BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042485
(332 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase OS=Arabidopsis
thaliana GN=At4g06599 PE=2 SV=1
Length = 340
Score = 551 bits (1421), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/320 (83%), Positives = 290/320 (90%)
Query: 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTV 71
+ EELTLTVKW+GKEYTVR+C DDSVAELKRRIC LT VLPKRQKLLYPKIGNKL+DD++
Sbjct: 20 TEEELTLTVKWNGKEYTVRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNKLSDDSL 79
Query: 72 LLSQLPLKSSLKMTMIGTVEDEIIVDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRR 131
LLS + K SLKMTMIGTVED+IIVD +SPEI+DDFELG+EEAVD+KDKEVNKQKLRRR
Sbjct: 80 LLSSISFKPSLKMTMIGTVEDDIIVDQAESPEIVDDFELGKEEAVDVKDKEVNKQKLRRR 139
Query: 132 LSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMI 191
+ QYKI LR P R+GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMI
Sbjct: 140 IDQYKINLRTPCRQGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMI 199
Query: 192 WSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPE 251
WSATSMKWVELKM ELGVL NPNYK+TALLDHLAMITVQSD+RGIFDCKPLGLIW PE
Sbjct: 200 WSATSMKWVELKMTELGVLNNPNYKVTALLDHLAMITVQSDTRGIFDCKPLGLIWALLPE 259
Query: 252 FYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLS 311
FY+ NTIMFDDLRRNFVMNPQNGL IKPFRKAHANRD+DQELVKLTQYLL IA+L DLS
Sbjct: 260 FYNPGNTIMFDDLRRNFVMNPQNGLTIKPFRKAHANRDTDQELVKLTQYLLTIAELSDLS 319
Query: 312 NLDHGRWEFYIEDNTKRRRH 331
+L H RWE + +DN KRRR
Sbjct: 320 SLHHSRWESFSQDNVKRRRQ 339
>sp|Q5ZJJ8|UBCP1_CHICK Ubiquitin-like domain-containing CTD phosphatase 1 OS=Gallus gallus
GN=UBLCP1 PE=2 SV=1
Length = 318
Score = 349 bits (896), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 179/311 (57%), Positives = 238/311 (76%), Gaps = 5/311 (1%)
Query: 16 LTLTVKWSGKEYTV-RVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLS 74
L+L +KW G+EYT+ + +D+V +LK+ + LT VLP+RQKLL K+ K ADD V L
Sbjct: 3 LSLIIKWGGQEYTITSLSEEDTVLDLKQSLKGLTGVLPERQKLLGLKMKGKPADDDVKLG 62
Query: 75 QLPLKSSLKMTMIGTVED---EIIVDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRR 131
L LK + K+ M+GT E+ +++ P D+ ++I+DF++ +EE V+++++E N K+ RR
Sbjct: 63 ALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVINDFDI-EEEVVEVENREENLLKISRR 121
Query: 132 LSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMI 191
+ +YK+++ NP REGKKLLVLD+DYTLFDHRS AE ++LMRPYLHEFLT+AY +YDI+I
Sbjct: 122 VKEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVI 181
Query: 192 WSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPE 251
WSAT+MKW+E KM+ELGV TN NYKIT +LD AMITV + RG+ D KPLG+IW +F E
Sbjct: 182 WSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSE 241
Query: 252 FYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLS 311
+YS KNTIMFDD+ RNF+MNPQNGL I+PF KAH NRD D+EL+KLTQYL IA LDD
Sbjct: 242 YYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDFL 301
Query: 312 NLDHGRWEFYI 322
L+H WE Y+
Sbjct: 302 ELNHKHWERYL 312
>sp|Q5FWT7|UBCP1_RAT Ubiquitin-like domain-containing CTD phosphatase 1 OS=Rattus
norvegicus GN=Ublcp1 PE=2 SV=1
Length = 318
Score = 348 bits (893), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 179/311 (57%), Positives = 236/311 (75%), Gaps = 5/311 (1%)
Query: 16 LTLTVKWSGKEYTVRVCG-DDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLS 74
L + VKW G+EY+V DD+V +LK+ + LT VLP+RQKLL K+ K A++ V L
Sbjct: 3 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 62
Query: 75 QLPLKSSLKMTMIGTVED---EIIVDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRR 131
L LK + K+ M+GT E+ +++ P D+ ++I+DF++ ++E V+++++E N K+ RR
Sbjct: 63 ALKLKPNTKIMMMGTREESLEDVLCPPPDNDDVINDFDI-EDEVVEVENREENLLKISRR 121
Query: 132 LSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMI 191
+ +YK+++ NP REGKKLLVLD+DYTLFDHRS AE ++LMRPYLHEFLT+AY +YDI+I
Sbjct: 122 VKEYKVEVLNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVI 181
Query: 192 WSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPE 251
WSAT+MKW+E KM+ELGV TN NYKIT +LD AMITV + RG+ D KPLG+IW +F E
