Query 042485
Match_columns 332
No_of_seqs 307 out of 2268
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042485.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042485hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02245 HAD_IIID1 HAD-superf 100.0 3.1E-52 6.7E-57 368.3 16.7 195 127-321 1-195 (195)
2 KOG1605 TFIIF-interacting CTD 100.0 4.5E-34 9.8E-39 261.6 8.4 160 140-319 82-261 (262)
3 TIGR02251 HIF-SF_euk Dullard-l 100.0 3.8E-31 8.3E-36 228.8 13.7 145 147-309 1-162 (162)
4 PF03031 NIF: NLI interacting 100.0 1.4E-30 3E-35 223.9 11.3 146 148-311 1-159 (159)
5 KOG2832 TFIIF-interacting CTD 99.9 6.6E-24 1.4E-28 198.5 13.3 161 140-320 182-345 (393)
6 TIGR02250 FCP1_euk FCP1-like p 99.9 7.2E-24 1.6E-28 182.1 11.1 123 144-283 3-155 (156)
7 KOG1872 Ubiquitin-specific pro 99.9 7.2E-24 1.6E-28 203.8 3.0 181 15-207 3-190 (473)
8 cd01813 UBP_N UBP ubiquitin pr 99.8 2.3E-21 5.1E-26 146.0 8.1 74 16-89 1-74 (74)
9 smart00577 CPDc catalytic doma 99.8 9.7E-21 2.1E-25 161.3 12.2 125 146-284 1-144 (148)
10 COG5190 FCP1 TFIIF-interacting 99.7 1.9E-18 4.2E-23 166.1 7.2 159 138-316 203-380 (390)
11 cd01812 BAG1_N Ubiquitin-like 99.7 1.4E-16 3.1E-21 118.5 7.9 70 16-88 1-70 (71)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 1.4E-15 3.1E-20 114.1 7.7 70 15-87 1-71 (73)
13 cd01807 GDX_N ubiquitin-like d 99.6 1.3E-15 2.9E-20 114.5 7.4 72 16-90 1-73 (74)
14 cd01804 midnolin_N Ubiquitin-l 99.6 7.2E-15 1.6E-19 111.8 8.2 74 16-93 2-76 (78)
15 cd01805 RAD23_N Ubiquitin-like 99.6 9E-15 2E-19 110.6 7.9 72 16-90 1-75 (77)
16 cd01792 ISG15_repeat1 ISG15 ub 99.6 1.1E-14 2.3E-19 111.4 7.7 75 14-91 1-78 (80)
17 cd01797 NIRF_N amino-terminal 99.5 1.7E-14 3.8E-19 109.6 7.2 73 16-91 1-76 (78)
18 cd01794 DC_UbP_C dendritic cel 99.5 1.6E-14 3.5E-19 107.5 6.3 67 19-88 2-69 (70)
19 cd01793 Fubi Fubi ubiquitin-li 99.5 2.2E-14 4.8E-19 107.9 7.0 71 16-90 1-71 (74)
20 cd01809 Scythe_N Ubiquitin-lik 99.5 4.3E-14 9.4E-19 105.2 7.2 70 16-88 1-71 (72)
21 cd01798 parkin_N amino-termina 99.5 4.2E-14 9E-19 105.2 6.6 68 18-88 1-69 (70)
22 cd01810 ISG15_repeat2 ISG15 ub 99.5 4.3E-14 9.3E-19 106.3 6.5 69 18-89 1-70 (74)
23 cd01800 SF3a120_C Ubiquitin-li 99.5 6.2E-14 1.3E-18 106.1 6.7 68 21-91 4-71 (76)
24 PF00240 ubiquitin: Ubiquitin 99.5 9.9E-14 2.2E-18 102.6 7.6 66 22-90 3-68 (69)
25 cd01802 AN1_N ubiquitin-like d 99.5 9E-14 2E-18 111.2 7.6 72 15-89 27-99 (103)
26 PTZ00044 ubiquitin; Provisiona 99.5 9.5E-14 2.1E-18 104.8 7.1 72 16-90 1-73 (76)
27 cd01796 DDI1_N DNA damage indu 99.5 9.8E-14 2.1E-18 103.6 6.3 65 19-86 2-69 (71)
28 cd01806 Nedd8 Nebb8-like ubiq 99.5 2.7E-13 5.9E-18 102.0 7.9 72 16-90 1-73 (76)
29 cd01803 Ubiquitin Ubiquitin. U 99.4 3E-13 6.6E-18 101.7 7.5 72 16-90 1-73 (76)
30 cd01808 hPLIC_N Ubiquitin-like 99.4 2.9E-13 6.2E-18 101.0 6.6 69 16-88 1-70 (71)
31 cd01790 Herp_N Homocysteine-re 99.4 5.5E-13 1.2E-17 101.0 6.5 71 15-88 1-78 (79)
32 KOG0323 TFIIF-interacting CTD 99.4 5.5E-13 1.2E-17 135.2 8.5 121 148-283 147-298 (635)
33 smart00213 UBQ Ubiquitin homol 99.3 1.9E-12 4.1E-17 93.7 6.3 64 16-82 1-64 (64)
34 TIGR00601 rad23 UV excision re 99.3 7.1E-12 1.5E-16 121.6 7.4 73 16-91 1-77 (378)
35 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 1.1E-11 2.3E-16 92.8 4.8 54 32-88 18-74 (75)
36 cd01769 UBL Ubiquitin-like dom 99.2 3.6E-11 7.8E-16 88.1 7.2 66 20-88 2-68 (69)
37 KOG0005 Ubiquitin-like protein 99.2 1.4E-11 3E-16 86.3 4.4 69 16-87 1-70 (70)
38 cd01799 Hoil1_N Ubiquitin-like 99.2 3.5E-11 7.5E-16 90.8 6.9 61 23-87 11-73 (75)
39 KOG0010 Ubiquitin-like protein 99.2 4.7E-11 1E-15 116.6 9.1 77 12-91 12-88 (493)
40 cd01763 Sumo Small ubiquitin-r 99.1 9.9E-10 2.2E-14 85.2 9.4 77 11-90 7-84 (87)
41 cd01795 USP48_C USP ubiquitin- 99.1 2.8E-10 6E-15 88.5 5.7 60 26-88 16-76 (107)
42 KOG0011 Nucleotide excision re 99.0 3.4E-10 7.3E-15 105.5 6.4 74 16-92 1-77 (340)
43 TIGR01685 MDP-1 magnesium-depe 99.0 3E-10 6.4E-15 99.3 4.6 130 147-283 2-158 (174)
44 KOG0003 Ubiquitin/60s ribosoma 99.0 1.4E-10 3E-15 90.8 1.6 72 18-92 4-75 (128)
45 cd01789 Alp11_N Ubiquitin-like 99.0 4.5E-09 9.8E-14 81.0 9.1 72 16-89 2-81 (84)
46 KOG0004 Ubiquitin/40S ribosoma 98.9 6.2E-10 1.3E-14 93.3 3.5 70 16-88 1-71 (156)
47 PF14560 Ubiquitin_2: Ubiquiti 98.9 1.3E-08 2.7E-13 78.9 8.6 75 15-89 1-83 (87)
48 cd01814 NTGP5 Ubiquitin-like N 98.8 6.8E-09 1.5E-13 83.0 4.4 74 14-90 3-91 (113)
49 TIGR01681 HAD-SF-IIIC HAD-supe 98.7 1.5E-08 3.1E-13 84.2 4.7 61 148-208 1-68 (128)
50 PLN03243 haloacid dehalogenase 98.7 1.6E-08 3.5E-13 94.0 4.8 98 171-283 109-210 (260)
51 PRK14988 GMP/IMP nucleotidase; 98.7 5.7E-08 1.2E-12 88.2 7.3 92 171-277 93-188 (224)
52 TIGR01662 HAD-SF-IIIA HAD-supe 98.6 1.3E-07 2.7E-12 78.3 8.7 111 148-278 1-127 (132)
53 PF11976 Rad60-SLD: Ubiquitin- 98.6 9.8E-08 2.1E-12 71.0 6.9 69 16-87 1-71 (72)
54 COG0637 Predicted phosphatase/ 98.6 2.3E-08 4.9E-13 90.8 2.7 99 170-283 85-187 (221)
55 TIGR01656 Histidinol-ppas hist 98.6 1.2E-07 2.7E-12 80.3 6.8 119 148-278 1-141 (147)
56 PRK13288 pyrophosphatase PpaX; 98.6 5.7E-08 1.2E-12 87.1 4.8 95 171-281 82-181 (214)
57 PLN02575 haloacid dehalogenase 98.6 5.3E-08 1.2E-12 94.8 4.7 98 171-283 216-317 (381)
58 TIGR02253 CTE7 HAD superfamily 98.6 1E-07 2.2E-12 85.5 6.3 96 171-281 94-194 (221)
59 cd01788 ElonginB Ubiquitin-lik 98.6 4E-07 8.6E-12 72.7 8.7 72 15-89 2-80 (119)
60 PLN02770 haloacid dehalogenase 98.5 5.5E-08 1.2E-12 89.6 4.2 97 171-282 108-208 (248)
61 PRK10725 fructose-1-P/6-phosph 98.5 4.7E-08 1E-12 85.5 3.0 94 172-281 89-185 (188)
62 PRK11587 putative phosphatase; 98.5 9.8E-08 2.1E-12 86.0 4.6 97 171-283 83-183 (218)
63 TIGR01993 Pyr-5-nucltdase pyri 98.5 1.3E-07 2.8E-12 82.7 4.6 94 172-278 85-181 (184)
64 PLN02560 enoyl-CoA reductase 98.5 3.2E-07 6.9E-12 87.1 7.4 71 17-87 2-81 (308)
65 TIGR01449 PGP_bact 2-phosphogl 98.5 9.2E-08 2E-12 85.2 3.3 96 171-282 85-185 (213)
66 PRK13226 phosphoglycolate phos 98.5 1.4E-07 3E-12 85.8 4.4 96 171-281 95-194 (229)
67 TIGR01454 AHBA_synth_RP 3-amin 98.5 1.2E-07 2.5E-12 84.4 3.8 96 171-281 75-174 (205)
68 TIGR01428 HAD_type_II 2-haloal 98.5 1.3E-07 2.9E-12 83.6 3.8 93 172-279 93-189 (198)
69 TIGR00213 GmhB_yaeD D,D-heptos 98.4 4.8E-07 1E-11 79.0 7.0 124 148-278 2-146 (176)
70 PRK09449 dUMP phosphatase; Pro 98.4 6.2E-07 1.3E-11 80.8 6.6 93 172-279 96-193 (224)
71 PF12689 Acid_PPase: Acid Phos 98.4 2.7E-07 5.9E-12 80.2 4.0 120 147-275 3-144 (169)
72 TIGR03351 PhnX-like phosphonat 98.4 5.5E-07 1.2E-11 80.8 6.1 95 171-278 87-186 (220)
73 cd01801 Tsc13_N Ubiquitin-like 98.4 9.1E-07 2E-11 66.9 6.3 69 17-86 2-74 (77)
74 PRK08942 D,D-heptose 1,7-bisph 98.4 1.2E-06 2.6E-11 76.7 7.9 123 147-281 3-146 (181)
75 TIGR02009 PGMB-YQAB-SF beta-ph 98.4 2.1E-07 4.6E-12 80.9 3.0 91 171-278 88-182 (185)
76 PRK13225 phosphoglycolate phos 98.4 4.2E-07 9.2E-12 85.1 5.1 93 172-281 143-238 (273)
77 COG4996 Predicted phosphatase 98.4 1.1E-06 2.3E-11 72.3 6.6 125 149-283 2-147 (164)
78 PRK10826 2-deoxyglucose-6-phos 98.3 4E-07 8.7E-12 82.1 4.4 98 171-283 92-193 (222)
79 TIGR01509 HAD-SF-IA-v3 haloaci 98.3 4.2E-07 9E-12 78.7 4.2 92 171-278 85-180 (183)
80 PF13419 HAD_2: Haloacid dehal 98.3 1.1E-07 2.4E-12 80.8 0.5 95 169-278 75-173 (176)
81 TIGR02254 YjjG/YfnB HAD superf 98.3 5.7E-07 1.2E-11 80.6 4.9 96 171-281 97-197 (224)
82 TIGR01422 phosphonatase phosph 98.3 7.7E-07 1.7E-11 81.9 5.8 97 172-282 100-201 (253)
83 PRK13223 phosphoglycolate phos 98.3 6.7E-07 1.5E-11 83.6 5.1 92 172-278 102-197 (272)
84 TIGR01684 viral_ppase viral ph 98.3 1.3E-06 2.8E-11 81.8 6.4 61 145-210 124-186 (301)
85 PRK10563 6-phosphogluconate ph 98.3 9.4E-07 2E-11 79.4 5.3 95 171-281 88-185 (221)
86 PF11543 UN_NPL4: Nuclear pore 98.2 3.6E-06 7.8E-11 64.2 6.9 72 15-86 4-77 (80)
87 PRK13222 phosphoglycolate phos 98.2 1.4E-06 2.9E-11 78.3 5.2 95 170-280 92-191 (226)
88 TIGR01664 DNA-3'-Pase DNA 3'-p 98.2 5.3E-06 1.2E-10 72.0 8.8 118 143-277 9-157 (166)
89 PLN02940 riboflavin kinase 98.2 7.6E-07 1.6E-11 87.3 3.6 97 171-282 93-194 (382)
90 PRK06769 hypothetical protein; 98.2 2.4E-06 5.2E-11 74.5 6.4 123 146-282 3-137 (173)
91 TIGR01261 hisB_Nterm histidino 98.2 2.8E-06 6.1E-11 73.4 6.7 125 147-283 1-148 (161)
92 KOG0001 Ubiquitin and ubiquiti 98.2 7E-06 1.5E-10 59.7 7.9 67 22-91 7-73 (75)
93 TIGR00338 serB phosphoserine p 98.2 2.6E-06 5.6E-11 76.4 6.7 103 171-278 85-191 (219)
94 cd01427 HAD_like Haloacid deha 98.2 1.9E-06 4.1E-11 69.7 4.9 62 149-210 1-64 (139)
95 PLN02954 phosphoserine phospha 98.2 3.5E-06 7.5E-11 75.9 7.0 105 171-277 84-191 (224)
96 PHA03398 viral phosphatase sup 98.2 2.7E-06 6E-11 79.7 6.4 61 145-210 126-188 (303)
97 TIGR02247 HAD-1A3-hyp Epoxide 98.2 1.3E-06 2.9E-11 77.9 4.1 98 171-283 94-197 (211)
98 TIGR01990 bPGM beta-phosphoglu 98.2 9.1E-07 2E-11 76.9 2.5 92 171-279 87-182 (185)
99 PRK06698 bifunctional 5'-methy 98.2 1.7E-06 3.8E-11 86.7 4.5 96 171-281 330-426 (459)
100 PHA02597 30.2 hypothetical pro 98.2 1.5E-06 3.3E-11 76.8 3.6 100 171-283 74-175 (197)
101 PRK09456 ?-D-glucose-1-phospha 98.1 1.7E-06 3.8E-11 76.7 4.0 98 171-283 84-186 (199)
102 PRK13478 phosphonoacetaldehyde 98.1 5.9E-06 1.3E-10 76.8 7.6 97 172-282 102-203 (267)
103 KOG4248 Ubiquitin-like protein 98.1 2.8E-06 6E-11 89.5 5.6 70 15-88 2-72 (1143)
104 KOG3109 Haloacid dehalogenase- 98.1 3.6E-06 7.8E-11 75.0 5.5 98 171-277 100-200 (244)
105 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.1 4E-06 8.8E-11 73.7 5.8 104 171-279 80-187 (201)
106 COG1011 Predicted hydrolase (H 98.1 5.5E-06 1.2E-10 74.4 5.8 93 170-277 98-194 (229)
107 TIGR02252 DREG-2 REG-2-like, H 98.1 6.4E-06 1.4E-10 72.9 6.1 90 172-277 106-200 (203)
108 TIGR01686 FkbH FkbH-like domai 98.0 8.5E-06 1.8E-10 78.0 6.7 108 146-270 2-118 (320)
109 PLN02779 haloacid dehalogenase 98.0 8.5E-06 1.8E-10 76.8 6.6 99 172-283 145-247 (286)
110 cd00196 UBQ Ubiquitin-like pro 98.0 1.9E-05 4.2E-10 54.5 6.2 63 23-88 6-68 (69)
111 PRK09552 mtnX 2-hydroxy-3-keto 97.9 3.1E-05 6.6E-10 69.8 7.8 101 170-278 73-183 (219)
112 TIGR01663 PNK-3'Pase polynucle 97.9 4.5E-05 9.8E-10 77.5 9.3 107 142-265 163-294 (526)
113 PF13881 Rad60-SLD_2: Ubiquiti 97.9 6.2E-05 1.3E-09 61.0 8.1 66 15-83 2-76 (111)
114 PHA02530 pseT polynucleotide k 97.9 3.1E-05 6.7E-10 73.0 7.2 146 130-282 138-296 (300)
115 PLN02919 haloacid dehalogenase 97.9 1.3E-05 2.9E-10 87.8 5.1 98 172-283 162-263 (1057)
116 TIGR01548 HAD-SF-IA-hyp1 haloa 97.8 5.6E-05 1.2E-09 66.8 7.0 79 175-269 110-192 (197)
117 TIGR01549 HAD-SF-IA-v1 haloaci 97.8 4.2E-05 9E-10 64.6 5.9 80 172-270 65-149 (154)
118 TIGR01489 DKMTPPase-SF 2,3-dik 97.8 7.1E-05 1.5E-09 65.0 7.3 100 170-275 71-182 (188)
119 TIGR01672 AphA HAD superfamily 97.8 0.00013 2.7E-09 67.0 9.0 114 149-281 65-210 (237)
120 PRK11133 serB phosphoserine ph 97.8 3.3E-05 7.2E-10 74.0 5.3 133 140-279 103-288 (322)
121 PRK13582 thrH phosphoserine ph 97.8 3.2E-05 6.9E-10 68.5 4.7 99 172-278 69-167 (205)
122 TIGR01668 YqeG_hyp_ppase HAD s 97.7 5.3E-05 1.1E-09 65.8 5.6 107 145-281 23-135 (170)
123 PTZ00445 p36-lilke protein; Pr 97.7 5E-05 1.1E-09 67.9 5.1 128 145-283 41-206 (219)
124 TIGR01493 HAD-SF-IA-v2 Haloaci 97.7 8.5E-06 1.8E-10 70.4 0.1 77 172-269 91-170 (175)
125 COG0546 Gph Predicted phosphat 97.7 5.6E-05 1.2E-09 68.3 4.8 95 171-281 89-188 (220)
126 KOG3493 Ubiquitin-like protein 97.6 2.7E-05 5.8E-10 55.8 1.8 68 16-86 2-70 (73)
127 PRK05446 imidazole glycerol-ph 97.6 0.00034 7.4E-09 67.8 9.5 124 146-281 1-147 (354)
128 PRK10748 flavin mononucleotide 97.5 5.7E-05 1.2E-09 69.0 3.0 86 174-279 116-205 (238)
129 PF05152 DUF705: Protein of un 97.5 0.00092 2E-08 62.2 10.4 61 146-210 121-182 (297)
130 cd01811 OASL_repeat1 2'-5' oli 97.5 0.00066 1.4E-08 50.3 7.5 74 16-90 1-77 (80)
131 TIGR01670 YrbI-phosphatas 3-de 97.5 0.00011 2.3E-09 62.9 3.6 108 148-278 2-115 (154)
132 PRK08238 hypothetical protein; 97.4 0.00042 9.1E-09 69.9 7.2 64 146-209 9-111 (479)
133 PF08817 YukD: WXG100 protein 97.4 0.00054 1.2E-08 51.9 6.1 72 15-86 2-78 (79)
134 KOG4495 RNA polymerase II tran 97.4 0.00037 8.1E-09 54.0 5.1 63 16-79 3-65 (110)
135 PF08645 PNK3P: Polynucleotide 97.3 0.0012 2.6E-08 56.8 8.8 103 148-266 1-129 (159)
136 COG0560 SerB Phosphoserine pho 97.3 0.00025 5.5E-09 64.0 4.1 104 170-278 76-185 (212)
137 TIGR02137 HSK-PSP phosphoserin 97.1 0.00031 6.7E-09 62.9 3.1 41 170-210 67-107 (203)
138 TIGR01488 HAD-SF-IB Haloacid D 97.1 0.00058 1.3E-08 58.7 4.6 40 171-210 73-113 (177)
139 KOG2914 Predicted haloacid-hal 97.1 0.00054 1.2E-08 62.2 3.9 101 170-283 91-197 (222)
140 COG2179 Predicted hydrolase of 97.0 0.0017 3.6E-08 56.0 6.4 123 144-303 25-156 (175)
141 KOG0006 E3 ubiquitin-protein l 96.9 0.0015 3.3E-08 61.1 5.5 59 26-87 15-75 (446)
142 TIGR01490 HAD-SF-IB-hyp1 HAD-s 96.9 0.00092 2E-08 59.0 3.9 98 171-272 87-188 (202)
143 PRK09484 3-deoxy-D-manno-octul 96.8 0.001 2.2E-08 58.4 3.5 111 146-279 20-136 (183)
144 PF11470 TUG-UBL1: GLUT4 regul 96.8 0.003 6.6E-08 46.1 5.2 64 20-86 2-65 (65)
145 PRK11590 hypothetical protein; 96.7 0.002 4.4E-08 57.7 4.5 38 172-209 96-135 (211)
146 PRK11009 aphA acid phosphatase 96.6 0.0049 1.1E-07 56.6 6.6 113 147-278 63-207 (237)
147 COG3882 FkbH Predicted enzyme 96.6 0.0059 1.3E-07 60.6 7.3 125 145-282 220-355 (574)
148 TIGR01544 HAD-SF-IE haloacid d 96.6 0.016 3.5E-07 54.3 10.0 98 169-270 119-226 (277)
149 PF13344 Hydrolase_6: Haloacid 96.6 0.0043 9.3E-08 49.2 5.2 53 150-211 1-58 (101)
150 KOG3206 Alpha-tubulin folding 96.5 0.0088 1.9E-07 52.9 7.2 79 16-94 2-86 (234)
151 COG0561 Cof Predicted hydrolas 96.5 0.0049 1.1E-07 56.9 6.0 58 146-210 2-60 (264)
152 TIGR01533 lipo_e_P4 5'-nucleot 96.5 0.008 1.7E-07 56.1 7.1 65 145-209 73-160 (266)
153 PF09419 PGP_phosphatase: Mito 96.4 0.0095 2.1E-07 51.8 6.9 60 144-209 38-107 (168)
154 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.4 0.0056 1.2E-07 56.0 5.7 57 146-210 7-66 (242)
155 COG5417 Uncharacterized small 96.3 0.017 3.7E-07 42.8 6.6 68 16-86 7-80 (81)
156 PRK00192 mannosyl-3-phosphogly 96.3 0.0075 1.6E-07 56.2 6.1 57 147-210 4-61 (273)
157 TIGR03333 salvage_mtnX 2-hydro 96.3 0.0047 1E-07 55.4 4.5 39 170-208 69-108 (214)
158 TIGR01689 EcbF-BcbF capsule bi 96.2 0.0072 1.6E-07 50.1 4.7 52 148-201 2-55 (126)
159 TIGR01545 YfhB_g-proteo haloac 96.1 0.0089 1.9E-07 53.8 5.1 39 171-209 94-134 (210)
160 PF06888 Put_Phosphatase: Puta 96.1 0.0085 1.8E-07 54.9 4.9 41 170-210 70-113 (234)
161 TIGR02461 osmo_MPG_phos mannos 96.1 0.013 2.8E-07 53.2 6.1 54 149-210 1-55 (225)
162 TIGR02463 MPGP_rel mannosyl-3- 96.1 0.01 2.3E-07 53.1 5.4 54 149-209 1-55 (221)
163 smart00775 LNS2 LNS2 domain. T 95.9 0.018 3.8E-07 49.5 5.9 58 149-206 1-66 (157)
164 TIGR01487 SPP-like sucrose-pho 95.9 0.017 3.7E-07 51.6 5.9 55 148-209 2-57 (215)
165 PRK10513 sugar phosphate phosp 95.8 0.027 5.8E-07 52.0 7.2 57 147-210 3-60 (270)
166 PF00789 UBX: UBX domain; Int 95.7 0.09 2E-06 39.7 8.5 74 12-86 3-80 (82)
167 TIGR02726 phenyl_P_delta pheny 95.7 0.014 3E-07 50.9 4.4 114 146-282 6-125 (169)
168 PRK03669 mannosyl-3-phosphogly 95.7 0.023 5E-07 52.8 6.2 58 145-209 5-63 (271)
169 PF08282 Hydrolase_3: haloacid 95.7 0.017 3.7E-07 51.7 5.1 54 150-210 1-55 (254)
170 PF10302 DUF2407: DUF2407 ubiq 95.7 0.022 4.7E-07 45.0 5.0 48 27-77 14-65 (97)
171 PRK10530 pyridoxal phosphate ( 95.7 0.029 6.3E-07 51.6 6.7 56 147-209 3-59 (272)
172 PRK01158 phosphoglycolate phos 95.6 0.026 5.6E-07 50.7 6.1 56 147-209 3-59 (230)
173 PRK12702 mannosyl-3-phosphogly 95.6 0.026 5.7E-07 53.3 6.2 57 147-210 1-58 (302)
174 PRK10444 UMP phosphatase; Prov 95.6 0.024 5.1E-07 52.4 5.8 52 148-207 2-54 (248)
175 TIGR00099 Cof-subfamily Cof su 95.6 0.023 4.9E-07 52.2 5.6 54 149-209 1-55 (256)
176 PLN02811 hydrolase 95.6 0.016 3.5E-07 52.0 4.5 99 171-282 78-184 (220)
177 PRK10976 putative hydrolase; P 95.4 0.033 7.3E-07 51.3 5.9 56 147-209 2-58 (266)
178 KOG1769 Ubiquitin-like protein 95.3 0.26 5.7E-06 38.8 9.8 77 13-92 18-95 (99)
179 TIGR01486 HAD-SF-IIB-MPGP mann 95.3 0.031 6.7E-07 51.4 5.6 54 149-209 1-55 (256)
180 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.3 0.035 7.7E-07 51.4 5.9 59 148-210 2-64 (257)
181 TIGR01456 CECR5 HAD-superfamil 95.3 0.04 8.7E-07 52.8 6.4 55 149-211 2-65 (321)
182 PLN02645 phosphoglycolate phos 95.3 0.034 7.3E-07 53.0 5.9 56 147-210 28-87 (311)
183 PRK15126 thiamin pyrimidine py 95.2 0.042 9.1E-07 50.9 6.1 56 147-209 2-58 (272)
184 COG0241 HisB Histidinol phosph 95.2 0.045 9.8E-07 48.1 5.9 118 147-277 5-144 (181)
185 TIGR01691 enolase-ppase 2,3-di 95.2 0.028 6E-07 51.0 4.7 98 170-281 94-195 (220)
186 KOG1639 Steroid reductase requ 95.2 0.04 8.6E-07 50.3 5.5 71 17-87 2-77 (297)
187 smart00166 UBX Domain present 95.2 0.19 4.1E-06 37.9 8.5 72 14-86 3-78 (80)
188 TIGR01452 PGP_euk phosphoglyco 95.1 0.064 1.4E-06 50.1 7.2 57 147-211 2-62 (279)
189 PF11019 DUF2608: Protein of u 95.1 0.11 2.5E-06 48.0 8.6 134 146-285 19-212 (252)
190 KOG0013 Uncharacterized conser 95.0 0.031 6.7E-07 49.7 4.2 70 16-88 148-217 (231)
191 COG5190 FCP1 TFIIF-interacting 94.8 0.025 5.5E-07 55.3 3.6 119 146-280 25-172 (390)
192 KOG3085 Predicted hydrolase (H 94.7 0.034 7.4E-07 50.9 3.9 88 174-277 116-208 (237)
193 TIGR01484 HAD-SF-IIB HAD-super 94.7 0.062 1.3E-06 47.4 5.5 52 149-206 1-53 (204)
194 TIGR01457 HAD-SF-IIA-hyp2 HAD- 94.7 0.094 2E-06 48.3 6.9 55 148-210 2-60 (249)
195 PRK10187 trehalose-6-phosphate 94.6 0.066 1.4E-06 49.9 5.7 60 146-207 13-74 (266)
196 KOG3120 Predicted haloacid deh 94.4 0.093 2E-06 47.4 5.7 64 146-209 12-124 (256)
197 PF06941 NT5C: 5' nucleotidase 94.3 0.056 1.2E-06 47.6 4.3 28 171-198 73-101 (191)
198 TIGR01482 SPP-subfamily Sucros 94.3 0.076 1.7E-06 47.4 5.2 53 150-209 1-54 (225)
199 COG2503 Predicted secreted aci 94.1 0.065 1.4E-06 49.0 4.3 59 139-197 71-149 (274)
200 PTZ00174 phosphomannomutase; P 94.0 0.11 2.3E-06 47.8 5.7 53 146-205 4-57 (247)
201 PRK14502 bifunctional mannosyl 93.7 0.16 3.5E-06 53.1 6.8 58 145-209 414-472 (694)
202 TIGR01675 plant-AP plant acid 93.6 0.21 4.5E-06 45.7 6.7 68 142-209 72-162 (229)
203 TIGR01485 SPP_plant-cyano sucr 93.6 0.14 3E-06 46.9 5.6 63 147-214 1-64 (249)
204 PLN02887 hydrolase family prot 93.6 0.14 3E-06 53.0 6.2 58 146-210 307-365 (580)
205 PF12754 Blt1: Cell-cycle cont 93.2 0.025 5.5E-07 53.2 0.0 78 12-92 75-184 (309)
206 cd01772 SAKS1_UBX SAKS1-like U 93.1 0.82 1.8E-05 34.5 8.2 70 15-86 4-77 (79)
207 PF13019 Telomere_Sde2: Telome 93.1 0.39 8.4E-06 41.4 7.1 65 16-80 1-71 (162)
208 COG0647 NagD Predicted sugar p 93.0 0.19 4.1E-06 47.0 5.6 54 146-207 7-61 (269)
209 COG4502 5'(3')-deoxyribonucleo 92.9 0.28 6.1E-06 41.3 5.7 86 171-283 68-155 (180)
210 smart00666 PB1 PB1 domain. Pho 92.6 0.58 1.3E-05 35.0 6.8 44 16-59 2-45 (81)
211 PLN02423 phosphomannomutase 92.2 0.31 6.7E-06 44.8 5.9 48 146-200 6-53 (245)
212 cd01767 UBX UBX (ubiquitin reg 92.2 1.2 2.6E-05 33.2 8.1 68 15-84 2-73 (77)
213 TIGR01460 HAD-SF-IIA Haloacid 92.1 0.21 4.6E-06 45.5 4.6 52 150-209 1-57 (236)
214 COG1877 OtsB Trehalose-6-phosp 92.1 0.32 6.9E-06 45.4 5.8 60 144-205 15-76 (266)
215 cd06406 PB1_P67 A PB1 domain i 92.0 0.76 1.6E-05 34.9 6.6 42 17-59 4-45 (80)
216 PF05822 UMPH-1: Pyrimidine 5' 91.3 1.1 2.4E-05 41.4 8.2 100 168-271 87-195 (246)
217 COG4359 Uncharacterized conser 90.9 0.55 1.2E-05 41.4 5.6 39 170-208 72-111 (220)
218 cd01774 Faf1_like2_UBX Faf1 ik 90.7 2.6 5.6E-05 32.3 8.6 71 14-86 3-82 (85)
219 cd01773 Faf1_like1_UBX Faf1 ik 90.6 3 6.4E-05 31.9 8.7 70 15-86 5-78 (82)
220 COG3769 Predicted hydrolase (H 90.6 0.81 1.7E-05 41.5 6.4 58 145-210 5-63 (274)
221 PF00564 PB1: PB1 domain; Int 90.5 1.3 2.8E-05 33.2 6.9 45 15-59 1-46 (84)
222 PLN02151 trehalose-phosphatase 90.4 0.45 9.7E-06 46.3 5.1 59 144-204 95-153 (354)
223 PF03767 Acid_phosphat_B: HAD 89.9 0.17 3.7E-06 46.1 1.7 65 145-209 70-157 (229)
224 PRK06437 hypothetical protein; 89.7 1.6 3.5E-05 31.8 6.5 54 23-88 9-62 (67)
225 cd01771 Faf1_UBX Faf1 UBX doma 89.7 3.7 8.1E-05 31.1 8.7 71 14-86 3-77 (80)
226 TIGR00685 T6PP trehalose-phosp 89.4 0.37 8.1E-06 44.1 3.6 49 146-196 2-52 (244)
227 cd01770 p47_UBX p47-like ubiqu 89.3 2.3 5E-05 32.1 7.3 69 15-85 4-75 (79)
228 PRK08364 sulfur carrier protei 88.5 3.1 6.8E-05 30.5 7.4 58 18-87 5-64 (70)
229 cd06407 PB1_NLP A PB1 domain i 88.5 2 4.3E-05 32.8 6.4 37 16-52 1-37 (82)
230 KOG4549 Magnesium-dependent ph 88.4 2.3 5E-05 35.2 7.0 64 146-209 4-84 (144)
231 PLN02580 trehalose-phosphatase 88.3 0.88 1.9E-05 44.8 5.4 59 145-205 117-175 (384)
232 PLN03017 trehalose-phosphatase 88.2 0.83 1.8E-05 44.6 5.2 57 145-203 109-165 (366)
233 PRK14501 putative bifunctional 88.1 0.76 1.7E-05 49.0 5.4 58 146-205 491-550 (726)
234 KOG0012 DNA damage inducible p 88.0 1.5 3.2E-05 42.3 6.6 77 14-93 1-80 (380)
235 KOG1615 Phosphoserine phosphat 87.3 1.1 2.4E-05 39.8 4.9 94 171-270 88-188 (227)
236 PF05116 S6PP: Sucrose-6F-phos 86.9 0.47 1E-05 43.6 2.6 61 147-215 2-63 (247)
237 cd06396 PB1_NBR1 The PB1 domai 86.6 3 6.5E-05 31.8 6.3 36 16-51 1-38 (81)
238 cd05992 PB1 The PB1 domain is 85.7 2.6 5.5E-05 31.3 5.7 43 16-58 1-44 (81)
239 TIGR01511 ATPase-IB1_Cu copper 85.5 1.9 4.1E-05 44.6 6.4 106 145-278 383-489 (562)
240 TIGR02471 sucr_syn_bact_C sucr 85.4 1.1 2.3E-05 40.6 4.1 54 149-210 1-54 (236)
241 KOG2982 Uncharacterized conser 85.4 1.3 2.8E-05 42.2 4.6 59 28-86 351-414 (418)
242 PF14836 Ubiquitin_3: Ubiquiti 84.6 4.9 0.00011 31.1 6.7 60 26-86 15-77 (88)
243 PF15044 CLU_N: Mitochondrial 84.0 1.7 3.7E-05 32.6 3.9 54 31-87 1-56 (76)
244 TIGR01680 Veg_Stor_Prot vegeta 83.9 2.3 4.9E-05 39.9 5.5 60 145-204 99-179 (275)
245 TIGR02958 sec_mycoba_snm4 secr 83.4 8.1 0.00018 38.9 9.7 73 16-88 3-79 (452)
246 PF08235 LNS2: LNS2 (Lipin/Ned 82.8 1.5 3.3E-05 37.7 3.6 50 149-198 1-55 (157)
247 PRK06488 sulfur carrier protei 82.6 5.5 0.00012 28.5 6.1 59 19-88 2-60 (65)
248 KOG2134 Polynucleotide kinase 80.3 2.6 5.6E-05 41.3 4.6 58 139-196 67-130 (422)
249 COG5227 SMT3 Ubiquitin-like pr 79.5 9.5 0.00021 29.6 6.5 67 15-84 24-91 (103)
250 cd06398 PB1_Joka2 The PB1 doma 79.4 8.6 0.00019 29.9 6.5 43 17-59 2-49 (91)
251 cd06397 PB1_UP1 Uncharacterize 78.8 8.2 0.00018 29.3 5.9 43 17-59 2-44 (82)
252 cd00754 MoaD Ubiquitin domain 78.7 8.8 0.00019 28.2 6.3 55 26-87 17-74 (80)
253 PLN02799 Molybdopterin synthas 78.3 5 0.00011 30.1 4.9 66 16-87 2-76 (82)
254 PRK06083 sulfur carrier protei 78.2 12 0.00027 28.6 7.0 63 16-88 17-79 (84)
255 KOG4583 Membrane-associated ER 77.5 1.3 2.9E-05 42.2 1.7 63 13-78 7-74 (391)
256 PLN02382 probable sucrose-phos 77.0 5.3 0.00012 39.7 5.9 64 146-214 8-72 (413)
257 cd06408 PB1_NoxR The PB1 domai 76.1 8.6 0.00019 29.6 5.5 37 15-51 2-38 (86)
258 PLN02205 alpha,alpha-trehalose 76.0 4.9 0.00011 43.8 5.7 55 146-204 595-651 (854)
259 cd06411 PB1_p51 The PB1 domain 75.8 9.7 0.00021 28.8 5.6 35 26-60 8-42 (78)
260 KOG4250 TANK binding protein k 75.3 7.4 0.00016 40.9 6.5 44 16-59 316-359 (732)
261 PLN03063 alpha,alpha-trehalose 74.8 5.1 0.00011 43.3 5.5 60 146-205 506-568 (797)
262 PF12710 HAD: haloacid dehalog 73.8 3.5 7.6E-05 35.3 3.3 37 174-210 92-129 (192)
263 PLN03064 alpha,alpha-trehalose 73.3 6.3 0.00014 43.2 5.7 60 146-205 590-658 (934)
264 TIGR01525 ATPase-IB_hvy heavy 72.8 8 0.00017 39.9 6.2 108 144-278 361-470 (556)
265 PRK05659 sulfur carrier protei 72.2 18 0.00039 25.7 6.3 60 19-88 2-61 (66)
266 TIGR02244 HAD-IG-Ncltidse HAD 71.8 5.8 0.00013 38.5 4.5 40 168-207 181-221 (343)
267 PF02358 Trehalose_PPase: Treh 71.4 4.5 9.7E-05 36.6 3.6 50 151-202 1-52 (235)
268 TIGR01683 thiS thiamine biosyn 71.3 15 0.00033 26.1 5.7 56 22-87 3-58 (64)
269 TIGR01682 moaD molybdopterin c 71.0 17 0.00037 27.0 6.1 55 27-87 18-74 (80)
270 COG1778 Low specificity phosph 70.9 7.7 0.00017 33.4 4.5 64 145-210 6-75 (170)
271 PRK07440 hypothetical protein; 69.6 24 0.00052 25.8 6.5 61 18-88 5-65 (70)
272 PRK05863 sulfur carrier protei 69.0 20 0.00044 25.7 5.9 59 19-88 2-60 (65)
273 cd00565 ThiS ThiaminS ubiquiti 68.5 16 0.00036 26.0 5.3 59 20-88 2-60 (65)
274 COG3700 AphA Acid phosphatase 68.1 4.4 9.5E-05 35.7 2.5 103 148-267 64-172 (237)
275 COG2104 ThiS Sulfur transfer p 66.9 27 0.00058 25.6 6.2 60 18-87 3-62 (68)
276 PLN02177 glycerol-3-phosphate 66.6 7.7 0.00017 39.6 4.4 24 187-210 123-147 (497)
277 cd01775 CYR1_RA Ubiquitin doma 66.6 15 0.00033 28.8 5.1 71 18-89 5-87 (97)
278 PF00702 Hydrolase: haloacid d 66.5 7.7 0.00017 33.6 3.9 60 146-209 106-166 (215)
279 PF02597 ThiS: ThiS family; I 66.1 10 0.00022 27.6 4.0 60 26-88 13-72 (77)
280 cd06409 PB1_MUG70 The MUG70 pr 65.6 19 0.00041 27.7 5.4 36 18-53 3-39 (86)
281 PRK07696 sulfur carrier protei 64.1 30 0.00064 25.0 6.0 60 19-88 2-62 (67)
282 PF14451 Ub-Mut7C: Mut7-C ubiq 63.3 17 0.00037 27.6 4.7 54 23-87 21-74 (81)
283 cd06404 PB1_aPKC PB1 domain is 63.1 23 0.00051 27.0 5.3 38 16-53 1-38 (83)
284 PF02017 CIDE-N: CIDE-N domain 61.7 35 0.00075 25.8 6.0 53 35-90 21-73 (78)
285 PRK08053 sulfur carrier protei 61.0 45 0.00098 23.8 6.5 60 19-88 2-61 (66)
286 COG0089 RplW Ribosomal protein 60.2 19 0.00041 28.2 4.6 38 24-61 21-58 (94)
287 TIGR01512 ATPase-IB2_Cd heavy 59.8 20 0.00044 36.7 6.1 87 170-279 361-449 (536)
288 TIGR01687 moaD_arch MoaD famil 58.3 66 0.0014 24.1 7.4 57 25-87 16-82 (88)
289 PRK01777 hypothetical protein; 55.9 82 0.0018 24.6 7.5 63 15-88 3-75 (95)
290 PRK06944 sulfur carrier protei 55.7 69 0.0015 22.5 6.7 58 19-87 2-59 (65)
291 PF14453 ThiS-like: ThiS-like 55.2 73 0.0016 22.6 6.7 52 20-87 3-54 (57)
292 cd01615 CIDE_N CIDE_N domain, 53.3 43 0.00093 25.3 5.3 54 35-91 21-74 (78)
293 PF12710 HAD: haloacid dehalog 52.1 6.5 0.00014 33.6 0.9 13 150-162 1-13 (192)
294 PF10209 DUF2340: Uncharacteri 51.8 63 0.0014 26.6 6.4 27 27-53 17-49 (122)
295 KOG4842 Protein involved in si 51.0 3.3 7.2E-05 38.2 -1.2 44 16-59 4-47 (278)
296 PTZ00380 microtubule-associate 49.7 48 0.001 27.2 5.5 59 15-76 27-89 (121)
297 KOG2689 Predicted ubiquitin re 49.2 79 0.0017 29.6 7.4 72 14-86 209-284 (290)
298 PF00702 Hydrolase: haloacid d 47.9 10 0.00022 32.9 1.4 16 148-163 2-17 (215)
299 PRK09908 xanthine dehydrogenas 47.8 32 0.00069 29.6 4.4 38 13-51 4-41 (159)
300 cd06537 CIDE_N_B CIDE_N domain 46.5 29 0.00064 26.4 3.5 16 147-162 39-54 (81)
301 PF10790 DUF2604: Protein of U 46.5 75 0.0016 23.1 5.4 66 22-89 3-71 (76)
302 smart00295 B41 Band 4.1 homolo 46.3 54 0.0012 28.3 5.9 37 15-51 3-40 (207)
303 PF02991 Atg8: Autophagy prote 45.8 28 0.0006 27.8 3.5 61 14-76 15-82 (104)
304 cd06539 CIDE_N_A CIDE_N domain 45.5 31 0.00068 26.0 3.5 16 147-162 40-55 (78)
305 cd06410 PB1_UP2 Uncharacterize 45.4 60 0.0013 25.5 5.3 39 20-59 17-56 (97)
306 cd06539 CIDE_N_A CIDE_N domain 45.2 71 0.0015 24.1 5.4 53 35-90 21-73 (78)
307 PRK08640 sdhB succinate dehydr 43.9 49 0.0011 30.5 5.4 37 11-47 1-45 (249)
308 TIGR03636 L23_arch archaeal ri 43.7 60 0.0013 24.4 4.8 35 25-59 15-49 (77)
309 KOG0007 Splicing factor 3a, su 42.6 10 0.00023 36.6 0.7 49 21-72 289-338 (341)
310 KOG3189 Phosphomannomutase [Li 42.5 32 0.00069 31.0 3.6 40 147-193 11-50 (252)
311 PF09379 FERM_N: FERM N-termin 42.5 46 0.001 24.3 4.1 29 23-51 5-33 (80)
312 CHL00030 rpl23 ribosomal prote 42.3 57 0.0012 25.5 4.7 38 24-61 19-56 (93)
313 cd01615 CIDE_N CIDE_N domain, 41.8 22 0.00049 26.8 2.2 17 146-162 39-55 (78)
314 KOG2561 Adaptor protein NUB1, 41.5 9.8 0.00021 38.0 0.3 71 15-88 37-110 (568)
315 PRK10671 copA copper exporting 41.3 64 0.0014 35.1 6.5 106 146-278 629-735 (834)
316 PRK11433 aldehyde oxidoreducta 41.3 59 0.0013 29.5 5.3 37 15-51 49-85 (217)
317 PF00276 Ribosomal_L23: Riboso 41.2 44 0.00094 25.8 3.9 36 25-60 21-56 (91)
318 PRK14548 50S ribosomal protein 41.1 67 0.0015 24.6 4.8 35 25-59 22-56 (84)
319 KOG2086 Protein tyrosine phosp 40.8 95 0.0021 30.5 6.9 65 16-81 306-373 (380)
320 PRK11840 bifunctional sulfur c 40.6 79 0.0017 30.5 6.3 60 19-88 2-61 (326)
321 cd06538 CIDE_N_FSP27 CIDE_N do 40.5 40 0.00087 25.5 3.4 16 147-162 39-54 (79)
322 cd01760 RBD Ubiquitin-like dom 40.3 68 0.0015 23.7 4.6 37 23-59 8-44 (72)
323 PF03658 Ub-RnfH: RnfH family 40.0 1.7E+02 0.0037 22.4 7.0 64 16-88 1-72 (84)
324 TIGR01691 enolase-ppase 2,3-di 39.9 9.1 0.0002 34.6 -0.2 35 148-182 2-36 (220)
325 smart00266 CAD Domains present 39.3 1.1E+02 0.0023 23.0 5.5 51 35-88 19-69 (74)
326 PRK05738 rplW 50S ribosomal pr 38.8 51 0.0011 25.6 4.0 37 24-60 20-56 (92)
327 KOG2961 Predicted hydrolase (H 38.8 48 0.001 28.6 4.0 48 146-196 42-89 (190)
328 cd01764 Urm1 Urm1-like ubuitin 38.8 1.2E+02 0.0027 23.4 6.2 59 25-87 17-88 (94)
329 PF02192 PI3K_p85B: PI3-kinase 37.3 43 0.00094 25.2 3.2 23 27-49 2-24 (78)
330 PRK08453 fliD flagellar cappin 36.9 62 0.0013 34.4 5.3 33 16-48 129-161 (673)
331 cd01611 GABARAP Ubiquitin doma 36.2 1.4E+02 0.003 24.1 6.2 61 14-76 23-90 (112)
332 PF14533 USP7_C2: Ubiquitin-sp 36.2 38 0.00082 30.4 3.3 29 25-53 133-161 (213)
333 cd06536 CIDE_N_ICAD CIDE_N dom 35.8 52 0.0011 25.0 3.4 17 146-162 41-57 (80)
334 PF04126 Cyclophil_like: Cyclo 35.1 41 0.00088 27.4 3.0 29 16-44 1-29 (120)
335 KOG3040 Predicted sugar phosph 34.4 1.2E+02 0.0025 27.7 5.9 54 146-207 6-60 (262)
336 PLN02499 glycerol-3-phosphate 34.4 30 0.00065 35.3 2.5 24 187-210 109-133 (498)
337 KOG4572 Predicted DNA-binding 34.0 57 0.0012 35.2 4.5 63 23-87 3-68 (1424)
338 KOG4598 Putative ubiquitin-spe 33.7 53 0.0011 34.9 4.1 58 27-87 879-940 (1203)
339 COG5100 NPL4 Nuclear pore prot 33.4 1E+02 0.0022 30.6 5.7 70 18-88 3-78 (571)
340 PRK11033 zntA zinc/cadmium/mer 31.2 1.1E+02 0.0025 32.7 6.4 41 170-210 567-608 (741)
341 PRK11130 moaD molybdopterin sy 31.0 1.9E+02 0.0042 21.4 6.0 53 29-87 19-75 (81)
342 PF12436 USP7_ICP0_bdg: ICP0-b 30.7 1.6E+02 0.0034 27.1 6.5 73 13-86 66-149 (249)
343 cd06538 CIDE_N_FSP27 CIDE_N do 30.4 1.6E+02 0.0034 22.4 5.2 53 35-91 21-73 (79)
344 cd01612 APG12_C Ubiquitin-like 29.5 1.4E+02 0.0031 22.8 5.0 70 16-87 2-79 (87)
345 cd06405 PB1_Mekk2_3 The PB1 do 29.3 1.4E+02 0.003 22.5 4.6 37 17-53 2-38 (79)
346 KOG3128 Uncharacterized conser 29.2 45 0.00098 31.1 2.5 48 169-217 136-184 (298)
347 PF14533 USP7_C2: Ubiquitin-sp 29.2 50 0.0011 29.6 2.8 61 16-76 19-90 (213)
348 cd06536 CIDE_N_ICAD CIDE_N dom 28.8 1.3E+02 0.0027 22.9 4.5 52 35-89 21-74 (80)
349 PF00794 PI3K_rbd: PI3-kinase 28.7 2E+02 0.0044 22.4 6.0 35 13-47 14-50 (106)
350 smart00143 PI3K_p85B PI3-kinas 27.9 72 0.0016 24.1 3.0 23 27-49 2-24 (78)
351 COG4229 Predicted enolase-phos 27.7 42 0.0009 29.8 1.9 112 153-277 85-199 (229)
352 KOG3439 Protein conjugation fa 27.6 2.8E+02 0.0061 22.4 6.4 48 14-61 29-81 (116)
353 COG4087 Soluble P-type ATPase 26.8 66 0.0014 27.1 2.8 58 32-96 51-108 (152)
354 COG5083 SMP2 Uncharacterized p 26.4 58 0.0013 32.7 2.9 50 146-195 374-428 (580)
355 smart00144 PI3K_rbd PI3-kinase 26.3 2.3E+02 0.005 22.4 5.9 34 14-47 16-51 (108)
356 cd02955 SSP411 TRX domain, SSP 25.8 1E+02 0.0022 25.1 3.9 40 147-186 82-121 (124)
357 cd06537 CIDE_N_B CIDE_N domain 25.7 1.7E+02 0.0036 22.3 4.6 52 35-90 21-72 (81)
358 PF08783 DWNN: DWNN domain; I 25.5 1.4E+02 0.003 22.3 4.2 27 24-50 9-36 (74)
359 PF08337 Plexin_cytopl: Plexin 25.2 1.2E+02 0.0026 31.4 5.0 76 14-90 188-290 (539)
360 COG4555 NatA ABC-type Na+ tran 25.0 73 0.0016 29.0 3.0 55 146-209 151-205 (245)
361 COG4850 Uncharacterized conser 24.4 3E+02 0.0066 26.7 7.1 130 146-283 160-315 (373)
362 PF05761 5_nucleotid: 5' nucle 23.9 92 0.002 31.4 3.9 53 155-207 167-220 (448)
363 PF05678 VQ: VQ motif; InterP 23.7 80 0.0017 19.5 2.1 18 36-53 11-28 (31)
364 PRK12280 rplW 50S ribosomal pr 23.2 1.7E+02 0.0036 25.2 4.8 36 25-60 23-58 (158)
365 PF11620 GABP-alpha: GA-bindin 22.9 2.4E+02 0.0052 21.8 5.0 58 27-87 5-62 (88)
366 PRK13552 frdB fumarate reducta 21.9 1.8E+02 0.0039 26.6 5.1 34 14-47 3-46 (239)
367 PF12436 USP7_ICP0_bdg: ICP0-b 21.8 1.2E+02 0.0025 27.9 3.9 44 16-59 177-224 (249)
368 smart00455 RBD Raf-like Ras-bi 21.0 2.7E+02 0.0058 20.3 4.9 37 23-59 8-44 (70)
No 1
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=100.00 E-value=3.1e-52 Score=368.29 Aligned_cols=195 Identities=76% Similarity=1.219 Sum_probs=183.2
Q ss_pred HHHhhhhhhcccccCCCcCCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHH
Q 042485 127 KLRRRLSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEE 206 (332)
Q Consensus 127 k~~~~v~~~~~~~l~~~~~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~ 206 (332)
|++++++++.++.+++|++|||+|||||||||+|+.+..+++++++||||++||++|+++|||+||||+++.||+.+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~~ 80 (195)
T TIGR02245 1 KLLRRIEQYKIKLLNPPREGKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMTE 80 (195)
T ss_pred ChhHHHHhcCccccCCCCCCCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHHH
Confidence 57889999999999999999999999999999999777778899999999999999999999999999999999999999
Q ss_pred hCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeeccccCCcC
Q 042485 207 LGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHA 286 (332)
Q Consensus 207 l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~~~~ 286 (332)
+++..++.+++.+++|+.+|+++.+...|..++|||+.+|++++..|+++|||||||+|++|.+||+|||+|+||++++.
