeec
Q 042484 141 YSARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVS 220 (620)
Q Consensus 141 ~~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~S 220 (620)
..+.|..+|||||||||+|...+ ...+.||||+|+|+.+|++.. +.....++++||+||++.|++|||||
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n--------~~g~~GvAp~a~i~~~k~~~~--g~~~~~~i~~Ai~~a~~~g~~IiN~S 148 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDN--------GIGIDGVADNVKIMPLRIVPN--GDERDKDIANAIRYAVDNGAKVINMS 148 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCC--------CCceEEECCCCEEEEEEEecC--CCcCHHHHHHHHHHHHHCCCcEEEeC
Confidence 34567899999999999988643 234889999999999999864 34778899999999999999999999
Q ss_pred H----------HHHHHHHHHhcCcEEEEecCCCCCCCCcc---C--------CCCCceEEecccccCCcccceEEeCCCe
Q 042484 221 L----------VAIGSFHAVQHGIVVVCSDGNEGLVDVTL---Q--------NAAPRQIVVGASTMDRDLSNYVVLGNNK 279 (620)
Q Consensus 221 l----------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~---~--------~~ap~vitVga~~~~~~~~~~~~~g~~~ 279 (620)
| +..+...+.++|+++|+||||+|...... + ...+.+|+||++.....
T Consensus 149 ~G~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~~----------- 217 (291)
T cd07483 149 FGKSFSPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKYE----------- 217 (291)
T ss_pred CCCCCCCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccCC-----------
Confidence 9 44566678899999999999998532111 1 11355666666432110
Q ss_pred EEEEeeccCCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEe
Q 042484 280 RFKLISERAKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVI 359 (620)
Q Consensus 280 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i 359 (620)
T Consensus 218 -------------------------------------------------------------------------------- 217 (291)
T cd07483 218 -------------------------------------------------------------------------------- 217 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCcceeeecccCCCcEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhh
Q 042484 360 TFNDGYYNLFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYI 430 (620)
Q Consensus 360 ~~~~g~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~V 430 (620)
...++.||++|+. ++||+| +.+.|..++|||||||||
T Consensus 218 --------------------------------~~~~~~~Sn~G~~--~vdi~APG~~i~s~~~~~~~~~~sGTS~AaP~v 263 (291)
T cd07483 218 --------------------------------NNLVANFSNYGKK--NVDVFAPGERIYSTTPDNEYETDSGTSMAAPVV 263 (291)
T ss_pred --------------------------------cccccccCCCCCC--ceEEEeCCCCeEeccCcCCeEeeccHHHHHHHH
Confidence 1124567777763 456665 556899999999999999
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHcccc
Q 042484 431 SGIAGLPKILHPDWSPAAVQSAIMTTAT 458 (620)
Q Consensus 431 AG~aALl~~~~P~~sp~~ik~~L~~TA~ 458 (620)
||++|||+|++|+|++.|||++|++||.
T Consensus 264 aG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 264 SGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-41 Score=339.75 Aligned_cols=220 Identities=21% Similarity=0.276 Sum_probs=168.2
Q ss_pred cEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhc
Q 042484 79 IIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAG 158 (620)
Q Consensus 79 V~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaa 158 (620)
|+|||||||||++||+|.+.-.. ..+. ......|..+|||||||||+
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~-------------------------~~~~--------~~~~~~~~~~HGT~vAgiia 47 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA-------------------------RLFF--------AGPGAPAPSAHGTAVASLLA 47 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc-------------------------cccC--------CCCCCCCCCCCHHHHHHHHh
Confidence 78999999999999999753110 0000 01135678899999999999
Q ss_pred ccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCC--CCCCHHHHHHHHHHHHhCCCcEEeecH-------HHHHHHHH
Q 042484 159 GNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGM--GGCYDCDIIAAFDMAIHDGVDMLSVSL-------VAIGSFHA 229 (620)
Q Consensus 159 g~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~--g~~~~~~i~~ai~~a~~~gvdVIn~Sl-------~~~~~~~a 229 (620)
|+... ..||||+|+|+.+|++.... +.++.+++++||+||++.|++|||||| +..+..++
T Consensus 48 ~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~~~~l~~ai~~a 116 (239)
T cd05561 48 GAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPNALLAAAVAAA 116 (239)
T ss_pred CCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCHHHHHHHHHH
Confidence 88521 17999999999999998641 246788999999999999999999999 66777788
Q ss_pred HhcCcEEEEecCCCCCCC-CccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEEEccCCCcc
Q 042484 230 VQHGIVVVCSDGNEGLVD-VTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFIRTLDPKKV 308 (620)
Q Consensus 230 ~~~Gv~vV~AAGN~G~~~-~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (620)
.++|+++|+||||+|+.. ...+...+.+|+|++++.+..
T Consensus 117 ~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~~~---------------------------------------- 156 (239)
T cd05561 117 AARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDARGR---------------------------------------- 156 (239)
T ss_pred HHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCCCC----------------------------------------
Confidence 899999999999999653 234445689999998653321
Q ss_pred cccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEEeCCceeec
Q 042484 309 KGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPTTEFG 388 (620)
Q Consensus 309 ~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~~~~~ 388 (620)
T Consensus 157 -------------------------------------------------------------------------------- 156 (239)
T cd05561 157 -------------------------------------------------------------------------------- 156 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHccccc
Q 042484 389 AKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTATT 459 (620)
Q Consensus 389 ~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~~ 459 (620)
++.||++||. +||.| +.+.|..++|||||||||||++|||+|++| ++++|||++|++||++
T Consensus 157 ------~~~~s~~g~~---~di~ApG~~i~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~ 226 (239)
T cd05561 157 ------LYREANRGAH---VDFAAPGVDVWVAAPGGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKD 226 (239)
T ss_pred ------ccccCCCCCc---ceEEccccceecccCCCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhc
Confidence 1122223221 11111 356799999999999999999999999999 9999999999999988
Q ss_pred CCCCcceeccCCCCCCCCceeccc
Q 042484 460 QDNKKQQILDASFTEATPFSYGAG 483 (620)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~GaG 483 (620)
+.. +.....||||
T Consensus 227 ~g~-----------~~~d~~~G~G 239 (239)
T cd05561 227 LGP-----------PGRDPVFGYG 239 (239)
T ss_pred cCC-----------CCcCCCcCCC
Confidence 743 3345688887
No 13
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=8.2e-41 Score=352.71 Aligned_cols=197 Identities=24% Similarity=0.267 Sum_probs=151.8
Q ss_pred CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCC-CCHHHHHHHHHHHHhCCCcEEeecH-
Q 042484 144 RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGG-CYDCDIIAAFDMAIHDGVDMLSVSL- 221 (620)
Q Consensus 144 ~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~-~~~~~i~~ai~~a~~~gvdVIn~Sl- 221 (620)
.|+.+|||||||||||+..+ ...+.||||+|+|+.+|++....+. +....+++||++|++.|+|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47789999999999998532 3568899999999999998754222 3446799999999999999999999
Q ss_pred ----------HHHHHH-HHHhcCcEEEEecCCCCCCCCccCCC---CCceEEecccccCCcccceEEeCCCeEEEEeecc
Q 042484 222 ----------VAIGSF-HAVQHGIVVVCSDGNEGLVDVTLQNA---APRQIVVGASTMDRDLSNYVVLGNNKRFKLISER 287 (620)
Q Consensus 222 ----------~~~~~~-~a~~~Gv~vV~AAGN~G~~~~t~~~~---ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 287 (620)
+...+. .+.++|+++|+||||+|+..+++..| .+.+|+|||......+.....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~------------- 320 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYS------------- 320 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccccc-------------
Confidence 112222 34578999999999999987777655 478999999532211000000
Q ss_pred CCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCccee
Q 042484 288 AKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYN 367 (620)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 367 (620)
T Consensus 321 -------------------------------------------------------------------------------- 320 (412)
T cd04857 321 -------------------------------------------------------------------------------- 320 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeecC-----------CCcEEeccccchhhhhhhh
Q 042484 368 LFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKRR-----------IPFNSISGTSMSGPYISGI 433 (620)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~~-----------~~y~~~sGTSMAaP~VAG~ 433 (620)
......+.++.||||||+ .+||||+|++ ..|..|+|||||||||||+
T Consensus 321 -------------------~~~~~~~~~~~fSSrGP~~dG~~~pdI~APG~~I~s~p~~~~~~~~~~sGTSmAaP~VAG~ 381 (412)
T cd04857 321 -------------------LREKLPGNQYTWSSRGPTADGALGVSISAPGGAIASVPNWTLQGSQLMNGTSMSSPNACGG 381 (412)
T ss_pred -------------------cccccCCccccccccCCcccCCcCceEEeCCCcEEEcccCCCCCeEEecccHHHHHHHHHH
Confidence 000113457899999998 6899999932 4588999999999999999
Q ss_pred hhhhcc----cCCCCCHHHHHHHHHcccccC
Q 042484 434 AGLPKI----LHPDWSPAAVQSAIMTTATTQ 460 (620)
Q Consensus 434 aALl~~----~~P~~sp~~ik~~L~~TA~~~ 460 (620)
+|||++ .+|+|+|++||++|++||+++
T Consensus 382 aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 382 IALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred HHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 999974 578999999999999999863
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=9.1e-41 Score=340.63 Aligned_cols=226 Identities=28% Similarity=0.379 Sum_probs=174.3
Q ss_pred CCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhH
Q 042484 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLS 155 (620)
Q Consensus 76 G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAG 155 (620)
|+||+|||||||||++||+|.+. |++......+ ...| ++. .......+.|..+|||||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~~~~--~~~~-~~d---------~~~~~~~~~d~~~HGT~vag 60 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGGSAD--HDYN-WFD---------PVGNTPLPYDDNGHGTHTMG 60 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCCCcc--cccc-ccc---------CCCCCCCCCCCCCchhhhhh
Confidence 89999999999999999999863 1111100000 0000 110 01123456688899999999
Q ss_pred hhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh------------CCCcEEeecH--
Q 042484 156 RAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH------------DGVDMLSVSL-- 221 (620)
Q Consensus 156 iaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~------------~gvdVIn~Sl-- 221 (620)
||+|.... +...||||+|+|+.+|++... + +...+++++++++++ .++|||||||
T Consensus 61 ii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~ 129 (264)
T cd07481 61 TMVGNDGD---------GQQIGVAPGARWIACRALDRN-G-GNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGG 129 (264)
T ss_pred heeecCCC---------CCceEECCCCeEEEEEeecCC-C-CcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCc
Confidence 99987532 334899999999999999877 4 888999999999975 7899999999
Q ss_pred -------HHHHHHHHHhcCcEEEEecCCCCCCCCc---cCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCC
Q 042484 222 -------VAIGSFHAVQHGIVVVCSDGNEGLVDVT---LQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGL 291 (620)
Q Consensus 222 -------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t---~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~ 291 (620)
+..+...+.++|++||+||||+|..... .+...+++|+||+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------- 184 (264)
T cd07481 130 PSGDNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN------------------------- 184 (264)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-------------------------
Confidence 3445566778999999999999854433 23346889999884321
Q ss_pred CCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecc
Q 042484 292 PSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFT 371 (620)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 371 (620)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcc
Q 042484 372 FTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKI 439 (620)
Q Consensus 372 ~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~ 439 (620)
..++.||++||. +.||||+| +++.|..++|||||||+|||++|||+|
T Consensus 185 ---------------------~~~~~~S~~g~~~~~~~~~dv~ApG~~i~s~~~~~~~~~~~GTS~AaP~vaG~aAll~~ 243 (264)
T cd07481 185 ---------------------DVLADFSSRGPSTYGRIKPDISAPGVNIRSAVPGGGYGSSSGTSMAAPHVAGVAALLWS 243 (264)
T ss_pred ---------------------CCCccccCCCCCCCCCcCceEEECCCCeEEecCCCceEeeCcHHHHHHHHHHHHHHHHH
Confidence 234578999997 48999988 567889999999999999999999999
Q ss_pred cCCC--CCHHHHHHHHHcccc
Q 042484 440 LHPD--WSPAAVQSAIMTTAT 458 (620)
Q Consensus 440 ~~P~--~sp~~ik~~L~~TA~ 458 (620)
++|+ ++++|||++|++||+
T Consensus 244 ~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 244 ANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred hCCCCCCCHHHHHHHHHHhcC
Confidence 9999 999999999999985
No 15
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.3e-40 Score=341.25 Aligned_cols=177 Identities=23% Similarity=0.213 Sum_probs=128.9
Q ss_pred cccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCC
Q 042484 68 SIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKN 147 (620)
Q Consensus 68 ~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~ 147 (620)
.+|..+++|+||+|||||||||++||+|.+...... .. .+..++.. ............|..
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~-----------~~-------~~~~~~~~-~~~~~~~~~~~~~~~ 61 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG-----------YD-------PAVNGYNF-VPNVGDIDNDVSVGG 61 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC-----------cc-------cccCCccc-ccccCCcCCCCCCCC
Confidence 479999999999999999999999999986411100 00 00000000 000001123445778
Q ss_pred CChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH------
Q 042484 148 GHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL------ 221 (620)
Q Consensus 148 gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl------ 221 (620)
||||||||||+|+..+.....|.+ ...|+||+|+|+.+|++... +.+..+.++++|++|++.|++||||||
T Consensus 62 gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~-~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~ 138 (273)
T cd07485 62 GHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGR-YYVGDDAVAAAIVYAADNGAVILQNSWGGTGGG 138 (273)
T ss_pred CCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCC-CCccHHHHHHHHHHHHHcCCcEEEecCCCCCcc
Confidence 999999999999864322222221 34579999999999999887 568889999999999999999999999
Q ss_pred -----HHHHHHHHHhc-------CcEEEEecCCCCCCCCccCCCCCceEEecccccC
Q 042484 222 -----VAIGSFHAVQH-------GIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMD 266 (620)
Q Consensus 222 -----~~~~~~~a~~~-------Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~ 266 (620)
+..+...+.++ |+++|+||||+|......+...+.+|+|++++.+
T Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~ 195 (273)
T cd07485 139 IYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN 195 (273)
T ss_pred ccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC
Confidence 34455566677 9999999999997766656667999999997644
No 16
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.6e-40 Score=334.30 Aligned_cols=221 Identities=25% Similarity=0.327 Sum_probs=166.7
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCC-CCCCCCChhhhhHh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYS-ARDKNGHGSHTLSR 156 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~D~~gHGTHVAGi 156 (620)
||+|||||||||++||+|....... +.+...+ .++ ..+... ..|..+||||||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~-----~~~i~~~------------~~~-------~~~~~~~~~~~~~HGT~vagi 56 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFK-----NLRILGE------------YDF-------VDNSNNTNYTDDDHGTAVLST 56 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcccc-----CCceeee------------ecC-------ccCCCCCCCCCCCchhhhhee
Confidence 7999999999999999995211000 0000000 011 001111 36788999999999
Q ss_pred hcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCC-CCCCHHHHHHHHHHHHhCCCcEEeecH-------H------
Q 042484 157 AGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGM-GGCYDCDIIAAFDMAIHDGVDMLSVSL-------V------ 222 (620)
Q Consensus 157 aag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~~i~~ai~~a~~~gvdVIn~Sl-------~------ 222 (620)
|+|.. .+.+.||||+|+|+.+|+..... .......+++|+++|.+.|++|||||| .
T Consensus 57 ia~~~----------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~ 126 (261)
T cd07493 57 MAGYT----------PGVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTY 126 (261)
T ss_pred eeeCC----------CCCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccc
Confidence 99875 24578999999999999875431 224566789999999999999999999 1
Q ss_pred ----------HHHHHHHHhcCcEEEEecCCCCCCC---CccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCC
Q 042484 223 ----------AIGSFHAVQHGIVVVCSDGNEGLVD---VTLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAK 289 (620)
Q Consensus 223 ----------~~~~~~a~~~Gv~vV~AAGN~G~~~---~t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~ 289 (620)
..+...+.++|+++|+||||+|... ...+...+++|+|||...+
T Consensus 127 ~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~----------------------- 183 (261)
T cd07493 127 ADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN----------------------- 183 (261)
T ss_pred ccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC-----------------------
Confidence 2345567899999999999999652 2233346899999984311
Q ss_pred CCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeee
Q 042484 290 GLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLF 369 (620)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 369 (620)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee---------cCCCcEEeccccchhhhhhhhhhhh
Q 042484 370 FTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK---------RRIPFNSISGTSMSGPYISGIAGLP 437 (620)
Q Consensus 370 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl 437 (620)
+.++.||++||+ ++||||++ ..+.|..++|||||||+|||++|||
T Consensus 184 -----------------------~~~~~~S~~G~~~~~~~~pdi~a~G~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAll 240 (261)
T cd07493 184 -----------------------GNKASFSSIGPTADGRLKPDVMALGTGIYVINGDGNITYANGTSFSCPLIAGLIACL 240 (261)
T ss_pred -----------------------CCCCccCCcCCCCCCCcCCceEecCCCeEEEcCCCcEEeeCcHHHHHHHHHHHHHHH
Confidence 124568888886 57888888 4567899999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHcccc
Q 042484 438 KILHPDWSPAAVQSAIMTTAT 458 (620)
Q Consensus 438 ~~~~P~~sp~~ik~~L~~TA~ 458 (620)
+|++|+|++.|||++|++||+
T Consensus 241 ~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 241 WQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999985
No 17
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-39 Score=335.70 Aligned_cols=146 Identities=27% Similarity=0.342 Sum_probs=112.5
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCC
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSAR 144 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 144 (620)
++..+|+++++|+||+|||||||||..|| |...++ .+.... .. .......