Sbjct: 182 WSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSE 241
Query: 252 FYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLS 311
FYS KNTIMFDD+ RNF+MNPQNGL I+PF KAH NRD D+ELVKLTQYL IA LDD
Sbjct: 242 FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELVKLTQYLKEIAKLDDFL 301
Query: 312 NLDHGRWEFYI 322
L+H WE Y+
Sbjct: 302 ELNHKYWERYL 312
>sp|Q8BGR9|UBCP1_MOUSE Ubiquitin-like domain-containing CTD phosphatase 1 OS=Mus musculus
GN=Ublcp1 PE=1 SV=1
Length = 318
Score = 348 bits (892), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 179/311 (57%), Positives = 236/311 (75%), Gaps = 5/311 (1%)
Query: 16 LTLTVKWSGKEYTVRVCG-DDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLS 74
L + VKW G+EY+V DD+V +LK+ + LT VLP+RQKLL K+ K A++ V L
Sbjct: 3 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 62
Query: 75 QLPLKSSLKMTMIGTVED---EIIVDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRR 131
L LK + K+ M+GT E+ +++ P D+ ++I+DF++ ++E V+++++E N K+ RR
Sbjct: 63 ALKLKPNTKIMMMGTREESLEDVLCPPPDNDDVINDFDI-EDEVVEVENREENLLKVSRR 121
Query: 132 LSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMI 191
+ +YK+++ NP REGKKLLVLD+DYTLFDHRS AE ++LMRPYLHEFLT+AY +YDI+I
Sbjct: 122 VKEYKVEVLNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVI 181
Query: 192 WSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPE 251
WSAT+MKW+E KM+ELGV TN NYKIT +LD AMITV + RG+ D KPLG+IW +F E
Sbjct: 182 WSATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSE 241
Query: 252 FYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLS 311
FYS KNTIMFDD+ RNF+MNPQNGL I+PF KAH NRD D+ELVKLTQYL IA LDD
Sbjct: 242 FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELVKLTQYLKEIAKLDDFL 301
Query: 312 NLDHGRWEFYI 322
L+H WE Y+
Sbjct: 302 ELNHKYWERYL 312
>sp|Q641F1|UBCP1_XENLA Ubiquitin-like domain-containing CTD phosphatase 1 OS=Xenopus
laevis GN=ublcp1 PE=2 SV=1
Length = 318
Score = 341 bits (874), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 176/311 (56%), Positives = 231/311 (74%), Gaps = 5/311 (1%)
Query: 16 LTLTVKWSGKEYTVRVCGD-DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLS 74
L+L +KW G+E+ + + D+V +LK + LT VLP+R KLL K K A++ V L
Sbjct: 3 LSLIIKWGGQEFPLSALSEEDTVLDLKHSLKSLTGVLPERMKLLGLKYKGKPAENDVKLG 62
Query: 75 QLPLKSSLKMTMIGTVED---EIIVDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRR 131
L LK + K+ M+GT E+ E++ P D+ E+++DF++ EE V+++++E N K+ RR
Sbjct: 63 VLRLKPNTKIMMMGTREESLEEMMAPPPDNDEVVNDFDI-DEEVVEVENREENLAKISRR 121
Query: 132 LSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMI 191
+ YK+++ NP REGKKLLVLD+DYTLFDHRS AE +LMRPYLHEFL++AY +YDI+I
Sbjct: 122 VKDYKVEVLNPPREGKKLLVLDVDYTLFDHRSCAETGQELMRPYLHEFLSSAYEDYDIVI 181
Query: 192 WSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPE 251
WSATSMKW+E KM+ELGV TN NYKIT +LD AMITV + RG+ D KPLG+IW ++ E
Sbjct: 182 WSATSMKWIEAKMKELGVTTNANYKITFMLDSAAMITVHTPRRGLVDVKPLGVIWGKYGE 241
Query: 252 FYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLS 311
FYS NTIMFDD+ RNF+MNPQNGL I+PF KAH NRD D+ELVKL+QYL IA LDDLS
Sbjct: 242 FYSKNNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELVKLSQYLKEIAQLDDLS 301
Query: 312 NLDHGRWEFYI 322
L+H WE Y+
Sbjct: 302 ELNHKHWERYL 312
>sp|Q6DI37|UBCP1_DANRE Ubiquitin-like domain-containing CTD phosphatase 1 OS=Danio rerio
GN=ublcp1 PE=2 SV=1
Length = 318
Score = 340 bits (871), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/311 (53%), Positives = 232/311 (74%), Gaps = 5/311 (1%)
Query: 16 LTLTVKWSGKEYTVRVCGD-DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLS 74
+++ +KW G+EY++ + D+V +LK+ I LT VLP+RQKLL K+ K ADD V L
Sbjct: 3 VSVIIKWGGQEYSINTLSEEDTVLDLKQSIKSLTGVLPERQKLLGLKLKGKPADDNVKLG 62
Query: 75 QLPLKSSLKMTMIGTVED---EIIVDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRR 131
L LK + K+ M+GT E+ +++ P ++ ++++DF++ +EE +++++E N K+ RR
Sbjct: 63 DLKLKPNTKIMMMGTREESLEDVLAPPPENDDVVNDFDI-EEEVTEVENREENLAKIARR 121
Query: 132 LSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMI 191