T Consensus 81 l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I~~f~~~~~ 160 (195)
T TIGR02245 81 LGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKIRPFKKAHA 160 (195)
T ss_pred hcccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCccccCCccccCC
Confidence 99998999999999998878888777888777999999999887546999999999999999999999999999998877
Q ss_pred CCCCchHHHHHHHHHHhccCCCCchhHhHhhHHHh
Q 042485 287 NRDSDQELVKLTQYLLAIADLDDLSNLDHGRWEFY 321 (332)
Q Consensus 287 ~~~~D~~L~~L~~~L~~l~~~~Dvr~~~~~~w~~~ 321 (332)
++..|+||..|++||+.||.++|||+++|++|++|
T Consensus 161 ~~~~D~eL~~L~~yL~~la~~~Dvr~~~~~~w~~~ 195 (195)
T TIGR02245 161 NRGTDQELLKLTQYLKTIAELEDFSSLDHKEWERY 195 (195)
T ss_pred CCcccHHHHHHHHHHHHHhcCcccchhhhcccccC
Confidence 77899999999999999999999999999999987
No 2
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=4.5e-34 Score=261.60 Aligned_cols=160 Identities=26% Similarity=0.423 Sum_probs=134.8
Q ss_pred cCCCcCCcceEEEecCCceEeccC--CC----------------CCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHH
Q 042485 140 RNPSREGKKLLVLDIDYTLFDHRS--TA----------------ENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVE 201 (332)
Q Consensus 140 l~~~~~~kk~LVLDLD~TLi~~~~--~~----------------~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~ 201 (332)
...+..+||+|||||||||+|+.. .+ ...++.+|||+++||+.+.+.||+++|||+...||.
T Consensus 82 ~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~Ya~ 161 (262)
T KOG1605|consen 82 LRLATVGRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASLEVYAD 161 (262)
T ss_pred cccccCCCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 344467999999999999999983 21 135788999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCce-EEEEe-cCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 202 LKMEELGVLTNPNYK-ITALL-DHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 202 ~~l~~l~~~~~~~~~-~~~~~-d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
++++.| |+..+ +...+ +.+|.+ ..| .++|||..+ +| ++++||||||+|.+|.+||+|||+|+
T Consensus 162 ~v~D~L----D~~~~i~~~RlyR~~C~~-----~~g-~yvKdls~~-----~~-dL~~viIiDNsP~sy~~~p~NgIpI~ 225 (262)
T KOG1605|consen 162 PLLDIL----DPDRKIISHRLYRDSCTL-----KDG-NYVKDLSVL-----GR-DLSKVIIVDNSPQSYRLQPENGIPIK 225 (262)
T ss_pred HHHHHc----cCCCCeeeeeecccceEe-----ECC-cEEEEccee-----cc-CcccEEEEcCChHHhccCccCCCccc
Confidence 999876 33222 23333 334432 245 689999888 75 99999999999999999999999999
Q ss_pred cccCCcCCCCCchHHHHHHHHHHhccCCCCchhHhHhhHH
Q 042485 280 PFRKAHANRDSDQELVKLTQYLLAIADLDDLSNLDHGRWE 319 (332)
Q Consensus 280 ~f~~~~~~~~~D~~L~~L~~~L~~l~~~~Dvr~~~~~~w~ 319 (332)
+|+. +..|+||+.|++||+.|+..+|||.++++.|.
T Consensus 226 sw~~----d~~D~eLL~LlpfLe~L~~~~Dvr~~l~~~~~ 261 (262)
T KOG1605|consen 226 SWFD----DPTDTELLKLLPFLEALAFVDDVRPILARRFG 261 (262)
T ss_pred cccc----CCChHHHHHHHHHHHHhcccccHHHHHHHhhc
Confidence 9998 46899999999999999988999999999885
No 3
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.97 E-value=3.8e-31 Score=228.80 Aligned_cols=145 Identities=26% Similarity=0.358 Sum_probs=121.2
Q ss_pred cceEEEecCCceEeccCCCC-----------------CCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAE-----------------NPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~-----------------~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
|++||||||+||||+..... .+++++|||+.|||++|+++|+|+|||++++.||+.+++.++.
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp 80 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDR 80 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCc
Confidence 68999999999999976431 2467899999999999999999999999999999999998754
Q ss_pred CCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeeccccCCcCCCC
Q 042485 210 LTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRD 289 (332)
Q Consensus 210 ~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~ 289 (332)
. ...+.+++.+..+.. ..| .++|+|+.+ + +++++||+|||++..|..||+|||+|.+|.| +.
T Consensus 81 ~---~~~f~~~l~r~~~~~----~~~-~~~K~L~~l-----~-~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~----~~ 142 (162)
T TIGR02251 81 G---GKVISRRLYRESCVF----TNG-KYVKDLSLV-----G-KDLSKVIIIDNSPYSYSLQPDNAIPIKSWFG----DP 142 (162)
T ss_pred C---CCEEeEEEEccccEE----eCC-CEEeEchhc-----C-CChhhEEEEeCChhhhccCccCEeecCCCCC----CC
Confidence 2 224445553332211 133 378999999 5 3999999999999999999999999999998 56
Q ss_pred CchHHHHHHHHHHhccCCCC
Q 042485 290 SDQELVKLTQYLLAIADLDD 309 (332)
Q Consensus 290 ~D~~L~~L~~~L~~l~~~~D 309 (332)
+|++|..|++||+.|+.++|
T Consensus 143 ~D~~L~~l~~~L~~l~~~~~ 162 (162)
T TIGR02251 143 NDTELLNLIPFLEGLRFEDD 162 (162)
T ss_pred CHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999876
No 4
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.97 E-value=1.4e-30 Score=223.91 Aligned_cols=146 Identities=29% Similarity=0.463 Sum_probs=108.2
Q ss_pred ceEEEecCCceEeccCCCC------------CCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCc
Q 042485 148 KLLVLDIDYTLFDHRSTAE------------NPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNY 215 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~------------~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~ 215 (332)
|+|||||||||+|+..... .++++.|||+++||++++++|+++|||++++.||+.+++.|... ..
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~---~~ 77 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPN---GK 77 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTT---TS
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhh---cc
Confidence 6899999999999987532 35688999999999999999999999999999999999987431 33
Q ss_pred eEEEEecCC-ceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeeccccCCcCCCCCchHH
Q 042485 216 KITALLDHL-AMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQEL 294 (332)
Q Consensus 216 ~~~~~~d~~-~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~~D~~L 294 (332)
.+..+|.+. |.. ..| .+.|||+.+ +| ++++||+|||++.+|..+|+|+|.|++|.+.. .+|++|
T Consensus 78 ~~~~~~~r~~~~~-----~~~-~~~KdL~~l-----~~-~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~---~~D~~L 142 (159)
T PF03031_consen 78 LFSRRLYRDDCTF-----DKG-SYIKDLSKL-----GR-DLDNVVIVDDSPRKWALQPDNGIPVPPFFGDT---PNDREL 142 (159)
T ss_dssp SEEEEEEGGGSEE-----ETT-EEE--GGGS-----SS--GGGEEEEES-GGGGTTSGGGEEE----SSCH---TT--HH
T ss_pred ccccccccccccc-----ccc-ccccchHHH-----hh-ccccEEEEeCCHHHeeccCCceEEeccccCCC---cchhHH
Confidence 445555433 321 233 347999999 63 99999999999999999999999999999832 689999
Q ss_pred HHHHHHHHhccCCCCch
Q 042485 295 VKLTQYLLAIADLDDLS 311 (332)
Q Consensus 295 ~~L~~~L~~l~~~~Dvr 311 (332)
..|++||+.|+.++|||
T Consensus 143 ~~l~~~L~~l~~~~Dvr 159 (159)
T PF03031_consen 143 LRLLPFLEELAKEDDVR 159 (159)
T ss_dssp HHHHHHHHHHHTHS-CH
T ss_pred HHHHHHHHHhCcccCCC
Confidence 99999999999999998
No 5
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.91 E-value=6.6e-24 Score=198.47 Aligned_cols=161 Identities=22% Similarity=0.263 Sum_probs=135.9
Q ss_pred cCCCcCCcceEEEecCCceEeccCCCC-CCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEE
Q 042485 140 RNPSREGKKLLVLDIDYTLFDHRSTAE-NPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKIT 218 (332)
Q Consensus 140 l~~~~~~kk~LVLDLD~TLi~~~~~~~-~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~ 218 (332)
.+|....+.+|||+|.++|||..+... ++.+.+|||++-||..|+++|||||||+....|+.++++.+ ||...|.
T Consensus 182 ~pPy~Qp~yTLVleledvLVhpdws~~tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~gmt~~pl~d~l----DP~g~Is 257 (393)
T KOG2832|consen 182 PPPYEQPPYTLVLELEDVLVHPDWSYKTGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQGMTVFPLLDAL----DPKGYIS 257 (393)
T ss_pred CCcccCCCceEEEEeeeeEeccchhhhcCceeccCchHHHHHHhhcccceEEEEecCCccchhhhHhhc----CCcceEE
Confidence 445555778999999999999988654 45688999999999999999999999999999999999876 6777776
Q ss_pred EEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeeccccCCcCCCCCchHHHHHH
Q 042485 219 ALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKAHANRDSDQELVKLT 298 (332)
Q Consensus 219 ~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~~~~~~~~D~~L~~L~ 298 (332)
..+=+.++. ...| +++|||+.| +| |+.++|+||-.+..+.+||+|.|++++|.| +.+|+.|.+|+
T Consensus 258 YkLfr~~t~----y~~G-~HvKdls~L-----NR-dl~kVivVd~d~~~~~l~P~N~l~l~~W~G----n~dDt~L~dL~ 322 (393)
T KOG2832|consen 258 YKLFRGATK----YEEG-HHVKDLSKL-----NR-DLQKVIVVDFDANSYKLQPENMLPLEPWSG----NDDDTSLFDLL 322 (393)
T ss_pred EEEecCccc----ccCc-cchhhhhhh-----cc-ccceeEEEEccccccccCcccccccCcCCC----CcccchhhhHH
Confidence 544222221 2234 789999999 85 999999999999999999999999999999 46899999999
Q ss_pred HHHHhcc--CCCCchhHhHhhHHH
Q 042485 299 QYLLAIA--DLDDLSNLDHGRWEF 320 (332)
Q Consensus 299 ~~L~~l~--~~~Dvr~~~~~~w~~ 320 (332)
.||+.|| +++|||++++ .+..
T Consensus 323 ~FL~~ia~~~~eDvR~vL~-~y~~ 345 (393)
T KOG2832|consen 323 AFLEYIAQQQVEDVRPVLQ-SYSQ 345 (393)
T ss_pred HHHHHHHHccHHHHHHHHH-Hhcc
Confidence 9999998 6799999987 3443
No 6
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.90 E-value=7.2e-24 Score=182.12 Aligned_cols=123 Identities=24% Similarity=0.338 Sum_probs=98.0
Q ss_pred cCCcceEEEecCCceEeccCCCC----------------------------CCceecCCcHHHHHHHHHhCCcEEEEcCC
Q 042485 144 REGKKLLVLDIDYTLFDHRSTAE----------------------------NPLQLMRPYLHEFLTAAYAEYDIMIWSAT 195 (332)
Q Consensus 144 ~~~kk~LVLDLD~TLi~~~~~~~----------------------------~~~~~~RP~l~eFL~~l~~~yeivI~Tas 195 (332)
+.+|++||||||+|||||...+. ..++..|||+.+||+.+++.|+++|||++
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~ 82 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMG 82 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCC
Confidence 45899999999999999976421 12467899999999999999999999999
Q ss_pred cHHHHHHHHHHhCCCCCCCceEE--EEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCC
Q 042485 196 SMKWVELKMEELGVLTNPNYKIT--ALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQ 273 (332)
Q Consensus 196 ~~~ya~~~l~~l~~~~~~~~~~~--~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~ 273 (332)
.+.||+.+++.++.. ..+. .++.++. + +..++|||+.++. ++++++|||||++.+|..||+
T Consensus 83 ~~~yA~~vl~~ldp~----~~~F~~ri~~rd~------~--~~~~~KdL~~i~~-----~d~~~vvivDd~~~~~~~~~~ 145 (156)
T TIGR02250 83 TRAYAQAIAKLIDPD----GKYFGDRIISRDE------S--GSPHTKSLLRLFP-----ADESMVVIIDDREDVWPWHKR 145 (156)
T ss_pred cHHHHHHHHHHhCcC----CCeeccEEEEecc------C--CCCccccHHHHcC-----CCcccEEEEeCCHHHhhcCcc
Confidence 999999999988543 2211 1222211 1 1357899977754 499999999999999999999
Q ss_pred CeeeeccccC
Q 042485 274 NGLAIKPFRK 283 (332)
Q Consensus 274 Ngi~I~~f~~ 283 (332)
|||+|.||.+
T Consensus 146 N~i~i~~~~~ 155 (156)
T TIGR02250 146 NLIQIEPYNY 155 (156)
T ss_pred CEEEeCCccc
Confidence 9999999975
No 7
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.2e-24 Score=203.78 Aligned_cols=181 Identities=23% Similarity=0.200 Sum_probs=157.1
Q ss_pred eEEEEEEeCCeEEEEE-ecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCCc
Q 042485 15 ELTLTVKWSGKEYTVR-VCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVEDE 93 (332)
Q Consensus 15 ~i~i~vk~~g~~~~i~-v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~~ 93 (332)
..+|.|||+|++|+++ ++.++|+.+||++|+++|||||+|||++. +|+++.|+..+..++||+|.+||||||+++
T Consensus 3 ~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~v---KGg~a~dd~~~~al~iKpn~~lmMmGt~e~- 78 (473)
T KOG1872|consen 3 SDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMV---KGGLAKDDVDWGALQIKPNETLMMMGTAEA- 78 (473)
T ss_pred cceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEE---ecccccccccccccccCCCCEEEeeccccc-
Confidence 4679999999999987 99999999999999999999999999985 577888888999999999999999999999
Q ss_pred cccCCCCCCccccccccchh-hhhh-----hhhhhhhHHHHHhhhhhhcccccCCCcCCcceEEEecCCceEeccCCCCC
Q 042485 94 IIVDPVDSPEIIDDFELGQE-EAVD-----IKDKEVNKQKLRRRLSQYKIKLRNPSREGKKLLVLDIDYTLFDHRSTAEN 167 (332)
Q Consensus 94 ~~~~~~~~~~~~~d~~~~~~-~~~~-----i~~~~~n~~k~~~~v~~~~~~~l~~~~~~kk~LVLDLD~TLi~~~~~~~~ 167 (332)
++.+|...+.+++|+. ++ ++.+ --+.-+|...++++++.+......|++.+++.+++|-|+|+.++. +
T Consensus 79 ~~e~p~~~~~~~ed~~--e~~~~~~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~----~ 152 (473)
T KOG1872|consen 79 GLEPPSLPPTFIEDSA--EQFASAALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRR----R 152 (473)
T ss_pred cccCcccCCcchhhhh--HHHHHhhccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhh----h
Confidence 6777777888888865 22 1111 123458899999999999988888888999999999999999854 4
Q ss_pred CceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHh
Q 042485 168 PLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEEL 207 (332)
Q Consensus 168 ~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l 207 (332)
..+.+||++++|++. +-|..++|+++.+++....++.+
T Consensus 153 i~~~mR~~f~~~~~~--~~v~pi~llqtl~~~~Pqfa~~~ 190 (473)
T KOG1872|consen 153 ISIETRTCFRPLCEK--GAVAPINLLQTLSSQYPQFAEWV 190 (473)
T ss_pred HHHHHHHHHHhhhcc--CCcchHHHHHHHHHHhHHHHHHh
Confidence 678899999999999 89999999999999988877754
No 8
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.85 E-value=2.3e-21 Score=145.96 Aligned_cols=74 Identities=47% Similarity=0.708 Sum_probs=69.7
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
|+|+|||+|++|+|++++++||++||++|++.|||||++|||+|.+++|++++|+.+|++++|++|++||||||
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 57999999999999999999999999999999999999999997433688999999999999999999999997
No 9
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.85 E-value=9.7e-21 Score=161.32 Aligned_cols=125 Identities=26% Similarity=0.297 Sum_probs=97.8
Q ss_pred CcceEEEecCCceEeccCC--CC-----------------CCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRST--AE-----------------NPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEE 206 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~--~~-----------------~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~ 206 (332)
+|++|||||||||+|+... .+ ...+.+|||+.|||++|+++|+++|||++...|++.++++
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 4789999999999998531 11 2346789999999999999999999999999999999998
Q ss_pred hCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeeccccCC
Q 042485 207 LGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRKA 284 (332)
Q Consensus 207 l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~~ 284 (332)
+++.. +.+.+++.+..+. ..+ ..+.|.+..+ + .++++||+|||++..+.++|.|||.|+||.+.
T Consensus 81 l~~~~---~~f~~i~~~~d~~----~~K-P~~~k~l~~l-----~-~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~ 144 (148)
T smart00577 81 LDPKK---YFGYRRLFRDECV----FVK-GKYVKDLSLL-----G-RDLSNVIIIDDSPDSWPFHPENLIPIKPWFGD 144 (148)
T ss_pred hCcCC---CEeeeEEECcccc----ccC-CeEeecHHHc-----C-CChhcEEEEECCHHHhhcCccCEEEecCcCCC
Confidence 86631 2223444322111 111 2377888888 4 39999999999999999999999999999984
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.74 E-value=1.9e-18 Score=166.05 Aligned_cols=159 Identities=23% Similarity=0.302 Sum_probs=130.5
Q ss_pred cccCCCcCCcceEEEecCCceEeccCCC----------------CCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHH
Q 042485 138 KLRNPSREGKKLLVLDIDYTLFDHRSTA----------------ENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVE 201 (332)
Q Consensus 138 ~~l~~~~~~kk~LVLDLD~TLi~~~~~~----------------~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~ 201 (332)
+....+...+++|++|||+||+|+.... ..+++..||++.+|+..+++.|++++||++.+.|++
T Consensus 203 ~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~ 282 (390)
T COG5190 203 PPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYAD 282 (390)
T ss_pred chhhcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcc
Confidence 3344444689999999999999997632 135678999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCceE-EEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeecc
Q 042485 202 LKMEELGVLTNPNYKI-TALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKP 280 (332)
Q Consensus 202 ~~l~~l~~~~~~~~~~-~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~ 280 (332)
++++-|+-. ..+ .++|..+|.. ..|. ++|||..+ +| +...||+||++|+.+.++|+|+|+|++
T Consensus 283 ~v~d~l~~~----k~~~~~lfr~sc~~-----~~G~-~ikDis~i-----~r-~l~~viiId~~p~SY~~~p~~~i~i~~ 346 (390)
T COG5190 283 PVLDILDSD----KVFSHRLFRESCVS-----YLGV-YIKDISKI-----GR-SLDKVIIIDNSPASYEFHPENAIPIEK 346 (390)
T ss_pred hHHHhcccc----ceeehhhhccccee-----ccCc-hhhhHHhh-----cc-CCCceEEeeCChhhhhhCccceeccCc
Confidence 988765332 222 2334445543 3565 89999999 63 999999999999999999999999999
Q ss_pred ccCCcCCCCCchHHHHHHHHHHhccC--CCCchhHhHh
Q 042485 281 FRKAHANRDSDQELVKLTQYLLAIAD--LDDLSNLDHG 316 (332)
Q Consensus 281 f~~~~~~~~~D~~L~~L~~~L~~l~~--~~Dvr~~~~~ 316 (332)
|.. +..|.+|..|.++|+.|+. +.||+..+..
T Consensus 347 W~~----d~~d~el~~ll~~le~L~~~~~~d~~~~l~~ 380 (390)
T COG5190 347 WIS----DEHDDELLNLLPFLEDLPDRDLKDVSSILQS 380 (390)
T ss_pred ccc----cccchhhhhhcccccccccccchhhhhhhhh
Confidence 998 4699999999999999996 8999998763
No 11
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.68 E-value=1.4e-16 Score=118.52 Aligned_cols=70 Identities=24% Similarity=0.427 Sum_probs=67.5
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
|+|+|||+|+.+++++++++||.+||++|++.+|+|+++|+|++ +|+.+.|+.+|++||+++|++|+|||
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF---KGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee---CCcccCccCcHHHcCCCCCCEEEEec
Confidence 58999999999999999999999999999999999999999998 89999999999999999999999998
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.62 E-value=1.4e-15 Score=114.10 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=65.7
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
+|.|+|+ ..|+.+.+++++++||++||++|++..|+|+++|||++ +|++++|+.+|+++||++|++|+|-
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~---~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKK---WYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEe---CCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 5788999 57899999999999999999999999999999999998 8999999999999999999999984
No 13
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.61 E-value=1.3e-15 Score=114.55 Aligned_cols=72 Identities=31% Similarity=0.449 Sum_probs=67.4
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|+|+|| ..|+++.++|++++||++||++|++.+|||+++|+|+| +|+.++|+.+|++|||++|++|+|+..+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~---~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF---KGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 467888 67999999999999999999999999999999999998 9999999999999999999999999754
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.58 E-value=7.2e-15 Score=111.77 Aligned_cols=74 Identities=28% Similarity=0.389 Sum_probs=68.2
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCCc
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVEDE 93 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~~ 93 (332)
|+|+|| ..|+.++|++++++||++||++|++.+|+|+++|+|+| +|+.++|+ +|++|||++|++|+||-+.+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~---~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLH---RETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEE---CCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 678888 56889999999999999999999999999999999998 89999998 9999999999999999877653
No 15
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.57 E-value=9e-15 Score=110.61 Aligned_cols=72 Identities=28% Similarity=0.433 Sum_probs=67.2
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCC--CCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNV--LPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgv--p~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|.|+|+ ++|+.+.+++++++||++||++|++.+|+ |+++|+|+| +|+.++|+.+|++|||++|++|+++.+.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~---~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY---SGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE---CCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 467788 67899999999999999999999999999 999999998 8999999999999999999999999765
No 16
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.56 E-value=1.1e-14 Score=111.37 Aligned_cols=75 Identities=25% Similarity=0.284 Sum_probs=68.9
Q ss_pred ceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceE--eeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 14 EELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKL--LYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 14 ~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkL--l~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|.|+|+|| .+|+++.+++++++||++||++|++.+|+|+++|+| ++ +|+.++|+.+|++|||++|++|+|+.+.
T Consensus 1 ~~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~---~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 1 MGWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD---SREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred CceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc---CCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 45889999 679999999999999999999999999999999999 76 8999999999999999999999999765
Q ss_pred C
Q 042485 91 E 91 (332)
Q Consensus 91 ~ 91 (332)
-
T Consensus 78 ~ 78 (80)
T cd01792 78 C 78 (80)
T ss_pred c
Confidence 3
No 17
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.54 E-value=1.7e-14 Score=109.64 Aligned_cols=73 Identities=29% Similarity=0.365 Sum_probs=65.9
Q ss_pred EEEEEE-eCCeE-EEEE-ecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 16 LTLTVK-WSGKE-YTVR-VCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 16 i~i~vk-~~g~~-~~i~-v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
|.|+|| ..|++ ++++ ++++.||++||++|++.+|||+++|||+| +|+.++|+.+|++|||++|++|+||-.+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~---~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFY---RGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe---CCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 467888 56776 6895 89999999999999999999999999998 99999999999999999999999997654
No 18
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.53 E-value=1.6e-14 Score=107.53 Aligned_cols=67 Identities=24% Similarity=0.394 Sum_probs=63.0
Q ss_pred EEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 19 TVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 19 ~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+|+ .+|+++++++++++||++||++|++..|||+++|+|+| +|++++|+.+|++|+|++|++|+|+-
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~---~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF---SGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 466 46899999999999999999999999999999999998 99999999999999999999999974
No 19
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.53 E-value=2.2e-14 Score=107.91 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=65.0
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|+|.||- ++++++++++++||++||++|++.+|||+++|+|+| +|+.++|+.+|++|||+++++|+|+...
T Consensus 1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~---~Gk~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01793 1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL---AGVPLEDDATLGQCGVEELCTLEVAGRL 71 (74)
T ss_pred CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE---CCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 4577776 478999999999999999999999999999999998 9999999999999999999999998643
No 20
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.51 E-value=4.3e-14 Score=105.21 Aligned_cols=70 Identities=21% Similarity=0.365 Sum_probs=65.2
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
|+|+||+ .|+.++++++++.||++||++|++.+|+|+++|+|++ +|++++|+.+|++||+++|++|+|+-
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY---SGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 5788994 6889999999999999999999999999999999998 89999999999999999999999873
No 21
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.50 E-value=4.2e-14 Score=105.20 Aligned_cols=68 Identities=18% Similarity=0.330 Sum_probs=63.9
Q ss_pred EEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 18 LTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 18 i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
|.|| ..|+.+.+++++++||++||++|++.+|+|+++|+|+| +|++++|+.+|+++||++|++|+|+.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~---~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIF---AGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEE---CCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 4567 67999999999999999999999999999999999998 99999999999999999999999874
No 22
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.50 E-value=4.3e-14 Score=106.33 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=64.6
Q ss_pred EEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 18 LTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 18 i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
|+|| ..|+++++++++++||.+||++|++.+|+|+++|+|+| +|+.|+|+.+|++|||++|++|+|+..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~G~~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSF---EGRPMEDEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 4677 67999999999999999999999999999999999998 899999999999999999999998854
No 23
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.49 E-value=6.2e-14 Score=106.06 Aligned_cols=68 Identities=24% Similarity=0.233 Sum_probs=63.6
Q ss_pred EeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 21 KWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 21 k~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
|.+|+++++++++++||++||++|++.+|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+....
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d~~tL~~~~i~~g~~l~v~~~~~ 71 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQY---EGIFIKDSNSLAYYNLANGTIIHLQLKER 71 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEEcCCCCcHHHcCCCCCCEEEEEEecC
Confidence 447999999999999999999999999999999999998 89999999999999999999999997653
No 24
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.49 E-value=9.9e-14 Score=102.58 Aligned_cols=66 Identities=36% Similarity=0.548 Sum_probs=62.4
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 22 WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 22 ~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
..|+.|.+++++++||.+||++|++.+|+|++.|+|+| +|+.++|+.+|++|||++|++|+|+..+
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~---~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY---NGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE---TTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeee---eeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 36889999999999999999999999999999999998 8999999999999999999999998764
No 25
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.48 E-value=9e-14 Score=111.20 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=68.0
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
.|.|+|+ ..|+++.+++++++||++||++|++..|||+++|+|+| +|+.++|+.+|++|+|++|++|+|+..
T Consensus 27 ~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~---~Gk~L~D~~tL~dy~I~~~stL~l~~~ 99 (103)
T cd01802 27 TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIW---NNMELEDEYCLNDYNISEGCTLKLVLA 99 (103)
T ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE---CCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 5888999 57899999999999999999999999999999999998 999999999999999999999999854
No 26
>PTZ00044 ubiquitin; Provisional
Probab=99.48 E-value=9.5e-14 Score=104.77 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=67.0
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|.|.|| ..|+++++++++++||.+||++|++.+|+|++.|+|+| +|+.++|+.+|++|++++|++|+|+-..
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIY---SGKQMSDDLKLSDYKVVPGSTIHMVLQL 73 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEEccCCCcHHHcCCCCCCEEEEEEEc
Confidence 467888 68999999999999999999999999999999999998 8999999999999999999999998653
No 27
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.46 E-value=9.8e-14 Score=103.59 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=59.6
Q ss_pred EEE-e-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcc-cccccCCCCCCceEEE
Q 042485 19 TVK-W-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDT-VLLSQLPLKSSLKMTM 86 (332)
Q Consensus 19 ~vk-~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~-~~L~~~~i~~g~~l~l 86 (332)
+|| . +|+++.+++++++||++||++|++.+|||++.|+|+| +|+.++|+ .+|++|||++|++|+|
T Consensus 2 ~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~---~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 2 TVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY---NGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE---CCeEccCCcccHHHcCCCCCCEEEE
Confidence 455 3 6888999999999999999999999999999999998 99999887 6899999999999886
No 28
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.45 E-value=2.7e-13 Score=101.96 Aligned_cols=72 Identities=24% Similarity=0.432 Sum_probs=66.7
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|+|.|+ ..|+++.++++++.||++||++|++.+|+|+++|+|+| +|+.++|+.+|++|++++|++|+|+-..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~---~g~~L~d~~tl~~~~i~~g~~i~l~~~~ 73 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMNDDKTAADYKLEGGSVLHLVLAL 73 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEE---CCeEccCCCCHHHcCCCCCCEEEEEEEc
Confidence 468888 57899999999999999999999999999999999998 8999999999999999999999998653
No 29
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.44 E-value=3e-13 Score=101.69 Aligned_cols=72 Identities=22% Similarity=0.418 Sum_probs=66.5
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|.|+|+ ..|+.+.+++++++||++||++|++.+|+|+++|+|++ +|+.++|+.+|++||+++|++|+|+...
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~---~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE---CCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 468888 56889999999999999999999999999999999997 8999999999999999999999998654
No 30
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.43 E-value=2.9e-13 Score=100.97 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=62.8
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
++|+|| ..|+ ..++++++.||++||++|++.+|+|+++|+|+| +|+.++|+.+|++||+++|++|+|+.
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~---~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF---AGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE---CCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 467888 4564 689999999999999999999999999999998 89999999999999999999999874
No 31
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.40 E-value=5.5e-13 Score=101.01 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=61.7
Q ss_pred eEEEEEEe-CCeEEE--EEecCCCCHHHHHHHHHHHhC--CCCCCceEeeccCCCcccCcccccccCC--CCCCceEEEE
Q 042485 15 ELTLTVKW-SGKEYT--VRVCGDDSVAELKRRICELTN--VLPKRQKLLYPKIGNKLADDTVLLSQLP--LKSSLKMTMI 87 (332)
Q Consensus 15 ~i~i~vk~-~g~~~~--i~v~~~~tV~~LK~~I~~~tg--vp~~~QkLl~~k~~gk~l~d~~~L~~~~--i~~g~~l~l~ 87 (332)
.|+|+||. ++++++ |+++++.||++||++|++..+ .|+++||||| +||+|+|+.+|++++ +.+|.+|+|+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy---~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY---SGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEE---cCeeccchhhHHHHhhcccCCceEEEE
Confidence 37899994 677744 556899999999999999875 5589999999 999999999999996 9999999998
Q ss_pred e
Q 042485 88 G 88 (332)
Q Consensus 88 g 88 (332)
-
T Consensus 78 ~ 78 (79)
T cd01790 78 C 78 (79)
T ss_pred e
Confidence 4
No 32
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.40 E-value=5.5e-13 Score=135.17 Aligned_cols=121 Identities=22% Similarity=0.346 Sum_probs=96.4
Q ss_pred ceEEEecCCceEeccCCC-------------C------------------CCceecCCcHHHHHHHHHhCCcEEEEcCCc
Q 042485 148 KLLVLDIDYTLFDHRSTA-------------E------------------NPLQLMRPYLHEFLTAAYAEYDIMIWSATS 196 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~-------------~------------------~~~~~~RP~l~eFL~~l~~~yeivI~Tas~ 196 (332)
..||+|||.||+|+.... . .+++++||++++||+++++.|++.|||.+.
T Consensus 147 L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~ 226 (635)
T KOG0323|consen 147 LHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGT 226 (635)
T ss_pred ceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccc
Confidence 589999999999986521 1 257899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCee
Q 042485 197 MKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGL 276 (332)
Q Consensus 197 ~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi 276 (332)
..||..+.+-| ||..++.. .++++..+ .+....+||..++. . +.+++|||||++..|-.++.|.|
T Consensus 227 R~YA~~i~~li----DP~~~lF~----dRIisrde--~~~~kt~dL~~~~p---~--g~smvvIIDDr~dVW~~~~~nLI 291 (635)
T KOG0323|consen 227 RDYALEIAKLI----DPEGKYFG----DRIISRDE--SPFFKTLDLVLLFP---C--GDSMVVIIDDRSDVWPDHKRNLI 291 (635)
T ss_pred hHHHHHHHHHh----CCCCcccc----ceEEEecC--CCcccccccccCCC---C--CCccEEEEeCccccccCCCcceE
Confidence 99999988644 66655332 22444332 44456688888844 3 78899999999999999999999
Q ss_pred eeccccC
Q 042485 277 AIKPFRK 283 (332)
Q Consensus 277 ~I~~f~~ 283 (332)
.|.+|.+
T Consensus 292 ~i~~y~y 298 (635)
T KOG0323|consen 292 QIAPYPY 298 (635)
T ss_pred Eeeeeec
Confidence 9999964
No 33
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.35 E-value=1.9e-12 Score=93.67 Aligned_cols=64 Identities=33% Similarity=0.466 Sum_probs=59.3
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCc
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSL 82 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~ 82 (332)
|+|+|++.++.+.++++++.||++||++|+..+|+|+++|+|++ +|+.+.|+.+|+++|+++|+
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~---~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY---KGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEECCCCCCHHHcCCcCCC
Confidence 56889987778899999999999999999999999999999998 89999999999999999875
No 34
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=7.1e-12 Score=121.56 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=68.4
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhC---CCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTN---VLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tg---vp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
|+|+|| ..|+++.|+|++++||.+||++|++.+| +|+++|||+| +||+|+|+.+|++|||++|++|++|.++.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy---~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIY---SGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEE---CCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 578888 7899999999999999999999999999 9999999998 89999999999999999999999997664
No 35
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.23 E-value=1.1e-11 Score=92.81 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=49.9
Q ss_pred cCCCCHHHHHHHHHHHh--CCC-CCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 32 CGDDSVAELKRRICELT--NVL-PKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 32 ~~~~tV~~LK~~I~~~t--gvp-~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
++++||.+||++|++.+ |++ +++|||+| +||.|+|+.+|++|||++|++|+|+-
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy---~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIH---CGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEe---CCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 56899999999999997 475 99999999 99999999999999999999999974
No 36
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.22 E-value=3.6e-11 Score=88.12 Aligned_cols=66 Identities=33% Similarity=0.545 Sum_probs=61.4
Q ss_pred EEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 20 VKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 20 vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
|++ .|+.+.+++++++||++||++|+..+|+|+++|+|++ +|+.++|+.+|+++++++|+.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~---~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY---AGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 564 5888999999999999999999999999999999997 89999999999999999999999986
No 37
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.4e-11 Score=86.32 Aligned_cols=69 Identities=25% Similarity=0.445 Sum_probs=63.9
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
|.|.|| ..|+.+.|+++++++|..+|+.+++..||||.+|+|+| .||++.|+.+-..|++..|+.++++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~---~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---AGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhh---ccccccccccHHHhhhccceeEeeC
Confidence 347788 68999999999999999999999999999999999999 8999999999999999999998874
No 38
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.21 E-value=3.5e-11 Score=90.75 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=54.9
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc-CcccccccCCCC-CCceEEEE
Q 042485 23 SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA-DDTVLLSQLPLK-SSLKMTMI 87 (332)
Q Consensus 23 ~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l-~d~~~L~~~~i~-~g~~l~l~ 87 (332)
.|.++.++++++.||++||++|++.+||||++|+| + +|+.+ +|+.+|++||++ +|++++|-
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~---~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V---IGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E---cCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 46788999999999999999999999999999999 7 67776 577899999998 88999874
No 39
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.20 E-value=4.7e-11 Score=116.55 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=71.9
Q ss_pred CCceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 12 SSEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 12 ~~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
+.+.++|+||..+.++.+.|+.++||.+||+.|...+++++++|+||| .||+|+|+.+|..+||++|.||+||....
T Consensus 12 ~~~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIf---aGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 12 SASLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIY---AGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred ccceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeee---cCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 345799999988889999999999999999999999999999999999 89999999999999999999999997554
No 40
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.07 E-value=9.9e-10 Score=85.20 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=70.0
Q ss_pred CCCceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 11 SSSEELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 11 ~~~~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
.....|+|.|+ ..|+...++|..++|+..||+++++..|+|+++|+|+| .|+.+.++.|+.+|++.+|++|.++..
T Consensus 7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f---~G~~L~~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF---DGQRIRDNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE---CCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 34567899999 45888999999999999999999999999999999999 999999999999999999999998754
Q ss_pred C
Q 042485 90 V 90 (332)
Q Consensus 90 ~ 90 (332)
.
T Consensus 84 l 84 (87)
T cd01763 84 Q 84 (87)
T ss_pred c
Confidence 3
No 41
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.05 E-value=2.8e-10 Score=88.48 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=54.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc-CcccccccCCCCCCceEEEEe
Q 042485 26 EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA-DDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 26 ~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l-~d~~~L~~~~i~~g~~l~l~g 88 (332)
...++|++++||++||.+|.+..||||+.|||++ .|+.| +|..+|++|||.+|+.|+|..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~---dG~~L~DDsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSI---DGKILSDDCATLGTLGVIPESVILLKA 76 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeee---cCceeccCCccHHhcCCCCCCEEEEEe
Confidence 4678899999999999999999999999999998 78766 567899999999999999984
No 42
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.03 E-value=3.4e-10 Score=105.49 Aligned_cols=74 Identities=24% Similarity=0.401 Sum_probs=70.1
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhC--CCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTN--VLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tg--vp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
|+|+|| ..+..|+|++.++.||.++|.+|+.++| .|+++||||| .||.|.|+.++.+|+++++..|.+|+|...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy---~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIY---SGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeee---cceeccCCcchhhhccccCceEEEEEecCc
Confidence 578999 7889999999999999999999999999 9999999999 999999999999999999999999998773
No 43
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.01 E-value=3e-10 Score=99.33 Aligned_cols=130 Identities=16% Similarity=0.183 Sum_probs=92.5
Q ss_pred cceEEEecCCceEeccCCC-------------------CCCceecCCcHHHHHHHHHh-CCcEEEEcCC-cHHHHHHHHH
Q 042485 147 KKLLVLDIDYTLFDHRSTA-------------------ENPLQLMRPYLHEFLTAAYA-EYDIMIWSAT-SMKWVELKME 205 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~-------------------~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas-~~~ya~~~l~ 205 (332)
.+++|||||+||+.+.... ....+..+||+.++|+.|++ ++.++|.|++ ...+++.+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~ 81 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILG 81 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH
Confidence 3689999999999876521 12346789999999999986 7999999998 9999999998
Q ss_pred HhCCC-CCCCceEEEEecCCceEEEeeCCCCCccccccccccccCC-----CcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 206 ELGVL-TNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFP-----EFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 206 ~l~~~-~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~-----~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
.+++. .-..+.+..+|+. .++... ...-|+...++.... + .++++|++|||++..+.....+|+.+.