T Consensus 9 ~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~~~~------------~~----------~~~~~~~ 58 (298)
T cd07494 9 NATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVRVVL------------AP----------GATDPAC 58 (298)
T ss_pred ChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cceeec------------CC----------CCCCCCC
Confidence 34699999999999999999999999998 764321 111100 00 0122356
Q ss_pred CCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---
Q 042484 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--- 221 (620)
Q Consensus 145 D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--- 221 (620)
|+.|||||||+++ .||||+|+|+.+|++.+ ..+.+++||+||++.++|||||||
T Consensus 59 D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~-----~~~~~~~ai~~a~~~g~dVIn~SlG~~ 115 (298)
T cd07494 59 DENGHGTGESANL------------------FAIAPGAQFIGVKLGGP-----DLVNSVGAFKKAISLSPDIISNSWGYD 115 (298)
T ss_pred CCCCcchheeece------------------eEeCCCCeEEEEEccCC-----CcHHHHHHHHHHHhcCCCEEEeecccC
Confidence 7889999998764 38999999999999753 456789999999999999999999
Q ss_pred ------------------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccC
Q 042484 222 ------------------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMD 266 (620)
Q Consensus 222 ------------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~ 266 (620)
+..++.+|.++|++||+||||++. ..+...|++|+||+++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~ 175 (298)
T cd07494 116 LRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVD 175 (298)
T ss_pred CCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEecc
Confidence 123445677999999999999974 345667999999997543
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-39 Score=328.36 Aligned_cols=225 Identities=30% Similarity=0.412 Sum_probs=178.4
Q ss_pred CCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhH
Q 042484 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLS 155 (620)
Q Consensus 76 G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAG 155 (620)
|+||+|+|||+|||++||+|.+..... +. +.. .........|..+|||||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~----~~----------------~~~--------~~~~~~~~~d~~~HGT~vAg 52 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRF----AD----------------FVN--------TVNGRTTPYDDNGHGTHVAG 52 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccccc----cc----------------ccc--------cccCCCCCCCCCCchHHHHH
Confidence 899999999999999999998631100 00 000 00123345677899999999
Q ss_pred hhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC----CCcEEeecH----------
Q 042484 156 RAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD----GVDMLSVSL---------- 221 (620)
Q Consensus 156 iaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~----gvdVIn~Sl---------- 221 (620)
||+|...+. ...+.||||+|+|+.+|++... +....+++++||+++++. +++||||||
T Consensus 53 iiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~-~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~ 124 (264)
T cd07487 53 IIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDS-GSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGE 124 (264)
T ss_pred HHhcCCccc-------CCceEEECCCCeEEEEEeecCC-CCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCC
Confidence 999986431 3558999999999999999887 677889999999999998 999999999
Q ss_pred --HHHHHHHHHhcCcEEEEecCCCCCCCCccC--CCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCcee
Q 042484 222 --VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQ--NAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLF 297 (620)
Q Consensus 222 --~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~--~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 297 (620)
+..+...+.++|+++|+||||++....++. ...+.+|+||+...+...
T Consensus 125 ~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~---------------------------- 176 (264)
T cd07487 125 DPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH---------------------------- 176 (264)
T ss_pred CHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC----------------------------
Confidence 456677788999999999999997665433 346899999995433210
Q ss_pred eEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcE
Q 042484 298 TFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPV 377 (620)
Q Consensus 298 ~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 377 (620)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCCceeecCCCCCceeeccCCCCC---CCCCceee------------------cCCCcEEeccccchhhhhhhhhhh
Q 042484 378 GYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK------------------RRIPFNSISGTSMSGPYISGIAGL 436 (620)
Q Consensus 378 ~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a------------------~~~~y~~~sGTSMAaP~VAG~aAL 436 (620)
...++.||++||+ +.||||+| ..+.|..++|||||||+|||++||
T Consensus 177 --------------~~~~~~~s~~G~~~~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al 242 (264)
T cd07487 177 --------------DDGISYFSSRGPTGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHVSGAIAL 242 (264)
T ss_pred --------------CccccccccCCCCCCCCcCCCEEccccceEeccccccccCCCCCCceEeccccchHHHHHHHHHHH
Confidence 0224578888886 57888887 234678899999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHcccc
Q 042484 437 PKILHPDWSPAAVQSAIMTTAT 458 (620)
Q Consensus 437 l~~~~P~~sp~~ik~~L~~TA~ 458 (620)
|+|++|++++.+||++|++||+
T Consensus 243 l~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 243 LLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999984
No 19
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=9.2e-39 Score=325.31 Aligned_cols=161 Identities=27% Similarity=0.354 Sum_probs=129.2
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARD 145 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D 145 (620)
...+|..+ +|+||+|||||+|||++||+|....+ ..++. .......+.|
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~-------------------------~~~~~-----~~~~~~~~~d 66 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKF-------------------------VLGYD-----FVDNDSDAMD 66 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCCc-------------------------cccee-----ccCCCCCCCC
Confidence 35889988 99999999999999999999853211 00110 0001223567
Q ss_pred CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 146 KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 146 ~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
..+|||||||||++...+ ...+.|+||+|+|+.+|++... +.+...+++++|+++++.+++||||||
T Consensus 67 ~~~HGT~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~-~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~ 137 (260)
T cd07484 67 DNGHGTHVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDAN-GSGSLADIANGIRYAADKGAKVINLSLGGGL 137 (260)
T ss_pred CCCcHHHHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCC-CCcCHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 889999999999987532 2457899999999999999877 668889999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccC
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMD 266 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~ 266 (620)
+......+.++|++||+||||+|......+...+++|+||+.+.+
T Consensus 138 ~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~ 186 (260)
T cd07484 138 GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD 186 (260)
T ss_pred CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC
Confidence 566667778999999999999998776777778999999996543
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.6e-39 Score=333.54 Aligned_cols=228 Identities=22% Similarity=0.207 Sum_probs=166.1
Q ss_pred EEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhcc
Q 042484 80 IIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGG 159 (620)
Q Consensus 80 ~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaag 159 (620)
+|||||||||..||+|.+.-. ... .+ ......+.|..||||||||||++
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~------------~~~------------~~-------~~~~~~~~d~~gHGT~vAgiia~ 50 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALA------------EDD------------LD-------SDEPGWTADDLGHGTAVAGLALY 50 (291)
T ss_pred EEEEecCCCCCCChhhhhhhc------------ccc------------cc-------ccCCCCcCCCCCChHHHHHHHHc
Confidence 799999999999999975200 000 00 00011156899999999999997
Q ss_pred cCCCCCceeccCCceeeeecCCCeEEEEEeeeCCC---CCCCHHHHHHHHHHHHhCC---CcEEeecH------------
Q 042484 160 NFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGM---GGCYDCDIIAAFDMAIHDG---VDMLSVSL------------ 221 (620)
Q Consensus 160 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~---g~~~~~~i~~ai~~a~~~g---vdVIn~Sl------------ 221 (620)
.... .....|+||+|+|+.+|++.... +..+.+++++||+++++.. ++||||||
T Consensus 51 ~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~ 122 (291)
T cd04847 51 GDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPS 122 (291)
T ss_pred Cccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCC
Confidence 6522 23567999999999999998761 2456789999999999853 48999999
Q ss_pred -HHHHH-HHHHhcCcEEEEecCCCCCCCCcc------------CCCCCceEEecccccCCcccceEEeCCCeEEEEeecc
Q 042484 222 -VAIGS-FHAVQHGIVVVCSDGNEGLVDVTL------------QNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISER 287 (620)
Q Consensus 222 -~~~~~-~~a~~~Gv~vV~AAGN~G~~~~t~------------~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~ 287 (620)
+.... ..+.++|++||+||||+|+..... +..++++|+|||.+.+........ +
T Consensus 123 ~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~------------~ 190 (291)
T cd04847 123 SWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR------------Y 190 (291)
T ss_pred cHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc------------c
Confidence 12233 235689999999999999765432 123578999999764432100000 0
Q ss_pred CCCCCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCccee
Q 042484 288 AKGLPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYN 367 (620)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 367 (620)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeec---------------------------CCCc
Q 042484 368 LFFTFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKR---------------------------RIPF 417 (620)
Q Consensus 368 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~---------------------------~~~y 417 (620)
+.......+.||||||. .+||||+|+ ...|
T Consensus 191 --------------------~~~~~~~~~~fs~~Gp~~~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T cd04847 191 --------------------SAVGPAPAGATTSSGPGSPGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGF 250 (291)
T ss_pred --------------------cccccccCCCccccCCCCCCCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcc
Confidence 00000112239999997 689999981 3568
Q ss_pred EEeccccchhhhhhhhhhhhcccCCCCCHHHHHHHHHcccc
Q 042484 418 NSISGTSMSGPYISGIAGLPKILHPDWSPAAVQSAIMTTAT 458 (620)
Q Consensus 418 ~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~~L~~TA~ 458 (620)
..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 251 ~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 251 VTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred cccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 89999999999999999999999999999999999999984
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-38 Score=321.60 Aligned_cols=152 Identities=30% Similarity=0.374 Sum_probs=114.5
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRA 157 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGia 157 (620)
||+|||||||||++||+|.+.-. .|+. |.. ..........|..+|||||||||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~-----~~~~---------------~~~-------~~~~~~~~~~d~~~HGT~vAgii 53 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA-----QWAD---------------FDE-------NRRISATEVFDAGGHGTHVSGTI 53 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC-----Ccee---------------ccC-------CCCCCCCCCCCCCCcHHHHHHHH
Confidence 79999999999999999975310 0000 000 00112334567889999999999
Q ss_pred cccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---------HHHHHHH
Q 042484 158 GGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---------VAIGSFH 228 (620)
Q Consensus 158 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---------~~~~~~~ 228 (620)
+|+.. ++...||||+|+|+.+|++... + +..++++++|+++++.+++|||||| +......
T Consensus 54 a~~~~---------~~~~~GvAp~a~i~~~~v~~~~-~-~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~ 122 (254)
T cd07490 54 GGGGA---------KGVYIGVAPEADLLHGKVLDDG-G-GSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEA 122 (254)
T ss_pred hcCCC---------CCCEEEECCCCEEEEEEEecCC-C-CcHHHHHHHHHHHHhCCCCEEEECCCcCCCCCcHHHHHHHH
Confidence 99863 2456799999999999999877 4 8889999999999999999999999 2222223
Q ss_pred HH-hcCcEEEEecCCCCCCCCccCCCCCceEEecccccCC
Q 042484 229 AV-QHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDR 267 (620)
Q Consensus 229 a~-~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~ 267 (620)
.. ++|+++|+||||+|......+...+++|+||+++.+.
T Consensus 123 ~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~ 162 (254)
T cd07490 123 LSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDD 162 (254)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccC
Confidence 32 3699999999999977555555579999999976443
No 22
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-38 Score=320.96 Aligned_cols=233 Identities=25% Similarity=0.330 Sum_probs=170.7
Q ss_pred CCcEEEEeccccCCCCcCcCCCCCCCCCCCccee---eecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhh
Q 042484 77 EDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGI---CQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHT 153 (620)
Q Consensus 77 ~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~---~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHV 153 (620)
+||+|||||||||++||+|.+. .|... +..+.+ ..++.+..+-+. ........++.|..+|||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~d~~~HGT~v 69 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGID--DDGNGYVDDIYG---WNFVNNDNDPMDDNGHGTHV 69 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcc--cCCCCcccCCCc---ccccCCCCCCCCCCCcHHHH
Confidence 7999999999999999999864 22211 111111 001111111110 01112345567889999999
Q ss_pred hHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH--------HHHH
Q 042484 154 LSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--------VAIG 225 (620)
Q Consensus 154 AGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--------~~~~ 225 (620)
||||+|...+ ...+.||||+|+|+.+|++... +.++..+++++|+++++.+++|||+|| +..+
T Consensus 70 a~ii~~~~~~--------~~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~~~~~~~~ 140 (259)
T cd07473 70 AGIIGAVGNN--------GIGIAGVAWNVKIMPLKFLGAD-GSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDA 140 (259)
T ss_pred HHHHHCcCCC--------CCceEEeCCCCEEEEEEEeCCC-CCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCCCHHHHHH
Confidence 9999988643 2447899999999999999887 668899999999999999999999999 5667
Q ss_pred HHHHHhcCcEEEEecCCCCCCC---CccCC--CCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEE
Q 042484 226 SFHAVQHGIVVVCSDGNEGLVD---VTLQN--AAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFI 300 (620)
Q Consensus 226 ~~~a~~~Gv~vV~AAGN~G~~~---~t~~~--~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~ 300 (620)
...+.++|+++|+||||+|... ...+. ..+++|+||+.+.+..
T Consensus 141 ~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~~~-------------------------------- 188 (259)
T cd07473 141 IARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSNDA-------------------------------- 188 (259)
T ss_pred HHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCCCC--------------------------------
Confidence 7788899999999999998652 22222 2478999998653321
Q ss_pred EccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEE
Q 042484 301 RTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYI 380 (620)
Q Consensus 301 ~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i 380 (620)
T Consensus 189 -------------------------------------------------------------------------------- 188 (259)
T cd07473 189 -------------------------------------------------------------------------------- 188 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCceeecCCCCCceeeccCCCCCCCCCceee---------cCCCcEEeccccchhhhhhhhhhhhcccCCCCCHHHHHH
Q 042484 381 KRPTTEFGAKPAPYMAALSSKGPIHITPEILK---------RRIPFNSISGTSMSGPYISGIAGLPKILHPDWSPAAVQS 451 (620)
Q Consensus 381 ~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~ 451 (620)
.+.||++||. +||+.| ..+.|..++|||||||+|||++|||+|++|.+++++||+
T Consensus 189 --------------~~~~s~~g~~--~~~~~apG~~~~~~~~~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~ 252 (259)
T cd07473 189 --------------LASFSNYGKK--TVDLAAPGVDILSTSPGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKD 252 (259)
T ss_pred --------------cCcccCCCCC--CcEEEeccCCeEeccCCCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 1224444442 223332 456789999999999999999999999999999999999
Q ss_pred HHHcccc
Q 042484 452 AIMTTAT 458 (620)
Q Consensus 452 ~L~~TA~ 458 (620)
+|++||+
T Consensus 253 ~L~~tA~ 259 (259)
T cd07473 253 AILSSAD 259 (259)
T ss_pred HHHHhCC
Confidence 9999984
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.9e-38 Score=324.90 Aligned_cols=176 Identities=18% Similarity=0.171 Sum_probs=118.9
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCccee-e-ecC--CC-CCcccCccccccccccCCCCCCCCCCCCCCCCChhh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGI-C-QND--KD-ARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSH 152 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~-~-~~~--~~-~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTH 152 (620)
||+|||||||||++||+|.+.-.... ...... . ..+ .+ .......|+...+ ............+..+||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~-d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~HGT~ 76 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGY-DFISDPAIANDGDGRDSDPTDPGDWVTGDD---VPPGGFCGSGVSPSSWHGTH 76 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCc-ccccCcccccCCCCCCCCCCCccccccccc---ccccccccCCCCCCCCCHHH
Confidence 79999999999999999986421000 000000 0 000 00 0000000111111 00011123345678899999
Q ss_pred hhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHH----------hCCCcEEeecH-
Q 042484 153 TLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI----------HDGVDMLSVSL- 221 (620)
Q Consensus 153 VAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~----------~~gvdVIn~Sl- 221 (620)
|||||+|...+ ...+.||||+|+|+.+|++... + .+.+++++|++|++ .++++||||||
T Consensus 77 vAgiiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~-~-~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G 146 (285)
T cd07496 77 VAGTIAAVTNN--------GVGVAGVAWGARILPVRVLGKC-G-GTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLG 146 (285)
T ss_pred HHHHHhCcCCC--------CCCceeecCCCeEEEEEEecCC-C-CcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCC
Confidence 99999998642 2457899999999999999876 4 48889999999998 46789999999
Q ss_pred --------HHHHHHHHHhcCcEEEEecCCCCCCC-CccCCCCCceEEecccccCC
Q 042484 222 --------VAIGSFHAVQHGIVVVCSDGNEGLVD-VTLQNAAPRQIVVGASTMDR 267 (620)
Q Consensus 222 --------~~~~~~~a~~~Gv~vV~AAGN~G~~~-~t~~~~ap~vitVga~~~~~ 267 (620)
+..+...+.++|++||+||||+|... ...+...+.+|+||++..+.
T Consensus 147 ~~~~~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~~ 201 (285)
T cd07496 147 GDGACSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLRG 201 (285)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCCC
Confidence 45566778899999999999999765 33445578999999976554
No 24
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=2.3e-38 Score=321.42 Aligned_cols=215 Identities=30% Similarity=0.401 Sum_probs=168.9
Q ss_pred ccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCC
Q 042484 69 IWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNG 148 (620)
Q Consensus 69 ~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~g 148 (620)
.|..+++|+||+|||||+||+++||+|.+.. ..+. .+ . ...+..|..+
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~------------~~~~------------~~-~-------~~~~~~d~~~ 64 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRA------------IWGA------------DF-V-------GGDPDSDCNG 64 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCe------------eeee------------ec-C-------CCCCCCCCCc
Confidence 7778899999999999999999999997531 0000 00 0 0111567889
Q ss_pred ChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC-----CCcEEeecH--
Q 042484 149 HGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD-----GVDMLSVSL-- 221 (620)
Q Consensus 149 HGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~-----gvdVIn~Sl-- 221 (620)
|||||||||+++. .||||+|+|+.+|++... +....+.++++++++++. +++||||||
T Consensus 65 HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~-~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~ 129 (255)
T cd04077 65 HGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCN-GSGTLSGIIAGLEWVANDATKRGKPAVANMSLGG 129 (255)
T ss_pred cHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCC-CCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCC
Confidence 9999999999652 599999999999999887 668889999999999987 489999999
Q ss_pred -----HHHHHHHHHhcCcEEEEecCCCCCCCC-ccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCc
Q 042484 222 -----VAIGSFHAVQHGIVVVCSDGNEGLVDV-TLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDK 295 (620)
Q Consensus 222 -----~~~~~~~a~~~Gv~vV~AAGN~G~~~~-t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 295 (620)
+..+...+.++|+++|+||||+|.... ..+...+++|+||+.+.+..
T Consensus 130 ~~~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~~~--------------------------- 182 (255)
T cd04077 130 GASTALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSDDA--------------------------- 182 (255)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCCCC---------------------------
Confidence 666777888999999999999996543 33445689999999654332
Q ss_pred eeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCC
Q 042484 296 LFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRH 375 (620)
Q Consensus 296 ~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 375 (620)
T Consensus 183 -------------------------------------------------------------------------------- 182 (255)
T cd04077 183 -------------------------------------------------------------------------------- 182 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeCCceeecCCCCCceeeccCCCCCCCCCceee-----------cCCCcEEeccccchhhhhhhhhhhhcccCCCC
Q 042484 376 PVGYIKRPTTEFGAKPAPYMAALSSKGPIHITPEILK-----------RRIPFNSISGTSMSGPYISGIAGLPKILHPDW 444 (620)
Q Consensus 376 ~~~~i~~~~~~~~~~~~~~~a~FSS~GP~~~kPdi~a-----------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~~ 444 (620)
.+.||++||.. |++| ..+.|..++|||||||+|||++|||+|++|++
T Consensus 183 -------------------~~~~S~~g~~~---~i~apG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~ 240 (255)
T cd04077 183 -------------------RASFSNYGSCV---DIFAPGVDILSAWIGSDTATATLSGTSMAAPHVAGLAAYLLSLGPDL 240 (255)
T ss_pred -------------------ccCcccCCCCC---cEEeCCCCeEecccCCCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCC
Confidence 12233333321 1221 14678999999999999999999999999999
Q ss_pred CHHHHHHHHHccccc
Q 042484 445 SPAAVQSAIMTTATT 459 (620)
Q Consensus 445 sp~~ik~~L~~TA~~ 459 (620)
+++|||++|++||++
T Consensus 241 ~~~~v~~~L~~tA~~ 255 (255)
T cd04077 241 SPAEVKARLLNLATK 255 (255)
T ss_pred CHHHHHHHHHhhccC
Confidence 999999999999974
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-37 Score=313.25 Aligned_cols=151 Identities=23% Similarity=0.245 Sum_probs=117.0
Q ss_pred cEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhc
Q 042484 79 IIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAG 158 (620)
Q Consensus 79 V~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaa 158 (620)
|+|||||+|||++||+|.+.. +. ..++. .......+.|..+|||||||||+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~--~~----------------------~~~~~-----~~~~~~~~~~~~~HGT~vAgiia 51 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP--KL----------------------VPGWN-----FVSNNDPTSDIDGHGTACAGVAA 51 (242)
T ss_pred CEEEEecCCCCCCChhhccCc--Cc----------------------cCCcc-----ccCCCCCCCCCCCCHHHHHHHHH
Confidence 789999999999999998620 00 00110 00011245678899999999999
Q ss_pred ccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH------------HHHHH
Q 042484 159 GNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL------------VAIGS 226 (620)
Q Consensus 159 g~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl------------~~~~~ 226 (620)
|+..+ ...+.||||+|+|+.+|++... +.+...++.++++++++.+++|||||| +..+.