+ YK++ NP R GK+LLVLDIDYTLFDH+S AE +LMRP+LHEFLT+AY ++DI+I
Sbjct: 122 VKDYKVEELNPPRPGKRLLVLDIDYTLFDHKSCAETGHELMRPFLHEFLTSAYEDFDIVI 181
Query: 192 WSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPE 251
WSATSMKW++ KM+ELGV NPNYKIT +LD AMITV + RG+ + KPLG+IW ++ E
Sbjct: 182 WSATSMKWIDAKMKELGVTDNPNYKITFMLDSAAMITVHTPKRGVVEVKPLGVIWGKYSE 241
Query: 252 FYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLS 311
FY+ KNTIMFDD+ RNF+MNPQNGL I+PF KAH NR+ D+EL KL+QYL IA LDD S
Sbjct: 242 FYNRKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNREKDKELYKLSQYLKEIAKLDDFS 301
Query: 312 NLDHGRWEFYI 322
L+H WE Y+
Sbjct: 302 GLNHKHWERYL 312
>sp|Q28EX9|UBCP1_XENTR Ubiquitin-like domain-containing CTD phosphatase 1 OS=Xenopus
tropicalis GN=ublcp1 PE=2 SV=1
Length = 318
Score = 338 bits (868), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 175/311 (56%), Positives = 232/311 (74%), Gaps = 5/311 (1%)
Query: 16 LTLTVKWSGKEYTVRVCGD-DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLS 74
L+L +KW G+E+ + + D+V +LK + LT VLP+R KLL K K A++ V L
Sbjct: 3 LSLIIKWGGQEFPLSALSEEDTVLDLKHSLKSLTGVLPERMKLLGLKYKGKPAENDVKLG 62
Query: 75 QLPLKSSLKMTMIGTVED---EIIVDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRR 131
L LK + K+ M+GT E+ E++ P ++ E+++DF++ +EE V+++++E N K+ RR
Sbjct: 63 VLKLKPNTKIMMMGTREESLEEMMAPPPENDEVVNDFDI-EEEVVEVENREENLAKISRR 121
Query: 132 LSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMI 191
+ YKI++ NP REGKKLLVLD+DYTLFDHRS AE +LMRPYLHEFLT+AY +YDI+I
Sbjct: 122 VKDYKIEILNPPREGKKLLVLDVDYTLFDHRSCAETGQELMRPYLHEFLTSAYEDYDIVI 181
Query: 192 WSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPE 251
WSATSMKW+E KM+ELGV TN NYKIT +LD AMITV + RG+ D KPLG+IW ++ E
Sbjct: 182 WSATSMKWIEAKMKELGVSTNSNYKITFMLDSAAMITVHTPRRGLVDVKPLGVIWGKYGE 241
Query: 252 FYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLS 311
FY+ NTIMFDD+ RNF+MNPQNGL I+PF KAH NRD D+EL+KL+QYL IA LDDLS
Sbjct: 242 FYNKNNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLSQYLKEIAQLDDLS 301
Query: 312 NLDHGRWEFYI 322
L+H WE Y+
Sbjct: 302 ELNHKHWERYL 312
>sp|Q8WVY7|UBCP1_HUMAN Ubiquitin-like domain-containing CTD phosphatase 1 OS=Homo sapiens
GN=UBLCP1 PE=1 SV=2
Length = 318
Score = 336 bits (861), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/310 (56%), Positives = 230/310 (74%), Gaps = 3/310 (0%)
Query: 16 LTLTVKWSGKEYTVRVCG-DDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLS 74
L + VKW G+EY+V DD+V +LK+ + LT VLP+RQKLL K+ K A++ V L
Sbjct: 3 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 62
Query: 75 QLPLKSSLKMTMIGTVEDEI--IVDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRRL 132
L LK + K+ M+GT E+ + ++ P + + + ++E V+++++E N K+ RR+
Sbjct: 63 ALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISRRV 122
Query: 133 SQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIW 192
+YK+++ NP REGKKLLVLD+DYTLFDHRS AE ++LMRPYLHEFLT+AY +YDI+IW
Sbjct: 123 KEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVIW 182
Query: 193 SATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEF 252
SAT+MKW+E KM+ELGV TN NYKIT +LD AMITV + RG+ D KPLG+IW +F EF
Sbjct: 183 SATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSEF 242
Query: 253 YSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLSN 312
YS KNTIMFDD+ RNF+MNPQNGL I+PF KAH NRD D+EL+KLTQYL IA LDD +
Sbjct: 243 YSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDFLD 302
Query: 313 LDHGRWEFYI 322
L+H WE Y+
Sbjct: 303 LNHKYWERYL 312
>sp|Q2KJD7|UBCP1_BOVIN Ubiquitin-like domain-containing CTD phosphatase 1 OS=Bos taurus
GN=UBLCP1 PE=2 SV=1
Length = 318
Score = 336 bits (861), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/310 (56%), Positives = 230/310 (74%), Gaps = 3/310 (0%)
Query: 16 LTLTVKWSGKEYTVRVCG-DDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLS 74
L + VKW G+EY+V DD+V +LK+ + LT VLP+RQKLL K+ K A++ V L
Sbjct: 3 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 62
Query: 75 QLPLKSSLKMTMIGTVEDEI--IVDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRRL 132