T Consensus 82 ~~~l~~~~~~~~~~~~Fd~--iv~~~~----~~~~kp~~~i~~~~~~~~~~g-l~p~e~l~VgDs~~di~aA~~aGi~~i 154 (174)
T TIGR01685 82 TFEITYAGKTVPMHSLFDD--RIEIYK----PNKAKQLEMILQKVNKVDPSV-LKPAQILFFDDRTDNVREVWGYGVTSC 154 (174)
T ss_pred hCCcCCCCCcccHHHhcee--eeeccC----CchHHHHHHHHHHhhhcccCC-CCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence 88763 1111111122221 111111 123477766666532 3 589999999999999999999999887
Q ss_pred cccC
Q 042485 280 PFRK 283 (332)
Q Consensus 280 ~f~~ 283 (332)
-+..
T Consensus 155 ~v~~ 158 (174)
T TIGR01685 155 YCPS 158 (174)
T ss_pred EcCC
Confidence 7754
No 44
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.4e-10 Score=90.83 Aligned_cols=72 Identities=18% Similarity=0.369 Sum_probs=65.7
Q ss_pred EEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCC
Q 042485 18 LTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVED 92 (332)
Q Consensus 18 i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~ 92 (332)
|.+.+.|++..+++.+++||..+|++|+...|+||+.|+|+| .|++++|..||++||+...++|+++-..-+
T Consensus 4 ~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~---~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~G 75 (128)
T KOG0003|consen 4 FVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (128)
T ss_pred EEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHh---cccccccCCcccccCccchhhhhhhHHHhc
Confidence 555589999999999999999999999999999999999998 899999999999999999999998754433
No 45
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.96 E-value=4.5e-09 Score=80.98 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=57.8
Q ss_pred EEEEEEeCC--eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCc------ccCcccccccCCCCCCceEEEE
Q 042485 16 LTLTVKWSG--KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNK------LADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 16 i~i~vk~~g--~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk------~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
++|.|+... ...+..++++.||.+||++|+..||+||+.|+|.+. .|+ +.+|+.+|+.||+++|..|+++
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~--~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLF--DGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEE--cCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 456666553 334455999999999999999999999999999632 344 3478889999999999999988
Q ss_pred ec
Q 042485 88 GT 89 (332)
Q Consensus 88 gs 89 (332)
-+
T Consensus 80 D~ 81 (84)
T cd01789 80 DV 81 (84)
T ss_pred eC
Confidence 53
No 46
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6.2e-10 Score=93.29 Aligned_cols=70 Identities=23% Similarity=0.439 Sum_probs=64.4
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
|.|+|+ ..|+....++.+++||..+|++|+..+||||++|+|++ .|++|+|..+|++|+|+..++|+|+-
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlif---ag~qLedgrtlSDY~Iqkestl~l~l 71 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLSDYNIQKESTLHLVL 71 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhh---hhcccccCCccccccccccceEEEEE
Confidence 357888 45778889999999999999999999999999999998 89999999999999999999999884
No 47
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.86 E-value=1.3e-08 Score=78.92 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=59.7
Q ss_pred eEEEEEEeCCe---EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeec-cCCCc----ccCcccccccCCCCCCceEEE
Q 042485 15 ELTLTVKWSGK---EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYP-KIGNK----LADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 15 ~i~i~vk~~g~---~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~-k~~gk----~l~d~~~L~~~~i~~g~~l~l 86 (332)
+|+|.|.+... ..+..++.+.||++||++|+..||+||+.|+|.+. ..++. +.+|..+|+.||+++|..|++
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 46788887654 77889999999999999999999999999999864 11333 235788999999999999998
Q ss_pred Eec
Q 042485 87 IGT 89 (332)
Q Consensus 87 ~gs 89 (332)
.=+
T Consensus 81 ~D~ 83 (87)
T PF14560_consen 81 VDT 83 (87)
T ss_dssp EE-
T ss_pred EeC
Confidence 754
No 48
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.77 E-value=6.8e-09 Score=83.04 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=59.5
Q ss_pred ceEEEEEEe-CCe-EEEEEecCCCCHHHHHHHHHH-----HhCCC--CCCceEeeccCCCcccCcccccccCC------C
Q 042485 14 EELTLTVKW-SGK-EYTVRVCGDDSVAELKRRICE-----LTNVL--PKRQKLLYPKIGNKLADDTVLLSQLP------L 78 (332)
Q Consensus 14 ~~i~i~vk~-~g~-~~~i~v~~~~tV~~LK~~I~~-----~tgvp--~~~QkLl~~k~~gk~l~d~~~L~~~~------i 78 (332)
.++.|.+.. .|. .=+..+++++||++||++|++ .+|+| +++||||| +||+|+|+.+|++|+ +
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy---sGKiLeD~~TL~d~~~p~g~~~ 79 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS---AGKILENSKTVGECRSPVGDIA 79 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe---CCeecCCCCcHHHhCCcccccC
Confidence 467777774 453 335678899999999999994 45566 99999999 999999999999999 5
Q ss_pred CCCceEEEEecC
Q 042485 79 KSSLKMTMIGTV 90 (332)
Q Consensus 79 ~~g~~l~l~gs~ 90 (332)
....+++|+.-+
T Consensus 80 ~~~~TmHvvlr~ 91 (113)
T cd01814 80 GGVITMHVVVQP 91 (113)
T ss_pred CCceEEEEEecC
Confidence 556788888644
No 49
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.71 E-value=1.5e-08 Score=84.21 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=48.1
Q ss_pred ceEEEecCCceEeccCC--CCCCce---ecCCcHHHHHHHHHh-CCcEEEEcCC-cHHHHHHHHHHhC
Q 042485 148 KLLVLDIDYTLFDHRST--AENPLQ---LMRPYLHEFLTAAYA-EYDIMIWSAT-SMKWVELKMEELG 208 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~--~~~~~~---~~RP~l~eFL~~l~~-~yeivI~Tas-~~~ya~~~l~~l~ 208 (332)
|++|+||||||++.... .....+ ...||+.++|+.+++ ++.++|.|++ ...++..+++.++
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 58999999999987321 100000 368999999999987 7999999999 8999999888765
No 50
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.69 E-value=1.6e-08 Score=93.96 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=72.5
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.++|+.|++ +|.++|.|+++..++..+++.+|+.. +|+. +++..+.. ..||-+.+|..
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~--------~Fd~--ii~~~d~~----~~KP~Pe~~~~a 174 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG--------FFSV--VLAAEDVY----RGKPDPEMFMYA 174 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh--------hCcE--EEecccCC----CCCCCHHHHHHH
Confidence 368999999999997 69999999999999999999887641 1111 12211111 23776666654
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .+++++|+|+|+...+......|+.+..+.+
T Consensus 175 ~~~l~-~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g 210 (260)
T PLN03243 175 AERLG-FIPERCIVFGNSNSSVEAAHDGCMKCVAVAG 210 (260)
T ss_pred HHHhC-CChHHeEEEcCCHHHHHHHHHcCCEEEEEec
Confidence 124 4899999999999999999999988776654
No 51
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.66 E-value=5.7e-08 Score=88.21 Aligned_cols=92 Identities=20% Similarity=0.262 Sum_probs=68.2
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.++|+.|++ ++.++|.|++...++..+++.+|+.. +|+. +++..+. + ..||-+.+|.+
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~--------~fd~--iv~s~~~--~--~~KP~p~~~~~~ 158 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA--------HLDL--LLSTHTF--G--YPKEDQRLWQAV 158 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH--------HCCE--EEEeeeC--C--CCCCCHHHHHHH
Confidence 357999999999998 79999999999999999998877631 1211 1111111 2 23777666654
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeee
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLA 277 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~ 277 (332)
.-+ .+++++++|+|++..+.....+|+.
T Consensus 159 ~~~~~-~~p~~~l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 159 AEHTG-LKAERTLFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred HHHcC-CChHHEEEEcCCHHHHHHHHHcCCe
Confidence 124 4899999999999999888889986
No 52
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.65 E-value=1.3e-07 Score=78.35 Aligned_cols=111 Identities=26% Similarity=0.330 Sum_probs=78.6
Q ss_pred ceEEEecCCceEeccCCCCCC--ceecCCcHHHHHHHHHh-CCcEEEEcCCc--------HHHHHHHHHHhCCCCCCCce
Q 042485 148 KLLVLDIDYTLFDHRSTAENP--LQLMRPYLHEFLTAAYA-EYDIMIWSATS--------MKWVELKMEELGVLTNPNYK 216 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~--~~~~RP~l~eFL~~l~~-~yeivI~Tas~--------~~ya~~~l~~l~~~~~~~~~ 216 (332)
++++||+||||++. ...... .....|++.++|++|.+ .+.++|.|++. ..++..+++++++.
T Consensus 1 k~~~~D~dgtL~~~-~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~------ 73 (132)
T TIGR01662 1 KGVVLDLDGTLTDD-VPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP------ 73 (132)
T ss_pred CEEEEeCCCceecC-CCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC------
Confidence 57999999999964 211112 35678999999999987 69999999999 88899999888763
Q ss_pred EEEEecCCceEEEeeCCCCCcccccccccccc----CCCcCCCCcEEEEeC-CccccccCCCCeeee
Q 042485 217 ITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ----FPEFYSSKNTIMFDD-LRRNFVMNPQNGLAI 278 (332)
Q Consensus 217 ~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~----~~~~~~~~~~iivDD-~~~~~~~~p~Ngi~I 278 (332)
..+.+ . .. + ..||-+.+|.. +++ .+++++++|+| +...+.....+|+..
T Consensus 74 ~~~~~------~--~~--~--~~KP~~~~~~~~~~~~~~-~~~~~~v~IGD~~~~Di~~A~~~Gi~~ 127 (132)
T TIGR01662 74 IDVLY------A--CP--H--CRKPKPGMFLEALKRFNE-IDPEESVYVGDQDLTDLQAAKRAGLAF 127 (132)
T ss_pred EEEEE------E--CC--C--CCCCChHHHHHHHHHcCC-CChhheEEEcCCCcccHHHHHHCCCeE
Confidence 11111 0 01 1 23665555543 323 48999999999 687777777777654
No 53
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.64 E-value=9.8e-08 Score=70.97 Aligned_cols=69 Identities=23% Similarity=0.407 Sum_probs=61.9
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCC-CCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLP-KRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~-~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
|+|+|+. +|+.+.+.|.+++++..|++.+++..|+|+ +.++|+| .|+.++++.|++++|+++|+.|.++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f---dG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF---DGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE---TTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE---CCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 6788886 577889999999999999999999999999 9999998 8999999999999999999999875
No 54
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.59 E-value=2.3e-08 Score=90.76 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=77.2
Q ss_pred eecCCcHHHHHHHHHhC-CcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYAE-YDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~~-yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
+...||+.+||++|... ..+++-|++....++..|+.+|+... |+. +++-.+...+ ||-+.+|..
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~--------f~~--~v~~~dv~~~----KP~Pd~yL~ 150 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDY--------FDV--IVTADDVARG----KPAPDIYLL 150 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhh--------cch--hccHHHHhcC----CCCCHHHHH
Confidence 35899999999999985 99999999999999999998888622 111 1111122233 888888865
Q ss_pred ---CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 ---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-| .+|++||+|||++.........|+.+..+.+
T Consensus 151 Aa~~Lg-v~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 151 AAERLG-VDPEECVVVEDSPAGIQAAKAAGMRVVGVPA 187 (221)
T ss_pred HHHHcC-CChHHeEEEecchhHHHHHHHCCCEEEEecC
Confidence 224 5999999999999999998889999888876
No 55
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.58 E-value=1.2e-07 Score=80.33 Aligned_cols=119 Identities=18% Similarity=0.119 Sum_probs=80.0
Q ss_pred ceEEEecCCceEeccCCCC---CCceecCCcHHHHHHHHHh-CCcEEEEcCCcH---------------HHHHHHHHHhC
Q 042485 148 KLLVLDIDYTLFDHRSTAE---NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSM---------------KWVELKMEELG 208 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~---~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~---------------~ya~~~l~~l~ 208 (332)
++|+||+||||++...... .......||+.++|++|++ +|.++|.|+... .++..+++.++
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 5799999999999875221 1124578999999999987 799999999873 56677777776
Q ss_pred CCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC---CCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 209 VLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF---PEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 209 ~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
+. +. ..++.. ..........||-+.+|... -+ .+++++++|.|+..-+......|+..
T Consensus 81 l~----~~-~~~~~~------~~~~~~~~~~KP~~~~~~~~~~~~~-~~~~e~i~IGDs~~Di~~A~~~Gi~~ 141 (147)
T TIGR01656 81 VA----VD-GVLFCP------HHPADNCSCRKPKPGLILEALKRLG-VDASRSLVVGDRLRDLQAARNAGLAA 141 (147)
T ss_pred Cc----ee-EEEECC------CCCCCCCCCCCCCHHHHHHHHHHcC-CChHHEEEEcCCHHHHHHHHHCCCCE
Confidence 63 11 111110 00011111237777776651 14 48999999999988887777777654
No 56
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.57 E-value=5.7e-08 Score=87.07 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=68.3
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.++|+.|++ ++.++|.|++...++..+++.+|+.. .+.+++ +.... ...|+-+..+.+
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~----~f~~i~------~~~~~----~~~Kp~p~~~~~~ 147 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE----FFDVVI------TLDDV----EHAKPDPEPVLKA 147 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh----ceeEEE------ecCcC----CCCCCCcHHHHHH
Confidence 467999999999987 79999999999999999999887741 111221 11111 123554444433
Q ss_pred ---CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 ---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
+ + .+++++++|+|++.-+.+...+|+.....
T Consensus 148 ~~~~-~-~~~~~~~~iGDs~~Di~aa~~aG~~~i~v 181 (214)
T PRK13288 148 LELL-G-AKPEEALMVGDNHHDILAGKNAGTKTAGV 181 (214)
T ss_pred HHHc-C-CCHHHEEEECCCHHHHHHHHHCCCeEEEE
Confidence 3 3 47899999999999988888889875543
No 57
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.57 E-value=5.3e-08 Score=94.79 Aligned_cols=98 Identities=11% Similarity=0.163 Sum_probs=72.8
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.+||+.|++ ++.++|.|++...+++.+++.+|+.. .+..+ ++..+.. ..|+-+.+|..
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~----yFd~I------v~sddv~----~~KP~Peifl~A 281 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG----FFSVI------VAAEDVY----RGKPDPEMFIYA 281 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH----HceEE------EecCcCC----CCCCCHHHHHHH
Confidence 367999999999987 69999999999999999999888741 11122 1111111 23777666654
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .++++||+|+|++.........|+.+..+.+
T Consensus 282 ~~~lg-l~Peecl~IGDS~~DIeAAk~AGm~~IgV~~ 317 (381)
T PLN02575 282 AQLLN-FIPERCIVFGNSNQTVEAAHDARMKCVAVAS 317 (381)
T ss_pred HHHcC-CCcccEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 124 4899999999999999888889988777654
No 58
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.56 E-value=1e-07 Score=85.48 Aligned_cols=96 Identities=20% Similarity=0.172 Sum_probs=67.6
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
...||+.+||++|++ ++.++|.|++...++..+++.+|+.. +|+. +++..+ .| ..||-+.+|...
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~--------~f~~--i~~~~~--~~--~~KP~~~~~~~~ 159 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD--------FFDA--VITSEE--EG--VEKPHPKIFYAA 159 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH--------hccE--EEEecc--CC--CCCCCHHHHHHH
Confidence 468999999999998 59999999999999999999887641 1211 122111 12 237766665541
Q ss_pred ---CCcCCCCcEEEEeCCc-cccccCCCCeeeeccc
Q 042485 250 ---PEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPF 281 (332)
Q Consensus 250 ---~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f 281 (332)
-+ .+++++|+|+|++ ..+......|+...-+
T Consensus 160 ~~~~~-~~~~~~~~igDs~~~di~~A~~aG~~~i~~ 194 (221)
T TIGR02253 160 LKRLG-VKPEEAVMVGDRLDKDIKGAKNLGMKTVWI 194 (221)
T ss_pred HHHcC-CChhhEEEECCChHHHHHHHHHCCCEEEEE
Confidence 14 4889999999998 5677777777765444
No 59
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.56 E-value=4e-07 Score=72.71 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=60.2
Q ss_pred eEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCC-------CCCceEEEE
Q 042485 15 ELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPL-------KSSLKMTMI 87 (332)
Q Consensus 15 ~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i-------~~g~~l~l~ 87 (332)
.+=+.|+..+-+|-+++.+++||.+||+.|+..+.+||+.|+|+ | .+-+++|+.+|++||+ ..-+.|=|.
T Consensus 2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~--k-d~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa 78 (119)
T cd01788 2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY--K-DDQLLDDGKTLGDCGFTSQTARPQAPATVGLA 78 (119)
T ss_pred ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee--c-CceeecccccHHHcCccccccccCCCCeEEEE
Confidence 34567777777788899999999999999999999999999998 3 7778999999999999 445565555
Q ss_pred ec
Q 042485 88 GT 89 (332)
Q Consensus 88 gs 89 (332)
-.
T Consensus 79 ~r 80 (119)
T cd01788 79 FR 80 (119)
T ss_pred Ee
Confidence 44
No 60
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.55 E-value=5.5e-08 Score=89.61 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=70.7
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.++|++|++ ++.++|.|++...+++.+|+++++.. +|+. +++..+.. ..||-+.++.+
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~--------~Fd~--iv~~~~~~----~~KP~p~~~~~a 173 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD--------FFQA--VIIGSECE----HAKPHPDPYLKA 173 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh--------hCcE--EEecCcCC----CCCCChHHHHHH
Confidence 357899999999976 79999999999999999999887741 1211 11111111 23776666554
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.-+ .+++++++|+|++.-......+|+++..+.
T Consensus 174 ~~~~~-~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~ 208 (248)
T PLN02770 174 LEVLK-VSKDHTFVFEDSVSGIKAGVAAGMPVVGLT 208 (248)
T ss_pred HHHhC-CChhHEEEEcCCHHHHHHHHHCCCEEEEEe
Confidence 113 378999999999999888888999876554
No 61
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.53 E-value=4.7e-08 Score=85.52 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=66.4
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC--
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF-- 249 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~-- 249 (332)
.-|+ .++|+++.+.+.++|.|++...+++.+++.+++... +..+ ++..+.. ..||-+.++...
T Consensus 89 ~~~~-~e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~~----fd~i------~~~~~~~----~~KP~p~~~~~~~~ 153 (188)
T PRK10725 89 PLPL-IEVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRRY----FDAV------VAADDVQ----HHKPAPDTFLRCAQ 153 (188)
T ss_pred CccH-HHHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHhH----ceEE------Eehhhcc----CCCCChHHHHHHHH
Confidence 3455 488899888899999999999999999998876411 1122 1211111 237777666541
Q ss_pred -CCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 250 -PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 250 -~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
-+ .++++||+|+|++..+.....+|+++...
T Consensus 154 ~~~-~~~~~~l~igDs~~di~aA~~aG~~~i~~ 185 (188)
T PRK10725 154 LMG-VQPTQCVVFEDADFGIQAARAAGMDAVDV 185 (188)
T ss_pred HcC-CCHHHeEEEeccHhhHHHHHHCCCEEEee
Confidence 24 37899999999999998888888876544
No 62
>PRK11587 putative phosphatase; Provisional
Probab=98.51 E-value=9.8e-08 Score=85.96 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=69.4
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.+||++|++ ++.++|.|+++..++...++..++. .. ..++ +.... ...||-+.++..
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~-~~----~~i~------~~~~~----~~~KP~p~~~~~~ 147 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP-AP----EVFV------TAERV----KRGKPEPDAYLLG 147 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC-Cc----cEEE------EHHHh----cCCCCCcHHHHHH
Confidence 468999999999986 7999999999998888887766652 11 1121 11111 123776666554
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .+++++|+|+|++.........|+....+.+
T Consensus 148 ~~~~g-~~p~~~l~igDs~~di~aA~~aG~~~i~v~~ 183 (218)
T PRK11587 148 AQLLG-LAPQECVVVEDAPAGVLSGLAAGCHVIAVNA 183 (218)
T ss_pred HHHcC-CCcccEEEEecchhhhHHHHHCCCEEEEECC
Confidence 114 4899999999999999888889988766654
No 63
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.49 E-value=1.3e-07 Score=82.73 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=66.0
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ--- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~--- 248 (332)
..||+.++|+.|+ +.++|.|+++..++..+++.+|+.. +|+. ++...+...+....||-+.+|..
T Consensus 85 ~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~--------~fd~--i~~~~~~~~~~~~~KP~p~~~~~~~~ 152 (184)
T TIGR01993 85 PDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED--------CFDG--IFCFDTANPDYLLPKPSPQAYEKALR 152 (184)
T ss_pred CCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh--------hhCe--EEEeecccCccCCCCCCHHHHHHHHH
Confidence 5689999999997 7899999999999999999888741 1221 22221111110113777777664
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
.-+ .+++++++|+|++.........|+..
T Consensus 153 ~~~-~~~~~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 153 EAG-VDPERAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred HhC-CCccceEEEeCCHHHHHHHHHcCCEE
Confidence 124 48999999999998888777888764
No 64
>PLN02560 enoyl-CoA reductase
Probab=98.48 E-value=3.2e-07 Score=87.13 Aligned_cols=71 Identities=28% Similarity=0.358 Sum_probs=57.6
Q ss_pred EEEEEe-CCeEE---EEEecCCCCHHHHHHHHHHHhCC-CCCCceEeec-c---CCCcccCcccccccCCCCCCceEEEE
Q 042485 17 TLTVKW-SGKEY---TVRVCGDDSVAELKRRICELTNV-LPKRQKLLYP-K---IGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 17 ~i~vk~-~g~~~---~i~v~~~~tV~~LK~~I~~~tgv-p~~~QkLl~~-k---~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
+|+|+- +|+.+ +|++++++||+|||++|++..++ +++||+|++. + .+|+.++|+.+|+++|+++|++|++-
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k 81 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK 81 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence 456663 46665 79999999999999999999997 8999999952 1 13447788899999999999988854
No 65
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.47 E-value=9.2e-08 Score=85.22 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=69.8
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.++|+.+++ ++.++|.|++...+++.+++++++.. +|+. +++. ... ...|+-+.++.+
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~--------~f~~--~~~~--~~~--~~~Kp~p~~~~~~ 150 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK--------YFSV--LIGG--DSL--AQRKPHPDPLLLA 150 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh--------hCcE--EEec--CCC--CCCCCChHHHHHH
Confidence 478999999999987 69999999999999999999887742 1111 1111 111 123665544443
Q ss_pred ---CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 ---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
+ + .+++++++|+|++..+.+....|+++..+.
T Consensus 151 ~~~~-~-~~~~~~~~igDs~~d~~aa~~aG~~~i~v~ 185 (213)
T TIGR01449 151 AERL-G-VAPQQMVYVGDSRVDIQAARAAGCPSVLLT 185 (213)
T ss_pred HHHc-C-CChhHeEEeCCCHHHHHHHHHCCCeEEEEc
Confidence 2 3 378999999999999888888998876664
No 66
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.47 E-value=1.4e-07 Score=85.83 Aligned_cols=96 Identities=13% Similarity=0.029 Sum_probs=68.8
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.++|+.|++ ++.++|.|++...++..+++++++.. +|+. +++.. .....||-+.++.+
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~--------~f~~--i~~~~----~~~~~KP~p~~~~~~ 160 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ--------RCAV--LIGGD----TLAERKPHPLPLLVA 160 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh--------cccE--EEecC----cCCCCCCCHHHHHHH
Confidence 468999999999987 69999999999999999998877631 1110 11111 11123776666554
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.-+ .+++++++|+|++....+....|+.+...
T Consensus 161 ~~~l~-~~p~~~l~IGDs~~Di~aA~~aG~~~i~v 194 (229)
T PRK13226 161 AERIG-VAPTDCVYVGDDERDILAARAAGMPSVAA 194 (229)
T ss_pred HHHhC-CChhhEEEeCCCHHHHHHHHHCCCcEEEE
Confidence 124 48999999999998888888888876544
No 67
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.46 E-value=1.2e-07 Score=84.45 Aligned_cols=96 Identities=19% Similarity=0.139 Sum_probs=69.3
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
...||+.++|++|.+ ++.++|.|++...++..+++.+++.. .+..+ ++..+. ...||-+.++...
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~----~f~~i------~~~~~~----~~~KP~~~~~~~~ 140 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP----LFDHV------IGSDEV----PRPKPAPDIVREA 140 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh----heeeE------EecCcC----CCCCCChHHHHHH
Confidence 468999999999987 79999999999999999999887741 11122 111111 1236665555441
Q ss_pred ---CCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 250 ---PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 250 ---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
-+ .+++++++|+|++..+.....+|+.+...
T Consensus 141 ~~~~~-~~~~~~l~igD~~~Di~aA~~~Gi~~i~~ 174 (205)
T TIGR01454 141 LRLLD-VPPEDAVMVGDAVTDLASARAAGTATVAA 174 (205)
T ss_pred HHHcC-CChhheEEEcCCHHHHHHHHHcCCeEEEE
Confidence 13 47899999999998888888899886544
No 68
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.45 E-value=1.3e-07 Score=83.57 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=68.6
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC-
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF- 249 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~- 249 (332)
..||+.++|+.|++ +|.++|.|++...++..+++++|+.. +||. +++.. ..| ..||-+.+|...
T Consensus 93 ~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~--------~fd~--i~~s~--~~~--~~KP~~~~~~~~~ 158 (198)
T TIGR01428 93 PHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDD--------PFDA--VLSAD--AVR--AYKPAPQVYQLAL 158 (198)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChh--------hhhe--eEehh--hcC--CCCCCHHHHHHHH
Confidence 57999999999998 59999999999999999999887631 1221 12111 122 348877776651
Q ss_pred --CCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 250 --PEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 250 --~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
-+ .+++++++|+|++..+......|+...
T Consensus 159 ~~~~-~~p~~~~~vgD~~~Di~~A~~~G~~~i 189 (198)
T TIGR01428 159 EALG-VPPDEVLFVASNPWDLGGAKKFGFKTA 189 (198)
T ss_pred HHhC-CChhhEEEEeCCHHHHHHHHHCCCcEE
Confidence 24 489999999999988887778887654
No 69
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=98.44 E-value=4.8e-07 Score=78.96 Aligned_cols=124 Identities=15% Similarity=0.038 Sum_probs=77.8
Q ss_pred ceEEEecCCceEecc-CCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcH---------------HHHHHHHHHhCCC
Q 042485 148 KLLVLDIDYTLFDHR-STAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSM---------------KWVELKMEELGVL 210 (332)
Q Consensus 148 k~LVLDLD~TLi~~~-~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~---------------~ya~~~l~~l~~~ 210 (332)
|+|+||+||||+... .......+...||+.++|++|++ +|.++|.|+++. .|+..++.++++.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD 81 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 789999999999422 11111235678999999999997 699999999984 4555566555442
Q ss_pred CCCCceEEEEecCCceEE-EeeCCCCCcccccccccccc---CCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 211 TNPNYKITALLDHLAMIT-VQSDSRGIFDCKPLGLIWDQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 211 ~~~~~~~~~~~d~~~~~~-~~~~~~g~~~~KdL~~i~~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
+..++...+... ...........||-+.+|.. .-+ .+++++++|+|++........+|+..
T Consensus 82 ------~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~-~~~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 82 ------LDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELH-IDMAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred ------ccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcC-cChhhEEEEcCCHHHHHHHHHCCCcE
Confidence 112211000000 00000011234777766654 124 48999999999999888888888764
No 70
>PRK09449 dUMP phosphatase; Provisional
Probab=98.39 E-value=6.2e-07 Score=80.76 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=66.2
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ--- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~--- 248 (332)
..||+.++|++|++.|.++|.|++...+++.+++.+|+.. +||. .+... .-| ..||-+.++..
T Consensus 96 ~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~--------~fd~--v~~~~--~~~--~~KP~p~~~~~~~~ 161 (224)
T PRK09449 96 PLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD--------YFDL--LVISE--QVG--VAKPDVAIFDYALE 161 (224)
T ss_pred cCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH--------HcCE--EEEEC--ccC--CCCCCHHHHHHHHH
Confidence 5799999999999899999999999999999998887741 1221 11111 112 24887777665
Q ss_pred -CCCcCCCCcEEEEeCCc-cccccCCCCeeeec
Q 042485 249 -FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIK 279 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~ 279 (332)
+.. .+++++++|+|++ .........|+...
T Consensus 162 ~~~~-~~~~~~~~vgD~~~~Di~~A~~aG~~~i 193 (224)
T PRK09449 162 QMGN-PDRSRVLMVGDNLHSDILGGINAGIDTC 193 (224)
T ss_pred HcCC-CCcccEEEEcCCcHHHHHHHHHCCCcEE
Confidence 322 1457899999998 47777777787543
No 71
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.38 E-value=2.7e-07 Score=80.23 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=64.2
Q ss_pred cceEEEecCCceEeccCCC------------------CCCceecCCcHHHHHHHHHh-CCcEEEEcCC-cHHHHHHHHHH
Q 042485 147 KKLLVLDIDYTLFDHRSTA------------------ENPLQLMRPYLHEFLTAAYA-EYDIMIWSAT-SMKWVELKMEE 206 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~------------------~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas-~~~ya~~~l~~ 206 (332)
.+++|||||+||+...... .+..+.+-|++.+.|+.|+. +..|++.|.+ .+++|..+|+.
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~ 82 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKL 82 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHh
Confidence 5899999999999764421 13357799999999999998 7999999965 68899999999
Q ss_pred hCCCC--CCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCe
Q 042485 207 LGVLT--NPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNG 275 (332)
Q Consensus 207 l~~~~--~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ng 275 (332)
|++.. .+......+|+. .... ++....+.+.+..- .| .+.+.+|+|||..+|...-..=|
T Consensus 83 l~i~~~~~~~~~~~~~F~~---~eI~-~gsK~~Hf~~i~~~----tg-I~y~eMlFFDDe~~N~~~v~~lG 144 (169)
T PF12689_consen 83 LEIDDADGDGVPLIEYFDY---LEIY-PGSKTTHFRRIHRK----TG-IPYEEMLFFDDESRNIEVVSKLG 144 (169)
T ss_dssp TT-C----------CCECE---EEES-SS-HHHHHHHHHHH----H----GGGEEEEES-HHHHHHHHTTT
T ss_pred cCCCccccccccchhhcch---hhee-cCchHHHHHHHHHh----cC-CChhHEEEecCchhcceeeEecC
Confidence 88851 011111222221 1111 11112233333332 24 48899999999999876543333
No 72
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.38 E-value=5.5e-07 Score=80.84 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=66.9
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
.+.||+.+||+++++ ++.++|.|++...++..+|+.+++..... +..++.. ... ...||-+.++...
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~--f~~i~~~--------~~~--~~~KP~p~~~~~a 154 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDD--VDAVVCP--------SDV--AAGRPAPDLILRA 154 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhcc--CCEEEcC--------CcC--CCCCCCHHHHHHH
Confidence 477999999999986 79999999999999999999887631011 1112111 111 1237766666541
Q ss_pred ---CCcCC-CCcEEEEeCCccccccCCCCeeee
Q 042485 250 ---PEFYS-SKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 250 ---~~~~~-~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
-+ .. ++++++|+|++.........|+.+
T Consensus 155 ~~~~~-~~~~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 155 MELTG-VQDVQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred HHHcC-CCChhHeEEeCCCHHHHHHHHHCCCCe
Confidence 12 23 689999999999888888888876
No 73
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.38 E-value=9.1e-07 Score=66.91 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=53.7
Q ss_pred EEEEEeCC-eEEE-EEe-cCCCCHHHHHHHHHHHhC-CCCCCceEeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 17 TLTVKWSG-KEYT-VRV-CGDDSVAELKRRICELTN-VLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 17 ~i~vk~~g-~~~~-i~v-~~~~tV~~LK~~I~~~tg-vp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
.|.++-.+ +.+. +++ ++++||.+||.+|++..+ ++++||+|... ..|+.+.|+.+|+++|+++|++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~-~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLE-PKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeC-CCCcccCCcccHhhcCCCCCCEEEE
Confidence 45555445 4433 333 688999999999999976 58999999622 2788888889999999999998875
No 74
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.38 E-value=1.2e-06 Score=76.73 Aligned_cols=123 Identities=13% Similarity=0.052 Sum_probs=80.9
Q ss_pred cceEEEecCCceEeccCCCCC--CceecCCcHHHHHHHHHh-CCcEEEEcCCcH---------------HHHHHHHHHhC
Q 042485 147 KKLLVLDIDYTLFDHRSTAEN--PLQLMRPYLHEFLTAAYA-EYDIMIWSATSM---------------KWVELKMEELG 208 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~--~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~---------------~ya~~~l~~l~ 208 (332)
.|.|+||+||||+-....... ......||+.++|++|++ .|.++|.|+++. .++..+++.+|
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 82 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRG 82 (181)
T ss_pred ccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcC
Confidence 589999999999866422111 135688999999999998 699999998873 45555666555
Q ss_pred CCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC---CCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 209 VLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF---PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 209 ~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
+. +..++.. ...........||-+.+|... -+ .+++++++|+|++.........|+.+.-.
T Consensus 83 ~~------f~~i~~~-----~~~~~~~~~~~KP~p~~~~~~~~~l~-~~~~~~~~VgDs~~Di~~A~~aG~~~i~v 146 (181)
T PRK08942 83 GR------LDGIYYC-----PHHPEDGCDCRKPKPGMLLSIAERLN-IDLAGSPMVGDSLRDLQAAAAAGVTPVLV 146 (181)
T ss_pred Cc------cceEEEC-----CCCCCCCCcCCCCCHHHHHHHHHHcC-CChhhEEEEeCCHHHHHHHHHCCCeEEEE
Confidence 41 1122110 000111112358877777651 24 48999999999998888877888764433
No 75
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.37 E-value=2.1e-07 Score=80.93 Aligned_cols=91 Identities=15% Similarity=0.183 Sum_probs=63.0
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.++|+.+.+ ++.++|.|++ .+++.+++.+++... +..++ ..... ...||-+.++.+
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~----f~~v~------~~~~~----~~~kp~~~~~~~~ 151 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDY----FDAIV------DADEV----KEGKPHPETFLLA 151 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHH----CCEee------ehhhC----CCCCCChHHHHHH
Confidence 478999999999987 6999999988 788999988877421 11121 11111 123665554443
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
.-+ .+++++|+|+|+.........+|++.
T Consensus 152 ~~~~~-~~~~~~v~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 152 AELLG-VSPNECVVFEDALAGVQAARAAGMFA 182 (185)
T ss_pred HHHcC-CCHHHeEEEeCcHhhHHHHHHCCCeE
Confidence 114 47899999999999888887888764
No 76
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.36 E-value=4.2e-07 Score=85.11 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=64.1
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccc--ccccccc
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKP--LGLIWDQ 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~Kd--L~~i~~~ 248 (332)
..||+.++|+.|++ .+.++|.|++...+++.+++.+|+.. .+..+. +.. .. . -|+ +..+-.+
T Consensus 143 l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~----~F~~vi------~~~-~~-~---~k~~~~~~~l~~ 207 (273)
T PRK13225 143 LFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS----LFSVVQ------AGT-PI-L---SKRRALSQLVAR 207 (273)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh----heEEEE------ecC-CC-C---CCHHHHHHHHHH
Confidence 57999999999987 69999999999999999999888741 111221 111 10 0 122 1222122
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
+ + .+++++++|+|++.........|+.+...
T Consensus 208 ~-~-~~p~~~l~IGDs~~Di~aA~~AG~~~I~v 238 (273)
T PRK13225 208 E-G-WQPAAVMYVGDETRDVEAARQVGLIAVAV 238 (273)
T ss_pred h-C-cChhHEEEECCCHHHHHHHHHCCCeEEEE
Confidence 2 3 37899999999998888888888876544
No 77
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.36 E-value=1.1e-06 Score=72.31 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=81.5
Q ss_pred eEEEecCCceEeccCC-----------------CCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 149 LLVLDIDYTLFDHRST-----------------AENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~-----------------~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
++|||+|+||+++..- ..+..+.++|++.+||+++.. +|-+..+|.+-..-|-.+|++|++.
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~ 81 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLL 81 (164)
T ss_pred cEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchh
Confidence 5899999999987541 124568899999999999998 7999999999999999999998875
Q ss_pred CCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccc---cCCCCeeeeccccC
Q 042485 211 TNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFV---MNPQNGLAIKPFRK 283 (332)
Q Consensus 211 ~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~---~~p~Ngi~I~~f~~ 283 (332)
. +|+-. .+.. .+.++....+=|+.|-........|.++|++||....+. .+-+|.=.+..|.+
T Consensus 82 ~--------yFhy~-VieP-hP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe~~G~V~~~~~~~D 147 (164)
T COG4996 82 Q--------YFHYI-VIEP-HPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWEYLGNVKCLEMWKD 147 (164)
T ss_pred h--------hEEEE-EecC-CChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHHhcCCeeeeEeecc
Confidence 1 11100 1111 112222222333444222222247899999999987663 34555554555543
No 78
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.35 E-value=4e-07 Score=82.07 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=70.1
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
...||+.++|+.+++ .+.++|.|++...+++.+++++++.. +|+. .++.. .....|+-+.++...
T Consensus 92 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~--------~f~~--~~~~~----~~~~~Kp~~~~~~~~ 157 (222)
T PRK10826 92 PLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD--------YFDA--LASAE----KLPYSKPHPEVYLNC 157 (222)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh--------cccE--EEEcc----cCCCCCCCHHHHHHH
Confidence 367899999999986 79999999999999999999887642 1211 11111 112236655555431
Q ss_pred ---CCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 250 ---PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 250 ---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
-+ .+++++++|+|++.-.......|++..-+..
T Consensus 158 ~~~~~-~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~ 193 (222)
T PRK10826 158 AAKLG-VDPLTCVALEDSFNGMIAAKAARMRSIVVPA 193 (222)
T ss_pred HHHcC-CCHHHeEEEcCChhhHHHHHHcCCEEEEecC
Confidence 14 4889999999999988888889988766654
No 79
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.34 E-value=4.2e-07 Score=78.65 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=63.3
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
...||+.+||+.+++ ++.++|.|++...+ ..++.++|+... +..++ .. ...+ ..||-+.+|...
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~----f~~i~------~~--~~~~--~~KP~~~~~~~~ 149 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDL----FDVVI------FS--GDVG--RGKPDPDIYLLA 149 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHH----CCEEE------Ec--CCCC--CCCCCHHHHHHH
Confidence 467999999999987 79999999999998 666555666311 11111 11 1111 337766666541
Q ss_pred ---CCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 250 ---PEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 250 ---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
-+ .+++++++|||++.........|+..
T Consensus 150 ~~~~~-~~~~~~~~vgD~~~di~aA~~~G~~~ 180 (183)
T TIGR01509 150 LKKLG-LKPEECLFVDDSPAGIEAAKAAGMHT 180 (183)
T ss_pred HHHcC-CCcceEEEEcCCHHHHHHHHHcCCEE
Confidence 24 48999999999998887777777653
No 80
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.34 E-value=1.1e-07 Score=80.78 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=68.1
Q ss_pred ceecCCcHHHHHHHHH-hCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccc
Q 042485 169 LQLMRPYLHEFLTAAY-AEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWD 247 (332)
Q Consensus 169 ~~~~RP~l~eFL~~l~-~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~ 247 (332)
.....|++.+||+.++ +++.++|.|+++..++..+++++|+...+. .++ +. ...| ..||-+.+|.
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~----~i~------~~--~~~~--~~Kp~~~~~~ 140 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFD----EII------SS--DDVG--SRKPDPDAYR 140 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCS----EEE------EG--GGSS--SSTTSHHHHH
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccc----ccc------cc--chhh--hhhhHHHHHH
Confidence 3568999999999999 589999999999999999999998752111 221 11 1122 2366555554
Q ss_pred cC---CCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 248 QF---PEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 248 ~~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
.. -+ .+++++++|||++..+......|+..
T Consensus 141 ~~~~~~~-~~p~~~~~vgD~~~d~~~A~~~G~~~ 173 (176)
T PF13419_consen 141 RALEKLG-IPPEEILFVGDSPSDVEAAKEAGIKT 173 (176)
T ss_dssp HHHHHHT-SSGGGEEEEESSHHHHHHHHHTTSEE
T ss_pred HHHHHcC-CCcceEEEEeCCHHHHHHHHHcCCeE
Confidence 41 14 48999999999998887776666653
No 81
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.33 E-value=5.7e-07 Score=80.56 Aligned_cols=96 Identities=16% Similarity=0.262 Sum_probs=68.7
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..+||+.++|+++++.+.++|-|++...+++.+++.+++.. +||. ++... .-| ..||-+.++.+
T Consensus 97 ~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~--------~fd~--i~~~~--~~~--~~KP~~~~~~~~~ 162 (224)
T TIGR02254 97 QLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP--------FFDD--IFVSE--DAG--IQKPDKEIFNYAL 162 (224)
T ss_pred eeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh--------hcCE--EEEcC--ccC--CCCCCHHHHHHHH
Confidence 46899999999999889999999999999999999887742 1221 22111 111 34776666554
Q ss_pred --CCCcCCCCcEEEEeCCc-cccccCCCCeeeeccc
Q 042485 249 --FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f 281 (332)
+++ .+++++|+|+|++ ........+|+...-+
T Consensus 163 ~~~~~-~~~~~~v~igD~~~~di~~A~~~G~~~i~~ 197 (224)
T TIGR02254 163 ERMPK-FSKEEVLMIGDSLTADIKGGQNAGLDTCWM 197 (224)
T ss_pred HHhcC-CCchheEEECCCcHHHHHHHHHCCCcEEEE
Confidence 324 4899999999998 5777777788654433
No 82
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.32 E-value=7.7e-07 Score=81.88 Aligned_cols=97 Identities=9% Similarity=-0.045 Sum_probs=69.8
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC-
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF- 249 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~- 249 (332)
..||+.++|++|++ ++.++|.|++...+++.+++++|+.... +.+++ +..+. ...||-+.++.+.
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f---~d~ii------~~~~~----~~~KP~p~~~~~a~ 166 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYR---PDYNV------TTDDV----PAGRPAPWMALKNA 166 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCC---CceEE------ccccC----CCCCCCHHHHHHHH
Confidence 57899999999987 6999999999999999999988875211 11221 11111 1237766665541
Q ss_pred --CCcC-CCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 250 --PEFY-SSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 250 --~~~~-~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
-+ . +++++|+|.|++.-+......|+.+..+.
T Consensus 167 ~~l~-~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~ 201 (253)
T TIGR01422 167 IELG-VYDVAACVKVGDTVPDIEEGRNAGMWTVGLI 201 (253)
T ss_pred HHcC-CCCchheEEECCcHHHHHHHHHCCCeEEEEe
Confidence 13 2 48899999999999998888998876664
No 83
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.31 E-value=6.7e-07 Score=83.63 Aligned_cols=92 Identities=9% Similarity=0.106 Sum_probs=64.7
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
.+||+.++|+.+++ ++.++|.|+++..+++.+++++++.. . +..++ +.... ...|+-+.++..
T Consensus 102 ~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~--~--f~~i~------~~d~~----~~~Kp~p~~~~~~~ 167 (272)
T PRK13223 102 VYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR--Y--FRWII------GGDTL----PQKKPDPAALLFVM 167 (272)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh--h--CeEEE------ecCCC----CCCCCCcHHHHHHH
Confidence 58999999999987 79999999999999999998876631 1 11121 11111 123554443332
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
.-+ .+++++|+|+|+.....+...+|+..
T Consensus 168 ~~~g-~~~~~~l~IGD~~~Di~aA~~aGi~~ 197 (272)
T PRK13223 168 KMAG-VPPSQSLFVGDSRSDVLAAKAAGVQC 197 (272)
T ss_pred HHhC-CChhHEEEECCCHHHHHHHHHCCCeE
Confidence 114 48999999999999888888888764
No 84
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.29 E-value=1.3e-06 Score=81.80 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=53.9
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecC-CcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMR-PYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~R-P~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
+-++++||||||||+... ..+..| ||+.++|++|.+ ++.++|||++...++...|+++|+.
T Consensus 124 ~~~kvIvFDLDgTLi~~~-----~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd 186 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDE-----EPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLD 186 (301)
T ss_pred ccceEEEEecCCCCcCCC-----CccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCC
Confidence 356799999999999663 246688 999999999999 6999999999999999999999885
No 85
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.28 E-value=9.4e-07 Score=79.45 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=67.2
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC-
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF- 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~- 249 (332)
...||+.++|+.+. +.++|.|++...+++.+|+.+++.. +|+. ..++. ...| ..||-+.++...
T Consensus 88 ~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~--------~F~~-~v~~~--~~~~--~~KP~p~~~~~a~ 152 (221)
T PRK10563 88 EPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH--------YFPD-KLFSG--YDIQ--RWKPDPALMFHAA 152 (221)
T ss_pred CcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH--------hCcc-eEeeH--HhcC--CCCCChHHHHHHH
Confidence 46789999999994 8999999999999999998877741 1110 01111 1112 237766666541
Q ss_pred --CCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 250 --PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 250 --~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
-+ .++++||+|+|++.........|+.+.-+
T Consensus 153 ~~~~-~~p~~~l~igDs~~di~aA~~aG~~~i~~ 185 (221)
T PRK10563 153 EAMN-VNVENCILVDDSSAGAQSGIAAGMEVFYF 185 (221)
T ss_pred HHcC-CCHHHeEEEeCcHhhHHHHHHCCCEEEEE
Confidence 13 37899999999999988888889887644
No 86
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.25 E-value=3.6e-06 Score=64.17 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=44.3
Q ss_pred eEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc--CcccccccCCCCCCceEEE
Q 042485 15 ELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA--DDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 15 ~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l--~d~~~L~~~~i~~g~~l~l 86 (332)
.|-|+|......+.|++++++|+++|+++|++.+++|+..|.|..-.-+...+ .++.+|+++||+-|+-|.|
T Consensus 4 ~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL 77 (80)
T PF11543_consen 4 SMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL 77 (80)
T ss_dssp --EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred cEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence 45588888888899999999999999999999999999999886311011223 4678999999999998876
No 87
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.24 E-value=1.4e-06 Score=78.30 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=66.0
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccc-
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWD- 247 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~- 247 (332)
...+||+.+||+.+++ .+.++|.|++...++..+++.+++... +..++... .. ...|+-+.++.