T Consensus 52 g~~~~--------~~~~~Gvap~a~i~~~~~~~~~-~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~ 122 (242)
T cd07498 52 AVGNN--------GLGVAGVAPGAKLMPVRIADSL-GYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAA 122 (242)
T ss_pred hccCC--------CceeEeECCCCEEEEEEEECCC-CCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHH
Confidence 88632 3457899999999999999877 567889999999999999999999999 33444
Q ss_pred HHHHh-cCcEEEEecCCCCCCCCccCCCCCceEEecccccCC
Q 042484 227 FHAVQ-HGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMDR 267 (620)
Q Consensus 227 ~~a~~-~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~~ 267 (620)
..+.. +|+++|+||||+|......+...+++|+||+.+.+.
T Consensus 123 ~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~~ 164 (242)
T cd07498 123 TYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSND 164 (242)
T ss_pred HHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCCC
Confidence 55667 999999999999976655566689999999976443
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-37 Score=321.38 Aligned_cols=134 Identities=25% Similarity=0.353 Sum_probs=103.5
Q ss_pred cCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChh
Q 042484 72 KARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGS 151 (620)
Q Consensus 72 ~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 151 (620)
.+++|+||+|||||||||.+||+|.+.... ..+| .+...+.|..||||
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~------------------------~~~~--------~~~~~~~d~~gHGT 50 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDIT------------------------TKSF--------VGGEDVQDGHGHGT 50 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCccc------------------------Cccc--------CCCCCCCCCCCcHH
Confidence 568999999999999999999999853110 0011 00112467889999
Q ss_pred hhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-H--------
Q 042484 152 HTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL-V-------- 222 (620)
Q Consensus 152 HVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl-~-------- 222 (620)
||||||+|+..+ +...||||+|+|+.+|++... +.+....+++||+||++.|++|||||| .
T Consensus 51 ~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~-~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~ 120 (297)
T cd07480 51 HCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGD-GGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQ 120 (297)
T ss_pred HHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCC-CCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccc
Confidence 999999988632 445799999999999999876 567788899999999999999999999 1
Q ss_pred ------------HHHHHHH---------------HhcCcEEEEecCCCCCCC
Q 042484 223 ------------AIGSFHA---------------VQHGIVVVCSDGNEGLVD 247 (620)
Q Consensus 223 ------------~~~~~~a---------------~~~Gv~vV~AAGN~G~~~ 247 (620)
......+ ..+|+++|+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 121 GWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred cCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 0111122 578999999999998543
No 27
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.1e-37 Score=322.80 Aligned_cols=248 Identities=25% Similarity=0.258 Sum_probs=175.5
Q ss_pred cCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChh
Q 042484 72 KARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGS 151 (620)
Q Consensus 72 ~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGT 151 (620)
++++|+||+|||||||||++||+|.+..... . ...++...... .......|..+|||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~------------~---~~~~~~~~~~~--------~~~~~~~d~~~HGT 58 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNK------------T---NLFHRKIVRYD--------SLSDTKDDVDGHGT 58 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCc------------C---ccCcccEEEee--------ccCCCCCCCCCCcc
Confidence 5789999999999999999999997642100 0 00000000000 00112227899999
Q ss_pred hhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----------
Q 042484 152 HTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL---------- 221 (620)
Q Consensus 152 HVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl---------- 221 (620)
||||||+|....... ...+.||||+|+|+.+|++..........++..+++++.+.+++||||||
T Consensus 59 ~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~~~~ 133 (293)
T cd04842 59 HVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTL 133 (293)
T ss_pred hhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccccch
Confidence 999999998743210 11579999999999999988762135667789999999999999999999
Q ss_pred HHHHHHHHH-h-cCcEEEEecCCCCCCCC---ccCCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCce
Q 042484 222 VAIGSFHAV-Q-HGIVVVCSDGNEGLVDV---TLQNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKL 296 (620)
Q Consensus 222 ~~~~~~~a~-~-~Gv~vV~AAGN~G~~~~---t~~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 296 (620)
...+..++. + +|+++|+||||+|.... ..+...+++|+|||++.+.......
T Consensus 134 ~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~~----------------------- 190 (293)
T cd04842 134 LARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGEG----------------------- 190 (293)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccccc-----------------------
Confidence 122332222 3 89999999999996654 3444579999999976443210000
Q ss_pred eeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCc
Q 042484 297 FTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHP 376 (620)
Q Consensus 297 ~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 376 (620)
...
T Consensus 191 -----------------------------------------------~~~------------------------------ 193 (293)
T cd04842 191 -----------------------------------------------GLG------------------------------ 193 (293)
T ss_pred -----------------------------------------------ccc------------------------------
Confidence 000
Q ss_pred EEEEeCCceeecCCCCCceeeccCCCCC---CCCCceee-------c-----------CCCcEEeccccchhhhhhhhhh
Q 042484 377 VGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILK-------R-----------RIPFNSISGTSMSGPYISGIAG 435 (620)
Q Consensus 377 ~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a-------~-----------~~~y~~~sGTSMAaP~VAG~aA 435 (620)
.......++.||++||+ +.||||+| . ...|...+|||||||+|||++|
T Consensus 194 -----------~~~~~~~~~~~S~~G~~~~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aA 262 (293)
T cd04842 194 -----------QSDNSDTVASFSSRGPTYDGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAA 262 (293)
T ss_pred -----------ccCCCCccccccCcCCCCCCCcCCCEECCCCCeEeccCCCCCCCCCChhheeecCcHHHHHHHHHHHHH
Confidence 00113457789999997 67999998 1 2467889999999999999999
Q ss_pred hhcccC-----C---CCCHHHHHHHHHcccc
Q 042484 436 LPKILH-----P---DWSPAAVQSAIMTTAT 458 (620)
Q Consensus 436 Ll~~~~-----P---~~sp~~ik~~L~~TA~ 458 (620)
||+|++ | .+++.++|++|++||+
T Consensus 263 ll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 263 LLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred HHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999985 4 6677899999999985
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-37 Score=318.21 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=106.1
Q ss_pred CccccccC-CCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCC
Q 042484 66 PNSIWEKA-RYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSAR 144 (620)
Q Consensus 66 ~~~~~~~~-~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 144 (620)
+..+|+.. ..|+||+|+|||+|||.+||+|.++.... + ....+.
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~--------------------------~---------~~~~~~ 48 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL--------------------------I---------SGLTDQ 48 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc--------------------------c---------CCCCCC
Confidence 56899874 45999999999999999999998641100 0 001156
Q ss_pred CCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh----CCCcEEeec
Q 042484 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH----DGVDMLSVS 220 (620)
Q Consensus 145 D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~----~gvdVIn~S 220 (620)
|+.+|||||||||+|..+ ...+.||||+|+|+.+|++. .++++++|++|++ .++.+||||
T Consensus 49 d~~gHGT~VAGiIaa~~n---------~~G~~GvAp~a~l~~i~v~~-------~~~~~~ai~~A~~~~~~~~v~~in~s 112 (277)
T cd04843 49 ADSDHGTAVLGIIVAKDN---------GIGVTGIAHGAQAAVVSSTR-------VSNTADAILDAADYLSPGDVILLEMQ 112 (277)
T ss_pred CCCCCcchhheeeeeecC---------CCceeeeccCCEEEEEEecC-------CCCHHHHHHHHHhccCCCCEEEEEcc
Confidence 788999999999998741 23478999999999999975 1234555666655 456678998
Q ss_pred H-----------------HHHHHHHHHhcCcEEEEecCCCCCCCCccC----------C---CCCceEEeccccc
Q 042484 221 L-----------------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQ----------N---AAPRQIVVGASTM 265 (620)
Q Consensus 221 l-----------------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~----------~---~ap~vitVga~~~ 265 (620)
| +..++.++.++|+++|+||||++....... . ..+++|+|||++.
T Consensus 113 ~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~ 187 (277)
T cd04843 113 TGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSS 187 (277)
T ss_pred ccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccC
Confidence 7 123556777999999999999985421111 1 1357888888653
No 29
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.6e-37 Score=320.23 Aligned_cols=160 Identities=23% Similarity=0.304 Sum_probs=112.6
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCcccccc-ccccCCCCCCCCCCCCCCCCChhhhhHh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQD-YAVHKGPLNSSFYSARDKNGHGSHTLSR 156 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~-~~~~~~~~~~~~~~~~D~~gHGTHVAGi 156 (620)
.|+|||||||||++||+|.+.-. .. .+- +...+ +...............|..||||||||+
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~-~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 62 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS-SY---SKN--------------LVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQ 62 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc-cc---ccc--------------cccCCCcCCccccccCCCCcCCCCCCcHhHHHHH
Confidence 48999999999999999985210 00 000 00000 0000000111234456789999999999
Q ss_pred hcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---------------
Q 042484 157 AGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--------------- 221 (620)
Q Consensus 157 aag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--------------- 221 (620)
|+|+. ...||||+|+|+.+|+++.. +.....+++++|++|++++++||||||
T Consensus 63 ia~~~------------~~~GvAp~a~i~~~~v~~~~-~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~ 129 (294)
T cd07482 63 IAANG------------NIKGVAPGIGIVSYRVFGSC-GSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDV 129 (294)
T ss_pred HhcCC------------CCceeCCCCEEEEEEeecCC-CCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchh
Confidence 99864 13499999999999999877 556889999999999999999999999
Q ss_pred ----HHHHHHHHHhcCcEEEEecCCCCCCCC----------------------ccCCCCCceEEecccccCCc
Q 042484 222 ----VAIGSFHAVQHGIVVVCSDGNEGLVDV----------------------TLQNAAPRQIVVGASTMDRD 268 (620)
Q Consensus 222 ----~~~~~~~a~~~Gv~vV~AAGN~G~~~~----------------------t~~~~ap~vitVga~~~~~~ 268 (620)
+..+...+.++|++||+||||+|.... ..+...+++|+|||++.+..
T Consensus 130 ~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~~~ 202 (294)
T cd07482 130 EYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNNGN 202 (294)
T ss_pred hhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCCCCC
Confidence 122344566899999999999996431 12223589999999765543
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=5.8e-37 Score=306.01 Aligned_cols=149 Identities=26% Similarity=0.341 Sum_probs=118.4
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRA 157 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGia 157 (620)
||+|||||+||+++||+|.+.-. .+ ..+. ........|..+|||||||||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~------------~~------------~~~~------~~~~~~~~~~~~HGT~vA~ii 50 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIV------------GG------------ANFT------GDDNNDYQDGNGHGTHVAGII 50 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcccc------------Cc------------cccc------CCCCCCCCCCCCCHHHHHHHH
Confidence 79999999999999999985310 00 0010 000134567889999999999
Q ss_pred cccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH--------HHHHHHHH
Q 042484 158 GGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--------VAIGSFHA 229 (620)
Q Consensus 158 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--------~~~~~~~a 229 (620)
++... ...+.|+||+|+|+.+|++... +.+...++++++++|++.|++|||||| +..+...+
T Consensus 51 ~~~~~---------~~~~~giap~a~i~~~~~~~~~-~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~a 120 (229)
T cd07477 51 AALDN---------GVGVVGVAPEADLYAVKVLNDD-GSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIKKA 120 (229)
T ss_pred hcccC---------CCccEeeCCCCEEEEEEEECCC-CCcCHHHHHHHHHHHHHCCCCEEEECCccCCCCHHHHHHHHHH
Confidence 98863 2357899999999999999887 667788999999999999999999999 55666778
Q ss_pred HhcCcEEEEecCCCCCCCCcc--CCCCCceEEecccccC
Q 042484 230 VQHGIVVVCSDGNEGLVDVTL--QNAAPRQIVVGASTMD 266 (620)
Q Consensus 230 ~~~Gv~vV~AAGN~G~~~~t~--~~~ap~vitVga~~~~ 266 (620)
.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 121 ~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~ 159 (229)
T cd07477 121 YAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN 159 (229)
T ss_pred HHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC
Confidence 899999999999999765554 5567999999997644
No 31
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=3.9e-37 Score=319.52 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=114.3
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCC-
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSA- 143 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~- 143 (620)
....+|+.+++|+||+|+|||||||+.||+|.+...... .|. |... .....+
T Consensus 27 ~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~~--~~~----------------~~~~---------~~~~~~~ 79 (297)
T cd04059 27 NVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEA--SYD----------------FNDN---------DPDPTPR 79 (297)
T ss_pred ccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccccc--ccc----------------ccCC---------CCCCCCc
Confidence 457999999999999999999999999999985311000 000 0000 011112
Q ss_pred -CCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH-
Q 042484 144 -RDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL- 221 (620)
Q Consensus 144 -~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl- 221 (620)
.|..||||||||||+|+... .....||||+|+|+.+|++... ........++.++.+ .++||||||
T Consensus 80 ~~~~~gHGT~vAgiiag~~~~--------~~~~~GvAp~a~l~~~~~~~~~---~~~~~~~~~~~~~~~-~~~Vin~S~g 147 (297)
T cd04059 80 YDDDNSHGTRCAGEIAAVGNN--------GICGVGVAPGAKLGGIRMLDGD---VTDVVEAESLGLNPD-YIDIYSNSWG 147 (297)
T ss_pred cccccccCcceeeEEEeecCC--------CcccccccccceEeEEEecCCc---cccHHHHHHHhcccC-CceEEECCCC
Confidence 27889999999999988632 1246899999999999998764 444555666666554 469999999
Q ss_pred --------------HHHHHHHHHh-----cCcEEEEecCCCCCCCCc--cC--CCCCceEEecccccCCc
Q 042484 222 --------------VAIGSFHAVQ-----HGIVVVCSDGNEGLVDVT--LQ--NAAPRQIVVGASTMDRD 268 (620)
Q Consensus 222 --------------~~~~~~~a~~-----~Gv~vV~AAGN~G~~~~t--~~--~~ap~vitVga~~~~~~ 268 (620)
...+..++.. +|+++|+||||+|+.... .. ...+++|+|||++.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~g~ 217 (297)
T cd04059 148 PDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTANGV 217 (297)
T ss_pred CCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCCCC
Confidence 1223334433 699999999999973222 11 23589999999775543
No 32
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.8e-36 Score=298.78 Aligned_cols=143 Identities=18% Similarity=0.263 Sum_probs=109.6
Q ss_pred CcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhh
Q 042484 78 DIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRA 157 (620)
Q Consensus 78 GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGia 157 (620)
||+|||||||||++||+|.+.-... .. +....+ ........|..||||||||||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~------------~~-------~~~~~~-------~~~~~~~~d~~gHGT~vAgii 54 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDG------------EV-------TIDLEI-------IVVSAEGGDKDGHGTACAGII 54 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccccc------------cc-------cccccc-------ccCCCCCCCCCCcHHHHHHHH
Confidence 7999999999999999998631100 00 000001 112334567889999999999
Q ss_pred cccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH----------HHHHHH
Q 042484 158 GGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL----------VAIGSF 227 (620)
Q Consensus 158 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl----------~~~~~~ 227 (620)
++. +|+++|+.+|++... +.+..+.+++||+|++++|++|||||| +..+..
T Consensus 55 a~~------------------~p~~~i~~~~v~~~~-~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~~~~~~~~~~~ 115 (222)
T cd07492 55 KKY------------------APEAEIGSIKILGED-GRCNSFVLEKALRACVENDIRIVNLSLGGPGDRDFPLLKELLE 115 (222)
T ss_pred Hcc------------------CCCCeEEEEEEeCCC-CCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCcCHHHHHHHH
Confidence 843 499999999999887 678899999999999999999999999 455666
Q ss_pred HHHhcCcEEEEecCCCCCCCCccCCCCCceEEecccccC
Q 042484 228 HAVQHGIVVVCSDGNEGLVDVTLQNAAPRQIVVGASTMD 266 (620)
Q Consensus 228 ~a~~~Gv~vV~AAGN~G~~~~t~~~~ap~vitVga~~~~ 266 (620)
++.++|+++|+||||+++.... +...+.+|+|++...+
T Consensus 116 ~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~ 153 (222)
T cd07492 116 YAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTAD 153 (222)
T ss_pred HHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCC
Confidence 7778899999999999864332 4456899999986533
No 33
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=6.7e-36 Score=304.83 Aligned_cols=156 Identities=22% Similarity=0.292 Sum_probs=116.9
Q ss_pred CCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhh
Q 042484 75 YGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTL 154 (620)
Q Consensus 75 ~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVA 154 (620)
+|+||+|+|||+||+++||+|.+...... . +.. ..........|..+||||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~-------~-------------~~~-------~~~~~~~~~~~~~~HGT~va 53 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS-------Y-------------YVA-------VNDAGYASNGDGDSHGTHVA 53 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc-------c-------------ccc-------cccccCCCCCCCCChHHHHH
Confidence 69999999999999999999986411100 0 000 00001233457789999999
Q ss_pred HhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCC-CCCHHHHHHHHHHHHhCCCcEEeecH---H--------
Q 042484 155 SRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG-GCYDCDIIAAFDMAIHDGVDMLSVSL---V-------- 222 (620)
Q Consensus 155 Giaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~~i~~ai~~a~~~gvdVIn~Sl---~-------- 222 (620)
|||+|+.. .....|+||+|+|+.+|+++.. + .+....+.++++++++.+++|||||| .