L LK + K+ M+GT E+ + ++ P + + + ++E V+++++E N K+ RR+
Sbjct: 63 ALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISRRV 122
Query: 133 SQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIW 192
+YK+++ NP REGKKLLVLD+DYTLFDHRS AE ++LMRPYLHEFLT+AY +YDI+IW
Sbjct: 123 KEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVIW 182
Query: 193 SATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEF 252
SAT+MKW+E KM+ELGV TN NYKIT +LD AMITV + RG+ D KPLG+IW +F EF
Sbjct: 183 SATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSEF 242
Query: 253 YSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLSN 312
YS KNTIMFDD+ RNF+MNPQNGL I+PF KAH NRD D+EL+KLTQYL IA LDD +
Sbjct: 243 YSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKELLKLTQYLKEIAKLDDFLD 302
Query: 313 LDHGRWEFYI 322
L+H WE Y+
Sbjct: 303 LNHKYWERYL 312
>sp|Q5R4C4|UBCP1_PONAB Ubiquitin-like domain-containing CTD phosphatase 1 OS=Pongo abelii
GN=UBLCP1 PE=2 SV=1
Length = 318
Score = 333 bits (855), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 173/310 (55%), Positives = 228/310 (73%), Gaps = 3/310 (0%)
Query: 16 LTLTVKWSGKEYTVRVCG-DDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLS 74
L + VKW G+EY+V DD+V +LK+ + LT VLP+RQKLL K+ K A++ V L
Sbjct: 3 LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 62
Query: 75 QLPLKSSLKMTMIGTVEDEI--IVDPVDSPEIIDDFELGQEEAVDIKDKEVNKQKLRRRL 132
L LK + K+ M+GT E+ + ++ P + + + ++E V+++++E N K+ RR+
Sbjct: 63 ALKLKPNTKIMMMGTREESLEDVLGPPPDNDDVVNDFDIEDEVVEVENREENLLKISRRV 122
Query: 133 SQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIW 192
+YK+++ NP REGKKLLVLD+DYTLFDHRS AE ++LMRPYLHEFLT+AY +YDI+IW
Sbjct: 123 KEYKVEILNPPREGKKLLVLDVDYTLFDHRSCAETGVELMRPYLHEFLTSAYEDYDIVIW 182
Query: 193 SATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEF 252
SAT+MKW+E KM+ELGV TN NYKIT +LD AMITV + RG+ D KPLG+IW +F EF
Sbjct: 183 SATNMKWIEAKMKELGVSTNANYKITFMLDSAAMITVHTPRRGLIDVKPLGVIWGKFSEF 242
Query: 253 YSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYLLAIADLDDLSN 312
YS KNTIMFDD+ RNF+MNPQNGL I+PF KAH NRD D+ L+KLTQYL IA LDD
Sbjct: 243 YSKKNTIMFDDIGRNFLMNPQNGLKIRPFMKAHLNRDKDKGLLKLTQYLKEIAKLDDFLG 302
Query: 313 LDHGRWEFYI 322
L+H WE Y+
Sbjct: 303 LNHKYWERYL 312
>sp|Q91FG9|VF355_IIV6 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 6 GN=IIV6-355R PE=3 SV=1
Length = 182
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 159 FDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKIT 218
FD ++ + L RPYL FL + +++ IW+A S + +EE + +P+ KI
Sbjct: 34 FDFKNMEDYYLICGRPYLQPFLDYLFKNFNVHIWTAASKGYASFIIEEFILKKDPSRKIN 93
Query: 219 -ALLDHLAMIT--VQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNG 275
L DH ++ V + + L IW + EF +NT + DDL +N
Sbjct: 94 LVLFDHHCRVSKRVYKKEKASKKLEMLWTIW-KLQEF-DKENTFIIDDLEEVKESQVKNC 151
Query: 276 LAIKPFRKAHANRDSDQELVKLTQYL 301
++KPF + + DQEL++L L
Sbjct: 152 FSVKPFFFMENDSEYDQELMRLKDVL 177
>sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1271.03c PE=4 SV=1
Length = 244
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 26/192 (13%)
Query: 141 NPSREGKKLLVLDIDYTLF-------DHRSTAE---NPLQLMRPYLHEFLTAAYAEYDIM 190
N + + +KL++LD++ TL +S E NP+ RP LH FL +A + +M
Sbjct: 17 NGATDNRKLVILDLNGTLLCRALAVRSEKSVYEASRNPIP--RPGLHNFLKYIFANFSVM 74
Query: 191 IWSATSMKWVELKMEELGVLTNPNYK--ITALLDHLAM-ITVQSDSRGIFDCKPLGLIWD 247
++S++ V+ L + N K + A + M +T R + K L +W+
Sbjct: 75 VFSSSKPHNVQ---AMLSAIMNEEQKKALIACWTRVDMKLTKHQFDRKVQTYKNLDTVWE 131
Query: 248 QF-------PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF-RKAHANRDSDQELVKLTQ 299
+ P +S NTI+ DD + +P N +A+ F K+H+N D EL + +
Sbjct: 132 KIHHDSTGKPVSWSQYNTIIVDDSKTKCAAHPYNHIAVSDFVAKSHSNIPKDIELACVIR 191
Query: 300 YLLAIADLDDLS 311
YL + + ++S
Sbjct: 192 YLKHLKSVPNVS 203
>sp|Q92353|UBP6_SCHPO Ubiquitin carboxyl-terminal hydrolase 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubp6 PE=1 SV=2
Length = 468
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQ 75
+ + ++W GK+Y + + +++ + LK ++ LT V P+RQK++ G +L DD VLL