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~----f~~~~~~~--------~~--~~~kp~~~~~~~ 157 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADY----FSVVIGGD--------SL--PNKKPDPAPLLL 157 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccC----ccEEEcCC--------CC--CCCCcChHHHHH
Confidence 3478999999999997 799999999999999999998876311 11222111 11 12354333322
Q ss_pred ---cCCCcCCCCcEEEEeCCccccccCCCCeeeecc
Q 042485 248 ---QFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKP 280 (332)
Q Consensus 248 ---~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~ 280 (332)
++ + .+++++++|+|++..+.+....|+....
T Consensus 158 ~~~~~-~-~~~~~~i~igD~~~Di~~a~~~g~~~i~ 191 (226)
T PRK13222 158 ACEKL-G-LDPEEMLFVGDSRNDIQAARAAGCPSVG 191 (226)
T ss_pred HHHHc-C-CChhheEEECCCHHHHHHHHHCCCcEEE
Confidence 23 3 4889999999999888887777775433
No 88
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.24 E-value=5.3e-06 Score=71.99 Aligned_cols=118 Identities=22% Similarity=0.338 Sum_probs=75.8
Q ss_pred CcCCcceEEEecCCceEeccCCC-----CCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHH------------HHHHHH
Q 042485 143 SREGKKLLVLDIDYTLFDHRSTA-----ENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMK------------WVELKM 204 (332)
Q Consensus 143 ~~~~kk~LVLDLD~TLi~~~~~~-----~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~------------ya~~~l 204 (332)
|...+++++||+||||+.+.... ...+...-||+.+.|+.|++ +|.++|.|+.+.. +++.+|
T Consensus 9 ~~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l 88 (166)
T TIGR01664 9 PKPQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFL 88 (166)
T ss_pred CCCcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHH
Confidence 34567899999999999864311 01122356999999999986 8999999998763 577788
Q ss_pred HHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc----CC-CcCCCCcEEEEeCCc--------cccccC
Q 042485 205 EELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ----FP-EFYSSKNTIMFDDLR--------RNFVMN 271 (332)
Q Consensus 205 ~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~----~~-~~~~~~~~iivDD~~--------~~~~~~ 271 (332)
+++|+. ..++. ..+ .+ ..-||-+.++.. ++ + .+++++++|.|++ .-....
T Consensus 89 ~~~gl~------~~~ii------~~~---~~-~~~KP~p~~~~~~~~~~~~~-~~~~~~v~VGD~~~~~~~~~~~Di~aA 151 (166)
T TIGR01664 89 EKLKVP------IQVLA------ATH---AG-LYRKPMTGMWEYLQSQYNSP-IKMTRSFYVGDAAGRKLDFSDADIKFA 151 (166)
T ss_pred HHcCCC------EEEEE------ecC---CC-CCCCCccHHHHHHHHHcCCC-CCchhcEEEECCCCCCCCCchhHHHHH
Confidence 888762 11211 111 11 123664444432 33 1 3789999999996 234555
Q ss_pred CCCeee
Q 042485 272 PQNGLA 277 (332)
Q Consensus 272 p~Ngi~ 277 (332)
..+|+.
T Consensus 152 ~~aGi~ 157 (166)
T TIGR01664 152 KNLGLE 157 (166)
T ss_pred HHCCCC
Confidence 566664
No 89
>PLN02940 riboflavin kinase
Probab=98.23 E-value=7.6e-07 Score=87.28 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=68.1
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHH-HhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKME-ELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~-~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
...||+.++|+.|++ .+.++|.|++...+++.+++ .+++.. .+.+++ +..+. ...||-+.++..
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~----~Fd~ii------~~d~v----~~~KP~p~~~~~ 158 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKE----SFSVIV------GGDEV----EKGKPSPDIFLE 158 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHh----hCCEEE------ehhhc----CCCCCCHHHHHH
Confidence 357999999999987 69999999999999998886 455421 111221 11111 123777766654
Q ss_pred C---CCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 F---PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 ~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
. -+ .+++++|+|+|++.........|+.+....
T Consensus 159 a~~~lg-v~p~~~l~VGDs~~Di~aA~~aGi~~I~v~ 194 (382)
T PLN02940 159 AAKRLN-VEPSNCLVIEDSLPGVMAGKAAGMEVIAVP 194 (382)
T ss_pred HHHHcC-CChhHEEEEeCCHHHHHHHHHcCCEEEEEC
Confidence 1 14 489999999999998888888888755543
No 90
>PRK06769 hypothetical protein; Validated
Probab=98.23 E-value=2.4e-06 Score=74.55 Aligned_cols=123 Identities=12% Similarity=0.035 Sum_probs=78.6
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHH--------HHHHHHHHhCCCCCCCce
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMK--------WVELKMEELGVLTNPNYK 216 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~--------ya~~~l~~l~~~~~~~~~ 216 (332)
+-+.|+||+||||.-.........+...||+.++|++|++ +|.++|.|++... .+...++.+|+.
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~------ 76 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFD------ 76 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcC------
Confidence 5678999999999633221111235578999999999987 7999999998641 122334444431
Q ss_pred EEEEecCCceEEEeeCCCCCccccccccccccC---CCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 217 ITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF---PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 217 ~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
.++. .......+....||-+.++.+. -+ .++++|++|+|++.........|+.+.-+.
T Consensus 77 --~~~~-----~~~~~~~~~~~~KP~p~~~~~~~~~l~-~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~ 137 (173)
T PRK06769 77 --DIYL-----CPHKHGDGCECRKPSTGMLLQAAEKHG-LDLTQCAVIGDRWTDIVAAAKVNATTILVR 137 (173)
T ss_pred --EEEE-----CcCCCCCCCCCCCCCHHHHHHHHHHcC-CCHHHeEEEcCCHHHHHHHHHCCCeEEEEe
Confidence 1111 1111112223458777666552 24 389999999999988888888888766554
No 91
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=98.22 E-value=2.8e-06 Score=73.37 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=86.4
Q ss_pred cceEEEecCCceEeccCCC----CCCceecCCcHHHHHHHHHh-CCcEEEEcCC---------------cHHHHHHHHHH
Q 042485 147 KKLLVLDIDYTLFDHRSTA----ENPLQLMRPYLHEFLTAAYA-EYDIMIWSAT---------------SMKWVELKMEE 206 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~----~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas---------------~~~ya~~~l~~ 206 (332)
.|.++||.||||++..... ....+..-||+.++|++|++ +|.++|.|+. ...++..+++.
T Consensus 1 ~~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~ 80 (161)
T TIGR01261 1 QKILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRS 80 (161)
T ss_pred CCEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH
Confidence 3789999999999954311 11245678999999999998 7999999996 35688888888
Q ss_pred hCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 207 LGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 207 l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
+|+. +..++ ++...........||-+.++.. ..+ .+++++++|.|+..-..+...+|+....+..
T Consensus 81 ~gl~------fd~ii-----~~~~~~~~~~~~~KP~~~~~~~~~~~~~-~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~ 148 (161)
T TIGR01261 81 QGII------FDDVL-----ICPHFPDDNCDCRKPKIKLLEPYLKKNL-IDKARSYVIGDRETDMQLAENLGIRGIQYDE 148 (161)
T ss_pred CCCc------eeEEE-----ECCCCCCCCCCCCCCCHHHHHHHHHHcC-CCHHHeEEEeCCHHHHHHHHHCCCeEEEECh
Confidence 8773 21111 0000000111234777666654 123 3889999999998888888889998877765
No 92
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.22 E-value=7e-06 Score=59.69 Aligned_cols=67 Identities=19% Similarity=0.383 Sum_probs=62.5
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 22 WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 22 ~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
..|+.+.+++.+..+|..+|.+|+...|+|+..|.+.+ +|+.+.|+.+|.+|+|..+.++.|+.+..
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~---~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF---GGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE---CCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 67899999999999999999999999999999999997 88999999999999999999999887654
No 93
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=98.22 E-value=2.6e-06 Score=76.40 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=64.4
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
..+||+.+||+.+.+ ++.++|.|++...+++.+++.+++.. -+.....++. ..++....... ...++=+.++.+
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~--~~~~~~~~~~-~~~~~~~~~~~-~~~~~k~~~~~~~ 160 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA--AFANRLEVED-GKLTGLVEGPI-VDASYKGKTLLIL 160 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc--eEeeEEEEEC-CEEEEEecCcc-cCCcccHHHHHHH
Confidence 479999999999998 79999999999999999999888742 1110011111 11111100000 000111222221
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
..+ .++++|++|+|++....+....|+.|
T Consensus 161 ~~~~~-~~~~~~i~iGDs~~Di~aa~~ag~~i 191 (219)
T TIGR00338 161 LRKEG-ISPENTVAVGDGANDLSMIKAAGLGI 191 (219)
T ss_pred HHHcC-CCHHHEEEEECCHHHHHHHHhCCCeE
Confidence 113 48899999999998888777778876
No 94
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.20 E-value=1.9e-06 Score=69.71 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=51.8
Q ss_pred eEEEecCCceEeccCCCC-CCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 149 LLVLDIDYTLFDHRSTAE-NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~~-~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
++|||+||||+....... ......+|++.+||+.+.+ ++.++|.|++...++...++.+++.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~ 64 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLD 64 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCc
Confidence 489999999998764321 1235789999999999999 4999999999999999999988763
No 95
>PLN02954 phosphoserine phosphatase
Probab=98.20 E-value=3.5e-06 Score=75.86 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=61.5
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCC--CCccccccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSR--GIFDCKPLGLIWD 247 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~--g~~~~KdL~~i~~ 247 (332)
..+||+.++|+.+++ ++.++|.|++...+++.+++.+|+.....+.....++....+....... ....-|+.. ..
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~--i~ 161 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEA--VQ 161 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHH--HH
Confidence 367999999999987 6999999999999999999998884211111111122111111100000 000114421 11
Q ss_pred cCCCcCCCCcEEEEeCCccccccCCCCeee
Q 042485 248 QFPEFYSSKNTIMFDDLRRNFVMNPQNGLA 277 (332)
Q Consensus 248 ~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~ 277 (332)
++..+++.+++|+|-|+..-..+...+|+.
T Consensus 162 ~~~~~~~~~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 162 HIKKKHGYKTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred HHHHHcCCCceEEEeCCHHHHHhhhcCCCC
Confidence 111113457899999999888876555554
No 96
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.19 E-value=2.7e-06 Score=79.69 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=54.3
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecC-CcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMR-PYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~R-P~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
+-++++||||||||+... ..+..| |++.++|++|++ ++.++|||++...++...|+++|+.
T Consensus 126 ~~~~~i~~D~D~TL~~~~-----~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~ 188 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDE-----EPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLE 188 (303)
T ss_pred eeccEEEEecCCCccCCC-----CccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCC
Confidence 467899999999999773 346688 999999999999 7999999999999999999999884
No 97
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.19 E-value=1.3e-06 Score=77.90 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=63.6
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHH--HHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKW--VELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWD 247 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~y--a~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~ 247 (332)
...||+.++|+.|++ +|.++|.|++...+ ....+..+++. .+||. ++... ..| ..||-+.+|.
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~--------~~fd~--v~~s~--~~~--~~KP~p~~~~ 159 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM--------ALFDA--VVESC--LEG--LRKPDPRIYQ 159 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH--------hhCCE--EEEee--ecC--CCCCCHHHHH
Confidence 367999999999997 69999999987654 22222222221 11221 11111 111 2487777765
Q ss_pred cC---CCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 248 QF---PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 248 ~~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.. -+ .+++++++|||++.........|+...-+..
T Consensus 160 ~~~~~~g-~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 160 LMLERLG-VAPEECVFLDDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred HHHHHcC-CCHHHeEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 41 14 4899999999999999988889988766643
No 98
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=98.17 E-value=9.1e-07 Score=76.94 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=62.3
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc-
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~- 248 (332)
...||+.++|++|++ ++.++|-|++. .+..+++++++... +..++ +..+ .+ ..|+-+.++.+
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~~~----f~~~~------~~~~--~~--~~kp~p~~~~~~ 150 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLIDY----FDAIV------DPAE--IK--KGKPDPEIFLAA 150 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcHhh----CcEEE------ehhh--cC--CCCCChHHHHHH
Confidence 356999999999987 69999999764 35667887776311 11221 1111 11 23776666654
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
.-+ .+++++|+|+|++..+.....+|++..
T Consensus 151 ~~~~~-~~~~~~v~vgD~~~di~aA~~aG~~~i 182 (185)
T TIGR01990 151 AEGLG-VSPSECIGIEDAQAGIEAIKAAGMFAV 182 (185)
T ss_pred HHHcC-CCHHHeEEEecCHHHHHHHHHcCCEEE
Confidence 114 488999999999988888888888654
No 99
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.16 E-value=1.7e-06 Score=86.71 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=66.0
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
.+.||+.++|++|++ ++.++|.|++...+++.+++.+++.. +|+. +++..+.. + .-||- ++...
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~--------~f~~--i~~~d~v~-~--~~kP~--~~~~a 394 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ--------WVTE--TFSIEQIN-S--LNKSD--LVKSI 394 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh--------hcce--eEecCCCC-C--CCCcH--HHHHH
Confidence 457999999999987 79999999999999999999887641 1111 11211111 1 11442 22221
Q ss_pred CCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 250 PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 250 ~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
-.+++++++|+|.|++.-+......|+.+..+
T Consensus 395 l~~l~~~~~v~VGDs~~Di~aAk~AG~~~I~v 426 (459)
T PRK06698 395 LNKYDIKEAAVVGDRLSDINAAKDNGLIAIGC 426 (459)
T ss_pred HHhcCcceEEEEeCCHHHHHHHHHCCCeEEEE
Confidence 12257899999999998888888889875444
No 100
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.15 E-value=1.5e-06 Score=76.80 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=61.1
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCC
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFP 250 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~ 250 (332)
...||+.++|+.|++.+.+++-|++........++.+++.......+.. +++... ..+ |+ .++...-
T Consensus 74 ~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~------i~~~~~-~~~----kp--~~~~~a~ 140 (197)
T PHA02597 74 SAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFSE------VLMCGH-DES----KE--KLFIKAK 140 (197)
T ss_pred cCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcccE------EEEecc-Ccc----cH--HHHHHHH
Confidence 4799999999999987888777776665555455656553111011111 222111 111 32 2332211
Q ss_pred CcCCCCcEEEEeCCccccccCCCC--eeeeccccC
Q 042485 251 EFYSSKNTIMFDDLRRNFVMNPQN--GLAIKPFRK 283 (332)
Q Consensus 251 ~~~~~~~~iivDD~~~~~~~~p~N--gi~I~~f~~ 283 (332)
.++.++.+|+|||+..+......+ |+.+.-+..
T Consensus 141 ~~~~~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~ 175 (197)
T PHA02597 141 EKYGDRVVCFVDDLAHNLDAAHEALSQLPVIHMLR 175 (197)
T ss_pred HHhCCCcEEEeCCCHHHHHHHHHHHcCCcEEEecc
Confidence 223577899999999999888888 998777744
No 101
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.15 E-value=1.7e-06 Score=76.70 Aligned_cols=98 Identities=21% Similarity=0.255 Sum_probs=68.0
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHh-CCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEEL-GVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l-~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
...||+.++|+.+++ +|.++|.|++....++..+... ++. .+||. +++..+ .| ..||-+.+|..
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~--------~~fd~--v~~s~~--~~--~~KP~p~~~~~ 149 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVR--------AAADH--IYLSQD--LG--MRKPEARIYQH 149 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHH--------HhcCE--EEEecc--cC--CCCCCHHHHHH
Confidence 368999999999987 7999999999987766544321 221 11221 222222 22 23888877765
Q ss_pred ---CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 ---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .+++++++|||++.+.......|+...-+.+
T Consensus 150 ~~~~~~-~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 150 VLQAEG-FSAADAVFFDDNADNIEAANALGITSILVTD 186 (199)
T ss_pred HHHHcC-CChhHeEEeCCCHHHHHHHHHcCCEEEEecC
Confidence 124 4899999999999998888899998776654
No 102
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.15 E-value=5.9e-06 Score=76.80 Aligned_cols=97 Identities=11% Similarity=0.022 Sum_probs=68.1
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..||+.++|+.|++ .+.++|.|++....++.+++.+++.... +..++ +..+. ...||-+.++..
T Consensus 102 ~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~---~d~i~------~~~~~----~~~KP~p~~~~~a~ 168 (267)
T PRK13478 102 PIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYR---PDHVV------TTDDV----PAGRPYPWMALKNA 168 (267)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCC---ceEEE------cCCcC----CCCCCChHHHHHHH
Confidence 57899999999987 6999999999999999999877654210 11121 11111 123776666544
Q ss_pred --CCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
+.. -+++++|+|+|++..+......|+....+.
T Consensus 169 ~~l~~-~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~ 203 (267)
T PRK13478 169 IELGV-YDVAACVKVDDTVPGIEEGLNAGMWTVGVI 203 (267)
T ss_pred HHcCC-CCCcceEEEcCcHHHHHHHHHCCCEEEEEc
Confidence 222 136899999999999988888998766654
No 103
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.8e-06 Score=89.49 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=64.8
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
..+|.|| ...++.++.+...+||.+||..|.+.++|+.+.|+||| +|+.|.|+.++.+|+| +|.+|+|+-
T Consensus 2 e~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~---~grvl~~~k~vq~~~v-dgk~~hlve 72 (1143)
T KOG4248|consen 2 EPNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIY---QGRVLQDDKKVQEYNV-DGKVIHLVE 72 (1143)
T ss_pred CcceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeee---cceeeccchhhhhccC-CCeEEEeec
Confidence 4558899 56788999999999999999999999999999999999 9999999999999999 999999874
No 104
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.13 E-value=3.6e-06 Score=75.05 Aligned_cols=98 Identities=20% Similarity=0.247 Sum_probs=69.7
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
+.-|-|.+||-.|.+.+ .++||++.+..|..+|+.||+. |-.-.+.| |....+......+||....+.+
T Consensus 100 kPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGie-DcFegii~-------~e~~np~~~~~vcKP~~~afE~a~ 170 (244)
T KOG3109|consen 100 KPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIE-DCFEGIIC-------FETLNPIEKTVVCKPSEEAFEKAM 170 (244)
T ss_pred CCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChH-HhccceeE-------eeccCCCCCceeecCCHHHHHHHH
Confidence 44557899999998877 8999999999999999999985 22211211 1111111234567998888776
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeee
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLA 277 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~ 277 (332)
..|.=+++||++|||+.+|......=|+.
T Consensus 171 k~agi~~p~~t~FfDDS~~NI~~ak~vGl~ 200 (244)
T KOG3109|consen 171 KVAGIDSPRNTYFFDDSERNIQTAKEVGLK 200 (244)
T ss_pred HHhCCCCcCceEEEcCchhhHHHHHhccce
Confidence 33532499999999999999887776654
No 105
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.13 E-value=4e-06 Score=73.73 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=63.1
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeC-CCCCcccc--cccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSD-SRGIFDCK--PLGLIW 246 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~-~~g~~~~K--dL~~i~ 246 (332)
..+||+.++|+++.+ .+.++|.|++...+++.+++.+|+. ..+-.....+.....+.... ..+ ...| -+..+-
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~g~~~p~~~~~~~-~~~k~~~~~~~~ 156 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD--YVYSNELVFDEKGFIQPDGIVRVT-FDNKGEAVERLK 156 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC--eEEEEEEEEcCCCeEecceeeEEc-cccHHHHHHHHH
Confidence 468999999999987 7999999999999999999998863 11111111121111110000 000 0011 122221
Q ss_pred ccCCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 247 DQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 247 ~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
.++ + .+++++++|.|+.....+....|+.+.
T Consensus 157 ~~~-~-~~~~~~i~iGDs~~D~~~a~~ag~~~a 187 (201)
T TIGR01491 157 REL-N-PSLTETVAVGDSKNDLPMFEVADISIS 187 (201)
T ss_pred HHh-C-CCHHHEEEEcCCHhHHHHHHhcCCeEE
Confidence 111 3 378999999999888777767777553
No 106
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.08 E-value=5.5e-06 Score=74.40 Aligned_cols=93 Identities=20% Similarity=0.220 Sum_probs=69.1
Q ss_pred eecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC
Q 042485 170 QLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
....|++.++|+.++..|.++|.|++...+...+++++|+. + +||. .++ +...| ..||-+.+|...
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~-~-------~Fd~--v~~--s~~~g--~~KP~~~~f~~~ 163 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLL-D-------YFDA--VFI--SEDVG--VAKPDPEIFEYA 163 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCCh-h-------hhhe--EEE--ecccc--cCCCCcHHHHHH
Confidence 34678999999999988999999999999999999999853 2 2221 111 12233 569999998762
Q ss_pred ---CCcCCCCcEEEEeCCcccc-ccCCCCeee
Q 042485 250 ---PEFYSSKNTIMFDDLRRNF-VMNPQNGLA 277 (332)
Q Consensus 250 ---~~~~~~~~~iivDD~~~~~-~~~p~Ngi~ 277 (332)
-+ .+++++++|||+..+- .....-|+.
T Consensus 164 ~~~~g-~~p~~~l~VgD~~~~di~gA~~~G~~ 194 (229)
T COG1011 164 LEKLG-VPPEEALFVGDSLENDILGARALGMK 194 (229)
T ss_pred HHHcC-CCcceEEEECCChhhhhHHHHhcCcE
Confidence 23 3799999999999998 555566665
No 107
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.08 E-value=6.4e-06 Score=72.95 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=59.7
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..||+.++|++|++ ++.++|.|++... +..+++.+|+.. +|+. ++.. ...| ..||-+.+|.+
T Consensus 106 ~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~--------~fd~--i~~s--~~~~--~~KP~~~~~~~~~ 170 (203)
T TIGR02252 106 VYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLE--------YFDF--VVTS--YEVG--AEKPDPKIFQEAL 170 (203)
T ss_pred eCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHH--------hcce--EEee--cccC--CCCCCHHHHHHHH
Confidence 46899999999997 6999999998765 477888776631 1111 1111 1122 23777666654
Q ss_pred -CCCcCCCCcEEEEeCCc-cccccCCCCeee
Q 042485 249 -FPEFYSSKNTIMFDDLR-RNFVMNPQNGLA 277 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~ 277 (332)
.-+ .+++++|+|+|++ .........|+.
T Consensus 171 ~~~~-~~~~~~~~IgD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 171 ERAG-ISPEEALHIGDSLRNDYQGARAAGWR 200 (203)
T ss_pred HHcC-CChhHEEEECCCchHHHHHHHHcCCe
Confidence 124 4899999999997 456665566654
No 108
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.05 E-value=8.5e-06 Score=77.96 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=69.9
Q ss_pred CcceEEEecCCceEeccCCCCC---Cc-eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHH----hCCCCCCCce
Q 042485 146 GKKLLVLDIDYTLFDHRSTAEN---PL-QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEE----LGVLTNPNYK 216 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~---~~-~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~----l~~~~~~~~~ 216 (332)
.+|+||+|||+||+...-...+ .. ....|++.++|+.|++ ++.++|.|++...++..+++. +++.. .
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~----~ 77 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAE----D 77 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHH----H
Confidence 5899999999999976422211 11 1246899999999997 799999999999999999986 44321 0
Q ss_pred EEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCcccccc
Q 042485 217 ITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVM 270 (332)
Q Consensus 217 ~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~ 270 (332)
+..+ . ...+ ..-..+..+-..+ + .+++.+|+|||++.....
T Consensus 78 f~~~-------~---~~~~-pk~~~i~~~~~~l-~-i~~~~~vfidD~~~d~~~ 118 (320)
T TIGR01686 78 FDAR-------S---INWG-PKSESLRKIAKKL-N-LGTDSFLFIDDNPAERAN 118 (320)
T ss_pred eeEE-------E---EecC-chHHHHHHHHHHh-C-CCcCcEEEECCCHHHHHH
Confidence 1111 0 0011 1111222222222 4 489999999999877654
No 109
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.05 E-value=8.5e-06 Score=76.79 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=68.3
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..||+.+||+.+++ ++.++|.|++...++..+++.++... .+....++ ...+. ...||-+.++..
T Consensus 145 l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~--~~~~~~~v------~~~~~----~~~KP~p~~~~~a~ 212 (286)
T PLN02779 145 LRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPE--RAQGLDVF------AGDDV----PKKKPDPDIYNLAA 212 (286)
T ss_pred chhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccc--ccCceEEE------ecccc----CCCCCCHHHHHHHH
Confidence 56899999999987 79999999999999999887653211 11111111 11111 123776665554
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .+++++|+|+|++..+.....+|+.+..+..
T Consensus 213 ~~~~-~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~ 247 (286)
T PLN02779 213 ETLG-VDPSRCVVVEDSVIGLQAAKAAGMRCIVTKS 247 (286)
T ss_pred HHhC-cChHHEEEEeCCHHhHHHHHHcCCEEEEEcc
Confidence 124 4899999999999999988889988766643
No 110
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.00 E-value=1.9e-05 Score=54.55 Aligned_cols=63 Identities=24% Similarity=0.420 Sum_probs=55.4
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 23 SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 23 ~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
.|....+.++++.|+.+||++|.+.+|++++.|+|.. +|..+.+...+..+++.+|+.|+++.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV---NGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE---CCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 4677788999999999999999999999999999997 67777777777789999999998863
No 111
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.93 E-value=3.1e-05 Score=69.85 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=61.7
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCC---------CCCccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDS---------RGIFDC 239 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~---------~g~~~~ 239 (332)
+..+||+.+||+++++ ++.++|.|++...|++.+|+.+ +..+.-+-....++.. .++...+. .| ..
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~-~~~~~kp~p~~~~~~~~~~--~~ 148 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGE-YITITWPHPCDEHCQNHCG--CC 148 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCC-eeEEeccCCccccccccCC--Cc
Confidence 4589999999999997 6999999999999999999987 4321111001112211 11111000 01 11
Q ss_pred cccccccccCCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 240 KPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 240 KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
|.. .+ ..+ + .++.++|+|-|+..-..+....|+.+
T Consensus 149 K~~-~l-~~~-~-~~~~~~i~iGDs~~Di~aa~~Ag~~~ 183 (219)
T PRK09552 149 KPS-LI-RKL-S-DTNDFHIVIGDSITDLEAAKQADKVF 183 (219)
T ss_pred hHH-HH-HHh-c-cCCCCEEEEeCCHHHHHHHHHCCcce
Confidence 221 11 112 2 26789999999988887777777733
No 112
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.91 E-value=4.5e-05 Score=77.46 Aligned_cols=107 Identities=22% Similarity=0.341 Sum_probs=75.7
Q ss_pred CCcCCcceEEEecCCceEeccCCCC-----CCceecCCcHHHHHHHHHh-CCcEEEEcCCcH------------HHHHHH
Q 042485 142 PSREGKKLLVLDIDYTLFDHRSTAE-----NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSM------------KWVELK 203 (332)
Q Consensus 142 ~~~~~kk~LVLDLD~TLi~~~~~~~-----~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~------------~ya~~~ 203 (332)
...+..|++.||+||||+.+.+... .-+...-||+.+.|+.|.+ +|.|+|+|+... .+++.+
T Consensus 163 ~~~~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~i 242 (526)
T TIGR01663 163 GVKGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAI 242 (526)
T ss_pred CcCccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHH
Confidence 3445779999999999997654210 1234467999999999998 799999999777 468888
Q ss_pred HHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc----CC---CcCCCCcEEEEeCCc
Q 042485 204 MEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ----FP---EFYSSKNTIMFDDLR 265 (332)
Q Consensus 204 l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~----~~---~~~~~~~~iivDD~~ 265 (332)
|+++|+. +..+.. . . ...+.||-+..|.. +. + .+++++++|-|..
T Consensus 243 L~~lgip------fdviia------~---~-~~~~RKP~pGm~~~a~~~~~~~~~-Id~~~S~~VGDaa 294 (526)
T TIGR01663 243 VAKLGVP------FQVFIA------I---G-AGFYRKPLTGMWDHLKEEANDGTE-IQEDDCFFVGDAA 294 (526)
T ss_pred HHHcCCc------eEEEEe------C---C-CCCCCCCCHHHHHHHHHhcCcccC-CCHHHeEEeCCcc
Confidence 8888762 222221 1 1 11345887777765 22 2 3889999999997
No 113
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.89 E-value=6.2e-05 Score=60.98 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=49.4
Q ss_pred eEEEEEE-eCCe-EEEEEecCCCCHHHHHHHHHHHh-------CCCCCCceEeeccCCCcccCcccccccCCCCCCce
Q 042485 15 ELTLTVK-WSGK-EYTVRVCGDDSVAELKRRICELT-------NVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLK 83 (332)
Q Consensus 15 ~i~i~vk-~~g~-~~~i~v~~~~tV~~LK~~I~~~t-------gvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~ 83 (332)
.|.|++. ..|. ..++.+++++||++||+.|...- -..+...|||+ .||+|+|+.+|+++++..|.+
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~---~GriL~d~~tL~~~~~~~~~~ 76 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY---AGRILEDNKTLSDCRLPSGET 76 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE---TTEEE-SSSBTGGGT--TTSE
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEe---CCeecCCcCcHHHhCCCCCCC
Confidence 4667777 4676 67889999999999999999641 23566789998 899999999999999988774
No 114
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.88 E-value=3.1e-05 Score=72.96 Aligned_cols=146 Identities=17% Similarity=0.130 Sum_probs=93.7
Q ss_pred hhhhhhc---ccccCCCcCCcceEEEecCCceEeccCC----CC-CCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHH
Q 042485 130 RRLSQYK---IKLRNPSREGKKLLVLDIDYTLFDHRST----AE-NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWV 200 (332)
Q Consensus 130 ~~v~~~~---~~~l~~~~~~kk~LVLDLD~TLi~~~~~----~~-~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya 200 (332)
++.+.+. .|.+.+....++.+++|+||||...... +. .......|++.++|+.+++ ++.++|.|+.+..++
T Consensus 138 ~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~ 217 (300)
T PHA02530 138 KQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCE 217 (300)
T ss_pred HHHHHhcCCCCceeccCCCCCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhH
Confidence 5555443 3555565556789999999999976432 11 1124579999999999987 699999999999999
Q ss_pred HHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC---CCcC-CCCcEEEEeCCccccccCCCCee
Q 042485 201 ELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF---PEFY-SSKNTIMFDDLRRNFVMNPQNGL 276 (332)
Q Consensus 201 ~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~---~~~~-~~~~~iivDD~~~~~~~~p~Ngi 276 (332)
+..++.|++..... ..+.....+. ..-...+ .-|+-+.++... -+ . +++.+++|||++....+...+|+
T Consensus 218 ~~~l~~l~~~~~~f---~~i~~~~~~~-~~~~~~~--~~kp~p~~~~~~l~~~~-~~~~~~~~~vgD~~~d~~~a~~~Gi 290 (300)
T PHA02530 218 EDTVEWLRQTDIWF---DDLIGRPPDM-HFQREQG--DKRPDDVVKEEIFWEKI-APKYDVLLAVDDRDQVVDMWRRIGL 290 (300)
T ss_pred HHHHHHHHHcCCch---hhhhCCcchh-hhcccCC--CCCCcHHHHHHHHHHHh-ccCceEEEEEcCcHHHHHHHHHhCC
Confidence 99999887742111 1111000000 0000011 114444443320 02 2 56899999999999999999999
Q ss_pred eecccc
Q 042485 277 AIKPFR 282 (332)
Q Consensus 277 ~I~~f~ 282 (332)
.+....
T Consensus 291 ~~i~v~ 296 (300)
T PHA02530 291 ECWQVA 296 (300)
T ss_pred eEEEec
Confidence 876653
No 115
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.87 E-value=1.3e-05 Score=87.83 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=71.6
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..||+.+||++|++ .|.++|.|++...+++.+|+++++... .+..+ ++..+. ...||-+.+|..
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~---~Fd~i------v~~~~~----~~~KP~Pe~~~~a~ 228 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLS---MFDAI------VSADAF----ENLKPAPDIFLAAA 228 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChh---HCCEE------EECccc----ccCCCCHHHHHHHH
Confidence 37999999999987 799999999999999999998877310 11111 111111 123777777654
Q ss_pred -CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 -FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 -~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
.-+ .+++++|+|+|++..+......|+++..+..
T Consensus 229 ~~lg-v~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~ 263 (1057)
T PLN02919 229 KILG-VPTSECVVIEDALAGVQAARAAGMRCIAVTT 263 (1057)
T ss_pred HHcC-cCcccEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 114 3899999999999998888889988776654
No 116
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.80 E-value=5.6e-05 Score=66.82 Aligned_cols=79 Identities=11% Similarity=-0.018 Sum_probs=53.3
Q ss_pred cHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---CC
Q 042485 175 YLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ---FP 250 (332)
Q Consensus 175 ~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~---~~ 250 (332)
+..++|+.|++ .+.++|.|++...+++.+|+.+|+.. +|+. .++.. .. .. |+-+.++.. ..
T Consensus 110 ~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~--------~f~~--~~~~~---~~-~~-KP~p~~~~~~~~~~ 174 (197)
T TIGR01548 110 TPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI--------LFPV--QIWME---DC-PP-KPNPEPLILAAKAL 174 (197)
T ss_pred CHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh--------hCCE--EEeec---CC-CC-CcCHHHHHHHHHHh
Confidence 34899999987 69999999999999999999988741 1111 11111 11 12 665554433 11
Q ss_pred CcCCCCcEEEEeCCccccc
Q 042485 251 EFYSSKNTIMFDDLRRNFV 269 (332)
Q Consensus 251 ~~~~~~~~iivDD~~~~~~ 269 (332)
+ .+++++|+|+|++....
T Consensus 175 ~-~~~~~~i~vGD~~~Di~ 192 (197)
T TIGR01548 175 G-VEACHAAMVGDTVDDII 192 (197)
T ss_pred C-cCcccEEEEeCCHHHHH
Confidence 4 47899999999986543
No 117
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.80 E-value=4.2e-05 Score=64.61 Aligned_cols=80 Identities=14% Similarity=0.036 Sum_probs=53.4
Q ss_pred cCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc--
Q 042485 172 MRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ-- 248 (332)
Q Consensus 172 ~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~-- 248 (332)
..||+.++|+.+.+ ++.++|.|++....+...++.+ +. +.. ..++ .. ... . .||-+..+.+
T Consensus 65 ~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~-~~f---~~i~------~~--~~~--~-~Kp~~~~~~~~~ 128 (154)
T TIGR01549 65 YIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LG-DYF---DLIL------GS--DEF--G-AKPEPEIFLAAL 128 (154)
T ss_pred eccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HH-hcC---cEEE------ec--CCC--C-CCcCHHHHHHHH
Confidence 46999999999976 7999999999999999998875 22 111 1111 11 111 1 3665555443
Q ss_pred --CCCcCCCCcEEEEeCCcccccc
Q 042485 249 --FPEFYSSKNTIMFDDLRRNFVM 270 (332)
Q Consensus 249 --~~~~~~~~~~iivDD~~~~~~~ 270 (332)
+ + .++ ++++|.|++.....
T Consensus 129 ~~~-~-~~~-~~l~iGDs~~Di~a 149 (154)
T TIGR01549 129 ESL-G-LPP-EVLHVGDNLNDIEG 149 (154)
T ss_pred HHc-C-CCC-CEEEEeCCHHHHHH
Confidence 3 3 367 99999999765543
No 118
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.78 E-value=7.1e-05 Score=64.96 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=61.1
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE---EecCCceEEEee--------CCCCCc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITA---LLDHLAMITVQS--------DSRGIF 237 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~---~~d~~~~~~~~~--------~~~g~~ 237 (332)
..++||+.++|+.+++ ++.++|.|++...+++.+++.+++...-. .+.. .++.....++.. ...|
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~-~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g-- 147 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFI-EIYSNPASFDNDGRHIVWPHHCHGCCSCPCG-- 147 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhhee-EEeccCceECCCCcEEEecCCCCccCcCCCC--
Confidence 3589999999999987 69999999999999999998887631100 1110 111111111111 1111
Q ss_pred cccccccccccCCCcCCCCcEEEEeCCccccccCCCCe
Q 042485 238 DCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNG 275 (332)
Q Consensus 238 ~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ng 275 (332)
..| +.++..+...+ ++++|+|+|+...+.+.....
T Consensus 148 ~~K--~~~~~~~~~~~-~~~~i~iGD~~~D~~aa~~~d 182 (188)
T TIGR01489 148 CCK--GKVIHKLSEPK-YQHIIYIGDGVTDVCPAKLSD 182 (188)
T ss_pred CCH--HHHHHHHHhhc-CceEEEECCCcchhchHhcCC
Confidence 234 22333222212 789999999998877665443
No 119
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.77 E-value=0.00013 Score=67.04 Aligned_cols=114 Identities=10% Similarity=0.090 Sum_probs=73.4
Q ss_pred eEEEecCCceEeccCC-------CCC----C--------------ceecCCc--HHHHHHHHHh-CCcEEEEcCC----c
Q 042485 149 LLVLDIDYTLFDHRST-------AEN----P--------------LQLMRPY--LHEFLTAAYA-EYDIMIWSAT----S 196 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~-------~~~----~--------------~~~~RP~--l~eFL~~l~~-~yeivI~Tas----~ 196 (332)
.++|||||||+|+... ... + .....|+ ..+||+++.+ ++.++|-|+. .
T Consensus 65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~ 144 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKT 144 (237)
T ss_pred EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcC
Confidence 8999999999999761 000 0 0123455 9999999998 6999999998 6
Q ss_pred HHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCee
Q 042485 197 MKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGL 276 (332)
Q Consensus 197 ~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi 276 (332)
..+++.+++.+|+.. .+..++.. ... + ..|+-+..|. . ...-+|+|-|+..-+.....+|+
T Consensus 145 ~~~a~~ll~~lGi~~----~f~~i~~~------d~~--~--~~Kp~~~~~l---~--~~~i~i~vGDs~~DI~aAk~AGi 205 (237)
T TIGR01672 145 DTVSKTLAKNFHIPA----MNPVIFAG------DKP--G--QYQYTKTQWI---Q--DKNIRIHYGDSDNDITAAKEAGA 205 (237)
T ss_pred HHHHHHHHHHhCCch----heeEEECC------CCC--C--CCCCCHHHHH---H--hCCCeEEEeCCHHHHHHHHHCCC
Confidence 678999988888831 11222211 000 0 1133222221 1 23338999999988888778888
Q ss_pred eeccc
Q 042485 277 AIKPF 281 (332)
Q Consensus 277 ~I~~f 281 (332)
.....
T Consensus 206 ~~I~V 210 (237)
T TIGR01672 206 RGIRI 210 (237)
T ss_pred CEEEE
Confidence 75554
No 120
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=97.76 E-value=3.3e-05 Score=74.04 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=84.6
Q ss_pred cCCCcCCcceEEEecCCceEeccCCC----------------------C---------------C----------Cceec
Q 042485 140 RNPSREGKKLLVLDIDYTLFDHRSTA----------------------E---------------N----------PLQLM 172 (332)
Q Consensus 140 l~~~~~~kk~LVLDLD~TLi~~~~~~----------------------~---------------~----------~~~~~ 172 (332)
-++.+..++++||||||||+...... + + ..+..
T Consensus 103 ~~~~~~~~~LvvfDmDGTLI~~e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v~~~l~l 182 (322)
T PRK11133 103 KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLKGADANILQQVRENLPL 182 (322)
T ss_pred CcccccCCCEEEEECCCCCcchHHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 35566788999999999999543200 0 0 01347
Q ss_pred CCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCC---CCCccccc--ccccc
Q 042485 173 RPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDS---RGIFDCKP--LGLIW 246 (332)
Q Consensus 173 RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~---~g~~~~Kd--L~~i~ 246 (332)
+||+.+||+.|++ .+.++|.|++...+++.+++++++..-....+.+ .+ ..++....+ .+ .-|. +..+-
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei-~d--g~ltg~v~g~iv~~--k~K~~~L~~la 257 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEI-MD--GKLTGNVLGDIVDA--QYKADTLTRLA 257 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEE-EC--CEEEeEecCccCCc--ccHHHHHHHHH
Confidence 8999999999998 6999999999999999999888773111111111 11 122211111 11 1122 22222
Q ss_pred ccCCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 247 DQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 247 ~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
.++ + .++++||+|-|...-..+-...|+.|.
T Consensus 258 ~~l-g-i~~~qtIaVGDg~NDl~m~~~AGlgiA 288 (322)
T PRK11133 258 QEY-E-IPLAQTVAIGDGANDLPMIKAAGLGIA 288 (322)
T ss_pred HHc-C-CChhhEEEEECCHHHHHHHHHCCCeEE
Confidence 222 3 489999999999988887777777664
No 121
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.75 E-value=3.2e-05 Score=68.51 Aligned_cols=99 Identities=21% Similarity=0.138 Sum_probs=59.2
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCC
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPE 251 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~ 251 (332)
..||+.+||+.+++.+.++|.|++...+++.+++++++.. .+.....++.+..++... ......|. ..+ .++..
T Consensus 69 ~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~--~f~~~~~~~~~~~i~~~~--~~~p~~k~-~~l-~~~~~ 142 (205)
T PRK13582 69 PLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT--LFCHSLEVDEDGMITGYD--LRQPDGKR-QAV-KALKS 142 (205)
T ss_pred CCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch--hhcceEEECCCCeEECcc--ccccchHH-HHH-HHHHH
Confidence 5799999999999889999999999999999999988731 111111122111111000 00001121 111 11112
Q ss_pred cCCCCcEEEEeCCccccccCCCCeeee
Q 042485 252 FYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 252 ~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
..+++++|-|+..-..+...+|+.|
T Consensus 143 --~~~~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 143 --LGYRVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred --hCCeEEEEeCCHHHHHHHHhCCCCE
Confidence 4578999999988766655555544
No 122
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.73 E-value=5.3e-05 Score=65.85 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=76.3
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCc-HHHHHHHHHHhCCCCCCCceEEEEec
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATS-MKWVELKMEELGVLTNPNYKITALLD 222 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~-~~ya~~~l~~l~~~~~~~~~~~~~~d 222 (332)
.+-+++|+|+||||..... ....|++.++|+.|++ ++.++|.|+++ ...+..+++.+++. .+.
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~--------~~~- 87 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP--------VLP- 87 (170)
T ss_pred CCCCEEEEecCCccccCCC------CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE--------EEc-
Confidence 4788999999999996632 3567999999999997 59999999998 67777766655542 110
Q ss_pred CCceEEEeeCCCCCcccccccccccc---CCCcCCCCcEEEEeCCc-cccccCCCCeeeeccc
Q 042485 223 HLAMITVQSDSRGIFDCKPLGLIWDQ---FPEFYSSKNTIMFDDLR-RNFVMNPQNGLAIKPF 281 (332)
Q Consensus 223 ~~~~~~~~~~~~g~~~~KdL~~i~~~---~~~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~~f 281 (332)
+ ..||-+.++.. .-+ .+++++++|+|+. ........+|+...-+
T Consensus 88 ------------~--~~KP~p~~~~~~l~~~~-~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v 135 (170)
T TIGR01668 88 ------------H--AVKPPGCAFRRAHPEMG-LTSEQVAVVGDRLFTDVMGGNRNGSYTILV 135 (170)
T ss_pred ------------C--CCCCChHHHHHHHHHcC-CCHHHEEEECCcchHHHHHHHHcCCeEEEE
Confidence 0 12554444443 113 3789999999998 4677777778765544
No 123
>PTZ00445 p36-lilke protein; Provisional
Probab=97.70 E-value=5e-05 Score=67.89 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=83.8
Q ss_pred CCcceEEEecCCceEeccC-CCCC-------CceecCCcHHHHHHHHHh-CCcEEEEcCCcHHH---------------H
Q 042485 145 EGKKLLVLDIDYTLFDHRS-TAEN-------PLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKW---------------V 200 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~-~~~~-------~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~y---------------a 200 (332)
.|.+++++|||.|||..-+ ++.. .....+|.+.++++.|.+ ++.|+|.|=+.... +
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li 120 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMV 120 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHH
Confidence 4889999999999996322 1211 223489999999999997 79999999888754 3
Q ss_pred HHHHHHhCCCCCCCceEEEE-------ecCCceEEEeeCCCCCccccccccc--c--cc---CCCcCCCCcEEEEeCCcc
Q 042485 201 ELKMEELGVLTNPNYKITAL-------LDHLAMITVQSDSRGIFDCKPLGLI--W--DQ---FPEFYSSKNTIMFDDLRR 266 (332)
Q Consensus 201 ~~~l~~l~~~~~~~~~~~~~-------~d~~~~~~~~~~~~g~~~~KdL~~i--~--~~---~~~~~~~~~~iivDD~~~ 266 (332)
+..|+.= +-...+..+ |+...+. ......||-+.+ | .. --+ ..++.+|+|||.+.