T Consensus 54 giiag~~~---------~~~~~GiAp~a~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~ 123 (267)
T cd04848 54 GVIAAARD---------GGGMHGVAPDATLYSARASASA-GSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTT 123 (267)
T ss_pred HHHhcCcC---------CCCcccCCcCCEEEEEeccCCC-CcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccc
Confidence 99998863 2558899999999999999876 4 57788999999999999999999999 1
Q ss_pred ------------HHHHHHHHhcCcEEEEecCCCCCCCCccC---------CCCCceEEecccccCC
Q 042484 223 ------------AIGSFHAVQHGIVVVCSDGNEGLVDVTLQ---------NAAPRQIVVGASTMDR 267 (620)
Q Consensus 223 ------------~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~---------~~ap~vitVga~~~~~ 267 (620)
......+.++|+++|+||||++....... ...+.+|+||+++.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~ 189 (267)
T cd04848 124 YKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG 189 (267)
T ss_pred hhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC
Confidence 12345677899999999999985433322 2347899999976543
No 34
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.7e-36 Score=311.98 Aligned_cols=246 Identities=29% Similarity=0.437 Sum_probs=181.3
Q ss_pred EEEEeccccCCCCcCcC-CCCCCCCCCCcceeeecCCCCCcccCccccccc-cccCCCCCCCCCCCCCCCCChhhhhHhh
Q 042484 80 IIGNLDTGVWRESKSFG-DEGFGPIPSKWKGICQNDKDARFHCNRYFNQDY-AVHKGPLNSSFYSARDKNGHGSHTLSRA 157 (620)
Q Consensus 80 ~VgVIDTGId~~Hp~f~-~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~D~~gHGTHVAGia 157 (620)
+|||||||||++||+|. +. +. |.. +...| .. ..........|..+|||||||||
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~~-----~~~---------------~~~~~~~~---~~~~~~~~~~~~~~HGT~va~ii 56 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-FI-----WSK---------------VPGGYNFV---DGNPNPSPSDDDNGHGTHVAGII 56 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-EE-----EEE---------------EEEEEETT---TTBSTTTSSSTSSSHHHHHHHHH
T ss_pred CEEEEcCCcCCCChhHccCC-cc-----ccc---------------ccceeecc---CCCCCcCccccCCCccchhhhhc
Confidence 69999999999999998 32 10 000 00011 00 00012344567889999999999
Q ss_pred cccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHH-hCCCcEEeecH--------------H
Q 042484 158 GGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI-HDGVDMLSVSL--------------V 222 (620)
Q Consensus 158 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~-~~gvdVIn~Sl--------------~ 222 (620)
+|.. .. ....+.|+||+|+|+.+|++... + .....++++|++++ +.+++|||||| +
T Consensus 57 ~~~~-~~------~~~~~~Gva~~a~l~~~~i~~~~-~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~ 127 (282)
T PF00082_consen 57 AGNG-GN------NGPGINGVAPNAKLYSYKIFDNS-G-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDIL 127 (282)
T ss_dssp HHTT-SS------SSSSETCSSTTSEEEEEECSSTT-S-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHH
T ss_pred cccc-cc------ccccccccccccccccccccccc-c-cccccccchhhhhhhccCCcccccccccccccccccccccc
Confidence 9986 11 23457899999999999998776 4 78889999999999 89999999999 2
Q ss_pred HHHHHHHHhcCcEEEEecCCCCCCCCc-cCCC--CCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeE
Q 042484 223 AIGSFHAVQHGIVVVCSDGNEGLVDVT-LQNA--APRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTF 299 (620)
Q Consensus 223 ~~~~~~a~~~Gv~vV~AAGN~G~~~~t-~~~~--ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 299 (620)
......+.++|+++|+||||+|+.... +..| .+++|+||+.....
T Consensus 128 ~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~~-------------------------------- 175 (282)
T PF00082_consen 128 EEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNNG-------------------------------- 175 (282)
T ss_dssp HHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETTS--------------------------------
T ss_pred ccccccccccCcceeecccccccccccccccccccccccccccccccc--------------------------------
Confidence 334456789999999999999866543 3333 47889998854211
Q ss_pred EEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEE
Q 042484 300 IRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGY 379 (620)
Q Consensus 300 ~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 379 (620)
T Consensus 176 -------------------------------------------------------------------------------- 175 (282)
T PF00082_consen 176 -------------------------------------------------------------------------------- 175 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCCceeecCCCCCceeeccCCCCC----CCCCceeecC------------CCcEEeccccchhhhhhhhhhhhcccCCC
Q 042484 380 IKRPTTEFGAKPAPYMAALSSKGPI----HITPEILKRR------------IPFNSISGTSMSGPYISGIAGLPKILHPD 443 (620)
Q Consensus 380 i~~~~~~~~~~~~~~~a~FSS~GP~----~~kPdi~a~~------------~~y~~~sGTSMAaP~VAG~aALl~~~~P~ 443 (620)
.++.||++|+. ++||||++++ ..|..++|||||||+|||++|||+|++|+
T Consensus 176 --------------~~~~~s~~g~~~~~~~~~~di~a~G~~i~~~~~~~~~~~~~~~~GTS~Aap~vag~~All~~~~p~ 241 (282)
T PF00082_consen 176 --------------QPASYSNYGGPSDDGRIKPDIAAPGGNILSAVPGSDRGSYTSFSGTSFAAPVVAGAAALLLSKYPN 241 (282)
T ss_dssp --------------SBSTTSSBSTTETTCTTCEEEEEECSSEEEEETTTESEEEEEEESHHHHHHHHHHHHHHHHHHSTT
T ss_pred --------------cccccccccccccccccccccccccccccccccccccccccccCcCCchHHHHHHHHHHHHHHCCC
Confidence 23457777543 5788888722 23677999999999999999999999999
Q ss_pred CCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 444 WSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 444 ~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|++++||.+|++||..+.... .......||+|++|+.+|++
T Consensus 242 ~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 242 LTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp SHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred CCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 999999999999999876211 23455678999999999974
No 35
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.3e-36 Score=299.34 Aligned_cols=150 Identities=21% Similarity=0.204 Sum_probs=112.3
Q ss_pred CCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhH
Q 042484 76 GEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLS 155 (620)
Q Consensus 76 G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAG 155 (620)
+++|+|||||||||++||+|.+.- ..+.+ |... ....+.......|..||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i------------~~~~~--------~~~~----~~~~~~~~~~~~d~~gHGT~vAg 57 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKI------------IGGKS--------FSPY----EGDGNKVSPYYVSADGHGTAMAR 57 (247)
T ss_pred CCCCEEEEECCCcCCCchhhcccc------------ccCCC--------CCCC----CCCcccCCCCCCCCCCcHHHHHH
Confidence 789999999999999999998530 00000 0000 00000011223578899999999
Q ss_pred hhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCC------CCCHHHHHHHHHHHHhCCCcEEeecH--------
Q 042484 156 RAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG------GCYDCDIIAAFDMAIHDGVDMLSVSL-------- 221 (620)
Q Consensus 156 iaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g------~~~~~~i~~ai~~a~~~gvdVIn~Sl-------- 221 (620)
||+ |+||+|+|+.+|++... + .+....+++||+||+++|+|||||||
T Consensus 58 iI~------------------gvap~a~i~~~kv~~~~-~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~ 118 (247)
T cd07491 58 MIC------------------RICPSAKLYVIKLEDRP-SPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDN 118 (247)
T ss_pred HHH------------------HHCCCCeEEEEEecccC-CCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccccc
Confidence 997 68999999999999876 3 45678999999999999999999999
Q ss_pred ------HHHHHHHHHhcCcEEEEecCCCCCCCC-ccCCC--CCceEEecccccCCc
Q 042484 222 ------VAIGSFHAVQHGIVVVCSDGNEGLVDV-TLQNA--APRQIVVGASTMDRD 268 (620)
Q Consensus 222 ------~~~~~~~a~~~Gv~vV~AAGN~G~~~~-t~~~~--ap~vitVga~~~~~~ 268 (620)
+..++.+|.++|++||+||||+|.... +...+ .|+||+|||++.++.
T Consensus 119 ~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~g~ 174 (247)
T cd07491 119 DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADEDGG 174 (247)
T ss_pred ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCCCC
Confidence 345566788999999999999997654 34333 589999999876543
No 36
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-34 Score=291.11 Aligned_cols=271 Identities=22% Similarity=0.294 Sum_probs=204.4
Q ss_pred eeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeeeccCC-----CccccCcccCCCCC-------CccccccCCCCCCcEE
Q 042484 14 HINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLHTTH-----SWEFLGLEQNGRIP-------PNSIWEKARYGEDIII 81 (620)
Q Consensus 14 ~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~~~~~-----s~~~~g~~~~~~~~-------~~~~~~~~~~G~GV~V 81 (620)
+|+|+.-..+.+-...+++.|-++.++++......... .-.-+|+-...|.. ...+++ ...|+||..
T Consensus 145 ~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvta 223 (501)
T KOG1153|consen 145 VFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTA 223 (501)
T ss_pred hhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEE
Confidence 88889888999999999999999999988776543311 11112333222110 011222 237999999
Q ss_pred EEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhcccC
Q 042484 82 GNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAGGNF 161 (620)
Q Consensus 82 gVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaag~~ 161 (620)
-|+||||+..||+|.+. ..|-- |. ..-....|++||||||||+|++.
T Consensus 224 Yv~DTGVni~H~dFegR------a~wGa-~i-------------------------~~~~~~~D~nGHGTH~AG~I~sK- 270 (501)
T KOG1153|consen 224 YVLDTGVNIEHPDFEGR------AIWGA-TI-------------------------PPKDGDEDCNGHGTHVAGLIGSK- 270 (501)
T ss_pred EEecccccccccccccc------eeccc-cc-------------------------CCCCcccccCCCcceeeeeeecc-
Confidence 99999999999999863 11111 10 00122468999999999999966
Q ss_pred CCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC---------CCcEEeecH-------HHHH
Q 042484 162 VAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD---------GVDMLSVSL-------VAIG 225 (620)
Q Consensus 162 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~---------gvdVIn~Sl-------~~~~ 225 (620)
.-|||.+++|+++||+.++ |.+..+++++++|++++. +..|.|||+ +..+
T Consensus 271 -------------t~GvAK~s~lvaVKVl~~d-GsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S~aLn~A 336 (501)
T KOG1153|consen 271 -------------TFGVAKNSNLVAVKVLRSD-GSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRSAALNMA 336 (501)
T ss_pred -------------ccccccccceEEEEEeccC-CcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcccHHHHHH
Confidence 3599999999999999999 999999999999999986 466999999 7888
Q ss_pred HHHHHhcCcEEEEecCCCCCCCCcc-CCCCCceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCCCceeeEEEccC
Q 042484 226 SFHAVQHGIVVVCSDGNEGLVDVTL-QNAAPRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPSDKLFTFIRTLD 304 (620)
Q Consensus 226 ~~~a~~~Gv~vV~AAGN~G~~~~t~-~~~ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 304 (620)
+.+|.+.|+++++||||+-.+.+.. +..+..+|||||++..
T Consensus 337 V~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~-------------------------------------- 378 (501)
T KOG1153|consen 337 VNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN-------------------------------------- 378 (501)
T ss_pred HHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc--------------------------------------
Confidence 8999999999999999998665544 4457899999996522
Q ss_pred CCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccCCCcEEEEeCCc
Q 042484 305 PKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFTRHPVGYIKRPT 384 (620)
Q Consensus 305 ~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~i~~~~ 384 (620)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCCCCCceeeccCCCCC--CCCCceee------cCCCcEEeccccchhhhhhhhhhhhcccCCC---------CCHH
Q 042484 385 TEFGAKPAPYMAALSSKGPI--HITPEILK------RRIPFNSISGTSMSGPYISGIAGLPKILHPD---------WSPA 447 (620)
Q Consensus 385 ~~~~~~~~~~~a~FSS~GP~--~~kPdi~a------~~~~y~~~sGTSMAaP~VAG~aALl~~~~P~---------~sp~ 447 (620)
+.+|.||.||+. ...|.+.- ....-...||||||+|||||++|..++.+|. .||.
T Consensus 379 --------D~iA~FSN~G~CVdiFAPGv~IlSs~iGs~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~ 450 (501)
T KOG1153|consen 379 --------DTIAFFSNWGKCVDIFAPGVNILSSWIGSNNATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPS 450 (501)
T ss_pred --------cchhhhcCccceeeeecCchhhhhhhhcCccchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChH
Confidence 346677777775 34554433 4456678999999999999999999999883 3888
Q ss_pred HHHHHHHcccc
Q 042484 448 AVQSAIMTTAT 458 (620)
Q Consensus 448 ~ik~~L~~TA~ 458 (620)
++|..|..-..
T Consensus 451 ~lk~~~l~~~~ 461 (501)
T KOG1153|consen 451 ELKKRLLKFKT 461 (501)
T ss_pred Hhhhhhhcccc
Confidence 99887776543
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-34 Score=296.66 Aligned_cols=244 Identities=23% Similarity=0.359 Sum_probs=198.4
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCC
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSAR 144 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 144 (620)
+++-+|+.|+||++|+|||.|||+.-.||.|+.- |-+. + |-+ -..-.
T Consensus 189 ~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnv---------KERT----N-------WTN-------------E~tLd 235 (1033)
T KOG4266|consen 189 GADHLWKKGYTGAKVKVAIFDTGLRADHPHFRNV---------KERT----N-------WTN-------------EDTLD 235 (1033)
T ss_pred chhhHHhccccCCceEEEEeecccccCCccccch---------hhhc----C-------CcC-------------ccccc
Confidence 4678999999999999999999999999999841 0000 0 110 11234
Q ss_pred CCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH---
Q 042484 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL--- 221 (620)
Q Consensus 145 D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl--- 221 (620)
|..||||.|||+|||.. .-.|.||+++|+++|||.+. -..+++..+.||.|||....||+|+|+
T Consensus 236 D~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~-qVSYTSWFLDAFNYAI~~kidvLNLSIGGP 302 (1033)
T KOG4266|consen 236 DNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDA-QVSYTSWFLDAFNYAIATKIDVLNLSIGGP 302 (1033)
T ss_pred cCcccceeEeeeeccch------------hhcccCCccceeEEEeeccc-eeehhhHHHHHHHHHHhhhcceEeeccCCc
Confidence 67899999999999773 36799999999999999888 578999999999999999999999999
Q ss_pred ------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCCCC--ceEEecccccCCcccceEEeCCCeEEEEeeccCCCCCC
Q 042484 222 ------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNAAP--RQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKGLPS 293 (620)
Q Consensus 222 ------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~ap--~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 293 (620)
+-..........|++|.|+||+||-.++..+|+. .||.||...
T Consensus 303 DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGId----------------------------- 353 (1033)
T KOG4266|consen 303 DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGID----------------------------- 353 (1033)
T ss_pred ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecccc-----------------------------
Confidence 3344555668899999999999999999999863 466665421
Q ss_pred CceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeecccC
Q 042484 294 DKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFFTFT 373 (620)
Q Consensus 294 ~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 373 (620)
T Consensus 354 -------------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 354 -------------------------------------------------------------------------------- 353 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeCCceeecCCCCCceeeccCCCCC---------CCCCceee---------cCCCcEEeccccchhhhhhhhhh
Q 042484 374 RHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---------HITPEILK---------RRIPFNSISGTSMSGPYISGIAG 435 (620)
Q Consensus 374 ~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---------~~kPdi~a---------~~~~y~~~sGTSMAaP~VAG~aA 435 (620)
..+.+|.|||||-+ ++||||++ -..+...+||||.|+|.|||+++
T Consensus 354 -----------------fdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~GCr~LSGTSVaSPVVAGav~ 416 (1033)
T KOG4266|consen 354 -----------------FDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVSTGCRSLSGTSVASPVVAGAVC 416 (1033)
T ss_pred -----------------ccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccccchhccCCcccchhhhceee
Confidence 12567899999975 68999998 34567889999999999999999
Q ss_pred hhcc----cCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 436 LPKI----LHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 436 Ll~~----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
||.+ +.--+.|+.+|++|+..|.++... .-|.||+|++|+.++++
T Consensus 417 LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 417 LLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHH
Confidence 9976 233468999999999999998532 34799999999998875
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-30 Score=277.65 Aligned_cols=214 Identities=23% Similarity=0.268 Sum_probs=162.5
Q ss_pred CCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCC-CCCHHHHHHHHHHHHhCCCcEEeecH----
Q 042484 147 NGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMG-GCYDCDIIAAFDMAIHDGVDMLSVSL---- 221 (620)
Q Consensus 147 ~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~~i~~ai~~a~~~gvdVIn~Sl---- 221 (620)
.-|||||||||+|+..+ .....||||+|+|+.+++.+..-| ..+...+.+|+..+++..+|+||||+
T Consensus 310 g~HGTHVAgIa~anhpe--------~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPE--------TPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCC--------CccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 45999999999999854 245789999999999999775533 24556899999999999999999999
Q ss_pred --------HHHHHHHHHhcCcEEEEecCCCCCCCCccCCC---CCceEEecccccCCcccceEEeCCCeEEEEeeccCCC
Q 042484 222 --------VAIGSFHAVQHGIVVVCSDGNEGLVDVTLQNA---APRQIVVGASTMDRDLSNYVVLGNNKRFKLISERAKG 290 (620)
Q Consensus 222 --------~~~~~~~a~~~Gv~vV~AAGN~G~~~~t~~~~---ap~vitVga~~~~~~~~~~~~~g~~~~~~g~~~~~~~ 290 (620)
++.......++|+++|+||||+||...|++.| ...||.|||--........
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~------------------ 443 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE------------------ 443 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh------------------
Confidence 45555555689999999999999999998886 3578889883211100000
Q ss_pred CCCCceeeEEEccCCCcccccEEEEEeccchhHHHHHHHcCCcEEEEecCCCCCCcccCCCccccEEEeecCCcceeeec
Q 042484 291 LPSDKLFTFIRTLDPKKVKGKILVCLNVRSVDEGLQAALAGAADIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYNLFF 370 (620)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 370 (620)
| .