Sbjct: 3 IPIAIRWQGKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVK--GGQLKDD-VLLGS 59
Query: 76 LPLKSSLKMTMIGTVEDEIIVDPV 99
+ +K + + M+GT + P+
Sbjct: 60 VGIKPNATLLMMGTAGELPTAMPI 83
>sp|Q196V6|VF355_IIV3 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 3 GN=IIV3-104L PE=3 SV=1
Length = 186
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 147 KKLLVLDIDYTLF---------DHRSTAENPLQLM------------RPYLHEFLTAAYA 185
KKL++LD+D TL D + ++ Q RP+L EFL +
Sbjct: 6 KKLILLDLDNTLICAEDLDTVKDKKRLSQAQKQFRTVRMEDYYDIFERPHLQEFLDYLFK 65
Query: 186 EYDIMIWSATSMKWVELKMEELGVL----TNPNYKITALLDHLAMITVQSDSRGIFDCKP 241
+ + +W+A+S + ++ P+ KI L + +GI K
Sbjct: 66 NFKVGVWTASSKDYAIFVIKNFITAPQNKVKPDRKIEIFLCSHHCNVSKKYFKGI--SKD 123
Query: 242 LGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLTQYL 301
L L+ DQ+ S+ ++ DDL + P+N + +KPF N +D EL+K+ + L
Sbjct: 124 LKLVTDQWKIIDLSQVKLV-DDLEKLANHQPENVIHVKPFFYDEPNSKNDTELLKVQKTL 182
>sp|P0C895|Y2010_ARATH LRR repeats and ubiquitin-like domain-containing protein
At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1
SV=1
Length = 374
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQ 75
+ LTVK+ GK + V D +V +LK ++ +TNVLP+ QKL++ K+ +T L Q
Sbjct: 13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK---GKVLVETSTLKQ 69
Query: 76 LPLKSSLKMTMIGT 89
+ S K+ ++ +
Sbjct: 70 SDVGSGAKLMLMAS 83
>sp|P43593|UBP6_YEAST Ubiquitin carboxyl-terminal hydrolase 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP6 PE=1 SV=1
Length = 499
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTV 71
S E ++ SGK Y + + D + A+LK + ELT V RQK + G ++++
Sbjct: 2 SGETFEFNIRHSGKVYPITLSTDATSADLKSKAEELTQVPSARQKYMVK--GGLSGEESI 59
Query: 72 LLSQLPLKSSLKMTMIGTVEDEIIVDPVDSPEIIDDFELGQE 113
+ L +K + ++GT + +I P I+D Q+
Sbjct: 60 KIYPL-IKPGSTVMLLGTPDANLISKPAKKNNFIEDLAPEQQ 100
>sp|C1BXU5|UBL4A_ESOLU Ubiquitin-like protein 4A OS=Esox lucius GN=ubl4a PE=2 SV=1
Length = 154
Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+ LTVK GKE V+V D+ V+ +K + E N+ P +Q+LLY G LAD+
Sbjct: 1 MILTVKPLQGKECNVQVTEDEKVSTVKELVSERLNIPPNQQRLLYK--GKALADE 53
>sp|Q78JW9|UBFD1_MOUSE Ubiquitin domain-containing protein UBFD1 OS=Mus musculus GN=Ubfd1
PE=1 SV=2
Length = 368
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 68/132 (51%), Gaps = 9/132 (6%)
Query: 1 MASSSSSSTASSSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60
+++ + E + L + W+ ++ V+V D + +ELK++I +T + P QK++Y
Sbjct: 130 VSNGEDAGGGVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY- 188
Query: 61 KIGNKLADDTVLLSQLPLKSSLKMTMIGTVEDEIIVDPVDSPEIIDDFELGQEEAVDIKD 120
L + L ++ + S K+ ++G+ ++++ V++P+ D +A + K
Sbjct: 189 ---KGLVPEDKTLREIKVTSGAKIMVVGSTINDVLA--VNTPK---DAAQQDAKAEENKK 240
Query: 121 KEVNKQKLRRRL 132
+ + +QK R++
Sbjct: 241 EPLCRQKQHRKV 252
>sp|O14562|UBFD1_HUMAN Ubiquitin domain-containing protein UBFD1 OS=Homo sapiens GN=UBFD1
PE=1 SV=2
Length = 309
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 69/137 (50%), Gaps = 14/137 (10%)
Query: 1 MASSSSSSTASSSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60
+++ + + E + L + W+ ++ V+ D + +ELK++I +T + P QK++Y
Sbjct: 71 VSNGEDAGGGAGRELVDLKIIWNKTKHDVKFPLDSTGSELKQKIHSITGLPPAMQKVMY- 129
Query: 61 KIGNKLADDTVLLSQLPLKSSLKMTMIGTVEDEIIVDPVDSPEIIDDFELGQEEAVDIKD 120
L + L ++ + S K+ ++G+ ++++ V++P+ + Q+ D K
Sbjct: 130 ---KGLVPEDKTLREIKVTSGAKIMVVGSTINDVLA--VNTPK-----DAAQQ---DAKA 176
Query: 121 KEVNKQKLRRRLSQYKI 137
+E K+ L R+ K+
Sbjct: 177 EENKKEPLCRQKQHRKV 193
>sp|Q17361|UBP14_CAEEL Ubiquitin carboxyl-terminal hydrolase 14 OS=Caenorhabditis
elegans GN=usp-14 PE=2 SV=2
Length = 489
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 18 LTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLP 77
+ VKW ++Y V V K ++ LT V+P+RQK++ +G L DD +
Sbjct: 4 VNVKWQKEKYVVEVDTSAPPMVFKAQLFALTQVVPERQKVVI--MGRTLGDDD--WEGIT 59
Query: 78 LKSSLKMTMIGTV 90
+K ++ + M+G+V
Sbjct: 60 IKENMTIMMMGSV 72
>sp|Q2NHE8|GATB_METST Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Methanosphaera stadtmanae (strain DSM 3091) GN=gatB