T Consensus 121 ~~~lk~s----~~~~~i~~~~~yyp~~w~~p~~y------~~~gl~KPdp~iK~yHle~ll~~~g-l~peE~LFIDD~~~ 189 (219)
T PTZ00445 121 EAALKKS----KCDFKIKKVYAYYPKFWQEPSDY------RPLGLDAPMPLDKSYHLKQVCSDFN-VNPDEILFIDDDMN 189 (219)
T ss_pred HHHHHhc----CccceeeeeeeeCCcccCChhhh------hhhcccCCCccchHHHHHHHHHHcC-CCHHHeEeecCCHH
Confidence 4444321 112222221 2211110 011345777777 5 32 124 48999999999999
Q ss_pred ccccCCCCeeeeccccC
Q 042485 267 NFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 267 ~~~~~p~Ngi~I~~f~~ 283 (332)
|+.....-|+...-|.+
T Consensus 190 NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 190 NCKNALKEGYIALHVTG 206 (219)
T ss_pred HHHHHHHCCCEEEEcCC
Confidence 99999888988777765
No 124
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=97.70 E-value=8.5e-06 Score=70.38 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=52.7
Q ss_pred cCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccC--
Q 042485 172 MRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQF-- 249 (332)
Q Consensus 172 ~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~-- 249 (332)
..||+.++|+ .++|.|+++..+++.+++++++. .+|+. +++..+ .| ..||-+.+|...
T Consensus 91 ~~~g~~~~L~------~~~i~Tn~~~~~~~~~l~~~~l~--------~~fd~--v~~~~~--~~--~~KP~p~~f~~~~~ 150 (175)
T TIGR01493 91 PWPDSAAALA------RVAILSNASHWAFDQFAQQAGLP--------WYFDR--AFSVDT--VR--AYKPDPVVYELVFD 150 (175)
T ss_pred CCCchHHHHH------HHhhhhCCCHHHHHHHHHHCCCH--------HHHhh--hccHhh--cC--CCCCCHHHHHHHHH
Confidence 5788888887 37899999999999999988763 12221 222211 12 348888777651
Q ss_pred -CCcCCCCcEEEEeCCccccc
Q 042485 250 -PEFYSSKNTIMFDDLRRNFV 269 (332)
Q Consensus 250 -~~~~~~~~~iivDD~~~~~~ 269 (332)
-+ .+++++++|+|++....
T Consensus 151 ~~~-~~p~~~l~vgD~~~Di~ 170 (175)
T TIGR01493 151 TVG-LPPDRVLMVAAHQWDLI 170 (175)
T ss_pred HHC-CCHHHeEeEecChhhHH
Confidence 24 48999999999976543
No 125
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.65 E-value=5.6e-05 Score=68.29 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=65.9
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccc----
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLI---- 245 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i---- 245 (332)
..-||+.+.|..+++ +|.++|.|+.....++.+++++|+.. +|+- .+. ..+....||-+..
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~--------~F~~--i~g----~~~~~~~KP~P~~l~~~ 154 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD--------YFDV--IVG----GDDVPPPKPDPEPLLLL 154 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc--------ccce--EEc----CCCCCCCCcCHHHHHHH
Confidence 357899999999998 79999999999999999999988852 1110 111 0111223543332
Q ss_pred cccCCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 246 WDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 246 ~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
..++.. +++++|+|=|+..-..+....|++...+
T Consensus 155 ~~~~~~--~~~~~l~VGDs~~Di~aA~~Ag~~~v~v 188 (220)
T COG0546 155 LEKLGL--DPEEALMVGDSLNDILAAKAAGVPAVGV 188 (220)
T ss_pred HHHhCC--ChhheEEECCCHHHHHHHHHcCCCEEEE
Confidence 222322 5669999999999999988888664433
No 126
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=2.7e-05 Score=55.82 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=56.7
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
+.+.+. .-|++..|...+++||+|||..|+++||-.+++..|- | .+.+.+|.-+|+++.+++|..+-|
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~--k-~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLK--K-WYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHH--h-hhhhhhcccceeeEEeccCccEEE
Confidence 445555 4588899999999999999999999999999987764 2 456788999999999999987654
No 127
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.60 E-value=0.00034 Score=67.85 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=81.4
Q ss_pred CcceEEEecCCceEeccCC----CCCCceecCCcHHHHHHHHHh-CCcEEEEcCC---------------cHHHHHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRST----AENPLQLMRPYLHEFLTAAYA-EYDIMIWSAT---------------SMKWVELKME 205 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~----~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas---------------~~~ya~~~l~ 205 (332)
.+++|+||-||||+..... .........||+.+||++|++ +|.++|.|+. ...++..+++
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~ 80 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFE 80 (354)
T ss_pred CCcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHH
Confidence 4789999999999987531 112347789999999999987 6999999995 2456666777
Q ss_pred HhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---CCCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 206 ELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ---FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 206 ~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~---~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
.+++. +..++ +............||-+.++.. ..+ .+++++++|-|+..-+.....+|++..-.
T Consensus 81 ~~gl~------fd~i~-----i~~~~~sd~~~~rKP~p~~l~~a~~~l~-v~~~~svmIGDs~sDi~aAk~aGi~~I~v 147 (354)
T PRK05446 81 SQGIK------FDEVL-----ICPHFPEDNCSCRKPKTGLVEEYLAEGA-IDLANSYVIGDRETDVQLAENMGIKGIRY 147 (354)
T ss_pred HcCCc------eeeEE-----EeCCcCcccCCCCCCCHHHHHHHHHHcC-CCcccEEEEcCCHHHHHHHHHCCCeEEEE
Confidence 66652 11110 0000000011123776655543 123 48999999999987777777888775544
No 128
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.52 E-value=5.7e-05 Score=69.05 Aligned_cols=86 Identities=10% Similarity=0.155 Sum_probs=56.5
Q ss_pred CcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---CC
Q 042485 174 PYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ---FP 250 (332)
Q Consensus 174 P~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~---~~ 250 (332)
||+.++|+.|++.|.++|.|+++.. ++.+|+. .+|+. +++. ...+ ..||-+.++.. .-
T Consensus 116 ~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~--------~~fd~--i~~~--~~~~--~~KP~p~~~~~a~~~~ 176 (238)
T PRK10748 116 QATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG--------DYFEF--VLRA--GPHG--RSKPFSDMYHLAAEKL 176 (238)
T ss_pred ccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH--------Hhhce--eEec--ccCC--cCCCcHHHHHHHHHHc
Confidence 8999999999988999999998764 2444442 11221 1111 1122 24887777754 12
Q ss_pred CcCCCCcEEEEeCCc-cccccCCCCeeeec
Q 042485 251 EFYSSKNTIMFDDLR-RNFVMNPQNGLAIK 279 (332)
Q Consensus 251 ~~~~~~~~iivDD~~-~~~~~~p~Ngi~I~ 279 (332)
+ .+++++++|-|++ .-......+|+...
T Consensus 177 ~-~~~~~~~~VGD~~~~Di~~A~~aG~~~i 205 (238)
T PRK10748 177 N-VPIGEILHVGDDLTTDVAGAIRCGMQAC 205 (238)
T ss_pred C-CChhHEEEEcCCcHHHHHHHHHCCCeEE
Confidence 4 4899999999995 66767777887654
No 129
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.49 E-value=0.00092 Score=62.20 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=50.4
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.+..+|||||.|||.... .-...-|.+.+.|..+++ ++-+++||.|..+++..-|+++++.
T Consensus 121 ~phVIVfDlD~TLItd~~----~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~ 182 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEG----DVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLE 182 (297)
T ss_pred CCcEEEEECCCcccccCC----ccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCc
Confidence 455999999999996542 223455899999999999 5688999999999999999999774
No 130
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.49 E-value=0.00066 Score=50.25 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=62.5
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCc--ccCcccccccCCCCCCceEEEEecC
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNK--LADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk--~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|.|+|+ |++....+.|++.++|..+|++|...-|++- .|+|-+-..||+ ++.+..+|++|||=....|.|+-|-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 468999 8888899999999999999999999999987 899987332554 4678899999999888888888654
No 131
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.45 E-value=0.00011 Score=62.86 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=71.2
Q ss_pred ceEEEecCCceEeccC---CC--CCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEe
Q 042485 148 KLLVLDIDYTLFDHRS---TA--ENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALL 221 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~---~~--~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~ 221 (332)
++++||+||||++..- .. ....+..+|+. -+++|++ ++.++|.|+.....++.+++++|+. .++
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~--------~~~ 71 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT--------HLY 71 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCCcEEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC--------EEE
Confidence 6899999999997422 11 11234566665 6888887 7999999999999999999988774 122
Q ss_pred cCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 222 DHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 222 d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
+. ... ....+..+-..+ + .+++++++|-|+..-..+-...|+.+
T Consensus 72 ~~---------~~~--k~~~~~~~~~~~-~-~~~~~~~~vGDs~~D~~~~~~ag~~~ 115 (154)
T TIGR01670 72 QG---------QSN--KLIAFSDILEKL-A-LAPENVAYIGDDLIDWPVMEKVGLSV 115 (154)
T ss_pred ec---------ccc--hHHHHHHHHHHc-C-CCHHHEEEECCCHHHHHHHHHCCCeE
Confidence 11 001 001122221112 3 38899999999988777777777753
No 132
>PRK08238 hypothetical protein; Validated
Probab=97.37 E-value=0.00042 Score=69.92 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=52.3
Q ss_pred CcceEEEecCCceEeccCCCC--------------------------------------CCceecCCcHHHHHHHHHh-C
Q 042485 146 GKKLLVLDIDYTLFDHRSTAE--------------------------------------NPLQLMRPYLHEFLTAAYA-E 186 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~--------------------------------------~~~~~~RP~l~eFL~~l~~-~ 186 (332)
...-||+||||||+++..-.+ ......+|++.++|+++++ +
T Consensus 9 ~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G 88 (479)
T PRK08238 9 RDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAG 88 (479)
T ss_pred CCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCC
Confidence 345789999999999876211 0112478999999999987 7
Q ss_pred CcEEEEcCCcHHHHHHHHHHhCC
Q 042485 187 YDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 187 yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
+.++|-|++...+++.+++++|+
T Consensus 89 ~~v~LaTas~~~~a~~i~~~lGl 111 (479)
T PRK08238 89 RKLVLATASDERLAQAVAAHLGL 111 (479)
T ss_pred CEEEEEeCCCHHHHHHHHHHcCC
Confidence 99999999999999999998876
No 133
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.36 E-value=0.00054 Score=51.93 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=49.6
Q ss_pred eEEEEEEeC-CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCce----EeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 15 ELTLTVKWS-GKEYTVRVCGDDSVAELKRRICELTNVLPKRQK----LLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 15 ~i~i~vk~~-g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~Qk----Ll~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
.+.|+|.+. |..+++.++.+.+|++|...|.+..+.+..... .-..+.+|..++++.+|+++||.+|+.++|
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 467888886 489999999999999999999999887554432 211213788899999999999999999986
No 134
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.36 E-value=0.00037 Score=53.97 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=52.3
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCC
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLK 79 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~ 79 (332)
+-+.|+-.+..|-++..++.||-+||.+++..+.=|+..|+|.-+- .-.+++|..+|+++|+.
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd-~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMD-TEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecC-HHHHhhccchhhhcccc
Confidence 4567776667777899999999999999999999999999997432 22467899999999874
No 135
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.34 E-value=0.0012 Score=56.83 Aligned_cols=103 Identities=22% Similarity=0.268 Sum_probs=63.6
Q ss_pred ceEEEecCCceEeccCCC-----CCCceecCCcHHHHHHHHHh-CCcEEEEcCCc---H-----------HHHHHHHHHh
Q 042485 148 KLLVLDIDYTLFDHRSTA-----ENPLQLMRPYLHEFLTAAYA-EYDIMIWSATS---M-----------KWVELKMEEL 207 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~-----~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~---~-----------~ya~~~l~~l 207 (332)
|++.|||||||+...+.. ..-+...-|++.+-|.++.+ .|.|||+|+.. . ..++.+++.+
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l 80 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL 80 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc
Confidence 678999999999886632 13357788899999999998 79999999862 1 2334455555
Q ss_pred CCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCc------CCCCcEEEEeCCcc
Q 042485 208 GVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEF------YSSKNTIMFDDLRR 266 (332)
Q Consensus 208 ~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~------~~~~~~iivDD~~~ 266 (332)
++. +.++.. .... .+.||-.-+|..+... .+.++.++|=|.+.
T Consensus 81 ~ip------~~~~~a---------~~~d-~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaag 129 (159)
T PF08645_consen 81 GIP------IQVYAA---------PHKD-PCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAG 129 (159)
T ss_dssp TS-------EEEEEC---------GCSS-TTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCH
T ss_pred CCc------eEEEec---------CCCC-CCCCCchhHHHHHHHhccccccccccceEEEeccCC
Confidence 442 222211 1122 4668888888763222 26788999988643
No 136
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00025 Score=63.99 Aligned_cols=104 Identities=19% Similarity=0.157 Sum_probs=64.5
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEee---CCCCCccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQS---DSRGIFDCKPLGLI 245 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~---~~~g~~~~KdL~~i 245 (332)
..++||..+.++++++ +++++|.|++...+++++.+.||+...-...+ ..+. ..++-.. .-++....+-|..+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l--~~~d-G~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANEL--EIDD-GKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEE--EEeC-CEEeceeeeeecCcchHHHHHHHH
Confidence 5789999999999998 69999999999999999999998853211111 1111 1222100 00111112234444
Q ss_pred cccCCCcCCCCcEEEEeCCccccccC--CCCeeee
Q 042485 246 WDQFPEFYSSKNTIMFDDLRRNFVMN--PQNGLAI 278 (332)
Q Consensus 246 ~~~~~~~~~~~~~iivDD~~~~~~~~--p~Ngi~I 278 (332)
...+ + .++++++.+=|+..-..|- -++++.+
T Consensus 153 ~~~~-g-~~~~~~~a~gDs~nDlpml~~ag~~ia~ 185 (212)
T COG0560 153 AAEL-G-IPLEETVAYGDSANDLPMLEAAGLPIAV 185 (212)
T ss_pred HHHc-C-CCHHHeEEEcCchhhHHHHHhCCCCeEe
Confidence 3333 3 3788999999997766653 3444433
No 137
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=97.14 E-value=0.00031 Score=62.94 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=37.8
Q ss_pred eecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 170 QLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
+..+||..+||+.+++.+.++|-|++...+++++++++|+.
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~ 107 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFP 107 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCc
Confidence 35799999999999998899999999999999999999874
No 138
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.12 E-value=0.00058 Score=58.70 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=36.3
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
..+||+.++|+.+.+ ++.++|.|++...|++.+++.+|+.
T Consensus 73 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 478999999999987 6999999999999999999988774
No 139
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=97.06 E-value=0.00054 Score=62.18 Aligned_cols=101 Identities=12% Similarity=0.164 Sum_probs=69.6
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
...-||+.++++.|.. .-.+++||++....++.++..++-+. ..|++.-+.+-.+...| |+-+.+|..
T Consensus 91 ~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~-------~~f~~~v~~d~~~v~~g----KP~Pdi~l~ 159 (222)
T KOG2914|consen 91 SILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIF-------KNFSHVVLGDDPEVKNG----KPDPDIYLK 159 (222)
T ss_pred cccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHH-------HhcCCCeecCCccccCC----CCCchHHHH
Confidence 4688999999999998 58999999999999999887664110 11111000000012233 888777765
Q ss_pred ----CCCcCCC-CcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 ----FPEFYSS-KNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 ----~~~~~~~-~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
+.. ++ +.+++++|++....+...-|.++.....
T Consensus 160 A~~~l~~--~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 160 AAKRLGV--PPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred HHHhcCC--CCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 333 55 9999999999999888777777666643
No 140
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.04 E-value=0.0017 Score=55.96 Aligned_cols=123 Identities=21% Similarity=0.295 Sum_probs=84.0
Q ss_pred cCCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEec
Q 042485 144 REGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLD 222 (332)
Q Consensus 144 ~~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d 222 (332)
+.|.+++++|||+|||--.. -..-|-+.+.+..+.+ ...++|.|+.++.-+......||+. |++.
T Consensus 25 ~~Gikgvi~DlDNTLv~wd~------~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~--------fi~~ 90 (175)
T COG2179 25 AHGIKGVILDLDNTLVPWDN------PDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP--------FIYR 90 (175)
T ss_pred HcCCcEEEEeccCceecccC------CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc--------eeec
Confidence 35999999999999995432 2356888999999998 5999999999999998888888774 3321
Q ss_pred CCceEEEeeCCCCCcccccccccccc---CCCcCCCCcEEEEeCCc--cccccCCCCe---eeeccccCCcCCCCCchHH
Q 042485 223 HLAMITVQSDSRGIFDCKPLGLIWDQ---FPEFYSSKNTIMFDDLR--RNFVMNPQNG---LAIKPFRKAHANRDSDQEL 294 (332)
Q Consensus 223 ~~~~~~~~~~~~g~~~~KdL~~i~~~---~~~~~~~~~~iivDD~~--~~~~~~p~Ng---i~I~~f~~~~~~~~~D~~L 294 (332)
.-||.+.-+++ --+ +++++|++|=|.- +.+..| ..| |.|.|-.. .|.--
T Consensus 91 ---------------A~KP~~~~fr~Al~~m~-l~~~~vvmVGDqL~TDVlggn-r~G~~tIlV~Pl~~------~d~~~ 147 (175)
T COG2179 91 ---------------AKKPFGRAFRRALKEMN-LPPEEVVMVGDQLFTDVLGGN-RAGMRTILVEPLVA------PDGWI 147 (175)
T ss_pred ---------------ccCccHHHHHHHHHHcC-CChhHEEEEcchhhhhhhccc-ccCcEEEEEEEecc------ccchh
Confidence 11444333332 014 6999999999984 333334 344 66777754 44444
Q ss_pred HHHHHHHHh
Q 042485 295 VKLTQYLLA 303 (332)
Q Consensus 295 ~~L~~~L~~ 303 (332)
-.+.+.+|.
T Consensus 148 t~~nR~~Er 156 (175)
T COG2179 148 TKINRWRER 156 (175)
T ss_pred hhhhHHHHH
Confidence 455555554
No 141
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0015 Score=61.08 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=49.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccC--CCCCCceEEEE
Q 042485 26 EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQL--PLKSSLKMTMI 87 (332)
Q Consensus 26 ~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~--~i~~g~~l~l~ 87 (332)
.++|+|+.+.+|.+||+.++.++|||+++-++|| .||.|.++.++..+ +.++-..||+.
T Consensus 15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viF---aGKeLs~~ttv~~cDL~qqs~~hi~~l 75 (446)
T KOG0006|consen 15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIF---AGKELSNDTTVQNCDLSQQSATHIMLL 75 (446)
T ss_pred ceeEEEecCCCHHHHHHHHHHhhCCChhheEEEE---eccccccCceeecccccccchhhhhcc
Confidence 3568899999999999999999999999999998 89999999999954 44444445544
No 142
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=96.90 E-value=0.00092 Score=58.95 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=58.7
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEee---CCCCCcccccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQS---DSRGIFDCKPLGLIW 246 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~---~~~g~~~~KdL~~i~ 246 (332)
..+|++.++|+.+.+ ++.++|-|++...+++.+++.+|+..--..++ ..+.+..++... ..+|....+.+..+.
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l--~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRL--EESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecce--EEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 369999999999987 69999999999999999999888741000011 111111222100 011211122243333
Q ss_pred ccCCCcCCCCcEEEEeCCccccccCC
Q 042485 247 DQFPEFYSSKNTIMFDDLRRNFVMNP 272 (332)
Q Consensus 247 ~~~~~~~~~~~~iivDD~~~~~~~~p 272 (332)
... + .++++++++-|++.-..+-.
T Consensus 165 ~~~-~-~~~~~~~~~gDs~~D~~~~~ 188 (202)
T TIGR01490 165 AEE-Q-IDLKDSYAYGDSISDLPLLS 188 (202)
T ss_pred HHc-C-CCHHHcEeeeCCcccHHHHH
Confidence 322 3 47789999999986665543
No 143
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=96.82 E-value=0.001 Score=58.43 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=68.1
Q ss_pred CcceEEEecCCceEeccC--CCCC--Cc-eecCCcHHHHHHHHH-hCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE
Q 042485 146 GKKLLVLDIDYTLFDHRS--TAEN--PL-QLMRPYLHEFLTAAY-AEYDIMIWSATSMKWVELKMEELGVLTNPNYKITA 219 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~--~~~~--~~-~~~RP~l~eFL~~l~-~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~ 219 (332)
+.+++++|+||||++..- ...+ .. ...|.+ .=++.+. +.+.++|-|+.....+..+++++++. .
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~--~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~--------~ 89 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDG--YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT--------H 89 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccch--HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc--------e
Confidence 689999999999997621 0001 11 111221 1234444 47999999999999999999988763 1
Q ss_pred EecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 220 LLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 220 ~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
+|+. ... ....+..+..++ + .+++++++|-|+..-..+....|+.+.
T Consensus 90 ~f~g---------~~~--k~~~l~~~~~~~-g-l~~~ev~~VGDs~~D~~~a~~aG~~~~ 136 (183)
T PRK09484 90 LYQG---------QSN--KLIAFSDLLEKL-A-IAPEQVAYIGDDLIDWPVMEKVGLSVA 136 (183)
T ss_pred eecC---------CCc--HHHHHHHHHHHh-C-CCHHHEEEECCCHHHHHHHHHCCCeEe
Confidence 2211 011 001122222222 4 378999999999877777666777654
No 144
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.80 E-value=0.003 Score=46.11 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=46.4
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 20 VKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 20 vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
|.++++.+.|.+++++|+.++-++.....|+.+++=.|.+ ++|.++-+.++.-.||.+|+++.|
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h---~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKH---NNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEE---TTEEESSS-BHHHH---SS-EEEE
T ss_pred CccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEE---CCEEeccccceeecCCCCCCEEeC
Confidence 5678899999999999999999999999999999777777 889998889999999999999875
No 145
>PRK11590 hypothetical protein; Provisional
Probab=96.69 E-value=0.002 Score=57.74 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=33.9
Q ss_pred cCCcHHHHH-HHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 172 MRPYLHEFL-TAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 172 ~RP~l~eFL-~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.+||+.+.| +.+.+ ++.++|-|++...|++++++.+++
T Consensus 96 ~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~ 135 (211)
T PRK11590 96 AFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPW 135 (211)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccc
Confidence 479999999 56775 899999999999999999998875
No 146
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=96.63 E-value=0.0049 Score=56.59 Aligned_cols=113 Identities=8% Similarity=0.106 Sum_probs=68.0
Q ss_pred cceEEEecCCceEeccCC----CC-------CC----------------ceecCCcHHHHHHHHHh-CCcEEEEcCC---
Q 042485 147 KKLLVLDIDYTLFDHRST----AE-------NP----------------LQLMRPYLHEFLTAAYA-EYDIMIWSAT--- 195 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~----~~-------~~----------------~~~~RP~l~eFL~~l~~-~yeivI~Tas--- 195 (332)
+..++||+|||++|++.. .. .+ .....||+.+||+.+.+ .++|++-|+-
T Consensus 63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~ 142 (237)
T PRK11009 63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTAT 142 (237)
T ss_pred CcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 348999999999986431 00 01 12234459999999965 7999999984
Q ss_pred -cHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCC
Q 042485 196 -SMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQN 274 (332)
Q Consensus 196 -~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~N 274 (332)
...+++.+++.+|+-.+..+ ..++.. .+ ..|+-+.-+- . ...-+|+|-|+..-+......
T Consensus 143 k~~~t~~~Llk~~gip~~~~f--~vil~g------d~------~~K~~K~~~l---~--~~~i~I~IGDs~~Di~aA~~A 203 (237)
T PRK11009 143 KTETVSKTLADDFHIPADNMN--PVIFAG------DK------PGQYTKTQWL---K--KKNIRIFYGDSDNDITAAREA 203 (237)
T ss_pred ccHHHHHHHHHHcCCCcccce--eEEEcC------CC------CCCCCHHHHH---H--hcCCeEEEcCCHHHHHHHHHc
Confidence 45577777776777211111 111111 00 0122111121 1 233499999998888887777
Q ss_pred eeee
Q 042485 275 GLAI 278 (332)
Q Consensus 275 gi~I 278 (332)
|+..
T Consensus 204 Gi~~ 207 (237)
T PRK11009 204 GARG 207 (237)
T ss_pred CCcE
Confidence 7764
No 147
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.61 E-value=0.0059 Score=60.59 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=75.2
Q ss_pred CCcceEEEecCCceEeccCCCCCC-ceec--------CCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENP-LQLM--------RPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPN 214 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~-~~~~--------RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~ 214 (332)
+.+|+||||||+||+-.--+..+. .+.+ ---+++|...+++ ++=++|.|-..++-|..+.+. +|.
T Consensus 220 ~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~k-----hp~ 294 (574)
T COG3882 220 KSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRK-----HPD 294 (574)
T ss_pred cccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhh-----CCC
Confidence 368999999999999543222111 0111 1136677777877 788999999999999887652 443
Q ss_pred ceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCe-eeecccc
Q 042485 215 YKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNG-LAIKPFR 282 (332)
Q Consensus 215 ~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ng-i~I~~f~ 282 (332)
+++... +|++...... .-.-+++.|-.++ + ...+-.+++||+|.....-..++ +.|.+|-
T Consensus 295 ----MiLkee-dfa~~~iNW~-~K~eNirkIAkkl-N-lg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~~ 355 (574)
T COG3882 295 ----MILKEE-DFAVFQINWD-PKAENIRKIAKKL-N-LGLDSMVFIDDNPAERELVKRELPVSVIEFP 355 (574)
T ss_pred ----eEeeHh-hhhhheecCC-cchhhHHHHHHHh-C-CCccceEEecCCHHHHHHHHhcCceeeccCC
Confidence 333111 1222111111 1124466665554 4 38999999999998876544344 5666663
No 148
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=96.61 E-value=0.016 Score=54.32 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=61.7
Q ss_pred ceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceE-EEE--ecCCceEEEeeCCCCC---ccccc
Q 042485 169 LQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKI-TAL--LDHLAMITVQSDSRGI---FDCKP 241 (332)
Q Consensus 169 ~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~-~~~--~d~~~~~~~~~~~~g~---~~~Kd 241 (332)
.+.+|||+.+|++.|.+ +..++|+|++...+++.+|+++|+. +++..+ +.. ++.....+- ..+. ...|.
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~-~~~~~IvSN~L~f~~dGvltG---~~~P~i~~~~K~ 194 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVY-HPNVKVVSNFMDFDEDGVLKG---FKGPLIHTFNKN 194 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCC-CcCceEEeeeEEECCCCeEeC---CCCCcccccccH
Confidence 35689999999999987 6999999999999999999998875 344333 222 222222211 1111 11232
Q ss_pred cccc--c-ccCCCcCCCCcEEEEeCCcccccc
Q 042485 242 LGLI--W-DQFPEFYSSKNTIMFDDLRRNFVM 270 (332)
Q Consensus 242 L~~i--~-~~~~~~~~~~~~iivDD~~~~~~~ 270 (332)
-..+ + ..+....++++||+|-|+..-..|
T Consensus 195 ~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~m 226 (277)
T TIGR01544 195 HDVALRNTEYFNQLKDRSNIILLGDSQGDLRM 226 (277)
T ss_pred HHHHHHHHHHhCccCCcceEEEECcChhhhhH
Confidence 1111 1 112211378999999999876665
No 149
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=96.58 E-value=0.0043 Score=49.24 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=39.5
Q ss_pred EEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHH----HHHHHHHHhCCCC
Q 042485 150 LVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMK----WVELKMEELGVLT 211 (332)
Q Consensus 150 LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~----ya~~~l~~l~~~~ 211 (332)
++||+||||++.. ..=||..|||+++.+ +..+++.|+++.+ |++. |+.+|+..
T Consensus 1 ~l~D~dGvl~~g~--------~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~-L~~~Gi~~ 58 (101)
T PF13344_consen 1 FLFDLDGVLYNGN--------EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKK-LKKLGIPV 58 (101)
T ss_dssp EEEESTTTSEETT--------EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHH-HHHTTTT-
T ss_pred CEEeCccEeEeCC--------CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHH-HHhcCcCC
Confidence 5899999999753 257999999999998 6999999999844 4433 46667753
No 150
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0088 Score=52.95 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=61.6
Q ss_pred EEEEEEeCCeE--EEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccC----CCcccCcccccccCCCCCCceEEEEec
Q 042485 16 LTLTVKWSGKE--YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKI----GNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 16 i~i~vk~~g~~--~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~----~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
++|.|..+-.. ....++.+.||.+||.+|+-+||.+++.++|--.+. .|.+-+++..|..|+..+|..|+++-+
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 56677755444 445789999999999999999999999999963221 234456778999999999999999976
Q ss_pred CCCcc
Q 042485 90 VEDEI 94 (332)
Q Consensus 90 ~~~~~ 94 (332)
....+
T Consensus 82 ~~~~~ 86 (234)
T KOG3206|consen 82 NAQSI 86 (234)
T ss_pred Ccccc
Confidence 66544
No 151
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=96.53 E-value=0.0049 Score=56.88 Aligned_cols=58 Identities=29% Similarity=0.330 Sum_probs=51.1
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
..+++++||||||++.... ..|...+.|+.+.+ ++.++|.|.-+...+..+++.|++.
T Consensus 2 ~~kli~~DlDGTLl~~~~~-------i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~ 60 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT-------ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLD 60 (264)
T ss_pred CeeEEEEcCCCCccCCCCc-------cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 3689999999999987541 88999999998865 8999999999999999999999875
No 152
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.49 E-value=0.008 Score=56.14 Aligned_cols=65 Identities=23% Similarity=0.224 Sum_probs=48.0
Q ss_pred CCcceEEEecCCceEeccCC-------CC------------CCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHH---
Q 042485 145 EGKKLLVLDIDYTLFDHRST-------AE------------NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVE--- 201 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~-------~~------------~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~--- 201 (332)
..++.+|||+|||+++.... .. ......-||+.+||+++.+ +..++|.|+....+.+
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~ 152 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATL 152 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHH
Confidence 46789999999999987621 00 1123467999999999987 6899999998766554
Q ss_pred HHHHHhCC
Q 042485 202 LKMEELGV 209 (332)
Q Consensus 202 ~~l~~l~~ 209 (332)
..|+.+|+
T Consensus 153 ~~Lkk~Gi 160 (266)
T TIGR01533 153 KNLKRFGF 160 (266)
T ss_pred HHHHHcCc
Confidence 55565566
No 153
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.45 E-value=0.0095 Score=51.79 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=46.5
Q ss_pred cCCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCC-c--EEEEcCCc-------HHHHHHHHHHhCC
Q 042485 144 REGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEY-D--IMIWSATS-------MKWVELKMEELGV 209 (332)
Q Consensus 144 ~~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~y-e--ivI~Tas~-------~~ya~~~l~~l~~ 209 (332)
..|-+.||||+|+||.... .-..-|.+.+.++.|.+.| . |+|.|++. ..-|+.+-+.||+
T Consensus 38 ~~Gik~li~DkDNTL~~~~------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgI 107 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPY------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGI 107 (168)
T ss_pred hcCceEEEEcCCCCCCCCC------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCC
Confidence 4599999999999998443 2456788999999999854 3 99999984 5666666666765
No 154
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.42 E-value=0.0056 Score=56.02 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=47.7
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHH--HHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVE--LKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~--~~l~~l~~~ 210 (332)
..++++||+||||++.. ..-||..++|++|.+ ++.++|.|+++....+ .+|+.+|+.
T Consensus 7 ~~~~~~~D~dG~l~~~~--------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGN--------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred cCCEEEEecccccccCC--------ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence 45689999999999653 247999999999997 7999999999888766 678888774
No 155
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.34 E-value=0.017 Score=42.80 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=54.7
Q ss_pred EEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCC-----CCCceEeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 16 LTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVL-----PKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 16 i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp-----~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
++|-++ |+|++|.+.++...++..|-..+.+...|. -+..|.++ +++++.++..|.+++|.+|+.+.+
T Consensus 7 VTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~n---Ka~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 7 VTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMN---KAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEec---cceEecCCceEEeccccCCCEEEe
Confidence 455555 789999999999999999988887765543 24566776 788999999999999999998754
No 156
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.34 E-value=0.0075 Score=56.16 Aligned_cols=57 Identities=26% Similarity=0.272 Sum_probs=48.3
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.|++++||||||++... ...|...+.|+.+.+ ++.++|.|.-+...+..+++++++.
T Consensus 4 ~kli~~DlDGTLl~~~~-------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCCCC-------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 67999999999997532 245778899999998 6999999999999999999988864
No 157
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.33 E-value=0.0047 Score=55.39 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=35.7
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhC
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELG 208 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~ 208 (332)
+..|||+.+||+++.+ ++.++|.|++...|++.+++.++
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 108 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV 108 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhC
Confidence 4689999999999998 69999999999999999998764
No 158
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=96.23 E-value=0.0072 Score=50.09 Aligned_cols=52 Identities=27% Similarity=0.202 Sum_probs=39.9
Q ss_pred ceEEEecCCceEeccCCCCCCc-eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHH
Q 042485 148 KLLVLDIDYTLFDHRSTAENPL-QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVE 201 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~-~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~ 201 (332)
|++++||||||+..... .+. ....|.+.+.|+.+++ .+.++++|+-...+..
T Consensus 2 K~i~~DiDGTL~~~~~~--~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 2 KRLVMDLDNTITLTENG--DYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred CEEEEeCCCCcccCCCC--cccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 68999999999864311 111 3477899999999855 8999999998887765
No 159
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=96.10 E-value=0.0089 Score=53.76 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=33.9
Q ss_pred ecCCcHHHHHH-HHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 171 LMRPYLHEFLT-AAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 171 ~~RP~l~eFL~-~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
..+|++.+.|+ .+.+ ++.++|-|++...|++++++.+++
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~ 134 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNF 134 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccc
Confidence 46899999995 7884 999999999999999999977544
No 160
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.08 E-value=0.0085 Score=54.90 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=36.8
Q ss_pred eecCCcHHHHHHHHHh---CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 170 QLMRPYLHEFLTAAYA---EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~---~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
+...||+.+|++.+.+ .++++|-|.+..-|++.+|+..|+.
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~ 113 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLR 113 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCc
Confidence 4589999999999943 7999999999999999999988874
No 161
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.08 E-value=0.013 Score=53.19 Aligned_cols=54 Identities=26% Similarity=0.197 Sum_probs=44.8
Q ss_pred eEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 149 LLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
++++||||||++... .-|...++|+.+.+ +..+++.|.-+...+...++++|+.
T Consensus 1 li~~DlDGTLl~~~~--------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY--------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred CEEEeCCCCCcCCCC--------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 478999999998421 23568999999997 6999999999999999999988863
No 162
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.07 E-value=0.01 Score=53.12 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=44.1
Q ss_pred eEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 149 LLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
++++||||||++... . .-|-..+.|+.+.+ +..+++.|.-+...+..+++.+++
T Consensus 1 ~i~~DlDGTLL~~~~------~-~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~ 55 (221)
T TIGR02463 1 WVFSDLDGTLLDSHS------Y-DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGL 55 (221)
T ss_pred CEEEeCCCCCcCCCC------C-CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 479999999997632 1 12226789999887 699999999999999999999886
No 163
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=95.93 E-value=0.018 Score=49.49 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=43.2
Q ss_pred eEEEecCCceEeccCCCC----CCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHH---HHHHH
Q 042485 149 LLVLDIDYTLFDHRSTAE----NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVE---LKMEE 206 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~~----~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~---~~l~~ 206 (332)
.+++|+||||+.+..... -..-...|+..++++.+.+ .|.+++.|+-....+. ..+.+
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 478999999998752110 0012568999999999998 6999999999888775 55555
No 164
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=95.89 E-value=0.017 Score=51.57 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=46.4
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
|++++||||||++... ..-|...+-|+.+.+ ++.++|.|.-+...+..+++.+++
T Consensus 2 k~v~~DlDGTLl~~~~-------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~ 57 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGT 57 (215)
T ss_pred cEEEEecCCCcCCCCc-------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCC
Confidence 6899999999996421 366788888999987 699999999999999998888765
No 165
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=95.84 E-value=0.027 Score=52.02 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=47.1
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
.|++++||||||++... ..-|...+.|+.+.+ ++.++|.|.-+...+..+++++++.
T Consensus 3 ~kli~~DlDGTLl~~~~-------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH-------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred eEEEEEecCCcCcCCCC-------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 58999999999997632 245667788888887 6999999999999999999988764
No 166
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.74 E-value=0.09 Score=39.68 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=56.7
Q ss_pred CCceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-ceEeeccCCCcccC-c-ccccccCCCCCCceEEE
Q 042485 12 SSEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKR-QKLLYPKIGNKLAD-D-TVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~-QkLl~~k~~gk~l~-d-~~~L~~~~i~~g~~l~l 86 (332)
....++|.|+. .|+.+.-....++||.+|.+-|......+... =.|+- -+..+.+. + +.+|.++|+.++..|+|
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~-~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELIT-AFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEE-SSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEe-CCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 34578899996 67788889999999999999999998888765 55642 11233443 3 37999999999999886
No 167
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=95.73 E-value=0.014 Score=50.88 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=74.6
Q ss_pred CcceEEEecCCceEeccCC--CC---CCceecCCcHHHHHHHHH-hCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE
Q 042485 146 GKKLLVLDIDYTLFDHRST--AE---NPLQLMRPYLHEFLTAAY-AEYDIMIWSATSMKWVELKMEELGVLTNPNYKITA 219 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~--~~---~~~~~~RP~l~eFL~~l~-~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~ 219 (332)
.-+++|||.||+|-+-+-. .+ ...+..|-++- +..|. .++.++|.|+....++..+++.+++. .
T Consensus 6 ~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~--~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~--------~ 75 (169)
T TIGR02726 6 NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMG--VIVLQLCGIDVAIITSKKSGAVRHRAEELKIK--------R 75 (169)
T ss_pred cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHH--HHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc--------E
Confidence 4789999999999987432 11 12345676654 23333 47999999999999999999988774 2
Q ss_pred EecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 220 LLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 220 ~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
+|+. . .. .-+.+..+-.++ + .+++++++|-|+..-..+....|+.+.+-.
T Consensus 76 ~f~~--------~-kp--kp~~~~~~~~~l-~-~~~~ev~~iGD~~nDi~~~~~ag~~~am~n 125 (169)
T TIGR02726 76 FHEG--------I-KK--KTEPYAQMLEEM-N-ISDAEVCYVGDDLVDLSMMKRVGLAVAVGD 125 (169)
T ss_pred EEec--------C-CC--CHHHHHHHHHHc-C-cCHHHEEEECCCHHHHHHHHHCCCeEECcC
Confidence 2221 0 00 011222222222 3 478999999999887777766777666653
No 168
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.73 E-value=0.023 Score=52.84 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=47.0
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
+.++++++||||||++... ..-|-..+-|+.+.+ +..++|.|.-+...+..+++++++
T Consensus 5 ~~~~lI~~DlDGTLL~~~~-------~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~ 63 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHT-------YDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGL 63 (271)
T ss_pred CCCeEEEEeCccCCcCCCC-------cCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCC
Confidence 3578999999999997532 123456677888887 699999999999999999999886
No 169
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=95.70 E-value=0.017 Score=51.69 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=45.9
Q ss_pred EEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 150 LVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 150 LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
|++||||||+++.. . .-|...+.|+.+.+ +..++|.|.-+...+...++.+++.
T Consensus 1 i~~DlDGTLl~~~~-----~--i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLLNSDG-----K--ISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTCSTTS-----S--SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred cEEEECCceecCCC-----e--eCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 68999999998542 1 55888999998885 8999999999999999999988763
No 170
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.68 E-value=0.022 Score=45.01 Aligned_cols=48 Identities=27% Similarity=0.287 Sum_probs=38.8
Q ss_pred EEEEec--CCCCHHHHHHHHHHHhC--CCCCCceEeeccCCCcccCcccccccCC
Q 042485 27 YTVRVC--GDDSVAELKRRICELTN--VLPKRQKLLYPKIGNKLADDTVLLSQLP 77 (332)
Q Consensus 27 ~~i~v~--~~~tV~~LK~~I~~~tg--vp~~~QkLl~~k~~gk~l~d~~~L~~~~ 77 (332)
.+++++ .+.||..||+.|.+.-+ ..-.++|||| .|++|.|...|+..-
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~---~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIY---AGRLLNDHTDLSSEL 65 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeee---cCcccCccchhhhhh
Confidence 445665 88999999999999983 5666788898 999999988877653
No 171
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=95.67 E-value=0.029 Score=51.64 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=45.7
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.|++++||||||++... ..-|-..+-|+.+.+ +..++|.|.-....+...++++++
T Consensus 3 ~kli~~DlDGTLl~~~~-------~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (272)
T PRK10530 3 YRVIALDLDGTLLTPKK-------TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALAL 59 (272)
T ss_pred ccEEEEeCCCceECCCC-------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCC
Confidence 58999999999997642 245556788888887 799999999999888888888875
No 172
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=95.63 E-value=0.026 Score=50.68 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=46.4
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.|++++||||||++... ...|...+-|..+.+ +..++|.|.-+...+..+++.+++
T Consensus 3 ~kli~~DlDGTLl~~~~-------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 59 (230)
T PRK01158 3 IKAIAIDIDGTITDKDR-------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGT 59 (230)
T ss_pred eeEEEEecCCCcCCCCC-------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 47999999999996532 256778888888886 689999999999999988888876
No 173
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.63 E-value=0.026 Score=53.26 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=45.7
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
+|++++||||||+++.. + .-+-..+-|+.|.+ ...+++.|+-+..-+..++++|++.
T Consensus 1 ~KLIftDLDGTLLd~~~-----~--~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEF-----N--SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred CcEEEEeCCCCCcCCCC-----c--CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 47899999999998643 1 22446777888887 6999999999998888899988864
No 174
>PRK10444 UMP phosphatase; Provisional
Probab=95.62 E-value=0.024 Score=52.40 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=42.6
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHh
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEEL 207 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l 207 (332)
++++|||||||++.. ..-|+..+|++.+.+ +..+++.|+++..-.....++|
T Consensus 2 ~~v~~DlDGtL~~~~--------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 2 KNVICDIDGVLMHDN--------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred cEEEEeCCCceEeCC--------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 578999999999774 246999999999998 7999999999887665555544
No 175
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=95.59 E-value=0.023 Score=52.18 Aligned_cols=54 Identities=24% Similarity=0.373 Sum_probs=44.9
Q ss_pred eEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 149 LLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
++++||||||++... ..-|...+.|+.+.+ ++.++|.|.-+...+...++++++
T Consensus 1 li~~DlDGTLl~~~~-------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~ 55 (256)
T TIGR00099 1 LIFIDLDGTLLNDDH-------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGL 55 (256)
T ss_pred CEEEeCCCCCCCCCC-------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 478999999997531 255678888999887 699999999999999988888765
No 176
>PLN02811 hydrolase
Probab=95.58 E-value=0.016 Score=52.05 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=65.4
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHH-hCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEE-LGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~-l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
...||+.+||+.|++ ++.++|.|++...++...+.. .++. + +|+. +++..+... ...|+-+.+|..
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~-------~f~~--i~~~~~~~~--~~~KP~p~~~~~ 145 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-S-------LMHH--VVTGDDPEV--KQGKPAPDIFLA 145 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-h-------hCCE--EEECChhhc--cCCCCCcHHHHH
Confidence 467999999999998 799999999998766544322 1221 1 1111 111110011 133777766654
Q ss_pred ----CC--CcCCCCcEEEEeCCccccccCCCCeeeecccc
Q 042485 249 ----FP--EFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFR 282 (332)
Q Consensus 249 ----~~--~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~ 282 (332)
+. + .+++++|+|+|+...+......|+++.-+.
T Consensus 146 a~~~~~~~~-~~~~~~v~IgDs~~di~aA~~aG~~~i~v~ 184 (220)
T PLN02811 146 AARRFEDGP-VDPGKVLVFEDAPSGVEAAKNAGMSVVMVP 184 (220)
T ss_pred HHHHhCCCC-CCccceEEEeccHhhHHHHHHCCCeEEEEe
Confidence 32 3 479999999999999998888998876663
No 177
>PRK10976 putative hydrolase; Provisional
Probab=95.35 E-value=0.033 Score=51.29 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=45.6
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.|++++||||||++... ..-|...+-|+.+.+ +..++|.|.-+...+...++.+++
T Consensus 2 ikli~~DlDGTLl~~~~-------~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 58 (266)
T PRK10976 2 YQVVASDLDGTLLSPDH-------TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEI 58 (266)
T ss_pred ceEEEEeCCCCCcCCCC-------cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCC
Confidence 47999999999997632 245667788888887 799999999999988888888775
No 178
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.26 Score=38.75 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=66.6
Q ss_pred CceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 13 SEELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 13 ~~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
.+-|+++|+- .+....+.|--+++..-|...-++..|++-..-+.+| .|..+.+..|=.+++..+|+.|-++....
T Consensus 18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlF---dG~rI~~~~TP~~L~mEd~D~Iev~~~q~ 94 (99)
T KOG1769|consen 18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLF---DGQRIRETHTPADLEMEDGDEIEVVQEQT 94 (99)
T ss_pred cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEE---CCcCcCCCCChhhhCCcCCcEEEEEeecc
Confidence 4668888884 4556678999999999999999999999999999998 89888888899999999999999887554
Q ss_pred C
Q 042485 92 D 92 (332)
Q Consensus 92 ~ 92 (332)
+
T Consensus 95 g 95 (99)
T KOG1769|consen 95 G 95 (99)
T ss_pred c
Confidence 3
No 179
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=95.32 E-value=0.031 Score=51.41 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=44.4
Q ss_pred eEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 149 LLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
++++||||||++... ..-+...++++.+.+ ++.+++.|.-+...+..+++.+++
T Consensus 1 li~~DlDGTll~~~~-------~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~ 55 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG-------YDWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGL 55 (256)
T ss_pred CEEEcCCCCCcCCCC-------cCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 478999999997642 122347899999998 699999999999999999998876
No 180
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.30 E-value=0.035 Score=51.39 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=43.5
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHH---HHHHHHHHhCCC
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMK---WVELKMEELGVL 210 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~---ya~~~l~~l~~~ 210 (332)
++++||+||||++.... .-..-|+..++|+.+.+ ...+++.|+.+.+ .+...|+.+|+.