T Consensus 444 -----------------------------------------------y-------~------------------------ 445 (1304)
T KOG1114|consen 444 -----------------------------------------------Y-------S------------------------ 445 (1304)
T ss_pred -----------------------------------------------h-------h------------------------
Confidence 0 0
Q ss_pred ccCCCcEEEEeCCceeecCCCCCceeeccCCCCC---CCCCceeec-----------CCCcEEeccccchhhhhhhhhhh
Q 042484 371 TFTRHPVGYIKRPTTEFGAKPAPYMAALSSKGPI---HITPEILKR-----------RIPFNSISGTSMSGPYISGIAGL 436 (620)
Q Consensus 371 ~~~~~~~~~i~~~~~~~~~~~~~~~a~FSS~GP~---~~kPdi~a~-----------~~~y~~~sGTSMAaP~VAG~aAL 436 (620)
+..+....+-.+|||||+ -+.--|.|+ -..-..|+|||||+|+++|++||
T Consensus 446 ----------------~~e~vp~~~YtWsSRgP~~DG~lGVsi~APggAiAsVP~~tlq~~qLMNGTSMsSP~acG~IAl 509 (1304)
T KOG1114|consen 446 ----------------VREPVPSNPYTWSSRGPCLDGDLGVSISAPGGAIASVPQYTLQNSQLMNGTSMSSPSACGAIAL 509 (1304)
T ss_pred ----------------hhccCCCCccccccCCCCcCCCcceEEecCCccccCCchhhhhhhhhhCCcccCCccccchHHH
Confidence 000111234568999997 244445552 23346899999999999999999
Q ss_pred hc----ccCCCCCHHHHHHHHHcccccCCCCcceeccCCCCCCCCceecccccCccccCC
Q 042484 437 PK----ILHPDWSPAAVQSAIMTTATTQDNKKQQILDASFTEATPFSYGAGHVQPNLAMD 492 (620)
Q Consensus 437 l~----~~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A~~ 492 (620)
|+ |.+-.|||..||.+|++||.++.+ ..+|.||.|++++.+|.+
T Consensus 510 lLSgLKa~ni~ytpysVrrAlenTa~~l~~------------id~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 510 LLSGLKAQNIPYTPYSVRRALENTATKLGD------------IDSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHhcccccCc------------cchhccCcceeehhHHHH
Confidence 75 567799999999999999998853 267999999999999987
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.96 E-value=1.2e-28 Score=246.04 Aligned_cols=154 Identities=27% Similarity=0.347 Sum_probs=113.3
Q ss_pred cEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCCCCCCCChhhhhHhhc
Q 042484 79 IIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSARDKNGHGSHTLSRAG 158 (620)
Q Consensus 79 V~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiaa 158 (620)
|+|+|||+||+++||+|... ........ ++ ...........|..+||||||++|+
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~~~~~~~------------~~----~~~~~~~~~~~~~~~HGt~va~~i~ 55 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FGGGDGGN------------DD----DDNENGPTDPDDGNGHGTHVAGIIA 55 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------ccCccccc------------cc----ccCcCCCCCCCCCCCcHHHHHHHHh
Confidence 68999999999999987210 00000000 00 0000011345578899999999999
Q ss_pred ccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHH-hCCCcEEeecH----------HHHHHH
Q 042484 159 GNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI-HDGVDMLSVSL----------VAIGSF 227 (620)
Q Consensus 159 g~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~-~~gvdVIn~Sl----------~~~~~~ 227 (620)
+.... ....|+||+++|+.+|+.... +......+++++++++ ..+++|||||| +.....
T Consensus 56 ~~~~~---------~~~~g~a~~a~i~~~~~~~~~-~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~~~~~~~~~~~ 125 (241)
T cd00306 56 ASANN---------GGGVGVAPGAKLIPVKVLDGD-GSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAID 125 (241)
T ss_pred cCCCC---------CCCEEeCCCCEEEEEEEecCC-CCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCCCCHHHHHHHH
Confidence 88633 223899999999999998877 4578889999999999 89999999999 344555
Q ss_pred HHHhc-CcEEEEecCCCCCCCC---ccCCCCCceEEecccccCC
Q 042484 228 HAVQH-GIVVVCSDGNEGLVDV---TLQNAAPRQIVVGASTMDR 267 (620)
Q Consensus 228 ~a~~~-Gv~vV~AAGN~G~~~~---t~~~~ap~vitVga~~~~~ 267 (620)
.+.++ |+++|+|+||.+.... ..+...+++|+||+.+.+.
T Consensus 126 ~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~ 169 (241)
T cd00306 126 YALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG 169 (241)
T ss_pred HHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC
Confidence 66677 9999999999997655 3555679999999976544
No 40
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.95 E-value=4e-28 Score=243.32 Aligned_cols=104 Identities=19% Similarity=0.157 Sum_probs=74.4
Q ss_pred CCCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHH--HhCCCcEEee
Q 042484 142 SARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMA--IHDGVDMLSV 219 (620)
Q Consensus 142 ~~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a--~~~gvdVIn~ 219 (620)
...|+.+|||||||||||.. |++|+++|+..++... ..+.+.++++|+ .+.+++||||
T Consensus 32 ~~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~-----~~~~~~~~i~~~~~~~~gv~VINm 91 (247)
T cd07488 32 RNNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK-----SNNGQWQECLEAQQNGNNVKIINH 91 (247)
T ss_pred CCCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC-----CCCccHHHHHHHHHhcCCceEEEe
Confidence 35688999999999999863 4569999987665321 223356677777 6689999999
Q ss_pred cH-----H------------HHHHHHHHhc-CcEEEEecCCCCCCC---CccCC--CCCceEEeccccc
Q 042484 220 SL-----V------------AIGSFHAVQH-GIVVVCSDGNEGLVD---VTLQN--AAPRQIVVGASTM 265 (620)
Q Consensus 220 Sl-----~------------~~~~~~a~~~-Gv~vV~AAGN~G~~~---~t~~~--~ap~vitVga~~~ 265 (620)
|| . ..+...+.++ |+++|+||||+|... ..+.. .++.+|+|||+..
T Consensus 92 S~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~ 160 (247)
T cd07488 92 SYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDR 160 (247)
T ss_pred CCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecC
Confidence 99 1 2233444455 999999999999743 22223 3578999999653
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.9e-21 Score=209.74 Aligned_cols=163 Identities=22% Similarity=0.317 Sum_probs=119.2
Q ss_pred Ccccccc--CCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCC-C
Q 042484 66 PNSIWEK--ARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFY-S 142 (620)
Q Consensus 66 ~~~~~~~--~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~ 142 (620)
...+|.. +.+|+||.|+|||+||+..||+|.+..... .++ ...... .
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~------------------------~~~------~~~~~~~~ 178 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAG------------------------GDF------VDGDPEPP 178 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhcccccc------------------------ccc------ccCCCCCC
Confidence 3578887 899999999999999999999998641100 011 000111 2
Q ss_pred CCCCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCC--CcEEeec
Q 042484 143 ARDKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDG--VDMLSVS 220 (620)
Q Consensus 143 ~~D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~g--vdVIn~S 220 (620)
..|..+|||||+|++++.... +.....|+||+++++.+|++....|....+++++++++++..+ +++||||
T Consensus 179 ~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s 251 (508)
T COG1404 179 FLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLS 251 (508)
T ss_pred CCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEec
Confidence 568899999999999984211 1244789999999999999986535677788899999999999 9999999
Q ss_pred H-----------HHHHHHHHHhcC-cEEEEecCCCCCCCCc----cCCCC--CceEEeccccc
Q 042484 221 L-----------VAIGSFHAVQHG-IVVVCSDGNEGLVDVT----LQNAA--PRQIVVGASTM 265 (620)
Q Consensus 221 l-----------~~~~~~~a~~~G-v~vV~AAGN~G~~~~t----~~~~a--p~vitVga~~~ 265 (620)
+ +..+...++..| +++|+++||.+..... .+... +.+++|++...
T Consensus 252 ~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~ 314 (508)
T COG1404 252 LGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL 314 (508)
T ss_pred CCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC
Confidence 4 455555666666 9999999999865421 11112 47788888654
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.1e-18 Score=174.08 Aligned_cols=160 Identities=20% Similarity=0.243 Sum_probs=100.7
Q ss_pred CCccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccccccCCCCCCCCCCC-
Q 042484 65 PPNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDYAVHKGPLNSSFYSA- 143 (620)
Q Consensus 65 ~~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~- 143 (620)
++..+|..+++||+|.+||+|.||||-||++..+ + . .+..+ +| ..+++++-|
T Consensus 149 nv~~awa~g~tgknvttaimddgvdymhpdlk~n-y-------n--aeasy------------df-----ssndpfpypr 201 (629)
T KOG3526|consen 149 NVAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-Y-------N--AEASY------------DF-----SSNDPFPYPR 201 (629)
T ss_pred cHHHHHhhcccCCCceEEeecCCchhcCcchhcc-c-------C--ceeec------------cc-----ccCCCCCCCc
Confidence 4568999999999999999999999999999732 1 1 00001 11 011111112
Q ss_pred -CC--CCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh-CCCcEEee
Q 042484 144 -RD--KNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH-DGVDMLSV 219 (620)
Q Consensus 144 -~D--~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~-~gvdVIn~ 219 (620)
.| .+.|||.|||-+++...++ -.-.|||++.++..+|+++. .+..+++.|-...-+ ...+|.+-
T Consensus 202 ytddwfnshgtrcagev~aardng--------icgvgvaydskvagirmldq----pymtdlieansmghep~kihiysa 269 (629)
T KOG3526|consen 202 YTDDWFNSHGTRCAGEVVAARDNG--------ICGVGVAYDSKVAGIRMLDQ----PYMTDLIEANSMGHEPSKIHIYSA 269 (629)
T ss_pred ccchhhhccCccccceeeeeccCC--------ceeeeeeeccccceeeecCC----chhhhhhhhcccCCCCceEEEEec
Confidence 12 4789999999887776432 23469999999999999864 445556555322211 35789999
Q ss_pred cH---------------HHHHHHHHH-----hcCcEEEEecCCCCCCCC---ccCCCCCceEEeccc
Q 042484 220 SL---------------VAIGSFHAV-----QHGIVVVCSDGNEGLVDV---TLQNAAPRQIVVGAS 263 (620)
Q Consensus 220 Sl---------------~~~~~~~a~-----~~Gv~vV~AAGN~G~~~~---t~~~~ap~vitVga~ 263 (620)
|| ...+..+-+ ..|-+.|+|.|..|.+.. .--..+-|.|++-+.
T Consensus 270 swgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsa 336 (629)
T KOG3526|consen 270 SWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSA 336 (629)
T ss_pred ccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehh
Confidence 99 122222222 245699999999884321 111234577776543
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.58 E-value=5.2e-15 Score=157.37 Aligned_cols=91 Identities=24% Similarity=0.234 Sum_probs=71.4
Q ss_pred ceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhC---CCcEEeecH--------------HHHHHHHHHhcCcE
Q 042484 173 GTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIHD---GVDMLSVSL--------------VAIGSFHAVQHGIV 235 (620)
Q Consensus 173 g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~---gvdVIn~Sl--------------~~~~~~~a~~~Gv~ 235 (620)
....||||+|+|+.|+++.+. ...++.++.+++.+ +++|||+|| +.....+|..+||.
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~-----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV-----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC-----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 347899999999999997642 34577888888887 999999999 23455667789999
Q ss_pred EEEecCCCCCCCCc-----------cCCCCCceEEecccccCCc
Q 042484 236 VVCSDGNEGLVDVT-----------LQNAAPRQIVVGASTMDRD 268 (620)
Q Consensus 236 vV~AAGN~G~~~~t-----------~~~~ap~vitVga~~~~~~ 268 (620)
||+|+||+|..... .+...|+|++||+++....
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 99999999965432 2334699999999876544
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.97 E-value=9.3e-10 Score=101.42 Aligned_cols=97 Identities=25% Similarity=0.253 Sum_probs=76.0
Q ss_pred cCCCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCcccC-CCccccEEEeecCCccee-eecccCCCcEE
Q 042484 303 LDPKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGNDHTT-DRHVLPASVITFNDGYYN-LFFTFTRHPVG 378 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~~-~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~ 378 (620)
+...+++|||+||.| |.+..|..+++++||.|+|++++......... ....+|.+.|+..+|..| +++++ .+
T Consensus 41 ~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~----~~ 116 (143)
T cd02133 41 FEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES----SK 116 (143)
T ss_pred cCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC----CC
Confidence 445679999999999 88999999999999999999988753211111 135689999999999999 99887 44
Q ss_pred EEeCCceeecCCCCCceeeccCCCCC
Q 042484 379 YIKRPTTEFGAKPAPYMAALSSKGPI 404 (620)
Q Consensus 379 ~i~~~~~~~~~~~~~~~a~FSS~GP~ 404 (620)
++.+..+.. ..+.+.++.||||||.
T Consensus 117 ~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 117 KLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred eEEEEeccc-cccCCccccccCcCCC
Confidence 555444444 4567889999999996
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.81 E-value=8.7e-09 Score=92.77 Aligned_cols=104 Identities=37% Similarity=0.523 Sum_probs=80.9
Q ss_pred EEeCCCeEEEEeeccCCCCCCCceeeEE----------------EccCCCcccccEEEEEe--c-cchhHHHHHHHcCCc
Q 042484 273 VVLGNNKRFKLISERAKGLPSDKLFTFI----------------RTLDPKKVKGKILVCLN--V-RSVDEGLQAALAGAA 333 (620)
Q Consensus 273 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~----------------~~~~~~~~~gkivl~~~--~-~~~~~~~~~~~~ga~ 333 (620)
+++|||+.+.|.+++.+.. ..++++ ..+++.+++||||||++ | .+..+..+++++||.
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~ 78 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGA 78 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCc
Confidence 6789999999999997553 122221 22445789999999999 6 778999999999999
Q ss_pred EEEEecCCCCCCcccCCCccccEEEeecCCccee-eecccCCCcEEE
Q 042484 334 DIVLVNLPEFGNDHTTDRHVLPASVITFNDGYYN-LFFTFTRHPVGY 379 (620)
Q Consensus 334 gvi~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~~ 379 (620)
|+|++++.............+|.+.|+.++|+.| +|+++.++++++
T Consensus 79 gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 79 GMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999988754333333346899999999999999 999988776554
No 46
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1e-06 Score=95.08 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=91.2
Q ss_pred CccccccCCCCCCcEEEEeccccCCCCcCcCCCCCCCCCCCcceeeecCCCCCcccCccccccc-cccCCCCCCCCCCCC
Q 042484 66 PNSIWEKARYGEDIIIGNLDTGVWRESKSFGDEGFGPIPSKWKGICQNDKDARFHCNRYFNQDY-AVHKGPLNSSFYSAR 144 (620)
Q Consensus 66 ~~~~~~~~~~G~GV~VgVIDTGId~~Hp~f~~~g~~~~~~~~~g~~~~~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~ 144 (620)
....|..+++|+++.++|.|.|++..||+.... +.+.. .| ....+..+..-.+..
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~~~~~-----------------------s~d~~~~~~~p~~~~~~~ 77 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-YDPLG-----------------------SYDVNRHDNDPEPRCDGT 77 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-cCcce-----------------------eEeeecCCCCcccccCCC
Confidence 468999999999999999999999999999742 21110 01 000111222233334
Q ss_pred CCCCChhhhhHhhcccCCCCCceeccCCceeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHH-hCCCcEEeecH--
Q 042484 145 DKNGHGSHTLSRAGGNFVAGASVFGFGKGTAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAI-HDGVDMLSVSL-- 221 (620)
Q Consensus 145 D~~gHGTHVAGiaag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~-~~gvdVIn~Sl-- 221 (620)
....|||-||+-.+..... ..-..|++|++++..++++... .+ +...+..... ..-.|+-+.||
T Consensus 78 ~~~~~g~~Ca~~~a~~~~~--------~~C~vg~~~~~~~~g~~~l~~~---v~--~~~~~~~~~~~~~~~di~scsw~p 144 (431)
T KOG3525|consen 78 NENKHGTRCAGCVAARANN--------LTCGVGVAYNATIGGIRMLAGC---VS--DAVEAPSLGFGPCHIDIYSCSWGP 144 (431)
T ss_pred CccccCCCCCcccccccCC--------CcCCCCcccCccccceeeeeee---cc--cceecccccCCCCCceeecCcCCc
Confidence 5688999999999877521 2346799999999999988643 11 1111211111 12367888888
Q ss_pred -------------HHHHHH-----HHHhcCcEEEEecCCCCC
Q 042484 222 -------------VAIGSF-----HAVQHGIVVVCSDGNEGL 245 (620)
Q Consensus 222 -------------~~~~~~-----~a~~~Gv~vV~AAGN~G~ 245 (620)
...+.. ....+|-+.|++.||.|.
T Consensus 145 ddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~ 186 (431)
T KOG3525|consen 145 DDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGT 186 (431)
T ss_pred ccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccc
Confidence 112222 233678899999999884
No 47
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.20 E-value=2.7e-06 Score=70.20 Aligned_cols=46 Identities=35% Similarity=0.559 Sum_probs=40.7
Q ss_pred cccceeEEecceeeeEEEEcCHHHHHHHhcCCCeEEEEeceeeeec
Q 042484 3 LAHAIFYSYTRHINGFAAKLADAVAAEMAKHPKVVSVFLSKEKKLH 48 (620)
Q Consensus 3 ~~~~~~~~y~~~~~G~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~~ 48 (620)
...++.+.|+..||||++++++++++.|+++|+|++|+|++.++++
T Consensus 37 ~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 37 INAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp TT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred cCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 3678999999999999999999999999999999999999998874
No 48
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.5e-05 Score=92.82 Aligned_cols=84 Identities=21% Similarity=0.200 Sum_probs=49.5
Q ss_pred eeeeecCCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHh---CCCcEEeecH--------------HHHHHHHHHhcCcEE
Q 042484 174 TAKGGSPKARVAGYKACWDGMGGCYDCDIIAAFDMAIH---DGVDMLSVSL--------------VAIGSFHAVQHGIVV 236 (620)
Q Consensus 174 ~~~GvAP~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~---~gvdVIn~Sl--------------~~~~~~~a~~~Gv~v 236 (620)
...-+||+|+|..|-.- . ........|+..-.. ..+..++.|+ +..-...|..+|+.+
T Consensus 287 ~s~A~AP~A~I~lvvap--~---~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi 361 (1174)
T COG4934 287 WSHAMAPKANIDLVVAP--N---PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITI 361 (1174)
T ss_pred hhhccCccCceEEEEcC--C---CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEE
Confidence 35679999999988762 2 222222233222221 1222233333 233345677999999
Q ss_pred EEecCCCCCCCCc------c--CCCCCceEEecc
Q 042484 237 VCSDGNEGLVDVT------L--QNAAPRQIVVGA 262 (620)
Q Consensus 237 V~AAGN~G~~~~t------~--~~~ap~vitVga 262 (620)
++|+|.+|....+ + +..+|+|++||.