PE=3 SV=1
Length = 452
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 44 ICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVEDEIIVDPVD--- 100
I EL N++ +Q + P+ +KL + + P + +M +IG VED+ IV+ ++
Sbjct: 346 IVELINLIESKQ--VTPEAAHKLIEQMPGNDKTPTEIGNEMDIIGVVEDDAIVNAINQAI 403
Query: 101 --SPEIIDDFELGQEEAVD 117
+P ++D++ G++ AV+
Sbjct: 404 EENPNAVEDYKNGKDNAVN 422
>sp|Q10XD8|MEND_TRIEI 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Trichodesmium erythraeum (strain IMS101)
GN=menD PE=3 SV=1
Length = 582
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 220 LLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQ 273
L+ HL +I + + GIF+ P+ F EF+++ I F DL + + + Q
Sbjct: 483 LVGHLTIILINNQGGGIFEMLPIANFEPPFTEFFATPQEIDFADLCKTYGLEHQ 536
>sp|C1BGZ8|UB4AA_ONCMY Ubiquitin-like protein 4A-A OS=Oncorhynchus mykiss GN=ubl4aa PE=2
SV=1
Length = 154
Score = 35.0 bits (79), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+ LTVK GKE V+V D+ V+ +K + E N+ +Q+LLY G LAD+
Sbjct: 1 MILTVKPLQGKECNVQVTEDEKVSTVKELVSERLNIPASQQRLLYK--GKALADE 53
>sp|Q7MGL1|PURK_VIBVY N5-carboxyaminoimidazole ribonucleotide synthase OS=Vibrio
vulnificus (strain YJ016) GN=purK PE=3 SV=1
Length = 377
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 20 VKWSGKE-------YTVRVCGDDSVAELKRRICELTNVLPKR 54
+ W GKE + VCGD S EL+RR+C L NVL ++
Sbjct: 323 IHWYGKEKRAGRKMGHINVCGDYS-GELQRRLCALANVLDEK 363
>sp|B5XFI8|UB4AA_SALSA Ubiquitin-like protein 4A-A OS=Salmo salar GN=ubl4aa PE=2 SV=1
Length = 154
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+ LTVK GKE V+V D+ V+ +K + E N+ +Q+LLY G LAD+
Sbjct: 1 MILTVKPLQGKECNVQVTEDEKVSTVKELVSERLNIPANQQRLLYK--GKALADE 53
>sp|Q8DDD8|PURK_VIBVU N5-carboxyaminoimidazole ribonucleotide synthase OS=Vibrio
vulnificus (strain CMCP6) GN=purK PE=3 SV=1
Length = 377
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 20 VKWSGKE-------YTVRVCGDDSVAELKRRICELTNVLPKR 54
+ W GKE + VCGD S EL+RR+C L NVL ++
Sbjct: 323 IHWYGKEKRAGRKMGHINVCGDYS-GELQRRLCALANVLDEK 363
>sp|Q6GZT9|037R_FRG3G uncharacterized protein 037R OS=Frog virus 3 (isolate Goorha)
GN=FV3-037R PE=4 SV=1
Length = 209
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAE-YDIMIWSATSMKWVELK 203
+G+K L + +LF R+ + + RP L FL +A Y I +W+A S +
Sbjct: 54 DGRKRLATRL--SLFK-RTVLTDHIMCWRPTLRTFLNGLFASGYKINVWTAASKPYA--- 107
Query: 204 MEELGVLTNPNYKITALLDHLAMITVQSDSRG-IFDCKPL-GLIWDQFPEFYSSKNTIMF 261
+E + L +Y + L +T Q +G + K L GL + P NT +
Sbjct: 108 LEVVKALNLKSYGMGLL------VTAQDYPKGSVKRLKYLTGLDAVKIPL----SNTAIV 157
Query: 262 DDLRRNFVMNPQNGLAIKPFRKAHANRDSDQ--ELVKLTQYLLAIA 305
DD P + IKPF + AN + EL ++T L IA
Sbjct: 158 DDREEVKRAQPTRAVHIKPFTASSANTACSESDELKRVTASLAIIA 203
>sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup211 PE=1 SV=1
Length = 1837
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 135 YKIKLRNPSREGKKLLVLDIDYTLF-DHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWS 193
Y+ +LRN KKLL + Y L D R EN L ++ YL E ++ YD ++
Sbjct: 62 YEQQLRNSE---KKLLQSNERYDLLEDERKLLENELSQIKEYLREKSSS----YDTVLHD 114
Query: 194 ATSMKWVELKMEELGVLTNPNYKITALLDHL 224
+S+K V E L + N K TA L +L
Sbjct: 115 CSSLKSVN---EALKQAQDQNLKQTAQLQNL 142
>sp|C3KHF2|UBL4A_ANOFI Ubiquitin-like protein 4A OS=Anoplopoma fimbria GN=ubl4a PE=2
SV=1
Length = 156
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+ LTVK GKE +V+V D+ V+ +K + E N+ +Q+LLY G L+D+
Sbjct: 1 MILTVKPLQGKECSVQVTEDEKVSTVKELVSERLNIPANQQRLLYK--GKALSDE 53
>sp|B5X9S9|UB4AB_SALSA Ubiquitin-like protein 4A-B OS=Salmo salar GN=ubl4ab PE=2 SV=1
Length = 151
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+ LT+K GKE V+V D+ V+ +K + E N+ +Q+LLY G LAD+
Sbjct: 1 MILTIKPLQGKECNVQVTEDEKVSMVKELVSERLNIPANQQRLLYK--GKALADE 53
>sp|Q54LV1|RAD23_DICDI UV excision repair protein RAD23 homolog OS=Dictyostelium
discoideum GN=rcbA PE=1 SV=1
Length = 342
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 16 LTLTVKWSGKE-YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLS 74
+ +T+K KE Y V GD +VAELK I E N P Q L+Y G L D L S