T Consensus 2 k~i~~D~DGtl~~~~~~----~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 2 KGVLLDISGVLYISDAK----SGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred CEEEEeCCCeEEeCCCc----ccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 58999999999976421 01156899999999997 6999999976554 344556666763
No 181
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=95.30 E-value=0.04 Score=52.76 Aligned_cols=55 Identities=18% Similarity=0.094 Sum_probs=43.8
Q ss_pred eEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-----CCcEEEEcCCc----HHHHHHHHHHhCCCC
Q 042485 149 LLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-----EYDIMIWSATS----MKWVELKMEELGVLT 211 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-----~yeivI~Tas~----~~ya~~~l~~l~~~~ 211 (332)
.++||+||||+++.. .-|+..||++.+.. .+.+++.|+++ ..+++.+.+++|+..
T Consensus 2 ~~ifD~DGvL~~g~~--------~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~ 65 (321)
T TIGR01456 2 GFAFDIDGVLFRGKK--------PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDV 65 (321)
T ss_pred EEEEeCcCceECCcc--------ccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCC
Confidence 689999999998743 37999999999997 78999999876 445666557777643
No 182
>PLN02645 phosphoglycolate phosphatase
Probab=95.30 E-value=0.034 Score=52.99 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=43.0
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHH---HHHhCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELK---MEELGVL 210 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~---l~~l~~~ 210 (332)
.++++||+||||++... .=||..++|+.+.+ +..+++.|+.+.+....+ |+.+|+.
T Consensus 28 ~~~~~~D~DGtl~~~~~--------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 28 VETFIFDCDGVIWKGDK--------LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred CCEEEEeCcCCeEeCCc--------cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 57999999999997531 23999999999997 799999999884444333 4556764
No 183
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=95.21 E-value=0.042 Score=50.91 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=46.3
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.|++++||||||++... ..-|.-.+-|+.+.+ +..++|.|.-+...+..+++++++
T Consensus 2 ~kli~~DlDGTLl~~~~-------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~ 58 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDH-------HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSL 58 (272)
T ss_pred ccEEEEeCCCcCcCCCC-------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCC
Confidence 47999999999997532 255667788888887 699999999999999999988876
No 184
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=95.21 E-value=0.045 Score=48.12 Aligned_cols=118 Identities=15% Similarity=0.056 Sum_probs=70.9
Q ss_pred cceEEEecCCceEeccCC--CCCCceecCCcHHHHHHHHHh-CCcEEEEcCCc----HH-----------HHHHHHHHhC
Q 042485 147 KKLLVLDIDYTLFDHRST--AENPLQLMRPYLHEFLTAAYA-EYDIMIWSATS----MK-----------WVELKMEELG 208 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~--~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~----~~-----------ya~~~l~~l~ 208 (332)
.|+|+||.||||+--..+ ..-......||+.+-|..+.+ .|.+||+|+.+ .- ++...|+..|
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~g 84 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQG 84 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcC
Confidence 789999999999954331 111124689999999999987 79999999932 11 2223333334
Q ss_pred CCCCCCceEEEE-ecCCceEEEeeCCCCCccccccccccccCC---CcCCCCcEEEEeCCccccccCCCCeee
Q 042485 209 VLTNPNYKITAL-LDHLAMITVQSDSRGIFDCKPLGLIWDQFP---EFYSSKNTIMFDDLRRNFVMNPQNGLA 277 (332)
Q Consensus 209 ~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~---~~~~~~~~iivDD~~~~~~~~p~Ngi~ 277 (332)
+ ++..+ +. .+.+..+....||-..++..+. + .++.+.++|=|...-..+.-..|+.
T Consensus 85 v------~id~i~~C------ph~p~~~c~cRKP~~gm~~~~~~~~~-iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 85 V------KIDGILYC------PHHPEDNCDCRKPKPGMLLSALKEYN-IDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred C------ccceEEEC------CCCCCCCCcccCCChHHHHHHHHHhC-CCccceEEecCcHHHHHHHHHCCCC
Confidence 3 22222 11 1112223344577666665421 3 4899999999996555444444443
No 185
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=95.20 E-value=0.028 Score=51.03 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=66.4
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
..+.|++.++|+++.+ ++.++|+|+++......+++..+.. +-...+..+||. ..| .|+-+..|.+
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~-~L~~~f~~~fd~---------~~g---~KP~p~~y~~ 160 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAG-NLTPYFSGYFDT---------TVG---LKTEAQSYVK 160 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhcccc-chhhhcceEEEe---------Ccc---cCCCHHHHHH
Confidence 4578999999999987 7999999999999888877654210 101112223321 112 2555555543
Q ss_pred C---CCcCCCCcEEEEeCCccccccCCCCeeeeccc
Q 042485 249 F---PEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPF 281 (332)
Q Consensus 249 ~---~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f 281 (332)
. -+ .+++++++|+|+...+......|+...-+
T Consensus 161 i~~~lg-v~p~e~lfVgDs~~Di~AA~~AG~~ti~v 195 (220)
T TIGR01691 161 IAGQLG-SPPREILFLSDIINELDAARKAGLHTGQL 195 (220)
T ss_pred HHHHhC-cChhHEEEEeCCHHHHHHHHHcCCEEEEE
Confidence 1 14 48999999999999888888888875444
No 186
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.18 E-value=0.04 Score=50.27 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=51.2
Q ss_pred EEEEEe--CCeEEE-EEecCCCCHHHHHHHHH-HHhCCCCCCceEee-ccCCCcccCcccccccCCCCCCceEEEE
Q 042485 17 TLTVKW--SGKEYT-VRVCGDDSVAELKRRIC-ELTNVLPKRQKLLY-PKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 17 ~i~vk~--~g~~~~-i~v~~~~tV~~LK~~I~-~~tgvp~~~QkLl~-~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
.|+++- .|.... ..++...|+.|++..|. ....+-+.+|++-. ...+|+++.|+.+|+++++.+|.+|.+-
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 345553 333555 56789999999996665 55678886666652 1127999999999999999999887753
No 187
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.16 E-value=0.19 Score=37.90 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=55.0
Q ss_pred ceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCc---ccccccCCCCCCceEEE
Q 042485 14 EELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD---TVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 14 ~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d---~~~L~~~~i~~g~~l~l 86 (332)
...+|.|+ -+|+......+.++||.+|.+.|....+.....-.|+- .+..+.+.+ +.+|.++|+.++..|+|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t-~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNS-PFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEe-CCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 35678888 47888888999999999999999777777666677763 113345542 47999999999888876
No 188
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.14 E-value=0.064 Score=50.15 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=42.1
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHH---HHHHHHHHhCCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMK---WVELKMEELGVLT 211 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~---ya~~~l~~l~~~~ 211 (332)
-+++++||||||+.... .-||..++|+.+.+ +..+++.|+++.. .....++.+|+..
T Consensus 2 ~~~~~~D~DGtl~~~~~--------~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~ 62 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGER--------VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNG 62 (279)
T ss_pred ccEEEEeCCCceEcCCe--------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 35889999999987531 45889999999997 6899999985432 2224567777743
No 189
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=95.11 E-value=0.11 Score=48.05 Aligned_cols=134 Identities=19% Similarity=0.324 Sum_probs=80.8
Q ss_pred CcceEEEecCCceEeccCC-----CC--------------------------------CCceecCCcHHHHHHHHHh-CC
Q 042485 146 GKKLLVLDIDYTLFDHRST-----AE--------------------------------NPLQLMRPYLHEFLTAAYA-EY 187 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~-----~~--------------------------------~~~~~~RP~l~eFL~~l~~-~y 187 (332)
..-++|||+|.||+-+... |. ......-|.+-+|++.+.+ +.
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 5678999999999966521 00 1123567899999999997 79
Q ss_pred cEEEEcCCcHHHHHHHHHHh---CCCCCCC-ce----EE-EEecC----Cce-----EEEeeCCCCCccccccccccccC
Q 042485 188 DIMIWSATSMKWVELKMEEL---GVLTNPN-YK----IT-ALLDH----LAM-----ITVQSDSRGIFDCKPLGLIWDQF 249 (332)
Q Consensus 188 eivI~Tas~~~ya~~~l~~l---~~~~~~~-~~----~~-~~~d~----~~~-----~~~~~~~~g~~~~KdL~~i~~~~ 249 (332)
.+...|+..+.+...-+++| |+..... .+ +. ..++. ... +.+.....| .-|..+..+.
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG----~~L~~fL~~~ 174 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKG----EVLKYFLDKI 174 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCCCccH----HHHHHHHHHc
Confidence 99999999988877766555 5432111 01 10 01111 000 101111122 2244443333
Q ss_pred CCcCCCCcEEEEeCCccccc----cCCCCeeeeccccCCc
Q 042485 250 PEFYSSKNTIMFDDLRRNFV----MNPQNGLAIKPFRKAH 285 (332)
Q Consensus 250 ~~~~~~~~~iivDD~~~~~~----~~p~Ngi~I~~f~~~~ 285 (332)
+ +.|+++|+|||+..+.. .....||.--.|.+.+
T Consensus 175 -~-~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~ 212 (252)
T PF11019_consen 175 -N-QSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTG 212 (252)
T ss_pred -C-CCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcc
Confidence 4 48999999999988764 2344888887887743
No 190
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.031 Score=49.67 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=60.1
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
.++...-.++.+.+.++.-+||.++|.++.+.-|+.+..|++.+ +|+++-|.+.|.++++..|++..+-+
T Consensus 148 lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~---Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 148 LKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFF---SGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeec---cCCceeccccceeeeecCCCEEEEEE
Confidence 34444445777888999999999999999999999999999998 88899999999999999997766554
No 191
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=94.83 E-value=0.025 Score=55.27 Aligned_cols=119 Identities=24% Similarity=0.371 Sum_probs=85.4
Q ss_pred CcceEEEecCCceEeccCCC--------------------------CCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTA--------------------------ENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKW 199 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~--------------------------~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~y 199 (332)
.+..||.|+|.|.+|+.... ..++++.||++..|+...++.|++.++|.+...|
T Consensus 25 ~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~~~ 104 (390)
T COG5190 25 KKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTRAY 104 (390)
T ss_pred cccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeeccccc
Confidence 55678999999999987643 1356889999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCcccc---ccCCCCee
Q 042485 200 VELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNF---VMNPQNGL 276 (332)
Q Consensus 200 a~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~---~~~p~Ngi 276 (332)
++.+.+.. +|..+... |+ .. .....+....|-+++++. . +...++++||.+..+ -++. |.+
T Consensus 105 ~~~~~~i~----d~~g~~~~--d~--~~--~~~~~~~~~~~s~~~l~p---~--~~n~~vi~~d~~~~~~~~d~~~-~~v 168 (390)
T COG5190 105 AERIAKII----DPTGKLFN--DR--IL--SRDESGSLSQKSLSRLFP---K--DQNMVVIIDDRGDVWGVGDMNS-NFV 168 (390)
T ss_pred hhhhhhcc----cccccccc--cc--cc--cccccccchhhhhhhcCc---c--ccccccccccccccCCccchhh-hhh
Confidence 98876432 44433211 11 11 112234455677888854 3 788999999999988 4443 666
Q ss_pred eecc
Q 042485 277 AIKP 280 (332)
Q Consensus 277 ~I~~ 280 (332)
...+
T Consensus 169 ~~~~ 172 (390)
T COG5190 169 AKSP 172 (390)
T ss_pred cccc
Confidence 6666
No 192
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.72 E-value=0.034 Score=50.94 Aligned_cols=88 Identities=22% Similarity=0.151 Sum_probs=58.3
Q ss_pred CcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc---C
Q 042485 174 PYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ---F 249 (332)
Q Consensus 174 P~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~---~ 249 (332)
.++.++|+.+.+ .+.|.+.|+...++= .++..+++. .+||. .+.++.-| ..||-+.||.. .
T Consensus 116 ~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~--------~~fD~----vv~S~e~g--~~KPDp~If~~al~~ 180 (237)
T KOG3085|consen 116 DGMQELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS--------AYFDF----VVESCEVG--LEKPDPRIFQLALER 180 (237)
T ss_pred cHHHHHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH--------Hhhhh----hhhhhhhc--cCCCChHHHHHHHHH
Confidence 345588888887 678888888887764 555555442 23332 22223333 56999999876 2
Q ss_pred CCcCCCCcEEEEeCCccc-cccCCCCeee
Q 042485 250 PEFYSSKNTIMFDDLRRN-FVMNPQNGLA 277 (332)
Q Consensus 250 ~~~~~~~~~iivDD~~~~-~~~~p~Ngi~ 277 (332)
-+ -.|+.+|+|||+..+ +.....-|+.
T Consensus 181 l~-v~Pee~vhIgD~l~nD~~gA~~~G~~ 208 (237)
T KOG3085|consen 181 LG-VKPEECVHIGDLLENDYEGARNLGWH 208 (237)
T ss_pred hC-CChHHeEEecCccccccHhHHHcCCE
Confidence 23 379999999999999 6655555543
No 193
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=94.71 E-value=0.062 Score=47.39 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=43.3
Q ss_pred eEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhC-CcEEEEcCCcHHHHHHHHHH
Q 042485 149 LLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAE-YDIMIWSATSMKWVELKMEE 206 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~-yeivI~Tas~~~ya~~~l~~ 206 (332)
++++|+||||++... ....|.+.+.|+.+.+. ..++|.|.-+..++..++..
T Consensus 1 li~~D~DgTL~~~~~------~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA------HELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred CEEEeCcCCCcCCCC------CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 478999999997531 23568899999999984 89999999999999998875
No 194
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=94.70 E-value=0.094 Score=48.28 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=41.6
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCc---HHHHHHHHHHhCCC
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATS---MKWVELKMEELGVL 210 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~---~~ya~~~l~~l~~~ 210 (332)
++++||+||||+.... .-|+..++|+.+.+ +..+++.|+++ ..-+...++.+|+.
T Consensus 2 ~~~~~D~DGtl~~~~~--------~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKE--------RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred CEEEEeCCCceEcCCe--------eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 5789999999997632 23789999999997 69999999633 44445567777764
No 195
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=94.61 E-value=0.066 Score=49.89 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=45.1
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh--CCcEEEEcCCcHHHHHHHHHHh
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA--EYDIMIWSATSMKWVELKMEEL 207 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~--~yeivI~Tas~~~ya~~~l~~l 207 (332)
.+.++++|+||||+.....+.. ...-|.+.+-|+.|.+ ...++|.|.-+...+...+..+
T Consensus 13 ~~~li~~D~DGTLl~~~~~p~~--~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKPHPDQ--VVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred CCEEEEEecCCCCCCCCCCccc--ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 4678999999999976433222 2355888999999986 5789999999888887766543
No 196
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.36 E-value=0.093 Score=47.39 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=52.4
Q ss_pred CcceEEEecCCceEeccCCCC-------------------------------------C----------CceecCCcHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAE-------------------------------------N----------PLQLMRPYLHE 178 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~-------------------------------------~----------~~~~~RP~l~e 178 (332)
.+.+++||.|.|+|+-.+... + -.+-.-||+-+
T Consensus 12 ~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv~ 91 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMVR 91 (256)
T ss_pred CcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHHH
Confidence 678999999999998765210 0 02347899999
Q ss_pred HHHHHHh--CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 179 FLTAAYA--EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 179 FL~~l~~--~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
.++.+++ .||++|-|.+..-+++.+|++.++
T Consensus 92 lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 92 LIKSAAKLGCFELIIVSDANSFFIEEILEAAGI 124 (256)
T ss_pred HHHHHHhCCCceEEEEecCchhHHHHHHHHccH
Confidence 9999998 389999999999999999998864
No 197
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=94.31 E-value=0.056 Score=47.60 Aligned_cols=28 Identities=21% Similarity=0.090 Sum_probs=20.0
Q ss_pred ecCCcHHHHHHHHHhC-CcEEEEcCCcHH
Q 042485 171 LMRPYLHEFLTAAYAE-YDIMIWSATSMK 198 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~-yeivI~Tas~~~ 198 (332)
..-||..|.|+.|.+. +++++-|+....
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 4678999999999995 577777776654
No 198
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=94.29 E-value=0.076 Score=47.38 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=42.3
Q ss_pred EEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 150 LVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 150 LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
+++||||||+++.. ...|-..+-|+.+.+ +..+++.|.-+...+..+++.++.
T Consensus 1 i~~DlDGTLl~~~~-------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 1 IASDIDGTLTDPNR-------AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGT 54 (225)
T ss_pred CeEeccCccCCCCc-------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 58999999997642 245566777888887 699999999999988888888764
No 199
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=94.11 E-value=0.065 Score=48.99 Aligned_cols=59 Identities=25% Similarity=0.266 Sum_probs=41.1
Q ss_pred ccCCCcCCcceEEEecCCceEeccCCC------------CC--Cc-----eecCCcHHHHHHHHHhCC-cEEEEcCCcH
Q 042485 139 LRNPSREGKKLLVLDIDYTLFDHRSTA------------EN--PL-----QLMRPYLHEFLTAAYAEY-DIMIWSATSM 197 (332)
Q Consensus 139 ~l~~~~~~kk~LVLDLD~TLi~~~~~~------------~~--~~-----~~~RP~l~eFL~~l~~~y-eivI~Tas~~ 197 (332)
.++++...++.+|+|||+|+++.+.-. ++ .+ -..-||..|||+++.++- .|..-|.-..
T Consensus 71 ~~k~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~ 149 (274)
T COG2503 71 QAKKKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQ 149 (274)
T ss_pred hhccccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccch
Confidence 566777788899999999999876421 11 11 246799999999999864 4444444333
No 200
>PTZ00174 phosphomannomutase; Provisional
Probab=94.03 E-value=0.11 Score=47.76 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=40.1
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKME 205 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~ 205 (332)
..|++++||||||+++.. ..-|...+-|+.+.+ +..++|.|.-+..-+...+.
T Consensus 4 ~~klia~DlDGTLL~~~~-------~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 4 KKTILLFDVDGTLTKPRN-------PITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCeEEEEECcCCCcCCCC-------CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 468999999999997743 244667788888887 69999999877765554443
No 201
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=93.67 E-value=0.16 Score=53.13 Aligned_cols=58 Identities=26% Similarity=0.284 Sum_probs=46.0
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
..+|++++||||||+++.. ++. +...+-|+.+.+ +..+++.|.-+...+..+++++++
T Consensus 414 ~~~KLIfsDLDGTLLd~d~-----~i~--~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLT-----YSY--STALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred ceeeEEEEECcCCCcCCCC-----ccC--HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 4688999999999998743 122 234667888876 699999999999999999988875
No 202
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=93.63 E-value=0.21 Score=45.66 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=49.2
Q ss_pred CCcCCcceEEEecCCceEeccC-------CCC------------CCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHH--
Q 042485 142 PSREGKKLLVLDIDYTLFDHRS-------TAE------------NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKW-- 199 (332)
Q Consensus 142 ~~~~~kk~LVLDLD~TLi~~~~-------~~~------------~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~y-- 199 (332)
....++..+|||+|+|+++... ..+ ...-..-|+..+|++.+.+ +++|++.|.=+...
T Consensus 72 ~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~ 151 (229)
T TIGR01675 72 LSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRN 151 (229)
T ss_pred ccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHH
Confidence 3456999999999999998642 111 1123478899999999987 79999999988776
Q ss_pred -HHHHHHHhCC
Q 042485 200 -VELKMEELGV 209 (332)
Q Consensus 200 -a~~~l~~l~~ 209 (332)
+..-|.+.|+
T Consensus 152 ~T~~nL~~~G~ 162 (229)
T TIGR01675 152 ATLDNLINAGF 162 (229)
T ss_pred HHHHHHHHcCC
Confidence 3344444554
No 203
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=93.62 E-value=0.14 Score=46.93 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=44.0
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhC-CcEEEEcCCcHHHHHHHHHHhCCCCCCC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAE-YDIMIWSATSMKWVELKMEELGVLTNPN 214 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~-yeivI~Tas~~~ya~~~l~~l~~~~~~~ 214 (332)
+.+++.||||||+++... .....|.+.+.++.+.+. -.+++.|.-+..-+..+++++++. .|.
T Consensus 1 ~~li~tDlDGTLl~~~~~----~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~-~p~ 64 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDG----DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL-TPD 64 (249)
T ss_pred CeEEEEcCCCcCcCCCCC----ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCC-CCC
Confidence 357888999999975421 133558888888888874 477777777777777777767653 344
No 204
>PLN02887 hydrolase family protein
Probab=93.60 E-value=0.14 Score=53.05 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=47.0
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
..|++++||||||+++.. ..-|.-.+-|+.+.+ +..++|.|.=....+...++.+++.
T Consensus 307 ~iKLIa~DLDGTLLn~d~-------~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKS-------QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred CccEEEEeCCCCCCCCCC-------ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 578999999999997632 245566788888887 7999999999999888888888763
No 205
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=93.18 E-value=0.025 Score=53.24 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=0.0
Q ss_pred CCceEEEEEEe-CCeEEEEEec-----CCCCHHHHHHHHHH----------HhCCCCCCce-----EeeccCCCcccCcc
Q 042485 12 SSEELTLTVKW-SGKEYTVRVC-----GDDSVAELKRRICE----------LTNVLPKRQK-----LLYPKIGNKLADDT 70 (332)
Q Consensus 12 ~~~~i~i~vk~-~g~~~~i~v~-----~~~tV~~LK~~I~~----------~tgvp~~~Qk-----Ll~~k~~gk~l~d~ 70 (332)
+...|+|++|- .+-...|.++ .+.+|.|+|.++++ .++||.+..| |++ +.|++.|.
T Consensus 75 s~~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~---~kkPv~~~ 151 (309)
T PF12754_consen 75 SSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLY---KKKPVGDS 151 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhhee---cCccCCCc
Confidence 45678899884 4445555442 26899999999999 9999999999 997 55677666
Q ss_pred cccccCCCC-----------CCceEEEEecCCC
Q 042485 71 VLLSQLPLK-----------SSLKMTMIGTVED 92 (332)
Q Consensus 71 ~~L~~~~i~-----------~g~~l~l~gs~~~ 92 (332)
.+|.++.-. -..-+|+||....
T Consensus 152 ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa~~ 184 (309)
T PF12754_consen 152 KTLAEVLADSESRLLSGGKEVEFGVMVLGGAAV 184 (309)
T ss_dssp ---------------------------------
T ss_pred CcHHHHHhcccchhccCCceEEEEEEEECCccc
Confidence 776665322 1235788886654
No 206
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.10 E-value=0.82 Score=34.46 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=51.9
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCc---ccccccCCCCCCceEEE
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADD---TVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d---~~~L~~~~i~~g~~l~l 86 (332)
..+|.|+ .+|+...-..+.++|+.++.+.|....+.. ..-.|+- -+..|.+.+ +.+|.++||.+...|+|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t-~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMT-PFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEe-CCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4678888 578888889999999999999999766543 4455552 113444532 57999999999988876
No 207
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=93.10 E-value=0.39 Score=41.35 Aligned_cols=65 Identities=22% Similarity=0.321 Sum_probs=46.4
Q ss_pred EEEEEE-eCC----eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc-CcccccccCCCCC
Q 042485 16 LTLTVK-WSG----KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA-DDTVLLSQLPLKS 80 (332)
Q Consensus 16 i~i~vk-~~g----~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l-~d~~~L~~~~i~~ 80 (332)
|+|.|+ ..| .++.+.+++++||.+|+..|.+.+++++..|-.++...++.+. .++..++.+.-..
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~ 71 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSS 71 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCc
Confidence 467777 577 4788899999999999999999999999997434332133332 4556666664333
No 208
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=93.04 E-value=0.19 Score=47.01 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=43.4
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHh
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEEL 207 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l 207 (332)
...+++|||||||++... .=||..|||+.+.+ .-.+++-|+++.+-.+.+.++|
T Consensus 7 ~y~~~l~DlDGvl~~G~~--------~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 7 KYDGFLFDLDGVLYRGNE--------AIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred hcCEEEEcCcCceEeCCc--------cCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 456899999999996643 56999999999998 5999999999887666444443
No 209
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=92.88 E-value=0.28 Score=41.28 Aligned_cols=86 Identities=20% Similarity=0.186 Sum_probs=50.1
Q ss_pred ecCCcHHHHHHHHHhCCcEEEEcCCc--HHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCcccccccccccc
Q 042485 171 LMRPYLHEFLTAAYAEYDIMIWSATS--MKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWDQ 248 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~~yeivI~Tas~--~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~~ 248 (332)
..-||.++-++.|-+.|+|.|.|++. +.-++.+.+=|.-. -| +++.+..+ .... |++-..
T Consensus 68 ~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~-FP------Fi~~qn~v--fCgn------Knivka--- 129 (180)
T COG4502 68 GVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEK-FP------FISYQNIV--FCGN------KNIVKA--- 129 (180)
T ss_pred CccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHH-CC------CCChhhEE--EecC------CCeEEe---
Confidence 46799999999999999999999994 44444443322000 01 11111111 0111 333222
Q ss_pred CCCcCCCCcEEEEeCCccccccCCCCeeeeccccC
Q 042485 249 FPEFYSSKNTIMFDDLRRNFVMNPQNGLAIKPFRK 283 (332)
Q Consensus 249 ~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~~f~~ 283 (332)
=++|||.|.+..-..+|-|.-.+-.+
T Consensus 130 ---------DilIDDnp~nLE~F~G~kIlFdA~HN 155 (180)
T COG4502 130 ---------DILIDDNPLNLENFKGNKILFDAHHN 155 (180)
T ss_pred ---------eEEecCCchhhhhccCceEEEecccc
Confidence 35899999988777777776544443
No 210
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=92.57 E-value=0.58 Score=34.99 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=38.7
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
++|++.++|..+.+.++.+.|..+|+++|....+.+....+|-|
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y 45 (81)
T smart00666 2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKY 45 (81)
T ss_pred ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEE
Confidence 56778888899999999999999999999999998876777765
No 211
>PLN02423 phosphomannomutase
Probab=92.24 E-value=0.31 Score=44.77 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=34.1
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWV 200 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya 200 (332)
-+.++++||||||++... ..-|...+.++.+.+...+++.|.-....+
T Consensus 6 ~~~i~~~D~DGTLl~~~~-------~i~~~~~~ai~~l~~~i~fviaTGR~~~~~ 53 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRK-------EATPEMLEFMKELRKVVTVGVVGGSDLSKI 53 (245)
T ss_pred cceEEEEeccCCCcCCCC-------cCCHHHHHHHHHHHhCCEEEEECCcCHHHH
Confidence 344566999999997642 245777888999988877777777644433
No 212
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=92.22 E-value=1.2 Score=33.16 Aligned_cols=68 Identities=9% Similarity=0.157 Sum_probs=47.7
Q ss_pred eEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccC---cccccccCCCCCCceE
Q 042485 15 ELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLAD---DTVLLSQLPLKSSLKM 84 (332)
Q Consensus 15 ~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~---d~~~L~~~~i~~g~~l 84 (332)
..+|.|+. .|+...-..+.++||.+|.+-|.....- ...-.|+. -+..+.+. .+.+|.++||.++..+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t-~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMT-SFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEe-CCCCccCCCCCccCcHHHcCCccceEE
Confidence 35688884 6777888999999999999999877543 44455653 11234443 5789999999954433
No 213
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=92.10 E-value=0.21 Score=45.52 Aligned_cols=52 Identities=25% Similarity=0.238 Sum_probs=37.6
Q ss_pred EEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCc----HHHHHHHHHHhCC
Q 042485 150 LVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATS----MKWVELKMEELGV 209 (332)
Q Consensus 150 LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~----~~ya~~~l~~l~~ 209 (332)
++||+||||++... .=|+..++|..+.+ .+.+.+-|+++ ..+++.+.+.+|+
T Consensus 1 ~lfD~DGvL~~~~~--------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~ 57 (236)
T TIGR01460 1 FLFDIDGVLWLGHK--------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGV 57 (236)
T ss_pred CEEeCcCccCcCCc--------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 48999999998743 25699999999998 59999998655 3344443332554
No 214
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=92.10 E-value=0.32 Score=45.44 Aligned_cols=60 Identities=23% Similarity=0.192 Sum_probs=48.6
Q ss_pred cCCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCc--EEEEcCCcHHHHHHHHH
Q 042485 144 REGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYD--IMIWSATSMKWVELKME 205 (332)
Q Consensus 144 ~~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~ye--ivI~Tas~~~ya~~~l~ 205 (332)
..++.+++||.||||.+....+ .-...=+++.+.|..|...+. ++|.|--+...++..+.
T Consensus 15 ~a~~~~~~lDyDGTl~~i~~~p--~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 15 NARKRLLFLDYDGTLTEIVPHP--EAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred cccceEEEEeccccccccccCc--cccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 3478899999999999886543 335667899999999999988 88888888888877654
No 215
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.97 E-value=0.76 Score=34.90 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=37.0
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 17 TLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 17 ~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
.|+|.+.+ ++.|.++++.+..+|.++|.++.++|++.-+|-|
T Consensus 4 vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsY 45 (80)
T cd06406 4 VVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSY 45 (80)
T ss_pred EEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEe
Confidence 45555555 8889999999999999999999999999999987
No 216
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=91.31 E-value=1.1 Score=41.37 Aligned_cols=100 Identities=18% Similarity=0.210 Sum_probs=60.0
Q ss_pred CceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEE---EecCCceEEEeeCCCCCccccccc
Q 042485 168 PLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITA---LLDHLAMITVQSDSRGIFDCKPLG 243 (332)
Q Consensus 168 ~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~---~~d~~~~~~~~~~~~g~~~~KdL~ 243 (332)
..+.+|.|..+|++.|.+ ..-+.||||+.-.-++.+|++.+.. .++.++.. .||.+..+.-....--..+.|+-.
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~-~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~ 165 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVF-HPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNES 165 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT---BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHH
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCC-CCCeEEEeeeEEECCcceEeecCCCceEEeeCCcc
Confidence 347899999999999999 5899999999999999999998765 56666543 245444333222221123446644
Q ss_pred cc-----cccCCCcCCCCcEEEEeCCccccccC
Q 042485 244 LI-----WDQFPEFYSSKNTIMFDDLRRNFVMN 271 (332)
Q Consensus 244 ~i-----~~~~~~~~~~~~~iivDD~~~~~~~~ 271 (332)
.+ |..+ -..+|+|++=|+..-..|.
T Consensus 166 ~l~~~~~~~~~---~~R~NvlLlGDslgD~~Ma 195 (246)
T PF05822_consen 166 ALEDSPYFKQL---KKRTNVLLLGDSLGDLHMA 195 (246)
T ss_dssp HHTTHHHHHCT---TT--EEEEEESSSGGGGTT
T ss_pred cccCchHHHHh---ccCCcEEEecCccCChHhh
Confidence 44 2222 2568999999998776664
No 217
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=0.55 Score=41.37 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=35.8
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhC
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELG 208 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~ 208 (332)
+..+||..+|.+++.+ ...++|-|++...|+.++++.++
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence 5799999999999999 59999999999999999998764
No 218
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.71 E-value=2.6 Score=32.31 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=52.7
Q ss_pred ceEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccC--------cccccccCCCCCCceE
Q 042485 14 EELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLAD--------DTVLLSQLPLKSSLKM 84 (332)
Q Consensus 14 ~~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~--------d~~~L~~~~i~~g~~l 84 (332)
..++|.++ -.|....-....+.||.+|.+-|... +-.++.-.|+. .+.-+.+. .+.||.++||.+...|
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t-~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVT-NFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEec-CCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 36788999 47887888899999999999999754 45667777764 11123443 3679999999987777
Q ss_pred EE
Q 042485 85 TM 86 (332)
Q Consensus 85 ~l 86 (332)
++
T Consensus 81 ~V 82 (85)
T cd01774 81 FV 82 (85)
T ss_pred EE
Confidence 65
No 219
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.59 E-value=3 Score=31.89 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=55.3
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc---CcccccccCCCCCCceEEE
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA---DDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l---~d~~~L~~~~i~~g~~l~l 86 (332)
.-+|.|+ -+|+...-....++|+.+|-..+++ .|.+++.-+|+- .+.-|.+ +.+.+|.++||.+..+|+|
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t-~FPRr~~~~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLT-NFPRRKLSHLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEec-CCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence 4568888 4788888899999999999999999 588999999983 1122333 3357999999999998876
No 220
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=90.57 E-value=0.81 Score=41.52 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=38.6
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
+...++++||||||+.+...+.. . ...+.++.+ +|+|+.-||-+.--....=+.||+.
T Consensus 5 ~~~~lIFtDlD~TLl~~~ye~~p----A----~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 5 QMPLLIFTDLDGTLLPHSYEWQP----A----APVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred ccceEEEEcccCcccCCCCCCCc----c----chHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 35667888999999986543322 2 234555665 8999999887765544444556765
No 221
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=90.55 E-value=1.3 Score=33.17 Aligned_cols=45 Identities=22% Similarity=0.373 Sum_probs=39.7
Q ss_pred eEEEEEEeCCeEEE-EEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 15 ELTLTVKWSGKEYT-VRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 15 ~i~i~vk~~g~~~~-i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
++.|++.++|..+. +.++.+.|..+|+++|++..+.+...-+|-|
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y 46 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKY 46 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEe
Confidence 36788889999888 8999999999999999999999977777776
No 222
>PLN02151 trehalose-phosphatase
Probab=90.41 E-value=0.45 Score=46.26 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=46.9
Q ss_pred cCCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHH
Q 042485 144 REGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKM 204 (332)
Q Consensus 144 ~~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l 204 (332)
...+.+|+||+||||+.-...+ ....+-|.+.+-|+.|.+.+.++|-|--...-++..+
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P--~~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~~ 153 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDP--DRAFMSKKMRNTVRKLAKCFPTAIVSGRCREKVSSFV 153 (354)
T ss_pred cCCceEEEEecCccCCCCCCCc--ccccCCHHHHHHHHHHhcCCCEEEEECCCHHHHHHHc
Confidence 3456788999999999554322 3356789999999999998999999998888877765
No 223
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=89.88 E-value=0.17 Score=46.13 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=45.3
Q ss_pred CCcceEEEecCCceEeccCC------------CC-------CCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHH---HH
Q 042485 145 EGKKLLVLDIDYTLFDHRST------------AE-------NPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKW---VE 201 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~------------~~-------~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~y---a~ 201 (332)
.+++.+|||+|+|+++...- .. ...-..=|+..+|++.+.+ +++|++-|.=.... ..
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~ 149 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATE 149 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHH
Confidence 67889999999999965321 00 1123577899999999998 68998888755543 33
Q ss_pred HHHHHhCC
Q 042485 202 LKMEELGV 209 (332)
Q Consensus 202 ~~l~~l~~ 209 (332)
.-|...|+
T Consensus 150 ~nL~~~G~ 157 (229)
T PF03767_consen 150 KNLKKAGF 157 (229)
T ss_dssp HHHHHHTT
T ss_pred HHHHHcCC
Confidence 34555565
No 224
>PRK06437 hypothetical protein; Provisional
Probab=89.67 E-value=1.6 Score=31.79 Aligned_cols=54 Identities=6% Similarity=0.046 Sum_probs=40.0
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 23 SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 23 ~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+++.-.++++...||.+|-+. .|++++.-.+.. +|.... .+.-|++|++|.++-
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~v---Ng~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIV---NGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEE---CCEECC-----CceEcCCCCEEEEEe
Confidence 556677888889999988766 488877665553 788776 344678999998763
No 225
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.67 E-value=3.7 Score=31.06 Aligned_cols=71 Identities=21% Similarity=0.154 Sum_probs=54.7
Q ss_pred ceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc---CcccccccCCCCCCceEEE
Q 042485 14 EELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA---DDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 14 ~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l---~d~~~L~~~~i~~g~~l~l 86 (332)
..++|.|+. +|....-....++|+++|-.-+... |.+++.-+|+- .+.-+.+ +.+.+|.++||.+..+|++
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t-~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLS-SWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEec-CCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 357788884 6777777899999999999999875 88888888873 1123344 2357999999999888876
No 226
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=89.43 E-value=0.37 Score=44.06 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=35.2
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcE--EEEcCCc
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDI--MIWSATS 196 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yei--vI~Tas~ 196 (332)
++.+|+||+||||+.....+ .....-|++.+.|+.|.+.... +|-|.-+
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p--~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDP--DAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred CcEEEEEecCccccCCcCCC--cccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 46789999999999754332 2345678999999999987544 4555553
No 227
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.35 E-value=2.3 Score=32.11 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=48.6
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCC-CCCceEeeccCCCccc-CcccccccCCCCCCceEE
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVL-PKRQKLLYPKIGNKLA-DDTVLLSQLPLKSSLKMT 85 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp-~~~QkLl~~k~~gk~l-~d~~~L~~~~i~~g~~l~ 85 (332)
..+|.|+ ..|+.....++.++||++|.+-|....+-+ ...-.|+. -+..+.+ +++.+|.++||.+ +.|+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t-~fP~k~l~~~~~Tl~eagL~~-s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMT-AFPVKELSDESLTLKEANLLN-AVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEec-CCCCcccCCCCCcHHHCCCcC-cEEE
Confidence 4568888 467888889999999999999999876532 23445542 1123434 4578999999985 4443
No 228
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=88.53 E-value=3.1 Score=30.46 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=39.6
Q ss_pred EEEEeCCe--EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 18 LTVKWSGK--EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 18 i~vk~~g~--~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
++|+..|+ ...+++++..||.+|-+++ +++++.-.+. . +|..... +.-|++|+.|-++
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~--v-Ng~iv~~-----~~~l~~gD~Veii 64 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAK--V-NGKVALE-----DDPVKDGDYVEVI 64 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEE--E-CCEECCC-----CcCcCCCCEEEEE
Confidence 45555555 6678888999999998776 7776542222 2 6776643 4557999998876
No 229
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=88.53 E-value=2 Score=32.79 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=33.5
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLP 52 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~ 52 (332)
|+|++.++|..+.+.++++.+..+|++.|....++..
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~ 37 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDD 37 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCC
Confidence 4677789999999999999999999999999999864
No 230
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=88.41 E-value=2.3 Score=35.23 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=47.5
Q ss_pred CcceEEEecCCceEeccCC---------------CCCCceecCCcHHHHHHHHHh-CCcEEEEcCC-cHHHHHHHHHHhC
Q 042485 146 GKKLLVLDIDYTLFDHRST---------------AENPLQLMRPYLHEFLTAAYA-EYDIMIWSAT-SMKWVELKMEELG 208 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~---------------~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas-~~~ya~~~l~~l~ 208 (332)
...+.+||||+||+-+--. ..+.....-|.....|..|++ ..++++.|.+ .+.+|...|+.+.
T Consensus 4 ~p~~~~fdldytiwP~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fk 83 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFK 83 (144)
T ss_pred CCceeEEeccceeeeEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhc
Confidence 4567889999998854221 113456678889999999998 6899988876 4679999988775
Q ss_pred C
Q 042485 209 V 209 (332)
Q Consensus 209 ~ 209 (332)
+
T Consensus 84 v 84 (144)
T KOG4549|consen 84 V 84 (144)
T ss_pred c
Confidence 4
No 231
>PLN02580 trehalose-phosphatase
Probab=88.28 E-value=0.88 Score=44.77 Aligned_cols=59 Identities=22% Similarity=0.071 Sum_probs=47.9
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHH
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKME 205 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~ 205 (332)
.++.+|+||.||||..-...+ ....+-|.+.+-|+.|.+.+.++|-|--...-++..+.
T Consensus 117 ~k~~~LfLDyDGTLaPIv~~P--d~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 117 GKKIALFLDYDGTLSPIVDDP--DRALMSDAMRSAVKNVAKYFPTAIISGRSRDKVYELVG 175 (384)
T ss_pred cCCeEEEEecCCccCCCCCCc--ccccCCHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHhC
Confidence 356788899999998655433 34667789999999999999999999999888877653
No 232
>PLN03017 trehalose-phosphatase
Probab=88.18 E-value=0.83 Score=44.60 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=43.4
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHH
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELK 203 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~ 203 (332)
.++.+|+||+||||+.-...+ ....+-|.+.+-|+.|.+++.++|-|--...-+...
T Consensus 109 ~k~~llflD~DGTL~Piv~~p--~~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l~~~ 165 (366)
T PLN03017 109 GKQIVMFLDYDGTLSPIVDDP--DKAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKVYNF 165 (366)
T ss_pred CCCeEEEEecCCcCcCCcCCc--ccccCCHHHHHHHHHHhcCCcEEEEeCCCHHHHHHh
Confidence 356788889999999433211 123567889999999999899999998888777765
No 233
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=88.13 E-value=0.76 Score=48.95 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=45.1
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh--CCcEEEEcCCcHHHHHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA--EYDIMIWSATSMKWVELKME 205 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~--~yeivI~Tas~~~ya~~~l~ 205 (332)
.+++++||+||||+.....+ .....-|.+.+.|+.|.+ +..++|.|.-+...++..+.
T Consensus 491 ~~rLi~~D~DGTL~~~~~~~--~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~ 550 (726)
T PRK14501 491 SRRLLLLDYDGTLVPFAPDP--ELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFG 550 (726)
T ss_pred cceEEEEecCccccCCCCCc--ccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhC
Confidence 57899999999999753221 123456789999999998 68899999999888877654
No 234
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=88.04 E-value=1.5 Score=42.29 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=62.3
Q ss_pred ceEEEEEEeCC-eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccC-c-ccccccCCCCCCceEEEEecC
Q 042485 14 EELTLTVKWSG-KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLAD-D-TVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 14 ~~i~i~vk~~g-~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~-d-~~~L~~~~i~~g~~l~l~gs~ 90 (332)
|.++|.+..++ +.+++++..+....+|++.++..+|+..+.--|++ ++..+. + ...|.++|++.|+.+++=+..
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~---n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIY---NPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhccc---CCCccccchhhhhhhcccccceeEeccCCC
Confidence 44566666555 45779999999999999999999999999998886 555554 3 578999999999999988766
Q ss_pred CCc
Q 042485 91 EDE 93 (332)
Q Consensus 91 ~~~ 93 (332)
.+.
T Consensus 78 ~d~ 80 (380)
T KOG0012|consen 78 SDP 80 (380)
T ss_pred CCC
Confidence 664
No 235
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=87.31 E-value=1.1 Score=39.82 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=58.3
Q ss_pred ecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCC--ceEEEEecCCceEEEe----eCCCCCccccccc
Q 042485 171 LMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPN--YKITALLDHLAMITVQ----SDSRGIFDCKPLG 243 (332)
Q Consensus 171 ~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~--~~~~~~~d~~~~~~~~----~~~~g~~~~KdL~ 243 (332)
.+-||+.||...|++ +..+++-|-+-...++++-.+||+....- ..+.| |.+.-+.-. ...++...-+-+.
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~f--d~~Gk~~gfd~~~ptsdsggKa~~i~ 165 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLF--DKDGKYLGFDTNEPTSDSGGKAEVIA 165 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeee--ccCCcccccccCCccccCCccHHHHH
Confidence 467899999999998 79999999999999999999998853111 12222 221111100 0011111113344
Q ss_pred cccccCCCcCCCCcEEEEeCCcccccc
Q 042485 244 LIWDQFPEFYSSKNTIMFDDLRRNFVM 270 (332)
Q Consensus 244 ~i~~~~~~~~~~~~~iivDD~~~~~~~ 270 (332)
.+.. + ++-+.+++|=|-.--..+
T Consensus 166 ~lrk---~-~~~~~~~mvGDGatDlea 188 (227)
T KOG1615|consen 166 LLRK---N-YNYKTIVMVGDGATDLEA 188 (227)
T ss_pred HHHh---C-CChheeEEecCCcccccc
Confidence 4433 4 588899999887655444
No 236
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=86.87 E-value=0.47 Score=43.63 Aligned_cols=61 Identities=28% Similarity=0.305 Sum_probs=37.7
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHH-HHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCc
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLT-AAYAEYDIMIWSATSMKWVELKMEELGVLTNPNY 215 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~-~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~ 215 (332)
+.+|+-||||||+.. ....+.-+.++|+ ......-+++-|.-+..-+..++.+.++. .|++
T Consensus 2 ~~ll~sDlD~Tl~~~-------~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~-~Pd~ 63 (247)
T PF05116_consen 2 PRLLASDLDGTLIDG-------DDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLP-QPDY 63 (247)
T ss_dssp SEEEEEETBTTTBHC-------HHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-E-E-SE
T ss_pred CEEEEEECCCCCcCC-------CHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCC-CCCE
Confidence 578999999999911 1123344555555 22235677888888888888888877663 4553
No 237
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=86.60 E-value=3 Score=31.78 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=32.9
Q ss_pred EEEEEEeCCeEEEEEecC--CCCHHHHHHHHHHHhCCC
Q 042485 16 LTLTVKWSGKEYTVRVCG--DDSVAELKRRICELTNVL 51 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~--~~tV~~LK~~I~~~tgvp 51 (332)
|+|++.++|.+..+.+++ +.|..+|++.|....+++
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 478888999999999988 669999999999999999
No 238
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=85.74 E-value=2.6 Score=31.29 Aligned_cols=43 Identities=23% Similarity=0.250 Sum_probs=35.4
Q ss_pred EEEEEEeCCeEEEEEec-CCCCHHHHHHHHHHHhCCCCCCceEe
Q 042485 16 LTLTVKWSGKEYTVRVC-GDDSVAELKRRICELTNVLPKRQKLL 58 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~-~~~tV~~LK~~I~~~tgvp~~~QkLl 58 (332)
++|++.++|..+.+.++ .+.|..+|+++|.+..+.+...-.|-
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~ 44 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLK 44 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEE
Confidence 35778888988899988 99999999999999999887333333
No 239
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=85.50 E-value=1.9 Score=44.63 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=71.9
Q ss_pred CCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecC
Q 042485 145 EGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDH 223 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~ 223 (332)
.+...+.++.|++++..-. .....||+..+++++|++ +++++|-|.....+++.+++++|+. ++..