T Consensus 362 ~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 362 FAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999854432 2 223699999997
No 49
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.08 E-value=3.1e-06 Score=72.78 Aligned_cols=69 Identities=25% Similarity=0.359 Sum_probs=53.5
Q ss_pred ccCCCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCC----CCCcccCCCccccEEEeecCCccee-eec
Q 042484 302 TLDPKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPE----FGNDHTTDRHVLPASVITFNDGYYN-LFF 370 (620)
Q Consensus 302 ~~~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~----~~~~~~~~~~~~p~~~i~~~~g~~l-~~~ 370 (620)
.+...+++||||||+| |++.+|..+++++||.|+|+++... ...........+|.++|+..+|+.| +|+
T Consensus 26 ~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 26 DYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp HTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 3457889999999999 8999999999999999999999211 1122234468999999999999888 653
No 50
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.96 E-value=9.6e-06 Score=72.55 Aligned_cols=75 Identities=24% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCc---ccC--CCccccEEEeecCCccee-eecccCCC
Q 042484 304 DPKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGND---HTT--DRHVLPASVITFNDGYYN-LFFTFTRH 375 (620)
Q Consensus 304 ~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l-~~~~~~~~ 375 (620)
+..+++|||+||.| |.+..|..+++++||.++|++|+...... ... ....+|.+.|+..+|+.| +++..+.+
T Consensus 38 ~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~ 117 (122)
T cd04816 38 DGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAGET 117 (122)
T ss_pred CCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCCCE
Confidence 34578999999999 89999999999999999999988662111 111 345689999999999999 99887755
Q ss_pred cEE
Q 042484 376 PVG 378 (620)
Q Consensus 376 ~~~ 378 (620)
.++
T Consensus 118 v~~ 120 (122)
T cd04816 118 LEL 120 (122)
T ss_pred EEE
Confidence 443
No 51
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.94 E-value=1.1e-05 Score=71.81 Aligned_cols=74 Identities=22% Similarity=0.122 Sum_probs=59.3
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCccc----CCCccccEEEeecCCccee-eecccCCCcEE
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGNDHT----TDRHVLPASVITFNDGYYN-LFFTFTRHPVG 378 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~ 378 (620)
.+++|||+||.| |++..|..+++++||.|+|++++......+. .....+|.+.|+..+|..| +|++.+...++
T Consensus 37 ~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v 116 (118)
T cd04818 37 AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAALAAGGTVTV 116 (118)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 458999999999 8889999999999999999998876311111 1235799999999999999 99987765554
Q ss_pred E
Q 042484 379 Y 379 (620)
Q Consensus 379 ~ 379 (620)
+
T Consensus 117 ~ 117 (118)
T cd04818 117 T 117 (118)
T ss_pred e
Confidence 3
No 52
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.86 E-value=2.1e-05 Score=69.68 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=61.0
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCC-C-cc---c---CCCccccEEEeecCCccee-eecccCC
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFG-N-DH---T---TDRHVLPASVITFNDGYYN-LFFTFTR 374 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~-~-~~---~---~~~~~~p~~~i~~~~g~~l-~~~~~~~ 374 (620)
.+++|+|+|++| |+|.+|..+++++||.++|++|+.... . .+ . .....+|.++|+..+|+.| +.+..+.
T Consensus 31 ~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~ 110 (118)
T cd02127 31 HDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKTLERLG 110 (118)
T ss_pred cccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHHHHHHHHcCC
Confidence 467899999999 999999999999999999999986531 1 11 1 1235789999999999999 8888887
Q ss_pred CcEEEE
Q 042484 375 HPVGYI 380 (620)
Q Consensus 375 ~~~~~i 380 (620)
.+++.|
T Consensus 111 ~~~~~~ 116 (118)
T cd02127 111 LPYAII 116 (118)
T ss_pred ceEEee
Confidence 776654
No 53
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.86 E-value=1.8e-05 Score=70.86 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=59.8
Q ss_pred cCCCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCC-Cccc-----CCCccccEEEeecCCccee-eecccC
Q 042484 303 LDPKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFG-NDHT-----TDRHVLPASVITFNDGYYN-LFFTFT 373 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~-~~~~-----~~~~~~p~~~i~~~~g~~l-~~~~~~ 373 (620)
+...+++|||+||.| |.+..|..+++++||.|+|++++.... .... .....+|.+.|+..+|+.| +++.++
T Consensus 40 ~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~l~~~~~~~ 119 (126)
T cd00538 40 DSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEAG 119 (126)
T ss_pred ccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHHHHHHHHhcC
Confidence 346779999999999 889999999999999999999887521 1111 1345799999999999999 999876
Q ss_pred CCcE
Q 042484 374 RHPV 377 (620)
Q Consensus 374 ~~~~ 377 (620)
.+.+
T Consensus 120 ~~v~ 123 (126)
T cd00538 120 KTVT 123 (126)
T ss_pred CceE
Confidence 5443
No 54
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.81 E-value=2.2e-05 Score=71.54 Aligned_cols=75 Identities=19% Similarity=0.059 Sum_probs=60.4
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCC-cc--c-CCCccccEEEeecCCccee-eecccCCCcE
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGN-DH--T-TDRHVLPASVITFNDGYYN-LFFTFTRHPV 377 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~-~~--~-~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~ 377 (620)
+.++.|+|+|+.| |+|.+|..+++++||.++|+||+...+. .+ . .....+|.++|+..+|+.| ..+..+.+.+
T Consensus 56 ~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l~~~l~~G~~Vt 135 (138)
T cd02122 56 PPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEILELLERGISVT 135 (138)
T ss_pred CccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHHHHHHHcCCcEE
Confidence 3568999999999 9999999999999999999999986221 22 1 1234689999999999999 8888876655
Q ss_pred EE
Q 042484 378 GY 379 (620)
Q Consensus 378 ~~ 379 (620)
++
T Consensus 136 v~ 137 (138)
T cd02122 136 MV 137 (138)
T ss_pred Ee
Confidence 54
No 55
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.80 E-value=2.6e-05 Score=70.06 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=58.0
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCC-----Ccc---c----CCCccccEEEeecCCccee-ee
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFG-----NDH---T----TDRHVLPASVITFNDGYYN-LF 369 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~-----~~~---~----~~~~~~p~~~i~~~~g~~l-~~ 369 (620)
+.+++|||+|++| |+|.+|..+++++||.++|++|+.... ..+ . .....+|.++|+..+|+.| +.
T Consensus 36 ~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~ 115 (126)
T cd02126 36 AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAA 115 (126)
T ss_pred ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHH
Confidence 4468999999999 999999999999999999999876531 011 0 1245789999999999999 88
Q ss_pred cccCCCcE
Q 042484 370 FTFTRHPV 377 (620)
Q Consensus 370 ~~~~~~~~ 377 (620)
+..+...+
T Consensus 116 l~~~~~~~ 123 (126)
T cd02126 116 IKEHQNVE 123 (126)
T ss_pred HHhCCceE
Confidence 87765444
No 56
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.79 E-value=3.8e-05 Score=67.83 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=55.0
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCC--ccc--CCCccccEEEeecCCccee-eeccc
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGN--DHT--TDRHVLPASVITFNDGYYN-LFFTF 372 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~--~~~--~~~~~~p~~~i~~~~g~~l-~~~~~ 372 (620)
+.+++|||+|++| |+|..|..+++++||.++|++|+..... ... .....+|.++|+..+|+.| ..+..
T Consensus 40 ~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 40 PGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred ccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHHHHhcc
Confidence 4578999999999 9999999999999999999999875211 111 1346789999999999999 66653
No 57
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.78 E-value=2.8e-05 Score=69.57 Aligned_cols=74 Identities=20% Similarity=0.135 Sum_probs=59.6
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCC---cc-cCCCccccEEEeecCCccee-eecccCCCcEE
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGN---DH-TTDRHVLPASVITFNDGYYN-LFFTFTRHPVG 378 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~---~~-~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~ 378 (620)
.+++|||+|++| |.+.+|..+++++||.++|++|+...+. .. ......+|.+.|+..+|+.| +.++.+.+.++
T Consensus 41 ~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 41 ASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVAALANGGEVSA 120 (122)
T ss_pred cCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 468999999999 9999999999999999999998873221 11 11245799999999999999 88888766554
Q ss_pred E
Q 042484 379 Y 379 (620)
Q Consensus 379 ~ 379 (620)
+
T Consensus 121 ~ 121 (122)
T cd02130 121 N 121 (122)
T ss_pred e
Confidence 3
No 58
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.75 E-value=3.3e-05 Score=70.14 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=55.9
Q ss_pred cCCCcccccEEEEEe--cc-----chhHHHHHHHcCCcEEEEecCCCC-CC---cccCC--CccccEEEeecCCccee-e
Q 042484 303 LDPKKVKGKILVCLN--VR-----SVDEGLQAALAGAADIVLVNLPEF-GN---DHTTD--RHVLPASVITFNDGYYN-L 368 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~~-----~~~~~~~~~~~ga~gvi~~~~~~~-~~---~~~~~--~~~~p~~~i~~~~g~~l-~ 368 (620)
+.+.+++|||+|++| |. |.+|..+++++||.|+|+||+... +. .+... ...+|.+.|+..+|+.| .
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 345679999999999 88 999999999999999999999731 11 11211 46899999999999999 7
Q ss_pred eccc
Q 042484 369 FFTF 372 (620)
Q Consensus 369 ~~~~ 372 (620)
.+..
T Consensus 130 ~l~~ 133 (139)
T cd04817 130 ALGQ 133 (139)
T ss_pred HhcC
Confidence 6643
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.66 E-value=5.4e-05 Score=69.27 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=58.6
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCccc------CCCccccEEEeecCCccee-eecccCCCc
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGNDHT------TDRHVLPASVITFNDGYYN-LFFTFTRHP 376 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~l-~~~~~~~~~ 376 (620)
.+++|+|+|++| |+|.+|..+++++||.++|+||+........ .....+|.+.|+..+|+.| +.+..+...
T Consensus 56 ~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~V 135 (139)
T cd02132 56 SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKKV 135 (139)
T ss_pred cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCcE
Confidence 478999999999 9999999999999999999998765211111 1135789999999999999 888876654
Q ss_pred EE
Q 042484 377 VG 378 (620)
Q Consensus 377 ~~ 378 (620)
++
T Consensus 136 tv 137 (139)
T cd02132 136 EV 137 (139)
T ss_pred EE
Confidence 43
No 60
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.53 E-value=9.8e-05 Score=66.33 Aligned_cols=73 Identities=16% Similarity=0.003 Sum_probs=57.8
Q ss_pred cccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCc-c----------cCCCccccEEEeecCCccee-eeccc
Q 042484 307 KVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGND-H----------TTDRHVLPASVITFNDGYYN-LFFTF 372 (620)
Q Consensus 307 ~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~-~----------~~~~~~~p~~~i~~~~g~~l-~~~~~ 372 (620)
...++|+|++| |.|..|..+++++||.++|++|+.+.... . ......+|.++|+..+|+.| ..+..
T Consensus 40 ~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~ 119 (127)
T cd02125 40 GRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISN 119 (127)
T ss_pred CCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhc
Confidence 36789999999 99999999999999999999998653111 0 11234689999999999999 88887
Q ss_pred CCCcEEE
Q 042484 373 TRHPVGY 379 (620)
Q Consensus 373 ~~~~~~~ 379 (620)
+...+++
T Consensus 120 g~~V~v~ 126 (127)
T cd02125 120 GEMVVIK 126 (127)
T ss_pred CCeEEEe
Confidence 7655443
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.43 E-value=0.00018 Score=63.59 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=55.3
Q ss_pred cCCCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCc--cc----CCCccccEEEeecCCccee-eeccc
Q 042484 303 LDPKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGND--HT----TDRHVLPASVITFNDGYYN-LFFTF 372 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~--~~----~~~~~~p~~~i~~~~g~~l-~~~~~ 372 (620)
++..+++|||+|+.| |+|.+|..+++++||.++|++|+...... .. .....+|.+.|+.++++.| .++..
T Consensus 33 ~~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 33 QEHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred CCcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 356778999999999 99999999999999999999987753111 11 2335789999999999888 65543
No 62
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=97.37 E-value=0.0011 Score=58.21 Aligned_cols=75 Identities=20% Similarity=0.369 Sum_probs=48.8
Q ss_pred EEeeccCceEEEEEEEEEcCC-CceEEEEEeCC--------CCe-----------EEEEecceEEEeeCCeEEEEEEEEE
Q 042484 544 ITVPKLSGSITVTRRVKNVGS-PGTYQARVKTP--------QGV-----------SVTMAPKSLKFINVGEEKSFKVNIK 603 (620)
Q Consensus 544 i~~~~~~~~~~~~rtv~n~~~-~~ty~~~~~~~--------~g~-----------~v~v~p~~l~~~~~g~~~~~~v~~~ 603 (620)
|++.+.....+++++|+|.|+ +.+|++++... .|. .+...|..|++ ++|++++++|+|+
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 345555567899999999999 99999987610 111 56778889999 9999999999999
Q ss_pred Eccc--cCCCCeEEEEEE
Q 042484 604 AKNA--SVTKDYVFGELI 619 (620)
Q Consensus 604 ~~~~--~~~~~~~~g~~~ 619 (620)
.+++ .....+..|.|.
T Consensus 80 ~p~~~~~~~~~~~eG~I~ 97 (112)
T PF06280_consen 80 PPSGLDASNGPFYEGFIT 97 (112)
T ss_dssp --GGGHHTT-EEEEEEEE
T ss_pred ehhcCCcccCCEEEEEEE
Confidence 9652 234678888764
No 63
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.26 E-value=0.0012 Score=59.50 Aligned_cols=71 Identities=25% Similarity=0.184 Sum_probs=55.9
Q ss_pred cCCCcccccEEEEEe--c--cchhHHHHHHHcCCcEEEEecCCCCCCcc-----c--CCCccccEEEeecCCccee-eec
Q 042484 303 LDPKKVKGKILVCLN--V--RSVDEGLQAALAGAADIVLVNLPEFGNDH-----T--TDRHVLPASVITFNDGYYN-LFF 370 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~--~~~~~~~~~~~~ga~gvi~~~~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l-~~~ 370 (620)
+...+++|||+|+.+ + .+..|..++.++||.|+|++++....... . .....+|.+.|+.++|+.| +.+
T Consensus 38 ~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l 117 (127)
T cd04819 38 FDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVA 117 (127)
T ss_pred cCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHH
Confidence 345679999999999 6 67899999999999999999876532110 1 1235799999999999999 877
Q ss_pred ccC
Q 042484 371 TFT 373 (620)
Q Consensus 371 ~~~ 373 (620)
+.+
T Consensus 118 ~~g 120 (127)
T cd04819 118 ERN 120 (127)
T ss_pred hcC
Confidence 764
No 64
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.25 E-value=0.00036 Score=62.87 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=54.1
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCc-ccCCCccccEEEeecCCccee-eecccCCCcEE
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGND-HTTDRHVLPASVITFNDGYYN-LFFTFTRHPVG 378 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~-~~~~~~~~p~~~i~~~~g~~l-~~~~~~~~~~~ 378 (620)
.+++|||+|++| |.+.+|..+++++||.++|+||+.+.... .......+|.+.+ ..+|+.| +.++.+...++
T Consensus 52 ~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l~~G~~vtv 127 (129)
T cd02124 52 PDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDALAAGSNVTV 127 (129)
T ss_pred ccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHHhcCCeEEE
Confidence 368999999999 99999999999999999999988753221 1222334566656 8899999 88876654443
No 65
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.20 E-value=0.00041 Score=64.51 Aligned_cols=70 Identities=10% Similarity=0.036 Sum_probs=57.1
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCC-cccC-----CCccccEEEeecCCccee-eecccCCC
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGN-DHTT-----DRHVLPASVITFNDGYYN-LFFTFTRH 375 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~-~~~~-----~~~~~p~~~i~~~~g~~l-~~~~~~~~ 375 (620)
....|+|+|++| |+|.+|..+++++||.++|++|+..... .... ....+|.++|+..+|+.| .++...+.
T Consensus 64 ~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 64 NASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred ccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 678899999999 9999999999999999999999865311 1111 245899999999999999 88776544
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.65 E-value=0.0028 Score=57.63 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCCcccccEEEEEe--c------cchhH-------HHHHHHcCCcEEEEecCCCC-------CCccc-CCCccccEEEee
Q 042484 304 DPKKVKGKILVCLN--V------RSVDE-------GLQAALAGAADIVLVNLPEF-------GNDHT-TDRHVLPASVIT 360 (620)
Q Consensus 304 ~~~~~~gkivl~~~--~------~~~~~-------~~~~~~~ga~gvi~~~~~~~-------~~~~~-~~~~~~p~~~i~ 360 (620)
+..+++|||+++.+ | .+..| ...++++||.++|+++.... +.... .....+|.+.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999 8 88887 69999999999999986421 11111 123469999999
Q ss_pred cCCccee-eecccCCCcE
Q 042484 361 FNDGYYN-LFFTFTRHPV 377 (620)
Q Consensus 361 ~~~g~~l-~~~~~~~~~~ 377 (620)
.+++..| +.++.+..+.
T Consensus 114 ~ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 114 VEDADMLERLAARGKPIR 131 (134)
T ss_pred hhcHHHHHHHHhCCCCeE
Confidence 9999999 7777665443
No 67
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=96.04 E-value=0.025 Score=46.14 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=40.8
Q ss_pred ceEEEEEEEEEcCC--CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeE
Q 042484 551 GSITVTRRVKNVGS--PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYV 614 (620)
Q Consensus 551 ~~~~~~rtv~n~~~--~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~ 614 (620)
...+++++|+|.+. ....++++..|.|-++...|.++.--++|++++++++++.+.++..+.|.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 57889999999997 46688889999998877888877533899999999999998645555554
No 68
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=94.60 E-value=0.24 Score=42.31 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=48.3
Q ss_pred ccCCCeEEeeccCceEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 538 NFNYPSITVPKLSGSITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 538 ~ln~psi~~~~~~~~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
.|++..+.++ ...+.+++|+|.+. +..|++.......-.++++|..-.+ .||++.+++|+|....
T Consensus 10 ~ldFG~v~~g---~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~ 75 (102)
T PF14874_consen 10 ELDFGNVFVG---QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK 75 (102)
T ss_pred EEEeeEEccC---CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC
Confidence 4555544433 46778889999999 9999987654234457778877777 8999999999999543
No 69
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=93.95 E-value=0.069 Score=50.82 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=34.0
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCC
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLP 341 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~ 341 (620)
..+++|||+|+.+ |.+..|..+++++||+|+|+|++.
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCH
Confidence 4578999999999 888999999999999999999875
No 70
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=93.18 E-value=0.18 Score=54.01 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=62.3
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCC------CCCcccCCCccccEEEeecCCccee-eecccCCC
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPE------FGNDHTTDRHVLPASVITFNDGYYN-LFFTFTRH 375 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~------~~~~~~~~~~~~p~~~i~~~~g~~l-~~~~~~~~ 375 (620)
....++|+++..| |.|.+|...++++||.++++.|+.. .+.........+|..+|++.+++.+ .....+++
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4568899999999 9999999999999999999999954 1223334567899999999999999 66666666
Q ss_pred cEEEEeC
Q 042484 376 PVGYIKR 382 (620)
Q Consensus 376 ~~~~i~~ 382 (620)
.++.+..
T Consensus 171 V~~~lYa 177 (541)
T KOG2442|consen 171 VELALYA 177 (541)
T ss_pred EEEEEEC
Confidence 6665543
No 71
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=92.62 E-value=1 Score=39.66 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=39.4
Q ss_pred eEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 552 SITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 552 ~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
...+++.|+|.+. +.+|.++++.++++++......+++ ++|++.++.|.+..+.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 4568899999999 9999999999889998555588999 8999999999999976
No 72
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=92.09 E-value=0.2 Score=45.89 Aligned_cols=37 Identities=16% Similarity=0.016 Sum_probs=33.5
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCC
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
-+++|||+|+.+ ..+..|..++++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 569999999999 6788999999999999999998854
No 73
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=92.03 E-value=0.25 Score=45.14 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=33.6
Q ss_pred cCCCcccccEEEEEe--c------------------cchhHHHHHHHcCCcEEEEecCCC
Q 042484 303 LDPKKVKGKILVCLN--V------------------RSVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 303 ~~~~~~~gkivl~~~--~------------------~~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
+...+++|||||+.+ | .+..|...+.++||.|+|++++..