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISEKHNQTPSWQTLIYS--GKILEDKRTLES 58
Query: 75 QLPLKSSLKMTMI 87
S + MI
Sbjct: 59 YNITDSGFIVMMI 71
>sp|C1BHN7|UB4AB_ONCMY Ubiquitin-like protein 4A-B OS=Oncorhynchus mykiss GN=ubl4ab PE=2
SV=1
Length = 151
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+ LT+K GKE V+V D+ V+ +K + E N+ +Q+LLY G LAD+
Sbjct: 1 MILTIKPLKGKECNVQVTEDEKVSMVKELVSERLNIPANQQRLLYK--GKALADE 53
>sp|B7K8M6|MEND_CYAP7 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Cyanothece sp. (strain PCC 7424) GN=menD
PE=3 SV=1
Length = 581
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 208 GVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDL 264
G L N ++ HL +I V +D GIF+ P+ F +F+++ T+ F L
Sbjct: 475 GFLINKKFR-----GHLTIILVNNDGGGIFEMLPIAQFDPYFEDFFATPQTVNFGKL 526
>sp|Q7ZWB2|UBL4A_DANRE Ubiquitin-like protein 4A OS=Danio rerio GN=ubl4a PE=2 SV=1
Length = 157
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+ LTVK GKE V+V ++ V+ +K + E N+ +Q+LLY G LAD+
Sbjct: 1 MILTVKPLQGKECNVQVTENEKVSTVKELVSERLNIPASQQRLLYK--GKALADE 53
>sp|Q0W363|VATA_UNCMA V-type ATP synthase alpha chain OS=Uncultured methanogenic archaeon
RC-I GN=atpA PE=3 SV=1
Length = 579
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Query: 21 KWSGKEYTVRV-CGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLL---SQL 76
KWS E V + CG+ R E+T VL + L PK GN L D TVL+ S +
Sbjct: 244 KWSDAEIVVYIGCGE--------RGNEMTEVLAEFPHLTDPKTGNPLMDRTVLIANTSNM 295
Query: 77 PLKS 80
P+ +
Sbjct: 296 PVAA 299
>sp|Q2T9Q2|UBL4B_BOVIN Ubiquitin-like protein 4B OS=Bos taurus GN=UBL4B PE=2 SV=1
Length = 165
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 18 LTVKWS-GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVL 72
LTVK G+ +++V G +SVA LK+ + E +V ++Q LL+ G LADD L
Sbjct: 3 LTVKLLLGRRCSLKVSGQESVAMLKKLVSERLHVPEEQQHLLF--RGQLLADDKRL 56
>sp|Q09787|YA99_SCHPO Uncharacterized protein C13G6.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC13G6.09 PE=4 SV=1
Length = 274
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 116 VDIKDKEVNKQKLRRRLSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPY 175
VD + KE NK+++ +L K+ NPS E D+ + F R + P Q+MR Y
Sbjct: 122 VDAEPKEENKKEIPEKLKNVKVDTENPSAEPYTKAKGDVSFLKFQKR-LSRAPDQIMRYY 180
>sp|Q9CQ84|UBL4B_MOUSE Ubiquitin-like protein 4B OS=Mus musculus GN=Ubl4b PE=2 SV=1
Length = 188
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 18 LTVKWS-GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVL 72
LTVK G+ +++V G +SVA LK+ + + V ++Q LL+ G LADD L
Sbjct: 3 LTVKLLLGRRCSLKVSGKESVATLKKLVSQHLQVPEEQQHLLFR--GQLLADDKYL 56
>sp|Q09695|YA22_SCHPO Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2F7.02c PE=1 SV=1
Length = 325
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 53/194 (27%)
Query: 145 EGKKLLVLDIDYTLFDHRSTAENPLQLM----------------RPYLHEFLTAAYAEYD 188
EGKK L+LD+D TL P + RP + EFL ++
Sbjct: 155 EGKKCLILDLDETLVHSSFKYIEPADFVVSIEIDGLQHDVRVVKRPGVDEFLKKMGDMFE 214
Query: 189 IMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMI--------TVQSDSRGIFDCK 240
I++++A+ K+ + + +LDH +I + + D
Sbjct: 215 IVVFTASLAKYAD--------------PVLDMLDHSHVIRHRLFREACCNYEGNFVKDLS 260
Query: 241 PLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKP-FRKAHANRDSDQELVKLTQ 299
LG + +++I+ D+ +++ +P + + I F H D EL+ L
Sbjct: 261 QLG---------RNLEDSIIIDNSPSSYIFHPSHAVPISSWFNDMH-----DMELIDLIP 306
Query: 300 YLLAIADLDDLSNL 313
+L +A + D+S +
Sbjct: 307 FLEHLARVPDVSTV 320
>sp|B7K0T5|MEND_CYAP8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
synthase OS=Cyanothece sp. (strain PCC 8801) GN=menD
PE=3 SV=1
Length = 591
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 208 GVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRN 267
G L NP+++ HL +I + ++ GIF+ P+ F F+++ + F L +
Sbjct: 474 GFLINPHFR-----GHLTIILINNNGGGIFEMLPISDFNPLFEAFFATPQNLDFSQLCQT 528
Query: 268 FVMN-------PQNGLAIKPFRKA 284
+ + PQ +KP KA
Sbjct: 529 YKIPYQKIRDWPQIEKLLKPLPKA 552
>sp|P60051|UBP14_PANTR Ubiquitin carboxyl-terminal hydrolase 14 OS=Pan troglodytes