T Consensus 383 ~g~~~~~~~~~~~~~g~~~----~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~---------~~~~ 449 (562)
T TIGR01511 383 QGSTSVLVAVNGELAGVFA----LEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN---------VRAE 449 (562)
T ss_pred CCCEEEEEEECCEEEEEEE----ecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc---------EEcc
Confidence 3566677888888875432 234689999999999998 6999999999999999999999882 2211
Q ss_pred CceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 224 LAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 224 ~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
. .+...... +..+ .. ..+++++|-|...-..+-...++.|
T Consensus 450 --~----~p~~K~~~---v~~l----~~--~~~~v~~VGDg~nD~~al~~A~vgi 489 (562)
T TIGR01511 450 --V----LPDDKAAL---IKEL----QE--KGRVVAMVGDGINDAPALAQADVGI 489 (562)
T ss_pred --C----ChHHHHHH---HHHH----HH--cCCEEEEEeCCCccHHHHhhCCEEE
Confidence 0 01111011 1222 12 5678999999976666555556654
No 240
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=85.40 E-value=1.1 Score=40.60 Aligned_cols=54 Identities=19% Similarity=0.251 Sum_probs=38.1
Q ss_pred eEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 149 LLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
++++||||||++... . ..| +.+-++...++..++|-|.-+..-+..++..+++.
T Consensus 1 li~~DlDgTLl~~~~-----~--~~~-~~~~~~~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 1 LIITDLDNTLLGDDE-----G--LAS-FVELLRGSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred CeEEeccccccCCHH-----H--HHH-HHHHHHhcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 478999999997432 1 122 22555533346889999999999999998887763
No 241
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.37 E-value=1.3 Score=42.21 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=47.6
Q ss_pred EEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcc-----cCcccccccCCCCCCceEEE
Q 042485 28 TVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKL-----ADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 28 ~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~-----l~d~~~L~~~~i~~g~~l~l 86 (332)
..-++-.-||.||+..+..+-||.+.++||+++.-.|+. .+-+++|-.++|.+|+.+.+
T Consensus 351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 356677889999999999999999999999986545543 22356888899999998875
No 242
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=84.58 E-value=4.9 Score=31.12 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=39.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccC-CCc-cc-CcccccccCCCCCCceEEE
Q 042485 26 EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKI-GNK-LA-DDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 26 ~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~-~gk-~l-~d~~~L~~~~i~~g~~l~l 86 (332)
.++..++..+||+.+...+.++..| ++.-+|-...- ++- +| +.+.||.++||.+|..|+|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLI 77 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEE
Confidence 5667789999999999999999999 55577743110 111 24 4457999999999997764
No 243
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=84.04 E-value=1.7 Score=32.62 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=40.3
Q ss_pred ecCCCCHHHHHHHHHHHhC-CCCCCceEeeccCCCcccCcccccccC-CCCCCceEEEE
Q 042485 31 VCGDDSVAELKRRICELTN-VLPKRQKLLYPKIGNKLADDTVLLSQL-PLKSSLKMTMI 87 (332)
Q Consensus 31 v~~~~tV~~LK~~I~~~tg-vp~~~QkLl~~k~~gk~l~d~~~L~~~-~i~~g~~l~l~ 87 (332)
|+++++|.|+++.|..... ..-..=.|.+ +|..+++...|+++ |+++|.+|.|+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~---~g~~L~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEH---NGQRLDDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEE---CCCccCCchhhhhhhCCCCCcEEEEE
Confidence 5788999999999987643 3333344443 68888888888886 68889988887
No 244
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=83.89 E-value=2.3 Score=39.90 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=42.4
Q ss_pred CCcceEEEecCCceEeccC-------CCCC--------C-----ceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHH
Q 042485 145 EGKKLLVLDIDYTLFDHRS-------TAEN--------P-----LQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELK 203 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~-------~~~~--------~-----~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~ 203 (332)
.++..+|||+|+|+++... ..+. . ....=|+..+|++++.+ +++|++.|.=....-+.-
T Consensus 99 ~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT 178 (275)
T TIGR01680 99 HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVT 178 (275)
T ss_pred CCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHH
Confidence 3789999999999995422 1010 1 12356899999999987 799999998876554433
Q ss_pred H
Q 042485 204 M 204 (332)
Q Consensus 204 l 204 (332)
+
T Consensus 179 ~ 179 (275)
T TIGR01680 179 E 179 (275)
T ss_pred H
Confidence 3
No 245
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=83.35 E-value=8.1 Score=38.92 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=56.6
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCC----CCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNV----LPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgv----p~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
..|+|....+..++-++.+..|.||--.|-+..|= +.....-...+.+|.+++.+.+|.+.||.+|+.++|.-
T Consensus 3 ~RVtV~~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 3 CRVTVLAGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEEeeCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 46777777778889999999999999999998874 12222211123378899999999999999999999873
No 246
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=82.76 E-value=1.5 Score=37.69 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=35.9
Q ss_pred eEEEecCCceEeccCCC----CCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHH
Q 042485 149 LLVLDIDYTLFDHRSTA----ENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMK 198 (332)
Q Consensus 149 ~LVLDLD~TLi~~~~~~----~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ 198 (332)
.+|.|+||||--|.... .-..-+.+||+.++...+.+ .|.++--|+-.-.
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~ 55 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPIG 55 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHH
Confidence 37889999999774211 01123799999999999998 5887766665533
No 247
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=82.62 E-value=5.5 Score=28.53 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=40.2
Q ss_pred EEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 19 TVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 19 ~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+|..+|+.+.+ + ..|+.+|.+.+ +++++.-.+-. ++.... ...+.+..|++|+.|-++-
T Consensus 2 ~i~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavav---N~~iv~-~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 2 KLFVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAV---NGELVH-KEARAQFVLHEGDRIEILS 60 (65)
T ss_pred EEEECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEE---CCEEcC-HHHcCccccCCCCEEEEEE
Confidence 46678887777 3 45899988775 66664433332 676654 3466777899999998774
No 248
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=80.29 E-value=2.6 Score=41.25 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=41.1
Q ss_pred ccCCCcCCcceEEEecCCceEeccCCCC-----CCceecCCcHHHHHHHHHh-CCcEEEEcCCc
Q 042485 139 LRNPSREGKKLLVLDIDYTLFDHRSTAE-----NPLQLMRPYLHEFLTAAYA-EYDIMIWSATS 196 (332)
Q Consensus 139 ~l~~~~~~kk~LVLDLD~TLi~~~~~~~-----~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~ 196 (332)
...--..+.|...||||||||++..... .-+...-|.+-.=|+.+++ .|.++|+|...
T Consensus 67 ~~~~v~~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 67 TLPKVNGGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred eccccCCCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence 3334455889999999999999987421 2234455555566777776 79999999764
No 249
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=79.46 E-value=9.5 Score=29.60 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=53.7
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceE
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKM 84 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l 84 (332)
-|.+.|. ..|.+.-+.+-.++|..-|-...+...|-....-++++ .|+-.+-+.+=.+++...|+-|
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~---dG~rI~~dqTP~dldmEdnd~i 91 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLF---DGKRIDLDQTPGDLDMEDNDEI 91 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEE---cceecCCCCChhhcCCccchHH
Confidence 4667777 45666777888999999999999999999999999998 8887766677777777766544
No 250
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=79.41 E-value=8.6 Score=29.89 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=35.3
Q ss_pred EEEEEeCCeEEEEEecC-----CCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 17 TLTVKWSGKEYTVRVCG-----DDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 17 ~i~vk~~g~~~~i~v~~-----~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
.|+|+++|....+.++. +.+..+|+++|.+..++++..+-.+.
T Consensus 2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~ 49 (91)
T cd06398 2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLT 49 (91)
T ss_pred EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEE
Confidence 57888999888888774 79999999999999999985555443
No 251
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=78.80 E-value=8.2 Score=29.30 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=37.1
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 17 TLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 17 ~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
+++|+++|..-.+.++..-|-..|+++|+.+.++|+..--|-|
T Consensus 2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 5788999998888898999999999999999999998644444
No 252
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=78.72 E-value=8.8 Score=28.23 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=37.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCC---CCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 26 EYTVRVCGDDSVAELKRRICELTNV---LPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 26 ~~~i~v~~~~tV~~LK~~I~~~tgv---p~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
...++++...||.+|.+.|....+- .......+.. +|+... .+..|++|+.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~v--Ng~~v~-----~~~~l~~gD~v~i~ 74 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAV--NGEYVR-----LDTPLKDGDEVAII 74 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEE--CCeEcC-----CCcccCCCCEEEEe
Confidence 4567888899999999999987642 0111222222 677665 34568999999887
No 253
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=78.32 E-value=5 Score=30.07 Aligned_cols=66 Identities=12% Similarity=0.216 Sum_probs=39.5
Q ss_pred EEEEEEe-C------C-eEEEEEecCCCCHHHHHHHHHHHhC-CCCCCceEeeccCCCcccCcccccccCCCCCCceEEE
Q 042485 16 LTLTVKW-S------G-KEYTVRVCGDDSVAELKRRICELTN-VLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 16 i~i~vk~-~------g-~~~~i~v~~~~tV~~LK~~I~~~tg-vp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l 86 (332)
|+|+|++ + | ....++++...||.+|.+.|..... ...-++...... +|....+ +.-|++|+.|-+
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vav-N~~~v~~-----~~~l~dgDeVai 75 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLAL-NEEYTTE-----SAALKDGDELAI 75 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEE-CCEEcCC-----CcCcCCCCEEEE
Confidence 4567763 1 3 4466788889999999999976641 111011111112 5665433 335788999887
Q ss_pred E
Q 042485 87 I 87 (332)
Q Consensus 87 ~ 87 (332)
+
T Consensus 76 ~ 76 (82)
T PLN02799 76 I 76 (82)
T ss_pred e
Confidence 6
No 254
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=78.23 E-value=12 Score=28.57 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=42.8
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+.+.+..+|+.+.+ +...||.+|-+. .++++..--+-. +|..+. ...+++.-|++|++|-++-
T Consensus 17 ~~m~I~VNG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVev---Ng~iVp-r~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 17 VLITISINDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAI---NNQVVP-RSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ceEEEEECCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEE---CCEEeC-HHHcCcccCCCCCEEEEEE
Confidence 34566777886655 567788877665 377765444432 676663 3567888899999998763
No 255
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=77.52 E-value=1.3 Score=42.24 Aligned_cols=63 Identities=24% Similarity=0.270 Sum_probs=48.4
Q ss_pred CceEEEEEEeCCeEEE---EEecCCCCHHHHHHHHHHHhC--CCCCCceEeeccCCCcccCcccccccCCC
Q 042485 13 SEELTLTVKWSGKEYT---VRVCGDDSVAELKRRICELTN--VLPKRQKLLYPKIGNKLADDTVLLSQLPL 78 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~---i~v~~~~tV~~LK~~I~~~tg--vp~~~QkLl~~k~~gk~l~d~~~L~~~~i 78 (332)
+..+++.+|...++|. |+.+..-||++||..++...- =.+..|||+| .||++.|...|++.=.
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliY---sgkllld~qcl~d~lr 74 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIY---SGKLLLDHQCLTDWLR 74 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHh---hccccccchhHHHHHH
Confidence 3457888887766664 556777899999999988743 3456799999 9999999888887643
No 256
>PLN02382 probable sucrose-phosphatase
Probab=77.01 E-value=5.3 Score=39.70 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=35.0
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPN 214 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~ 214 (332)
.+.+|+.||||||+++... ...-.+-+...++.+++ .--+++.|.-+..-+..+++++.+. .|.
T Consensus 8 ~~~lI~sDLDGTLL~~~~~----~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~-~p~ 72 (413)
T PLN02382 8 PRLMIVSDLDHTMVDHHDP----ENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLL-TPD 72 (413)
T ss_pred CCEEEEEcCCCcCcCCCCc----cchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCC-CCC
Confidence 4678888999999976311 00111223333345555 3455555555555556666666543 444
No 257
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=76.12 E-value=8.6 Score=29.64 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=33.2
Q ss_pred eEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 042485 15 ELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVL 51 (332)
Q Consensus 15 ~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp 51 (332)
.|+|.|.++|....+.++++.+..+|.++|.+..|+.
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3667777899999999999999999999999999984
No 258
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=76.00 E-value=4.9 Score=43.78 Aligned_cols=55 Identities=22% Similarity=0.122 Sum_probs=41.5
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh--CCcEEEEcCCcHHHHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA--EYDIMIWSATSMKWVELKM 204 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~--~yeivI~Tas~~~ya~~~l 204 (332)
.+++|+||+||||+..... ....-|.+.+.|+.|.. ...++|.|.-...-++..+
T Consensus 595 ~~rlI~LDyDGTLlp~~~~----~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f 651 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASI----DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWF 651 (854)
T ss_pred cCeEEEEecCCcccCCccc----cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHh
Confidence 5789999999999955421 12344689999999854 5788888888887777765
No 259
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=75.80 E-value=9.7 Score=28.78 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=31.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 042485 26 EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60 (332)
Q Consensus 26 ~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~ 60 (332)
++.|.++...+..+|.++|+++.+.++++-+|-|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 45578899999999999999999999999999984
No 260
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=75.28 E-value=7.4 Score=40.92 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=38.4
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
+.|.-......+.+-++++.|+..|++.|+..||||...|-|++
T Consensus 316 vhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~ 359 (732)
T KOG4250|consen 316 VHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLF 359 (732)
T ss_pred eEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeee
Confidence 44444456777888999999999999999999999999999997
No 261
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=74.81 E-value=5.1 Score=43.29 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=45.7
Q ss_pred CcceEEEecCCceEeccCCC-CCCceecCCcHHHHHHHHHhC--CcEEEEcCCcHHHHHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTA-ENPLQLMRPYLHEFLTAAYAE--YDIMIWSATSMKWVELKME 205 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~-~~~~~~~RP~l~eFL~~l~~~--yeivI~Tas~~~ya~~~l~ 205 (332)
.+.+|+||.||||+...... .......-|++.+-|+.|.+. -.|+|-|.-+..-++..+.
T Consensus 506 ~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~ 568 (797)
T PLN03063 506 NNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFG 568 (797)
T ss_pred cCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhC
Confidence 46789999999999653322 123355678999999999974 7899999988888887763
No 262
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=73.85 E-value=3.5 Score=35.33 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 174 PYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 174 P~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
|++.+||+.+.+ +++++|-|++...+++.+++.+|+.
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 444599999865 8999999999999999999988874
No 263
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=73.35 E-value=6.3 Score=43.23 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=45.6
Q ss_pred CcceEEEecCCceEeccCCCCC-------CceecCCcHHHHHHHHHhC--CcEEEEcCCcHHHHHHHHH
Q 042485 146 GKKLLVLDIDYTLFDHRSTAEN-------PLQLMRPYLHEFLTAAYAE--YDIMIWSATSMKWVELKME 205 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~-------~~~~~RP~l~eFL~~l~~~--yeivI~Tas~~~ya~~~l~ 205 (332)
.+.+|+||.||||+.....+.. .....-|.+.+.|+.|... ..|+|-|--...-++..+.
T Consensus 590 ~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg 658 (934)
T PLN03064 590 NNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFG 658 (934)
T ss_pred cceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhC
Confidence 4678999999999976443321 1233557899999999974 7899999999988888764
No 264
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=72.85 E-value=8 Score=39.88 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=73.3
Q ss_pred cCCcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-C-CcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEe
Q 042485 144 REGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-E-YDIMIWSATSMKWVELKMEELGVLTNPNYKITALL 221 (332)
Q Consensus 144 ~~~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~-yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~ 221 (332)
..+...+.+..||+++-.-. .....|||+.+.|++|++ + +.++|-|.....+++.+++++|+. .++
T Consensus 361 ~~g~~~~~v~~~~~~~g~i~----~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~--------~~f 428 (556)
T TIGR01525 361 SQGKTVVFVAVDGELLGVIA----LRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID--------EVH 428 (556)
T ss_pred hCCcEEEEEEECCEEEEEEE----ecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC--------eee
Confidence 34666777888887774432 234699999999999987 7 999999999999999999999883 222
Q ss_pred cCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 222 DHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 222 d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
.+ . .+... .+-+..+ .. ..+++++|-|...-..+-...|+-|
T Consensus 429 ~~--~----~p~~K---~~~v~~l----~~--~~~~v~~vGDg~nD~~al~~A~vgi 470 (556)
T TIGR01525 429 AE--L----LPEDK---LAIVKEL----QE--EGGVVAMVGDGINDAPALAAADVGI 470 (556)
T ss_pred cc--C----CHHHH---HHHHHHH----HH--cCCEEEEEECChhHHHHHhhCCEeE
Confidence 21 0 01111 1112222 11 4569999999987766655566544
No 265
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=72.23 E-value=18 Score=25.71 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=40.9
Q ss_pred EEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 19 TVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 19 ~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
++..+|+.+ +++...||.+|-+. .|+++++-.+-. +|..... ..+.+.-|++|++|-++-
T Consensus 2 ~i~vNG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~v---Ng~iv~r-~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 2 NIQLNGEPR--ELPDGESVAALLAR----EGLAGRRVAVEV---NGEIVPR-SQHASTALREGDVVEIVH 61 (66)
T ss_pred EEEECCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEE---CCeEeCH-HHcCcccCCCCCEEEEEE
Confidence 466778865 55677898887655 588887766653 6755542 245566689999988763
No 266
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=71.79 E-value=5.8 Score=38.50 Aligned_cols=40 Identities=18% Similarity=0.271 Sum_probs=36.7
Q ss_pred CceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHh
Q 042485 168 PLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEEL 207 (332)
Q Consensus 168 ~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l 207 (332)
-++..-|++.++|+.+.+ ++.++|.|++...|++.+|+.+
T Consensus 181 ~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l 221 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYL 221 (343)
T ss_pred HHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 357779999999999998 6999999999999999999986
No 267
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=71.44 E-value=4.5 Score=36.60 Aligned_cols=50 Identities=30% Similarity=0.250 Sum_probs=31.5
Q ss_pred EEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCc--EEEEcCCcHHHHHH
Q 042485 151 VLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYD--IMIWSATSMKWVEL 202 (332)
Q Consensus 151 VLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~ye--ivI~Tas~~~ya~~ 202 (332)
.||.||||......+ .....-|++.+.|+.|..... ++|-|.-+....+.
T Consensus 1 ~lDyDGTL~p~~~~p--~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~ 52 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDP--DAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLER 52 (235)
T ss_dssp EEE-TTTSS---S-G--GG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHH
T ss_pred CcccCCccCCCCCCc--cccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHH
Confidence 589999999775532 346678899999999999765 89999888877443
No 268
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=71.33 E-value=15 Score=26.13 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=36.8
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 22 WSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 22 ~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
.+|+.+. ++...||.+|.+.+ +++++.--+.. +|..... ..+.+.-|++|+.|-++
T Consensus 3 iNg~~~~--~~~~~tv~~ll~~l----~~~~~~v~v~v---N~~iv~~-~~~~~~~L~~gD~veii 58 (64)
T TIGR01683 3 VNGEPVE--VEDGLTLAALLESL----GLDPRRVAVAV---NGEIVPR-SEWDDTILKEGDRIEIV 58 (64)
T ss_pred ECCeEEE--cCCCCcHHHHHHHc----CCCCCeEEEEE---CCEEcCH-HHcCceecCCCCEEEEE
Confidence 4566554 46678999988864 56665444332 6766532 34566678999998876
No 269
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=71.02 E-value=17 Score=27.00 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=35.9
Q ss_pred EEEEecCC-CCHHHHHHHHHHHhC-CCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 27 YTVRVCGD-DSVAELKRRICELTN-VLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 27 ~~i~v~~~-~tV~~LK~~I~~~tg-vp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
..++++.+ +||.+|.+.|.+..+ .-..+..++... +|+...+ +..|++|+.|-++
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~v-n~~~v~~-----~~~l~dgDevai~ 74 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAV-NEEYVTD-----DALLNEGDEVAFI 74 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEE-CCEEcCC-----CcCcCCCCEEEEe
Confidence 46788876 999999999988864 111112222122 5666543 4568999999877
No 270
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=70.85 E-value=7.7 Score=33.43 Aligned_cols=64 Identities=22% Similarity=0.246 Sum_probs=46.3
Q ss_pred CCcceEEEecCCceEeccCC--CCC---CceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 145 EGKKLLVLDIDYTLFDHRST--AEN---PLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 145 ~~kk~LVLDLD~TLi~~~~~--~~~---~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
+.-++|+||.||||.|..-- ..+ -.+..|.|.- ++.+.+ ..+++|-|.-...-++.-++.||+.
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~G--ik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~ 75 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHG--IKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK 75 (170)
T ss_pred hhceEEEEeccceeecCeEEEcCCCceeeeeeccCcHH--HHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc
Confidence 46789999999999987431 111 1234566543 344444 7999999999999999999999884
No 271
>PRK07440 hypothetical protein; Provisional
Probab=69.64 E-value=24 Score=25.82 Aligned_cols=61 Identities=11% Similarity=0.269 Sum_probs=41.6
Q ss_pred EEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 18 LTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 18 i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
++++.+|+. ++++...||.+|-+. .+++++.--+-. +|....- ..+.+.-|++|++|-++-
T Consensus 5 m~i~vNG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~~---N~~iv~r-~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 5 ITLQVNGET--RTCSSGTSLPDLLQQ----LGFNPRLVAVEY---NGEILHR-QFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred eEEEECCEE--EEcCCCCCHHHHHHH----cCCCCCeEEEEE---CCEEeCH-HHcCceecCCCCEEEEEE
Confidence 667778886 455678899987654 466665444432 6766542 467777899999988764
No 272
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=69.03 E-value=20 Score=25.67 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=39.2
Q ss_pred EEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 19 TVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 19 ~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+|..+|+.+.+ ++..|+.+|-+. .|+++..-.+-. .+..... ..++.. |++|++|-++-
T Consensus 2 ~i~vNG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~---N~~iv~r-~~~~~~-L~~gD~ieIv~ 60 (65)
T PRK05863 2 IVVVNEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAV---DWSVLPR-SDWATK-LRDGARLEVVT 60 (65)
T ss_pred EEEECCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEE---CCcCcCh-hHhhhh-cCCCCEEEEEe
Confidence 45567876655 467888877655 588887777664 5655432 234454 89999998763
No 273
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=68.50 E-value=16 Score=26.00 Aligned_cols=59 Identities=14% Similarity=0.263 Sum_probs=39.7
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 20 VKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 20 vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+..+|+.+. ++...||.+|.+++ +++++.-.+.. +|+.... ..+++.-|++|++|-++-
T Consensus 2 i~iNg~~~~--~~~~~tv~~ll~~l----~~~~~~i~V~v---Ng~~v~~-~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 2 ITVNGEPRE--VEEGATLAELLEEL----GLDPRGVAVAL---NGEIVPR-SEWASTPLQDGDRIEIVT 60 (65)
T ss_pred EEECCeEEE--cCCCCCHHHHHHHc----CCCCCcEEEEE---CCEEcCH-HHcCceecCCCCEEEEEE
Confidence 344566554 45678999988776 46666555443 7876643 455666789999998763
No 274
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=68.12 E-value=4.4 Score=35.68 Aligned_cols=103 Identities=12% Similarity=0.064 Sum_probs=57.4
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHH------HHHhCCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEe
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLT------AAYAEYDIMIWSATSMKWVELKMEELGVLTNPNYKITALL 221 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~------~l~~~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~ 221 (332)
-.+-||+|.|++.++........+.-||-++||+ .+.+.++=. +-.+++|..+++ +...+...++|+-
T Consensus 64 i~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~---SIPKevA~qLI~---MHq~RGD~i~FvT 137 (237)
T COG3700 64 IAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEF---SIPKEVARQLID---MHQRRGDAIYFVT 137 (237)
T ss_pred eeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccc---cchHHHHHHHHH---HHHhcCCeEEEEe
Confidence 3688999999999987554555677888887764 444544321 225667766553 2223344566665
Q ss_pred cCCceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccc
Q 042485 222 DHLAMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRN 267 (332)
Q Consensus 222 d~~~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~ 267 (332)
.|+.-- ..+ ..|-|..-|. - -++.-+++.-|.++-
T Consensus 138 GRt~gk-----~d~--vsk~Lak~F~---i-~~m~pv~f~Gdk~k~ 172 (237)
T COG3700 138 GRTPGK-----TDT--VSKTLAKNFH---I-TNMNPVIFAGDKPKP 172 (237)
T ss_pred cCCCCc-----ccc--cchhHHhhcc---c-CCCcceeeccCCCCc
Confidence 543210 011 1244443322 1 155666777777743
No 275
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=66.94 E-value=27 Score=25.62 Aligned_cols=60 Identities=18% Similarity=0.327 Sum_probs=40.9
Q ss_pred EEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 18 LTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 18 i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
+++..+|+. ++++...|+.||-++ .|++++.--... +|.+... ..+.+.-+++|+.|-++
T Consensus 3 m~i~~ng~~--~e~~~~~tv~dLL~~----l~~~~~~vav~v---Ng~iVpr-~~~~~~~l~~gD~ievv 62 (68)
T COG2104 3 MTIQLNGKE--VEIAEGTTVADLLAQ----LGLNPEGVAVAV---NGEIVPR-SQWADTILKEGDRIEVV 62 (68)
T ss_pred EEEEECCEE--EEcCCCCcHHHHHHH----hCCCCceEEEEE---CCEEccc-hhhhhccccCCCEEEEE
Confidence 445555664 556666999998766 677776555554 7877653 34667778999998766
No 276
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=66.64 E-value=7.7 Score=39.60 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=20.1
Q ss_pred CcEEEEcCCcHHHHHHHHHH-hCCC
Q 042485 187 YDIMIWSATSMKWVELKMEE-LGVL 210 (332)
Q Consensus 187 yeivI~Tas~~~ya~~~l~~-l~~~ 210 (332)
-+.+|-|++...|+++.+++ ||+.
T Consensus 123 g~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 123 GKRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred CCEEEEECCcHHHHHHHHHHcCCCC
Confidence 34699999999999999976 6764
No 277
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=66.58 E-value=15 Score=28.84 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=45.5
Q ss_pred EEEEeCCeEE-EEEecCCCCHHHHHHHHHHHhCCCCCC-ceEeeccCCCc--ccC-ccc-------ccccCCCCCCceEE
Q 042485 18 LTVKWSGKEY-TVRVCGDDSVAELKRRICELTNVLPKR-QKLLYPKIGNK--LAD-DTV-------LLSQLPLKSSLKMT 85 (332)
Q Consensus 18 i~vk~~g~~~-~i~v~~~~tV~~LK~~I~~~tgvp~~~-QkLl~~k~~gk--~l~-d~~-------~L~~~~i~~g~~l~ 85 (332)
|.|=-...+| ++.++.++||.++-.+|..++.+++.. -+|+ ++.+|. +|. .+. .|...|-++.+.|.
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~-l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~ 83 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS-LKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRIE 83 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE-EEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcHH
Confidence 3444445554 589999999999999999999998843 3443 442332 232 222 35556666666666
Q ss_pred EEec
Q 042485 86 MIGT 89 (332)
Q Consensus 86 l~gs 89 (332)
.||-
T Consensus 84 ~lGr 87 (97)
T cd01775 84 DIGR 87 (97)
T ss_pred HhCc
Confidence 6653
No 278
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=66.51 E-value=7.7 Score=33.63 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=46.8
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
+...+++..+.+++.... .....||++.++|++|++ ++.++|.|......+..+.+++|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~----~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi 166 (215)
T PF00702_consen 106 GRTVIVLAVNLIFLGLFG----LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGI 166 (215)
T ss_dssp HHHCEEEEESHEEEEEEE----EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTS
T ss_pred CCcccceeecCeEEEEEe----ecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccc
Confidence 334444444666664421 335689999999999998 599999999999999999999988
No 279
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=66.12 E-value=10 Score=27.59 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=41.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 26 EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 26 ~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
...+.++...||.+|.++|.....-...++.+.... +|....+ ...+..|++|+.|.++=
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~v-N~~~v~~--~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAV-NGEIVPD--DGLDTPLKDGDEVAILP 72 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEE-TTEEEGG--GTTTSBEETTEEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEE-CCEEcCC--ccCCcCcCCCCEEEEEC
Confidence 556788999999999999987764221222232222 7877766 35667789999999873
No 280
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=65.64 E-value=19 Score=27.74 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=31.6
Q ss_pred EEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 042485 18 LTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVLPK 53 (332)
Q Consensus 18 i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~ 53 (332)
++++ -+|..+.+.+.++..+.+|++.|.+..|+...
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 4455 47889999999999999999999999999885
No 281
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=64.12 E-value=30 Score=25.05 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=39.7
Q ss_pred EEEeCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 19 TVKWSGKEYTVRVCGD-DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 19 ~vk~~g~~~~i~v~~~-~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
++..+|+.+.+ +.. .||.+|-+. .|+++..--+-. +|..... ..+++.-|++|++|-++-
T Consensus 2 ~I~vNG~~~~~--~~~~~tv~~lL~~----l~~~~~~vav~v---N~~iv~r-~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 2 NLKINGNQIEV--PESVKTVAELLTH----LELDNKIVVVER---NKDILQK-DDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EEEECCEEEEc--CCCcccHHHHHHH----cCCCCCeEEEEE---CCEEeCH-HHcCceecCCCCEEEEEE
Confidence 45677886654 444 678877654 577766544433 6766643 467778899999988763
No 282
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=63.34 E-value=17 Score=27.62 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=41.6
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 23 SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 23 ~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
.+..+...+++.+||+++-+. .|||...-.++. . +|+..+= ++-+++|+.|.+-
T Consensus 21 r~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~-v-NG~~v~~-----~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 21 RGGPFTHPFDGGATVKDVIES----LGVPHTEVGLIL-V-NGRPVDF-----DYRLKDGDRVAVY 74 (81)
T ss_pred cCCceEEecCCCCcHHHHHHH----cCCChHHeEEEE-E-CCEECCC-----cccCCCCCEEEEE
Confidence 345677889999999997655 899999999985 3 7876542 3567899988765
No 283
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=63.12 E-value=23 Score=27.05 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=33.7
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPK 53 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~ 53 (332)
|++++.++|..+...++.+.|..+|.+++.+..+.+.+
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~ 38 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHND 38 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCC
Confidence 46777899999999999999999999999999998654
No 284
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=61.74 E-value=35 Score=25.81 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 35 DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 35 ~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
.++.+|+++..+..+|+.+--.|.--. .|-..+|+.-+..+ .++..+|++...
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~e-DGT~VddEeyF~tL--p~nT~lm~L~~g 73 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEE-DGTEVDDEEYFQTL--PDNTVLMLLEKG 73 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETT-TTCBESSCHHHCCS--SSSEEEEEEESS
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeC-CCcEEccHHHHhhC--CCCCEEEEECCC
Confidence 689999999999999998766665223 78888877777666 577777776443
No 285
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=60.96 E-value=45 Score=23.83 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=37.8
Q ss_pred EEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 19 TVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 19 ~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
++..+|+.+++ +...||.+|-+.+ +.++..-.+-. ++..... ..+++.-|++|++|-++-
T Consensus 2 ~i~vNg~~~~~--~~~~tl~~ll~~l----~~~~~~vaVav---N~~iv~r-~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 2 QILFNDQPMQC--AAGQTVHELLEQL----NQLQPGAALAI---NQQIIPR-EQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EEEECCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEE---CCEEeCh-HHcCccccCCCCEEEEEE
Confidence 45567876665 5677899887653 44443322221 5665532 346677789999998774
No 286
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=60.20 E-value=19 Score=28.21 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=34.2
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeecc
Q 042485 24 GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPK 61 (332)
Q Consensus 24 g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k 61 (332)
..+|++.|++++|=.++|+.++++.||-+..-..+..+
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k 58 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTK 58 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeC
Confidence 35799999999999999999999999999998887654
No 287
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=59.79 E-value=20 Score=36.74 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=59.8
Q ss_pred eecCCcHHHHHHHHHh-CC-cEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCCceEEEeeCCCCCccccccccccc
Q 042485 170 QLMRPYLHEFLTAAYA-EY-DIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHLAMITVQSDSRGIFDCKPLGLIWD 247 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~y-eivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~KdL~~i~~ 247 (332)
...||++.+.+++|++ ++ +++|-|+....+++.+++++|+.. ++.. . .+... .+-+..+
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~--------~f~~--~----~p~~K---~~~i~~l-- 421 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE--------VHAE--L----LPEDK---LEIVKEL-- 421 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh--------hhhc--c----CcHHH---HHHHHHH--
Confidence 3589999999999998 68 999999999999999999998841 1111 0 01111 1112222
Q ss_pred cCCCcCCCCcEEEEeCCccccccCCCCeeeec
Q 042485 248 QFPEFYSSKNTIMFDDLRRNFVMNPQNGLAIK 279 (332)
Q Consensus 248 ~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I~ 279 (332)
+ ...+++++|-|...-..+-...++-|.
T Consensus 422 ---~-~~~~~v~~vGDg~nD~~al~~A~vgia 449 (536)
T TIGR01512 422 ---R-EKYGPVAMVGDGINDAPALAAADVGIA 449 (536)
T ss_pred ---H-hcCCEEEEEeCCHHHHHHHHhCCEEEE
Confidence 2 156799999999776666555665444
No 288
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=58.26 E-value=66 Score=24.12 Aligned_cols=57 Identities=11% Similarity=0.114 Sum_probs=35.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhC-----CCCC-----CceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 25 KEYTVRVCGDDSVAELKRRICELTN-----VLPK-----RQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 25 ~~~~i~v~~~~tV~~LK~~I~~~tg-----vp~~-----~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
....++++ ..||.+|.+.|.+..+ +-.+ .+..+ .. +|.....+.. ..|++|+.|.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v-~v-N~~~v~~~~~---~~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVII-LV-NGRNVDWGLG---TELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEE-EE-CCEecCccCC---CCCCCCCEEEEe
Confidence 34667776 8999999999988763 1111 12222 11 5655543221 467899998877
No 289
>PRK01777 hypothetical protein; Validated
Probab=55.88 E-value=82 Score=24.63 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=40.0
Q ss_pred eEEEEEEeC--Ce--EEEEEecCCCCHHHHHHHHHHHhCCCCCCc------eEeeccCCCcccCcccccccCCCCCCceE
Q 042485 15 ELTLTVKWS--GK--EYTVRVCGDDSVAELKRRICELTNVLPKRQ------KLLYPKIGNKLADDTVLLSQLPLKSSLKM 84 (332)
Q Consensus 15 ~i~i~vk~~--g~--~~~i~v~~~~tV~~LK~~I~~~tgvp~~~Q------kLl~~k~~gk~l~d~~~L~~~~i~~g~~l 84 (332)
+|+|.|-+. .+ ...+++++.+||.+.-++ .|++.+.- ..++. .|+...- +.-|++|+.|
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI--~Gk~v~~-----d~~L~dGDRV 71 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGI--YSRPAKL-----TDVLRDGDRV 71 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEE--eCeECCC-----CCcCCCCCEE
Confidence 567777752 32 245789999999987665 47766632 22322 4666543 2346899998
Q ss_pred EEEe
Q 042485 85 TMIG 88 (332)
Q Consensus 85 ~l~g 88 (332)
-+.-
T Consensus 72 eIyr 75 (95)
T PRK01777 72 EIYR 75 (95)
T ss_pred EEec
Confidence 8763
No 290
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=55.73 E-value=69 Score=22.48 Aligned_cols=58 Identities=7% Similarity=0.123 Sum_probs=35.8
Q ss_pred EEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 19 TVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 19 ~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
+|..+|+.+ ++++..|+.+|-+.+ ++++. -.+.. +|..... ....+.-|++|+.|-++
T Consensus 2 ~i~vNg~~~--~~~~~~tl~~ll~~l----~~~~~-~~v~v---N~~~v~~-~~~~~~~L~~gD~vei~ 59 (65)
T PRK06944 2 DIQLNQQTL--SLPDGATVADALAAY----GARPP-FAVAV---NGDFVAR-TQHAARALAAGDRLDLV 59 (65)
T ss_pred EEEECCEEE--ECCCCCcHHHHHHhh----CCCCC-eEEEE---CCEEcCc-hhcccccCCCCCEEEEE
Confidence 456677755 456778999988776 44322 22222 6666532 23445568999999876
No 291
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=55.16 E-value=73 Score=22.57 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=36.3
Q ss_pred EEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 20 VKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 20 vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
++.+|+. +++..+.|+.+||.++..... -+++ +|-+.+++. -|++|+.|.++
T Consensus 3 I~vN~k~--~~~~~~~tl~~lr~~~k~~~D------I~I~---NGF~~~~d~-----~L~e~D~v~~I 54 (57)
T PF14453_consen 3 IKVNEKE--IETEENTTLFELRKESKPDAD------IVIL---NGFPTKEDI-----ELKEGDEVFLI 54 (57)
T ss_pred EEECCEE--EEcCCCcCHHHHHHhhCCCCC------EEEE---cCcccCCcc-----ccCCCCEEEEE
Confidence 4555654 566778899999998654332 4554 787776644 46899999887
No 292
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=53.26 E-value=43 Score=25.31 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 35 DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 35 ~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
.+..+|+.+..+..+++...-.|. +--.|-..+|+.-+..+ .++..+|+++..+
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lv-L~eDGTeVddEeYF~tL--p~nT~l~~l~~gq 74 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLV-LEEDGTEVDDEEYFQTL--PDNTVLMLLEPGQ 74 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEE-EeCCCcEEccHHHHhcC--CCCcEEEEECCCC
Confidence 589999999999999985555554 32278888887777776 5777777775443
No 293
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=52.14 E-value=6.5 Score=33.60 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=11.6
Q ss_pred EEEecCCceEecc
Q 042485 150 LVLDIDYTLFDHR 162 (332)
Q Consensus 150 LVLDLD~TLi~~~ 162 (332)
++||+||||+...
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999999876
No 294
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=51.82 E-value=63 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=19.0
Q ss_pred EEE-EecC-CCCHHHHHHHHHHH----hCCCCC
Q 042485 27 YTV-RVCG-DDSVAELKRRICEL----TNVLPK 53 (332)
Q Consensus 27 ~~i-~v~~-~~tV~~LK~~I~~~----tgvp~~ 53 (332)
+.+ .|+. +.||++|++.+.+. .|++|-
T Consensus 17 ~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pf 49 (122)
T PF10209_consen 17 LVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPF 49 (122)
T ss_pred eeeecCCcccCcHHHHHHHHHHHHhcCCCCCCc
Confidence 344 4776 99999999887665 556553
No 295
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=50.98 E-value=3.3 Score=38.19 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=39.2
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
|.+..-|.|..+-++++...+|.|.+..|+..++|.+..-|+++
T Consensus 4 i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~ 47 (278)
T KOG4842|consen 4 IKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLA 47 (278)
T ss_pred EEEEEEecCcEEEEEeccccccCCCCcccceeeeeccchHHHHh
Confidence 44445588999999999999999999999999999999999986
No 296
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=49.71 E-value=48 Score=27.22 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=40.5
Q ss_pred eEEEEEEeCC---eEEEE-EecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccC
Q 042485 15 ELTLTVKWSG---KEYTV-RVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQL 76 (332)
Q Consensus 15 ~i~i~vk~~g---~~~~i-~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~ 76 (332)
.|-|.|.-.. .+-.. =|+.+.||++|...|....+++++. -.++. ++.++..+.+++++
T Consensus 27 rIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfV--nn~lp~~s~~mg~l 89 (121)
T PTZ00380 27 HVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAI--EGSTPAVTATVGDI 89 (121)
T ss_pred ccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEE--CCccCCccchHHHH
Confidence 4566666322 22334 5899999999999999999999997 44443 45555555666654
No 297
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.15 E-value=79 Score=29.65 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=54.9
Q ss_pred ceEEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCccc-C--cccccccCCCCCCceEEE
Q 042485 14 EELTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLA-D--DTVLLSQLPLKSSLKMTM 86 (332)
Q Consensus 14 ~~i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l-~--d~~~L~~~~i~~g~~l~l 86 (332)
..-+|.|++ .|++...++++..|+.+++..|...+|+.++-=.|+- -+.-+.. + ...+|..+++.+-+.|+|
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t-~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHT-GFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeec-CCCceecccccccccHHHhccccchheec
Confidence 568899997 7999999999999999999999999998886655542 1111122 2 246899999998887765
No 298
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=47.90 E-value=10 Score=32.86 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=13.5
Q ss_pred ceEEEecCCceEeccC
Q 042485 148 KLLVLDIDYTLFDHRS 163 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~ 163 (332)
++++||.||||.....
T Consensus 2 ~~i~fDktGTLt~~~~ 17 (215)
T PF00702_consen 2 DAICFDKTGTLTQGKM 17 (215)
T ss_dssp SEEEEECCTTTBESHH
T ss_pred eEEEEecCCCcccCeE
Confidence 5799999999987743
No 299
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=47.78 E-value=32 Score=29.64 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=29.8
Q ss_pred CceEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 042485 13 SEELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVL 51 (332)
Q Consensus 13 ~~~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp 51 (332)
.+.+.|+++.+|+.++++++++.++.++-... .+||+.
T Consensus 4 ~~~~~i~~~vNG~~~~~~~~~~~~Ll~~LR~~-gltgtK 41 (159)
T PRK09908 4 SETITIECTINGMPFQLHAAPGTPLSELLREQ-GLLSVK 41 (159)
T ss_pred CCceeEEEEECCEEEEEecCCCCcHHHHHHHc-CCCCCC
Confidence 34566889999999999999999999876653 566643
No 300
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=46.49 E-value=29 Score=26.37 Aligned_cols=16 Identities=38% Similarity=0.279 Sum_probs=14.1
Q ss_pred cceEEEecCCceEecc
Q 042485 147 KKLLVLDIDYTLFDHR 162 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~ 162 (332)
...|||+=|||.|++.
T Consensus 39 ~~~lvLeeDGT~Vd~E 54 (81)
T cd06537 39 VLTLVLEEDGTAVDSE 54 (81)
T ss_pred ceEEEEecCCCEEccH
Confidence 4789999999999884
No 301
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=46.45 E-value=75 Score=23.12 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=49.0
Q ss_pred eCCeEEEEEecCCCCHHHHHHHHHHHhC---CCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 22 WSGKEYTVRVCGDDSVAELKRRICELTN---VLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 22 ~~g~~~~i~v~~~~tV~~LK~~I~~~tg---vp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
.+|+...++.+....+-...++--+.+| -|++.=-|-- . .|..++-+..+.++|+..|.++.|...
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkD-e-~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKD-E-SGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeec-c-CCcEeeccchhhhccccccceEEEEee
Confidence 4678888888888888777766555554 4666555432 2 677888788999999999999998643
No 302
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=46.26 E-value=54 Score=28.28 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=31.7
Q ss_pred eEEEEEE-eCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 042485 15 ELTLTVK-WSGKEYTVRVCGDDSVAELKRRICELTNVL 51 (332)
Q Consensus 15 ~i~i~vk-~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp 51 (332)
.+.+.|. ..|....+.+++++|+.++-+.|....|++
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~ 40 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR 40 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4567777 467777899999999999999999999994
No 303
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=45.77 E-value=28 Score=27.77 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=38.5
Q ss_pred ceEEEEEE-eCCeE------EEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccC
Q 042485 14 EELTLTVK-WSGKE------YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQL 76 (332)
Q Consensus 14 ~~i~i~vk-~~g~~------~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~ 76 (332)
..|-|.|. +.+.. ...=|+.+.||++|...|....+++++ |-|.... ++.++..+.+++++
T Consensus 15 ~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~-~alfl~V-n~~lp~~s~tm~el 82 (104)
T PF02991_consen 15 DKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPE-QALFLFV-NNTLPSTSSTMGEL 82 (104)
T ss_dssp TEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TT-S-EEEEB-TTBESSTTSBHHHH
T ss_pred CccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCC-ceEEEEE-cCcccchhhHHHHH
Confidence 34566666 43322 123478999999999999999999887 5553232 56666666777664
No 304
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.54 E-value=31 Score=26.04 Aligned_cols=16 Identities=38% Similarity=0.339 Sum_probs=14.1
Q ss_pred cceEEEecCCceEecc
Q 042485 147 KKLLVLDIDYTLFDHR 162 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~ 162 (332)
-..|||+=|||.|++.
T Consensus 40 ~~~lvL~eDGT~Vd~E 55 (78)
T cd06539 40 LVTLVLEEDGTVVDTE 55 (78)
T ss_pred CcEEEEeCCCCEEccH
Confidence 5789999999999884
No 305
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=45.40 E-value=60 Score=25.50 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=32.5
Q ss_pred EEe-CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 20 VKW-SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 20 vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
+.| +|++.-+.|+.+.|..+|++++.+.++++.. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 465 5677788999999999999999999999877 55544
No 306
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.22 E-value=71 Score=24.14 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 35 DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 35 ~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
.+..+|+.+..+..+++...-.|.--. .|-..+|+.-+..+ .++..+|++-..