T Consensus 41 Yag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 41 YAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred cCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 445689999999987 3 356799999999999999999865
No 74
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=91.11 E-value=0.35 Score=43.92 Aligned_cols=39 Identities=36% Similarity=0.444 Sum_probs=33.1
Q ss_pred CCCcccccEEEEEe--cc------------chhHHHHHHHcCCcEEEEecCCC
Q 042484 304 DPKKVKGKILVCLN--VR------------SVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 304 ~~~~~~gkivl~~~--~~------------~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
...+++|||||+.+ |. +..|..++.++||.|+|++++..
T Consensus 44 ~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 44 AGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred cCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 45689999999998 32 55799999999999999999854
No 75
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=89.03 E-value=0.49 Score=46.60 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=33.3
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCC
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
.-+++|||||+.+ +.+..|..+++++||.|+|++++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 4579999999988 5667899999999999999998754
No 76
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=88.56 E-value=0.69 Score=42.75 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=32.4
Q ss_pred CCCcccccEEEEEe--------------------ccchhHHHHHHHcCCcEEEEecCCC
Q 042484 304 DPKKVKGKILVCLN--------------------VRSVDEGLQAALAGAADIVLVNLPE 342 (620)
Q Consensus 304 ~~~~~~gkivl~~~--------------------~~~~~~~~~~~~~ga~gvi~~~~~~ 342 (620)
...+++|||||+.+ |.+..|..++.+.||.|||++++..
T Consensus 42 ~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~ 100 (151)
T cd04822 42 AGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPN 100 (151)
T ss_pred cCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCc
Confidence 35679999999965 2456799999999999999999864
No 77
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=87.21 E-value=8.4 Score=34.21 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=49.2
Q ss_pred CceEEEEEEEEEcCC-CceEEEEEeC----CCCe--------------E------EEEecceEEEeeCCeEEEEEEEEEE
Q 042484 550 SGSITVTRRVKNVGS-PGTYQARVKT----PQGV--------------S------VTMAPKSLKFINVGEEKSFKVNIKA 604 (620)
Q Consensus 550 ~~~~~~~rtv~n~~~-~~ty~~~~~~----~~g~--------------~------v~v~p~~l~~~~~g~~~~~~v~~~~ 604 (620)
+...+++++|+|.++ +.+|.+.+.. ..|+ . +++ |..+++ +++|+++++++++.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence 467889999999999 9999988642 1111 0 112 445888 99999999999999
Q ss_pred ccccCCCCeEEEEEE
Q 042484 605 KNASVTKDYVFGELI 619 (620)
Q Consensus 605 ~~~~~~~~~~~g~~~ 619 (620)
+. ..-.+-+.|.|.
T Consensus 104 P~-~~f~G~ilGGi~ 117 (121)
T PF06030_consen 104 PK-KAFDGIILGGIY 117 (121)
T ss_pred CC-CCcCCEEEeeEE
Confidence 87 555777777663
No 78
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=86.17 E-value=2 Score=39.27 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=58.9
Q ss_pred CCcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCcc----------cCCCccccEEEeecCCccee-eecc
Q 042484 305 PKKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGNDH----------TTDRHVLPASVITFNDGYYN-LFFT 371 (620)
Q Consensus 305 ~~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~----------~~~~~~~p~~~i~~~~g~~l-~~~~ 371 (620)
.-...+.|.|.+| |+|..|..+++++||..+|+.++....... ..+...+|++.+-..+|..+ ..++
T Consensus 83 ~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL~ 162 (193)
T KOG3920|consen 83 EIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSLK 162 (193)
T ss_pred cccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhHH
Confidence 3456789999999 999999999999999999998876532221 12457899999999999888 6666
Q ss_pred cCCCcEEEEeC
Q 042484 372 FTRHPVGYIKR 382 (620)
Q Consensus 372 ~~~~~~~~i~~ 382 (620)
.-.-+.+.|+-
T Consensus 163 r~~r~ha~i~I 173 (193)
T KOG3920|consen 163 RYFRDHAKIDI 173 (193)
T ss_pred HhCCccEEEec
Confidence 55555454443
No 79
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=85.60 E-value=9 Score=34.76 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=48.9
Q ss_pred eEEEEEEEEEcCC--CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeEEEEEEC
Q 042484 552 SITVTRRVKNVGS--PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYVFGELIW 620 (620)
Q Consensus 552 ~~~~~rtv~n~~~--~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~g~~~w 620 (620)
...+...+-|-.+ =..-.+...+-..+.+-=.|..+++ .|++.++++.+++..+ ...+.+||.++|
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS--tetGvIfG~I~Y 137 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS--TETGVIFGNIVY 137 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe--ccCCEEEEEEEE
Confidence 4445555666654 2333344445567787778999999 9999999999999975 889999999985
No 80
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=85.30 E-value=4.9 Score=34.44 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=40.8
Q ss_pred ceEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 551 GSITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
......++|+|.++ ...|++....|.. ..|.|..-.+ .||++.++.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEecc
Confidence 45677889999999 9999999888876 4567999888 8999999999998843
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.26 E-value=2.4 Score=45.63 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=53.4
Q ss_pred ceEEEEEEEEEcCC--CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeE
Q 042484 551 GSITVTRRVKNVGS--PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYV 614 (620)
Q Consensus 551 ~~~~~~rtv~n~~~--~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~ 614 (620)
...+....+.|.|+ =..-.+++..|.|-++.|+|..+-.-+||++.++++|++++.++.++.|.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~ 462 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYR 462 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEE
Confidence 56788889999998 44567888999999999999876444999999999999998767777764
No 82
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=0.56 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCCCCCcEEEEeccccCCCCcCcC
Q 042484 73 ARYGEDIIIGNLDTGVWRESKSFG 96 (620)
Q Consensus 73 ~~~G~GV~VgVIDTGId~~Hp~f~ 96 (620)
.+.|+||+|||+|||+|+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 579999999999999999999886
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=80.81 E-value=8.5 Score=41.61 Aligned_cols=64 Identities=20% Similarity=0.366 Sum_probs=51.2
Q ss_pred ceEEEEEEEEEcCC-CceEEEEEe-CCCCeEEEEec-----ceEEEeeCCeEEEEEEEEEEccccCCCCeEE
Q 042484 551 GSITVTRRVKNVGS-PGTYQARVK-TPQGVSVTMAP-----KSLKFINVGEEKSFKVNIKAKNASVTKDYVF 615 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~~ty~~~~~-~~~g~~v~v~p-----~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~ 615 (620)
.+..+++++.|.+. +.+|.+.+. .|++-+..+.- .++.+ ++||++.|+|.+.++..+..+.|-+
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Ynv 354 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTYNV 354 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCceeE
Confidence 35688999999999 999999998 78877766543 34666 8999999999999976566676654
No 84
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=78.92 E-value=11 Score=33.25 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=39.3
Q ss_pred ceEEEEEEEEEcCC-CceEEEEEeC---CC----CeEEEEecceEEEeeCCeEEEEEEEEEE
Q 042484 551 GSITVTRRVKNVGS-PGTYQARVKT---PQ----GVSVTMAPKSLKFINVGEEKSFKVNIKA 604 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~~ty~~~~~~---~~----g~~v~v~p~~l~~~~~g~~~~~~v~~~~ 604 (620)
...+.+++|+|.++ +..+.+.+.- .. .-.+-++|..+.+ +||+++++.| +..
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG 73 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec
Confidence 34566889999998 7777777653 11 1146789999999 9999999999 664
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=78.32 E-value=8.5 Score=42.07 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=46.5
Q ss_pred eEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 552 SITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 552 ~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
...++..+.|.++ +.+|.++++..++.++...+..+++ ++||+.++.|.+..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 5678899999999 9999999999889888776557888 8999999998888863
No 86
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.21 E-value=4.5 Score=42.37 Aligned_cols=67 Identities=10% Similarity=0.003 Sum_probs=52.1
Q ss_pred CcccccEEEEEe--ccchhHHHHHHHcCCcEEEEecCCCCCCccc----CCCccccEEEeecCCccee-eeccc
Q 042484 306 KKVKGKILVCLN--VRSVDEGLQAALAGAADIVLVNLPEFGNDHT----TDRHVLPASVITFNDGYYN-LFFTF 372 (620)
Q Consensus 306 ~~~~gkivl~~~--~~~~~~~~~~~~~ga~gvi~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l-~~~~~ 372 (620)
......++|+.| |+|.+|..+++++|..++|+||+........ .....++.+.++...|+.| .|...
T Consensus 76 ~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~ 149 (348)
T KOG4628|consen 76 TRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGR 149 (348)
T ss_pred CCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcc
Confidence 455678899999 8999999999999999999999876443222 2346778888888888888 66443
No 87
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=70.14 E-value=7 Score=36.43 Aligned_cols=39 Identities=31% Similarity=0.214 Sum_probs=31.0
Q ss_pred cCCCcccccEEEEEe-cc--------------------chhHHHHHHHcCCcEEEEecCC
Q 042484 303 LDPKKVKGKILVCLN-VR--------------------SVDEGLQAALAGAADIVLVNLP 341 (620)
Q Consensus 303 ~~~~~~~gkivl~~~-~~--------------------~~~~~~~~~~~ga~gvi~~~~~ 341 (620)
+..-+++||||++.. .+ ...|.+.+.+.||.|+|++...
T Consensus 43 y~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 43 YKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred ccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 446789999999986 11 2248999999999999999764
No 88
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=69.51 E-value=23 Score=29.38 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=33.0
Q ss_pred CceEEEEEEEEEcCC--CceEEEEEeCCCCeEEEEecceE-EEeeCCeEEEEEEEEEEc
Q 042484 550 SGSITVTRRVKNVGS--PGTYQARVKTPQGVSVTMAPKSL-KFINVGEEKSFKVNIKAK 605 (620)
Q Consensus 550 ~~~~~~~rtv~n~~~--~~ty~~~~~~~~g~~v~v~p~~l-~~~~~g~~~~~~v~~~~~ 605 (620)
+...+++.+|+|.|. ...+.+.+... |..+ .-..+ .| .+|+++++++++...
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 467889999999998 56666666443 3222 11222 55 789999888888874
No 89
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=66.53 E-value=42 Score=28.72 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=37.0
Q ss_pred CceEEEEEEEEEcCC-C-ceEE-----EEEeCCCCeE---EEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 550 SGSITVTRRVKNVGS-P-GTYQ-----ARVKTPQGVS---VTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 550 ~~~~~~~rtv~n~~~-~-~ty~-----~~~~~~~g~~---v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
+...++.++++|..+ . .+-+ .+++.+ |+. +......+++ +||++.++++++.+.+
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 468899999999997 5 4422 233444 553 5666667788 8999999999998865
No 90
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=65.46 E-value=17 Score=25.97 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=25.7
Q ss_pred EEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEE
Q 042484 557 RRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNI 602 (620)
Q Consensus 557 rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~ 602 (620)
++++|.|+ +..- ..+...=| -..++.+.=.+ +|||+..++|++
T Consensus 2 F~~~N~g~~~L~I-~~v~tsCg-Ct~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVI-TDVQTSCG-CTTAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEE-EEeeEccC-CEEeeCCcceE-CCCCEEEEEEEC
Confidence 57889996 3332 23333322 22334444446 899999999875
No 91
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=60.92 E-value=62 Score=26.75 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=32.4
Q ss_pred ceEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEE
Q 042484 551 GSITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIK 603 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~ 603 (620)
....+.++++|.|. ..++++.-..-. .-.|.++++ ++|++.+..+.+.
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l~ 66 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPLA 66 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEeec
Confidence 34588999999997 777776552211 113556777 7888888877773
No 92
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=58.43 E-value=18 Score=42.74 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=35.4
Q ss_pred ceEEEEEEEEEcCC-C--ceEEEEEeCCCCeEEEEec-------ceEEEeeCCeEEEEEEEEEEcc
Q 042484 551 GSITVTRRVKNVGS-P--GTYQARVKTPQGVSVTMAP-------KSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~--~ty~~~~~~~~g~~v~v~p-------~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
+..+++++|||+|+ + +.-.+-+..|.+ .+. .| .++.+ +|||++++++++...+
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 45789999999998 4 444444445533 221 23 23466 8999999999998753
No 93
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=53.25 E-value=76 Score=26.01 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=14.0
Q ss_pred ceEEEeeCCeEEEEEEEEEEcc
Q 042484 585 KSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 585 ~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
...++ +|||+++|+.+++...
T Consensus 52 ~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 52 QEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEE--TT-EEEEEEEESS--
T ss_pred eEEEE-CCCCEEEEEEEECCCC
Confidence 34577 8999999999997754
No 94
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=49.95 E-value=7.3 Score=17.34 Aligned_cols=6 Identities=50% Similarity=0.590 Sum_probs=4.5
Q ss_pred eccCCC
Q 042484 397 ALSSKG 402 (620)
Q Consensus 397 ~FSS~G 402 (620)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 578887
No 95
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=47.51 E-value=72 Score=23.68 Aligned_cols=38 Identities=26% Similarity=0.361 Sum_probs=25.5
Q ss_pred CceEEEEEEEEEcCC-Cc-eEEEEEeCCCCeEEEEecceEEE
Q 042484 550 SGSITVTRRVKNVGS-PG-TYQARVKTPQGVSVTMAPKSLKF 589 (620)
Q Consensus 550 ~~~~~~~rtv~n~~~-~~-ty~~~~~~~~g~~v~v~p~~l~~ 589 (620)
+...+++++++|.|. +. ...+.-..|+|++. .|.++++
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 468999999999998 43 34444456777554 4555554
No 96
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=46.31 E-value=40 Score=27.32 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=22.4
Q ss_pred EEEEecceEEEeeCCeEEEEEEEEEEcc
Q 042484 579 SVTMAPKSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 579 ~v~v~p~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
.|++.|..+++ ..|+++.|+++++...
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~ 30 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS 30 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC
Confidence 47788999999 7999999999976543
No 97
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=40.49 E-value=19 Score=25.26 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=18.3
Q ss_pred hhhcccCCCCCHHHHHHHHHccc
Q 042484 435 GLPKILHPDWSPAAVQSAIMTTA 457 (620)
Q Consensus 435 ALl~~~~P~~sp~~ik~~L~~TA 457 (620)
--|++.+|+|++..|+..|...-
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHcC
Confidence 34788999999999999997653
No 98
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=38.46 E-value=1.4e+02 Score=25.92 Aligned_cols=45 Identities=20% Similarity=0.480 Sum_probs=35.6
Q ss_pred ceeeeec-CCCeEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcEEeecH
Q 042484 173 GTAKGGS-PKARVAGYKACWDGMGGCYDCDIIAAFDMAIHDGVDMLSVSL 221 (620)
Q Consensus 173 g~~~GvA-P~A~l~~~kv~~~~~g~~~~~~i~~ai~~a~~~gvdVIn~Sl 221 (620)
+.|.... ++++|+.+--| |+|....++.-+++..+.|+|+|-+|-
T Consensus 28 g~F~~y~~~~~elvgf~~C----gGCpg~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 28 GAFARYDDEDVELVGFFTC----GGCPGRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred CccccCCCCCeEEEEEeeC----CCCChhHHHHHHHHHHHCCCCEEEEcC
Confidence 3455555 57888876544 458899999999999999999999987
No 99
>PLN03080 Probable beta-xylosidase; Provisional
Probab=37.17 E-value=70 Score=37.95 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=33.5
Q ss_pred eEEEEEEEEEcCC-CceEEE--EEeCCCCeEEE------EecceEEEeeCCeEEEEEEEEEE
Q 042484 552 SITVTRRVKNVGS-PGTYQA--RVKTPQGVSVT------MAPKSLKFINVGEEKSFKVNIKA 604 (620)
Q Consensus 552 ~~~~~rtv~n~~~-~~ty~~--~~~~~~g~~v~------v~p~~l~~~~~g~~~~~~v~~~~ 604 (620)
..+++++|||+|+ +....+ -+..|.. .+. +--+++.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~-~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPV-VPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCcc-CCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4789999999998 544444 3444432 111 11224566 89999999999976
No 100
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=32.71 E-value=97 Score=24.52 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=21.5
Q ss_pred CceEEEEEEEEEcCC-C-ceEEEEEeCCCCeEE
Q 042484 550 SGSITVTRRVKNVGS-P-GTYQARVKTPQGVSV 580 (620)
Q Consensus 550 ~~~~~~~rtv~n~~~-~-~ty~~~~~~~~g~~v 580 (620)
++..+++++|+|.|+ . ....+.-..|.|+++
T Consensus 40 Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 468899999999998 3 334444445777554
No 101
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=31.70 E-value=1.8e+02 Score=30.05 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=36.4
Q ss_pred eEEEEEEEEEcCC-CceEEEEEeCC----CCeEEEEecc--------------eEEEeeCCeEEEEEEEEEEc
Q 042484 552 SITVTRRVKNVGS-PGTYQARVKTP----QGVSVTMAPK--------------SLKFINVGEEKSFKVNIKAK 605 (620)
Q Consensus 552 ~~~~~rtv~n~~~-~~ty~~~~~~~----~g~~v~v~p~--------------~l~~~~~g~~~~~~v~~~~~ 605 (620)
...++.||+|..+ +.+-.+.-..| ..++|++... .+++ ++|+++++++.+...
T Consensus 243 ~~~~~itv~N~~~~~v~v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l-~~g~~~~l~~~y~v~ 314 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVTVTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTL-PPGESRTLEFSYEVE 314 (317)
T ss_pred EEEEEEEEECCCCCCEEEEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEE-CCCCEEEEEEEEEEE
Confidence 4677888999987 77766665555 3455544332 2566 889999988888764
No 102
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=31.56 E-value=2.4e+02 Score=25.24 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=22.8
Q ss_pred ccccCCCeEEeeccCceEEEEEEEEEcCC-C-----ceEEEE
Q 042484 536 LVNFNYPSITVPKLSGSITVTRRVKNVGS-P-----GTYQAR 571 (620)
Q Consensus 536 ~~~ln~psi~~~~~~~~~~~~rtv~n~~~-~-----~ty~~~ 571 (620)
.-.+|...|+|.. .-.+|+++++|.|+ + +.|-+.