GN=USP14 PE=3 SV=2
Length = 493
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 17 TLTVKWSGKEY-TVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQ 75
++TVKW +++ V + D+ K ++ LT V P RQK++ G L DD
Sbjct: 5 SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK--GGTLKDDD--WGN 60
Query: 76 LPLKSSLKMTMIGTVEDEIIVDPVDSPEIIDD 107
+ +K+ + + M+G+ D + +P ++D
Sbjct: 61 IKIKNGMTLLMMGSA-DALPEEPSAKTVFVED 91
>sp|P0C031|RUB2_ORYSJ Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica
GN=RUB2 PE=2 SV=2
Length = 153
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 22 WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+GKE + + D++ +K R+ E + P +Q+L+Y G +LADD
Sbjct: 84 LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYA--GKQLADD 129
>sp|Q8RUC6|RUB2_ARATH Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2
PE=1 SV=3
Length = 154
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 22 WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+GKE + + D++ +K R+ E + P +Q+L+Y G +LADD
Sbjct: 84 LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYA--GKQLADD 129
>sp|P54578|UBP14_HUMAN Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14
PE=1 SV=3
Length = 494
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 17 TLTVKWSGKEY-TVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQ 75
++TVKW +++ V + D+ K ++ LT V P RQK++ G L DD
Sbjct: 5 SVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVK--GGTLKDDD--WGN 60
Query: 76 LPLKSSLKMTMIGTVE 91
+ +K+ + + M+G+ +
Sbjct: 61 IKIKNGMTLLMMGSAD 76
>sp|O14399|UBL1_SCHPO Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ubl1 PE=3 SV=1
Length = 78
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 23 SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+GKE + + +D V+ +K R+ E + P +Q+L+Y G ++ADD
Sbjct: 9 TGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYA--GKQMADD 53
>sp|B7NZQ9|UBL4A_RABIT Ubiquitin-like protein 4A OS=Oryctolagus cuniculus GN=UBL4A PE=3
SV=1
Length = 157
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLAD 68
+ LTVK G+E ++V D+ V+ LK+ + E NV ++Q+LL+ G LAD
Sbjct: 1 MQLTVKALQGRECNLQVPEDEQVSTLKQLVSEKLNVPVRQQRLLFK--GKALAD 52
>sp|P11441|UBL4A_HUMAN Ubiquitin-like protein 4A OS=Homo sapiens GN=UBL4A PE=1 SV=1
Length = 157
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLAD 68
+ LTVK G+E +++V D+ V+ LK+ + E NV ++Q+LL+ G LAD
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK--GKALAD 52
>sp|Q9SHE7|RUB1_ARATH Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1
PE=1 SV=3
Length = 156
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 22 WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+GKE + + D++ +K R+ E + P +Q+L+Y G +LADD
Sbjct: 84 LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYA--GKQLADD 129
>sp|P0C032|RUB3_ORYSJ Ubiquitin-like protein-NEDD8-like protein RUB3 OS=Oryza sativa
subsp. japonica GN=RUB3 PE=3 SV=2
Length = 154
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 22 WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD 69
+GKE + + D+V +K R+ E + P +Q+L+Y G +LADD
Sbjct: 84 LTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYG--GKQLADD 129
>sp|Q5R4T1|UBL4A_PONAB Ubiquitin-like protein 4A OS=Pongo abelii GN=UBL4A PE=2 SV=1
Length = 157
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLAD 68
+ LTVK G+E +++V D+ V+ LK+ + E NV ++Q+LL+ G LAD
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK--GKALAD 52
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,515,703
Number of Sequences: 539616
Number of extensions: 4930496
Number of successful extensions: 15439
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 15371
Number of HSP's gapped (non-prelim): 84
length of query: 332
length of database: 191,569,459
effective HSP length: 118
effective length of query: 214
effective length of database: 127,894,771
effective search space: 27369480994
effective search space used: 27369480994
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)