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~e-DGT~Vd~EeyF~~L--pdnT~lm~L~~g 73 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEE-DGTVVDTEEFFQTL--GDNTHFMVLEKG 73 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeC-CCCEEccHHHHhhC--CCCCEEEEECCC
Confidence 589999999999999987655554222 78888787777766 577777776443
No 307
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=43.88 E-value=49 Score=30.53 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=29.7
Q ss_pred CCCceEEEEEE-eC--C-----eEEEEEecCCCCHHHHHHHHHHH
Q 042485 11 SSSEELTLTVK-WS--G-----KEYTVRVCGDDSVAELKRRICEL 47 (332)
Q Consensus 11 ~~~~~i~i~vk-~~--g-----~~~~i~v~~~~tV~~LK~~I~~~ 47 (332)
+++|+|+|.|+ +. + ++|.|+++++.||.+.-..|.+.
T Consensus 1 ~~~~~~~~~i~R~~~~~~~~~~q~y~v~~~~~~tvLdaL~~I~~~ 45 (249)
T PRK08640 1 MSEKTVRLIIKRQDGPDSKPYWEEFEIPYRPNMNVISALMEIRRN 45 (249)
T ss_pred CCCcEEEEEEEeeCCCCCCceeEEEEecCCCCCcHHHHHHHHHhc
Confidence 35678888888 54 2 56889999999999999999764
No 308
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=43.71 E-value=60 Score=24.40 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=32.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 25 KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 25 ~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
.+|.+.|+.++|=.++|+.|+...||.+..-.-+.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~ 49 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLI 49 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEE
Confidence 57999999999999999999999999998877765
No 309
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=42.59 E-value=10 Score=36.64 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=40.9
Q ss_pred EeCCeEEEEEec-CCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccc
Q 042485 21 KWSGKEYTVRVC-GDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVL 72 (332)
Q Consensus 21 k~~g~~~~i~v~-~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~ 72 (332)
...|....+.+. .+..+..||.++...++|++..||+.+ .|..+.|+..
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~---~~~~l~d~~~ 338 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRG---EGAFLKDNRS 338 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeecc---CCcccCcccc
Confidence 356777777776 788899999999999999999999998 7888877643
No 310
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=42.53 E-value=32 Score=30.96 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=30.3
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEc
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWS 193 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~T 193 (332)
+-++.+|.||||--.+ ...-|-+.+||+.+.+...|.+.-
T Consensus 11 ~~l~lfdvdgtLt~~r-------~~~~~e~~~~l~~lr~~v~ig~Vg 50 (252)
T KOG3189|consen 11 ETLCLFDVDGTLTPPR-------QKVTPEMLEFLQKLRKKVTIGFVG 50 (252)
T ss_pred ceEEEEecCCcccccc-------ccCCHHHHHHHHHHhhheEEEEee
Confidence 3466779999998543 456788999999998887775443
No 311
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=42.50 E-value=46 Score=24.29 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=26.5
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 042485 23 SGKEYTVRVCGDDSVAELKRRICELTNVL 51 (332)
Q Consensus 23 ~g~~~~i~v~~~~tV~~LK~~I~~~tgvp 51 (332)
.|...++++++++|+.+|=++|....|+.
T Consensus 5 D~~~~~~~v~~~~t~~~l~~~v~~~l~l~ 33 (80)
T PF09379_consen 5 DGTTKTFEVDPKTTGQDLLEQVCDKLGLK 33 (80)
T ss_dssp SEEEEEEEEETTSBHHHHHHHHHHHHTTS
T ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHcCCC
Confidence 56678899999999999999999999986
No 312
>CHL00030 rpl23 ribosomal protein L23
Probab=42.35 E-value=57 Score=25.47 Aligned_cols=38 Identities=18% Similarity=0.068 Sum_probs=33.7
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeecc
Q 042485 24 GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPK 61 (332)
Q Consensus 24 g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k 61 (332)
...|++.|+.++|=.++|++|+...||.+..-.-+..+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 35799999999999999999999999999988877543
No 313
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=41.82 E-value=22 Score=26.83 Aligned_cols=17 Identities=35% Similarity=0.282 Sum_probs=14.3
Q ss_pred CcceEEEecCCceEecc
Q 042485 146 GKKLLVLDIDYTLFDHR 162 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~ 162 (332)
.-..|||+-|||.|+..
T Consensus 39 ~~~~lvL~eDGTeVddE 55 (78)
T cd01615 39 APVTLVLEEDGTEVDDE 55 (78)
T ss_pred CCeEEEEeCCCcEEccH
Confidence 45679999999999774
No 314
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.54 E-value=9.8 Score=37.99 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=56.3
Q ss_pred eEEEEEEeCCeE--E-EEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 15 ELTLTVKWSGKE--Y-TVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 15 ~i~i~vk~~g~~--~-~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+++|+....++. . .++.+.+-|-.+|...|++..||+-..-|.+- +||++.-..||.+-|++-+..+|++.
T Consensus 37 t~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~---~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 37 TESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCII---NGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred ceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheee---ccceeecccchhhhhhhhhhHHHHHh
Confidence 445555544333 2 24667788899999999999999999999886 89999888999999999888877653
No 315
>PRK10671 copA copper exporting ATPase; Provisional
Probab=41.32 E-value=64 Score=35.10 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=68.3
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceEEEEecCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKITALLDHL 224 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~~~~~d~~ 224 (332)
+...+.+-.|++++-.- ...-..||+..+.|+.+++ .+++++.|......++.+++++|+. .++..
T Consensus 629 g~~~v~va~~~~~~g~~----~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~--------~~~~~- 695 (834)
T PRK10671 629 GATPVLLAVDGKAAALL----AIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID--------EVIAG- 695 (834)
T ss_pred CCeEEEEEECCEEEEEE----EccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC--------EEEeC-
Confidence 44555555666655221 1234589999999999987 7999999999999999999999884 12211
Q ss_pred ceEEEeeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeeee
Q 042485 225 AMITVQSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLAI 278 (332)
Q Consensus 225 ~~~~~~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~I 278 (332)
. .+... .+-+..+ + -..+++++|-|...-..+-...|+-|
T Consensus 696 -~----~p~~K---~~~i~~l-----~-~~~~~v~~vGDg~nD~~al~~Agvgi 735 (834)
T PRK10671 696 -V----LPDGK---AEAIKRL-----Q-SQGRQVAMVGDGINDAPALAQADVGI 735 (834)
T ss_pred -C----CHHHH---HHHHHHH-----h-hcCCEEEEEeCCHHHHHHHHhCCeeE
Confidence 0 01111 1112222 2 15678999999977666655566644
No 316
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=41.30 E-value=59 Score=29.48 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=27.6
Q ss_pred eEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 042485 15 ELTLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVL 51 (332)
Q Consensus 15 ~i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp 51 (332)
+..|++..+|+.+.++++++.|+.++-..-..+||+.
T Consensus 49 ~~~i~~~VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK 85 (217)
T PRK11433 49 ISPVTLKVNGKTEQLEVDTRTTLLDALREHLHLTGTK 85 (217)
T ss_pred CceEEEEECCEEEEEecCCCCcHHHHHHHhcCCCCCC
Confidence 4668888999999999999999987655422445543
No 317
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=41.16 E-value=44 Score=25.82 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=32.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 042485 25 KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60 (332)
Q Consensus 25 ~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~ 60 (332)
..|++.|+.++|=.++|+.|+...||++..-.-+..
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 568999999999999999999999999988887754
No 318
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=41.11 E-value=67 Score=24.58 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=32.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 25 KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 25 ~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
.+|.+.|+..+|=.++|+.|+...||.+..-.-+.
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~ 56 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLI 56 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEE
Confidence 57999999999999999999999999999888775
No 319
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=40.81 E-value=95 Score=30.49 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=45.2
Q ss_pred EEEEEEe-CCeEEEEEecCCCCHHHHHHHHHHHhC-CCCCCceEeeccCCCccc-CcccccccCCCCCC
Q 042485 16 LTLTVKW-SGKEYTVRVCGDDSVAELKRRICELTN-VLPKRQKLLYPKIGNKLA-DDTVLLSQLPLKSS 81 (332)
Q Consensus 16 i~i~vk~-~g~~~~i~v~~~~tV~~LK~~I~~~tg-vp~~~QkLl~~k~~gk~l-~d~~~L~~~~i~~g 81 (332)
=+|.|+. .|+.....++.+-||.|++..|...-. -+...|-|+. -+.-|++ +++.||.+.||.+.
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~-~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMM-AFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeee-cCCCcccCCcchhHHhccchhh
Confidence 3466664 466677788889999999999987644 4444566653 1134555 56789999999764
No 320
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=40.57 E-value=79 Score=30.46 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=42.9
Q ss_pred EEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 19 TVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 19 ~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+|+.+|+.++ ++...||.+|-+. .+++++.-.+-. +|..... ..+.+.-|++|++|-++-
T Consensus 2 ~I~VNGk~~e--l~e~~TL~dLL~~----L~i~~~~VAVeV---NgeIVpr-~~w~~t~LkeGD~IEII~ 61 (326)
T PRK11840 2 RIRLNGEPRQ--VPAGLTIAALLAE----LGLAPKKVAVER---NLEIVPR-SEYGQVALEEGDELEIVH 61 (326)
T ss_pred EEEECCEEEe--cCCCCcHHHHHHH----cCCCCCeEEEEE---CCEECCH-HHcCccccCCCCEEEEEE
Confidence 4667788654 4567888887665 588877766654 7877642 467778899999988763
No 321
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=40.48 E-value=40 Score=25.55 Aligned_cols=16 Identities=44% Similarity=0.272 Sum_probs=13.9
Q ss_pred cceEEEecCCceEecc
Q 042485 147 KKLLVLDIDYTLFDHR 162 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~ 162 (332)
..+|||+-|||.|++.
T Consensus 39 ~~~lvL~eDGT~Vd~E 54 (79)
T cd06538 39 ISSLVLDEDGTGVDTE 54 (79)
T ss_pred ccEEEEecCCcEEccH
Confidence 3789999999999874
No 322
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=40.29 E-value=68 Score=23.74 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=33.0
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 23 SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 23 ~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
.|+...|.+-++.|+.|+-+++.+.-|+.|+.=-|..
T Consensus 8 ng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~ 44 (72)
T cd01760 8 NGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFL 44 (72)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 5677789999999999999999999999999888764
No 323
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=40.00 E-value=1.7e+02 Score=22.41 Aligned_cols=64 Identities=14% Similarity=0.279 Sum_probs=32.6
Q ss_pred EEEEEEe--CCeE--EEEEecCCCCHHHHHH---HHHHHhCCCCCCceE-eeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 16 LTLTVKW--SGKE--YTVRVCGDDSVAELKR---RICELTNVLPKRQKL-LYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 16 i~i~vk~--~g~~--~~i~v~~~~tV~~LK~---~I~~~tgvp~~~QkL-l~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
|+|.|-| ..+. ..++|+..+||.+=-+ .++..-++..+.+++ +| |+...-+. -|++|+.|-+-
T Consensus 1 i~VeV~yA~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIf----Gk~~~~d~-----~L~~GDRVEIY 71 (84)
T PF03658_consen 1 IRVEVAYALPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIF----GKLVKLDT-----VLRDGDRVEIY 71 (84)
T ss_dssp EEEEEEEEETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEE----E-S--TT------B--TT-EEEEE
T ss_pred CEEEEEEECCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeee----eeEcCCCC-----cCCCCCEEEEe
Confidence 3455553 3333 4678999999997544 334445678888887 44 55554323 35888888755
Q ss_pred e
Q 042485 88 G 88 (332)
Q Consensus 88 g 88 (332)
-
T Consensus 72 R 72 (84)
T PF03658_consen 72 R 72 (84)
T ss_dssp -
T ss_pred c
Confidence 3
No 324
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=39.91 E-value=9.1 Score=34.65 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=25.7
Q ss_pred ceEEEecCCceEeccCCCCCCceecCCcHHHHHHH
Q 042485 148 KLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTA 182 (332)
Q Consensus 148 k~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~ 182 (332)
++++||+.||...-+......+-+.|-.|.+||+.
T Consensus 2 ~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~ 36 (220)
T TIGR01691 2 KNVLLDIEGTTGSISFVHDVLFPYAASRLESFVND 36 (220)
T ss_pred CEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHH
Confidence 57999999999977665544455666677777763
No 325
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=39.33 E-value=1.1e+02 Score=22.97 Aligned_cols=51 Identities=16% Similarity=0.331 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEe
Q 042485 35 DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 35 ~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~g 88 (332)
.|..+|+.+..+..+++...-.|.--. .|-..+|+.-+..+ .++..+|++-
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~e-DGT~VddEeyF~tL--p~nt~l~~L~ 69 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEE-DGTIVDDEEYFQTL--PDNTELMALE 69 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEec-CCcEEccHHHHhcC--CCCcEEEEEc
Confidence 589999999999999997655553122 78888887777766 5666676653
No 326
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=38.81 E-value=51 Score=25.56 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=33.1
Q ss_pred CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 042485 24 GKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60 (332)
Q Consensus 24 g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~ 60 (332)
..+|.+.|+..+|=.++|+.|+...||++..-.-+..
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 4579999999999999999999999999998887653
No 327
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=38.80 E-value=48 Score=28.55 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=31.1
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCc
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATS 196 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~ 196 (332)
+.|.+|||=|+|+.--... ..+-..+|+..+| +..+-.-+++|+|++.
T Consensus 42 ~ikavVlDKDNcit~P~~~--~Iwp~~l~~ie~~-~~vygek~i~v~SNsa 89 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSL--AIWPPLLPSIERC-KAVYGEKDIAVFSNSA 89 (190)
T ss_pred CceEEEEcCCCeeeCCccc--ccCchhHHHHHHH-HHHhCcccEEEEecCc
Confidence 7899999999999854322 2344456666554 3344446788887653
No 328
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=38.78 E-value=1.2e+02 Score=23.40 Aligned_cols=59 Identities=24% Similarity=0.277 Sum_probs=34.1
Q ss_pred eEEEEEec--CCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcc------c-Cc--cccc--ccCCCCCCceEEEE
Q 042485 25 KEYTVRVC--GDDSVAELKRRICELTNVLPKRQKLLYPKIGNKL------A-DD--TVLL--SQLPLKSSLKMTMI 87 (332)
Q Consensus 25 ~~~~i~v~--~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~------l-~d--~~~L--~~~~i~~g~~l~l~ 87 (332)
+++.++++ ..+||.+|-+.|.+.. ++.+..|+. . +|.+ + ++ -..+ .+..+++|+.|.++
T Consensus 17 ~~~~~~~~~~~~~tV~dll~~L~~~~--~~~~~~lf~-~-~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 17 KEHHVVLDGEKPVTVGDLLDYVASNL--LEERPDLFI-E-GGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred eEEEEeccCCCCCcHHHHHHHHHHhC--chhhhhhEe-c-CCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 34545444 5789999999998776 455555542 1 2211 1 11 1223 23567888888776
No 329
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=37.33 E-value=43 Score=25.24 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=18.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHhC
Q 042485 27 YTVRVCGDDSVAELKRRICELTN 49 (332)
Q Consensus 27 ~~i~v~~~~tV~~LK~~I~~~tg 49 (332)
++++++.++|+.++|+.|.++-.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 46889999999999999988744
No 330
>PRK08453 fliD flagellar capping protein; Validated
Probab=36.85 E-value=62 Score=34.36 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=28.4
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHHh
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRICELT 48 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~t 48 (332)
..|.+.++|+.|+|+|+...|+.+|+.+|-..+
T Consensus 129 ~~~~~~~~G~~~sIdi~~gtTL~~L~~~INd~~ 161 (673)
T PRK08453 129 TTLKFYTQGKDYAIDIKAGMTLGDVAQSITDAT 161 (673)
T ss_pred ceEEEEECCEEEEEEeCCCCcHHHHHHHhcCCC
Confidence 447777889999999999999999999998433
No 331
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=36.23 E-value=1.4e+02 Score=24.12 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=40.6
Q ss_pred ceEEEEEE-eC-Ce-----EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccC
Q 042485 14 EELTLTVK-WS-GK-----EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQL 76 (332)
Q Consensus 14 ~~i~i~vk-~~-g~-----~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~ 76 (332)
..|-|.|. .. ++ +-..-|+.+.||++|...|....++.++.--.++. ++.+...+.+++++
T Consensus 23 ~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~V--n~~~p~~~~~~~~l 90 (112)
T cd01611 23 DRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFV--NNSLPPTSATMSQL 90 (112)
T ss_pred CceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEE--CCccCCchhHHHHH
Confidence 35666666 32 22 12235899999999999999999988885544544 44455555666654
No 332
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=36.17 E-value=38 Score=30.40 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=20.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 042485 25 KEYTVRVCGDDSVAELKRRICELTNVLPK 53 (332)
Q Consensus 25 ~~~~i~v~~~~tV~~LK~~I~~~tgvp~~ 53 (332)
-.|.+.|.++.|++++|++|++.+||+..
T Consensus 133 iPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 133 IPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 34557889999999999999999998764
No 333
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=35.80 E-value=52 Score=25.02 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=14.4
Q ss_pred CcceEEEecCCceEecc
Q 042485 146 GKKLLVLDIDYTLFDHR 162 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~ 162 (332)
....|||+=|||.|+..
T Consensus 41 ~~~~lvL~eDGT~VddE 57 (80)
T cd06536 41 APITLVLAEDGTIVEDE 57 (80)
T ss_pred CceEEEEecCCcEEccH
Confidence 35689999999999874
No 334
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=35.14 E-value=41 Score=27.39 Aligned_cols=29 Identities=7% Similarity=0.291 Sum_probs=24.7
Q ss_pred EEEEEEeCCeEEEEEecCCCCHHHHHHHH
Q 042485 16 LTLTVKWSGKEYTVRVCGDDSVAELKRRI 44 (332)
Q Consensus 16 i~i~vk~~g~~~~i~v~~~~tV~~LK~~I 44 (332)
|+|.+..+++++.+++..+.|..+|.++|
T Consensus 1 mkI~i~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEECCEEEEEEECCCHHHHHHHHhC
Confidence 57888888999999999999999888876
No 335
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=34.41 E-value=1.2e+02 Score=27.73 Aligned_cols=54 Identities=20% Similarity=0.083 Sum_probs=41.8
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHH-hCCcEEEEcCCcHHHHHHHHHHh
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAY-AEYDIMIWSATSMKWVELKMEEL 207 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~-~~yeivI~Tas~~~ya~~~l~~l 207 (332)
.-+.+.|||-|||-.+ ...-||..|-|+.|+ ++..|-..|+++++-=..+.++|
T Consensus 6 ~v~gvLlDlSGtLh~e--------~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL 60 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIE--------DAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERL 60 (262)
T ss_pred ccceEEEeccceEecc--------cccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHH
Confidence 4567889999999755 347899999999999 68899899988876544444443
No 336
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=34.37 E-value=30 Score=35.27 Aligned_cols=24 Identities=17% Similarity=-0.020 Sum_probs=21.0
Q ss_pred CcEEEEcCCcHHHHHHHHHH-hCCC
Q 042485 187 YDIMIWSATSMKWVELKMEE-LGVL 210 (332)
Q Consensus 187 yeivI~Tas~~~ya~~~l~~-l~~~ 210 (332)
-+++|-|++..-|+++-+++ +|..
T Consensus 109 g~~vVVTAsPrvmVEpFake~LG~D 133 (498)
T PLN02499 109 DKRVVVTRMPRVMVERFAKEHLRAD 133 (498)
T ss_pred CeEEEEeCCHHHHHHHHHHHhcCCc
Confidence 39999999999999999998 6653
No 337
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=33.99 E-value=57 Score=35.17 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=44.7
Q ss_pred CCeEEEEEec-CCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCC--CCCceEEEE
Q 042485 23 SGKEYTVRVC-GDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPL--KSSLKMTMI 87 (332)
Q Consensus 23 ~g~~~~i~v~-~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i--~~g~~l~l~ 87 (332)
.|+..++++. ...|+.+||..|+...|+....|.++ -. ||-.+.-+..|.++.- ++-..|.+.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl-~e-gGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFL-DE-GGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeee-ec-CCcCcccccchhhhccccCCCCceEEe
Confidence 4666677664 56899999999999999999999988 34 7776665555555431 344455554
No 338
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=33.74 E-value=53 Score=34.92 Aligned_cols=58 Identities=21% Similarity=0.095 Sum_probs=43.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccC--CCccc--CcccccccCCCCCCceEEEE
Q 042485 27 YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKI--GNKLA--DDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 27 ~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~--~gk~l--~d~~~L~~~~i~~g~~l~l~ 87 (332)
|.+.|+...+++.||+.|+++.+|+.+.-||. .+. +|..+ .++.+|+.+ -+|.+|++-
T Consensus 879 ~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~-R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~ 940 (1203)
T KOG4598|consen 879 HKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIV-RHASDNGSEASFMDNETLSGA--FQSCFITIK 940 (1203)
T ss_pred eeeeccceeeHHHHHHHHHHHhCcChhHeEEE-EEecCCcchhhhccchhhhhh--cccceEEEE
Confidence 77899999999999999999999999999997 332 22222 245566655 456666653
No 339
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=33.44 E-value=1e+02 Score=30.62 Aligned_cols=70 Identities=11% Similarity=0.102 Sum_probs=48.1
Q ss_pred EEEEeCCeEEEEEecCCCCHHHHHHHHHHHh--CCCCCCceEeeccCC--Ccc--cCcccccccCCCCCCceEEEEe
Q 042485 18 LTVKWSGKEYTVRVCGDDSVAELKRRICELT--NVLPKRQKLLYPKIG--NKL--ADDTVLLSQLPLKSSLKMTMIG 88 (332)
Q Consensus 18 i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~t--gvp~~~QkLl~~k~~--gk~--l~d~~~L~~~~i~~g~~l~l~g 88 (332)
+.++-......+++.++++.+.|-++|-.-. |..|++-.+- -+.+ |-. +..+.++.++||+.|+.+.|--
T Consensus 3 ~rfRsk~G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc-~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 3 FRFRSKEGQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVC-SAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred EEEecCCCceeeeccccchhhhhhHHHHhhhccCCCccceEEE-eCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 4455445568899999999999999887654 4455554443 2212 221 2345899999999999888765
No 340
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=31.22 E-value=1.1e+02 Score=32.75 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=38.0
Q ss_pred eecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC
Q 042485 170 QLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL 210 (332)
Q Consensus 170 ~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~ 210 (332)
...||+..+.++.|++ ++++++.|......+..+.+++|+.
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID 608 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 4589999999999998 7999999999999999999999983
No 341
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=31.02 E-value=1.9e+02 Score=21.36 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=29.0
Q ss_pred EEec-CCCCHHHHHHHHHHHhCC---CCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 29 VRVC-GDDSVAELKRRICELTNV---LPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 29 i~v~-~~~tV~~LK~~I~~~tgv---p~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
++++ ..+||.+|++.|.+...- ......++... ++....+ +.-|++|+.|-++
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aV-N~~~~~~-----~~~l~dgDeVai~ 75 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAV-NQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEE-CCEEcCC-----CCCCCCCCEEEEe
Confidence 3443 358999999999887521 01112222111 4433322 2347888888766
No 342
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=30.68 E-value=1.6e+02 Score=27.08 Aligned_cols=73 Identities=26% Similarity=0.306 Sum_probs=48.4
Q ss_pred CceEEEEEEe---CCeEEE----EEecCCCCHHHHHHHHHHHhCCCCCCceEee--ccCCCc--ccCcccccccCCCCCC
Q 042485 13 SEELTLTVKW---SGKEYT----VRVCGDDSVAELKRRICELTNVLPKRQKLLY--PKIGNK--LADDTVLLSQLPLKSS 81 (332)
Q Consensus 13 ~~~i~i~vk~---~g~~~~----i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~--~k~~gk--~l~d~~~L~~~~i~~g 81 (332)
...+-|.+|+ ..++.. +-|+.+++|++|-..|.+..|.|++..-++| .+ .++ .++...++....|.+|
T Consensus 66 ~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~-~~~ie~i~~~~t~~~~el~~G 144 (249)
T PF12436_consen 66 SDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIK-PNMIEPIDPNQTFEKAELQDG 144 (249)
T ss_dssp TTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEE-TTEEEE--SSSBHHHTT--TT
T ss_pred CCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEec-cceeeEcCCCCchhhcccCCC
Confidence 4468899994 234432 5689999999999999999999999888887 33 333 3466789999999999
Q ss_pred ceEEE
Q 042485 82 LKMTM 86 (332)
Q Consensus 82 ~~l~l 86 (332)
+-|..
T Consensus 145 dIi~f 149 (249)
T PF12436_consen 145 DIICF 149 (249)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 86653
No 343
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=30.37 E-value=1.6e+02 Score=22.36 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCC
Q 042485 35 DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVE 91 (332)
Q Consensus 35 ~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~ 91 (332)
.+..+|+.+..+..+++. .-.|. +--.|-..+|+.-+..+ .++..+|+++..+
T Consensus 21 ~sL~eL~~K~~~~l~l~~-~~~lv-L~eDGT~Vd~EeyF~tL--p~nt~l~vL~~gq 73 (79)
T cd06538 21 DSLEDLLNKVLDALLLDC-ISSLV-LDEDGTGVDTEEFFQAL--ADNTVFMVLGKGQ 73 (79)
T ss_pred CCHHHHHHHHHHHcCCCC-ccEEE-EecCCcEEccHHHHhhC--CCCcEEEEECCCC
Confidence 589999999999999953 34443 22278778777777766 5677777775544
No 344
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=29.48 E-value=1.4e+02 Score=22.85 Aligned_cols=70 Identities=11% Similarity=0.128 Sum_probs=42.1
Q ss_pred EEEEEEeCCeE-----EEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCc-ccCcccccccC--CCCCCceEEEE
Q 042485 16 LTLTVKWSGKE-----YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNK-LADDTVLLSQL--PLKSSLKMTMI 87 (332)
Q Consensus 16 i~i~vk~~g~~-----~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk-~l~d~~~L~~~--~i~~g~~l~l~ 87 (332)
++|..+-.|.. -..-|+++.|+++|...|....++.++.--.+|.. .. +...+.+++++ .-.++..|.|.
T Consensus 2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvn--n~f~p~~d~~~g~LY~~~~~dGfLyi~ 79 (87)
T cd01612 2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYIN--NSFAPSPDENVGNLYRCFGTNGELIVS 79 (87)
T ss_pred eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEEC--CccCCCchhHHHHHHHhcCCCCEEEEE
Confidence 45555544432 23458999999999999999999987754445543 33 33333455442 11344555544
No 345
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=29.35 E-value=1.4e+02 Score=22.47 Aligned_cols=37 Identities=5% Similarity=0.126 Sum_probs=31.9
Q ss_pred EEEEEeCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 042485 17 TLTVKWSGKEYTVRVCGDDSVAELKRRICELTNVLPK 53 (332)
Q Consensus 17 ~i~vk~~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~ 53 (332)
.|.+.+.|++..|.++---...||.+++....|-+.+
T Consensus 2 RiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afGq~md 38 (79)
T cd06405 2 RIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFGQPMD 38 (79)
T ss_pred eEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee
Confidence 4666799999999999999999999999999994433
No 346
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.18 E-value=45 Score=31.10 Aligned_cols=48 Identities=31% Similarity=0.309 Sum_probs=40.0
Q ss_pred ceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCCCCCCceE
Q 042485 169 LQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVLTNPNYKI 217 (332)
Q Consensus 169 ~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~~~~~~~~ 217 (332)
.+.+|-|.++|.+.|.. ..-+.||||+.-.-++.++++-+.. .|+.++
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~-~pn~k~ 184 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVL-HPNVKF 184 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhcc-CccHHh
Confidence 46799999999999998 5899999999999999988776554 455544
No 347
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=29.17 E-value=50 Score=29.64 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=30.1
Q ss_pred EEEEEEeC--C----eEEEEEecCCCCHHHHHHHHHHHhCCCCC-CceEeeccC-CCcc---cCcccccccC
Q 042485 16 LTLTVKWS--G----KEYTVRVCGDDSVAELKRRICELTNVLPK-RQKLLYPKI-GNKL---ADDTVLLSQL 76 (332)
Q Consensus 16 i~i~vk~~--g----~~~~i~v~~~~tV~~LK~~I~~~tgvp~~-~QkLl~~k~-~gk~---l~d~~~L~~~ 76 (332)
.++.|.|- + +.+.+-|+.+.||+||.+.+....+++.+ .++|..+-+ +++. +..+.+|.++
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 34556653 2 23667789999999999999999999776 455542211 3332 3445556555
No 348
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=28.85 E-value=1.3e+02 Score=22.93 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHhCCCCCC--ceEeeccCCCcccCcccccccCCCCCCceEEEEec
Q 042485 35 DSVAELKRRICELTNVLPKR--QKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGT 89 (332)
Q Consensus 35 ~tV~~LK~~I~~~tgvp~~~--QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs 89 (332)
.+..+|+.+..+..+++... -.|. +--.|-..+|+.-+..+ .++..+|++..
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lv-L~eDGT~VddEeyF~tL--p~nT~l~~L~~ 74 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLV-LAEDGTIVEDEDYFLCL--PPNTKFVLLAE 74 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEE-EecCCcEEccHHHHhhC--CCCcEEEEECC
Confidence 58999999999999999543 3332 21178888887777776 56777776643
No 349
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=28.72 E-value=2e+02 Score=22.42 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=27.9
Q ss_pred CceEEEEEEeC--CeEEEEEecCCCCHHHHHHHHHHH
Q 042485 13 SEELTLTVKWS--GKEYTVRVCGDDSVAELKRRICEL 47 (332)
Q Consensus 13 ~~~i~i~vk~~--g~~~~i~v~~~~tV~~LK~~I~~~ 47 (332)
...+.|.|.+. +..+++.++.++|+.+|-+++...
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k 50 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKK 50 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 44688888876 567889999999999998888776
No 350
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=27.90 E-value=72 Score=24.11 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHhC
Q 042485 27 YTVRVCGDDSVAELKRRICELTN 49 (332)
Q Consensus 27 ~~i~v~~~~tV~~LK~~I~~~tg 49 (332)
.++.++.++|+.++|+.+.++-.
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHH
Confidence 46789999999999999987643
No 351
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=27.75 E-value=42 Score=29.84 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=67.0
Q ss_pred ecCCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHhCCC--CCCCceEEEEecCCceEEE
Q 042485 153 DIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEELGVL--TNPNYKITALLDHLAMITV 229 (332)
Q Consensus 153 DLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l~~~--~~~~~~~~~~~d~~~~~~~ 229 (332)
-|.|-++.+........-.+-|..-+++++-++ +..+.|||+++-.- +..+ +|.. .|-+.-++.+||-. .
T Consensus 85 ~lQG~iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~A-QkL~--Fghs~agdL~~lfsGyfDtt----i 157 (229)
T COG4229 85 ALQGMIWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKA-QKLF--FGHSDAGDLNSLFSGYFDTT----I 157 (229)
T ss_pred HHHhHHHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCchh-HHHh--hcccccccHHhhhcceeecc----c
Confidence 355666655443333334577899999998887 79999999999543 3322 1111 12233344455420 0
Q ss_pred eeCCCCCccccccccccccCCCcCCCCcEEEEeCCccccccCCCCeee
Q 042485 230 QSDSRGIFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRNFVMNPQNGLA 277 (332)
Q Consensus 230 ~~~~~g~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~~~~~p~Ngi~ 277 (332)
-.......|.|=+..| | .++..++++-|.+.-.....+-|+.
T Consensus 158 G~KrE~~SY~kIa~~i-----G-l~p~eilFLSDn~~EL~AA~~vGl~ 199 (229)
T COG4229 158 GKKRESQSYAKIAGDI-----G-LPPAEILFLSDNPEELKAAAGVGLA 199 (229)
T ss_pred cccccchhHHHHHHhc-----C-CCchheEEecCCHHHHHHHHhcchh
Confidence 0001112355556666 5 4999999999999888777666654
No 352
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=27.61 E-value=2.8e+02 Score=22.43 Aligned_cols=48 Identities=8% Similarity=0.199 Sum_probs=38.6
Q ss_pred ceEEEEEEeCCe-----EEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeecc
Q 042485 14 EELTLTVKWSGK-----EYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPK 61 (332)
Q Consensus 14 ~~i~i~vk~~g~-----~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k 61 (332)
..++|.++--|. .-...|+++.|++-+-..|....++++..|-.+|..
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN 81 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVN 81 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEc
Confidence 457777774443 234689999999999999999999999999999854
No 353
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=26.79 E-value=66 Score=27.07 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=37.1
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecCCCcccc
Q 042485 32 CGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTVEDEIIV 96 (332)
Q Consensus 32 ~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~~~~~~~ 96 (332)
.+.++-+.|+ ++++.+|||.++-.- +...-.....+.+++ +++.++.|+|...++++.
T Consensus 51 ASgDr~gsl~-~lae~~gi~~~rv~a-----~a~~e~K~~ii~eLk-k~~~k~vmVGnGaND~la 108 (152)
T COG4087 51 ASGDRKGSLV-QLAEFVGIPVERVFA-----GADPEMKAKIIRELK-KRYEKVVMVGNGANDILA 108 (152)
T ss_pred ecCCcchHHH-HHHHHcCCceeeeec-----ccCHHHHHHHHHHhc-CCCcEEEEecCCcchHHH
Confidence 3444444443 356778998886442 221212234677777 699999999999988764
No 354
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=26.37 E-value=58 Score=32.72 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=30.9
Q ss_pred CcceEEEecCCceEeccCCCC----CCceecCCcHHHHHHHHHh-CCcEEEEcCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAE----NPLQLMRPYLHEFLTAAYA-EYDIMIWSAT 195 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~----~~~~~~RP~l~eFL~~l~~-~yeivI~Tas 195 (332)
.+|.+|.|+||||.-+..-.+ -+..+-.-|+...-..+.+ .|.|.-+||-
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR 428 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSR 428 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEecc
Confidence 589999999999997643110 0112344555555555553 5777777663
No 355
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=26.31 E-value=2.3e+02 Score=22.44 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=27.9
Q ss_pred ceEEEEEEeCC--eEEEEEecCCCCHHHHHHHHHHH
Q 042485 14 EELTLTVKWSG--KEYTVRVCGDDSVAELKRRICEL 47 (332)
Q Consensus 14 ~~i~i~vk~~g--~~~~i~v~~~~tV~~LK~~I~~~ 47 (332)
..+.|.|.+.+ ..+++.++.++|+.+|.+.+..+
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k 51 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTK 51 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHH
Confidence 46777887754 66889999999999999988776
No 356
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=25.84 E-value=1e+02 Score=25.15 Aligned_cols=40 Identities=15% Similarity=-0.009 Sum_probs=29.5
Q ss_pred cceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhC
Q 042485 147 KKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAE 186 (332)
Q Consensus 147 kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~ 186 (332)
+-+++||=||+++++...-....-..+||...||+.+.+.
T Consensus 82 Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd02955 82 PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIREL 121 (124)
T ss_pred CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHH
Confidence 3478889999999886432222346779999999998764
No 357
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=25.65 E-value=1.7e+02 Score=22.33 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEEecC
Q 042485 35 DSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 35 ~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~gs~ 90 (332)
.+..+|+.+-.+..+++.. -+|. +--.|-..+|+.-+..+ .++..+|++-..
T Consensus 21 ~sL~EL~~K~~~~L~~~~~-~~lv-LeeDGT~Vd~EeyF~tL--pdnT~lm~L~~g 72 (81)
T cd06537 21 ASLQELLAKALETLLLSGV-LTLV-LEEDGTAVDSEDFFELL--EDDTCLMVLEQG 72 (81)
T ss_pred cCHHHHHHHHHHHhCCCCc-eEEE-EecCCCEEccHHHHhhC--CCCCEEEEECCC
Confidence 5899999999999999633 4443 22278788777777766 577777776443
No 358
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=25.52 E-value=1.4e+02 Score=22.27 Aligned_cols=27 Identities=33% Similarity=0.309 Sum_probs=19.6
Q ss_pred CeEEEEEecC-CCCHHHHHHHHHHHhCC
Q 042485 24 GKEYTVRVCG-DDSVAELKRRICELTNV 50 (332)
Q Consensus 24 g~~~~i~v~~-~~tV~~LK~~I~~~tgv 50 (332)
.....|.+++ .-+|.|||..|.+..+.
T Consensus 9 k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 9 KDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred CCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 3344588864 57999999999877654
No 359
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=25.24 E-value=1.2e+02 Score=31.42 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=46.9
Q ss_pred ceEEEEEEeC---CeEEEEEecCCCCHHHHHHHHHHH--hCCCCCCc------eEeeccC--CCc-ccCccc--------
Q 042485 14 EELTLTVKWS---GKEYTVRVCGDDSVAELKRRICEL--TNVLPKRQ------KLLYPKI--GNK-LADDTV-------- 71 (332)
Q Consensus 14 ~~i~i~vk~~---g~~~~i~v~~~~tV~~LK~~I~~~--tgvp~~~Q------kLl~~k~--~gk-~l~d~~-------- 71 (332)
..+++.|... +..+.|.|=.-+||.++|++|-.. -|+|-.++ -|- |.. +|. +|.|..
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLE-wr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLE-WRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEE-EEETTSEEEEESSSSTTSEEETT
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCcccccee-eecCCCCcccccCCCCCcccCCC
Confidence 4577776643 245788888999999999999765 44544332 232 321 122 344332
Q ss_pred -----ccccCCCCCCceEEEEecC
Q 042485 72 -----LLSQLPLKSSLKMTMIGTV 90 (332)
Q Consensus 72 -----~L~~~~i~~g~~l~l~gs~ 90 (332)
||..|+|++|++|-|+-..
T Consensus 267 wkrLNTL~HY~V~dga~vaLv~k~ 290 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDGATVALVPKQ 290 (539)
T ss_dssp EEE--BHHHHT--TTEEEEEEES-
T ss_pred ceEeccHhhcCCCCCceEEEeecc
Confidence 6888999999999988654
No 360
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=24.99 E-value=73 Score=29.02 Aligned_cols=55 Identities=25% Similarity=0.254 Sum_probs=43.0
Q ss_pred CcceEEEecCCceEeccCCCCCCceecCCcHHHHHHHHHhCCcEEEEcCCcHHHHHHHHHHhCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKMEELGV 209 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~~yeivI~Tas~~~ya~~~l~~l~~ 209 (332)
++..+||| + +..+..+..|--+++|+.++++--.++|||+-.+.-+++++++.-+
T Consensus 151 ~P~i~vlD--E-------P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrviv 205 (245)
T COG4555 151 DPSILVLD--E-------PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIV 205 (245)
T ss_pred CCCeEEEc--C-------CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEE
Confidence 45567776 1 2224557778889999999999999999999999999999886543
No 361
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=24.36 E-value=3e+02 Score=26.72 Aligned_cols=130 Identities=14% Similarity=0.118 Sum_probs=69.7
Q ss_pred CcceEEEecCCceEeccCCCC-----------CCceecCCcHHHHHHHHHhCC--cEEEEcCCcHHHHHHHHHHh-CCCC
Q 042485 146 GKKLLVLDIDYTLFDHRSTAE-----------NPLQLMRPYLHEFLTAAYAEY--DIMIWSATSMKWVELKMEEL-GVLT 211 (332)
Q Consensus 146 ~kk~LVLDLD~TLi~~~~~~~-----------~~~~~~RP~l~eFL~~l~~~y--eivI~Tas~~~ya~~~l~~l-~~~~ 211 (332)
..-.+|=|||.|++++.-... ..--..=||+..|++.+.+.- .+.--|++.+..-. .|.++ +-..
T Consensus 160 a~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~-~L~efi~~~~ 238 (373)
T COG4850 160 AGIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFP-TLQEFITNRN 238 (373)
T ss_pred cceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHH-HHHHHHhcCC
Confidence 567889999999999864321 111246689999999999854 55555665555444 34444 2221
Q ss_pred CCCceEEEEecCCceEE-EeeCCCC-CccccccccccccCCCcCCCCcEEEEeCCccc--------cccCCC--Ceeeec
Q 042485 212 NPNYKITALLDHLAMIT-VQSDSRG-IFDCKPLGLIWDQFPEFYSSKNTIMFDDLRRN--------FVMNPQ--NGLAIK 279 (332)
Q Consensus 212 ~~~~~~~~~~d~~~~~~-~~~~~~g-~~~~KdL~~i~~~~~~~~~~~~~iivDD~~~~--------~~~~p~--Ngi~I~ 279 (332)
-|...+... +....++ +.. .| -+..-.|+.++.. |+-.+.|+|=|+... ..+.|. -||.|+
T Consensus 239 ~P~GPl~L~-~~g~~~~~i~~--sga~rK~~~l~nil~~----~p~~kfvLVGDsGE~DpeIYae~v~~fP~RIl~I~IR 311 (373)
T COG4850 239 FPYGPLLLR-RWGGVLDNIIE--SGAARKGQSLRNILRR----YPDRKFVLVGDSGEHDPEIYAEMVRCFPNRILGIYIR 311 (373)
T ss_pred CCCCchhHh-hcCCccccccc--chhhhcccHHHHHHHh----CCCceEEEecCCCCcCHHHHHHHHHhCccceeeEeee
Confidence 233222110 1111111 100 11 0112346645443 566788888887432 234453 356677
Q ss_pred cccC
Q 042485 280 PFRK 283 (332)
Q Consensus 280 ~f~~ 283 (332)
...+
T Consensus 312 dvs~ 315 (373)
T COG4850 312 DVSG 315 (373)
T ss_pred eccC
Confidence 7665
No 362
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=23.93 E-value=92 Score=31.44 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=36.7
Q ss_pred CCceEeccCCCCCCceecCCcHHHHHHHHHh-CCcEEEEcCCcHHHHHHHHHHh
Q 042485 155 DYTLFDHRSTAENPLQLMRPYLHEFLTAAYA-EYDIMIWSATSMKWVELKMEEL 207 (332)
Q Consensus 155 D~TLi~~~~~~~~~~~~~RP~l~eFL~~l~~-~yeivI~Tas~~~ya~~~l~~l 207 (332)
+|+|-.........++..-|.+..+|+.+++ +-.+-+-|+|...|++.+|+-+
T Consensus 167 ~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 220 (448)
T PF05761_consen 167 DGSLKREVKEDPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYL 220 (448)
T ss_dssp CSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHH
T ss_pred chHHHHHHHHCHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhc
Confidence 3555433222234567778999999999999 4689999999999999999866
No 363
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=23.67 E-value=80 Score=19.46 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHhCCCCC
Q 042485 36 SVAELKRRICELTNVLPK 53 (332)
Q Consensus 36 tV~~LK~~I~~~tgvp~~ 53 (332)
...+||+.++++||-+..
T Consensus 11 d~~~Fr~lVQ~LTG~~~~ 28 (31)
T PF05678_consen 11 DPSNFRALVQRLTGAPSA 28 (31)
T ss_pred CHHHHHHHHHHhHCcCCC
Confidence 457999999999997754
No 364
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=23.16 E-value=1.7e+02 Score=25.24 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=32.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 042485 25 KEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLYP 60 (332)
Q Consensus 25 ~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~ 60 (332)
..|.+.|+.++|=.++|+.|+...||.+..-..+..
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 579999999999999999999999999998887754
No 365
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=22.94 E-value=2.4e+02 Score=21.77 Aligned_cols=58 Identities=5% Similarity=-0.046 Sum_probs=36.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCcccCcccccccCCCCCCceEEEE
Q 042485 27 YTVRVCGDDSVAELKRRICELTNVLPKRQKLLYPKIGNKLADDTVLLSQLPLKSSLKMTMI 87 (332)
Q Consensus 27 ~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~~k~~gk~l~d~~~L~~~~i~~g~~l~l~ 87 (332)
+...++-..+++.||..|+...|+.-+.=.+. + ....++.+.+|-+-+++-...|-+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~-L--QD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFW-L--QDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEE-E--TTEE--TTSBTTTSS----SEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEE-e--ccceecCCccHHHhhccccCEEEEE
Confidence 44567888999999999999999987776665 4 3445888889999998755555443
No 366
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=21.90 E-value=1.8e+02 Score=26.64 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=27.2
Q ss_pred ceEEEEEE-eCC---------eEEEEEecCCCCHHHHHHHHHHH
Q 042485 14 EELTLTVK-WSG---------KEYTVRVCGDDSVAELKRRICEL 47 (332)
Q Consensus 14 ~~i~i~vk-~~g---------~~~~i~v~~~~tV~~LK~~I~~~ 47 (332)
++|+|+|+ +.. ++|.|+++++.||.++-..|.+.
T Consensus 3 ~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvLdaL~~Ik~~ 46 (239)
T PRK13552 3 RTLTFNIFRYNPQDPGSKPHMVTYQLEETPGMTLFIALNRIREE 46 (239)
T ss_pred ceEEEEEEeeCCCCCCCCcceEEEEecCCCCCCHHHHHHHHHhc
Confidence 36778877 532 56889999999999999999875
No 367
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=21.78 E-value=1.2e+02 Score=27.93 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=32.0
Q ss_pred EEEEEEe----CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 16 LTLTVKW----SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 16 i~i~vk~----~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
+.|.++- .+..+++.++...|-.+|-++|++..|+.|+.-+|..
T Consensus 177 v~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 177 VEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp EEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred EEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 5666663 2347899999999999999999999999999888864
No 368
>smart00455 RBD Raf-like Ras-binding domain.
Probab=21.03 E-value=2.7e+02 Score=20.27 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=32.8
Q ss_pred CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCceEee
Q 042485 23 SGKEYTVRVCGDDSVAELKRRICELTNVLPKRQKLLY 59 (332)
Q Consensus 23 ~g~~~~i~v~~~~tV~~LK~~I~~~tgvp~~~QkLl~ 59 (332)
.|+...|.+-++.|+.|.-+.+.+.-|+.|+.-.+..
T Consensus 8 ~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~ 44 (70)
T smart00455 8 DNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRL 44 (70)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 5677789999999999999999999999998777764
Done!