T Consensus 10 ~M~Fd~~~i~V~a--~~k~vtv~l~h~G~lpk~~MgHN~Vl~ 49 (125)
T TIGR02695 10 SMQFNTKSISVPK--SCKEFTVNLKHTGKLPKAVMGHNWVLA 49 (125)
T ss_pred cccccccEEEEcC--CCcEEEEEEecCCcCchhccCccEEEe
Confidence 3456667787763 23578999999986 4 555553
No 103
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=29.21 E-value=3.2e+02 Score=22.43 Aligned_cols=61 Identities=30% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCeEEeeccCceEEEEEEEEEcCC-CceEEEEEeC-----CCCeEEEEecceEEEeeCCe-EEEEEEEEEE
Q 042484 541 YPSITVPKLSGSITVTRRVKNVGS-PGTYQARVKT-----PQGVSVTMAPKSLKFINVGE-EKSFKVNIKA 604 (620)
Q Consensus 541 ~psi~~~~~~~~~~~~rtv~n~~~-~~ty~~~~~~-----~~g~~v~v~p~~l~~~~~g~-~~~~~v~~~~ 604 (620)
-+++++....+ +++++|.-.+. .....+.+.. -+|....-...+|+| .+|| +++++|.+.-
T Consensus 8 ~~~~~V~E~~g--~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F-~~ge~~k~i~i~i~d 75 (90)
T smart00237 8 QPVYTVSESDG--EVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTF-PPGETEKCIRIKIID 75 (90)
T ss_pred CCeEEEEECCe--EEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEE-CCCCEEEEEEEEEeC
Confidence 35556555333 45555555555 5555555542 245455555778999 7887 4455555543
No 104
>PRK13203 ureB urease subunit beta; Reviewed
Probab=27.78 E-value=1.1e+02 Score=26.05 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=29.0
Q ss_pred ceEEEEEEEEEcCC-C----ceEEEEEe---------CCCCeEEEEe-cceEEEeeCCeEEEEEEEE
Q 042484 551 GSITVTRRVKNVGS-P----GTYQARVK---------TPQGVSVTMA-PKSLKFINVGEEKSFKVNI 602 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~----~ty~~~~~---------~~~g~~v~v~-p~~l~~~~~g~~~~~~v~~ 602 (620)
+..+.+++|+|.|+ + +-|++-=. ...|..+.+. -..+.| +||+++++++.-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV~ 83 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRF-EPGQTREVELVP 83 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeE-CCCCeEEEEEEE
Confidence 45667889999996 3 33433111 1123333331 123567 899999988753
No 105
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=26.78 E-value=1.3e+02 Score=25.70 Aligned_cols=51 Identities=29% Similarity=0.480 Sum_probs=29.4
Q ss_pred ceEEEEEEEEEcCC-C----ceEEEEEe---------CCCCeEEEEe-cceEEEeeCCeEEEEEEEE
Q 042484 551 GSITVTRRVKNVGS-P----GTYQARVK---------TPQGVSVTMA-PKSLKFINVGEEKSFKVNI 602 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~----~ty~~~~~---------~~~g~~v~v~-p~~l~~~~~g~~~~~~v~~ 602 (620)
+..+.+++|+|.|+ + +-|++-=. ...|..+.+. -..+.| +||+++++++.-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV~ 83 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVELVA 83 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEEEE
Confidence 45667889999996 3 33443211 1123333331 123577 899999988754
No 106
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=26.21 E-value=4e+02 Score=22.46 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=35.8
Q ss_pred ceEEEEEEEEEcCC-C-ceEEEEEeCCCCeEEE--------EecceEEEe--------eCCeEEEEEEEEEEcc
Q 042484 551 GSITVTRRVKNVGS-P-GTYQARVKTPQGVSVT--------MAPKSLKFI--------NVGEEKSFKVNIKAKN 606 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~-~ty~~~~~~~~g~~v~--------v~p~~l~~~--------~~g~~~~~~v~~~~~~ 606 (620)
+.....++|+|.+. + ..|++.+..|.+.+|. .+-..++++ ++|++.+|-+......
T Consensus 13 ~Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~~~ 86 (101)
T PF00553_consen 13 GGFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASGSG 86 (101)
T ss_dssp SEEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEESS
T ss_pred CCeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeCCC
Confidence 34556788889887 5 4688888777555442 222233332 6688888887776643
No 107
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=26.00 E-value=40 Score=25.34 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=20.8
Q ss_pred eccccchhhhhhhhhhh------hcccCCCCCHHHHHHHHH
Q 042484 420 ISGTSMSGPYISGIAGL------PKILHPDWSPAAVQSAIM 454 (620)
Q Consensus 420 ~sGTSMAaP~VAG~aAL------l~~~~P~~sp~~ik~~L~ 454 (620)
..||=+..=.|....+- +.+.||++++++|+++|.
T Consensus 14 i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 14 IRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp ETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred EcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 44665555554444322 556799999999999884
No 108
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=25.80 E-value=31 Score=22.96 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=10.6
Q ss_pred chhhhhhhhhhhh
Q 042484 425 MSGPYISGIAGLP 437 (620)
Q Consensus 425 MAaP~VAG~aALl 437 (620)
.|||.+||+++=+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 109
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=25.76 E-value=4.2e+02 Score=22.56 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=39.8
Q ss_pred EEeeccCceEEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEccccCCCCeEEEEEE
Q 042484 544 ITVPKLSGSITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAKNASVTKDYVFGELI 619 (620)
Q Consensus 544 i~~~~~~~~~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~~~~~~~~~~~g~~~ 619 (620)
+.+........++++|+| .. ..-|+-.+..+.+-.++ +.+ ..-.+-.++|.+.... +.+++|.++
T Consensus 39 l~I~F~~~~~~vtI~I~d-~~G~vVy~~~~~~~~~~~~~-----I~L-~~~~~G~Y~l~i~~~~----g~~l~G~F~ 104 (106)
T PF11589_consen 39 LSIEFESPIGDVTITIKD-STGNVVYSETVSNSAGQSIT-----IDL-NGLPSGEYTLEITNGN----GTYLYGEFT 104 (106)
T ss_dssp EEEEESS--SEEEEEEEE-TT--EEEEEEESCGGTTEEE-----EE--TTS-SEEEEEEEEECT----C-EEEEEEE
T ss_pred EEEEEcCCCCCEEEEEEe-CCCCEEEEEEccCCCCcEEE-----EEe-CCCCCccEEEEEEeCC----CCEEEEEEE
Confidence 444443445668899999 44 88888888776553443 344 3345678888887754 558899875
No 110
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=25.56 E-value=3e+02 Score=29.27 Aligned_cols=52 Identities=23% Similarity=0.387 Sum_probs=27.5
Q ss_pred CceEEEEEEEEEcCC-CceEEE----EE--eC----------------CCCeEEEEecceEEEeeCCeEEEEEEEEEEc
Q 042484 550 SGSITVTRRVKNVGS-PGTYQA----RV--KT----------------PQGVSVTMAPKSLKFINVGEEKSFKVNIKAK 605 (620)
Q Consensus 550 ~~~~~~~rtv~n~~~-~~ty~~----~~--~~----------------~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~ 605 (620)
+...+++++|||.|+ +..--= .+ .. ..| ++|+|++ -+ .|||+++++|+++-.
T Consensus 262 gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~-pI-~PGETrtl~V~a~dA 336 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNS-PI-APGETRTLTVEAQDA 336 (381)
T ss_dssp SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-H
T ss_pred CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCC-Cc-CCCceEEEEEEeehh
Confidence 367889999999997 332110 01 11 123 3445554 23 799999999998653
No 111
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=24.53 E-value=2.6e+02 Score=27.95 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=35.2
Q ss_pred eEEEEEEEEEcCC-CceEEEEEe---CC---C----------CeEEEEecceEEEeeCCeEEEEEEEEEE
Q 042484 552 SITVTRRVKNVGS-PGTYQARVK---TP---Q----------GVSVTMAPKSLKFINVGEEKSFKVNIKA 604 (620)
Q Consensus 552 ~~~~~rtv~n~~~-~~ty~~~~~---~~---~----------g~~v~v~p~~l~~~~~g~~~~~~v~~~~ 604 (620)
.....++|.|.|+ +.-+.+.+. .| . .-.+-++|..|++ .+|+++.+.|....
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg 100 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQ 100 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcC
Confidence 4445778888887 777776542 21 1 1146688999999 88888888766544
No 112
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=23.25 E-value=1.6e+02 Score=25.15 Aligned_cols=51 Identities=29% Similarity=0.477 Sum_probs=29.5
Q ss_pred ceEEEEEEEEEcCC-C----ceEEEEEe---------CCCCeEEEEe-cceEEEeeCCeEEEEEEEE
Q 042484 551 GSITVTRRVKNVGS-P----GTYQARVK---------TPQGVSVTMA-PKSLKFINVGEEKSFKVNI 602 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~----~ty~~~~~---------~~~g~~v~v~-p~~l~~~~~g~~~~~~v~~ 602 (620)
+..+.+++|+|.|+ + +-|++-=. ...|..+.+. -..+.| +||+++++++.-
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV~ 83 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVELVP 83 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEEEE
Confidence 45667889999996 3 33443211 1123333331 123577 899999988753
No 113
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=23.04 E-value=4.5e+02 Score=21.95 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=33.9
Q ss_pred eccCceEEEEEEEEEcCC---CceEEEEEeCCCCeEEEEe---cceEEEeeCCeEEEEEEEE
Q 042484 547 PKLSGSITVTRRVKNVGS---PGTYQARVKTPQGVSVTMA---PKSLKFINVGEEKSFKVNI 602 (620)
Q Consensus 547 ~~~~~~~~~~rtv~n~~~---~~ty~~~~~~~~g~~v~v~---p~~l~~~~~g~~~~~~v~~ 602 (620)
...++..+.+.+++|..+ ...|++..--..|+.+.-. ...+++ .++++.+++-..
T Consensus 20 ~~~~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l-~~~~~~~l~~~a 80 (94)
T PF07233_consen 20 SRVNGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTL-PGGQTVTLSAVA 80 (94)
T ss_dssp EECCCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE--TT-EEEEEEE-
T ss_pred EeeCCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEE-cCCCEEEEEEEC
Confidence 333577888899999997 5788888888889776422 226788 788877766543
No 114
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=23.02 E-value=9.3e+02 Score=29.22 Aligned_cols=63 Identities=25% Similarity=0.288 Sum_probs=35.1
Q ss_pred cCCCeEEeeccCceEEEEEEEEEcC-C-CceEEEEEeC-----CCCeEEEEecceEEEeeCCeE-EEEEEEEEE
Q 042484 539 FNYPSITVPKLSGSITVTRRVKNVG-S-PGTYQARVKT-----PQGVSVTMAPKSLKFINVGEE-KSFKVNIKA 604 (620)
Q Consensus 539 ln~psi~~~~~~~~~~~~rtv~n~~-~-~~ty~~~~~~-----~~g~~v~v~p~~l~~~~~g~~-~~~~v~~~~ 604 (620)
+.-++..+... ..+++++|+=.| + ..+.++.+.. -+|....-..-+|+| +|||+ ++++|.+-.
T Consensus 404 Fe~~~Y~V~En--~GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF-~PGEt~KtItV~IID 474 (928)
T TIGR00845 404 FEPGHYTCLEN--CGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVF-KPGETQKEFRIGIID 474 (928)
T ss_pred ecCCeEEEeec--CcEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEE-CCCceEEEEEEEEcc
Confidence 34455555542 334555654445 3 4455555442 345566666778999 78875 455555544
No 115
>PRK13202 ureB urease subunit beta; Reviewed
Probab=22.82 E-value=1.7e+02 Score=25.07 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=28.6
Q ss_pred EEEEEEEEEcCC-C----ceEEEEEe---------CCCCeEEEEe-cceEEEeeCCeEEEEEEEE
Q 042484 553 ITVTRRVKNVGS-P----GTYQARVK---------TPQGVSVTMA-PKSLKFINVGEEKSFKVNI 602 (620)
Q Consensus 553 ~~~~rtv~n~~~-~----~ty~~~~~---------~~~g~~v~v~-p~~l~~~~~g~~~~~~v~~ 602 (620)
.+.+++|+|.|+ + +-|++-=. ...|..+.+. -..+.| +||+++++++.-
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV~ 84 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLVP 84 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEEE
Confidence 577889999997 3 33443211 1123333331 123567 899999988763
No 116
>PRK15019 CsdA-binding activator; Provisional
Probab=22.78 E-value=47 Score=30.61 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=26.7
Q ss_pred eccccchhhhhhhhhhhhcccCCCCCHHHHHH
Q 042484 420 ISGTSMSGPYISGIAGLPKILHPDWSPAAVQS 451 (620)
Q Consensus 420 ~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~ 451 (620)
..|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 79 f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 79 FFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 33555 57999999999999999999999976
No 117
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=22.23 E-value=49 Score=30.12 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=26.9
Q ss_pred eccccchhhhhhhhhhhhcccCCCCCHHHHHH
Q 042484 420 ISGTSMSGPYISGIAGLPKILHPDWSPAAVQS 451 (620)
Q Consensus 420 ~sGTSMAaP~VAG~aALl~~~~P~~sp~~ik~ 451 (620)
..|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 74 f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 74 FYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 44556 48999999999999999999999975
No 118
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=22.20 E-value=3.7e+02 Score=26.63 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=36.4
Q ss_pred ceEEEEEEEEEcCCCceEEEEE--eCC---CCeEEEEecceEEEeeCCeEEEEEEEEEE
Q 042484 551 GSITVTRRVKNVGSPGTYQARV--KTP---QGVSVTMAPKSLKFINVGEEKSFKVNIKA 604 (620)
Q Consensus 551 ~~~~~~rtv~n~~~~~ty~~~~--~~~---~g~~v~v~p~~l~~~~~g~~~~~~v~~~~ 604 (620)
+....+++|+|.++ ..|.+.. +.. ....+-|+|.-+++ ++|+++.+.|....
T Consensus 38 ~~~~~si~v~N~~~-~p~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~~ 94 (230)
T PRK09918 38 SDGEGSINVKNTDS-NPILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILKS 94 (230)
T ss_pred CCCeEEEEEEcCCC-CcEEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEECC
Confidence 45667888999885 3455543 211 12347789999999 89999999887653
No 119
>PRK13201 ureB urease subunit beta; Reviewed
Probab=22.05 E-value=1.7e+02 Score=26.32 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=29.1
Q ss_pred ceEEEEEEEEEcCC-C----ceEEEEEe---------CCCCeEEEEe-cceEEEeeCCeEEEEEEEE
Q 042484 551 GSITVTRRVKNVGS-P----GTYQARVK---------TPQGVSVTMA-PKSLKFINVGEEKSFKVNI 602 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~----~ty~~~~~---------~~~g~~v~v~-p~~l~~~~~g~~~~~~v~~ 602 (620)
+..+.+++|+|+|+ + +-|++-=. ...|..+.+. -..+.| +||+++++++.-
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~LV~ 83 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRF-EPGDKKEVQLVE 83 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeEEEEEEE
Confidence 45667889999996 3 33443211 1123333331 123567 899999988753
No 120
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.91 E-value=72 Score=22.32 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=20.4
Q ss_pred hhhhhcccCCCCCHHHHHHHHHcc
Q 042484 433 IAGLPKILHPDWSPAAVQSAIMTT 456 (620)
Q Consensus 433 ~aALl~~~~P~~sp~~ik~~L~~T 456 (620)
.+..|++.+|+++...|+..|...
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHc
Confidence 455688999999999999999864
No 121
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.84 E-value=5.2e+02 Score=24.61 Aligned_cols=55 Identities=25% Similarity=0.439 Sum_probs=35.2
Q ss_pred CceEEEEEEEEEcCCCceEEEEEeC----CCCeEEEEe--cceE-EEeeCCeEEEEEEEEEEc
Q 042484 550 SGSITVTRRVKNVGSPGTYQARVKT----PQGVSVTMA--PKSL-KFINVGEEKSFKVNIKAK 605 (620)
Q Consensus 550 ~~~~~~~rtv~n~~~~~ty~~~~~~----~~g~~v~v~--p~~l-~~~~~g~~~~~~v~~~~~ 605 (620)
+...+++.+|.|+|+..-|.+++.. +..+++.=- ..++ ++ +||+..+.++++++.
T Consensus 37 g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i-~pg~~vsh~~vv~p~ 98 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERI-PPGENVSHSYVVRPK 98 (181)
T ss_pred CcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEE-CCCCeEEEEEEEeee
Confidence 3578899999999996667777654 234333100 1111 23 788888888888875
No 122
>PRK13205 ureB urease subunit beta; Reviewed
Probab=21.82 E-value=1.7e+02 Score=26.94 Aligned_cols=51 Identities=14% Similarity=0.323 Sum_probs=29.7
Q ss_pred ceEEEEEEEEEcCC-C----ceEEEEEeC---------CCCeEEEEe-cceEEEeeCCeEEEEEEEE
Q 042484 551 GSITVTRRVKNVGS-P----GTYQARVKT---------PQGVSVTMA-PKSLKFINVGEEKSFKVNI 602 (620)
Q Consensus 551 ~~~~~~rtv~n~~~-~----~ty~~~~~~---------~~g~~v~v~-p~~l~~~~~g~~~~~~v~~ 602 (620)
+..+++++|+|+|+ + +-|++-=.. ..|..+.+. -..+.| +||+++++++.-
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRF-EPGe~ktV~LV~ 83 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRL-EPGDARTVNLVA 83 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeE-CCCCeEEEEEEE
Confidence 45677899999997 3 334432111 123333331 123567 899999988763
No 123
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=20.38 E-value=3.4e+02 Score=26.51 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=40.9
Q ss_pred EEEEEEEEEcCC-CceEEEEEeCCCCeEEEEecceEEEeeCCeEEEEEEEEEEc
Q 042484 553 ITVTRRVKNVGS-PGTYQARVKTPQGVSVTMAPKSLKFINVGEEKSFKVNIKAK 605 (620)
Q Consensus 553 ~~~~rtv~n~~~-~~ty~~~~~~~~g~~v~v~p~~l~~~~~g~~~~~~v~~~~~ 605 (620)
.+--+.|.|.+. +.-|+++..+|...- |+|..=.+ .++++..+.|.|...
T Consensus 19 ske~~sv~NnspepvgfKVKTTaPK~Yc--VRPN~g~I-ep~stv~VeVilq~l 69 (242)
T COG5066 19 SKEMFSVQNNSPEPVGFKVKTTAPKDYC--VRPNMGLI-EPMSTVEVEVILQGL 69 (242)
T ss_pred cceeeEeecCCCCceeEEeeccCCccee--EcCCCcee-ccCCeeEEEEEeecc
Confidence 334567889998 999999999997744 57888777 899999999999864
No 124
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=20.30 E-value=4.8e+02 Score=22.24 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=29.6
Q ss_pred eEEEEEEEEEcCC-CceEE---EEEeCCCCeEEEEec---------ceEEEeeCCeEEEEEEEEEEcc
Q 042484 552 SITVTRRVKNVGS-PGTYQ---ARVKTPQGVSVTMAP---------KSLKFINVGEEKSFKVNIKAKN 606 (620)
Q Consensus 552 ~~~~~rtv~n~~~-~~ty~---~~~~~~~g~~v~v~p---------~~l~~~~~g~~~~~~v~~~~~~ 606 (620)
-..+.++|+|.++ +..+. +.+....|-...... ..-++ .||++.+..|.|..+.
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i-~pG~~~~g~l~F~vp~ 103 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETI-KPGESVTGKLVFEVPK 103 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE--TT-EEEEEEEEEEST
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEE-CCCCEEEEEEEEEECC
Confidence 4678899999987 54432 233333333332221 23466 8999999999999976
Done!